BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036731
         (259 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 104/245 (42%), Positives = 145/245 (59%), Gaps = 6/245 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M NGN  FGV  KPN V Y TIID LCK+G +DK KELFL+MK   I+P+VV Y+S+IHG
Sbjct: 223 MLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHG 282

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C+      A+ LF EM+D G+  +VVTFNV++D LCK  KM+EA  LL LMIQ G  PD
Sbjct: 283 MCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPD 342

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            F       Y  LIDG C  G++ +AR+L  S+   G+  + V+YN+ I+  C   +M +
Sbjct: 343 TF------TYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVE 396

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  L+ +M  K + P  + + TL+    R+ +      L   M   ++ P +   +I++D
Sbjct: 397 AKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLD 456

Query: 241 LLVKN 245
            L KN
Sbjct: 457 GLCKN 461



 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/283 (38%), Positives = 156/283 (55%), Gaps = 44/283 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TYNT+IDG C EG +D A++LF+ M+ + I  + V+YN LI+G+C +    EA+ L
Sbjct: 341 PDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKL 400

Query: 74  FIEMMDRGLQSDVVTFN-----------------------------------VIMDELCK 98
           + EMM + +   V+T+N                                   +++D LCK
Sbjct: 401 YREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCK 460

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
           N  + EA  L   +     +P      +I  + CLIDGLCK  K++ AREL   L+  GL
Sbjct: 461 NNHLSEAMELFHYLENHDFQP------SIQIFNCLIDGLCKARKIEIARELFNRLSHEGL 514

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            PNV+TY + IH LC   Q++ A DLFL ME KG APN V F TLM  F + +E  KV+E
Sbjct: 515 EPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVE 574

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKNEI---SLNSIPQFNRQ 258
           LL+ M +++  P AS +SI+VDLL K+E     L+ +P F  Q
Sbjct: 575 LLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQ 617



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 113/227 (49%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +T N +I+  C    VD    +  +M     +PN VT+ SL+ G C  +  +EA  L
Sbjct: 125 PDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGL 184

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G + +VVT+  +++ LC       A +L + M+ G        + N+V Y  +
Sbjct: 185 LRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTI 244

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK G +   +EL   +   G+ P+VV Y+  IH +C+  + + A  LF +M  +GV
Sbjct: 245 IDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGV 304

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN V F  L+ +  +  +  +   LL+ M +R   P     + ++D
Sbjct: 305 HPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLID 351



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 12/237 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   ++NT++  + K         L+ +M    + P+ +T N LI+ +C  N  +    +
Sbjct: 90  PPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAV 149

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ RG   + VTF  ++  LC   ++ EAT LL  M++ G RP      N+V YG L
Sbjct: 150 LGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRP------NVVTYGTL 203

Query: 134 IDGLCKIGKLKNARELSQSLTRAG------LMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           ++GLC  G    A +L + +          + PN+V Y   I +LC D  +DK  +LFL+
Sbjct: 204 LNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLE 263

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M+ +G++P+ V +++++              L   M    V P     ++++D L K
Sbjct: 264 MKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCK 320



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 65/109 (59%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   +N +IDGLCK   ++ A+ELF ++  E + PNV+TY  +IHG C +     A+ 
Sbjct: 480 QPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKD 539

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           LF+ M ++G   ++VTFN +M   C+N +M +   LL  M +    PDA
Sbjct: 540 LFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDA 588



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 60/97 (61%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TY  +I GLCK G ++ AK+LFL M+++   PN+VT+N+L+ GFC  ++  +   
Sbjct: 515 EPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVE 574

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           L  EM ++    D  T ++++D L K+ K  E   LL
Sbjct: 575 LLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLL 611


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 102/259 (39%), Positives = 158/259 (61%), Gaps = 6/259 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N   ++GV CKP  +TY+ IIDGLCK G  D+AKELF +MK + + P+V++Y++LIHG
Sbjct: 222 MLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHG 281

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC A   +++++LF EM+D+G+Q D+VTF+V++D LCK  K+ EA +LL++MIQ G+ P 
Sbjct: 282 FCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVP- 340

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N++ Y  LIDG C +G L +AREL  S+   GL P+ ++Y   I+  C   ++ +
Sbjct: 341 -----NLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKE 395

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +L+ +M   G +PN   + TL+    +K +     +L   M    V   + I  I +D
Sbjct: 396 AMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLD 455

Query: 241 LLVKNEISLNSIPQFNRQK 259
            L KN+    ++  FN  K
Sbjct: 456 GLCKNDCLFEAMELFNELK 474



 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 156/283 (55%), Gaps = 34/283 (12%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+V  PN +TYN++IDG C  G ++ A+ELFL M  + + P+ ++Y +LI+G+C      
Sbjct: 337 GIV--PNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVK 394

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------- 119
           EA  L+ EM+  G   +V T+  ++  L +  K+ +A +L  +M   GV           
Sbjct: 395 EAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFL 454

Query: 120 DAFCE--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           D  C+                    +NI  Y CLIDGLCK GKL+ A EL + L++ GL 
Sbjct: 455 DGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQ 514

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+VVTYNI IH  C   Q+D A+ LF  ME  G  P+ + + TL+  F   N+  +VI+L
Sbjct: 515 PDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKL 574

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKNEIS---LNSIPQFNRQK 259
           L  M +++V P A+  +I+VD+L K+E     ++ +P+F  Q+
Sbjct: 575 LHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPKFPVQR 617



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 116/217 (53%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T + + + LC    V +A      +      PNVVTY +LI G C  +  +EA  L
Sbjct: 124 PDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRL 183

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+ M   G   + VT+  ++  LC+   ++ A +L   M+    +    C+  ++ Y  +
Sbjct: 184 FLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSII 243

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK+G+   A+EL + +   G++P+V++Y+  IH  C   + D++  LF +M  +GV
Sbjct: 244 IDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGV 303

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V F+ L+ +  ++ + ++  +LL  M +R ++P
Sbjct: 304 QPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVP 340



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A + F  MM       + +FN ++  L K     +   L + M   G+ PD F  ++I+
Sbjct: 74  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLF-TLSIL 132

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           A     + LC + ++  A      + R G +PNVVTY   I  LC + ++ +A  LFL M
Sbjct: 133 A-----NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRM 187

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM--DKR----NVMPYASILSIIVDLL 242
           +  G  PN V + TL+    +    +  ++L + M  D      N  P     SII+D L
Sbjct: 188 QKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGL 247

Query: 243 VK 244
            K
Sbjct: 248 CK 249


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 151/259 (58%), Gaps = 6/259 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N    + + CKPN +TYN I+DGLCK G  D+AK+LF +MK + + P++++YNSLIHG
Sbjct: 200 MLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHG 259

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC A    E++ L  EM+D+GLQ D+VTFNV++D LCK  K+ EA +LL +MI+ G+ PD
Sbjct: 260 FCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPD 319

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +V Y  LI+G C +G L +AREL  S+   G  P+V++YN+ I+      ++++
Sbjct: 320 ------LVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEE 373

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  L+ +M + G  PN + + +L+       +     +L   M    +   +    I +D
Sbjct: 374 AMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLD 433

Query: 241 LLVKNEISLNSIPQFNRQK 259
            L KN+    ++  F   K
Sbjct: 434 GLCKNDCLFEAMKLFTELK 452



 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 158/314 (50%), Gaps = 67/314 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+N +ID LCKEG V +AK+L   M +  I P++VTYNSLI GFC   D N A  
Sbjct: 282 QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARE 341

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL---------------DLMIQG-- 115
           LF+ M  +G + DV+++NV+++   K  K++EA +L                D +++G  
Sbjct: 342 LFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIF 401

Query: 116 ---------------------------GVRPDAFCE--------------------INIV 128
                                      G+  D  C+                    + I 
Sbjct: 402 LAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIE 461

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
              CLIDGLCK GKL+ A EL + L+  G  PNVVTY I IH  C + Q+DKA+ L   M
Sbjct: 462 NLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKM 521

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI- 247
           E  G  P+ + + TLM  F   N+  +V++LL  M +++V P A   SI+VD+L K+E  
Sbjct: 522 EANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKY 581

Query: 248 --SLNSIPQFNRQK 259
              L+ +P+F  QK
Sbjct: 582 QECLHLLPRFPIQK 595



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 12/223 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYNT+I GLC E  + +A  LFL+M+     P+VVTY +LI G C   + N A  L
Sbjct: 137 PNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKL 196

Query: 74  FIEMMDR------GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             EM++         + +V+T+N+I+D LCK  + DEA +L + M   G+ P      +I
Sbjct: 197 HQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIP------SI 250

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           ++Y  LI G C  GK + ++ L   +   GL P++VT+N+ I  LC + ++ +A  L   
Sbjct: 251 ISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGV 310

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M   G+ P+ V + +L+  F    + +   EL  SM  +   P
Sbjct: 311 MIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEP 353



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 115/213 (53%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T N +++ LC    + +    F  +     +PN+VTYN+LI G C  +  +EA  LF+ M
Sbjct: 106 TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM 165

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
              G   DVVT+  ++  LC    ++ A +L   M+    R +  C+ N++ Y  ++DGL
Sbjct: 166 QKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGL 225

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK+G+   A++L + +   G++P++++YN  IH  C   + +++  L  +M  +G+ P+ 
Sbjct: 226 CKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDM 285

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V F  L+ +  ++ +  +  +LL  M +  ++P
Sbjct: 286 VTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVP 318



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 12/237 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  ++N ++ GL K     +   L+ QM+   ++ +  T N L++  C  N   E    
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAA 126

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  ++ RG   ++VT+N ++  LC   ++ EATRL   M + G  PD      +V YG L
Sbjct: 127 FAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPD------VVTYGTL 180

Query: 134 IDGLCKIGKLKNARELSQ------SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           I GLC  G +  A +L Q      S       PNV+TYNI +  LC   + D+A  LF +
Sbjct: 181 IKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEE 240

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M+ +G+ P+ + + +L+  F    +  +   LL  M  + + P     ++++D L K
Sbjct: 241 MKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCK 297


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 138/239 (57%), Gaps = 6/239 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE    C P++VTYNT+I+GL K   +D A  L  +M D    PNV +YN+++HGFC AN
Sbjct: 220 REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKAN 279

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A +L  +M+ RG   DVV++  +++ LCK  ++DEA R++D MIQ G +P      
Sbjct: 280 RVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQP------ 333

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N++ YG L+DG C++G L  A EL + +T  G  PN +TYN  +H  C    M++AH + 
Sbjct: 334 NVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVL 393

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             M   G  P+ + ++T++  F +  +  +  +LL  M +R   P  + LS ++D L K
Sbjct: 394 QMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCK 452



 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 125/234 (53%), Gaps = 6/234 (2%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C P+  TY+TI+D L K G VD A  L   M  +  +PNVVTY+SL+HG C A   +EA 
Sbjct: 944  CPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEAT 1003

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             L   M   G   ++VT+N I+D  CK  ++DEA  LL+ M+ GG +P      N+V Y 
Sbjct: 1004 ALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQP------NVVTYT 1057

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             L+D  CK GK ++A  L + +   G +PN+ TYN  +   C  +++++A  L   M  K
Sbjct: 1058 VLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQK 1117

Query: 192  GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            G  PN V + T++    +  +  + + LL  M   N +P     + I+D + K 
Sbjct: 1118 GCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKT 1171



 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 131/233 (56%), Gaps = 7/233 (3%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
            C PN VTYN+++ GLCK    D+A+ L  +M + +  +P+++TYN++I G C +   + A
Sbjct: 1189 CTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 1248

Query: 71   EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              LF++M+  GL  D VT+++++  LCK R MDEA  +L+LM++ G  P A      + Y
Sbjct: 1249 YKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGA------ITY 1302

Query: 131  GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            G LIDG CK G L  A E+ Q L   G  P+VVT++I I  L    ++ +A +L   M  
Sbjct: 1303 GTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLR 1362

Query: 191  KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
             G+ P+ V + TL+  F   + T   ++L   M +    P  +  + +V  LV
Sbjct: 1363 AGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLV 1415



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 7/236 (2%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C PN  T+  +I GLC+ G +  A EL  +M    +  NV+ +N +I G C A   + A 
Sbjct: 873  CSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSAL 932

Query: 72   YLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF EM + G    DV T++ I+D L K+ K+D+A RL++ M+  G  P      N+V Y
Sbjct: 933  ELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSP------NVVTY 986

Query: 131  GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
              L+ GLCK GKL  A  L Q +TR+G  PN+VTYN  I   C   ++D+A+ L  +M  
Sbjct: 987  SSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVD 1046

Query: 191  KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             G  PN V +T L+ +F +  +    I L+  M ++  +P     + ++D+  K +
Sbjct: 1047 GGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKD 1102



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 30/265 (11%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C PN VTY++++ GLCK G +D+A  L  +M     +PN+VTYN++I G C     +EA 
Sbjct: 979  CSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAY 1038

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            +L  EM+D G Q +VVT+ V++D  CK  K ++A  L+++M++ G  P+ F         
Sbjct: 1039 HLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMF 1098

Query: 123  --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                                C  N+V+Y  +I GLCK  K+     L + +     +P++
Sbjct: 1099 CKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDI 1158

Query: 163  VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            VT+N  I A+C   ++D A++LF  ++  G  PN V + +L+    +     +   LLR 
Sbjct: 1159 VTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLRE 1218

Query: 223  MD-KRNVMPYASILSIIVDLLVKNE 246
            M  K+   P     + ++D L K++
Sbjct: 1219 MTRKQGCSPDIITYNTVIDGLCKSK 1243



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN +TY T++DG C+ G +D A EL  +M +    PN +TYN+++H FC  ND   A 
Sbjct: 331 CQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAH 390

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G   D + ++ I+   CK  K+ EA  LL+ MI+ G RPD  C        
Sbjct: 391 QVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVAC------LS 444

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID LCK   + +A+EL +        P+VV Y+I IHALC  +++ +A   +LD+ VK
Sbjct: 445 TLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAES-WLDVMVK 503

Query: 192 G-VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               P+ V + +++    +    +    L   M    VMP     SI++    K+
Sbjct: 504 NRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKD 558



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+    +T+ID LCK   +D A+EL       +  P+VV Y+ LIH  C A    EAE
Sbjct: 436 CRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAE 495

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+      DVVT+N ++D LCK+R++++A  L D M   GV PD      +V Y 
Sbjct: 496 SWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPD------VVTYS 549

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I   CK   L +A ++ + +  A  +P+VVTY+  I+ LC    +DKA D+F +M   
Sbjct: 550 IVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGC 609

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G APN V + TL+    + N+  +  E+L  M K++  P
Sbjct: 610 GCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTP 648



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 7/213 (3%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C P+ +TYNT+IDGLCK   VD+A +LFLQM  + + P+ VTY+ +I   C     +EA 
Sbjct: 1225 CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEAN 1284

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +   M+  G     +T+  ++D  CK   +D+A  +L L++  G  PD      +V + 
Sbjct: 1285 NVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPD------VVTFS 1338

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
              ID L K G+L+ A EL +++ RAGL+P+ VTYN  +   C+    + A DLF  M   
Sbjct: 1339 IFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQC 1398

Query: 192  GVAPNCVIFTTLMPSFIRKNETSKVI-ELLRSM 223
            G  P+   +TTL+   + K     ++ E+ +SM
Sbjct: 1399 GCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSM 1431



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 8/249 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y T+I+GLCK   VD+A  +  +M      PNV+TY +L+ GFC   D + A 
Sbjct: 296 CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAV 355

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M +RG + + +T+N IM   C+   M+ A ++L +MIQ G  PDA      + Y 
Sbjct: 356 ELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDA------INYS 409

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G CK GKL+ A +L + + R G  P+V   +  I ALC    +D A +L L M + 
Sbjct: 410 TIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQEL-LRMSIG 468

Query: 192 -GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
              AP+ V ++ L+ +  +     +    L  M K    P     + +VD L K+    +
Sbjct: 469 MDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIND 528

Query: 251 SIPQFNRQK 259
           +   F+R +
Sbjct: 529 AFLLFDRMR 537



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 123/213 (57%), Gaps = 6/213 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN+++DGLCK   ++ A  LF +M+   + P+VVTY+ +IH FC  N+ + A 
Sbjct: 506 CYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAF 565

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M +     DVVT++ +++ LCK   +D+A  +   M+  G  P      N+V Y 
Sbjct: 566 KMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAP------NLVTYN 619

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCKI K++ A E+ + + +    P+ +TY   I+ LCN  ++++A  +  +M+ K
Sbjct: 620 TLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDK 679

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           G  P+ + + TL+ +  + N    V +LL+ M+
Sbjct: 680 GCLPDRMTYGTLLRALQKTNNLELVEQLLKEME 712



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C PN V+YNT+I GLCK   V +   L  QM   N  P++VT+N++I   C     + A 
Sbjct: 1119 CVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAY 1178

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAY 130
             LF  + + G   ++VT+N ++  LCK+R+ D+A  LL  M +  G  PD      I+ Y
Sbjct: 1179 ELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPD------IITY 1232

Query: 131  GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
              +IDGLCK  ++  A +L   +   GL P+ VTY+I I +LC    MD+A+++   M  
Sbjct: 1233 NTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK 1292

Query: 191  KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             G  P  + + TL+  F +     K +E+L+ +  +   P     SI +D L K
Sbjct: 1293 NGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSK 1346



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 10/234 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+ C P+ V Y+ +I  LCK   + +A+     M      P+VVTYNS++ G C +   N
Sbjct: 468 GMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIN 527

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF  M   G+  DVVT+++++   CK+  +D A ++L+ M +    PD      +V
Sbjct: 528 DAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPD------VV 581

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI+GLCK G +  A ++ Q +   G  PN+VTYN  I  LC   ++++A ++   M
Sbjct: 582 TYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIM 641

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
             +   P+ + +T L+      +   +   +LR M  +  +P    Y ++L  +
Sbjct: 642 RKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRAL 695



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TYN I+   C+   +++A ++   M      P+ + Y+++I GFC A    EA  
Sbjct: 367 RPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHD 426

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ RG + DV   + ++D LCK   +D A  LL + I     PD      +VAY  
Sbjct: 427 LLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPD------VVAYSI 480

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LCK  +L  A      + +    P+VVTYN  +  LC   +++ A  LF  M   G
Sbjct: 481 LIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAG 540

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V P+ V ++ ++ SF + N      ++L  M +   +P     S +++ L K
Sbjct: 541 VMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCK 592



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 40/247 (16%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +++ L K     +A +LF    +     + VTY++LI GF  A     A  LF EM  
Sbjct: 130 NCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNR 189

Query: 80  RGLQS----------------------------------DVVTFNVIMDELCKNRKMDEA 105
           +GL++                                  D VT+N +++ L K+ ++D+A
Sbjct: 190 KGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDA 249

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
            RLL+ M+  G  P      N+ +Y  ++ G CK  +++NA  L + +   G  P+VV+Y
Sbjct: 250 IRLLEEMVDNGFAP------NVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSY 303

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
              I+ LC  +Q+D+A  +   M  +G  PN + + TL+  F R  +    +EL+R M +
Sbjct: 304 TTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 363

Query: 226 RNVMPYA 232
           R   P A
Sbjct: 364 RGYRPNA 370



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 60/105 (57%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G  C PN VTYNT+IDGLCK   V++A E+   M+ ++  P+ +TY  LI+G C A+  
Sbjct: 607 LGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRL 666

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
            EA  +  EM D+G   D +T+  ++  L K   ++   +LL  M
Sbjct: 667 EEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 111/276 (40%), Gaps = 51/276 (18%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P  +TY T+IDG CK G +DKA E+   +  +   P+VVT++  I          +A  L
Sbjct: 1297 PGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGEL 1356

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY--- 130
               M+  GL  D VT+N ++   C     ++A  L ++M Q G  PD      +V +   
Sbjct: 1357 LETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVD 1416

Query: 131  ------------------------------------------GC-LIDGLCKIGKLKNAR 147
                                                      GC ++D   K G  ++AR
Sbjct: 1417 KKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDAR 1476

Query: 148  ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
            ++ + + +     NVV ++  +      +Q ++A  L+  M ++GV P+ V F +L+   
Sbjct: 1477 KVFEGMDQR----NVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMC 1532

Query: 208  IRKNETSKVIELLRSMDK-RNVMPYASILSIIVDLL 242
                     ++   S+ +   + P     S ++DLL
Sbjct: 1533 CHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLL 1568



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G   D  T N ++  L + ++  +A ++         R    C  N+  +  LI GLC+ 
Sbjct: 839 GYNHDTYTCNCLLQALLRLKRPKDALQVY--------RNKLCCSPNMFTFTILIHGLCRA 890

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG-VAPNCVI 199
           G +  A EL + + R G+  NV+ +N+ I  LC+  ++D A +LF +ME  G   P+   
Sbjct: 891 GDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFT 950

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           ++T++ S ++  +      L+  M  +    NV+ Y+S+L
Sbjct: 951 YSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLL 990



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 38/86 (44%)

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
           TR G    +   N  ++ L    Q  +AHDLF          + V ++TL+  FIR  + 
Sbjct: 118 TRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKI 177

Query: 214 SKVIELLRSMDKRNVMPYASILSIIV 239
               EL   M+++ +  +A +   I+
Sbjct: 178 LPAYELFDEMNRKGLKAHAGVHKSIL 203


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/279 (36%), Positives = 151/279 (54%), Gaps = 35/279 (12%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M +    +G+ CKPN ++Y+ IIDGLCK G  D+A+ELF +MK   + P+V++Y SLIHG
Sbjct: 624 MLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHG 683

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC +    +A+YLF EM+D G+Q DV TF+V++D LCK  K+ EA  LL++MIQ G  P+
Sbjct: 684 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPN 743

Query: 121 AF-----------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQ 151
                                          C  ++V YG L+ GLC+ G +K A EL +
Sbjct: 744 TVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHK 803

Query: 152 S-LTRAG-----LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
             L+  G       P+V++Y+I I  LC   + D+A +LF +M+  GV PN + +T+L+ 
Sbjct: 804 KMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIH 863

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            F R  +      L   M  + V   A   S+++    K
Sbjct: 864 GFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCK 902



 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 151/279 (54%), Gaps = 35/279 (12%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N    +G+ CKP  ++Y+ IIDGLCK+   D+A+ELF +MK + I P+V++Y +LIHG
Sbjct: 443 MLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHG 502

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC +    +A+ LF EM+D G+Q DV T +V++D LCK  K+ EA +LL+++IQ G   D
Sbjct: 503 FCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILD 562

Query: 121 AF-----------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQ 151
                                          C  N+V    L+ GLC+ G +K A EL +
Sbjct: 563 VVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHK 622

Query: 152 SL----TRAGL--MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           ++    +  G+   PN ++Y+I I  LC   + D+A +LF +M+  GV P+ + +T+L+ 
Sbjct: 623 NMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIH 682

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            F R  +      L   M    V P  +  S+++D+L K
Sbjct: 683 GFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCK 721



 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 147/267 (55%), Gaps = 14/267 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N    +G+ CKP  ++Y+ IIDGLCK+   D+A+ELF +MK + + P+V++Y SLIHG
Sbjct: 150 MLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHG 209

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC++    +A+ LF EM+D G+Q DV T  V++D  CK  K+ EA  LL++M+  G    
Sbjct: 210 FCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRG---- 265

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
             C ++IV Y  LI GLC   ++  A +L  S+ + G  P+ + Y   +  LC   +++ 
Sbjct: 266 --CILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINI 323

Query: 181 AHDLFLDM-------EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN-VMPYA 232
           A  L  +M        +K + P+    + L+    ++ +  +  ELL  M +R  ++   
Sbjct: 324 ALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIV 383

Query: 233 SILSIIVDLLVKNEISLNSIPQFNRQK 259
           +  ++I  L +++ IS  +    + QK
Sbjct: 384 TYSTLIKGLCMEHRISEATWLFMSMQK 410



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 134/250 (53%), Gaps = 2/250 (0%)

Query: 1   MANGNREFGVVC-KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH 59
           M N   ++G+ C +P+  T + +ID LCKEG V +A EL   M       ++VTY++LI 
Sbjct: 331 MLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIK 390

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G C  +  +EA +LF+ M   G + D +T+  +M  LC+   ++ A +L   M+    R 
Sbjct: 391 GLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRY 450

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
              C+  +++Y  +IDGLCK  +   AREL + +   G+MP+V++Y   IH  C   + +
Sbjct: 451 GIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWE 510

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN-VMPYASILSII 238
           KA  LF +M   G+ P+    + L+    +K +  +  +LL  + +R  ++   +  +++
Sbjct: 511 KAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLV 570

Query: 239 VDLLVKNEIS 248
             L +K+ IS
Sbjct: 571 KGLCMKHRIS 580



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 1/237 (0%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T + +ID LCKEG V +A EL   M       ++VTY++LI G C  +  +EA +
Sbjct: 51  RPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATW 110

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF+ M   G + D +T+  +M  LC+   ++ A +L   M+    R    C+  +++Y  
Sbjct: 111 LFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSI 170

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK  +   AREL + +   G+MP+V++Y   IH  C+  + +KA  LF +M   G
Sbjct: 171 IIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVG 230

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN-VMPYASILSIIVDLLVKNEIS 248
           + P+      L+  F ++ +  +  ELL  M  R  ++   +  ++I  L +K+ IS
Sbjct: 231 IQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRIS 287



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 12/227 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTY+T+I GLC E  + +A  LF+ M+     P+ +TY +L+ G C   + N A 
Sbjct: 85  CILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIAL 144

Query: 72  YLFIEMM-DRG-----LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
            L  EM+ D G      +  ++++++I+D LCK+R+ DEA  L   M   G+ PD     
Sbjct: 145 QLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPD----- 199

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +++Y  LI G C  GK + A+ L   +   G+ P+V T  + I   C + ++ +A++L 
Sbjct: 200 -VISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELL 258

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             M  +G   + V ++TL+     K+  S+  +L  SM K    P A
Sbjct: 259 EVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDA 305



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 21/246 (8%)

Query: 14  PNTVTYNTIIDGLCK-----EGFVDKA----KELFLQMKDENINPNVVTYNSLIHGFCYA 64
           P++ T+N +I+ LC      EG    A    +     +   +I P+V T + LI   C  
Sbjct: 8   PDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKE 67

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA  L   M+ RG   D+VT++ ++  LC   ++ EAT L   M + G RPDA   
Sbjct: 68  GKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA--- 124

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSL----TRAGL--MPNVVTYNITIHALCNDEQM 178
              + YG L+ GLC+ G +  A +L Q +     R G+   P +++Y+I I  LC D + 
Sbjct: 125 ---ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRE 181

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           D+A +LF +M+ +G+ P+ + +T+L+  F    +  K   L   M    + P  +   ++
Sbjct: 182 DEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVL 241

Query: 239 VDLLVK 244
           +D+  K
Sbjct: 242 IDMFCK 247



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 74/105 (70%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M +   ++G   KP+ ++Y+ IIDGLCK G  D+A+ELF +MK   + PNV++Y SLIHG
Sbjct: 805 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHG 864

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           FC +    +A++LF EM+D+G+Q + VT++V++   CK  ++D+A
Sbjct: 865 FCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 909


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/279 (36%), Positives = 151/279 (54%), Gaps = 35/279 (12%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M +    +G+ CKPN ++Y+ IIDGLCK G  D+A+ELF +MK   + P+V++Y SLIHG
Sbjct: 468 MLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHG 527

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC +    +A+YLF EM+D G+Q DV TF+V++D LCK  K+ EA  LL++MIQ G  P+
Sbjct: 528 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPN 587

Query: 121 AF-----------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQ 151
                                          C  ++V YG L+ GLC+ G +K A EL +
Sbjct: 588 TVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHK 647

Query: 152 S-LTRAG-----LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
             L+  G       P+V++Y+I I  LC   + D+A +LF +M+  GV PN + +T+L+ 
Sbjct: 648 KMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIH 707

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            F R  +      L   M  + V   A   S+++    K
Sbjct: 708 GFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCK 746



 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 154/280 (55%), Gaps = 35/280 (12%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N   ++G+ CKP  V+Y+ IIDGLCK+   D+A+ELF +MK + + P+V++Y SLIHG
Sbjct: 106 MLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHG 165

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC +    +A+ LF EM+D G++SDV T ++++D LCK  K+ EA  LL++MIQ G   D
Sbjct: 166 FCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILD 225

Query: 121 AF-----------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQ 151
                                          C  + +AYG L+ GLC+ G +  A +L Q
Sbjct: 226 IVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQ 285

Query: 152 SL----TRAGL--MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
            +     R G+   P +++Y+I I  LC D + D+A +LF +M+ +G+ P+ + +TTL+ 
Sbjct: 286 EMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIH 345

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            F    +  K   L   M    + P  +  S+++D+L K 
Sbjct: 346 GFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKK 385



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/279 (34%), Positives = 152/279 (54%), Gaps = 35/279 (12%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N    +G+ CKP  ++Y+ IIDGLCK+   D+A+ELF +MK + I P+V++Y +LIHG
Sbjct: 287 MLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHG 346

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC +    +A+ LF EM+D G+Q DV T +V++D LCK  K+ EA +LL+++IQ G  PD
Sbjct: 347 FCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPD 406

Query: 121 AF-----------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQ 151
                                          C  N+V    L+ GLC+ G +K A EL +
Sbjct: 407 VVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHK 466

Query: 152 SL----TRAGL--MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           ++    +  G+   PN ++Y+I I  LC   + D+A +LF +M+  GV P+ + +T+L+ 
Sbjct: 467 NMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIH 526

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            F R  +      L   M    V P  +  S+++D+L K
Sbjct: 527 GFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCK 565



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 1/237 (0%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T   +ID  CKEG V +A EL   M       ++VTY++LI G C  +  +EA  
Sbjct: 7   QPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQ 66

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF+ M   G + D + +  +M  LC+  K++ A  L   M+    +    C+  +V+Y  
Sbjct: 67  LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSI 126

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK  +   AREL + +   G+MP+V++Y   IH  C   + +KA  LF +M   G
Sbjct: 127 IIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVG 186

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN-VMPYASILSIIVDLLVKNEIS 248
           +  +    + L+    ++ +  +  ELL  M +R  ++   +  ++I  L +K+ IS
Sbjct: 187 IRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRIS 243



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 12/227 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTY+T+I GLC +  + +A +LF+ MK     P+ + Y +L+ G C     N A 
Sbjct: 41  CILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIAL 100

Query: 72  YLFIEMMDRGLQSDV------VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           +L  EM++   Q  +      V++++I+D LCK+R+ DEA  L   M   G+ PD     
Sbjct: 101 HLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPD----- 155

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +++Y  LI G C+ GK + A+ L   +   G+  +V T ++ I  LC + ++ +A++L 
Sbjct: 156 -VISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELL 214

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             M  +G   + V ++TL+     K+  S+   L  SM K    P A
Sbjct: 215 EVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDA 261



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 12/205 (5%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
            I P+V T   LI  FC      EA  L   M+ RG   D+VT++ ++  LC   ++ EA
Sbjct: 5   GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEA 64

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL----TRAGL--M 159
           T+L   M + G RPDA      +AYG L+ GLC+ GK+  A  L Q +    ++ G+   
Sbjct: 65  TQLFMSMKKLGCRPDA------IAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCK 118

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P +V+Y+I I  LC D + D+A +LF +M+ +G+ P+ + +T+L+  F R  +  K   L
Sbjct: 119 PTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCL 178

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
              M    +    +  S+++D+L K
Sbjct: 179 FNEMLDVGIRSDVTTSSMLIDILCK 203



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 74/105 (70%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M +   ++G   KP+ ++Y+ IIDGLCK G  D+A+ELF +MK   + PNV++Y SLIHG
Sbjct: 649 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHG 708

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           FC +    +A++LF EM+D+G+Q + VT++V++   CK  ++D+A
Sbjct: 709 FCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 753



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%)

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G+ P+V T  + I   C + ++ +A++L   M  +G   + V ++TL+     K+ 
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 213 TSKVIELLRSMDKRNVMPYA 232
            S+  +L  SM K    P A
Sbjct: 61  ISEATQLFMSMKKLGCRPDA 80


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 139/235 (59%), Gaps = 11/235 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE    C P++VTYNT+I+GL K   +D A  L  +M D    PNV +YN+++HGFC AN
Sbjct: 34  REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKAN 93

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A +L  +M+ RG   DVV++  +++ LCK  ++DEA R++D MIQ G +P      
Sbjct: 94  RVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQP------ 147

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N++ YG L+DG C++G L  A EL + +T  G  PN +TYN  +H LC+  ++D A  LF
Sbjct: 148 NVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLF 207

Query: 186 LDMEVKG-VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
            +ME  G   P+   ++T++ S ++  +      L+ +M  +    NV+ Y+S+L
Sbjct: 208 KEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLL 262



 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 125/234 (53%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TY+TI+D L K G VD A  L   M  +  +PNVVTY+SL+HG C A   +EA 
Sbjct: 216 CPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEAT 275

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M   G   ++VT+N I+D  CK  ++DEA  LL+ M+ GG +P      N+V Y 
Sbjct: 276 ALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQP------NVVTYT 329

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D  CK GK ++A  L + +   G +PN+ TYN  +   C  +++++A  L   M  K
Sbjct: 330 VLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQK 389

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  PN V + T++    +  +  + + LL  M   N +P     + I+D + K 
Sbjct: 390 GCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKT 443



 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 131/233 (56%), Gaps = 7/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C PN VTYN+++ GLCK    D+A+ L  +M + +  +P+++TYN++I G C +   + A
Sbjct: 461 CTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 520

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF++M+  GL  D VT+++++  LCK R MDEA  +L+LM++ G  P A      + Y
Sbjct: 521 YKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGA------ITY 574

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           G LIDG CK G L  A E+ Q L   G  P+VVT++I I  L    ++ +A +L   M  
Sbjct: 575 GTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLR 634

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
            G+ P+ V + TL+  F   + T   ++L   M +    P  +  + +V  LV
Sbjct: 635 AGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLV 687



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 30/265 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY++++ GLCK G +D+A  L  +M     +PN+VTYN++I G C     +EA 
Sbjct: 251 CSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAY 310

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
           +L  EM+D G Q +VVT+ V++D  CK  K ++A  L+++M++ G  P+ F         
Sbjct: 311 HLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMF 370

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C  N+V+Y  +I GLCK  K+     L + +     +P++
Sbjct: 371 CKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDI 430

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VT+N  I A+C   ++D A++LF  ++  G  PN V + +L+    +     +   LLR 
Sbjct: 431 VTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLRE 490

Query: 223 MD-KRNVMPYASILSIIVDLLVKNE 246
           M  K+   P     + ++D L K++
Sbjct: 491 MTRKQGCSPDIITYNTVIDGLCKSK 515



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 7/213 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TYNT+IDGLCK   VD+A +LFLQM  + + P+ VTY+ +I   C     +EA 
Sbjct: 497 CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEAN 556

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G     +T+  ++D  CK   +D+A  +L L++  G  PD      +V + 
Sbjct: 557 NVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPD------VVTFS 610

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             ID L K G+L+ A EL +++ RAGL+P+ VTYN  +   C+  + + A DLF  M   
Sbjct: 611 IFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQC 670

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVI-ELLRSM 223
           G  P+   +TTL+   + K     ++ E+ +SM
Sbjct: 671 GCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSM 703



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V+YNT+I GLCK   V +   L  QM   N  P++VT+N++I   C     + A 
Sbjct: 391 CVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAY 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAY 130
            LF  + + G   ++VT+N ++  LCK+R+ D+A  LL  M +  G  PD      I+ Y
Sbjct: 451 ELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPD------IITY 504

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGLCK  ++  A +L   +   GL P+ VTY+I I +LC    MD+A+++   M  
Sbjct: 505 NTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK 564

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G  P  + + TL+  F +     K +E+L+ +  +   P     SI +D L K
Sbjct: 565 NGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSK 618



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 7/191 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M  + +  +   + S++ G C A   ++A   F EM  +    D VT+N +++ L K+ +
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDR 59

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +D+A RLL+ M+  G  P      N+ +Y  ++ G CK  +++NA  L + +   G  P+
Sbjct: 60  LDDAIRLLEEMVDNGFAP------NVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPD 113

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VV+Y   I+ LC  +Q+D+A  +   M  +G  PN + + TL+  F R  +    +EL+R
Sbjct: 114 VVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVR 173

Query: 222 SMDKRNVMPYA 232
            M +R   P A
Sbjct: 174 KMTERGYRPNA 184



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 7/164 (4%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M  +GL++       I+  LC   +  +A      M +        C  + V Y  +I+G
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-------CPPDSVTYNTMING 53

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           L K  +L +A  L + +   G  PNV +YN  +H  C   +++ A  L   M ++G  P+
Sbjct: 54  LSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPD 113

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            V +TT++    + ++  +   ++  M +R   P       +VD
Sbjct: 114 VVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVD 157



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 133 LIDGLCKIGKLKNA----RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           ++ GLC  G+  +A    RE+S++       P+ VTYN  I+ L   +++D A  L  +M
Sbjct: 16  ILRGLCDAGQCSDAVLHFREMSKTCP-----PDSVTYNTMINGLSKSDRLDDAIRLLEEM 70

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              G APN   + T++  F + N     + LL  M  R   P     + +++ L K
Sbjct: 71  VDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCK 126


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N ++YNT+I+G CK   VDKA  LF +M  + + PN VTYN+LIHG C+     +A 
Sbjct: 346 CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAI 405

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ RG   D+VT+  + D LCKNR +D+A  LL  +      PD      I  Y 
Sbjct: 406 SLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD------IQIYT 459

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DG+C+ G+L++AR+L  +L+  GL PNV TYNI IH LC    + +A  LF +M   
Sbjct: 460 TILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKN 519

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G +PN   +  +   F+R NE  + IELL  M  R      S  +++V +L
Sbjct: 520 GCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGML 570



 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 131/258 (50%), Gaps = 29/258 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN V ++T+ID LCK+  V +A  +F +M  + I+PN+VTYNSLIHG C   +     
Sbjct: 206 CQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 265

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            L  EM+D  +  DV T N ++D LCK   + EA  ++D+MI  GV P+           
Sbjct: 266 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 325

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C  N+++Y  LI+G CKI  +  A  L + ++R  L PN 
Sbjct: 326 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNT 385

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTYN  IH LC+  ++  A  LF +M  +G  P+ V + TL     +     K + LL++
Sbjct: 386 VTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKA 445

Query: 223 MDKRNVMPYASILSIIVD 240
           ++  N  P   I + I+D
Sbjct: 446 IEGSNWDPDIQIYTTILD 463



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+ T+I GLC EG + +A  LF +M  E   PNVVTY +LI+G C   + + A  
Sbjct: 137 QPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIR 196

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M     Q +VV F+ ++D LCK+R++ EA  +   MI  G+ P      NIV Y  
Sbjct: 197 LLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISP------NIVTYNS 250

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK+ + K+   L   +  + +MP+V T N  + ALC +  + +AHD+   M  +G
Sbjct: 251 LIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRG 310

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           V PN V +  LM     +NE    +++  +M  +    NV+ Y +++
Sbjct: 311 VEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLI 357



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T NT++D LCKEG V +A ++   M    + PNVVTYN+L+ G C  N+ + A  +
Sbjct: 278 PDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKV 337

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +   ++V+++N +++  CK + +D+A  L + M +  + P      N V Y  L
Sbjct: 338 FDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTP------NTVTYNTL 391

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC +G+L++A  L   +   G +P++VTY      LC +  +DKA  L   +E    
Sbjct: 392 IHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNW 451

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+  I+TT++    R  E     +L  ++  + + P     +I++  L K
Sbjct: 452 DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 502



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           ++  NR       P+TV +N ++  + K         L  QM    I P+V T   +I+ 
Sbjct: 55  LSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINS 114

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C+ N  + A     +++  G Q D  TF  ++  LC   K+ EA  L D MI  G +P 
Sbjct: 115 LCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQP- 173

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V YG LI+GLCK+G    A  L +S+ +    PNVV ++  I +LC D Q+ +
Sbjct: 174 -----NVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A ++F +M  KG++PN V + +L+    +  E   V  L+  M    +MP    L+ +VD
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 241 LLVK 244
            L K
Sbjct: 289 ALCK 292



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 6/194 (3%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           ++N+      + N  +EA   F  M+ +      V FN ++  + K +       L   M
Sbjct: 37  SHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM 96

Query: 113 IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
              G+ PD +          +I+ LC + ++  A      + + G  P+  T+   I  L
Sbjct: 97  DSFGIPPDVY------TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGL 150

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           C + ++ +A  LF  M  +G  PN V + TL+    +   TS  I LLRSM++ N  P  
Sbjct: 151 CVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNV 210

Query: 233 SILSIIVDLLVKNE 246
            + S ++D L K+ 
Sbjct: 211 VVFSTLIDSLCKDR 224


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N ++YNT+I+G CK   VDKA  LF +M  + + PN VTYN+LIHG C+     +A 
Sbjct: 346 CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAI 405

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ RG   D+VT+  + D LCKNR +D+A  LL  +      PD      I  Y 
Sbjct: 406 SLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD------IQIYT 459

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DG+C+ G+L++AR+L  +L+  GL PNV TYNI IH LC    + +A  LF +M   
Sbjct: 460 TILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKN 519

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G +PN   +  +   F+R NE  + IELL  M  R      S  +++V +L
Sbjct: 520 GCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGML 570



 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 131/258 (50%), Gaps = 29/258 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN V ++T+ID LCK+  V +A  +F +M  + I+PN+VTYNSLIHG C   +     
Sbjct: 206 CQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 265

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            L  EM+D  +  DV T N ++D LCK   + EA  ++D+MI  GV P+           
Sbjct: 266 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 325

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C  N+++Y  LI+G CKI  +  A  L + ++R  L PN 
Sbjct: 326 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNT 385

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTYN  IH LC+  ++  A  LF +M  +G  P+ V + TL     +     K + LL++
Sbjct: 386 VTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKA 445

Query: 223 MDKRNVMPYASILSIIVD 240
           ++  N  P   I + I+D
Sbjct: 446 IEGSNWDPDIQIYTTILD 463



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+ T+I GLC EG + +A  LF +M  E   PNVVTY +LI+G C   + + A  
Sbjct: 137 QPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIR 196

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M     Q +VV F+ ++D LCK+R++ EA  +   MI  G+ P      NIV Y  
Sbjct: 197 LLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISP------NIVTYNS 250

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK+ + K+   L   +  + +MP+V T N  + ALC +  + +AHD+   M  +G
Sbjct: 251 LIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRG 310

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           V PN V +  LM     +NE    +++  +M  +    NV+ Y +++
Sbjct: 311 VEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLI 357



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T NT++D LCKEG V +A ++   M    + PNVVTYN+L+ G C  N+ + A  +
Sbjct: 278 PDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKV 337

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +   ++V+++N +++  CK + +D+A  L + M +  + P      N V Y  L
Sbjct: 338 FDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTP------NTVTYNTL 391

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC +G+L++A  L   +   G +P++VTY      LC +  +DKA  L   +E    
Sbjct: 392 IHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNW 451

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+  I+TT++    R  E     +L  ++  + + P     +I++  L K 
Sbjct: 452 DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQ 503



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           ++  NR       P+TV +N ++  + K         L  QM    I P+V T   +I+ 
Sbjct: 55  LSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINS 114

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C+ N  + A     +++  G Q D  TF  ++  LC   K+ EA  L D MI  G +P 
Sbjct: 115 LCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQP- 173

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V YG LI+GLCK+G    A  L +S+ +    PNVV ++  I +LC D Q+ +
Sbjct: 174 -----NVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A ++F +M  KG++PN V + +L+    +  E   V  L+  M    +MP    L+ +VD
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 241 LLVK 244
            L K
Sbjct: 289 ALCK 292



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 6/194 (3%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           ++N+      + N  +EA   F  M+ +      V FN ++  + K +       L   M
Sbjct: 37  SHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM 96

Query: 113 IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
              G+ PD +          +I+ LC + ++  A      + + G  P+  T+   I  L
Sbjct: 97  DSFGIPPDVY------TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGL 150

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           C + ++ +A  LF  M  +G  PN V + TL+    +   TS  I LLRSM++ N  P  
Sbjct: 151 CVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNV 210

Query: 233 SILSIIVDLLVKNE 246
            + S ++D L K+ 
Sbjct: 211 VVFSTLIDSLCKDR 224


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N ++YNT+I+G CK   VDKA  LF +M  + + PN VTYN+LIHG C+     +A 
Sbjct: 286 CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAI 345

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ RG   D+VT+  + D LCKNR +D+A  LL  +      PD      I  Y 
Sbjct: 346 SLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPD------IQIYT 399

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DG+C+ G+L++AR+L  +L+  GL PNV TYNI IH LC    + +A  LF +M   
Sbjct: 400 TILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKN 459

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G +PN   +  +   F+R NE  + IELL  M  R      S  +++V +L
Sbjct: 460 GCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGML 510



 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 131/257 (50%), Gaps = 29/257 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY T+I+GLCK+  V +A  +F +M  + I+PN+VTYNSLIHG C   +      
Sbjct: 147 QPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTT 206

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L  EM+D  +  DV T N ++D LCK   + EA  ++D+MI  GV P+            
Sbjct: 207 LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHC 266

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              C  N+++Y  LI+G CKI  +  A  L + ++R  L PN V
Sbjct: 267 LRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTV 326

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  IH LC+  ++  A  LF +M  +G  P+ V + TL     +     K + LL+++
Sbjct: 327 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI 386

Query: 224 DKRNVMPYASILSIIVD 240
           +  N  P   I + I+D
Sbjct: 387 EGSNWDPDIQIYTTILD 403



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 107/185 (57%), Gaps = 6/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  +YN +I+G C+   +DKA  L  QM  + +  + VTYN+LIHG C+      A 
Sbjct: 774 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAI 833

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G   D+VT+ +++D LCKN  + EA  LL  +   G   DA    +I+ Y 
Sbjct: 834 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI--EGSNLDA----DILVYN 887

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             IDG+C+ G+L+ AR+L  +L+  GL P+V TYNI IH LC    +D+A+ LF  M+  
Sbjct: 888 IAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDEN 947

Query: 192 GVAPN 196
            +  N
Sbjct: 948 DIWSN 952



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T NT++D LCKEG V +A ++   M    + PNVVTYN+L+ G C  N+ + A  +
Sbjct: 218 PDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKV 277

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +   ++V+++N +++  CK + +D+A  L + M +  + P      N V Y  L
Sbjct: 278 FDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTP------NTVTYNTL 331

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC +G+L++A  L   +   G +P++VTY      LC +  +DKA  L   +E    
Sbjct: 332 IHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNW 391

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+  I+TT++    R  E     +L  ++  + + P     +I++  L K
Sbjct: 392 DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK 442



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 19/234 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY T+++GLCK             M  + I+P++ TYNSLIH  C   +      
Sbjct: 648 QPDVVTYGTLMNGLCK-------------MITKGISPDIFTYNSLIHALCNLCEWKHVTT 694

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM++  +  +VV F+ ++D LCK   +  A  ++D+MI+ GV PD      +V Y  
Sbjct: 695 LLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPD------VVTYTA 748

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C   ++  A ++  ++   G +PNV +YNI I+  C  ++MDKA  L   M ++G
Sbjct: 749 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 808

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +  + V + TL+            I L   M     +P      I++D L KN 
Sbjct: 809 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNH 862



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 12/233 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            FG+   P+  T   +I+ LC    VD A     ++      P+  T+ +LI G C    
Sbjct: 73  SFGI--PPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGK 130

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA +LF +M+  G Q +VVT+  +++ LCK+R++ EA  +   MI  G+ P      N
Sbjct: 131 IGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISP------N 184

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           IV Y  LI GLCK+ + K+   L   +  + +MP+V T N  + ALC +  + +AHD+  
Sbjct: 185 IVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVD 244

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
            M  +GV PN V +  LM     +NE    +++  +M  +    NV+ Y +++
Sbjct: 245 MMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLI 297



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V ++T++D LCKEG +  A ++   M    + P+VVTY +L+ G C  ++ +EA  +
Sbjct: 706 PNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 765

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   +V ++N++++  C+ ++MD+A  LL+ M   G+  D       V Y  L
Sbjct: 766 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADT------VTYNTL 819

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC +G+L++A  L   +  +G +P++VTY I +  LC +  + +A  L   +E   +
Sbjct: 820 IHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNL 879

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + +++   +    R  E     +L  ++  + + P     +I++  L K
Sbjct: 880 DADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCK 930



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY  ++DG C    +D+A ++F  M  +   PNV +YN LI+G+C     ++A  
Sbjct: 740 EPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMG 799

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M  +GL +D VT+N ++  LC   ++  A  L   M+  G  PD      +V Y  
Sbjct: 800 LLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPD------LVTYRI 853

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D LCK   L  A  L +++  + L  +++ YNI I  +C   +++ A DLF ++  KG
Sbjct: 854 LLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKG 913

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           + P+   +  ++    ++    +  +L R MD+ ++ 
Sbjct: 914 LQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIW 950



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 19/240 (7%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+TV +  ++  + K         L  QM    I P+V T N LI+ 
Sbjct: 566 LSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINS 625

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+      A  +  +++  G Q DVVT+  +M+ LCK             MI  G+ PD
Sbjct: 626 FCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK-------------MITKGISPD 672

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            F       Y  LI  LC + + K+   L   +  + +MPNVV ++  + ALC +  +  
Sbjct: 673 IF------TYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAI 726

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           AHD+   M  +GV P+ V +T LM     ++E  + +++  +M  +  +P     +I+++
Sbjct: 727 AHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILIN 786



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 6/213 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D+A   F +M  +   P+ V +N L+         +    L  +M   G+  DV T  +
Sbjct: 26  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 85

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++ LC   ++D A   L  +++ G +PDA        +  LI GLC  GK+  A  L  
Sbjct: 86  VINSLCHLNRVDFAFSALAKILKLGHQPDA------TTFTTLIRGLCVEGKIGEALHLFD 139

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  PNVVTY   I+ LC D Q+ +A ++F +M  KG++PN V + +L+    +  
Sbjct: 140 KMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLC 199

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           E   V  L+  M    +MP    L+ +VD L K
Sbjct: 200 EWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK 232


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 139/251 (55%), Gaps = 8/251 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G+   PN V Y T+ID LCK G VD A   F QM DE + PN++ Y SLIHG C  +
Sbjct: 403 RQHGL--NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCD 460

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++AE L +EM+DRG+  + + FN I+D  CK  ++ E+ +L DLM++ GV+PD     
Sbjct: 461 KWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD----- 515

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            I+ Y  LIDG C  GK+  A +L  S+   G+ P++VTY   I+  C   +MD A  LF
Sbjct: 516 -IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALF 574

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M   GV+PN + +  ++        T+   EL  S+ K       S  +II+  L KN
Sbjct: 575 KEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKN 634

Query: 246 EISLNSIPQFN 256
            ++  ++  F 
Sbjct: 635 NLTDEALRMFQ 645



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 9/238 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGN 68
           C P+  +YN ++ GLC E    +A EL   M D+      P+VV+YN++++GF    D +
Sbjct: 159 CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSD 218

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A   + EM+DRG+  DVVT++ I+  LCK + MD+A  +L+ M++ GV PD       +
Sbjct: 219 KAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC------M 272

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  ++ G C  G+ K A    + +   G+ PNVVTY+  ++ LC + +  +A  +F  M
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +G+ P+   + TL+  +  K    ++  LL  M +  + P   + +I++    K E
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQE 390



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY+++++ LCK G   +A+++F  M    + P++ TY +L+ G+       E   
Sbjct: 303 EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHA 362

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+  G+Q D   FN+++    K  K+D+A  +   M Q G+ P      N+V YG 
Sbjct: 363 LLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNP------NVVCYGT 416

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK G + +A    + +   GL PN++ Y   IH LC  ++ DKA +L L+M  +G
Sbjct: 417 VIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRG 476

Query: 193 VAPNCVIFTTLMPSFIRKN---ETSKVIELL-RSMDKRNVMPYASIL 235
           +  N + F +++ S  ++    E+ K+ +L+ R   K +++ Y +++
Sbjct: 477 ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT+++G  KEG  DKA   + +M D  I P+VVTY+S+I   C A   ++A  +
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G+  D +T+N I+   C + +  EA   L  M   GV P      N+V Y  L
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEP------NVVTYSSL 312

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-G 192
           ++ LCK G+   AR++  S+T+ GL P++ TY   +        + + H L LD+ V+ G
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHAL-LDLMVRNG 371

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+  +F  L+ ++ ++ +  + + +   M +  + P       ++D+L K+
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYNT+IDG C  G +D+A +L   M    + P++VTY +LI+G+C  +  ++A  
Sbjct: 513 KPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALA 572

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+  G+  +++T+N+I+  L   R+   A  L   + + G       ++ +  Y  
Sbjct: 573 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGT------QLELSTYNI 626

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK      A  + Q+L    L     T+NI I AL    +MD+A DLF      G
Sbjct: 627 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANG 686

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+   ++ +  + I +    ++ +L  SM++      + +L SI+  LL + +I+
Sbjct: 687 LVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDIT 743



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY++II  LCK   +DKA E+   M    + P+ +TYNS++HG+C +    EA   
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 293

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ +VVT++ +M+ LCKN +  EA ++ D M + G+ PD      I  Y  L
Sbjct: 294 LKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD------IATYRTL 347

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ P+   +NI I A    E++D+A  +F  M   G+
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V + T++    +       +     M    + P
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  KP+ VTY T+I+G C+   +D A  LF +M    ++PN++TYN ++ G  +      
Sbjct: 545 VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAA 604

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ L++ +   G Q ++ T+N+I+  LCKN   DEA R    M Q     D   ++    
Sbjct: 605 AKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALR----MFQNLCLTD--LQLETRT 658

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  +I  L K G++  A++L  + +  GL+P+V TY++    L     +++  DLFL ME
Sbjct: 659 FNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSME 718

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             G + +  +  +++   +++ + ++    L  +D+++    AS  S +++
Sbjct: 719 ENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 10/247 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P   TY  +I   C+ G +D        +  +    + +T+  L+ G C     ++A + 
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ---GGVRPDAFCEINIVA 129
           +   M + G   DV ++N ++  LC   +  EA  LL +M     GG  PD      +V+
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPD------VVS 203

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +++G  K G    A      +   G++P+VVTY+  I ALC  + MDKA ++   M 
Sbjct: 204 YNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMV 263

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             GV P+C+ + +++  +    +  + I  L+ M    V P     S +++ L KN  S 
Sbjct: 264 KNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRST 323

Query: 250 NSIPQFN 256
            +   F+
Sbjct: 324 EARKIFD 330



 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 9/158 (5%)

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRPDAFCEIN 126
           +A ++F E++ RG  + +   N  + ++ ++      +R   +   G   V P       
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTP------T 91

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LI   C+ G+L        ++ + G   + +T+   +  LC D++   A D+ L
Sbjct: 92  VHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVL 151

Query: 187 -DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             M   G  P+   +  L+     +N + + +ELL  M
Sbjct: 152 RRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMM 189


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 139/251 (55%), Gaps = 8/251 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G+   PN V Y T+ID LCK G VD A   F QM DE + PN++ Y SLIHG C  +
Sbjct: 403 RQHGL--NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCD 460

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++AE L +EM+DRG+  + + FN I+D  CK  ++ E+ +L DLM++ GV+PD     
Sbjct: 461 KWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD----- 515

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            I+ Y  LIDG C  GK+  A +L  S+   G+ P++VTY   I+  C   +MD A  LF
Sbjct: 516 -IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALF 574

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M   GV+PN + +  ++        T+   EL  S+ K       S  +II+  L KN
Sbjct: 575 KEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKN 634

Query: 246 EISLNSIPQFN 256
            ++  ++  F 
Sbjct: 635 NLTDEALRMFQ 645



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 9/238 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGN 68
           C P+  +YN ++ GLC E    +A EL   M D+      P+VV+YN++++GF    D +
Sbjct: 159 CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSD 218

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A   + EM+DRG+  DVVT++ I+  LCK + MD+A  +L+ M++ GV PD       +
Sbjct: 219 KAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC------M 272

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  ++ G C  G+ K A    + +   G+ PNVVTY+  ++ LC + +  +A  +F  M
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +G+ P+   + TL+  +  K    ++  LL  M +  + P   + +I++    K E
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQE 390



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY+++++ LCK G   +A+++F  M    + P++ TY +L+ G+       E   
Sbjct: 303 EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHA 362

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+  G+Q D   FN+++    K  K+D+A  +   M Q G+ P      N+V YG 
Sbjct: 363 LLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNP------NVVCYGT 416

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK G + +A    + +   GL PN++ Y   IH LC  ++ DKA +L L+M  +G
Sbjct: 417 VIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRG 476

Query: 193 VAPNCVIFTTLMPSFIRKN---ETSKVIELL-RSMDKRNVMPYASIL 235
           +  N + F +++ S  ++    E+ K+ +L+ R   K +++ Y +++
Sbjct: 477 ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT+++G  KEG  DKA   + +M D  I P+VVTY+S+I   C A   ++A  +
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G+  D +T+N I+   C + +  EA   L  M   GV P      N+V Y  L
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEP------NVVTYSSL 312

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++ LCK G+   AR++  S+T+ GL P++ TY   +        + + H L   M   G+
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+  +F  L+ ++ ++ +  + + +   M +  + P       ++D+L K+
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY++II  LCK   +DKA E+   M    + P+ +TYNS++HG+C +    EA   
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 293

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ +VVT++ +M+ LCKN +  EA ++ D M + G+ PD      I  Y  L
Sbjct: 294 LKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD------IATYRTL 347

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ P+   +NI I A    E++D+A  +F  M   G+
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V + T++    +       +     M    + P
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYNT+IDG C  G +D+A +L   M    + P++VTY +LI+G+C  +  ++A  
Sbjct: 513 KPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALA 572

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+  G+  +++T+N+I+  L   R+   A  L   + + G       ++ +  Y  
Sbjct: 573 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGT------QLELSTYNI 626

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK      A  + Q+L    L     T+NI I AL    +MD+A DLF      G
Sbjct: 627 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANG 686

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+   ++ +  + I +    ++ +L  SM++      + +L SI+  LL + +I+
Sbjct: 687 LVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDIT 743



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  KP+ VTY T+I+G C+   +D A  LF +M    ++PN++TYN ++ G  +      
Sbjct: 545 VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAA 604

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ L++ +   G Q ++ T+N+I+  LCKN   DEA R    M Q     D   ++    
Sbjct: 605 AKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALR----MFQNLCLTD--LQLETRT 658

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  +I  L K G++  A++L  + +  GL+P+V TY++    L     +++  DLFL ME
Sbjct: 659 FNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSME 718

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             G + +  +  +++   +++ + ++    L  +D+++    AS  S +++
Sbjct: 719 ENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 10/247 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P   TY  +I   C+ G +D        +  +    + +T+  L+ G C     ++A + 
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ---GGVRPDAFCEINIVA 129
           +   M + G   DV ++N ++  LC   +  EA  LL +M     GG  PD      +V+
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPD------VVS 203

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +++G  K G    A      +   G++P+VVTY+  I ALC  + MDKA ++   M 
Sbjct: 204 YNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMV 263

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             GV P+C+ + +++  +    +  + I  L+ M    V P     S +++ L KN  S 
Sbjct: 264 KNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRST 323

Query: 250 NSIPQFN 256
            +   F+
Sbjct: 324 EARKIFD 330



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 9/158 (5%)

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRPDAFCEIN 126
           +A ++F E++ RG  + +   N  + ++ ++      +R   +   G   V P       
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTP------T 91

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LI   C+ G+L        ++ + G   + +T+   +  LC D++   A D+ L
Sbjct: 92  VHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVL 151

Query: 187 -DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             M   G  P+   +  L+     +N + + +ELL  M
Sbjct: 152 RRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMM 189


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/233 (38%), Positives = 133/233 (57%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN VTYNTIID LCK+  V+ A +   +M    I P+ +TYNS++HG C     NEA 
Sbjct: 229 CKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEAT 288

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M   G + DVVT+N+I+D L K+R +++A   L  M+  G+ PD      +V Y 
Sbjct: 289 RLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPD------VVTYT 342

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLC +G+L  A  L + + + G  P+VV YN  I +LC D  ++ A +   +M  +
Sbjct: 343 TILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDR 402

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ PN V ++T++  F    +  +  +L + M  RNVMP     SI+VD L +
Sbjct: 403 GIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQ 455



 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 128/234 (54%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ V YNTIID LCK+  V+ A E   +M D  I PN VTY++++HGFC     +EA 
Sbjct: 369 CKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEAT 428

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ R +  + +TF++++D LC+   + EA  + + M + GV P      NI  Y 
Sbjct: 429 QLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEP------NIYTYN 482

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++G C   K+  AR++ + +   G  P++ +YNI I+  CN  +MDKA  L   M VK
Sbjct: 483 ALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVK 542

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + PN V + T+M             EL + M    ++P     SI+++ L K+
Sbjct: 543 KLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKH 596



 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 140/242 (57%), Gaps = 6/242 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           + F +  +P+ +T+ T+I+G+C EG +  A EL+ +M      P+V++YN+LI+G C + 
Sbjct: 153 KMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSG 212

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + N A ++F +M   G + +VVT+N I+D LCK+R +++A   L  M+  G+ PDA    
Sbjct: 213 NTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDA---- 268

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             + Y  ++ GLC +G+L  A  L + + + G  P+VVTYNI I +L  D  ++ A D  
Sbjct: 269 --ITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFL 326

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M  +G+ P+ V +TT++       + ++ I L + M+++   P     + I+D L K+
Sbjct: 327 SEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKD 386

Query: 246 EI 247
            +
Sbjct: 387 RL 388



 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 140/246 (56%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT+T++ ++DGLC+EG V +A+ +F  M ++ + PN+ TYN+L++G+C     NEA  +
Sbjct: 441 PNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKV 500

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   D+ ++N++++  C +R+MD+A  LL  M    + P      N V Y  +
Sbjct: 501 FEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTP------NTVTYNTI 554

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC +G+L +A+EL + +  +G++P ++TY+I ++ LC    +D+A  LF  M+ K +
Sbjct: 555 MKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKL 614

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ +++T L+       +      L   +    + P     ++++  L+K  +S  +  
Sbjct: 615 EPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYE 674

Query: 254 QFNRQK 259
            F + K
Sbjct: 675 LFRKWK 680



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 101/177 (57%), Gaps = 6/177 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+  +YN +I+G C    +DKAK L  QM  + + PN VTYN+++ G CY     
Sbjct: 506 GKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLL 565

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A+ LF +M   G+   ++T++++++ LCK+  +DEA +L   M +  + PD      I+
Sbjct: 566 DAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPD------II 619

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            Y  LI+G+   GKL+ A+ L   L+  G+ P   TYN+ I  L  +   D+A++LF
Sbjct: 620 LYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 6/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V +   +  + K         L  QM    +   V + N LI+  C  N  + A  
Sbjct: 90  RPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVS 149

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M   G+Q DV+TF  +++ +C   K+  A  L + M++ G  PD      +++Y  
Sbjct: 150 VWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPD------VISYNT 203

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLC  G    A  + + + + G  PNVVTYN  I +LC D  ++ A D   +M  +G
Sbjct: 204 LINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRG 263

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           + P+ + + +++       + ++   L + M++    P     +II+D L K+ +
Sbjct: 264 IPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRL 318



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 6/211 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           VD A   F +M   N  P++V +   +         +   YL  +M   G+   V + N+
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++ LC+   +D A  +   M + G++PD      ++ +  LI+G+C  GK+K A EL  
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPD------VITFTTLINGVCNEGKIKVAVELYN 187

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            + R+G  P+V++YN  I+ LCN    + A  +F  ME  G  PN V + T++ S  +  
Sbjct: 188 EMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDR 247

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             +  ++ L  M  R + P A   + IV  L
Sbjct: 248 LVNDAMDFLSEMVGRGIPPDAITYNSIVHGL 278



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 6/174 (3%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M     +  +V F   +  + K ++      L + M   GV    +  +NI     L
Sbjct: 81  FYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVY-SLNI-----L 134

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ LC++  +  A  +   + + G+ P+V+T+   I+ +CN+ ++  A +L+ +M   G 
Sbjct: 135 INCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGH 194

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            P+ + + TL+        T+  + + + M++    P     + I+D L K+ +
Sbjct: 195 EPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRL 248


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 149/238 (62%), Gaps = 14/238 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YNTIIDGLCK+  V++A +L+ +M    I PNV+TY++LI+GFC A    EA  
Sbjct: 147 RPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFG 206

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+ + +  +V T+ ++MD LCK  K+ EA  LL +M + GV+P      N+V+Y  
Sbjct: 207 LLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKP------NVVSYNT 260

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C IG+++NA+++  ++ + G+ PNV +YNI I  LC  +++D+A +L  ++  K 
Sbjct: 261 LMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKN 320

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVKNE 246
           + PN V +++L+  F +    +  ++LL+ M  R    +V+ Y S+L    D L KN+
Sbjct: 321 MVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLL----DALCKNQ 374



 Score =  153 bits (386), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 85/218 (38%), Positives = 124/218 (56%), Gaps = 6/218 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +YN +ID LCK   VD+A  L  ++  +N+ PN VTY+SLI GFC       A  L
Sbjct: 288 PNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDL 347

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG  +DVVT+  ++D LCKN+ +D+AT L   M + G++P+ +       Y  L
Sbjct: 348 LKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKY------TYTAL 401

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+ KNA++L Q L   G   NV TYN+ I  LC +  +D+A  +   ME  G 
Sbjct: 402 IDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGC 461

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
            P+ V F  ++ S   K++  K  +LL  M  ++++ +
Sbjct: 462 IPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDLLRF 499



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N I+  L K      A  LF QM+ + I P++ T N LI+ FC+      +  +
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  G Q + +T N +M  LC   ++ ++    D ++  G + D       V+Y  L
Sbjct: 68  LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQ------VSYATL 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCKIG+ ++A +L + +      PNVV YN  I  LC D+ +++A+DL+ +M+ +G+
Sbjct: 122 LNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN + ++TL+  F    +  +   LL  M  +N+ P     +I++D L K
Sbjct: 182 FPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCK 232



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 2/108 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  +PN  TY  +IDGLCK G    A++LF  +  +    NV TYN +I G C   
Sbjct: 387 KERGI--QPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEG 444

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
             +EA  +  +M + G   D VTF +I+  L +  + D+A +LL  MI
Sbjct: 445 MLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMI 492



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           ++ FN I+  L K +    A  L   M   G+ PD F  +NI     LI+  C +G++  
Sbjct: 10  IMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFT-LNI-----LINCFCHLGQMTF 63

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           +  +   + + G  PN +T N  +  LC   ++ K+      +  +G   + V + TL+ 
Sbjct: 64  SFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLN 123

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              +  ET   ++LLR ++ R+  P   + + I+D L K+++
Sbjct: 124 GLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKL 165



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N  TYN +I GLCKEG +D+A  +  +M++    P+ VT+  +I      +  ++AE
Sbjct: 426 CRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAE 485

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
            L  EM+ +    D++ F     E   N   D+A +LL  MI  G+
Sbjct: 486 KLLHEMIAK----DLLRFRDFHGERSPNEN-DKAEKLLHEMIAKGL 526


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 158/314 (50%), Gaps = 67/314 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+N +ID LCKEG V +AK+L   M +  I P++VTYNSLI GFC   D N A  
Sbjct: 257 QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARE 316

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL---------------DLMIQG-- 115
           LF+ M  +G + DV+++NV+++   K  K++EA +L                D +++G  
Sbjct: 317 LFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIF 376

Query: 116 ---------------------------GVRPDAFCE--------------------INIV 128
                                      G+  D  C+                    + I 
Sbjct: 377 LAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIE 436

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
              CLIDGLCK GKL+ A EL + L+  G  PNVVTY I IH  C + Q+DKA+ L   M
Sbjct: 437 NLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKM 496

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI- 247
           E  G  P+ + + TLM  F   N+  +V++LL  M +++V P A   SI+VD+L K+E  
Sbjct: 497 EANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKY 556

Query: 248 --SLNSIPQFNRQK 259
              L+ +P+F  QK
Sbjct: 557 QECLHLLPRFPIQK 570



 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 140/264 (53%), Gaps = 22/264 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE------NINPNVVTYNSLIHGFCYAN 65
           C P+ VTY T+I GLC  G ++ A +L  +M ++      N  PNV+TYN ++ G C   
Sbjct: 170 CTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVG 229

Query: 66  DGNEAEYLFIEM----------MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
             +EA+ LF EM          +D+GLQ D+VTFNV++D LCK  K+ EA +LL +MI+ 
Sbjct: 230 REDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES 289

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G+ PD      +V Y  LI+G C +G L +AREL  S+   G  P+V++YN+ I+     
Sbjct: 290 GIVPD------LVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKT 343

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            ++++A  L+ +M + G  PN + + +L+       +     +L   M    +   +   
Sbjct: 344 LKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTY 403

Query: 236 SIIVDLLVKNEISLNSIPQFNRQK 259
            I +D L KN+    ++  F   K
Sbjct: 404 GIFLDGLCKNDCLFEAMKLFTELK 427



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T N +++ LC    + +    F  +     +PN+VTYN+LI G C  +  +EA  LF+ M
Sbjct: 106 TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM 165

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
              G   DVVT+  ++  LC    ++ A +L   M+    R +  C+ N++ Y  ++DGL
Sbjct: 166 QKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGL 225

Query: 138 CKIGKLKNARELSQSLTRAGLMPN----------VVTYNITIHALCNDEQMDKAHDLFLD 187
           CK+G+   A++L + +   G++PN          +VT+N+ I  LC + ++ +A  L   
Sbjct: 226 CKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGV 285

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M   G+ P+ V + +L+  F    + +   EL  SM  +   P
Sbjct: 286 MIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEP 328



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 22/233 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  ++N ++ GL K     +   L+ QM+   ++ +  T N L++  C  N   E    
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAA 126

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  ++ RG   ++VT+N ++  LC   ++ EATRL   M + G  PD      +V YG L
Sbjct: 127 FAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPD------VVTYGTL 180

Query: 134 IDGLCKIGKLKNARELSQ------SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           I GLC  G +  A +L Q      S       PNV+TYNI +  LC   + D+A  LF +
Sbjct: 181 IKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEE 240

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKN-------ETSKVIE---LLRSMDKRNVMP 230
           M+ +G+ PN ++   L P  +  N       +  KVIE   LL  M +  ++P
Sbjct: 241 MKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVP 293


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 125/201 (62%), Gaps = 6/201 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M NGN +FG+ CKP  V+Y+ IID LCK+G V++AKE F++MK++ I PNVVTY SL+HG
Sbjct: 238 MINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHG 297

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C A++  EA+ LFIEM+D GL  DVVTF+V++  LCK  K+ EA+ L DLM+Q  V P 
Sbjct: 298 LCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPS 357

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                    Y  LI+G C  G +   +++  S+       +  +Y+I + A C D ++  
Sbjct: 358 T------RTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHG 411

Query: 181 AHDLFLDMEVKGVAPNCVIFT 201
           A  L+ +M  +G+ P  + ++
Sbjct: 412 AMILYREMMDRGIQPTVITYS 432



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/278 (37%), Positives = 149/278 (53%), Gaps = 37/278 (13%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T TYN +I+G C  G VD+ K++FL M ++    +  +Y+ L+  +C  ++ + A  
Sbjct: 355 EPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMI 414

Query: 73  LFIEMMDRGLQSDVVTF----------------------------NVIMDELCKNRKMDE 104
           L+ EMMDRG+Q  V+T+                            NV +D LCKN  + E
Sbjct: 415 LYREMMDRGIQPTVITYSKVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSE 474

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           A   LD+    G+    F   N+  +  LI+G+C+  KL+ A EL   L    L P+VVT
Sbjct: 475 A---LDVFY--GLENCKFAS-NVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVT 528

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y I I+ LC   Q  KA+DLFL+ME KG APN V F TLM      +E  K++ELL  M 
Sbjct: 529 YTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMA 588

Query: 225 KRNVMPYASILSIIVDLLVKNE---ISLNSIPQFNRQK 259
            R + P AS L I++D+L+K+E     LN +P F  Q+
Sbjct: 589 ARKLSPDASTLLIVMDILLKDENYHECLNLLPTFPVQE 626



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 12/235 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM----KDENIN--PNVVTYNSLIHGFCYAN 65
           C+P+ +T   +I GLC+ G    A +L   M     D  IN  P VV+Y+ +I   C   
Sbjct: 208 CRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDG 267

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A+  F+EM ++G+  +VVT+  ++  LC   + +EA RL   M+  G+ PD     
Sbjct: 268 LVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPD----- 322

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V +  LI  LCK+GK+K A  L   + +  + P+  TYNI I   C    +D+   +F
Sbjct: 323 -VVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIF 381

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           L M  K    +   ++ LM ++ + +E    + L R M  R + P     S + D
Sbjct: 382 LSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKVGD 436



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 10/231 (4%)

Query: 15  NTVTYNTIIDGLCK-----EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           N ++ N +++ LC      EGFV     +F  +  +   PN  T+ +L+ G C      E
Sbjct: 141 NFISLNILLNCLCSVKRVFEGFV-----VFGMILRKGYRPNTRTFTNLVKGLCLEGKIGE 195

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  +F  M     +   +T  V++  LC+      A +L + MI G       C+  +V+
Sbjct: 196 AVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVS 255

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y C+ID LCK G ++ A+E    +   G+ PNVVTY   +H LC+  + ++A  LF++M 
Sbjct: 256 YSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMV 315

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             G+ P+ V F+ L+ +  +  +  +   L   M +R V P     +I+++
Sbjct: 316 DHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIE 366



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 12/240 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNT T+  ++ GLC EG + +A  +F  M   +  P+ +T   LI G C   +   A  
Sbjct: 174 RPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALK 233

Query: 73  LFIEMM----DRGL--QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
           L   M+    D G+  +  VV+++ I+D LCK+  ++ A      M + G+ P      N
Sbjct: 234 LHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFP------N 287

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  L+ GLC   + + A+ L   +   GL+P+VVT+++ I ALC   ++ +A  LF 
Sbjct: 288 VVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFD 347

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M  + V P+   +  L+  +       +  ++  SM  +     A   SI++    K+ 
Sbjct: 348 LMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDS 407



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 12/237 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N +   L K+        +  +M    +  N ++ N L++  C      E   +
Sbjct: 105 PALSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVV 164

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  ++ +G + +  TF  ++  LC   K+ EA R+  +M     RP A      +  G L
Sbjct: 165 FGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSA------ITCGVL 218

Query: 134 IDGLCKIGKLKNARELSQSLTRAG------LMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           I GLC+ G   NA +L +++            P VV+Y+  I +LC D  +++A + F++
Sbjct: 219 ISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVE 278

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M+ KG+ PN V +T+L+      +E  +   L   M    ++P     S+++  L K
Sbjct: 279 MKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCK 335


>gi|296087908|emb|CBI35191.3| unnamed protein product [Vitis vinifera]
          Length = 248

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/231 (39%), Positives = 136/231 (58%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  +YNT+I+G CK   +DKA  LF +M  + + PN VTYN+LIHG C+     +A 
Sbjct: 6   CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAI 65

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G   D+VT+ +++D LCKN  +D+A  LL  +    + PD      I  Y 
Sbjct: 66  ALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPD------IQIYT 119

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG+C+ G+L++AR+L  +L+  GL PNV TYNI  H LC    +D+A  LF++M+  
Sbjct: 120 IVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDEN 179

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             + +   + T+   F+R NETS+ I+LL  M  R      S  +++V +L
Sbjct: 180 ACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGML 230



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+ +G   +V ++N +++  CK  +MD+A  L + M +  + P      N V Y  LI G
Sbjct: 1   MVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIP------NTVTYNTLIHG 54

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LC +G+L++A  L + +   G +P++VTY I +  LC +  +DKA  L   +E   + P+
Sbjct: 55  LCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPD 114

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             I+T ++    R  E     +L  ++  + + P     +I+   L K
Sbjct: 115 IQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCK 162



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 43/93 (46%)

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G  PNV +YN  I+  C  E+MDKA  LF +M  + + PN V + TL+        
Sbjct: 1   MVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGR 60

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               I L R M     +P      I++D L KN
Sbjct: 61  LQDAIALFREMVACGQIPDLVTYRILLDYLCKN 93


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/231 (39%), Positives = 136/231 (58%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  +YNT+I+G CK   +DKA  LF +M  + + PN VTYN+LIHG C+     +A 
Sbjct: 350 CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAI 409

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G   D+VT+ +++D LCKN  +D+A  LL  +    + PD      I  Y 
Sbjct: 410 ALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPD------IQIYT 463

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG+C+ G+L++AR+L  +L+  GL PNV TYNI  H LC    +D+A  LF++M+  
Sbjct: 464 IVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDEN 523

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             + +   + T+   F+R NETS+ I+LL  M  R      S  +++V +L
Sbjct: 524 ACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGML 574



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 29/258 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ V Y T+I  LCK+    +A  LF +M  + I+PN+VT NSL++  C   +     
Sbjct: 210 CQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVN 269

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            L  EM+D  +  + ++   ++D LCK   + +A  ++D+M Q GV PD           
Sbjct: 270 TLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGH 329

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C  N+ +Y  LI+G CKI ++  A  L + + R  L+PN 
Sbjct: 330 CLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNT 389

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTYN  IH LC+  ++  A  LF +M   G  P+ V +  L+    +     K + LL++
Sbjct: 390 VTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKA 449

Query: 223 MDKRNVMPYASILSIIVD 240
           ++  N+ P   I +I++D
Sbjct: 450 IEGSNLDPDIQIYTIVID 467



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN ++  T++D LCKEG V +A ++   M    + P+VVTY +LI G C  ++ +EA  +
Sbjct: 282 PNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKV 341

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   +V ++N +++  CK  +MD+A  L + M +  + P      N V Y  L
Sbjct: 342 FDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIP------NTVTYNTL 395

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC +G+L++A  L + +   G +P++VTY I +  LC +  +DKA  L   +E   +
Sbjct: 396 IHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNL 455

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+  I+T ++    R  E     +L  ++  + + P     +I+   L K
Sbjct: 456 DPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCK 506



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+ V +  I+  + K         L  +M    I  NV T N LI+ 
Sbjct: 59  LSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINS 118

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+ N  N A  +  +++  G Q D  +F  ++  LC   ++ EA  L D MI  G +PD
Sbjct: 119 FCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPD 178

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +V Y  LI+GLCK G    A  L +S+ +    P+VV Y   IH+LC D Q  +
Sbjct: 179 ------VVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQ 232

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF +M  KG++PN V   +L+ +     E   V  LL  M    +MP A  L+ +VD
Sbjct: 233 AFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVD 292

Query: 241 LLVK 244
            L K
Sbjct: 293 ALCK 296



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 6/193 (3%)

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           +N     + + N  ++A   F  M+       +V F  I+  + K ++      L   M 
Sbjct: 42  HNRFRSKYLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMD 101

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             G+        N+     LI+  C + ++  A  +   + + G  P+  ++   I  LC
Sbjct: 102 SFGIPH------NVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLC 155

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            + Q+ +A  LF  M  +G  P+ VI+ TL+    +   TS  I LLRSM+K N  P   
Sbjct: 156 LEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVV 215

Query: 234 ILSIIVDLLVKNE 246
           +   ++  L K+ 
Sbjct: 216 VYGTLIHSLCKDR 228


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 137/231 (59%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN ++Y+T+I+G CK   +DKA  LF +M    + PN+VTYN+LIHG C+     +A 
Sbjct: 350 CAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAI 409

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G   D+VT+ +++D LCK R +D+A  +L  +    + PD      I +Y 
Sbjct: 410 ALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPD------IQSYN 463

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG+C++G+L+ A +L  SL+  GL P+V TY I I+ LC    + +A  LF +M   
Sbjct: 464 IVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTD 523

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G +P+   +  +   F+R NET   I+LL+ M  R     AS +++IV++L
Sbjct: 524 GCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEML 574



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 134/258 (51%), Gaps = 29/258 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN +TYNTIID L K+  V++A  +F +M  + I+PNV TYNS+IHG C  ++     
Sbjct: 210 CEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVA 269

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            L  EM+D  +  +VV F  ++D LCK   +  A  ++D+MIQ GV PD           
Sbjct: 270 TLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGH 329

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C  N+++Y  LI+G CKI ++  A  L + + +  L+PN+
Sbjct: 330 CLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNI 389

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTYN  IH LC+  ++  A  LF +M   G  P+ V +  L+    +     + + +L++
Sbjct: 390 VTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKA 449

Query: 223 MDKRNVMPYASILSIIVD 240
           ++  N+ P     +I++D
Sbjct: 450 IEGSNLAPDIQSYNIVID 467



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+ T+I GLC EG + +A  LF +M  E   PN VTY +LIHG C   +   A  
Sbjct: 141 QPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIR 200

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ +  + +V+T+N I+D L K+R+++EA  +   MI  G+ P      N+  Y  
Sbjct: 201 LLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISP------NVSTYNS 254

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLCK  + K+   L   +  + +MPNVV +   + ALC +  +  AHD+   M  +G
Sbjct: 255 IIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRG 314

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           V P+ V +T LM     ++E  +  ++  +M ++    NV+ Y++++
Sbjct: 315 VEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLI 361



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 117/244 (47%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+ V +  I+  +           L  QM    I  +V T   +I+ 
Sbjct: 59  LSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINS 118

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+ N  +    +  ++   G Q D  TF  ++  LC   K+ EA  L D M+  G +P 
Sbjct: 119 FCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQP- 177

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N V YG LI GLCK+G  + A  L +S+ +    PNV+TYN  I  L  D Q+++
Sbjct: 178 -----NGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNE 232

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A ++F +M  KG++PN   + +++    + +E   V  L+  M    +MP   I + +VD
Sbjct: 233 ALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVD 292

Query: 241 LLVK 244
            L K
Sbjct: 293 ALCK 296



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+  TY  +I+GLC +G + +A +LF +M  +  +P+  TYN +  GF   N+   A  
Sbjct: 491 HPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQ 550

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
           L  EM+ RG  +D  T  +I+ E+  +  +D++ +
Sbjct: 551 LLQEMLGRGFSADASTITLIV-EMLSDDGLDQSVK 584



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 6/182 (3%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           N  +EA   F  M+       VV F  I+  +   +       L   M   G+  D +  
Sbjct: 53  NTIDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVY-- 110

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                   +I+  C + ++     +   + + G  P+  T+   I  LC + ++ +A  L
Sbjct: 111 ----TLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHL 166

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M  +G  PN V + TL+    +   +   I LLRSM ++N  P     + I+D L K
Sbjct: 167 FDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFK 226

Query: 245 NE 246
           + 
Sbjct: 227 DR 228


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 133/234 (56%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN V YNTIID LCK+  V +A + F +M  E I P+V TY+S++HGFC     NEA 
Sbjct: 76  CKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEAT 135

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M++R +  + VTF +++D LCK R + EA  + + M + G+ PD +       Y 
Sbjct: 136 SLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVY------TYN 189

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C   ++  A++L   + R G  PNV +YNI I+  C   ++D+A  L  +M  K
Sbjct: 190 ALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHK 249

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + P+   ++TLM  F +     +  ELL+ M    ++P     SI++D L K+
Sbjct: 250 SLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKH 303



 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 10/246 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  +YN +I+G CK G +D+AK L  +M  +++ P++ TY++L+ GFC      EA+
Sbjct: 216 CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQ 275

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM   GL  +++T+++++D LCK+  +DEA  LL  M +  + P      NI  Y 
Sbjct: 276 ELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEP------NIFIYT 329

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G+C  GKL+ AREL  +L   G+ P VVTY + I  L      ++A +LF +M V 
Sbjct: 330 ILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVN 389

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  PN   +  ++  F+R  +T   + L+  M  +     +S   ++ DL   +EI    
Sbjct: 390 GCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSDLESSDEI---- 445

Query: 252 IPQFNR 257
           I QF R
Sbjct: 446 ISQFMR 451



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 124/252 (49%), Gaps = 29/252 (11%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  +P  VT+NT++ GLC +  +  A +LF +M      P+V+TY+++I+G C   + 
Sbjct: 2   FKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNT 61

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------- 120
             A  L  +M ++G + +VV +N I+D LCK+R + EA      M++ G+ PD       
Sbjct: 62  TMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSI 121

Query: 121 --AFCEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              FC +                    N V +  LIDGLCK   +  A  + +++T  GL
Sbjct: 122 LHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGL 181

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+V TYN  +   C+  QMD+A  LF  M+ KG APN   +  L+    +     +   
Sbjct: 182 EPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKG 241

Query: 219 LLRSMDKRNVMP 230
           LL  M  +++ P
Sbjct: 242 LLAEMSHKSLTP 253



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 6/171 (3%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   GLQ  +VTFN ++  LC   K+ +A +L D M++ G  PD      ++ Y  +I+G
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPD------VITYSTIING 54

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK+G    A +L + +   G  PNVV YN  I +LC D  + +A D F +M  +G+ P+
Sbjct: 55  LCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPD 114

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              +++++  F      ++   L + M +RNV+P     +I++D L K  +
Sbjct: 115 VFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRM 165



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 54/103 (52%)

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           + GL P +VT+N  +  LC+  ++  A  LF +M   G  P+ + ++T++    +   T+
Sbjct: 3   KLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTT 62

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
             ++LL+ M+++   P     + I+D L K+ +   ++  F+ 
Sbjct: 63  MALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSE 105


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 137/243 (56%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +ID LCK G VD A   F QM DE + P++  ++SL++G C  +   +AE L
Sbjct: 375 PNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEEL 434

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E++D+G++ D V FN +M  LC+  ++ EA RL+DLM++ GVRPD      +++Y  L
Sbjct: 435 FFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPD------VISYNTL 488

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG C  G++  A +L   +   GL P+ VTYN  +H  C   ++D A+ LF +M +KG+
Sbjct: 489 VDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGL 548

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V + T++    +    S+  EL  SM            +II++ L KN     +  
Sbjct: 549 TPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFK 608

Query: 254 QFN 256
            F+
Sbjct: 609 MFH 611



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 135/244 (55%), Gaps = 8/244 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT++ G CK   +D A  LF +M  + + P+VVTYN+++HG       +EA+ 
Sbjct: 514 KPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKE 573

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M++   Q ++ T+N+I++ LCKN  +DEA ++   +    ++ D F   NI     
Sbjct: 574 LYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTA-NI----- 627

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K G+ ++A +L  +++  GL+P+V TY +    L  +  +++  +LF  ME  G
Sbjct: 628 MIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENG 687

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS--LN 250
            APN  +   L+   + + + ++    L  +D++N    AS  S+++ +  + E      
Sbjct: 688 TAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLISIYSRGEYQQLAK 747

Query: 251 SIPQ 254
           S+P+
Sbjct: 748 SLPE 751



 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 6/234 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  +P+ ++YNT++DG C  G +D+A +L   +    + P+ VTYN+L+HG+C A   ++
Sbjct: 476 VGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDD 535

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  LF EM+ +GL  DVVT+N I+  L +  +  EA  L   MI      ++  ++NI  
Sbjct: 536 AYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMI------NSRTQMNIYT 589

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I+GLCK   +  A ++  SL    L  ++ T NI I AL    + + A DLF  + 
Sbjct: 590 YNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATIS 649

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
             G+ P+   +  +  + I++    ++ EL  +M++    P + +L+ +V  L+
Sbjct: 650 AYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLL 703



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+IDGLCK   VD+AK +F  M D+ + PN  TY  LIHG+       E   +
Sbjct: 200 PNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQM 259

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GLQ D   + V++D LCKN +  EA  + D +I+ G++P      N+  YG L
Sbjct: 260 LQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKP------NVTIYGIL 313

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L         +   G+ P+   +NI   A      +D+A  +F  M  + +
Sbjct: 314 LHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRL 373

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +PN V +  L+ +  +       +     M    + P   + S +V
Sbjct: 374 SPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLV 419



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 13/255 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCY 63
           EFG  C P+  +Y+ ++ G C E   ++A EL   M D+   +  PNVVTY ++I G C 
Sbjct: 157 EFG--CTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCK 214

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           A   + A+ +F  M+D+G++ +  T+  ++       K  E  ++L  M   G++PD + 
Sbjct: 215 AQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYI 274

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                 Y  L+D LCK G+   AR +  S+ R G+ PNV  Y I +H    +  + + H 
Sbjct: 275 ------YAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHS 328

Query: 184 LFLDMEV-KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            FLD+ V  GV+P+  IF  +  ++ +K    + + +   M ++ + P       ++D L
Sbjct: 329 -FLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDAL 387

Query: 243 VKNEISLNSIPQFNR 257
            K     +++ +FN+
Sbjct: 388 CKLGRVDDAVLKFNQ 402



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 15/268 (5%)

Query: 1   MANGNREFGVVCKP-----NTVTYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTY 54
           + +G   FG++ K      +TV ++ ++ GLC    VD+A ++ L+ M +    P+V +Y
Sbjct: 108 LKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSY 167

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQS---DVVTFNVIMDELCKNRKMDEATRLLDL 111
           + L+ GFC      EA  L   M D G  S   +VVT+  ++D LCK + +D A  +   
Sbjct: 168 SILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQH 227

Query: 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           MI  GVRP      N   Y CLI G   IGK K   ++ Q ++  GL P+   Y + +  
Sbjct: 228 MIDKGVRP------NNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDY 281

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
           LC + +  +A ++F  +  KG+ PN  I+  L+  +  +   S++   L  M    V P 
Sbjct: 282 LCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPD 341

Query: 232 ASILSIIVDLLVKNEISLNSIPQFNRQK 259
             I +I+     K  +   ++  F++ +
Sbjct: 342 HHIFNIMFCAYAKKAMIDEAMHIFDKMR 369



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 17/181 (9%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           N+A  LF EM+     + V  FN ++  + + R    A+ L+  +    +R    C I +
Sbjct: 33  NDALKLFDEMLTHARPASVRAFNQLLTAVSRAR-CSSASELVVSLFNRMIRE---CSIKV 88

Query: 128 V----AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAH 182
                 Y  LI   C++G+LK+       + + G   N  V ++  +  LC+ +++D+A 
Sbjct: 89  APSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEAT 148

Query: 183 DLFL-DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM-------DKRNVMPYASI 234
           D+ L  M   G  P+   ++ L+  F  +    + +ELL  M          NV+ Y ++
Sbjct: 149 DILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTV 208

Query: 235 L 235
           +
Sbjct: 209 I 209


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 139/239 (58%), Gaps = 8/239 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV   P+ VTYNTIIDGLCK   VD+A+++F QM ++ + PN VTYN++I G C A +
Sbjct: 218 EMGV--SPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQE 275

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + AE +F +M+D+G++   VT+N I+D LCK + +D A  +   MI  GV+PD      
Sbjct: 276 VDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDH----- 330

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  +IDGLCK   +  A  + Q +   G+ P+ +TY I I  LC  + +D+A  +F 
Sbjct: 331 -VTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQ 389

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            M  KGV PN   +  L+  ++   +  +V++ ++ M   ++ P      +++D L KN
Sbjct: 390 QMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKN 448



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 133/232 (57%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+ID LCK G VD A   F QM +E + PN V +NSL++G C  +   + E L
Sbjct: 538 PNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEEL 597

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+EM+++G++ D+V FN ++  LCK  ++ EA RL+D M+  G++PD      +++Y  L
Sbjct: 598 FLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPD------VISYNTL 651

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C   ++  A +L   +  AGL PN+V+YN  +H  C   ++D A+ LF +M  KGV
Sbjct: 652 IDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGV 711

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P    + T++    R    S+  EL  +M K   +      SII+D   KN
Sbjct: 712 TPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKN 763



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 144/309 (46%), Gaps = 64/309 (20%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYNTIIDGLCK   VD A+ +F +M D+ + P+ VTYN++I G C A   + AE 
Sbjct: 257 KPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEG 316

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +F +M+DRG++ D VT+N I+D LCK + +D+A  +   MI  GV+P         D  C
Sbjct: 317 VFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLC 376

Query: 124 EINIV--------------------AYGCLIDG--------------------------- 136
           +   V                     Y CLI G                           
Sbjct: 377 KAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVF 436

Query: 137 --------LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
                   LCK GK   AR L  S+ R G+ P+V  Y I +H       + + HDL   M
Sbjct: 437 TYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLM 496

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
              G++PN  IF T++ ++ ++    +V+ +   M ++ + P       ++D L K    
Sbjct: 497 VANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRV 556

Query: 249 LNSIPQFNR 257
            +++ QFN+
Sbjct: 557 DDAVLQFNQ 565



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 132/240 (55%), Gaps = 12/240 (5%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM---KDENINPNVVTYNSLIHGFCYAND 66
           V C+   V+YNT++ GLC     ++A+EL   M   +D + +P+VV+YN +I+GF     
Sbjct: 149 VGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQ 208

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++A  LF+EM   G+  DVVT+N I+D LCK +++D A  +   M++ GV+P      N
Sbjct: 209 VDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKP------N 259

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  +IDGLCK  ++  A  + Q +   G+ P+ VTYN  I  LC  + +D+A  +F 
Sbjct: 260 NVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQ 319

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M  +GV P+ V + T++    +     K   + + M  + V P     +II+D L K +
Sbjct: 320 QMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQ 379



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 129/282 (45%), Gaps = 64/282 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNTIIDGLCK   VD+A+ +F QM D  + P+ VTYN++I G C A   ++AE 
Sbjct: 292 KPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEG 351

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC--------- 123
           +F +M+D+G++ D +T+ +I+D LCK + +D A  +   MI  GV+P+            
Sbjct: 352 VFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYL 411

Query: 124 --------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                               E ++  YG L+D LCK GK   AR L  S+ R G+ P+V 
Sbjct: 412 STGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVT 471

Query: 164 TYNITIHALCNDEQMDKAHDL-----------------------------------FLDM 188
            Y I +H       + + HDL                                   F+ M
Sbjct: 472 IYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKM 531

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + +G++PN V + TL+ +  +       +     M    V P
Sbjct: 532 KQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTP 573



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 138/273 (50%), Gaps = 31/273 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ ++YNT+IDG C    +D+A +L   M    + PN+V+YN+L+HG+C A   + A  
Sbjct: 642 KPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYC 701

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG---------GVRPDAFC 123
           LF EM+ +G+   V T+N I++ L ++ +  EA  L   MI+           +  D FC
Sbjct: 702 LFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFC 761

Query: 124 --------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                               +++I+ +  +IDGL K G+ ++A +L  ++   GL+P+VV
Sbjct: 762 KNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVV 821

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY +    L  +  +++   LF  ME  G APN  +   L+   + + E  +    L  +
Sbjct: 822 TYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKL 881

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLN--SIPQ 254
           D++N    AS  S+++ L  + E   +  S+P+
Sbjct: 882 DEKNFSLEASTTSMLISLFSREEYQQHAKSLPE 914



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 128/297 (43%), Gaps = 64/297 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF----------- 61
           +P+  TY  ++D LCK G  ++A+ LF  M  + I P+V  Y  ++HG+           
Sbjct: 432 EPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHD 491

Query: 62  ----------------------CYANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                  YA     +E  ++FI+M  +GL  +VVT+  ++D LC
Sbjct: 492 LLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALC 551

Query: 98  KNRKMDEATRLLDLMIQGGVRPD---------AFCEI--------------------NIV 128
           K  ++D+A    + MI  GV P+           C +                    +IV
Sbjct: 552 KLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIV 611

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  ++  LCK G++  AR L  S+   GL P+V++YN  I   C   +MD+A  L   M
Sbjct: 612 FFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGM 671

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              G+ PN V + TL+  + +         L R M ++ V P     + I++ L ++
Sbjct: 672 VSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRS 728



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 7/234 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I   C+ G ++     F  +       + +  N L+ G C      EA ++
Sbjct: 82  PDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHV 141

Query: 74  FIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M + G +  VV++N ++  LC  R+ +EA  LL +M+ G    D+ C  ++V+Y  
Sbjct: 142 LLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDG---QDSSCSPDVVSYNI 198

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G    G++  A  L       G+ P+VVTYN  I  LC  +++D+A D+F  M  KG
Sbjct: 199 VINGFFNEGQVDKAYSL---FLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKG 255

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           V PN V + T++    +  E      + + M  + V P     + I+D L K +
Sbjct: 256 VKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQ 309


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 135/230 (58%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +  G R++GV   P+ V Y T+I G CK G V  A +LF +M+ + I P++VTY S+IHG
Sbjct: 334 LLRGMRKWGVF--PDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHG 391

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C +    EA  +F EM+ +GL+ D VT+  ++D  CK  +M EA  + + M+Q G+ P 
Sbjct: 392 ICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTP- 450

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V Y  L DGLCK G++  A EL   ++R GL PNV TYN  ++ LC    +++
Sbjct: 451 -----NVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQ 505

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              L  +M++ G  P+ + +TTLM ++ +  E +K  ELLR M  + + P
Sbjct: 506 TVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQP 555



 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 7/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY ++I G+CK G + +A+E+F +M  + + P+ VTY +LI G+C A +  EA  +
Sbjct: 380 PDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSV 439

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ +GL  +VVT+  + D LCKN ++D A  LL  M + G++P      N+  Y  +
Sbjct: 440 HNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQP------NVYTYNTI 493

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCKIG ++   +L + +  AG  P+ +TY   + A C   +M KAH+L   M  K +
Sbjct: 494 VNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRL 553

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKN 245
            P  V F  LM  F           L+  M ++ +MP A+   S++    +KN
Sbjct: 554 QPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKN 606



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TYNTI++GLCK G +++  +L  +M      P+ +TY +L+  +C   +  +A  
Sbjct: 484 QPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHE 543

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+++ LQ  +VTFNV+M+  C +  +++  RL++ M++ G+ P+A        +  
Sbjct: 544 LLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNA------TTFNS 597

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+   C    ++   E+ +++   G+MP+  TYNI I   C    M +A  L  +M  KG
Sbjct: 598 LMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKG 657

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
            +     +  L+  F ++ +  +  +L   M K  ++    I  I VD+
Sbjct: 658 YSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDV 706



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 8/239 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV    NTV+ N ++  LC+ G V +A  L +QM D    P+VV+Y  ++ G+C   +
Sbjct: 235 ELGVCW--NTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGE 292

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++   L  E+  +GL+ D   +N I+  LCKN ++ EA +LL  M + GV PD      
Sbjct: 293 LDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDN----- 347

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  +I G CK+G +  A +L   + R  ++P++VTY   IH +C   +M +A ++F 
Sbjct: 348 -VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFN 406

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +M VKG+ P+ V +T L+  + +  E  +   +   M ++ + P     + + D L KN
Sbjct: 407 EMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKN 465



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 11/226 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE-AEYL 73
           + + ++     L + GFV +A++LF ++    +  +V + N  +       +G + A  +
Sbjct: 170 HPLVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKV 229

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E  + G+  + V+ N+++  LC+  K+ EA  LL  M   G  PD      +V+    
Sbjct: 230 FEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVS---- 285

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
             G C+IG+L    +L   L   GL P+   YN  I  LC + ++ +A  L   M   GV
Sbjct: 286 --GYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGV 343

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            P+ V++TT++  F +    S   +L   M ++ ++P    Y S++
Sbjct: 344 FPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVI 389


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/236 (38%), Positives = 142/236 (60%), Gaps = 9/236 (3%)

Query: 10  VVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +VCK   P+ V+Y+T+I+G CK   ++KA  LF +M  + + PN VTY++L+HG C+   
Sbjct: 339 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGR 398

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A  LF EM+ RG   D V++ +++D LCKNR++DEA  LL  +    + PD      
Sbjct: 399 LQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPD------ 452

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           I  Y  +IDG+C+ G+L+ AR+L  +L+  GL PNV TY I I+ LC    + +A  LF 
Sbjct: 453 IQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFG 512

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +M+ KG +PN   +  +   F+R NET + I+LL+ M  R      S  +++V++L
Sbjct: 513 EMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEML 568



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 135/258 (52%), Gaps = 29/258 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ V Y +IID LCK+  V +A  LF +M  + I+P++ TYNSLIH  C   +     
Sbjct: 204 CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVT 263

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAF 122
            L  EM++  +  +VV F+ ++D LCK  K+ EA  ++D+MI+ GV P         D  
Sbjct: 264 ALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGH 323

Query: 123 C--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C                      ++V+Y  LI+G CKI +++ A  L + + R  L+PN 
Sbjct: 324 CLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNT 383

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTY+  +H LC+  ++  A  LF +M  +G  P+ V +  L+    +     + I LL++
Sbjct: 384 VTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKA 443

Query: 223 MDKRNVMPYASILSIIVD 240
           ++  N+ P   I +I++D
Sbjct: 444 IEGSNMDPDIQIYTIVID 461



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 122/247 (49%), Gaps = 29/247 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T+NT+I GLC EG + +   LF +M  E   PNVVTY +LI+G C     + A  
Sbjct: 135 QPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIR 194

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L   M     Q DVV +  I+D LCK+R++ +A  L   MI  G+ P  F          
Sbjct: 195 LLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALC 254

Query: 123 --CEI-----------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
             CE                  N+V +  ++D LCK GK+  A ++   + + G+ PNVV
Sbjct: 255 NLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVV 314

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  +   C   +MD+A  +F  M  KG AP+ V ++TL+  + +     K + L   M
Sbjct: 315 TYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEM 374

Query: 224 DKRNVMP 230
            ++ ++P
Sbjct: 375 CRKELIP 381



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 132/246 (53%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V ++T++D LCKEG V +A ++   M    + PNVVTYN+L+ G C  ++ +EA  +
Sbjct: 276 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 335

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   DVV+++ +++  CK +++++A  L + M +  + P      N V Y  L
Sbjct: 336 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIP------NTVTYSTL 389

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC +G+L++A  L   +   G +P+ V+Y I +  LC + ++D+A  L   +E   +
Sbjct: 390 MHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNM 449

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+  I+T ++    R  E     +L  ++  + + P     +I+++ L +  +   +  
Sbjct: 450 DPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASK 509

Query: 254 QFNRQK 259
            F   K
Sbjct: 510 LFGEMK 515



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+   +  ++  + K         L  QM    I PN+ T N LI+ 
Sbjct: 53  LSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINS 112

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+      A  +  +++  G Q ++ TFN ++  LC   K+ E   L D MI  G +P 
Sbjct: 113 FCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQP- 171

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V YG LI+GLCK+G    A  L +S+ +    P+VV Y   I +LC D Q+ +
Sbjct: 172 -----NVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 226

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF +M  +G++P+   + +L+ +     E   V  LL  M    +MP   I S +VD
Sbjct: 227 AFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 286

Query: 241 LLVK 244
            L K
Sbjct: 287 ALCK 290



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           N  ++A   F  M+       +  F  ++  + K +       L   M   G+ P     
Sbjct: 47  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPP----- 101

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            NI     LI+  C + +L  A  +   + + G  PN+ T+N  I  LC + ++ +   L
Sbjct: 102 -NIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHL 160

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M  +G  PN V + TL+    +   TS  I LLRSM++ N  P   + + I+D L K
Sbjct: 161 FDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 220

Query: 245 NE 246
           + 
Sbjct: 221 DR 222



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            PN  TY  +I+GLC++G + +A +LF +MK +  +PN  TYN +  GF   N+      
Sbjct: 485 HPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQ 544

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
           L  EM+ RG  +DV T  V++ E+  +  +D++ +
Sbjct: 545 LLQEMLARGFSADVSTSTVLV-EMLSDDGLDQSVK 578


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/236 (38%), Positives = 142/236 (60%), Gaps = 9/236 (3%)

Query: 10  VVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +VCK   P+ V+Y+T+I+G CK   ++KA  LF +M  + + PN VTY++L+HG C+   
Sbjct: 330 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGR 389

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A  LF EM+ RG   D V++ +++D LCKNR++DEA  LL  +    + PD      
Sbjct: 390 LQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPD------ 443

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           I  Y  +IDG+C+ G+L+ AR+L  +L+  GL PNV TY I I+ LC    + +A  LF 
Sbjct: 444 IQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFG 503

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +M+ KG +PN   +  +   F+R NET + I+LL+ M  R      S  +++V++L
Sbjct: 504 EMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEML 559



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 135/258 (52%), Gaps = 29/258 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ V Y +IID LCK+  V +A  LF +M  + I+P++ TYNSLIH  C   +     
Sbjct: 195 CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVT 254

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAF 122
            L  EM++  +  +VV F+ ++D LCK  K+ EA  ++D+MI+ GV P         D  
Sbjct: 255 ALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGH 314

Query: 123 C--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C                      ++V+Y  LI+G CKI +++ A  L + + R  L+PN 
Sbjct: 315 CLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNT 374

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTY+  +H LC+  ++  A  LF +M  +G  P+ V +  L+    +     + I LL++
Sbjct: 375 VTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKA 434

Query: 223 MDKRNVMPYASILSIIVD 240
           ++  N+ P   I +I++D
Sbjct: 435 IEGSNMDPDIQIYTIVID 452



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 122/247 (49%), Gaps = 29/247 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T+NT+I GLC EG + +   LF +M  E   PNVVTY +LI+G C     + A  
Sbjct: 126 QPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIR 185

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L   M     Q DVV +  I+D LCK+R++ +A  L   MI  G+ P  F          
Sbjct: 186 LLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALC 245

Query: 123 --CEI-----------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
             CE                  N+V +  ++D LCK GK+  A ++   + + G+ PNVV
Sbjct: 246 NLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVV 305

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  +   C   +MD+A  +F  M  KG AP+ V ++TL+  + +     K + L   M
Sbjct: 306 TYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEM 365

Query: 224 DKRNVMP 230
            ++ ++P
Sbjct: 366 CRKELIP 372



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 132/246 (53%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V ++T++D LCKEG V +A ++   M    + PNVVTYN+L+ G C  ++ +EA  +
Sbjct: 267 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 326

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   DVV+++ +++  CK +++++A  L + M +  + P      N V Y  L
Sbjct: 327 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIP------NTVTYSTL 380

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC +G+L++A  L   +   G +P+ V+Y I +  LC + ++D+A  L   +E   +
Sbjct: 381 MHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNM 440

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+  I+T ++    R  E     +L  ++  + + P     +I+++ L +  +   +  
Sbjct: 441 DPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASK 500

Query: 254 QFNRQK 259
            F   K
Sbjct: 501 LFGEMK 506



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+   +  ++  + K         L  QM    I PN+ T N LI+ 
Sbjct: 44  LSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINS 103

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+      A  +  +++  G Q ++ TFN ++  LC   K+ E   L D MI  G +P 
Sbjct: 104 FCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQP- 162

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V YG LI+GLCK+G    A  L +S+ +    P+VV Y   I +LC D Q+ +
Sbjct: 163 -----NVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 217

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF +M  +G++P+   + +L+ +     E   V  LL  M    +MP   I S +VD
Sbjct: 218 AFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 277

Query: 241 LLVK 244
            L K
Sbjct: 278 ALCK 281



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           N  ++A   F  M+       +  F  ++  + K +       L   M   G+ P     
Sbjct: 38  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPP----- 92

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            NI     LI+  C + +L  A  +   + + G  PN+ T+N  I  LC + ++ +   L
Sbjct: 93  -NIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHL 151

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M  +G  PN V + TL+    +   TS  I LLRSM++ N  P   + + I+D L K
Sbjct: 152 FDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 211

Query: 245 NE 246
           + 
Sbjct: 212 DR 213



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            PN  TY  +I+GLC++G + +A +LF +MK +  +PN  TYN +  GF   N+      
Sbjct: 476 HPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQ 535

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
           L  EM+ RG  +DV T  V++ E+  +  +D++ +
Sbjct: 536 LLQEMLARGFSADVSTSTVLV-EMLSDDGLDQSVK 569


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 23/263 (8%)

Query: 14  PNTVTYNT-----------------IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS 56
           P+ VTYNT                 IIDGLCK G  D+AKE+F +MK + + PNV++Y+S
Sbjct: 43  PDIVTYNTLIKGLCRVHRISVATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSS 102

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L+HGFC A    E++ LF EM+D+G+Q ++V FNV++D LCK  K+ EA +LL++ IQ G
Sbjct: 103 LVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRG 162

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +  D      +V Y  LIDG CKIG L +AR+L  S+   G   N ++Y I I+  C   
Sbjct: 163 IILD------LVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIW 216

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++++A +L+ +M   G  PN   ++TL+   ++  +     +L   M    +   + I  
Sbjct: 217 KVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYV 276

Query: 237 IIVDLLVKNEISLNSIPQFNRQK 259
           I +D L KN +   ++  FN  K
Sbjct: 277 IFLDGLCKNGVLFEAMELFNELK 299



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 32/242 (13%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTYN++IDG CK G +  A++LFL M  +    N ++Y  LI+G+C      EA  L+ E
Sbjct: 168 VTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNE 227

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------FCE--- 124
           M   G + +V T++ ++  L +  K+ +A +L  +M   G+  D+          C+   
Sbjct: 228 MPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGV 287

Query: 125 -----------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
                            ++  +Y  LIDGLCK GK++ A E  + L++ GL PNVVT NI
Sbjct: 288 LFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNI 347

Query: 168 TIHALCNDEQMDKAHDLFLDMEV---KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
            IH  C  EQ+DKA+ LF  ME     G  P+ + + TL+  F   N+  +V+ LL  M 
Sbjct: 348 MIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMF 407

Query: 225 KR 226
           KR
Sbjct: 408 KR 409



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V +N +ID LCKEG V +AK+L        I  ++VTYNSLI GFC   D + A  
Sbjct: 129 QPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARK 188

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF+ M  +G + + +++ ++++  CK  K++EA  L + M Q G RP      N+  Y  
Sbjct: 189 LFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRP------NVKTYST 242

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GL + GK+ +A +L   +  +G+  +   Y I +  LC +  + +A +LF +++   
Sbjct: 243 LLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYN 302

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              +   ++ L+    +  +     E  + + +  + P     +I++
Sbjct: 303 FKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMI 349



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 33/206 (16%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M    ++P++ T N L +  C  N  +E       ++ RG   D+VT+N ++  LC+  +
Sbjct: 1   MHLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHR 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +  AT +                        +IDGLCK+G    A+E+ + +   G++PN
Sbjct: 61  ISVATCI------------------------IIDGLCKVGHEDEAKEIFEEMKAQGMIPN 96

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V++Y+  +H  C   +++++  LF +M  +GV PN V F  L+    ++ +  +  +LL 
Sbjct: 97  VISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLE 156

Query: 222 SMDKRNVMPYASILSIIVDLLVKNEI 247
              +R          II+DL+  N +
Sbjct: 157 VTIQR---------GIILDLVTYNSL 173


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 125/217 (57%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T+ Y T++DG CK G +  A + F +M   +I P+V+TY ++I GFC   D  EA  L
Sbjct: 772 PDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 831

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ RGL+ D++TF  +M+  CK   + +A R+ + MIQ G      C  N+V Y  L
Sbjct: 832 FHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAG------CSPNVVTYTTL 885

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G L +A EL   + + GL PN+ TYN  ++ LC    +++A  L  + E  G+
Sbjct: 886 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 945

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             + V +TTLM ++ +  E  K  E+L  M  + + P
Sbjct: 946 NADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQP 982



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 6/235 (2%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C PN VTY T+IDGLCKEG +D A EL  +M    + PN+ TYNS+++G C + +  EA 
Sbjct: 875  CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 934

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             L  E    GL +D VT+  +MD  CK+ +MD+A  +L  M+  G++P       IV + 
Sbjct: 935  KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQP------TIVTFN 988

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             L++G C  G L++  +L   +   G+ PN  T+N  +   C    +  A  ++ DM  +
Sbjct: 989  VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSR 1048

Query: 192  GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            GV P+   +  L+          +   L + M  +      S  S+++    K +
Sbjct: 1049 GVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRK 1103



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            +P+ +T+  +++G CK G +  A  +   M     +PNVVTY +LI G C   D + A  
Sbjct: 841  EPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 900

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            L  EM   GLQ ++ T+N I++ LCK+  ++EA +L+      G+  D       V Y  
Sbjct: 901  LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT------VTYTT 954

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            L+D  CK G++  A+E+   +   GL P +VT+N+ ++  C    ++    L   M  KG
Sbjct: 955  LMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1014

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +APN   F  L+  +  +N       + + M  R V P
Sbjct: 1015 IAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEP 1052



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN +I  +C+ G +++A  L L M+ +   P+V++Y+++I+G+C   + ++   L 
Sbjct: 668 NVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLI 727

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M  +GL+ +  T+  I+  LC+  K+ EA      MI  G+ PD       + Y  L+
Sbjct: 728 EKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDT------IVYTTLV 781

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK G ++ A +    +    + P+V+TY   I   C    M +A  LF +M  +G+ 
Sbjct: 782 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLE 841

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+ + FT LM  + +         +   M +    P     + ++D L K
Sbjct: 842 PDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 891



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 97/193 (50%), Gaps = 6/193 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           +F +  +  +  NV +YN +IH  C     NEA +L + M  +G   DV++++ +++  C
Sbjct: 656 VFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYC 715

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +  ++D+  +L++ M Q G++P+++       YG +I  LC+I KL  A E    +   G
Sbjct: 716 RFGELDKVWKLIEKMKQKGLKPNSY------TYGSIIGLLCRICKLAEAEEAFSEMIGQG 769

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           ++P+ + Y   +   C    +  A   F +M  + + P+ + +T ++  F +  +  +  
Sbjct: 770 ILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 829

Query: 218 ELLRSMDKRNVMP 230
           +L   M  R + P
Sbjct: 830 KLFHEMLCRGLEP 842



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 14/197 (7%)

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMD------RGLQSDVVTFNVIMDELCKNRKMDEATRL 108
            SLI  F      N  E  F++  D      +   SD   F+V    L +   + EA ++
Sbjct: 562 QSLISSFWERPKLNVTES-FVQFFDLLVYTYKDWGSDPRVFDVFFQVLVEFGMLPEARKV 620

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCK-IGKLKNARELSQSLTRAGLMPNVVTYNI 167
            + M+  G+       +++ +    +  L K   K   A  + +     G+  NV +YNI
Sbjct: 621 FEKMLNYGLV------LSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNI 674

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            IH +C   ++++AH L L ME+KG  P+ + ++T++  + R  E  KV +L+  M ++ 
Sbjct: 675 VIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKG 734

Query: 228 VMPYASILSIIVDLLVK 244
           + P +     I+ LL +
Sbjct: 735 LKPNSYTYGSIIGLLCR 751



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            PN  T+N ++   C    +  A  ++  M    + P+  TY +L+ G C A +  EA +L
Sbjct: 1017 PNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFL 1076

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            F EM  +G    V T++V++    K +K  EA  + D M + G+  D
Sbjct: 1077 FQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAAD 1123



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            +P+  TY  ++ G C    + +A  LF +MK +  + +V TY+ LI GF       EA  
Sbjct: 1051 EPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEARE 1110

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            +F +M   GL +D   F+   D   K ++ D     +D +I+
Sbjct: 1111 IFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIE 1152


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 131/234 (55%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN V Y+TIID LCK+  + +A E   +M +  I+PNVVTY+S++HGFC     NEA 
Sbjct: 113 CKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEAT 172

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M++R +  D VTFN+++D L K   + EA  + + MI+ GV P      N+  Y 
Sbjct: 173 SLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEP------NVNTYN 226

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C   ++  A++L   + R G  P+V +YNI I   C   ++D+A  L  +M  K
Sbjct: 227 ALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHK 286

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + P+ V ++TLM  F +        +LL  M    ++P     SI++D L K 
Sbjct: 287 ALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQ 340



 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/236 (36%), Positives = 129/236 (54%), Gaps = 6/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  +YN +I G CK G +D+AK L  +M  + + P+ VTY++L+ GFC      +A+
Sbjct: 253 CAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQ 312

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM   GL  D++T+++++D LCK   +DEA  LL  M +  + P      NI  Y 
Sbjct: 313 KLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEP------NIFIYT 366

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G+C  GKL+ AREL  +L   G+ P+VVTY + I  L      ++A +LF DM V 
Sbjct: 367 ILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVH 426

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           G  PN   +  ++  F+R  +TS    L+  M  R     +S   ++ DL  ++EI
Sbjct: 427 GCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSDLESRDEI 482



 Score =  146 bits (369), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 144/267 (53%), Gaps = 29/267 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVT+N ++DGL KEG + +A+ +F  M ++ + PNV TYN+L+ G+C  +  +EA+ L
Sbjct: 185 PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKL 244

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
           F  M+ +G    V ++N+++   CK+ ++DEA  LL  M    + PD          FC+
Sbjct: 245 FNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQ 304

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                +++ Y  ++DGLCK G L  A EL +++  + + PN+  
Sbjct: 305 DGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFI 364

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y I I  +CN  +++ A +LF ++ VKG+ P+ V +T ++   ++   +++  EL R M 
Sbjct: 365 YTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMA 424

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNS 251
               +P +   ++I+   ++N  + N+
Sbjct: 425 VHGCLPNSCTYNVIIQGFLRNGDTSNA 451



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  +PN VT++T+++GL  +  +  A +LF +M      P+V+TY+++I+G C     
Sbjct: 39  FKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGST 98

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  L  +M ++G + +VV ++ I+D LCK++ + EA   L  M+  G+ P      N+
Sbjct: 99  TMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISP------NV 152

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  ++ G C +G+   A  L + +    +MP+ VT+NI +  L  +  + +A  +F  
Sbjct: 153 VTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFET 212

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           M  KGV PN   +  LM  +  +++  +  +L   M ++   P     +I++
Sbjct: 213 MIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILI 264



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 115/212 (54%), Gaps = 8/212 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNE--AEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99
           M   NI P+V T   LI+ FC++N  +   A  +   M   GLQ + VTF+ +++ L   
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
            K+ +A +L D M++ G  PD      ++ Y  +I+GLCK+G    A +L + +   G  
Sbjct: 61  AKIIDAVKLFDEMVKMGYEPD------VITYSTIINGLCKMGSTTMAIQLLKKMEEKGCK 114

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           PNVV Y+  I +LC D+ + +A +   +M  +G++PN V +++++  F     +++   L
Sbjct: 115 PNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSL 174

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
            + M +RNVMP     +I+VD L K  + L +
Sbjct: 175 FKQMVERNVMPDTVTFNILVDGLSKEGMILEA 206


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TV Y T+IDG CK G +  A + F +M   +I P+V+TY ++I GFC   D  EA  L
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  +GL+ D VTF  +++  CK   M +A R+ + MIQ G  P      N+V Y  L
Sbjct: 409 FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSP------NVVTYTTL 462

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G L +A EL   + + GL PN+ TYN  ++ LC    +++A  L  + E  G+
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             + V +TTLM ++ +  E  K  E+L+ M  + + P
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 559



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 6/248 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T+IDGLCKEG +D A EL  +M    + PN+ TYNS+++G C + +  EA 
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  E    GL +D VT+  +MD  CK+ +MD+A  +L  M+  G++P       IV + 
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP------TIVTFN 565

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++G C  G L++  +L   +   G+ PN  T+N  +   C    +  A  ++ DM  +
Sbjct: 566 VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           GV P+   +  L+    +     +   L + M  +      S  S+++   +K +  L +
Sbjct: 626 GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 685

Query: 252 IPQFNRQK 259
              F++ +
Sbjct: 686 REVFDQMR 693



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++VT+  +I+G CK G +  A  +   M     +PNVVTY +LI G C   D + A  
Sbjct: 418 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 477

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   GLQ ++ T+N I++ LCK+  ++EA +L+      G+  D       V Y  
Sbjct: 478 LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT------VTYTT 531

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D  CK G++  A+E+ + +   GL P +VT+N+ ++  C    ++    L   M  KG
Sbjct: 532 LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 591

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +APN   F +L+  +  +N       + + M  R V P
Sbjct: 592 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGP 629



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN +I  +C+ G + +A  L L M+ +   P+V++Y+++++G+C   + ++   L 
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  +GL+ +   +  I+  LC+  K+ EA      MI+ G+ PD       V Y  LI
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT------VVYTTLI 358

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK G ++ A +    +    + P+V+TY   I   C    M +A  LF +M  KG+ 
Sbjct: 359 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLE 418

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+ V FT L+  + +         +   M +    P     + ++D L K
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 468



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 98/193 (50%), Gaps = 6/193 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           +F +  +  +  NV +YN +IH  C      EA +L + M  +G   DV++++ +++  C
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +  ++D+  +L+++M + G++P+++       YG +I  LC+I KL  A E    + R G
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSY------IYGSIIGLLCRICKLAEAEEAFSEMIRQG 346

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           ++P+ V Y   I   C    +  A   F +M  + + P+ + +T ++  F +  +  +  
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 406

Query: 218 ELLRSMDKRNVMP 230
           +L   M  + + P
Sbjct: 407 KLFHEMFCKGLEP 419



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N+++   C    +  A  ++  M    + P+  TY +L+ G C A +  EA +L
Sbjct: 594 PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFL 653

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           F EM  +G    V T++V++    K +K  EA  + D M + G+  D
Sbjct: 654 FQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK-IGK 142
           SD   F+V    L     + EA R+ + M+  G+       +++ +    +  L K   K
Sbjct: 173 SDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGL------VLSVDSCNVYLTRLSKDCYK 226

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
              A  + +     G+  NV +YNI IH +C   ++ +AH L L ME+KG  P+ + ++T
Sbjct: 227 TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYST 286

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++  + R  E  KV +L+  M ++ + P + I   I+ LL +
Sbjct: 287 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR 328



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  ++ G CK   + +A  LF +MK +  + +V TY+ LI GF       EA  +
Sbjct: 629 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 688

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           F +M   GL +D   F+   D   K ++ D     +D +I+
Sbjct: 689 FDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIE 729


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 6/217 (2%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+TV Y T+IDG CK G +  A + F +M   +I P+V+TY ++I GFC   D  EA  L
Sbjct: 792  PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 851

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            F EM  +GL+ D VTF  +++  CK   M +A R+ + MIQ G      C  N+V Y  L
Sbjct: 852  FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG------CSPNVVTYTTL 905

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            IDGLCK G L +A EL   + + GL PN+ TYN  ++ LC    +++A  L  + E  G+
Sbjct: 906  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 965

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              + V +TTLM ++ +  E  K  E+L+ M  + + P
Sbjct: 966  NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 1002



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 6/248 (2%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C PN VTY T+IDGLCKEG +D A EL  +M    + PN+ TYNS+++G C + +  EA 
Sbjct: 895  CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 954

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             L  E    GL +D VT+  +MD  CK+ +MD+A  +L  M+  G++P       IV + 
Sbjct: 955  KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP------TIVTFN 1008

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             L++G C  G L++  +L   +   G+ PN  T+N  +   C    +  A  ++ DM  +
Sbjct: 1009 VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 1068

Query: 192  GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
            GV P+   +  L+    +     +   L + M  +      S  S+++   +K +  L +
Sbjct: 1069 GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 1128

Query: 252  IPQFNRQK 259
               F++ +
Sbjct: 1129 REVFDQMR 1136



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            +P++VT+  +I+G CK G +  A  +   M     +PNVVTY +LI G C   D + A  
Sbjct: 861  EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 920

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            L  EM   GLQ ++ T+N I++ LCK+  ++EA +L+      G+  D       V Y  
Sbjct: 921  LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT------VTYTT 974

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            L+D  CK G++  A+E+ + +   GL P +VT+N+ ++  C    ++    L   M  KG
Sbjct: 975  LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1034

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +APN   F +L+  +  +N       + + M  R V P
Sbjct: 1035 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGP 1072



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN +I  +C+ G + +A  L L M+ +   P+V++Y+++++G+C   + ++   L 
Sbjct: 688 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 747

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  +GL+ +   +  I+  LC+  K+ EA      MI+ G+ PD       V Y  LI
Sbjct: 748 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT------VVYTTLI 801

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK G ++ A +    +    + P+V+TY   I   C    M +A  LF +M  KG+ 
Sbjct: 802 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLE 861

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+ V FT L+  + +         +   M +    P     + ++D L K
Sbjct: 862 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 911



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 98/193 (50%), Gaps = 6/193 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           +F +  +  +  NV +YN +IH  C      EA +L + M  +G   DV++++ +++  C
Sbjct: 676 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 735

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +  ++D+  +L+++M + G++P+++       YG +I  LC+I KL  A E    + R G
Sbjct: 736 RFGELDKVWKLIEVMKRKGLKPNSYI------YGSIIGLLCRICKLAEAEEAFSEMIRQG 789

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           ++P+ V Y   I   C    +  A   F +M  + + P+ + +T ++  F +  +  +  
Sbjct: 790 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAG 849

Query: 218 ELLRSMDKRNVMP 230
           +L   M  + + P
Sbjct: 850 KLFHEMFCKGLEP 862



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            PN  T+N+++   C    +  A  ++  M    + P+  TY +L+ G C A +  EA +L
Sbjct: 1037 PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFL 1096

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            F EM  +G    V T++V++    K +K  EA  + D M + G+  D
Sbjct: 1097 FQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 1143



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 13/178 (7%)

Query: 74  FIEMMD------RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           F++  D      +   SD   F+V    L     + EA R+ + M+  G+       +++
Sbjct: 600 FVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGL------VLSV 653

Query: 128 VAYGCLIDGLCK-IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            +    +  L K   K   A  + +     G+  NV +YNI IH +C   ++ +AH L L
Sbjct: 654 DSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLL 713

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ME+KG  P+ + ++T++  + R  E  KV +L+  M ++ + P + I   I+ LL +
Sbjct: 714 LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR 771



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+  TY  ++ G CK   + +A  LF +MK +  + +V TY+ LI GF       EA  +
Sbjct: 1072 PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 1131

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            F +M   GL +D   F+   D   K ++ D     +D +I+
Sbjct: 1132 FDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIE 1172


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTY T+I  LCK G V+ A   F QM DE ++P  + YNSLIH  C  +  ++A+ L
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+DRG+  D + FN I+D  CK  ++ E+ +L DLM++ GV+PD      I+ Y  L
Sbjct: 467 ILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD------IITYSTL 520

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L  S+   G+ P+ VTYN  I+  C   +M+ A  LF +ME  GV
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +P+ + +  ++    +   T+   EL   + +       S  +II+  L KN ++  ++ 
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALR 640

Query: 254 QFN 256
            F 
Sbjct: 641 MFQ 643



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY++II  LCK   +DKA E+   M    + PN  TYNS++HG+C +    EA   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++P+      I  YG L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE------ITTYGTL 345

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ PN   ++I I A     ++D+A  +F  M  +G+
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V + T++    +       +     M    + P
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y T+I+G  KEG +DKA   + +M D  I PNVVTY+S+I   C A   ++A 
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G+  +  T+N I+   C + +  EA   L  M   GV PD      +V Y 
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD------VVTYN 308

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK G+   AR++  S+T+ GL P + TY   +        + + H L LD+ V+
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMVR 367

Query: 192 -GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P       ++ +L K+
Sbjct: 368 NGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNE 69
           C PN  +YN ++ GLC E    +A EL   M D+  +  P+VV+Y ++I+GF    D ++
Sbjct: 158 CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   + EM+DRG+  +VVT++ I+  LCK + MD+A  +L  M++ GV P      N   
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP------NCRT 271

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++ G C  G+ K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M 
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMT 331

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +G+ P    + TL+  +  K    ++  LL  M +  + P   + SI++
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY+T+IDG C  G +D+A +L   M    + P+ VTYN+LI+G+C  +   +A  
Sbjct: 511 KPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       ++ +  Y  
Sbjct: 571 LFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT------QLELSTYNI 624

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK      A  + Q+L    L     T+NI I AL    + D+A DLF  +   G
Sbjct: 625 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANG 684

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+   ++ +  + I +    ++ +L  SM++      + +L SI+  LL + +I+
Sbjct: 685 LVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDIT 741



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 125/230 (54%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+I+G CK   ++ A  LF +M+   ++P+++TYN ++ G         A+ 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ + + G Q ++ T+N+I+  LCKN   DEA R    M Q     D   ++    +  
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALR----MFQNLCLTD--LQLETRTFNI 659

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K+G+   A++L  +L+  GL+P+V TY++    L     +++  DLFL ME  G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              N  +  +++   +++ + ++    L  +D+++    AS  S+ +DLL
Sbjct: 720 CTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLL 769



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 5/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +I   C  G +D        +  +    + + +  L+ G C     ++A  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M + G   +V ++N+++  LC   +  EA  LL +M   G      C  ++V+Y  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG----GDCPPDVVSYTT 204

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G  K G L  A      +   G++PNVVTY+  I ALC  + MDKA ++   M   G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PNC  + +++  +    +  + I  L+ M    V P     + ++D L KN
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 140/231 (60%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN ++YNT+I+G CK   +DKA  LF +M  + + P+ VTY++LIHG C+     +A 
Sbjct: 270 CMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAI 329

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+      ++VT+ +++D LCKNR + EA  LL  +    + PD   ++N +A  
Sbjct: 330 ALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDI--QVNNIA-- 385

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             IDG+C+ G+L+ AR+L  +L+  GL P+V TY+I I+ LC    +D+A  LF +M+  
Sbjct: 386 --IDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDEN 443

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G   N  I+ T+   F+R NETS+ I+LL+ M  R     AS +++ V +L
Sbjct: 444 GCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKML 494



 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 130/230 (56%), Gaps = 7/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN   YNTIID LCK+  V +A  LF +M  + I+P++ TYNSLIH  C   +     
Sbjct: 164 CQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVA 223

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAY 130
            L  EM+D  +  DVV+FN ++D LCK  K+ EA  ++D MIQ GG  P      N+++Y
Sbjct: 224 TLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMP------NVISY 277

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI+G CKI ++  A  L   + R  L+P+ VTY+  IH LC+ E++  A  LF +M  
Sbjct: 278 NTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVA 337

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
               PN V +  L+    +    ++ + LL++++  N+ P   + +I +D
Sbjct: 338 CSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAID 387



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 123/242 (50%), Gaps = 13/242 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+TV +N ++  + K         L  QM    I PN+ T + LI+ 
Sbjct: 46  ISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINS 105

Query: 61  FCYANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
           FC+ N G   EA +LF +M+  G + DVVT+  +++ LCK      A RLL  M+Q   +
Sbjct: 106 FCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQ 165

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           P+ F      AY  +ID LCK  ++  A  L   +   G+ P++ TYN  IHALCN  + 
Sbjct: 166 PNVF------AYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEW 219

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-----NVMPYAS 233
                L  +M    + P+ V F T++ +  ++ + ++  +++  M +R     NV+ Y +
Sbjct: 220 KHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNT 279

Query: 234 IL 235
           ++
Sbjct: 280 LI 281


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTY T+I  LCK G V+ A   F QM DE ++P  + YNSLIH  C  +  ++A+ L
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+DRG+  D + FN I+D  CK  ++ E+ +L DLM++ GV+PD      I+ Y  L
Sbjct: 467 ILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD------IITYSTL 520

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L  S+   G+ P+ VTYN  I+  C   +M+ A  LF +ME  GV
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +P+ + +  ++    +   T+   EL   + +       S  +II+  L KN ++  ++ 
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALR 640

Query: 254 QFN 256
            F 
Sbjct: 641 MFQ 643



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY++II  LCK   +DKA E+   M    + PN  TYNS++HG+C +    EA   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++P+      I  YG L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE------ITTYGTL 345

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ PN   ++I I A     ++D+A  +F  M  +G+
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V + T++    +       +     M    + P
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ V+Y T+I+G  KEG +DKA   + +M D  I PNVVTY+S+I   C A   +
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMD 251

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +   M+  G+  +  T+N I+   C + +  EA   L  M   GV PD      +V
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD------VV 305

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+D LCK G+   AR++  S+T+ GL P + TY   +        + + H L LD+
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL-LDL 364

Query: 189 EVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V+ G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P       ++ +L K+
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNE 69
           C PN  +YN ++ GLC +    +A EL   M D+  +  P+VV+Y ++I+GF    D ++
Sbjct: 158 CIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   + EM+DRG+  +VVT++ I+  LCK + MD+A  +L  M++ GV P      N   
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP------NCRT 271

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++ G C  G+ K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M 
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMT 331

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +G+ P    + TL+  +  K    ++  LL  M +  + P   + SI++
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY+T+IDG C  G +D+A +L   M    + P+ VTYN+LI+G+C  +   +A  
Sbjct: 511 KPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       ++ +  Y  
Sbjct: 571 LFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT------QLELSTYNI 624

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK      A  + Q+L    L     T+NI I AL    + D+A DLF  +   G
Sbjct: 625 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANG 684

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+   ++ +  + I +    ++ +L  SM++      + +L SI+  LL + +I+
Sbjct: 685 LVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDIT 741



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 125/230 (54%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+I+G CK   ++ A  LF +M+   ++P+++TYN ++ G         A+ 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ + + G Q ++ T+N+I+  LCKN   DEA R    M Q     D   ++    +  
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALR----MFQNLCLTDL--QLETRTFNI 659

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K+G+   A++L  +L+  GL+P+V TY++    L     +++  DLFL ME  G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              N  +  +++   +++ + ++    L  +D+++    AS  S+ +DLL
Sbjct: 720 CTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLL 769



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 5/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  ++   C  G +D        +  +    + + +  ++ G C     ++A  +
Sbjct: 89  PNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDI 148

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M + G   +V ++N+++  LC + +  EA  LL +M   G      C  ++V+Y  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDG----GDCPPDVVSYTT 204

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G  K G L  A      +   G++PNVVTY+  I ALC  + MDKA ++   M   G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PNC  + +++  +    +  + I  L+ M    V P     + ++D L KN
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTY T+I  LCK G V+ A   F QM DE ++P  + YNSLIH  C  +  ++A+ L
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+DRG+  D + FN I+D  CK  ++ E+ +L DLM++ GV+PD      I+ Y  L
Sbjct: 467 ILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD------IITYSTL 520

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L  S+   G+ P+ VTYN  I+  C   +M+ A  LF +ME  GV
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +P+ + +  ++    +   T+   EL   + +       S  +II+  L KN ++  ++ 
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALR 640

Query: 254 QFN 256
            F 
Sbjct: 641 MFQ 643



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY++II  LCK   +DKA E+   M    + PN  TYNS++HG+C +    EA   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++P+      I  YG L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE------ITTYGTL 345

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ PN   ++I I A     ++D+A  +F  M  +G+
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V + T++    +       +     M    + P
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 6/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ V+Y T+I+G  KEG +DKA   + +M D  I PNVVTY+S+I   C A   +
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMD 251

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +   M+  G+  +  T+N I+   C + +  EA   L  M   GV PD      +V
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD------VV 305

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+D LCK G+   AR++  S+T+ GL P + TY   +        + + H L   M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P       ++ +L K+
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNE 69
           C PN  +YN ++ GLC E    +A EL   M D+  +  P+VV+Y ++I+GF    D ++
Sbjct: 158 CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   + EM+DRG+  +VVT++ I+  LCK + MD+A  +L  M++ GV P      N   
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP------NCRT 271

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++ G C  G+ K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M 
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMT 331

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +G+ P    + TL+  +  K    ++  LL  M +  + P   + SI++
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY+T+IDG C  G +D+A +L   M    + P+ VTYN+LI+G+C  +   +A  
Sbjct: 511 KPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       ++ +  Y  
Sbjct: 571 LFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT------QLELSTYNI 624

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK      A  + Q+L    L     T+NI I AL    + D+A DLF  +   G
Sbjct: 625 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANG 684

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+   ++ +  + I +    ++ +L  SM++      + +L SI+  LL + +I+
Sbjct: 685 LVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDIT 741



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 125/230 (54%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+I+G CK   ++ A  LF +M+   ++P+++TYN ++ G         A+ 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ + + G Q ++ T+N+I+  LCKN   DEA R    M Q     D   ++    +  
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALR----MFQNLCLTD--LQLETRTFNI 659

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K+G+   A++L  +L+  GL+P+V TY++    L     +++  DLFL ME  G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              N  +  +++   +++ + ++    L  +D+++    AS  S+ +DLL
Sbjct: 720 CTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLL 769



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 5/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +I   C  G +D        +  +    + + +  L+ G C     ++A  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M + G   +V ++N+++  LC   +  EA  LL +M   G      C  ++V+Y  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG----GDCPPDVVSYTT 204

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G  K G L  A      +   G++PNVVTY+  I ALC  + MDKA ++   M   G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PNC  + +++  +    +  + I  L+ M    V P     + ++D L KN
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTY T+I  LCK G V+ A   F QM DE ++P  + YNSLIH  C  +  ++A+ L
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+DRG+  D + FN I+D  CK  ++ E+ +L DLM++ GV+P      NI+ Y  L
Sbjct: 467 ILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP------NIITYSTL 520

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L  S+   G+ P+ VTYN  I+  C   +M+ A  LF +ME  GV
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +P+ + +  ++    +   T+   EL   + +       S  +II+  L KN ++  ++ 
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALR 640

Query: 254 QFN 256
            F 
Sbjct: 641 MFQ 643



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN+II  LCK   +DKA E+   M    + PN  TYNS++HG+C +    EA   
Sbjct: 232 PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++P+      I  YG L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE------ITTYGTL 345

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ PN   ++I I A     ++D+A  +F  M  +G+
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V + T++    +       +     M    + P
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ V+Y T+I+G  KEG +DKA   + +M D  I PNVVTYNS+I   C A   +
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMD 251

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +   M+  G+  +  T+N I+   C + +  EA   L  M   GV PD      +V
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD------VV 305

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+D LCK G+   AR++  S+T+ GL P + TY   +        + + H L LD+
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL-LDL 364

Query: 189 EVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V+ G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P       ++ +L K+
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNE 69
           C PN  +YN ++ GLC E    +A EL   M D+  +  P+VV+Y ++I+GF    D ++
Sbjct: 158 CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   + EM+DRG+  +VVT+N I+  LCK + MD+A  +L  M++ GV P      N   
Sbjct: 218 AYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMP------NCRT 271

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++ G C  G+ K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M 
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMT 331

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +G+ P    + TL+  +  K    ++  LL  M +  + P   + SI++
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TY+T+IDG C  G +D+A +L   M    + P+ VTYN+LI+G+C  +   +A  
Sbjct: 511 KPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       ++ +  Y  
Sbjct: 571 LFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT------QLELSTYNI 624

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK      A  + Q+L    L     T+NI I AL    + D+A DLF  +   G
Sbjct: 625 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANG 684

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+   ++ +  + I +    ++ +L  SM++      + +L SI+  LL + +I+
Sbjct: 685 LVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDIT 741



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 125/230 (54%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+I+G CK   ++ A  LF +M+   ++P+++TYN ++ G         A+ 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ + + G Q ++ T+N+I+  LCKN   DEA R    M Q     D   ++    +  
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALR----MFQNLCLTDL--QLETRTFNI 659

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K+G+   A++L  +L+  GL+P+V TY++    L     +++  DLFL ME  G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              N  +  +++   +++ + ++    L  +D+++    AS  S+ +DLL
Sbjct: 720 CTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLL 769



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 5/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +I   C  G +D        +  +    + + +  L+ G C     ++A  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M + G   +V ++N+++  LC   +  EA  LL +M   G      C  ++V+Y  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG----GDCPPDVVSYTT 204

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G  K G L  A      +   G++PNVVTYN  I ALC  + MDKA ++   M   G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PNC  + +++  +    +  + I  L+ M    V P     + ++D L KN
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTY T+I  LCK G V+ A   F QM DE ++P  + YNSLIH  C  +  ++A+ L
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL 466

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+DRG+  D + FN I+D  CK  ++ E+ +L DLM++ GV+PD      I+ Y  L
Sbjct: 467 ILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD------IITYSTL 520

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L  S+   G+ P+ VTYN  I+  C   +M+ A  LF +ME  GV
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +P+ + +  ++    +   T+   EL   + +       S  +II+  L KN ++  ++ 
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALR 640

Query: 254 QFN 256
            F 
Sbjct: 641 MFQ 643



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY++II  LCK   +DKA E+   M    + PN  TYNS++HG+C +    EA   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++P+      I  YG L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE------ITTYGTL 345

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ PN   ++I I A     ++D+A  +F  M  +G+
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V + T++    +       +     M    + P
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 8/238 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ V+Y T+I+G  KEG +DKA   + +M D  I PNVVTY+S+I   C A   +
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMD 251

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +   M+  G+  +  T+N I+   C + +  EA   L  M   GV PD      +V
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD------VV 305

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+D LCK G+   AR++  S+T+ GL P + TY   +        + + H L LD+
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL-LDL 364

Query: 189 EVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V+ G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P       ++ +L K+
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNE 69
           C PN  +YN ++ GLC E    +A EL   M D+  +  P+VV+Y ++I+GF    D ++
Sbjct: 158 CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   + EM+DRG+  +VVT++ I+  LCK + MD+A  +L  M++ GV P      N   
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP------NCRT 271

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++ G C  G+ K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M 
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMT 331

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +G+ P    + TL+  +  K    ++  LL  M +  + P   + SI++
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY+T+IDG C  G +D+A +L   M    + P+ VTYN+LI+G+C  +   +A  
Sbjct: 511 KPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       ++ +  Y  
Sbjct: 571 LFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT------QLELSTYNI 624

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK      A  + Q+L    L     T+NI I AL    + D+A DLF  +   G
Sbjct: 625 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANG 684

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+   ++ +  + I +    ++ +L  SM++      + +L SI+  LL + +I+
Sbjct: 685 LVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDIT 741



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 125/230 (54%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+I+G CK   ++ A  LF +M+   ++P+++TYN ++ G         A+ 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ + + G Q ++ T+N+I+  LCKN   DEA R    M Q     D   ++    +  
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNLTDEALR----MFQNLCLTDL--QLETRTFNI 659

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K+G+   A++L  +L+  GL+P+V TY++    L     +++  DLFL ME  G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              N  +  +++   +++ + ++    L  +D+++    AS  S+ +DLL
Sbjct: 720 CTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLL 769



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 5/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +I   C  G +D        +  +    + + +  L+ G C     ++A  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M + G   +V ++N+++  LC   +  EA  LL +M   G      C  ++V+Y  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG----GDCPPDVVSYTT 204

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G  K G L  A      +   G++PNVVTY+  I ALC  + MDKA ++   M   G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PNC  + +++  +    +  + I  L+ M    V P     + ++D L KN
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 135/232 (58%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YNTIIDGLCK+  V +A ++F ++K + + P+V TY+ L+HG C ++   EA  
Sbjct: 221 RPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASA 280

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EMM   +  DVVTFN+++D+LCK   + EA  ++ +MI+ GV P      N   Y  
Sbjct: 281 LFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEP------NYATYNS 334

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G C   K+  AR +  ++   G MPNVV+YNI I+  C  +++D+A +LF +M  +G
Sbjct: 335 LMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRG 394

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN   + TL+    +     +  EL + M  +   P     +I++D L K
Sbjct: 395 LIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCK 446



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 113/199 (56%), Gaps = 6/199 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N ++D LCKEG + +A+ +   M ++ + PN  TYNSL++G+C  N   EA  +
Sbjct: 292 PDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMV 351

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   +VV++N++++  CK +++DEA  L D M   G+ P+ F       Y  L
Sbjct: 352 FDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTF------NYNTL 405

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+   AREL + +   G  P++VT  I + +LC    +D A  LF  M+   +
Sbjct: 406 ISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCL 465

Query: 194 APNCVIFTTLMPSFIRKNE 212
            PN V +  L+ +  +  +
Sbjct: 466 KPNLVTYDILIRAMYKSGK 484



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT++++I+GLC E    +A E F +M      PN+ TYN++I GFC       A  
Sbjct: 151 EPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVG 210

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M   G + D+V +N I+D LCK+R + EA  +   +   GVRPD F       Y  
Sbjct: 211 LLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVF------TYSI 264

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLC   + + A  L   +    +MP+VVT+NI +  LC +  + +A  +   M  KG
Sbjct: 265 LMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKG 324

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           V PN   + +LM  +  +N+  +   +  +M  +  MP     +I+++   K +
Sbjct: 325 VEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQ 378



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V ++ ++  L +         L  +++   I  +V  +N LI+ F      + A  +
Sbjct: 82  PCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSV 141

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  G + D VTF+ +++ LC   K   A    D M+  G +P      N+  Y  +
Sbjct: 142 LGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQP------NLHTYNTI 195

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CKIGK   A  L + + +AG  P++V YN  I  LC D  + +A D+F +++ KGV
Sbjct: 196 IKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGV 255

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   ++ LM      ++  +   L   M   N+MP     +I+VD L K
Sbjct: 256 RPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCK 306



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 6/132 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V+YN +I+G CK   +D+A+ELF +M    + PN   YN+LI G C A    EA 
Sbjct: 360 CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAR 419

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M  +G   D+VT  +++D LCK   +D A RL   M    ++P      N+V Y 
Sbjct: 420 ELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKP------NLVTYD 473

Query: 132 CLIDGLCKIGKL 143
            LI  + K GK+
Sbjct: 474 ILIRAMYKSGKI 485



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 69/136 (50%)

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
           E ++  +  LI+   ++ ++  A  +   + + G  P+ VT++  I+ LC +++  +A +
Sbjct: 116 ERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAME 175

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
            F +M   G  PN   + T++  F +  +T+  + LL+ MDK    P   I + I+D L 
Sbjct: 176 FFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLC 235

Query: 244 KNEISLNSIPQFNRQK 259
           K+ +   ++  F+  K
Sbjct: 236 KDRLVSEALDIFSEIK 251


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/247 (37%), Positives = 147/247 (59%), Gaps = 7/247 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN ++YNT+I+G CK   +DKA  LF +M  + + P+ VTY++LIHG C+     +A 
Sbjct: 337 CMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAI 396

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+      ++VT+ +++D LCKNR + EA  LL  +    + PD   ++N +A  
Sbjct: 397 ALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDI--QVNNIA-- 452

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             IDG+C+ G+L+ AR+L  +L+  GL P+V TY+I I+ LC    +D+A  LF +M+  
Sbjct: 453 --IDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDEN 510

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G   N  I+ T+   F+R NETS+ I+LL+ M  R     AS +++ V +L  + +   S
Sbjct: 511 GCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLD-QS 569

Query: 252 IPQFNRQ 258
           + Q  R+
Sbjct: 570 LKQILRE 576



 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 129/235 (54%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN   YNTIID LCK+  V +A  LF +M  + I+P++ TYNSLIH  C   +     
Sbjct: 197 CQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVA 256

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+D  +  DVV+FN ++D LCK  K+ EA  ++D MIQ GV P      N+V Y 
Sbjct: 257 TLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEP------NVVTYT 310

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C + ++  A ++  ++   G MPNV++YN  I+  C  +++DKA  LF +M  +
Sbjct: 311 ALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQ 370

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            + P+ V ++TL+            I L   M   + +P      I++D L KN 
Sbjct: 371 ELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNR 425



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 120/218 (55%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+ T+I G+  EG + +A  LF +M  E   P+VVTY +LI+G C   + + A  
Sbjct: 128 QPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIR 187

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ +  Q +V  +N I+D LCK+R++ EA  L   M+  G+ PD F       Y  
Sbjct: 188 LLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIF------TYNS 241

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC + + K+   L   +  + +MP+VV++N  + ALC + ++ +AHD+   M  +G
Sbjct: 242 LIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRG 301

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V PN V +T LM      +E  + +++  +M  +  MP
Sbjct: 302 VEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMP 339



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+TV +N ++  + K         L  QM    I PN+ T + LI+ 
Sbjct: 46  ISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINS 105

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+ N    A  +  +++  G Q D  TF  ++  +    K+ EA  L D MI  G RPD
Sbjct: 106 FCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPD 165

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +V YG LI+GLCK+G    A  L  S+ +    PNV  YN  I +LC D Q+ +
Sbjct: 166 ------VVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTE 219

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF +M  KG++P+   + +L+ +     E   V  LL  M    +MP     + +VD
Sbjct: 220 AFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD 279

Query: 241 LLVK 244
            L K
Sbjct: 280 ALCK 283


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 140/231 (60%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN ++YNT+I+G CK   +DKA  LF +M  + + P+ VTY++LIHG C+     +A 
Sbjct: 391 CMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAI 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+      ++VT+ +++D LCKNR + EA  LL  +    + PD   ++N +A  
Sbjct: 451 ALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDI--QVNNIA-- 506

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             IDG+C+ G+L+ AR+L  +L+  GL P+V TY+I I+ LC    +D+A  LF +M+  
Sbjct: 507 --IDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDEN 564

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G   N  I+ T+   F+R NETS+ I+LL+ M  R     AS +++ V +L
Sbjct: 565 GCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKML 615



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 136/264 (51%), Gaps = 25/264 (9%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN   YNTIID LCK+  V +A  LF +M  + I+P++ TYNSLIH  C   +     
Sbjct: 197 CQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVA 256

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+D  +  DVV+FN ++D LCK  K+ EA  ++D MIQ GV P      N+V Y 
Sbjct: 257 TLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEP------NVVTYT 310

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA-H-------- 182
            L+DG C + ++  A ++  ++   G MPNV++YN  I+  C  +++DKA H        
Sbjct: 311 ALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXX 370

Query: 183 ----------DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
                      +F  M  KG  PN + + TL+  + +     K + L   M ++ ++P  
Sbjct: 371 CCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDT 430

Query: 233 SILSIIVDLLVKNEISLNSIPQFN 256
              S ++  L   E   ++I  F+
Sbjct: 431 VTYSTLIHGLCHVERLQDAIALFH 454



 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+ T+I G+C EG + +A  LF +M  E   P+VVTY +LI+G C   + + A  
Sbjct: 128 QPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIR 187

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ +  Q +V  +N I+D LCK+R++ EA  L   M+  G+ PD F       Y  
Sbjct: 188 LLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIF------TYNS 241

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC + + K+   L   +  + +MP+VV++N  + ALC + ++ +AHD+   M  +G
Sbjct: 242 LIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRG 301

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V PN V +T LM      +E  + +++  +M  +  MP
Sbjct: 302 VEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMP 339



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+TV +N ++  + K         L  QM    I PN+ T + LI+ 
Sbjct: 46  ISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINS 105

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+ N    A  +  +++  G Q D  TF  ++  +C   K+ EA  L D MI  G RPD
Sbjct: 106 FCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPD 165

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +V YG LI+GLCK+G    A  L  S+ +    PNV  YN  I +LC D Q+ +
Sbjct: 166 ------VVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTE 219

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF +M  KG++P+   + +L+ +     E   V  LL  M    +MP     + +VD
Sbjct: 220 AFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD 279

Query: 241 LLVK 244
            L K
Sbjct: 280 ALCK 283


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 89/243 (36%), Positives = 134/243 (55%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +I  LCK G V+ A   F QM DE ++P  + YNSLIHG C  N    AE L
Sbjct: 296 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 355

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+DRG+  + + FN I+D  CK  ++ E+ +L DLM++ GV+PD      I+ Y  L
Sbjct: 356 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD------IITYSTL 409

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L  S+   G+ P+ VTY+  I+  C   +M  A  LF +ME  GV
Sbjct: 410 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGV 469

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +P+ + +  ++    +   T+   EL   + K       S  +II+  L KN+++ +++ 
Sbjct: 470 SPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALR 529

Query: 254 QFN 256
            F 
Sbjct: 530 MFQ 532



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y+T+I+G  KEG +DK    + +M D+ I+PNVVTYNS+I   C A   ++A 
Sbjct: 84  CPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAM 143

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G+  D +T+N I+   C + +  EA   L  M   GV PD      +V Y 
Sbjct: 144 EVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPD------VVTYN 197

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK G+   AR++  S+T+ GL P + TY   +        + + H L LD+ V+
Sbjct: 198 SLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMVR 256

Query: 192 -GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P A     ++ +L K+
Sbjct: 257 NGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 311



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN+II  LCK   VDKA E+   M    + P+ +TYNS++HGFC +    EA   
Sbjct: 121 PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 180

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++P+      I  YG L
Sbjct: 181 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPE------ITTYGTL 234

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ PN   ++I + A    E++++A  +F  M  +G+
Sbjct: 235 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGL 294

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V +  ++    +       +     M    + P
Sbjct: 295 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 331



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 130/248 (52%), Gaps = 8/248 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNEAE 71
           P+  +YN +++GLC E    +A EL   M D+  +  P+VV+Y+++I+GF    D ++  
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             + EM+D+ +  +VVT+N I+  LCK + +D+A  +L  M++ GV PD       + Y 
Sbjct: 109 STYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDC------MTYN 162

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ G C  G+ K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M  +
Sbjct: 163 SIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 222

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ P    + TL+  +  K    ++  LL  M +  + P   + SI+V    K E    +
Sbjct: 223 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 282

Query: 252 IPQFNRQK 259
           +  F++ +
Sbjct: 283 MLVFSKMR 290



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY+T+IDG C  G +D+A +L   M    + P+ VTY++LI+G+C  +   +A  
Sbjct: 400 KPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALV 459

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       ++ +  Y  
Sbjct: 460 LFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGR------QLELSTYNI 513

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK     +A  + Q+L    L     T+NI I AL    + D+A DLF+     G
Sbjct: 514 ILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 573

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
           + PN   +  +  + I +    ++ +L  SM+       + +L+ IV +LL + EI+
Sbjct: 574 LVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 630



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY+T+I+G CK   +  A  LF +M+   ++P+++TYN ++ G         A+ 
Sbjct: 435 KPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 494

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ +   G Q ++ T+N+I+  LCKN+  D+A R+   +    ++ +A        +  
Sbjct: 495 LYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEA------RTFNI 548

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID L K+G+   A++L  + +  GL+PN  TY +    +     +++   LFL ME  G
Sbjct: 549 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 608

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              +  +   ++   +++ E ++    L  +D+++    AS  S+ +DLL
Sbjct: 609 CTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 658



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 7/101 (6%)

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG--VAPNCVIFT 201
           ++AR +   L R G+ P+V +YNI ++ LC++ +  +A +L   M   G    P+ V ++
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 202 TLMPSFIRKNETSKVIELLRSM-DKR---NVMPYASILSII 238
           T++  F ++ +  K       M D+R   NV+ Y SI++ +
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAAL 133


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 135/251 (53%), Gaps = 8/251 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G+   PN VTY  +I  LCK G VD A   F QM DE + PN++ Y SLIH  C  +
Sbjct: 398 RQHGL--NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFD 455

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++AE L +EM+DRG+  + + FN I+   CK  ++ E+ +L DLM++ GV+P      
Sbjct: 456 KWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKP------ 509

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N++ Y  LIDG C  GK+  A +L  S+   G+ P+ VTYN  I+  C   +MD A  LF
Sbjct: 510 NVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALF 569

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M   GV+PN + +  ++        T+   EL   + K       S  +II+  L KN
Sbjct: 570 KEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKN 629

Query: 246 EISLNSIPQFN 256
            ++  ++  F 
Sbjct: 630 NLTDEALRMFQ 640



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ VTY++II  LCK   +DKA E+   M    + PN +TYNS++HG+C +    EA  
Sbjct: 228 SPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIG 287

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G+ PD      I  Y  
Sbjct: 288 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD------IATYCT 341

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G    G L     L   + R G+ P+   +NI I A    E++D+A  +F  M   G
Sbjct: 342 LLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHG 401

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V +  ++    +       +     M    + P
Sbjct: 402 LNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN+++D LCK G   +A+++F  M    + P++ TY +L+ G+       E   
Sbjct: 298 EPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHA 357

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+  G+  D   FN+++    K  K+DEA  +   M Q G+ P      N+V YG 
Sbjct: 358 LLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNP------NVVTYGA 411

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK G + +A    + +   GL PN++ Y   IH+LC  ++ DKA +L L+M  +G
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRG 471

Query: 193 VAPNCVIFTTLMPSFIRKN---ETSKVIELL-RSMDKRNVMPYASIL 235
           +  N + F +++ S  ++    E+ K+ +L+ R   K NV+ Y++++
Sbjct: 472 ICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLI 518



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 9/238 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCYANDGN 68
           C P+  +   ++ GLC E    +A EL   M D+      P+VV+Y ++I+GF    D +
Sbjct: 154 CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSD 213

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A   + EM+DR +  DVVT++ I+  LCK + MD+A  +L  M++ GV P      N +
Sbjct: 214 KAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMP------NCM 267

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  ++ G C   + K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM 327

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +G+ P+   + TL+  +  K    ++  LL  M +  + P   + +I++    K E
Sbjct: 328 TKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQE 385



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 12/230 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y T+I+G  KEG  DKA   + +M D  I+P+VVTY+S+I   C     ++A  +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G+  + +T+N I+   C + +  EA   L  M   GV PD      +V Y  L
Sbjct: 254 LTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPD------VVTYNSL 307

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-G 192
           +D LCK G+   AR++  S+T+ GL P++ TY   +        + + H L LD+ V+ G
Sbjct: 308 MDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHAL-LDLMVRNG 366

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSII 238
           + P+  +F  L+ ++ ++ +  + + +   M +     NV+ Y +++ I+
Sbjct: 367 IHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGIL 416



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 6/235 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F V  KP+ VTYNT+I+G C+   +D A  LF +M    ++PN++TYN ++ G  +    
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRT 597

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A+ L++ +   G Q ++ T+N+I+  LCKN   DEA R    M Q     D   ++  
Sbjct: 598 AAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALR----MFQNLCLTD--LQLET 651

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             +  +I  L K+G+   A++L  + +  GL+PN  TY +    +     +++   LF  
Sbjct: 652 RTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFS 711

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           ME  G   +  +   ++   +++ E ++    L  +D+++    AS  S+ +DLL
Sbjct: 712 MEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 766



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TY+T+IDG C  G +D+A +L   M    + P+ VTYN+LI+G+C  +  ++A  
Sbjct: 508 KPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALA 567

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+  G+  +++T+N+I+  L   R+   A  L   + + G       ++ +  Y  
Sbjct: 568 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGT------QLELSTYNI 621

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK      A  + Q+L    L     T+NI I AL    + D+A DLF+     G
Sbjct: 622 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNG 681

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
           + PN   +  +  + I +    ++ +L  SM+       + +L+ IV +LL + EI+
Sbjct: 682 LVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEIT 738



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 107/247 (43%), Gaps = 10/247 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P   TY  +I   C+ G +D        +  +      +T+  L+ G C     ++A + 
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ---GGVRPDAFCEINIVA 129
           +   M +     DV +  +++  LC   +  EA  LL +M     GG  PD      +V+
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPD------VVS 198

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I+G  K G    A      +    + P+VVTY+  I ALC  + MDKA ++   M 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMV 258

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             GV PNC+ + +++  +    +  + I  L+ M    V P     + ++D L KN  S 
Sbjct: 259 KNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRST 318

Query: 250 NSIPQFN 256
            +   F+
Sbjct: 319 EARKIFD 325



 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 9/158 (5%)

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRPDAFCEIN 126
           +A ++F E++ RG  + +   N  + ++ ++      +R   +   G   V P       
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTP------T 86

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  YG LI   C+ G+L        ++ + G     +T+   +  LC D++   A D+ L
Sbjct: 87  VHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVL 146

Query: 187 -DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             M      P+    T L+     +N + + +ELL  M
Sbjct: 147 RRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMM 184


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 135/251 (53%), Gaps = 8/251 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G+   PN VTY  +I  LCK G VD A   F QM DE + PN++ Y SLIH  C  +
Sbjct: 398 RQHGL--NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFD 455

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++AE L +EM+DRG+  + + FN I+   CK  ++ E+ +L DLM++ GV+P      
Sbjct: 456 KWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKP------ 509

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N++ Y  LIDG C  GK+  A +L  S+   G+ P+ VTYN  I+  C   +MD A  LF
Sbjct: 510 NVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALF 569

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M   GV+PN + +  ++        T+   EL   + K       S  +II+  L KN
Sbjct: 570 KEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKN 629

Query: 246 EISLNSIPQFN 256
            ++  ++  F 
Sbjct: 630 NLTDEALRMFQ 640



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ VTY++II  LCK   +DKA E+   M    + PN +TYNS++HG+C +    EA  
Sbjct: 228 SPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIG 287

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G+ PD      I  Y  
Sbjct: 288 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD------IATYCT 341

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G    G L     L   + R G+ P+   +NI I A    E++D+A  +F  M   G
Sbjct: 342 LLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHG 401

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V +  ++    +       +     M    + P
Sbjct: 402 LNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTP 439



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN+++D LCK G   +A+++F  M    + P++ TY +L+ G+       E   
Sbjct: 298 EPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHA 357

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+  G+  D   FN+++    K  K+DEA  +   M Q G+ P      N+V YG 
Sbjct: 358 LLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNP------NVVTYGA 411

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK G + +A    + +   GL PN++ Y   IH+LC  ++ DKA +L L+M  +G
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRG 471

Query: 193 VAPNCVIFTTLMPSFIRKN---ETSKVIELL-RSMDKRNVMPYASIL 235
           +  N + F +++ S  ++    E+ K+ +L+ R   K NV+ Y++++
Sbjct: 472 ICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLI 518



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 9/238 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCYANDGN 68
           C P+  +   ++ GLC E    +A EL   M D+      P+VV+Y ++I+GF    D +
Sbjct: 154 CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSD 213

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A   + EM+DR +  DVVT++ I+  LCK + MD+A  +L  M++ GV P      N +
Sbjct: 214 KAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMP------NCM 267

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  ++ G C   + K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM 327

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +G+ P+   + TL+  +  K    ++  LL  M +  + P   + +I++    K E
Sbjct: 328 TKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQE 385



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 12/230 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y T+I+G  KEG  DKA   + +M D  I+P+VVTY+S+I   C     ++A  +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G+  + +T+N I+   C + +  EA   L  M   GV PD      +V Y  L
Sbjct: 254 LTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPD------VVTYNSL 307

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-G 192
           +D LCK G+   AR++  S+T+ GL P++ TY   +        + + H L LD+ V+ G
Sbjct: 308 MDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHAL-LDLMVRNG 366

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSII 238
           + P+  +F  L+ ++ ++ +  + + +   M +     NV+ Y +++ I+
Sbjct: 367 IHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGIL 416



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TY+T+IDG C  G +D+A +L   M    + P+ VTYN+LI+G+C  +  ++A  
Sbjct: 508 KPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALA 567

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+  G+  +++T+N+I+  L   R+   A  L   + + G       ++ +  Y  
Sbjct: 568 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGT------QLELSTYNI 621

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK      A  + Q+L    L     T+NI I AL    + D+A DLF  +   G
Sbjct: 622 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANG 681

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+   ++ +  + I +    ++ +L  SM++      + +L SI+  LL + +I+
Sbjct: 682 LVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDIT 738



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F V  KP+ VTYNT+I+G C+   +D A  LF +M    ++PN++TYN ++ G  +    
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRT 597

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A+ L++ +   G Q ++ T+N+I+  LCKN   DEA R    M Q     D   ++  
Sbjct: 598 AAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALR----MFQNLCLTD--LQLET 651

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             +  +I  L K+G+   A++L  +L+  GL+P+V TY++    L     +++  DLFL 
Sbjct: 652 RTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLS 711

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           ME  G   N  +  +++   +++ + ++    L  +D+++    AS  S++
Sbjct: 712 MEENGCTANSRMLNSIVRKLLQRGDITRAGTYLSMIDEKHFSLEASTASLL 762



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 107/247 (43%), Gaps = 10/247 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P   TY  +I   C+ G +D        +  +      +T+  L+ G C     ++A + 
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ---GGVRPDAFCEINIVA 129
           +   M +     DV +  +++  LC   +  EA  LL +M     GG  PD      +V+
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPD------VVS 198

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I+G  K G    A      +    + P+VVTY+  I ALC  + MDKA ++   M 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMV 258

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             GV PNC+ + +++  +    +  + I  L+ M    V P     + ++D L KN  S 
Sbjct: 259 KNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRST 318

Query: 250 NSIPQFN 256
            +   F+
Sbjct: 319 EARKIFD 325



 Score = 44.3 bits (103), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 9/158 (5%)

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRPDAFCEIN 126
           +A ++F E++ RG  + +   N  + ++ ++      +R   +   G   V P       
Sbjct: 33  DARHVFEELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTP------T 86

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  YG LI   C+ G+L        ++ + G     +T+   +  LC D++   A D+ L
Sbjct: 87  VHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVL 146

Query: 187 -DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             M      P+    T L+     +N + + +ELL  M
Sbjct: 147 RRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMM 184


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y T+IDG CK G V  A  LF +M+   I+P+ +TY ++I G C      EA+ L
Sbjct: 256 PDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKL 315

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ + L+ D VT+  ++D  CK  KM EA  L + M+Q G+ P      NIV Y  L
Sbjct: 316 FHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTP------NIVTYTAL 369

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            DGLCK G++  A EL   + R GL  N+ TYN  ++ LC    +D+A  L  DMEV G 
Sbjct: 370 ADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 429

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+ V +TTLM ++ +  E  +  ELLR M  R + P     +++++
Sbjct: 430 HPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMN 476



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 9/233 (3%)

Query: 10  VVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +VCK   P+ VTY  +IDG CKEG + +A  L  QM    + PN+VTY +L  G C   +
Sbjct: 319 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 378

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A  L  EM  +GL+ ++ T+N +++ LCK   +D+A +L+  M   G  PDA     
Sbjct: 379 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDA----- 433

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  L+D  CK  ++  A EL + +    L P VVT+N+ ++  C    ++    L  
Sbjct: 434 -VTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLK 492

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            M  KG+ PN   + +L+  +  +N      E+ R M  + V+P  +  +I++
Sbjct: 493 WMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 545



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN++++GLCK G +D+A +L   M+    +P+ VTY +L+  +C + +   A  L 
Sbjct: 397 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 456

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M+DR LQ  VVTFNV+M+  C +  +++  +LL  M++ G+ P+A        Y  LI
Sbjct: 457 RQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNA------TTYNSLI 510

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    ++   E+ + +   G++P+  TYNI I   C    M +A  L  DM  KG  
Sbjct: 511 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFN 570

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
                +  L+  F ++ +  +  EL   M +  ++    I +I  D+
Sbjct: 571 LTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADI 617



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+N +++G C  G ++  ++L   M ++ I PN  TYNSLI  +C  N+      
Sbjct: 465 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTE 524

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M  +G+  D  T+N+++   CK R M EA  L   M+  G        + + +Y  
Sbjct: 525 IYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGF------NLTVSSYNA 578

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           LI G  K  K   AREL + + R GL+ +   YNI
Sbjct: 579 LIKGFYKRKKFLEARELFEQMRREGLVADREIYNI 613



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 13/220 (5%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIH-------GFCYANDGNEAEYLFIEMMDRGLQS 84
           V  A++LF +M +  +  +V + N  I        G   A  G     L  EM  +GL+ 
Sbjct: 162 VSFARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKP 221

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           +  T+N ++  LCK  K+ EA R+L  MI  G+ PD       V Y  LIDG CK+G + 
Sbjct: 222 NPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG------VIYTTLIDGFCKLGNVS 275

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
           +A  L   + +  + P+ +TY   I  LC   ++ +A  LF +M  K + P+ V +T L+
Sbjct: 276 SAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 335

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + ++ +  +   L   M +  + P     + + D L K
Sbjct: 336 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCK 375



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+  TYN +I G CK   + +A  L   M  +  N  V +YN+LI GF       
Sbjct: 533 GVV--PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFL 590

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           EA  LF +M   GL +D   +N+  D      KM+    L D  I+
Sbjct: 591 EARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIE 636


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y T+IDG CK G V  A  LF +M+   I+P+ +TY ++I G C      EA+ L
Sbjct: 356 PDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKL 415

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ + L+ D VT+  ++D  CK  KM EA  L + M+Q G+ P      NIV Y  L
Sbjct: 416 FHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTP------NIVTYTAL 469

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            DGLCK G++  A EL   + R GL  N+ TYN  ++ LC    +D+A  L  DMEV G 
Sbjct: 470 ADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 529

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+ V +TTLM ++ +  E  +  ELLR M  R + P     +++++
Sbjct: 530 HPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMN 576



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 9/233 (3%)

Query: 10  VVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +VCK   P+ VTY  +IDG CKEG + +A  L  QM    + PN+VTY +L  G C   +
Sbjct: 419 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 478

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A  L  EM  +GL+ ++ T+N +++ LCK   +D+A +L+  M   G  PDA     
Sbjct: 479 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDA----- 533

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  L+D  CK  ++  A EL + +    L P VVT+N+ ++  C    ++    L  
Sbjct: 534 -VTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLK 592

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            M  KG+ PN   + +L+  +  +N      E+ R M  + V+P  +  +I++
Sbjct: 593 WMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 645



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NT +YN I   LC+ G V +A +L LQM+     P+V++Y+++I+G+C   +      L 
Sbjct: 252 NTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLI 311

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  +GL+ +  T+N ++  LCK  K+ EA R+L  MI  G+ PD       V Y  LI
Sbjct: 312 EEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG------VIYTTLI 365

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK+G + +A  L   + +  + P+ +TY   I  LC   ++ +A  LF +M  K + 
Sbjct: 366 DGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLE 425

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+ V +T L+  + ++ +  +   L   M +  + P     + + D L K
Sbjct: 426 PDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCK 475



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN++++GLCK G +D+A +L   M+    +P+ VTY +L+  +C + +   A  L 
Sbjct: 497 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 556

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M+DR LQ  VVTFNV+M+  C +  +++  +LL  M++ G+ P+A        Y  LI
Sbjct: 557 RQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNA------TTYNSLI 610

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    ++   E+ + +   G++P+  TYNI I   C    M +A  L  DM  KG  
Sbjct: 611 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFN 670

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
                +  L+  F ++ +  +  EL   M +  ++    I +I  D+
Sbjct: 671 LTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADI 717



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+N +++G C  G ++  ++L   M ++ I PN  TYNSLI  +C  N+      
Sbjct: 565 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTE 624

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M  +G+  D  T+N+++   CK R M EA  L   M+  G        + + +Y  
Sbjct: 625 IYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGF------NLTVSSYNA 678

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           LI G  K  K   AREL + + R GL+ +   YNI
Sbjct: 679 LIKGFYKRKKFLEARELFEQMRREGLVADREIYNI 713



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 20/206 (9%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           ++D  +NPN+    S          G+  E L     D G  SD   F++    L +   
Sbjct: 149 IQDFWVNPNLDVGVSF---------GHFVEQLIYTYKDWG--SDPRVFDIFFQVLVEAGM 197

Query: 102 MDEATRLLDLMIQGG--VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           +DEA +L D M+  G  +  D+ C + I      +DG+      K A ++       G+ 
Sbjct: 198 LDEARKLFDKMLNYGLLISVDS-CNLFISHLSEDLDGI------KIALKVFVEFPEVGVC 250

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            N  +YNI  H+LC   ++ +AH L L ME++G  P+ + ++T++  + +  E  +V++L
Sbjct: 251 WNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKL 310

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKN 245
           +  M  + + P     + ++ LL K 
Sbjct: 311 IEEMQIKGLKPNPYTYNGVILLLCKT 336



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+  TYN +I G CK   + +A  L   M  +  N  V +YN+LI GF       
Sbjct: 633 GVV--PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFL 690

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           EA  LF +M   GL +D   +N+  D      KM+    L D  I+
Sbjct: 691 EARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIE 736


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 132/243 (54%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  +I  LCK G V+ A   F QM DE ++P  + YNSLIHG C  N    AE L
Sbjct: 374 PDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 433

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+DRG+  + + FN I+D  CK  ++ E+ +L DLM++ GV+PD      I+ Y  L
Sbjct: 434 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD------IITYSTL 487

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L   +   GL PN VTY   I+  C   +M  A  LF +ME  GV
Sbjct: 488 IDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGV 547

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +P+ + +  ++    +   T+   EL   + +       S  +II+  L KN+++ +++ 
Sbjct: 548 SPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALR 607

Query: 254 QFN 256
            F 
Sbjct: 608 MFQ 610



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPNTVTY T+I+G CK   +  A  LF +M+   ++P+++TYN ++ G         A+ 
Sbjct: 513 KPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 572

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ + + G Q ++ T+N+I+  LCKN+  D+A R+   +    ++ +A        +  
Sbjct: 573 LYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEA------RTFNI 626

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID L K+G+   A++L  + +  GL+PN  TY +    +     +++   LFL ME  G
Sbjct: 627 MIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 686

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              +  +   ++   +++ E ++    L  +D+++    AS  S+ +DLL
Sbjct: 687 CTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 736



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY+T+IDG C  G +D+A +L   M    + PN VTY +LI+G+C  +   +A  
Sbjct: 478 KPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALV 537

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       +I +  Y  
Sbjct: 538 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT------QIELSTYNI 591

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK     +A  + Q+L    L     T+NI I AL    +  +A DLF+     G
Sbjct: 592 ILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNG 651

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
           + PN   +  +  + I +    ++ +L  SM+       + +L+ IV +LL + EI+
Sbjct: 652 LVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 708



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 11/220 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY++II  LCK   +DKA E+   M    + PN  TY S++HG+C +    EA   
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGF 288

Query: 74  FIEMMDRG-----LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
             ++   G     L+ D+ T+  ++        +     LLDLM++ G+ PD +      
Sbjct: 289 LKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHY------ 342

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI    K GK+  A  +   + + GL P+ VTY   I  LC   +++ A   F  M
Sbjct: 343 VYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQM 402

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             +G++P  +++ +L+      N+  +  EL+  M  R +
Sbjct: 403 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 442



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 4/230 (1%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           MA+G    G    P+ V+Y T+I+G  KEG   KA   + +M D  I+P+VVTY+S+I  
Sbjct: 184 MADGR---GGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAA 240

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     ++A  +   M+  G+  +  T+  IM   C + +  EA   L  +   GV PD
Sbjct: 241 LCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPD 300

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
              E +I  Y  L+ G    G L     L   + R G+ P+   YNI I A     ++D+
Sbjct: 301 GL-EPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDE 359

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  +F  M  +G+ P+ V +  ++    +       +     M    + P
Sbjct: 360 AMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 409



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 16/243 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCYANDGN 68
           C P+  +   ++ GLC E    +A EL   M D       P+VV+Y ++I+GF    D  
Sbjct: 154 CMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSG 213

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A   + EM+DR +  DVVT++ I+  LCK + MD+A  +L  M++ GV P      N  
Sbjct: 214 KAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMP------NCR 267

Query: 129 AYGCLIDGLCKIGKLKNA-----RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            Y  ++ G C  G+ K A     +  S  +   GL P++ TY   +        +   H 
Sbjct: 268 TYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHA 327

Query: 184 LFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           L LD+ V+ G+ P+  ++  L+ ++ ++ +  + + +   M ++ + P A     ++ +L
Sbjct: 328 L-LDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGIL 386

Query: 243 VKN 245
            K+
Sbjct: 387 CKS 389



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 115/263 (43%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY T++ G   +G +     L   M    I+P+   YN LI  +      +EA  
Sbjct: 303 EPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAML 362

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +F +M  +GL  D VT+  ++  LCK+ ++++A    + MI  G+ P            C
Sbjct: 363 VFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 422

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                +N + +  +ID  CK G++  + +L   + R G+ P+++
Sbjct: 423 TCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 482

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY+  I   C   +MD+A  L   M   G+ PN V + TL+  + + +     + L + M
Sbjct: 483 TYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEM 542

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
           +   V P     +II+  L +  
Sbjct: 543 ESSGVSPDIITYNIILQGLFQTR 565



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 10/221 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P   TY  +I   C+   +D        +  +      +T+  L+ G C     ++A + 
Sbjct: 85  PTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ---GGVRPDAFCEINIVA 129
           +   M +     DV +  +++  LC   +  EA  L  +M     GG  PD      +V+
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPD------VVS 198

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I+G  K G    A      +    + P+VVTY+  I ALC  + MDKA ++   M 
Sbjct: 199 YTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMV 258

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             GV PNC  +T++M  +    +  + I  L+ +    V P
Sbjct: 259 KNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEP 299



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 16/199 (8%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
            + P V TY  LI   C A+  +        ++ +G + + +TF  ++  LC +++  +A
Sbjct: 82  KVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDA 141

Query: 106 TRL-LDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGKLKNARELSQSLT---RAGLMP 160
             + L  M +    PD F C I       L+ GLC   + + A EL   +      G  P
Sbjct: 142 MDIVLRRMTELSCMPDVFSCTI-------LLKGLCDENRSQEALELPHMMADGRGGGSAP 194

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +VV+Y   I+    +    KA+  + +M  + ++P+ V +++++ +  +     K +E+L
Sbjct: 195 DVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 221 RSMDKRNVMP----YASIL 235
            SM K  VMP    Y SI+
Sbjct: 255 TSMVKNGVMPNCRTYTSIM 273



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           V T+ +++   C+  ++D     L  +++ G R +A      + +  L+ GLC   +  +
Sbjct: 87  VHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEA------ITFTPLLKGLCADKRTSD 140

Query: 146 ARELS-QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL---FLDMEVKGVAPNCVIFT 201
           A ++  + +T    MP+V +  I +  LC++ +  +A +L     D    G AP+ V +T
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYT 200

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           T++  F ++ ++ K       M  R + P     S I+  L K +
Sbjct: 201 TVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQ 245


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/259 (35%), Positives = 145/259 (55%), Gaps = 6/259 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N +  +G+  KP  ++Y+ IID LCK+   D+A++LF +MK + + P V++Y SLIHG
Sbjct: 227 MLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHG 286

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC      EA+ LF EM+++G+Q +VVTFNV++D LCK  K+ EA  LL++MIQ G+ P 
Sbjct: 287 FCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVP- 345

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N++ Y  LI+G C +G L +AREL  S+   G  P+V+ Y + I+  C   ++++
Sbjct: 346 -----NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEE 400

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  L+  M   G  P+   +  L+    +  +     +L   M    +     I  I ++
Sbjct: 401 AMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLN 460

Query: 241 LLVKNEISLNSIPQFNRQK 259
            L KN     ++  FN+ K
Sbjct: 461 GLCKNGCLFEAMELFNKLK 479



 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 136/280 (48%), Gaps = 64/280 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT+N +ID LCKEG V +AK+L   M    I PN++TYNSLI GFC   D N A  
Sbjct: 309 QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 368

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL-------------------LDLMI 113
           LF+ M  +G + DV+ + V+++  CK  K++EA +L                   L  + 
Sbjct: 369 LFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLF 428

Query: 114 QGGVRPDA-------------------------FCE--------------------INIV 128
           QGG   DA                          C+                    ++I 
Sbjct: 429 QGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIE 488

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            + CLIDGLCK GKL+ A EL + L +  L P+VVTYNI IH  C   Q+ KA+ LF  M
Sbjct: 489 CFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKM 548

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           E  G  P+ + + TL+  F    +  KV+ELL  M +R+V
Sbjct: 549 EKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDV 588



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 12/237 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   ++  ++ GL K     +   L+ QM+   I+P+  T N L++  C  N   E   +
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAV 153

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ RG   D+VT+  ++  LC   ++ +A  L   M + G  P+A      + YG L
Sbjct: 154 MAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNA------ITYGTL 207

Query: 134 IDGLCKIGKLKNARELSQ------SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + GLC+ G +  A +L Q      SL      P V++Y+I I ALC D + D+A DLF +
Sbjct: 208 MKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEE 267

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M+V+G+ P  + +T+L+  F    +  +   L   M  + V P     ++++D+L K
Sbjct: 268 MKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCK 324


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/238 (35%), Positives = 141/238 (59%), Gaps = 6/238 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ ++Y T+I+G CK   +DKA  LF +M  +   P+  TYN+L+HG C+     +A  L
Sbjct: 334 PDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIAL 393

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ RG   D+VT+++++D LCKN  ++EA  LL  +    + PD      I  Y  +
Sbjct: 394 FHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPD------IQVYNII 447

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG+C+ G+L+ AR+L  +L+  GL P+V TYNI IH LC    +++A+ LF++M+    
Sbjct: 448 IDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDC 507

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           +P+   + T+   F++ NET + I+LL  M  R      S  +++V++L  + +  +S
Sbjct: 508 SPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDGLDQSS 565



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ V Y +IID LCK+  V +A  LF QM  + I+P++ TY SL+H  C   +     
Sbjct: 192 CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVT 251

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M++  +  DVV F+ ++D LCK  K+ EA  ++D+MIQ GV PD      +V Y 
Sbjct: 252 TLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPD------VVTYT 305

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C   ++  A ++   + R G  P+V++Y   I+  C   ++DKA  LF +M  K
Sbjct: 306 TLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRK 365

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              P+   + TLM            I L   M  R  MP     SI++D L KN
Sbjct: 366 EWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKN 419



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 125/247 (50%), Gaps = 29/247 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+ T+I GLC EG + +A  LF +M DE   PNVVTY +LI+G C   + + A  
Sbjct: 123 QPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIR 182

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L   M     Q DVV +  I+D LCK+R++ EA  L   M+  G+ PD F          
Sbjct: 183 LLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALC 242

Query: 123 --CEI-----------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
             CE                  ++V +  ++D LCK GK+  A E+   + + G+ P+VV
Sbjct: 243 NLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVV 302

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   +   C   +MD+A  +F  M  KG AP+ + +TTL+  + + ++  K + L   M
Sbjct: 303 TYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEM 362

Query: 224 DKRNVMP 230
            ++  +P
Sbjct: 363 CRKEWIP 369



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+ V +  ++  + K         L  QM    + PNV T N LI+ 
Sbjct: 41  LSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINS 100

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+ N    A  +  +++  G Q D  TF  ++  LC   K+ EA  L D MI  G +P 
Sbjct: 101 FCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQP- 159

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V YG LI+GLCK+G    A  L +S+ +    P+VV Y   I +LC D Q+ +
Sbjct: 160 -----NVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTE 214

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF  M  +G++P+   +T+L+ +     E   V  LL  M    ++P   I S +VD
Sbjct: 215 AFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 274

Query: 241 LLVK 244
            L K
Sbjct: 275 ALCK 278



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           +V F  ++  + K +       L   M   GV P      N+     LI+  C + ++  
Sbjct: 56  IVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPP------NVYTLNILINSFCHLNRVGF 109

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           A  +   + + G  P+  T+   I  LC + ++ +A  LF  M  +G  PN V + TL+ 
Sbjct: 110 AFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLIN 169

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              +   TS  I LLRSM++ N  P   I + I+D L K+
Sbjct: 170 GLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 209


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/232 (38%), Positives = 130/232 (56%), Gaps = 8/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +IDGLCK G VD+A  L  +M+ + + P  VTYNSLI G C A   +EA  L
Sbjct: 79  PNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDL 137

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G   D+ T+  ++   CK++K D+A R+ + ++  G RPD      +V Y CL
Sbjct: 138 LEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPD------VVTYSCL 191

Query: 134 IDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           IDGLCK G+LK A +L   + ++G  MPN VTYN  I   C   +MD+A +L   M   G
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +P+ V +TTLM  F +        +LL  M ++ + P     + ++D L +
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR 303



 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 5/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VTYN++I GLCK     +A +L  +M      P++ TY +LI GFC +   ++A 
Sbjct: 111 CVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDAL 170

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +++ RG + DVVT++ ++D LCK  ++ EA  L   MI+ G      C  N V Y 
Sbjct: 171 RVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-----CMPNTVTYN 225

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C++GK+  A  L + +   G  P+VVTY   ++  C   ++D A+DL   M  K
Sbjct: 226 SLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 285

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P+ V FT+LM    R+N  S  + +L  M +++  P     + I+D
Sbjct: 286 GLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 334



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNTVTYN++I G C+ G +D+A  L  +M +   +P+VVTY +L++GFC     ++A 
Sbjct: 217 CMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAY 276

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M  +GL  DVVTF  +MD LC+  ++ +A  +L  M +    P  +       Y 
Sbjct: 277 DLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVY------TYN 330

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DG C+  +L+ AR+    L      PNVV++NI I  LC   +  +A +L  +   +
Sbjct: 331 TILDGYCRANQLEEARKF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRR 388

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM-DKRNVMPYASILSIIV 239
              P+ V++TT++    R+ +  +   + R M ++   +P +   S +V
Sbjct: 389 RCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLV 437



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 11/181 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYNTI+DG C+   +++A++  L+  D    PNVV++N +I G C  N  +EA 
Sbjct: 322 CSPTVYTYNTILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAM 379

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  E   R    DVV +  ++D LC+ +K+DEA R+   M++     +  C  N + Y 
Sbjct: 380 ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLE-----EPGCLPNSITYS 434

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLC  G L  AR         G +PN+ TYN+ I A     + + A +L  DM  +
Sbjct: 435 TLVTGLCNAGMLDRAR----GYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490

Query: 192 G 192
           G
Sbjct: 491 G 491



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 7/212 (3%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           + + + VTY SLI G C      +A     +M+ +G   DV T+  ++  LC   ++ EA
Sbjct: 6   SCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
            + L+ M    + P      N+V Y  LIDGLCK G++  A  L   + R   +P  VTY
Sbjct: 66  RKFLEEMANRNLTP------NVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTY 118

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  I  LC  E+  +A+DL  +M   G  P+   +TTL+  F +  ++   + +   +  
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 178

Query: 226 RNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           R   P     S ++D L K      +I  F R
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGR 210


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/232 (38%), Positives = 130/232 (56%), Gaps = 8/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +IDGLCK G VD+A  L  +M+ + + P  VTYNSLI G C A   +EA  L
Sbjct: 79  PNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDL 137

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G   D+ T+  ++   CK++K D+A R+ + ++  G RPD      +V Y CL
Sbjct: 138 LEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPD------VVTYSCL 191

Query: 134 IDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           IDGLCK G+LK A +L   + ++G  MPN VTYN  I   C   +MD+A +L   M   G
Sbjct: 192 IDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 251

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +P+ V +TTLM  F +        +LL  M ++ + P     + ++D L +
Sbjct: 252 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR 303



 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 5/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VTYN++I GLCK     +A +L  +M      P++ TY +LI GFC +   ++A 
Sbjct: 111 CVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDAL 170

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +++ RG + DVVT++ ++D LCK  ++ EA  L   MI+ G      C  N V Y 
Sbjct: 171 RVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-----CMPNTVTYN 225

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C++GK+  A  L + +   G  P+VVTY   ++  C   ++D A+DL   M  K
Sbjct: 226 SLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 285

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P+ V FT+LM    R+N  S  + +L  M +++  P     + I+D
Sbjct: 286 GLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 334



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 115/212 (54%), Gaps = 8/212 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNTVTYN++I G C+ G +D+A  L  +M +   +P+VVTY +L++GFC     ++A 
Sbjct: 217 CMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAY 276

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M  +GL  DVVTF  +MD LC+  ++ +A  +L  M +    P  +       Y 
Sbjct: 277 DLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVY------TYN 330

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DG C+  +L+ AR+    L      PNVV++NI I  LC   +  +A +L  +   +
Sbjct: 331 TILDGYCRANQLEEARKF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRR 388

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
              P+ V++TT++    R+ +  +   + R M
Sbjct: 389 RCNPDVVMYTTVIDGLCREKKVDEACRVYRKM 420



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 94/181 (51%), Gaps = 11/181 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYNTI+DG C+   +++A++  L+  D    PNVV++N +I G C  N  +EA 
Sbjct: 322 CSPTVYTYNTILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAM 379

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  E   R    DVV +  ++D LC+ +K+DEA R+   M++     +  C  N + Y 
Sbjct: 380 ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLE-----EPGCLPNSITYS 434

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLC  G L  AR         G +PN+ TYN+ I A     + + A +L  DM  +
Sbjct: 435 TLITGLCNAGMLDRAR----GYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490

Query: 192 G 192
           G
Sbjct: 491 G 491



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 7/212 (3%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           + + + VTY SLI G C      +A     +M+ +G   DV T+  ++  LC   ++ EA
Sbjct: 6   SCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
            + L+ M    + P      N+V Y  LIDGLCK G++  A  L   + R   +P  VTY
Sbjct: 66  RKFLEEMANRNLTP------NVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTY 118

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  I  LC  E+  +A+DL  +M   G  P+   +TTL+  F +  ++   + +   +  
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 178

Query: 226 RNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           R   P     S ++D L K      +I  F R
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGR 210


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 145/278 (52%), Gaps = 30/278 (10%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+   YN++I G CKEG ++KA +L+ +M    INPN+V YN+LI+G C   +  
Sbjct: 656 GVV--PDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVT 713

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--CEI- 125
           +A  LF E+ ++ L  DVVT++ I+D  CK+  + EA +L D MI  G+ PD +  C + 
Sbjct: 714 KARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILI 773

Query: 126 -------------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
                                    ++ A+  LID  CK GK+  AREL   +    L P
Sbjct: 774 DGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTP 833

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           N+VTY I I A    E M++A  LFLDME + + PN + +T+L+ S+ +     K+I L 
Sbjct: 834 NIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLF 893

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258
           + M+ R +   A    ++     K   SL ++   N+ 
Sbjct: 894 KDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKS 931



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  TYN  I GLC+ G VD+A E+   M ++ + P+  TY  L+ GFC      EA+
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M   GL  +  T+  ++D   K   ++EA R+ D MI  G++      +N+V Y 
Sbjct: 332 LIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLK------LNVVTYN 385

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+ K G++  A  L   +  AGL P+  TYN+ I        M KA +L  +M+ +
Sbjct: 386 AMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKAR 445

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + P+   ++ L+      ++  K  E+L  M +  V P
Sbjct: 446 KLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKP 484



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T TYN +IDG  K   + KA EL  +MK   + P+  TY+ LI G C+++D  +A  
Sbjct: 413 EPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANE 472

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G++ +V  +  ++    +  + + A  LL +MI  GV PD FC      Y C
Sbjct: 473 VLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFC------YNC 526

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+  K++ A+ L   +   G+ PN  TY   I+      ++  A   F DM   G
Sbjct: 527 LIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSG 586

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + PN VI+T L+        T + +   + M ++ ++P     S I+  L KN
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKN 639



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY   I+   K G +  A+  F  M    I PN V Y  LI G C   +  EA  
Sbjct: 553 KPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALS 612

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F  M+++GL  D+  ++ I+  L KN K  EA  +    ++ GV PD F       Y  
Sbjct: 613 TFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFL------YNS 666

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK G ++ A +L   +   G+ PN+V YN  I+ LC   ++ KA +LF ++E K 
Sbjct: 667 LISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKD 726

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+ V ++T++  + +    ++  +L   M  + + P   I  I++D
Sbjct: 727 LVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILID 774



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 7/229 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I   CK G V K K +  +M+ E   PN+ TYN+ I G C     +EA  +
Sbjct: 240 PDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-CKPNLFTYNAFIGGLCQTGAVDEALEV 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              MM++GL  D  T+ +++D  CK ++  EA  + + M   G+ P+ F       Y  L
Sbjct: 299 KKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRF------TYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K G ++ A  +   +   GL  NVVTYN  I  +    +M KA  LF +M + G+
Sbjct: 353 IDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGL 412

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            P+   +  L+  +++ ++ +K  ELL  M  R + P     S+++  L
Sbjct: 413 EPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGL 461



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   Y T+I    +E   + A EL   M    + P++  YN LI G C A    EA+ 
Sbjct: 483 KPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKM 542

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L ++M ++G++ +  T+   ++   K+ ++  A R    M+  G+ P      N V Y  
Sbjct: 543 LLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVP------NNVIYTI 596

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C +G    A    + +   GL+P++  Y+  IH+L  + +  +A  +FL     G
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V P+  ++ +L+  F ++ +  K  +L   M    + P   + + +++ L K
Sbjct: 657 VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCK 708



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 18   TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
             +N++ID  CK G V +A+ELF  M D+ + PN+VTY  LI  +  A    EAE LF++M
Sbjct: 802  AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDM 861

Query: 78   MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
              R +  + +T+  ++    +     +   L   M   G+  DA      +AYG +    
Sbjct: 862  ETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDA------IAYGVMASAY 915

Query: 138  CKIGK-LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK GK L+  + L++SL     + + V ++  I  LC ++Q+    +L  +M  + ++ +
Sbjct: 916  CKEGKSLEALKLLNKSLVEGIKLEDDV-FDALIFHLCKEKQISTVLELLSEMGKEELSLS 974

Query: 197  CVIFTTLMPSFIR---KNETSKVIELLRSM 223
                 TL+  F +   ++E SKV+ +++ +
Sbjct: 975  SKTCNTLLLGFYKSGNEDEASKVLGVMQRL 1004



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 10/190 (5%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY- 72
            PN VTY  +ID   K   +++A++LFL M+  NI PN +TY SL+    Y   GN  +  
Sbjct: 833  PNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLL--LSYNQIGNRFKMI 890

Query: 73   -LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             LF +M  RG+  D + + V+    CK  K  EA +LL+  +  G++      +    + 
Sbjct: 891  SLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIK------LEDDVFD 944

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             LI  LCK  ++    EL   + +  L  +  T N  +         D+A  +   M+  
Sbjct: 945  ALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRL 1004

Query: 192  GVAPNCVIFT 201
            G  P  +  T
Sbjct: 1005 GWVPTSLSLT 1014


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 86/243 (35%), Positives = 134/243 (55%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +I  LCK G V+ A   F QM DE ++P  + YNSLIHG C  N    AE L
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 463

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+DRG+  + + FN I+D  CK  ++ E+ +L +LM++ GV+P      N++ Y  L
Sbjct: 464 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP------NVITYNTL 517

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G C  GK+  A +L   +   GL PN VTY+  I+  C   +M+ A  LF +ME  GV
Sbjct: 518 INGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV 577

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +P+ + +  ++    +   T+   EL   + +       S  +II+  L KN+++ +++ 
Sbjct: 578 SPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQ 637

Query: 254 QFN 256
            F 
Sbjct: 638 MFQ 640



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 137/267 (51%), Gaps = 34/267 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGN 68
           C PN  +YN ++ GLC E    +A EL   M D+      P+VV+Y ++I+GF    D +
Sbjct: 154 CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSD 213

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-------- 120
           +A   + EM+DRG+  DVVT+N I+  LCK + MD+A  +L+ M++ GV PD        
Sbjct: 214 KAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 273

Query: 121 -AFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             +C                    E ++V Y  L+D LCK G+   AR++  S+T+ GL 
Sbjct: 274 HGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLK 333

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIE 218
           P + TY   +        + + H L LD+ V+ G+ P+  +F+ L+ ++ ++ +  + + 
Sbjct: 334 PEITTYGTLLQGYATKGALVEMHGL-LDLMVRNGIHPDHYVFSILICAYAKQGKVDQAML 392

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKN 245
           +   M ++ + P A     ++ +L K+
Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKS 419



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN+II  LCK   +DKA E+   M    + P+ +TYNS++HG+C +    EA   
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT++++MD LCKN +  EA ++ D M + G++P+      I  YG L
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE------ITTYGTL 342

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ P+   ++I I A     ++D+A  +F  M  +G+
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 402

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V +  ++    +       +     M    + P
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TYNT+I+G C  G +D+A +L   M    + PN VTY++LI+G+C  +   +A  
Sbjct: 508 KPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALV 567

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       +I +  Y  
Sbjct: 568 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT------QIELSTYNI 621

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK     +A ++ Q+L    L     T+NI I AL    + D+A DLF+     G
Sbjct: 622 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 681

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
           + PN   +  +  + I +    ++ +L  SM+       + +L+ IV +LL + EI+
Sbjct: 682 LVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 738



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPNTVTY+T+I+G CK   ++ A  LF +M+   ++P+++TYN ++ G         A+ 
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ + + G Q ++ T+N+I+  LCKN+  D+A ++   +    ++ +A        +  
Sbjct: 603 LYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEA------RTFNI 656

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID L K+G+   A++L  + +  GL+PN  TY +    +     +++   LFL ME  G
Sbjct: 657 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              +  +   ++   +++ E ++    L  +D+++    AS  S+ +DLL
Sbjct: 717 CTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 766



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY+ ++D LCK G   +A+++F  M    + P + TY +L+ G+       E   
Sbjct: 298 EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+  G+  D   F++++    K  K+D+A  +   M Q G+ P+A      V YG 
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNA------VTYGA 411

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK G++++A    + +   GL P  + YN  IH LC   + ++A +L L+M  +G
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471

Query: 193 VAPNCVIFTTLMPSFIRKN---ETSKVIELL-RSMDKRNVMPYASIL 235
           +  N + F +++ S  ++    E+ K+ EL+ R   K NV+ Y +++
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 14/199 (7%)

Query: 45  ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
           + + P++ TY  LI   C A   +        ++ +G + D + F  ++  LC +++  +
Sbjct: 81  DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 140

Query: 105 ATRL-LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT---RAGLMP 160
           A  + L  M + G  P      N+ +Y  L+ GLC   + + A EL   +      G  P
Sbjct: 141 AMDIVLRRMTELGCIP------NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPP 194

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +VV+Y   I+    +   DKA+  + +M  +G+ P+ V + +++ +  +     K +E+L
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 221 RSMDKRNVMP----YASIL 235
            +M K  VMP    Y SIL
Sbjct: 255 NTMVKNGVMPDCMTYNSIL 273



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D+ T+ +++   C+  ++D     L  +I+ G R DA      +A+  L+ GLC   +  
Sbjct: 86  DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDA------IAFTPLLKGLCADKRTS 139

Query: 145 NARELS-QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF---LDMEVKGVAPNCVIF 200
           +A ++  + +T  G +PNV +YNI +  LC++ +  +A +L     D    G  P+ V +
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           TT++  F ++ ++ K       M  R ++P     + I+  L K +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQ 245


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 86/243 (35%), Positives = 134/243 (55%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +I  LCK G V+ A   F QM DE ++P  + YNSLIHG C  N    AE L
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 463

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+DRG+  + + FN I+D  CK  ++ E+ +L +LM++ GV+P      N++ Y  L
Sbjct: 464 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP------NVITYNTL 517

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G C  GK+  A +L   +   GL PN VTY+  I+  C   +M+ A  LF +ME  GV
Sbjct: 518 INGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV 577

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +P+ + +  ++    +   T+   EL   + +       S  +II+  L KN+++ +++ 
Sbjct: 578 SPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQ 637

Query: 254 QFN 256
            F 
Sbjct: 638 MFQ 640



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGN 68
           C PN  +YN ++ GLC E    +A EL   M D+      P+VV+Y ++I+GF    D +
Sbjct: 154 CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSD 213

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A   + EM+DRG+  DVVT+N I+  LCK + MD+A  +L+ M++ GV PD       +
Sbjct: 214 KAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC------M 267

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  ++ G C  G+ K A    + +   G+ P+VVTY++ +  LC + +  +A  +F  M
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             +G+ P    + TL+  +  K    ++  LL  M +  + P   + SI++
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 8/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y T+I+G  KEG  DKA   + +M D  I P+VVTYNS+I   C A   ++A  +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G+  D +T+N I+   C + +  EA   L  M   GV PD      +V Y  L
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPD------VVTYSLL 307

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-G 192
           +D LCK G+   AR++  S+T+ GL P + TY   +        + + H L LD+ V+ G
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMVRNG 366

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+  +F+ L+ ++  + +  + + +   M ++ + P A     ++ +L K+
Sbjct: 367 IHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 111/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN+II  LCK   +DKA E+   M    + P+ +TYNS++HG+C +    EA   
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT++++MD LCKN +  EA ++ D M + G++P+      I  YG L
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE------ITTYGTL 342

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ P+   ++I I A  N  ++D+A  +F  M  +G+
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGL 402

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V +  ++    +       +     M    + P
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TYNT+I+G C  G +D+A +L   M    + PN VTY++LI+G+C  +   +A  
Sbjct: 508 KPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALV 567

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       +I +  Y  
Sbjct: 568 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT------QIELSTYNI 621

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK     +A ++ Q+L    L     T+NI I AL    + D+A DLF+     G
Sbjct: 622 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 681

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
           + PN   +  +  + I +    ++ +L  SM+       + +L+ IV +LL + EI+
Sbjct: 682 LVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 738



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPNTVTY+T+I+G CK   ++ A  LF +M+   ++P+++TYN ++ G         A+ 
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ + + G Q ++ T+N+I+  LCKN+  D+A ++   +    ++ +A        +  
Sbjct: 603 LYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEA------RTFNI 656

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID L K+G+   A++L  + +  GL+PN  TY +    +     +++   LFL ME  G
Sbjct: 657 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              +  +   ++   +++ E ++    L  +D+++    AS  S+ +DLL
Sbjct: 717 CTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 766



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY+ ++D LCK G   +A+++F  M    + P + TY +L+ G+       E   
Sbjct: 298 EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+  G+  D   F++++       K+D+A  +   M Q G+ P+A      V YG 
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNA------VTYGA 411

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK G++++A    + +   GL P  + YN  IH LC   + ++A +L L+M  +G
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471

Query: 193 VAPNCVIFTTLMPSFIRKN---ETSKVIELL-RSMDKRNVMPYASIL 235
           +  N + F +++ S  ++    E+ K+ EL+ R   K NV+ Y +++
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 14/199 (7%)

Query: 45  ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
           + + P++ TY  LI   C A   +        ++ +G + D + F  ++  LC +++  +
Sbjct: 81  DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 140

Query: 105 ATRL-LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT---RAGLMP 160
           A  + L  M + G  P      N+ +Y  L+ GLC   + + A EL   +      G  P
Sbjct: 141 AMDIVLRRMTELGCIP------NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPP 194

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +VV+Y   I+    +   DKA+  + +M  +G+ P+ V + +++ +  +     K +E+L
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 221 RSMDKRNVMP----YASIL 235
            +M K  VMP    Y SIL
Sbjct: 255 NTMVKNGVMPDCMTYNSIL 273



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D+ T+ +++   C+  ++D     L  +I+ G R DA      +A+  L+ GLC   +  
Sbjct: 86  DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDA------IAFTPLLKGLCADKRTS 139

Query: 145 NARELS-QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF---LDMEVKGVAPNCVIF 200
           +A ++  + +T  G +PNV +YNI +  LC++ +  +A +L     D    G  P+ V +
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           TT++  F ++ ++ K       M  R ++P     + I+  L K +
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQ 245


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 133/234 (56%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ V YNT+ID LCK+   ++A   F +M D+ I PNVVTY+S++HGFC     NEA 
Sbjct: 207 CKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEAT 266

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M+ R +  + VTF +++D LCK   + EA R+ ++M + GV PDA+       Y 
Sbjct: 267 SLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAY------TYS 320

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C   ++  A++L   +   G  P+V  YNI I+  C   ++++A  L  +M  +
Sbjct: 321 ALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDR 380

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + P+ V ++TLM  F +        +L + M    ++P +   SI++D L K+
Sbjct: 381 DLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKH 434



 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/246 (34%), Positives = 134/246 (54%), Gaps = 10/246 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN +I+G CK   +++AK L  +M D ++ P+ VTY++L+ GFC A     A+ L
Sbjct: 349 PSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKL 408

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   GL  D +T+++++D LCK+  +DEA RLL  M +  + P      +I  Y  L
Sbjct: 409 FKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEP------HICIYNIL 462

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G+C  GKL+ AREL  +L   G+ P+VVTY + I  L  +   ++A ++F  M V G 
Sbjct: 463 IQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGC 522

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN   +   +  F+R  + S  + L+  M  R     +S   +++DL   +EI    I 
Sbjct: 523 LPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDLESNDEI----IS 578

Query: 254 QFNRQK 259
           +F R+ 
Sbjct: 579 RFMRRS 584



 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 142/268 (52%), Gaps = 29/268 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVT+  ++DGLCKEG + +A+ +F  M +  + P+  TY++L+ G+C  +  +EA+ L
Sbjct: 279 PNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKL 338

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
           F  M+ +G    V  +N++++  CK+R+++EA  LL  M    + PD          FC+
Sbjct: 339 FDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQ 398

Query: 125 I--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                + + Y  L+DGLCK G L  A  L +++  + + P++  
Sbjct: 399 AGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICI 458

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YNI I  +CN  +++ A +LF ++ VKG+ P+ V +T ++   +++  +++  E+ R M 
Sbjct: 459 YNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMV 518

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNSI 252
               +P +   ++ +   ++N    N++
Sbjct: 519 VNGCLPNSCTYNVAIQGFLRNGDPSNAV 546



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 10/254 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +A+ N+  G+   P  V +N ++  L K+        L  QM   NI PNV T   LI+ 
Sbjct: 54  VASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINC 113

Query: 61  FCYANDGNEAEYLFI---EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
            C++N  +   + F    +M   GLQ   VTF  +++ LC   K+ +A +L D + + G 
Sbjct: 114 LCHSNR-DHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGF 172

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
            P      +++ Y  +I GLCKIG   NA +L + +   G  P+VV YN  I +LC D +
Sbjct: 173 AP------SLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRR 226

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
            ++A   F +M  +G+ PN V +++++  F    + ++   L + M  RNVMP     +I
Sbjct: 227 ANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTI 286

Query: 238 IVDLLVKNEISLNS 251
           +VD L K  + L +
Sbjct: 287 LVDGLCKEGMILEA 300



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YN +I G+C  G ++ A+ELF  +  + I P+VVTY  +I G       NEA  
Sbjct: 453 EPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACE 512

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           +F +M+  G   +  T+NV +    +N     A RL++ M+  G   D+
Sbjct: 513 MFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADS 561



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 46/82 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY  +I GL KEG  ++A E+F +M      PN  TYN  I GF    D + A  
Sbjct: 488 QPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVR 547

Query: 73  LFIEMMDRGLQSDVVTFNVIMD 94
           L  EM+ RG  +D  TF +++D
Sbjct: 548 LIEEMVGRGFSADSSTFQMLLD 569


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y T+I G  K G V    +LF +MK + I P+ VTY S+IHG C A    EA  L
Sbjct: 355 PDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKL 414

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +GL+ D VT+  ++D  CK  +M EA  L + M++ G+ P      N+V Y  L
Sbjct: 415 FSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTP------NVVTYTAL 468

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G++  A EL   ++  GL PNV TYN  I+ LC    +++A  L  +M++ G 
Sbjct: 469 VDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGF 528

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+ + +TT+M ++ +  E +K  ELLR M  + + P     +++++
Sbjct: 529 FPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMN 575



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 132/233 (56%), Gaps = 7/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY ++I GLC+ G V +A++LF +M  + + P+ VTY +LI G+C A +  EA  L
Sbjct: 390 PDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSL 449

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+++GL  +VVT+  ++D LCK  ++D A  LL  M + G++P      N+  Y  L
Sbjct: 450 HNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQP------NVCTYNAL 503

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+G ++ A +L + +  AG  P+ +TY   + A C   +M KAH+L   M  KG+
Sbjct: 504 INGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGL 563

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKN 245
            P  V F  LM  F           L++ M  + +MP A+   S++    ++N
Sbjct: 564 QPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRN 616



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY  +IDG CK G + +A  L  QM ++ + PNVVTY +L+ G C   + + A  
Sbjct: 424 KPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANE 483

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM ++GLQ +V T+N +++ LCK   +++A +L++ M   G  PD       + Y  
Sbjct: 484 LLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDT------ITYTT 537

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D  CK+G++  A EL + +   GL P +VT+N+ ++  C    ++    L   M  KG
Sbjct: 538 IMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKG 597

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + PN   F +LM  +  +N     IE+ + M  + V+P  +  +I++
Sbjct: 598 IMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILI 644



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NTV+YN I+  LC+ G V +A  L +QM+     P+VV+Y+ ++ G+C      +   L 
Sbjct: 251 NTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLM 310

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            E+  +GL+ +  T+N I+  LCK  ++ EA ++L +M    + PD       V Y  LI
Sbjct: 311 EELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDN------VVYTTLI 364

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G  K G +    +L   + R  ++P+ VTY   IH LC   ++ +A  LF +M  KG+ 
Sbjct: 365 SGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLK 424

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+ V +T L+  + +  E  +   L   M ++ + P     + +VD L K
Sbjct: 425 PDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCK 474



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 6/179 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T+TY TI+D  CK G + KA EL   M D+ + P +VT+N L++GFC +    + E L
Sbjct: 530 PDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERL 589

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+D+G+  +  TFN +M + C    M     +   M   GV PD         Y  L
Sbjct: 590 IKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDT------NTYNIL 643

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           I G CK   +K A  L + +   G      +YN  I      ++ ++A  LF +M   G
Sbjct: 644 IKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+N +++G C  G ++  + L   M D+ I PN  T+NSL+  +C  N+      
Sbjct: 564 QPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIE 623

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M  +G+  D  T+N+++   CK R M EA  L   M++ G        +   +Y  
Sbjct: 624 IYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGF------SLTAASYNS 677

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           LI G  K  K + AR+L + +   G +     Y+I +
Sbjct: 678 LIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFV 714



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 11/157 (7%)

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA-FCEINIVAYGCLIDGLCKIGKLKN 145
           + F+V    L +   + EA +L D ++  GV      C + +       DG+      + 
Sbjct: 182 LVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGI------RT 235

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           A  + +  +  G+  N V+YNI +H LC   ++ +AH L + ME +G  P+ V ++ ++ 
Sbjct: 236 AFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVD 295

Query: 206 SFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
            + +  +  KV++L+  + ++ + P    Y SI+S +
Sbjct: 296 GYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFL 332



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+T TYN +I G CK   + +A  L  +M ++  +    +YNSLI GF       
Sbjct: 632 GVV--PDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFE 689

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMD 94
           EA  LF EM   G  ++   +++ +D
Sbjct: 690 EARKLFEEMRTHGFIAEKEIYDIFVD 715


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ VTYNTIID LCK+  V+ A E   +M D  I PNV TYN ++HGFC     NEA 
Sbjct: 224 CKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEAT 283

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ R +  D VT  +++D LCK   + EA  + + M + GV P      NI  Y 
Sbjct: 284 RLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEP------NISTYN 337

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C    +  A+++ + + R G  P V +YNI I+  C   +MD+A  L  +M  K
Sbjct: 338 ALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHK 397

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + P+ V ++TLM    +     + + + + M    ++P     SI++D   K+
Sbjct: 398 ALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKH 451



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 6/235 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVT   ++DGLCKEG V +A+ +F  M ++ + PN+ TYN+L+ G+C     NEA+ +
Sbjct: 296 PDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKV 355

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G    V ++N++++  CK+R+MDEA  LL  M    + PD       V Y  L
Sbjct: 356 FEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDT------VTYSTL 409

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC+ G+ K A  + + +   GL+PN+VTY+I +   C    +D+A  L   M+ K +
Sbjct: 410 MQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKL 469

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            PN V  T L+       +     EL   +    + P     ++++  L+K  +S
Sbjct: 470 EPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLS 524



 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 133/246 (54%), Gaps = 10/246 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   +YN +I+G CK   +D+AK L  +M  + +NP+ VTY++L+ G C      EA 
Sbjct: 364 CAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEAL 423

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM   GL  ++VT+++++D  CK+  +DEA +LL  M +  + P      NIV + 
Sbjct: 424 NIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEP------NIVHHT 477

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G+   GKL+ A+EL   L   G+ P + TY + I  L  +   D+A+DLF  ME  
Sbjct: 478 ILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDD 537

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  PN   +  ++  F++  ++S  I L+  M  +      S   +++DL  ++EI    
Sbjct: 538 GFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLDLESQDEI---- 593

Query: 252 IPQFNR 257
           I QF R
Sbjct: 594 ISQFMR 599



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 118/216 (54%), Gaps = 9/216 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +   P   T+N +I+GLC EG + +A ELF +M      PNV++YN++I+G C   + 
Sbjct: 150 FKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNT 209

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A  +F +M   G + DVVT+N I+D LCK+R +++A   L  M+  G+ P      N+
Sbjct: 210 SMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPP------NV 263

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y C++ G C +G+L  A  L + +    +MP+ VT  I +  LC +  + +A  +F  
Sbjct: 264 FTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFET 323

Query: 188 MEVKGVAPNCVIFTTLMPSFIRK---NETSKVIELL 220
           M  KGV PN   +  LM  +  +   NE  KV E++
Sbjct: 324 MTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIM 359



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   +   +    K+        L  QM    +  NV + N LI+  C  N  + A  
Sbjct: 85  RPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVS 144

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M   G+     TFN +++ LC   K+ EA  L + M++ G  P      N+++Y  
Sbjct: 145 ILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEP------NVISYNT 198

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCK G    A ++ + + + G  P+VVTYN  I +LC D  ++ A +   +M  +G
Sbjct: 199 IINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRG 258

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN   +  ++  F    + ++   L + M  R+VMP    L+I+VD L K
Sbjct: 259 IPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCK 310



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 6/199 (3%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A   F +M   N  P+V  +   +  F      +    L  +M   G+  +V + NV
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNV 128

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++ LC+   +D A  +L  M + G+ P A        +  LI+GLC  GK+K A EL  
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTA------STFNALINGLCNEGKIKEAVELFN 182

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            + R G  PNV++YN  I+ LC       A D+F  ME  G  P+ V + T++ S  +  
Sbjct: 183 EMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDR 242

Query: 212 ETSKVIELLRSMDKRNVMP 230
             +  +E L  M  R + P
Sbjct: 243 LVNDAMEFLSEMLDRGIPP 261



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 10/192 (5%)

Query: 60  GFCYANDGN----EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           GF   N  N    +A   F  M+    +  V  F   +    K ++      L + M   
Sbjct: 58  GFVSNNSTNISIDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLF 117

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           GV        N+ +   LI+ LC++  +  A  +   + + G+ P   T+N  I+ LCN+
Sbjct: 118 GVTH------NVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNE 171

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            ++ +A +LF +M  +G  PN + + T++    +   TS  +++ + M++    P     
Sbjct: 172 GKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTY 231

Query: 236 SIIVDLLVKNEI 247
           + I+D L K+ +
Sbjct: 232 NTIIDSLCKDRL 243


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TY+++IDGLCK G V  A+E+F +M    I PNVVTYNSLIHGFC  N  + A 
Sbjct: 248 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 307

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM   G   D++T+N ++D LCK  +  EA RL       G     FC  +++ Y 
Sbjct: 308 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLF------GDMKAKFCNPDVITYS 361

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           CLI G CK+ ++  AR L   + +  ++P+VVT++  +   CN   +D A  L  +M   
Sbjct: 362 CLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVAS 421

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +P+   +T+L+  F +     +   +L+ M KR   P     + ++D   +
Sbjct: 422 DCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 474



 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I+G CK   V +A  L  +MK+  + PNVVTY+++IHGFC     + A  L
Sbjct: 40  PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 99

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M++ G   ++VT+N ++  LC+N  MDEA  LLD M + G++PD F      +Y  L
Sbjct: 100 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKF------SYDTL 153

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK GK+  A ++ +  +     P+VV Y+  I  LC   ++D+A  LF  M     
Sbjct: 154 MAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSC 213

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V FT LM    + +   +  ++L +M+ RN  P     S ++D L K     ++  
Sbjct: 214 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQE 273

Query: 254 QFNR 257
            F R
Sbjct: 274 VFKR 277



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VT+  ++DGLCK   + +A+++   M+D N  PNV+TY+SLI G C      +A+
Sbjct: 213 CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQ 272

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M+ RG++ +VVT+N ++   C    +D A  L++ M   G  PD      I+ Y 
Sbjct: 273 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPD------IITYN 326

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK G+   A  L   +      P+V+TY+  I   C  E++D A  LF DM  +
Sbjct: 327 TLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ 386

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V P+ V F+TL+  +           LL  M   +  P     + +VD   K
Sbjct: 387 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 439



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 127/241 (52%), Gaps = 8/241 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  +P+  +Y+T++ GLCK G +D A ++F    + +  P+VV Y++LI G C   
Sbjct: 139 RERGL--QPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTG 196

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EA  LF +M +   + DVVTF  +MD LCK  ++ EA ++L+ M       D  C  
Sbjct: 197 RLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM------EDRNCTP 250

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N++ Y  LIDGLCK G++++A+E+ + +   G+ PNVVTYN  IH  C    +D A  L 
Sbjct: 251 NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLM 310

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M   G  P+ + + TL+    +     +   L   M  +   P     S ++    K 
Sbjct: 311 EEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKL 370

Query: 246 E 246
           E
Sbjct: 371 E 371



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y+T+I GLCK G +D+A +LF +M++ +  P+VVT+ +L+ G C  +   EA+
Sbjct: 178 CPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ 237

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M DR    +V+T++ ++D LCK  ++ +A  +   MI  G+ P      N+V Y 
Sbjct: 238 QVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEP------NVVTYN 291

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C    + +A  L + +T  G +P+++TYN  I  LC   +  +A+ LF DM+ K
Sbjct: 292 SLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAK 351

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              P+ + ++ L+  F +         L   M K+ V+P     S +V+
Sbjct: 352 FCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVE 400



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT++T+++G C  G VD A+ L  +M   + +P+V TY SL+ GFC      EA  +
Sbjct: 390 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 449

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  RG Q +VVT+  ++D  C+  K   A +LL+ M+  GV+P      N++ Y  L
Sbjct: 450 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQP------NVITYRSL 503

Query: 134 IDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           I G C  G L+ AR++ + L R      ++  Y + +  LC   +M  A +L   ++  G
Sbjct: 504 IGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSG 563

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD-KRNVMPYASILSIIVDLLVK 244
             P   I+  L+    +  E  K +E+L  M   R   P A     ++  L +
Sbjct: 564 TPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAR 616



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 107/201 (53%), Gaps = 6/201 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TY +++DG CK G + +A+ +  +M      PNVVTY +LI  FC A     A 
Sbjct: 423 CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAY 482

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+  G+Q +V+T+  ++   C    ++EA ++L+ + +     D  C+ ++ AY 
Sbjct: 483 KLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLER-----DENCKADMFAYR 537

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV- 190
            ++DGLC+ G++  A EL +++ ++G  P    Y   I  LC  +++ KA ++  +M + 
Sbjct: 538 VMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLS 597

Query: 191 KGVAPNCVIFTTLMPSFIRKN 211
           +   PN   +  ++    R+ 
Sbjct: 598 RKSRPNAEAYEAVIQELAREG 618


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TY+++IDGLCK G V  A+E+F +M    I PNVVTYNSLIHGFC  N  + A 
Sbjct: 367 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 426

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM   G   D++T+N ++D LCK  +  EA RL       G     FC  +++ Y 
Sbjct: 427 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLF------GDMKAKFCNPDVITYS 480

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           CLI G CK+ ++  AR L   + +  ++P+VVT++  +   CN   +D A  L  +M   
Sbjct: 481 CLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVAS 540

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +P+   +T+L+  F +     +   +L+ M KR   P     + ++D   +
Sbjct: 541 DCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 593



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I+G CK   V +A  L  +MK+  + PNVVTY+++IHGFC     + A  L
Sbjct: 159 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 218

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M++ G   ++VT+N ++  LC+N  MDEA  LLD M + G++PD F      +Y  L
Sbjct: 219 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKF------SYDTL 272

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK GK+  A ++ +  +     P+VV Y+  I  LC   ++D+A  LF  M     
Sbjct: 273 MAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSC 332

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V FT LM    + +   +  ++L +M+ RN  P     S ++D L K     ++  
Sbjct: 333 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQE 392

Query: 254 QFNR 257
            F R
Sbjct: 393 VFKR 396



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 128/241 (53%), Gaps = 8/241 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  +P+  +Y+T++ GLCK G +D A ++F    + +  P+VV Y++LI G C A 
Sbjct: 258 RERGL--QPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAG 315

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EA  LF +M +   + DVVTF  +MD LCK  ++ EA ++L+ M       D  C  
Sbjct: 316 RLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM------EDRNCTP 369

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N++ Y  LIDGLCK G++++A+E+ + +   G+ PNVVTYN  IH  C    +D A  L 
Sbjct: 370 NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLM 429

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M   G  P+ + + TL+    +     +   L   M  +   P     S ++    K 
Sbjct: 430 EEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKL 489

Query: 246 E 246
           E
Sbjct: 490 E 490



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VT+  ++DGLCK   + +A+++   M+D N  PNV+TY+SLI G C      +A+
Sbjct: 332 CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQ 391

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M+ RG++ +VVT+N ++   C    +D A  L++ M   G  PD      I+ Y 
Sbjct: 392 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPD------IITYN 445

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK G+   A  L   +      P+V+TY+  I   C  E++D A  LF DM  +
Sbjct: 446 TLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ 505

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V P+ V F+TL+  +           LL  M   +  P     + +VD   K
Sbjct: 506 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 558



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 112/217 (51%), Gaps = 9/217 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +I GLCK G +DKA EL  +M++    P+   YN +IH  C A +  +A   
Sbjct: 57  PNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDY 116

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M     + +V+T+ +++D LCK  ++ EAT     M + G  P+ +       Y  L
Sbjct: 117 FRSME---CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEW------TYNVL 167

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK+ K+  A  L + +  +GL PNVVTY+  IH  C   ++D A+ LF  M   G 
Sbjct: 168 INGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGC 227

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V + TL+    R     +  ELL  M +R + P
Sbjct: 228 MPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQP 264



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y+T+I GLCK G +D+A +LF +M++ +  P+VVT+ +L+ G C  +   EA+
Sbjct: 297 CPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ 356

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M DR    +V+T++ ++D LCK  ++ +A  +   MI  G+ P      N+V Y 
Sbjct: 357 QVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEP------NVVTYN 410

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C    + +A  L + +T  G +P+++TYN  I  LC   +  +A+ LF DM+ K
Sbjct: 411 SLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAK 470

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              P+ + ++ L+  F +         L   M K+ V+P     S +V+
Sbjct: 471 FCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVE 519



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT++T+++G C  G VD A+ L  +M   + +P+V TY SL+ GFC      EA  +
Sbjct: 509 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 568

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  RG Q +VVT+  ++D  C+  K   A RLL+ M+  GV+P      N++ Y  L
Sbjct: 569 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQP------NVITYRSL 622

Query: 134 IDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           I G C  G L+ AR++ + L R      ++  Y + +  LC   +M  A +L   ++  G
Sbjct: 623 IGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSG 682

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD-KRNVMPYASILSIIVDLLVK 244
             P   I+  L+    +  E  K +E+L  M   R   P A     ++  L +
Sbjct: 683 TPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAR 735



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 9/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN + + L +   +D+   +        I PNV TY  +I G C + D ++A  L 
Sbjct: 23  NVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELL 82

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM + G   D   +N ++  LCK R   +A      M          CE N++ +  +I
Sbjct: 83  EEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM---------ECEKNVITWTIMI 133

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK  +L  A      + + G +PN  TYN+ I+  C   ++ +A+ L  +M+  G+A
Sbjct: 134 DGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLA 193

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           PN V ++T++  F R+ +     +L R M +   MP     + ++  L +N
Sbjct: 194 PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 244



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 107/201 (53%), Gaps = 6/201 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TY +++DG CK G + +A+ +  +M      PNVVTY +LI  FC A     A 
Sbjct: 542 CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAY 601

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+  G+Q +V+T+  ++   C    ++EA ++L+ + +     D  C+ ++ AY 
Sbjct: 602 RLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLER-----DENCKADMFAYR 656

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV- 190
            ++DGLC+ G++  A EL +++ ++G  P    Y   I  LC  +++ KA ++  +M + 
Sbjct: 657 VMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLS 716

Query: 191 KGVAPNCVIFTTLMPSFIRKN 211
           +   PN   +  ++    R+ 
Sbjct: 717 RKSRPNAEAYEAVIQELAREG 737



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 46/109 (42%)

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
           R    +  + G   NV TYN    AL    ++D+   +  +    G+ PN   +  ++  
Sbjct: 9   RFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQG 68

Query: 207 FIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
             +  +  K  ELL  M +   +P A+I + ++  L K   +  ++  F
Sbjct: 69  LCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYF 117


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 131/227 (57%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TV Y T+IDG CK G +  A +LF +M+ + I P+ + Y ++I G C      EA+ +
Sbjct: 78  PDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKV 137

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M  RG++ D VT+  ++D  CK+ +M++A  L + M+Q G+ P      N+V Y  L
Sbjct: 138 FNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP------NVVTYTAL 191

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            DGLCK+G++  A EL   +   GL  N+ TYN  ++ LC    + +A  L  +MEV G+
Sbjct: 192 ADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGM 251

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+ + FTTLM ++ +  E  K  ELLR M  R + P     +++++
Sbjct: 252 YPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMN 298



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 125/235 (53%), Gaps = 6/235 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+ F    +P+ VTY T+IDG CK G ++KA  L  QM    + PNVVTY +L  G C  
Sbjct: 139 NKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKL 198

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              + A  L  EM  +GLQ ++ T+N +++ LCK+  + +A +L++ M   G+ PD    
Sbjct: 199 GQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDT--- 255

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
              + +  L+D  CK G++  A EL + +   GL P V+T+N+ ++  C    ++    L
Sbjct: 256 ---ITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERL 312

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              M  KG+ PN   + +LM  +  +N      E+ + M  R VMP ++  +I++
Sbjct: 313 LAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILI 367



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN++++GLCK G + +A +L  +M+   + P+ +T+ +L+  +C   +  +A  L 
Sbjct: 219 NICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELL 278

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+DRGLQ  V+TFNV+M+  C +  +++  RLL  M++ G+ P      N   Y  L+
Sbjct: 279 REMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMP------NTTTYNSLM 332

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    ++   E+ + +   G+MP+  TYNI I   C    M +A  L  +M  KG  
Sbjct: 333 KQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFN 392

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
                + +++  F +K + S+  EL   M +  +   A I ++ VD+
Sbjct: 393 LTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDI 439



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 108/203 (53%), Gaps = 6/203 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           MK     P+VV+Y+++I+G+C   +  +   L  EM  +GL+ ++ T+N I+  LCK+ K
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +D+A R+L  MI  G+ PD       V Y  LIDG CK+G ++ A +L   + +  ++P+
Sbjct: 61  VDDAERVLREMINQGIVPDT------VVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPD 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
            + Y   I  LC   +M +A  +F  M  +GV P+ V +TTL+  + +  E  K   L  
Sbjct: 115 FIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHN 174

Query: 222 SMDKRNVMPYASILSIIVDLLVK 244
            M +  + P     + + D L K
Sbjct: 175 QMVQSGLTPNVVTYTALADGLCK 197



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 6/187 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T+T+ T++D  CK G + KA EL  +M D  + P V+T+N L++GFC +    + E L
Sbjct: 253 PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERL 312

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+++G+  +  T+N +M + C    M   T +   M   GV PD+        Y  L
Sbjct: 313 LAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDS------NTYNIL 366

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK   +K A  L + +   G      +YN  I      +++ +A +LF +M  +G+
Sbjct: 367 IKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGM 426

Query: 194 APNCVIF 200
           A +  I+
Sbjct: 427 AADAEIY 433



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  +T+N +++G C  G ++  + L   M ++ I PN  TYNSL+  +C  N+      
Sbjct: 287 QPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTE 346

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M  RG+  D  T+N+++   CK R M EA  L   M + G    A       +Y  
Sbjct: 347 IYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTA------SSYNS 400

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +I G  K  K+  AREL + + R G+  +   YN+ +     +  M+ A +L
Sbjct: 401 IIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALEL 452



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ TYN +I G CK   + +A  L  +M ++  N    +YNS+I GF      +EA  L
Sbjct: 358 PDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEAREL 417

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           F EM   G+ +D   +N+ +D       M+ A  L D  I+
Sbjct: 418 FEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIE 458


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/214 (37%), Positives = 130/214 (60%), Gaps = 6/214 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ ++Y T+I+G CK   +DKA  LF +M  +   P+  TYN+L++G C+     +A  L
Sbjct: 343 PDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIAL 402

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ RG   D+VT+++++D LCKNR ++EA  LL  +    + PD      I  Y  +
Sbjct: 403 FHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPD------IQVYNII 456

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG+C+ G+L+ AR+L  +L+  GL P+V TYNI IH LC    +++A+ LF++M+    
Sbjct: 457 IDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDC 516

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           +P+   + T+   F++ NET + I+LL  M  R 
Sbjct: 517 SPDGCTYNTIARGFLQNNETLRAIQLLEEMLARG 550



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ V Y +IID LCK+  V +A  LF QM  + I+P++ TY SL+H  C   +     
Sbjct: 201 CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVT 260

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M++  +  DVV F+ ++D LCK  K+ EA  ++D+MIQ GV PD      +V Y 
Sbjct: 261 TLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPD------VVTYT 314

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C   ++  A ++   + R G  P+V++Y   I+  C   ++DKA  LF +M  K
Sbjct: 315 TLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRK 374

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              P+   + TLM            I L   M  R  MP     SI++D L KN
Sbjct: 375 EWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKN 428



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 125/247 (50%), Gaps = 29/247 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+ T+I GLC EG + +A  LF +M DE   PNVVTY +LI+G C   + + A  
Sbjct: 132 QPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIR 191

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L   M     Q DVV +  I+D LCK+R++ EA  L   M+  G+ PD F          
Sbjct: 192 LLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALC 251

Query: 123 --CEI-----------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
             CE                  ++V +  ++D LCK GK+  A E+   + + G+ P+VV
Sbjct: 252 NLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVV 311

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   +   C   +MD+A  +F  M  KG AP+ + +TTL+  + + ++  K + L   M
Sbjct: 312 TYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEM 371

Query: 224 DKRNVMP 230
            ++  +P
Sbjct: 372 CRKEWIP 378



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+ V +  ++  + K         L  QM    + PNV T N LI+ 
Sbjct: 50  LSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINS 109

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+ N    A  +  +++  G Q D  TF  ++  LC   K+ EA  L D MI  G +P 
Sbjct: 110 FCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQP- 168

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V YG LI+GLCK+G    A  L +S+ +    P+VV Y   I +LC D Q+ +
Sbjct: 169 -----NVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTE 223

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF  M  +G++P+   +T+L+ +     E   V  LL  M    ++P   I S +VD
Sbjct: 224 AFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 283

Query: 241 LLVK 244
            L K
Sbjct: 284 ALCK 287



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           +V F  ++  + K +       L   M   GV P+ +  +NI     LI+  C + ++  
Sbjct: 65  IVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYT-LNI-----LINSFCHLNRVGF 118

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           A  +   + + G  P+  T+   I  LC + ++ +A  LF  M  +G  PN V + TL+ 
Sbjct: 119 AFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLIN 178

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              +   TS  I LLRSM++ N  P   I + I+D L K+
Sbjct: 179 GLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 218


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 137/234 (58%), Gaps = 6/234 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN ++YNT+I+G CK   +DKA  LF +M  + + PN VTYN+L+HG C+     +A  L
Sbjct: 345 PNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIAL 404

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+  G   D+ T+ +++D LCK   +DEA  LL  +    + PD      I  Y  +
Sbjct: 405 FHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPD------IQIYTIV 458

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG+C+ G+L+ AR++  +L+  GL PNV TY I I+ LC    +D+A+ LF++M+  G 
Sbjct: 459 IDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGC 518

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +P+   + T+    ++  E  + I+LL+ M  R      S  +++V++L  +++
Sbjct: 519 SPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKL 572



 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ V Y +IID LCK+  V +A  LF +M  + I+P++ TY SLIH  C   +     
Sbjct: 203 CQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVT 262

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M++  +  DVV F+ ++D LCK  K+ EA  ++D+MI  GV P      N+V Y 
Sbjct: 263 TLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEP------NVVTYN 316

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C   ++  A ++  ++   G  PNV++YN  I+  C  ++MDKA  LF +M  K
Sbjct: 317 ALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQK 376

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + PN V + TLM            I L   M     +P  +   I++D L K
Sbjct: 377 ELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 429



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+ T+I GLC EG +  A  LF +M  E   PNVVTY +LI+G C   + N A  
Sbjct: 134 QPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIR 193

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M     Q DVV +  I+D LCK+R++ EA  L   M+  G+ PD F       Y  
Sbjct: 194 LLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIF------TYTS 247

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC + + K+   L   +  + +MP+VV ++  + ALC + ++ +AHD+   M ++G
Sbjct: 248 LIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRG 307

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V PN V +  LM     ++E  + +++  +M      P
Sbjct: 308 VEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAP 345



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 123/244 (50%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+TV +N ++  + K         L  QM    I P+V T N LI+ 
Sbjct: 52  LSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINS 111

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+ N    A  +  +++  GLQ D  TF  ++  LC   K+ +A  L D MI  G +P 
Sbjct: 112 FCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQP- 170

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V YG LI+GLCK+G    A  L +S+ +    P+VV Y   I +LC D Q+ +
Sbjct: 171 -----NVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 225

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF  M  +G++P+   +T+L+ S     E   V  LL  M    +MP   I S +VD
Sbjct: 226 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 285

Query: 241 LLVK 244
            L K
Sbjct: 286 ALCK 289



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 6/182 (3%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           N  ++A   F  M+        V FN ++  + K ++      L + M   G+ PD +  
Sbjct: 46  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVY-T 104

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +NI     LI+  C + +   A  +   + + GL P+  T+   I  LC + ++  A  L
Sbjct: 105 LNI-----LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHL 159

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M  +G  PN V + TL+    +   T+  I LLRSM++ N  P   + + I+D L K
Sbjct: 160 FDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 219

Query: 245 NE 246
           + 
Sbjct: 220 DR 221



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY  +I+GLC+ G +D+A +LF++M     +P+  TYN++  G     +   A  
Sbjct: 484 RPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQ 543

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
           L  EM+ RG  +DV T  ++++ LC + K+D++ +
Sbjct: 544 LLQEMLARGFSADVSTTTLLVEMLCDD-KLDQSVK 577


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 133/231 (57%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ ++Y T+I+G CK   +DKA  LF +M  + + P+ VTYN+LIHG C+     +A 
Sbjct: 330 CVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAI 389

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G   D+VT+ ++ D LCKN ++ EA  LL ++    + PD      I  Y 
Sbjct: 390 ALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPD------IHIYS 443

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DG+C+ G+L+ AR+L   L+  GL P+V TY I I+ LC    + +A  LF +M+  
Sbjct: 444 IVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDEN 503

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G +PN   +  +   F+R NET + I+L + M  R      S  +++V++L
Sbjct: 504 GCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEML 554



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 134/258 (51%), Gaps = 29/258 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P  V Y+TIID LCK+  + +A  LF  M  + I+PN  TY+SLIHG C      EA 
Sbjct: 190 CRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAI 249

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            LF  M+ R +  D +TFN ++D LCK   + +A  ++D+MIQ  ++PD           
Sbjct: 250 RLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGH 309

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C  ++++Y  LI+G CKI  +  A  L + +++ GL+P+ 
Sbjct: 310 CLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDT 369

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTYN  IH LC+  ++  A  LF +M V G  P+ V +  L     + +  ++ + LL+ 
Sbjct: 370 VTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKV 429

Query: 223 MDKRNVMPYASILSIIVD 240
           ++  N+ P   I SI++D
Sbjct: 430 IEGTNLDPDIHIYSIVMD 447



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 117/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+ T+I GLC EG + +A +LF +M  E   P+V+TY +LI+G C   + + A  
Sbjct: 121 QPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIR 180

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               M  R  +  VV ++ I+D LCK+R++ EA  L   M+  G+ P+ F       Y  
Sbjct: 181 FLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNF------TYSS 234

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC +G  K A  L  ++    +MP+ +T+N  + ALC +  + KAH +   M    
Sbjct: 235 LIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSD 294

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+ V + +LM     ++E  K + +  +M ++  +P
Sbjct: 295 LKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVP 332



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   +   P+ V ++ ++  + +         L+ QM    I  N  T N LI+ FC+ 
Sbjct: 43  NRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHL 102

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           N    A  +  +++  G Q    TF  ++  LC   K+ EA +L D M   G +PD    
Sbjct: 103 NRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPD---- 158

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ YG LI+GLCK+G    A    +S+ +    P VV Y+  I +LC D Q+ +A  L
Sbjct: 159 --VLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSL 216

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F DM  KG++PN   +++L+          + I L  +M  R +MP     + +VD L K
Sbjct: 217 FSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCK 276



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 6/192 (3%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           N  ++A  LF  M+       +V F+ ++  + + +       L   M   G+ P     
Sbjct: 33  NTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGI-PHNTYT 91

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +NI     LI+  C + +L  A  +   + + G  P+  T+   I  LC + ++ +A  L
Sbjct: 92  LNI-----LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQL 146

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M  +G  P+ + + TL+    +   TS  I  LRSM++RN  P   + S I+D L K
Sbjct: 147 FDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCK 206

Query: 245 NEISLNSIPQFN 256
           +     ++  F+
Sbjct: 207 DRQLTEALSLFS 218



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 59/112 (52%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G    P+   Y+ ++DG+C+ G ++ A++LF ++  + ++P+V TY  +I+G C      
Sbjct: 432 GTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLA 491

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           EA  LF EM + G   +  T+N+I     +N +   A +L   M+  G   D
Sbjct: 492 EASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSID 543


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 137/234 (58%), Gaps = 9/234 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V++N +I+GLCKE  VD+A+ L   M+ +  +PN +++N+LI G C A    +A 
Sbjct: 359 CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAM 418

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNR---KMDEATRLLDLMIQGGVRPDAFCEINIV 128
             F EM+ RG++  VVT+N+++D LCK R   ++ EA  L D MI+ G  PD      +V
Sbjct: 419 TTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPD------VV 472

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LIDGL K GKL +AR L  ++   G +PNV TYN  I  LC  +++D+A +LF+ M
Sbjct: 473 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAM 532

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             KG  P+ + + T++ +  ++    K + L     +  V+P + +   ++D L
Sbjct: 533 VEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGL 586



 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 136/232 (58%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKE-GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           PN +TY+T+I GLC+E   ++ A++L  +M      P++V+YN+LIHG       +EA  
Sbjct: 220 PNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALK 279

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  ++ +G + +V T+N+++D L K  +++EA  L   +++ G+ PDA      + Y  
Sbjct: 280 LFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDA------ITYTV 333

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            IDGLCK G++++A  + + +   G +P+VV++N  I+ LC ++++D+A  L   ME KG
Sbjct: 334 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 393

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +PN + F TL+    R  +  K +   + M KR V P     +I+VD L K
Sbjct: 394 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 445



 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 135/245 (55%), Gaps = 12/245 (4%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           +G R+ G    PN +TYN ++ GLC  G +  A+ L+ +M     +P+VVTYN+L+HGFC
Sbjct: 74  DGMRKHGFW--PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                +EA  +F   + RG   DVVT+N +++  CK  K+DEA R+L  M+   + PD  
Sbjct: 132 KVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPD-- 189

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND-EQMDKA 181
               +V Y  L++GLCK G++  AR L   +   G  PNV+TY+  I  LC +  +++ A
Sbjct: 190 ----VVTYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRRLESA 242

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             L   M + G  P+ V +  L+    R+   S+ ++L  S+ ++   P     +I++D 
Sbjct: 243 RQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDG 302

Query: 242 LVKNE 246
           L+K +
Sbjct: 303 LLKED 307



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 125/218 (57%), Gaps = 10/218 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN +I+G CK   +D+A+ +  +M  E++ P+VVTYNSL++G C     +EA  L
Sbjct: 153 PDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARML 212

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +   D+G   +V+T++ ++  LC+  R+++ A +LL+ M+  G +PD      IV+Y  
Sbjct: 213 IV---DKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPD------IVSYNA 263

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GL +   +  A +L  S+ R G  P V TYNI I  L  ++++++A +LF  +   G
Sbjct: 264 LIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHG 323

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+ + +T  +    +       + +L+ MD++  +P
Sbjct: 324 LEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVP 361



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 109/193 (56%), Gaps = 9/193 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T+N  I GLC+   +  A+ +F  M+     PN +TYN+L+ G C     ++A+ L+  M
Sbjct: 52  TFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERM 111

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +  G   DVVT+N ++   CK  K+DEA ++ D  ++ G  PD      +V Y  LI+G 
Sbjct: 112 IKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPD------VVTYNALINGF 165

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK  KL  A+ + Q +    L+P+VVTYN  ++ LC + ++D+A  L +D   KG +PN 
Sbjct: 166 CKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNV 222

Query: 198 VIFTTLMPSFIRK 210
           + ++TL+    R+
Sbjct: 223 ITYSTLISGLCRE 235



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 9/247 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY   IDGLCK G V+ A  +   M ++   P+VV++N++I+G C     +EAE 
Sbjct: 325 EPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEV 384

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M  +G   + ++FN ++   C+  K  +A      M++ GV+P       +V Y  
Sbjct: 385 LLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKP------TVVTYNI 438

Query: 133 LIDGLCKI---GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           L+DGLCK    G++K A  L  ++   G +P+VVTY+  I  L    ++D A  L   ME
Sbjct: 439 LVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAME 498

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
            KG  PN   + +L+      ++  + +EL  +M ++  +P       I+  L K E+  
Sbjct: 499 AKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVD 558

Query: 250 NSIPQFN 256
            ++  F+
Sbjct: 559 KALALFD 565



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 125/266 (46%), Gaps = 36/266 (13%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ V+YN +I GL +E  V +A +LF  +  +   P V TYN LI G    +  NEA 
Sbjct: 254 CKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAF 313

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            LF  ++  GL+ D +T+ V +D LCK  ++++A  +L  M + G  PD           
Sbjct: 314 ELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGL 373

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C  N +++  LI G C+ GK K A    + + + G+ P V
Sbjct: 374 CKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTV 433

Query: 163 VTYNITIHALCNDEQ---MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           VTYNI +  LC   Q   + +A  LF  M  KG  P+ V ++ L+    +  +      L
Sbjct: 434 VTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRL 493

Query: 220 LRSMDKRNVMP----YASILSIIVDL 241
           L +M+ +  +P    Y S++S +  L
Sbjct: 494 LGAMEAKGCIPNVYTYNSLISGLCGL 519



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 12/226 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T   ++  L K G ++KA     Q+  + +  ++ T+N  I G C A+   +A+ +
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQTV 72

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G   + +T+N ++  LC   +M +A  L + MI+ G  PD      +V Y  L
Sbjct: 73  FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPD------VVTYNTL 126

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK+GKL  A ++     + G +P+VVTYN  I+  C  +++D+A  +   M  + +
Sbjct: 127 LHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESL 186

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKR---NVMPYASILS 236
            P+ V + +L+    +     +   L+  +DK    NV+ Y++++S
Sbjct: 187 VPDVVTYNSLVNGLCKNGRVDEARMLI--VDKGFSPNVITYSTLIS 230



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 6/138 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+ +IDGL K G +D A+ L   M+ +   PNV TYNSLI G C  +  +EA  L
Sbjct: 469 PDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALEL 528

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+ M+++G   D +T+  I+  LCK   +D+A  L D  ++ GV P +        Y  L
Sbjct: 529 FVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSG------MYFSL 582

Query: 134 IDGLCKIGKLKNARELSQ 151
           IDGLC + ++  A +L Q
Sbjct: 583 IDGLCAVARVDEALKLLQ 600



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TYN++I GLC    VD+A ELF+ M ++   P+ +TY ++I   C     ++A 
Sbjct: 502 CIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKAL 561

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
            LF   ++ G+      +  ++D LC   ++DEA +LL
Sbjct: 562 ALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 145/251 (57%), Gaps = 14/251 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YNTIIDGLCK+  V++A + + +M    I P+V+TY++LI GFC A     A  
Sbjct: 269 RPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFS 328

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  + +  DV T+ +++D LCK  K+ EA  LL +M + GV+P      N+V Y  
Sbjct: 329 LLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKP------NVVTYST 382

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C +G++ NA+++  ++ +  + P+V +YNI I+ LC  + +D+A +L  +M  K 
Sbjct: 383 LMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKN 442

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVKNEIS 248
           V PN V + +L+    +    +  ++L++ +  R    +V+ Y S+L    D L KN+  
Sbjct: 443 VVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLL----DGLCKNQNL 498

Query: 249 LNSIPQFNRQK 259
             +I  F + K
Sbjct: 499 DKAIALFMKMK 509



 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 123/218 (56%), Gaps = 6/218 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +I+GLCK   VD+A  L  +M  +N+ PN VTYNSLI G C +     A  L
Sbjct: 410 PSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDL 469

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+  RG  +DV+T+  ++D LCKN+ +D+A  L   M + G++P+ +       Y  L
Sbjct: 470 MKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKY------TYTAL 523

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  +LKNA++L Q +   G   +V TYN+ I  LC +  +D+A  +   ME  G 
Sbjct: 524 IDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGC 583

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
            P+ V F  ++ S   K+E  K  +LL  M  + ++ +
Sbjct: 584 IPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLHF 621



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY+T++DG C  G V  AK++F  M    +NP+V +YN +I+G C     +EA  
Sbjct: 374 KPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMN 433

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+ + +  + VT+N ++D LCK+ ++  A  L+  +   G   D      ++ Y  
Sbjct: 434 LLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPAD------VITYTS 487

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGLCK   L  A  L   +   G+ PN  TY   I  LC   ++  A  LF  + VKG
Sbjct: 488 LLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKG 547

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              +   +  ++    ++    + + +   M+    +P A    II+  L + +
Sbjct: 548 CCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKD 601



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNT+   T++ GLC +G V K+     ++  +    N V+Y +L++G C   +   A  
Sbjct: 199 QPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIK 258

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   + DR  + DVV +N I+D LCK++ ++EA      M   G+ PD      ++ Y  
Sbjct: 259 LLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPD------VITYST 312

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C  G+L  A  L   +T   + P+V TY I I ALC + ++ +A +L   M  +G
Sbjct: 313 LICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEG 372

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           V PN V ++TLM  +    E     ++  +M +  V P     +I+++ L K +
Sbjct: 373 VKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGK 426



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +  I+  L K      A  L  QM+ + I P++VT + LI+ FC+      +  +
Sbjct: 130 PSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSV 189

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  G Q + +    +M  LC   ++ ++    D ++  G       ++N V+YG L
Sbjct: 190 LGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGF------QMNQVSYGTL 243

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCKIG+ + A +L + +      P+VV YN  I  LC D+ +++A+D + +M  +G+
Sbjct: 244 LNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGI 303

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ + ++TL+  F    +      LL  M  +N+ P     +I++D L K
Sbjct: 304 FPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCK 354



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 2/112 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  +PN  TY  +IDGLCK   +  A++LF  +  +    +V TYN +I G C   
Sbjct: 509 KERGI--QPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEG 566

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
             +EA  +  +M D G   D VTF +I+  L +  + D+A +LL  MI  G+
Sbjct: 567 MLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
            ++ F  I+  L K +    A  L   M   G+ PD      +V    LI+  C +G++ 
Sbjct: 131 SIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPD------LVTLSILINCFCHLGQMA 184

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            +  +   + + G  PN +     +  LC   ++ K+      +  +G   N V + TL+
Sbjct: 185 FSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLL 244

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
               +  ET   I+LLR ++ R+  P   + + I+D L K+++
Sbjct: 245 NGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKL 287



 Score = 38.1 bits (87), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G++PN+VT +I I+ L +  QM  +  +   +   G  PN +  TTLM     K ET   
Sbjct: 6   GIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLM-----KGETRCA 60

Query: 217 IELLRSMDKRNVMP 230
           I+L R ++ R+  P
Sbjct: 61  IKLPRMIEDRSTRP 74


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 125/231 (54%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + YN II G C++   D A E   +M +  + P+V TYN LI G C A+  ++A  +
Sbjct: 224 PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEM 283

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+DRG+  D VTFN IMD LCK  K + A  LL +M +   RP      +   Y  L
Sbjct: 284 LHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRP------SCCTYNTL 337

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK   +  A++L      +G +P+VVTY+I    LC   ++D+A +L  +M  KG 
Sbjct: 338 ISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGC 397

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V + TL+    + ++T K  ELL S+     +P     +IIVD L K
Sbjct: 398 TPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCK 448



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 37/274 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+ + DGLCK G +D+A EL  +M  +   PN+VTYN+LI G C A+   +A  L
Sbjct: 364 PDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYEL 423

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
              ++  G   DVVT+ +I+D LCK  ++D+A ++++ M++ G  P              
Sbjct: 424 LESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCR 483

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             C  + +AY  L++G CK  + K A+++   +      P +  
Sbjct: 484 TGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDV 540

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  +   C + ++D+  ++F DM  +G  PN   +  +M    +  +  +    L SM 
Sbjct: 541 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMH 600

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258
               +P     +II+D L K      S P+  RQ
Sbjct: 601 SAGCVPDVVSYNIIIDGLFK-----ASKPKEARQ 629



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 120/233 (51%), Gaps = 9/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  I+DGLCKEG +DKA ++   M      P+V+TY +L+ G C     +EA ++
Sbjct: 434 PDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHI 493

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +   +D + +  +++  CK+ +  EA +++D     G+R   + ++    Y  L
Sbjct: 494 FKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD-----GIRGTPYIDV----YNAL 544

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK G+L     + + +   G +PN+ TYNI +  LC   ++D+A      M   G 
Sbjct: 545 MDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 604

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+ V +  ++    + ++  +  ++L  M +  + P A   + ++    K E
Sbjct: 605 VPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEE 657



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TYN ++DGLCK G VD+A      M      P+VV+YN +I G   A+   EA 
Sbjct: 569 CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEAR 628

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M+  G+  D VT+N +M + CK  + D+A  +L  MI+ GV PD       V Y 
Sbjct: 629 QVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDN------VTYN 682

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            LI GL +  +L +A EL   + R G ++    TYN  I  LC +  + +A  L   M  
Sbjct: 683 TLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTG 742

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK-RNVMPYASIL 235
            GV  N V +   +    ++    +   LL  MD  R+ + Y +++
Sbjct: 743 HGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVI 788



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 7/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+   P    YN ++DG CKEG +D+   +F  M      PN+ TYN ++ G C     +
Sbjct: 531 GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVD 590

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA      M   G   DVV++N+I+D L K  K  EA ++LD MIQ G+ PDA      V
Sbjct: 591 EAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDA------V 644

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+   CK  +  +A  + +++ +AG+ P+ VTYN  I  L    ++  A++L  +M
Sbjct: 645 TYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEM 704

Query: 189 EVKG-VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              G V   C  + T++    ++    + + L+  M    V       +I +D L K
Sbjct: 705 LRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCK 761



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 8/207 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
            TYNTIID LCKEG + +A  L   M    +  N VTYN  I   C     +EA  L  E
Sbjct: 715 TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE 774

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M       D V++  ++  LCK  ++D A++L   M    V     C I    +  LID 
Sbjct: 775 M---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREM----VAVKGLC-ITSHTFNLLIDA 826

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
             K  +L  A  L   + + G  P+V+TYN+ I  LC  +++DKA +LF +M V+G+  +
Sbjct: 827 FTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVAS 886

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSM 223
            V +T L+     +    + +++L  M
Sbjct: 887 SVSYTVLIYGLCGQGRGKEALQVLEEM 913



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 14/243 (5%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G+R F    K +T T N  +  L + G  D+   +F +M D    P+  TY+ +I   C 
Sbjct: 117 GDRGF----KHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQ 172

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
            N  ++A  +  +   RG + +V  + ++    CK  ++ +A  +     +    PDA  
Sbjct: 173 MNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIF----RNIPSPDA-- 226

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
               +AY  +I G C+      A E  + +    + P+V TYNI I  LC   + DKA +
Sbjct: 227 ----IAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASE 282

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +  +M  +GV P+ V F ++M    +  +  +   LL  M +RN  P     + ++  L 
Sbjct: 283 MLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLC 342

Query: 244 KNE 246
           K +
Sbjct: 343 KQQ 345



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 115/260 (44%), Gaps = 40/260 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT++   CKE   D A  +   M    ++P+ VTYN+LI G    N   +A  L
Sbjct: 641 PDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYEL 700

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             EM+  G + S   T+N I+D LCK   + +A  L+D M   GV      E N V Y  
Sbjct: 701 MHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGV------EANTVTYNI 754

Query: 133 LIDGLCKIGKLKNAREL----------------------SQSLTRA-----------GLM 159
            ID LCK G+L  A  L                      ++ L RA           GL 
Sbjct: 755 FIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLC 814

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
               T+N+ I A    +++D+A  L   M  +G +P+ + +  ++    + ++  K  EL
Sbjct: 815 ITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWEL 874

Query: 220 LRSMDKRNVMPYASILSIIV 239
              M  R ++  +   ++++
Sbjct: 875 FDEMAVRGIVASSVSYTVLI 894



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 83/209 (39%), Gaps = 33/209 (15%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-- 122
            D   A   F+   DRG +    T N  +  L +N   D    + + M+  G  PD++  
Sbjct: 104 KDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTY 163

Query: 123 -------CEIN--------------------IVAYGCLIDGLCKIGKLKNARELSQSLTR 155
                  C++N                    +  Y  L    CK G+LK+A E+ +++  
Sbjct: 164 HLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS 223

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
               P+ + YN  IH  C     D A +   +M  + VAP+   +  L+    + ++T K
Sbjct: 224 ----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDK 279

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLLVK 244
             E+L  M  R V P     + I+D L K
Sbjct: 280 ASEMLHEMVDRGVTPDTVTFNSIMDGLCK 308



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 39/74 (52%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TYN +I  LCK   VDKA ELF +M    I  + V+Y  LI+G C    G EA 
Sbjct: 848 CSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEAL 907

Query: 72  YLFIEMMDRGLQSD 85
            +  EM     + D
Sbjct: 908 QVLEEMASSDCEID 921


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 140/236 (59%), Gaps = 6/236 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V YNTIID +CK   V++A +LF +M  + I+P+VVTY++LI GFC     N
Sbjct: 218 GNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLN 277

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M+   ++ DV TFN++++  CK+ KM E   + D+M++ G++P      N V
Sbjct: 278 DAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP------NFV 331

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ +  ++ + G+ P++ +Y+I I+  C  ++ D+A +LF +M
Sbjct: 332 TYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM 391

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             K + P+ V +++L+    +    S  ++L+  M  R V P     + I+D L K
Sbjct: 392 HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCK 447



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 127/241 (52%), Gaps = 10/241 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y+ +I+G CK    D+A  LF +M  +NI P+VVTY+SLI G   +   + A  L
Sbjct: 363 PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQL 422

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M DRG+   + T+N I+D LCK  ++D+A  LL  +   G++P      N+  Y  L
Sbjct: 423 VDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQP------NMYTYSIL 476

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ GKL++AR++ + L   G   NV TY I I   C +   ++A  L   ME  G 
Sbjct: 477 IKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGC 536

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+   +  ++ S  +K+E     +LLR M  R V P      I +    K E  ++S P
Sbjct: 537 IPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPR----QIAIWFQKKKEYDVSSEP 592

Query: 254 Q 254
           +
Sbjct: 593 K 593



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + ++Y T+I GLCK G    A +L  ++    + PNVV YN++I   C     NEA  LF
Sbjct: 189 DQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLF 248

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +G+  DVVT++ ++   C   K+++A  L + MI   ++PD +       +  L+
Sbjct: 249 SEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVY------TFNILV 302

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +  CK GK+K  + +   + + G+ PN VTYN  +   C  ++++KA  +F  M   GV 
Sbjct: 303 NAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVN 362

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+   ++ ++  F +  +  + + L + M ++N++P     S ++D L K+
Sbjct: 363 PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKS 413



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 123/268 (45%), Gaps = 43/268 (16%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V  N +I+  C+ G +  A  +F ++      P+ +T+ +LI G C      +A +
Sbjct: 117 KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQA-F 175

Query: 73  LF--------------------------------IEMMDRG----LQSDVVTFNVIMDEL 96
           LF                                ++++ R     +Q +VV +N I+D +
Sbjct: 176 LFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSM 235

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK + ++EA  L   MI  G+ PD      +V Y  LI G C +GKL +A +L   +   
Sbjct: 236 CKVKLVNEAFDLFSEMISKGISPD------VVTYSALISGFCILGKLNDAIDLFNKMILE 289

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
            + P+V T+NI ++A C D +M +   +F  M  +G+ PN V + +LM  +    E +K 
Sbjct: 290 NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKA 349

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
             +  +M +  V P     SI+++   K
Sbjct: 350 KSIFNTMAQGGVNPDIQSYSIMINGFCK 377



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N I+  L K         L  +M+   I PN+V  N LI+ FC       A  +
Sbjct: 83  PPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSV 142

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +++  G   D +TF  ++  LC   ++ +A    D ++  G   D       ++YG L
Sbjct: 143 FAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQ------ISYGTL 196

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK+G+ + A +L Q +    + PNVV YN  I ++C  + +++A DLF +M  KG+
Sbjct: 197 IHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGI 256

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +P+ V ++ L+  F    + +  I+L   M   N+ P     +I+V+   K+
Sbjct: 257 SPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKD 308



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 60/107 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY+ +I GLC+ G ++ A+++F  +  +  N NV TY  +I GFC     NEA  
Sbjct: 467 QPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALA 526

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           L  +M D G   D  T+ +I+  L K  + D A +LL  MI  GVRP
Sbjct: 527 LLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 6/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  +PN VTY T+I  LCK   ++ A E+F QM D  I PNVVTYNSL+ G C     +
Sbjct: 180 GMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWS 239

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A +L  +MM RG+Q +V+TF  ++D   K  K+ EA  L  +MIQ  V PD F      
Sbjct: 240 DAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVF------ 293

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI+GLC  G+L  AR++   +   G  PN VTY   IH  C  ++++    +F +M
Sbjct: 294 TYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEM 353

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             KG+  N + +T L+  +          E+   M  R   P     ++++D L  N
Sbjct: 354 SQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYN 410



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+ +++ G C    ++ A  LF Q+      PNVVTY +LIH  C     N A  
Sbjct: 149 EPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVE 208

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M D G++ +VVT+N ++  LC+  +  +A  LL  M++ G++P      N++ +  
Sbjct: 209 IFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQP------NVITFTA 262

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K+GK+  A+EL + + +  + P+V TY   I+ LC   ++D+A  +F  ME  G
Sbjct: 263 LIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNG 322

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             PN V +TTL+  F +        ++   M ++ ++      ++++ 
Sbjct: 323 YYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQ 370



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 6/221 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I+GLC  G +D+A+++F  M+     PN VTY +LIHGFC +    +   +
Sbjct: 290 PDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKI 349

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  +GL ++ +T+ V++   C   + D A  + + M      PD      I  Y  L
Sbjct: 350 FYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPD------IRTYNVL 403

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLC  G ++ A  + + + +  +  N+VTY I I  +C   +++ A DLF  +  KG+
Sbjct: 404 LDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGM 463

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
            PN + +TT++  F R+    +   L + M +   +P  S+
Sbjct: 464 KPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNESV 504



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +  ++  + K    D    LF QM+   I+P + T N +++  C ++    A   
Sbjct: 80  PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCF 139

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM  G + D+VTF  ++   C   ++++A  L D ++  G RP      N+V Y  L
Sbjct: 140 LGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRP------NVVTYTTL 193

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LCK   L +A E+   +   G+ PNVVTYN  +  LC   +   A  L  DM  +G+
Sbjct: 194 IHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGI 253

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + FT L+ +F++  +  +  EL + M + +V P
Sbjct: 254 QPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYP 290



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 6/212 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           ++A +LF +M      P++V +  L+         +    LF +M   G+   + T N++
Sbjct: 64  NEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIV 123

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           M+ +C++ +   A+  L  M++ G  PD      +V +  L+ G C   ++++A  L   
Sbjct: 124 MNCVCRSSQPCRASCFLGKMMKLGFEPD------LVTFTSLLHGFCHWNRIEDALALFDQ 177

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G  PNVVTY   IH LC +  ++ A ++F  M   G+ PN V + +L+        
Sbjct: 178 IVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGR 237

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            S    LLR M KR + P     + ++D  VK
Sbjct: 238 WSDAAWLLRDMMKRGIQPNVITFTALIDAFVK 269



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN 50
           KPN +TY T+I G C+ GF+ +A  LF +MK++   PN
Sbjct: 464 KPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPN 501



 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 6/159 (3%)

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
           N + +EA  L   M+     P      +IV +  L+  + K+ +      L + +   G+
Sbjct: 60  NLQFNEALDLFTRMVHSRPLP------SIVDFTRLLSVIAKMKRFDVVISLFEQMQILGI 113

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P + T NI ++ +C   Q  +A      M   G  P+ V FT+L+  F   N     + 
Sbjct: 114 SPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALA 173

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           L   +      P     + ++  L KN    +++  FN+
Sbjct: 174 LFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQ 212


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 135/242 (55%), Gaps = 11/242 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCY 63
           EFG  C PN V+ NT++ GLC E  V++A EL   M ++   N  PNVVTYN++I G C 
Sbjct: 154 EFG--CMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCK 211

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           A   + AE +   M+D+G++ DVVT++ I+D LCK + +D A  +L  MI  GV+PD   
Sbjct: 212 AQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPD--- 268

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
              +V Y  +IDGLCK   +  A  + Q +   G+ P+VVTYN  I  LC  + +D+A  
Sbjct: 269 ---VVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADG 325

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +   M  K V P+   +  L+  ++   E  +V+  L  M  R + P     S+++D L 
Sbjct: 326 VLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLC 385

Query: 244 KN 245
           KN
Sbjct: 386 KN 387



 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 136/255 (53%), Gaps = 22/255 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNTIIDGLCK   VD+A+ +   M D+ +  +VVTY+++I G C A   + AE
Sbjct: 195 CTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAE 254

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+D+G++ DVVT+N I+D LCK + +D A  +L  MI  GV+PD      +V Y 
Sbjct: 255 GVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPD------VVTYN 308

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGLCK   +  A  + Q +    + P++ TYN  IH   +  +  +      +M  +
Sbjct: 309 TIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYAR 368

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI-------------- 237
           G+ P+ V ++ L+    +  + ++  ++   M ++ + P  +I  I              
Sbjct: 369 GLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADL 428

Query: 238 --IVDLLVKNEISLN 250
             ++DL+V N IS N
Sbjct: 429 TDLLDLMVANGISPN 443



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 126/232 (54%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  +ID LCK G VD A   F QM ++ + PN V +NSL++G C  +   +AE L
Sbjct: 477 PDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEEL 536

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM D+G++ +VV FN IM  LC   ++  A RL+D M + GVRP      N+++Y  L
Sbjct: 537 FFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRP------NVISYNTL 590

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C  G+   A +L   +   GL P++++Y+  +   C   ++D A+ LF +M  KGV
Sbjct: 591 IGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGV 650

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P  V ++T++         S+  EL  +M K          +II++ L K 
Sbjct: 651 TPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKT 702



 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 139/274 (50%), Gaps = 29/274 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VTY+TIIDGLCK   VD+A+ +   M D+ + P+VVTYN++I G C A   + AE 
Sbjct: 231 KLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEG 290

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------ 120
           +   M+D+G++ DVVT+N I+D LCK + +D A  +L  MI   V+PD            
Sbjct: 291 VLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYL 350

Query: 121 ---AFCEI--------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
               + E+              ++V Y  L+D LCK GK   AR++   + R G+ PNV 
Sbjct: 351 STGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVT 410

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            Y I +H       +    DL   M   G++PN  IF  ++ ++ +K    + + +   M
Sbjct: 411 IYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRM 470

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            +  + P      I++D L K     +++ +FN+
Sbjct: 471 SQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQ 504



 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 133/282 (47%), Gaps = 64/282 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNTIIDGLCK   VD+A  +   M D+++ P++ TYN LIHG+    +  E   
Sbjct: 301 KPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVR 360

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA--------------------------- 105
              EM  RGL  DVVT+++++D LCKN K  EA                           
Sbjct: 361 RLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYA 420

Query: 106 --------TRLLDLMIQGGVRPDAF------CEI-----------------------NIV 128
                   T LLDLM+  G+ P+ +      C                         ++V
Sbjct: 421 ARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVV 480

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            YG LID LCK+G++ +A      +   G+ PN V +N  ++ LC  ++ +KA +LF +M
Sbjct: 481 TYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEM 540

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             +GV PN V F T+M +   + +      L+ SM++  V P
Sbjct: 541 WDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRP 582



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 136/244 (55%), Gaps = 8/244 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ ++Y+T++ G CK G +D A  LF +M  + + P  VTY++++ G  +    +EA+ 
Sbjct: 616 KPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKE 675

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M+  G Q D+ T+N+I++ LCK   +DEA ++   +    +RP      NI+ +  
Sbjct: 676 LYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRP------NIITFTI 729

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID L K G+ K+A +L  S+   GL+PNVVTY I +  +  +  +D+  +LFL ME  G
Sbjct: 730 MIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSG 789

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS--LN 250
             P+ V+   ++ S + + E  +    L  +D+ N    AS  S+++ L  + E      
Sbjct: 790 CTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLFSREEYKNHAK 849

Query: 251 SIPQ 254
           S+P+
Sbjct: 850 SLPE 853



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V +NTI+  LC EG V  A+ L   M+   + PNV++YN+LI G C A   +EA  
Sbjct: 546 RPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQ 605

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+  GL+ D+++++ ++   CK  ++D A  L   M++ GV P A      V Y  
Sbjct: 606 LLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGA------VTYST 659

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GL    +   A+EL  ++ ++G   ++ TYNI ++ LC    +D+A  +F  +  K 
Sbjct: 660 ILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKD 719

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN + FT ++    +       ++L  S+    ++P
Sbjct: 720 LRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVP 757



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 116/252 (46%), Gaps = 41/252 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC----------- 62
           P+ VTY+ ++D LCK G   +A+++F  M  + I PNV  Y  L+HG+            
Sbjct: 372 PDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDL 431

Query: 63  ----------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                                 YA     +EA ++F  M   GL  DVVT+ +++D LCK
Sbjct: 432 LDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCK 491

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             ++D+A    + MI  GV P      N V +  L+ GLC + + + A EL   +   G+
Sbjct: 492 LGRVDDAVLKFNQMINDGVTP------NSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGV 545

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            PNVV +N  +  LCN+ Q+  A  L   ME  GV PN + + TL+        T +  +
Sbjct: 546 RPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQ 605

Query: 219 LLRSMDKRNVMP 230
           LL  M    + P
Sbjct: 606 LLDVMVSVGLKP 617



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 4/235 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-E 71
           +P+  TY+ +    C+ G ++     F  +       N V  N L++G C A   +EA +
Sbjct: 87  RPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMD 146

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M + G   +VV+ N ++  LC  ++++EA  LL  M + G      C  N+V Y 
Sbjct: 147 ILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDG---GGNCTPNVVTYN 203

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGLCK   +  A  + Q +   G+  +VVTY+  I  LC  + +D+A  +   M  K
Sbjct: 204 TIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDK 263

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           GV P+ V + T++    +     +   +L+ M  + V P     + I+D L K +
Sbjct: 264 GVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQ 318



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 16/189 (8%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR---KMDEATRLLDLMIQG---GVRPDA 121
           ++A  LF E++     + V  FN +++ + + R     + A  L + M +     VRPD 
Sbjct: 31  DDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPD- 89

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
            C  +I+  GC     C++G++++       + + G   N V  N  ++ LC+ +++D+A
Sbjct: 90  LCTYSILT-GCF----CRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEA 144

Query: 182 HDLFL-DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK---RNVMPYASILSI 237
            D+ L  M   G  PN V   TL+     +    + +ELL +M +    N  P     + 
Sbjct: 145 MDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNT 204

Query: 238 IVDLLVKNE 246
           I+D L K +
Sbjct: 205 IIDGLCKAQ 213


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 135/248 (54%), Gaps = 6/248 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G V +PN V YN I+DGLCK+G V +A++L+  +    I+P+V TY  LIHGFC      
Sbjct: 211 GQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWR 270

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           E   L  +M+DR +  +V T+N+++D LCK   + +A  + +LMI+ G RPD      +V
Sbjct: 271 EVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPD------LV 324

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  L+ G C    +  AR+L  +    G+ P+V +YNI I   C + ++D+A  LF  M
Sbjct: 325 TFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKM 384

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             K +APN V +++L+    +    S   EL  ++      P     +I++D L K ++ 
Sbjct: 385 NYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLV 444

Query: 249 LNSIPQFN 256
             +I  FN
Sbjct: 445 DKAIELFN 452



 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 6/242 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN +ID LCK+G + KA ++   M +    P++VT+N+L+ G+C  ND  EA  LF
Sbjct: 287 NVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLF 346

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
               + G+  DV ++N+++   CKN ++DEA  L + M    + P      NIV Y  LI
Sbjct: 347 DTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAP------NIVTYSSLI 400

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK G++  A EL  ++   G  PNV+TYNI + ALC  + +DKA +LF  M  +G+ 
Sbjct: 401 DGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLT 460

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
           PN   +  L+  + +     + + L   M +RN++P +   + ++D L K+    ++   
Sbjct: 461 PNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWEL 520

Query: 255 FN 256
           FN
Sbjct: 521 FN 522



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 6/194 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +I G CK   +D+A  LF +M  + + PN+VTY+SLI G C +   + A  L
Sbjct: 356 PDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWEL 415

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  + D G   +V+T+N+++D LCK + +D+A  L +LM + G+ P      N+ +Y  L
Sbjct: 416 FSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTP------NVSSYNIL 469

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK  ++  A  L + + R  L+P+ VTYN  I  LC   ++  A +LF  M   G 
Sbjct: 470 INGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGP 529

Query: 194 APNCVIFTTLMPSF 207
             + + +  L  +F
Sbjct: 530 PVDVITYNILFDAF 543



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +N I+  + K      A  L  QM    I P++VT + LI+ +C+      A  +
Sbjct: 76  PSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSV 135

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ RG Q + +T   IM  LC N ++ +A    D ++  G   D       V YG L
Sbjct: 136 LGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDE------VTYGTL 189

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCKIG  + A EL   +    + PNVV YN+ +  LC D  + +A DL+ D+  +G+
Sbjct: 190 INGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGI 249

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   +T L+  F    +  +V  LL  M  RNV       +I++D L K
Sbjct: 250 DPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCK 300



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 118/243 (48%), Gaps = 6/243 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N +T  TI+ GLC  G V KA E    +  +    + VTY +LI+G C      EA  L 
Sbjct: 147 NAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELL 206

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M  + ++ +VV +N+I+D LCK+  + EA  L   ++  G+ PD F       Y CLI
Sbjct: 207 HKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVF------TYTCLI 260

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C +G+ +    L   +    +  NV TYNI I ALC    + KAHD+   M  +G  
Sbjct: 261 HGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQR 320

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
           P+ V F TLM  +   N+  +  +L  +  +  + P     +I++    KN     ++  
Sbjct: 321 PDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSL 380

Query: 255 FNR 257
           FN+
Sbjct: 381 FNK 383



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 6/128 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            PN +TYN ++D LCK   VDKA ELF  M +  + PNV +YN LI+G+C +   +EA  
Sbjct: 425 SPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMN 484

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  R L  D VT+N ++D LCK+ ++  A  L ++M  GG        ++++ Y  
Sbjct: 485 LFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGP------PVDVITYNI 538

Query: 133 LIDGLCKI 140
           L D   KI
Sbjct: 539 LFDAFSKI 546



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 6/180 (3%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           ++A  LF  ++       VV FN+I+  + K +    A  L   M   G+ P      +I
Sbjct: 60  DDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITP------SI 113

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V    LI+  C +G +  A  +   + + G   N +T    +  LC + ++ KA +    
Sbjct: 114 VTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDS 173

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +  +G   + V + TL+    +   T +  ELL  M+ + V P   I ++IVD L K+ +
Sbjct: 174 VVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGL 233


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 141/270 (52%), Gaps = 33/270 (12%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           + G+V  PN  TY ++I G C  G ++ AKELF+ M  +   P+V++YN LI+G+C    
Sbjct: 300 QIGIV--PNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLK 357

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC--- 123
             EA  LF EM+  G+  DV T  V++  L    K+D+A  L  + I+    P   C   
Sbjct: 358 VEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRV-IKPYAMPKDLCICC 416

Query: 124 ---------------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                                      +++I  +GCLIDGLCK GKL+ A EL + L   
Sbjct: 417 IFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEE 476

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G+ P+ + Y+  IH  C   Q+DKA+ LF  ME  G +P+ + ++ LM  F   N+  KV
Sbjct: 477 GIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKV 536

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++LL  M +++V P   I +I+ D++ K+E
Sbjct: 537 VQLLHRMIEKDVWPDDGIYAIVEDMVCKDE 566



 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 138/257 (53%), Gaps = 22/257 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE------NINPNVVTYNSLIHGFCYAN 65
           C PN VTY T+I GLC  G ++ A +   +M ++      N  PNV++Y+ +I G C   
Sbjct: 192 CTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVG 251

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           +  EA  LF EM+D+G+Q +VVTF+V++D LCK  ++ +A +LL++MIQ G+ P      
Sbjct: 252 NWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVP------ 305

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+  Y  LI G C +G L +A+EL  S+   G  P+V++YN+ I+  C   ++++A  LF
Sbjct: 306 NLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLF 365

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA-----SILSIIVD 240
            +M   G+ P+      L+ +     +     EL R      + PYA      I  I +D
Sbjct: 366 NEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRV-----IKPYAMPKDLCICCIFLD 420

Query: 241 LLVKNEISLNSIPQFNR 257
            L KN     ++  FN 
Sbjct: 421 GLCKNGYIFEAMKLFNE 437



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 2/218 (0%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +T N +I+ LC    +++       +      P+VVT+ +LI G C  +   EA  L
Sbjct: 124 PDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKL 183

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGC 132
           F+ M   G   +VVT+  ++  LC    ++ A +    M+     P  F C  N+++Y  
Sbjct: 184 FMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLN-DTSPYVFNCRPNVISYSI 242

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK+G  + A  L   +   G+ PNVVT+++ I  LC + Q+ KA  L   M   G
Sbjct: 243 IIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIG 302

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN   +T+L+  F    + +   EL  SM  +   P
Sbjct: 303 IVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEP 340



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 108/219 (49%), Gaps = 12/219 (5%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++N ++ GL K     +   L+ QM    + P+++T N LI+  C  N  NE       +
Sbjct: 93  SFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGI 152

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           M RG   DVVTF  ++  LC   ++ EAT+L   M + G  P      N+V YG LI GL
Sbjct: 153 MRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTP------NVVTYGTLIKGL 206

Query: 138 CKIGKLKNARELSQSLTR------AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           C +G +  A +  Q +            PNV++Y+I I  LC     ++A  LF +M  +
Sbjct: 207 CALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQ 266

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           GV PN V F+ L+    ++ +  K  +LL  M +  ++P
Sbjct: 267 GVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVP 305



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 58/98 (59%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ + Y+++I G CK+G VDKA  LF +M++   +P+++TY+ L+ GF  +N   +   
Sbjct: 479 QPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQ 538

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
           L   M+++ +  D   + ++ D +CK+ K  E   LL 
Sbjct: 539 LLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQ 576



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 11/127 (8%)

Query: 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           +A +  DLM++           +I ++  L+ GL KI        L + +  AGL P+++
Sbjct: 79  QAHQFFDLMMR-----------SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLL 127

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T NI I+ LCN  ++++       +  +G  P+ V FTTL+     ++   +  +L   M
Sbjct: 128 TLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRM 187

Query: 224 DKRNVMP 230
            K    P
Sbjct: 188 QKLGCTP 194


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 130/233 (55%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYNTIID LCK+  V++A E   +M D  I P+VVTYN+++HGFC     NEA  
Sbjct: 233 KPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATR 292

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ R +  D VTFN+++D LCK   + EA  + + M + G  P+A+       Y  
Sbjct: 293 LFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAY------TYNA 346

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C   ++  A ++   +   G  PN+ +YNI I+  C  ++M++A  L  +M  K 
Sbjct: 347 LMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKN 406

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+ V ++TLM    +     + + L + M    ++P     SI++D   K+
Sbjct: 407 LTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKH 459



 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 134/239 (56%), Gaps = 6/239 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN  +YN +I+G CK   +++AK L  +M ++N+ P+ VTY++L+ G C      
Sbjct: 369 GKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPR 428

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  LF EM   GL  D++ +++++D  CK+  +DEA +LL  M +  ++P      NI+
Sbjct: 429 EALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKP------NII 482

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI G+   GKL+ A+EL   L+  G+ P++ TYN+ I  L  +   D+A++ F  M
Sbjct: 483 LYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKM 542

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           E  G  P+   +  ++  F++  ++S  I+L+  M  +     +S   +++DL   +EI
Sbjct: 543 EDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESHDEI 601



 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 119/218 (54%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN ++YNT+I+GLCK G    A  +F +M+     PNVVTYN++I   C     NEA  
Sbjct: 198 EPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVE 257

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM+DRG+  DVVT+N I+   C   +++EATRL   M+   V PD       V +  
Sbjct: 258 FLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDT------VTFNI 311

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGLCK G +  AR +S+++T  G  PN  TYN  +   C   QMD+A  +   M  KG
Sbjct: 312 LVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKG 371

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            APN   +  L+  + +    ++   LL  M ++N+ P
Sbjct: 372 CAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTP 409



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 131/235 (55%), Gaps = 6/235 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVT+N ++DGLCKEG V +A+ +   M ++   PN  TYN+L+ G+C  N  +EA  +
Sbjct: 304 PDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKV 363

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ +G   ++ ++N++++  CK+++M+EA RLL  M +  + PD       V Y  L
Sbjct: 364 LGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDT------VTYSTL 417

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC++G+ + A  L + +  +GL+P+++ Y+I +   C    +D+A  L  +M  + +
Sbjct: 418 MQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI 477

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            PN +++T L+       +     EL   +    + P     ++++  L+K  +S
Sbjct: 478 KPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLS 532



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 6/239 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  +P+ +T+NT+I+GLC EG + +A  LF +M      PNV++YN++I+G C   + 
Sbjct: 158 FKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNT 217

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  +F +M     + +VVT+N I+D LCK+R ++EA   L  M+  G+ PD      +
Sbjct: 218 IMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPD------V 271

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  ++ G C +G+L  A  L + +    +MP+ VT+NI +  LC +  + +A  +   
Sbjct: 272 VTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSET 331

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           M  KG  PN   +  LM  +   N+  + I++L  M  +   P  S  +I+++   K++
Sbjct: 332 MTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSK 390



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 8/233 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FGV    N  + N +I+ LC+   VD A  +  +M    I P+ +T+N+LI+G C     
Sbjct: 125 FGVT--HNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKI 182

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA  LF EM+  G + +V+++N +++ LCKN     A R+   M Q   +P      N+
Sbjct: 183 KEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKP------NV 236

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  +ID LCK   +  A E    +   G+ P+VVTYN  +H  C+  Q+++A  LF +
Sbjct: 237 VTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKE 296

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           M  + V P+ V F  L+    ++   S+   +  +M ++   P A   + ++D
Sbjct: 297 MVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMD 349



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V +   +  + K+     A  L  QM    +  NV + N LI+  C  +  + A  
Sbjct: 93  RPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVS 152

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M   G+Q D +TFN +++ LC   K+ EA  L + M+  G  P      N+++Y  
Sbjct: 153 VMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEP------NVISYNT 206

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCK G    A  + + + +    PNVVTYN  I +LC D  +++A +   +M  +G
Sbjct: 207 VINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRG 266

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + T++  F    + ++   L + M  RNVMP     +I+VD L K
Sbjct: 267 IPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCK 318



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 6/174 (3%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+    +  VV F   +  + K ++   A  L + M   GV        N+ +   L
Sbjct: 84  FYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTH------NVYSLNVL 137

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ LC++  +  A  +   + + G+ P+ +T+N  I+ LCN+ ++ +A  LF +M   G 
Sbjct: 138 INCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGH 197

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            PN + + T++    +   T   + + R M++    P     + I+D L K+ +
Sbjct: 198 EPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRL 251



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 68/158 (43%), Gaps = 6/158 (3%)

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +D+A      M++   RP      ++V +G  +  + K  +  +A  L   +   G+  N
Sbjct: 77  IDDALTSFYRMVRMNPRP------SVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHN 130

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V + N+ I+ LC    +D A  +   M   G+ P+ + F TL+     + +  + + L  
Sbjct: 131 VYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFN 190

Query: 222 SMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            M      P     + +++ L KN  ++ ++  F + +
Sbjct: 191 EMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKME 228


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 123/217 (56%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+++I+G C    +D+AK +F  M  ++  PNVVTYN+LI GFC A    E   L
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  + VT+N ++  L +    D A ++   M+  GV PD      I+ Y  L
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD------IITYSIL 471

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK GKL+ A  + + L ++ + P++ TYNI I  +C   +++   DLF  + +KGV
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN +I+TT++  F RK    +   L R M +   +P
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLP 568



 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I G CK   V++  ELF +M    +  N VTYN+LI G   A D + A+
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  D++T+++++D LCK  K+++A  + + + +  + PD      I  Y 
Sbjct: 451 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD------IYTYN 504

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++  +L  SL+  G+ PNV+ Y   I   C     ++A  LF +M+  
Sbjct: 505 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 564

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  P+   + TL+ + +R  + +   EL++ M     +  AS +S+++++L
Sbjct: 565 GTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 615



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V YNTIIDGLCK   +D A  LF +M+ + I P+V TYNSLI   C     ++A  
Sbjct: 252 EADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASR 311

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M++R +  +VVTF+ ++D   K  K+ EA +L D MI+  + PD F       Y  
Sbjct: 312 LLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF------TYSS 365

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+ + + +      PNVVTYN  I   C  +++++  +LF +M  +G
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 425

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  N V + TL+    +  +     ++ + M    V P     SI++D L K
Sbjct: 426 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 477



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 120/218 (55%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY  +++GLCK G +D A  L  +M+   I  +VV YN++I G C     ++A 
Sbjct: 216 CQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAF 275

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M  +G++ DV T+N ++  LC   +  +A+RLL  MI+  + P      N+V + 
Sbjct: 276 ALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINP------NVVTFS 329

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GKL  A +L   + +  + P++ TY+  I+  C  +++D+A  +F  M  K
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              PN V + TL+  F +     + +EL R M +R ++
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 427



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    +  A  L  QM +    P+ VT+N+LIHG    N  +EA  
Sbjct: 147 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVA 206

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ RG Q D+VT+  +++ LCK   +D A  LL  M +G +  D      +V Y  
Sbjct: 207 LVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEAD------VVIYNT 260

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK   + +A  L   +   G+ P+V TYN  I  LCN  +   A  L  +M  + 
Sbjct: 261 IIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERK 320

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + PN V F+ L+ +F+++ +  +  +L   M KR++ P    Y+S++
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 367



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           +YN +I+  C+   +  A  +  +M      P++VT +SL++G+C++   ++A  L  +M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 176

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++ G + D VTFN ++  L  + K  EA  L+D M+Q G +PD      +V YG +++GL
Sbjct: 177 VEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPD------LVTYGAVVNGL 230

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G +  A  L + + +  +  +VV YN  I  LC  + +D A  LF  ME KG+ P+ 
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDV 290

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + +L+         S    LL +M +R + P     S ++D  VK
Sbjct: 291 FTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVK 337



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 102/226 (45%), Gaps = 6/226 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A  LF +M      P++V +N L+         +    L   M +  +  D+ ++N+
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C+  ++  A  +L  M++ G  PD      IV    L++G C   ++ +A  L  
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPD------IVTLSSLLNGYCHSKRISDAVALVD 174

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  P+ VT+N  IH L    +  +A  L   M  +G  P+ V +  ++    ++ 
Sbjct: 175 QMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRG 234

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           +    + LL+ M+K  +     I + I+D L K +   ++   FN+
Sbjct: 235 DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNK 280



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN + Y T+I G C++G  ++A  LF +MK++   P+   YN+LI       D   +  
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAE 591

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM   G   D  T +++++ L   R
Sbjct: 592 LIKEMRSCGFVGDASTISMVINMLHDGR 619


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 138/238 (57%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V YNTIID +CK   V++A +L+ +M  E I+P+VVTY++LI GF       
Sbjct: 171 GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLK 230

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M+   ++ DV TFN+++D  CK+ KM E   +  +M++ G++P      N+V
Sbjct: 231 DAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKP------NVV 284

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A  +  ++ + G+ P+  +YNI I+  C  +++D+A +LF  M
Sbjct: 285 TYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKM 344

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             K + PN V +T+L+    +  + S  ++L+  M  R V P     S I+D L KN 
Sbjct: 345 HCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNH 402



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 124/260 (47%), Gaps = 49/260 (18%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T+N ++DG CK+G + + K +F  M  + I PNVVTY SL+ G+C     N+A  
Sbjct: 245 KPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANS 304

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M   G+  D  ++N++++  CK +K+DEA  L   M    + P      N+V Y  
Sbjct: 305 IFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIP------NVVTYTS 358

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA----------- 181
           LIDGLCK GK+  A +L   +   G+ P+++TY+  + ALC + Q+DKA           
Sbjct: 359 LIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQV 418

Query: 182 -HDLFLD-------------------------------MEVKGVAPNCVIFTTLMPSFIR 209
             DLF+                                ME  G  P+   +  ++ S  +
Sbjct: 419 FEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFK 478

Query: 210 KNETSKVIELLRSMDKRNVM 229
           K+E     +LLR M  R ++
Sbjct: 479 KDENDMAEKLLREMIARGLL 498



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 28/232 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +  I+  L K      A  L  QM+ + I  N+VT N LI+ F        +  +
Sbjct: 58  PPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSV 117

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  ++ +G   +V+T   ++  LC                              V+YG L
Sbjct: 118 FANILKKGYDPNVITLTTLIKGLCLK----------------------------VSYGTL 149

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+G+ + A +L + +    + PNVV YN  I ++C  + +++A DL+ +M  +G+
Sbjct: 150 INGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGI 209

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +P+ V ++ L+  F    +    I+L   M   N+ P     +I+VD   K+
Sbjct: 210 SPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKD 261


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 140/232 (60%), Gaps = 10/232 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NEAEY 72
           P+ VTYN++++GLCK G VD+A+ L +   D+  +PNV+TY++LI G C    G +EA  
Sbjct: 113 PDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRELRGVSEALK 169

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  ++ +G + +V T+N+++D L K  +++EA  L   +++ G+ PDA      + Y  
Sbjct: 170 LFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDA------ITYTV 223

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            IDGLCK G++++A  + + +   G +P+VV++N  I+ LC ++++D+A  L   ME KG
Sbjct: 224 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 283

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +PN + F TL+    R  +  K +   + M KR V P     +I+VD L K
Sbjct: 284 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 335



 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 122/198 (61%), Gaps = 9/198 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V++N +I+GLCKE  VD+A+ L   M+ +  +PN +++N+LI G C A    +A 
Sbjct: 249 CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAM 308

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNR---KMDEATRLLDLMIQGGVRPDAFCEINIV 128
             F EM+ RG++  VVT+N+++D LCK R   ++ EA  L D MI+ G  PD      +V
Sbjct: 309 TTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPD------VV 362

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LIDGL K GKL +AR L  ++   G +PNV TYN  I  LC  E++D+A +LF+ M
Sbjct: 363 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAM 422

Query: 189 EVKGVAPNCVIFTTLMPS 206
             KG  P+ + + T++ +
Sbjct: 423 VEKGCVPDTITYGTIISA 440



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 10/232 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN ++ GLC  G +  A+ L+ +M     +P+VVTYN+L+HGFC   + +EA  +
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F   + RG   DVVT+N +++  CK  K+DEA R+L  M+   + PD      +V Y  L
Sbjct: 68  FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPD------VVTYNSL 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND-EQMDKAHDLFLDMEVKG 192
           ++GLCK G++  AR L   +   G  PNV+TY+  I  LC +   + +A  LF  +  +G
Sbjct: 122 VNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQG 178

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P    +  L+   ++++  ++  EL   + K  + P A   ++ +D L K
Sbjct: 179 YEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCK 230



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 125/245 (51%), Gaps = 17/245 (6%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG V K    P   TYN +IDGL KE  V++A ELF  +    + P+ +TY   I G C 
Sbjct: 171 FGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCK 230

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           A    +A  +  +M ++G   DVV+ N +++ LCK +++DEA  LL  M   G  P+A  
Sbjct: 231 AGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNA-- 288

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ---MDK 180
               +++  LI G C+ GK K A    + + + G+ P VVTYNI +  LC   Q   + +
Sbjct: 289 ----ISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 344

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           A  LF  M  KG  P+ V ++ L+    +  +      LL +M+ +  +P    Y S++S
Sbjct: 345 AITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLIS 404

Query: 237 IIVDL 241
            +  L
Sbjct: 405 GLCGL 409



 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 13/231 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY   IDGLCK G V+ A  +   M ++   P+VV++N++I+G C     +EAE 
Sbjct: 215 EPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEV 274

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M  +G   + ++FN ++   C+  K  +A      M++ GV+P       +V Y  
Sbjct: 275 LLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKP------TVVTYNI 328

Query: 133 LIDGLCKI---GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           L+DGLCK    G++K A  L  ++   G +P+VVTY+  I  L    ++D A  L   ME
Sbjct: 329 LVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAME 388

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
            KG  PN   + +L+       +  + +EL  +M ++  +P    Y +I+S
Sbjct: 389 AKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIIS 439



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 115/206 (55%), Gaps = 10/206 (4%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M+     PN +TYN+L+ G C     ++A+ L+  M+  G   DVVT+N ++   CK  +
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +DEA ++ D  ++ G  PD      +V Y  LI+G CK  KL  A+ + Q +    L+P+
Sbjct: 61  LDEALKIFDGAVKRGFVPD------VVTYNALINGFCKADKLDEAQRILQRMVSENLVPD 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK-NETSKVIELL 220
           VVTYN  ++ LC + ++D+A  L +D   KG +PN + ++TL+    R+    S+ ++L 
Sbjct: 115 VVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRGVSEALKLF 171

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNE 246
            S+ K+   P     +I++D L+K +
Sbjct: 172 GSVLKQGYEPEVPTYNILIDGLLKED 197


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 123/217 (56%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+++I+G C    +D+AK +F  M  ++  PNVVTYN+LI GFC A    E   L
Sbjct: 342 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 401

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  + VT+N ++  L +    D A ++   M+  GV PD      I+ Y  L
Sbjct: 402 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD------IITYSIL 455

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK GKL+ A  + + L ++ + P++ TYNI I  +C   +++   DLF  + +KGV
Sbjct: 456 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 515

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN +I+TT++  F RK    +   L R M +   +P
Sbjct: 516 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLP 552



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I G CK   V++  ELF +M    +  N VTYN+LI G   A D + A+
Sbjct: 375 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 434

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  D++T+++++D LCK  K+++A  + + + +  + PD      I  Y 
Sbjct: 435 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD------IYTYN 488

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++  +L  SL+  G+ PNV+ Y   I   C     ++A  LF +M+  
Sbjct: 489 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 548

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  + +   EL++ M     +  AS +S+++++L
Sbjct: 549 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 599



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 121/218 (55%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY T+++GLCK G +D A  L  +M+   I  +VV Y ++I   C   + N+A 
Sbjct: 200 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDAL 259

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM ++G++ +VVT+N ++  LC   +  +A+RLL  MI+  + P      N+V + 
Sbjct: 260 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP------NVVTFS 313

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GKL  A +L   + +  + P++ TY+  I+  C  +++D+A  +F  M  K
Sbjct: 314 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 373

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              PN V + TL+  F +     + +EL R M +R ++
Sbjct: 374 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 411



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V Y TIID LC    V+ A  LF +M ++ I PNVVTYNSLI   C     ++A  
Sbjct: 236 EADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 295

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  +VVTF+ ++D   K  K+ EA +L D MI+  + PD F       Y  
Sbjct: 296 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF------TYSS 349

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+ + + +      PNVVTYN  I   C  +++++  +LF +M  +G
Sbjct: 350 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 409

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  N V + TL+    +  +     ++ + M    V P     SI++D L K
Sbjct: 410 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 461



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN++I  LC  G    A  L   M +  INPNVVT+++LI  F       EAE 
Sbjct: 271 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 330

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+ R +  D+ T++ +++  C + ++DEA  + +LMI     P      N+V Y  
Sbjct: 331 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP------NVVTYNT 384

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  +++   EL + +++ GL+ N VTYN  I  L      D A  +F  M   G
Sbjct: 385 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 444

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V P+ + ++ L+    +  +  K + +   + K  + P     +I+++ + K
Sbjct: 445 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 496



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    + +A  L  QM      PN VT+N+LIHG    N  +EA  
Sbjct: 131 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVA 190

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ RG Q D+ T+  +++ LCK   +D A  LL  M +G +  D      +V Y  
Sbjct: 191 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEAD------VVIYTT 244

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LC    + +A  L   +   G+ PNVVTYN  I  LCN  +   A  L  DM  + 
Sbjct: 245 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 304

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + PN V F+ L+ +F+++ +  +  +L   M KR++ P    Y+S++
Sbjct: 305 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 351



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           +YN +I+  C+   +  A  +  +M      P++VT +SL++G+C+    +EA  L  +M
Sbjct: 101 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 160

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
                Q + VTFN ++  L  + K  EA  L+D M+  G +PD F       YG +++GL
Sbjct: 161 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLF------TYGTVVNGL 214

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G +  A  L + + +  +  +VV Y   I ALCN + ++ A +LF +M+ KG+ PN 
Sbjct: 215 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 274

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V + +L+         S    LL  M +R + P     S ++D  VK
Sbjct: 275 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 321



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN + Y T+I G C++G  ++A  LF +MK++   PN  TYN+LI       D   +  
Sbjct: 516 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAE 575

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM   G   D  T +++++ L   R
Sbjct: 576 LIKEMRSCGFVGDASTISMVINMLHDGR 603


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 123/217 (56%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+++I+G C    +D+AK +F  M  ++  PNVVTYN+LI GFC A    E   L
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  + VT+N ++  L +    D A ++   M+  GV PD      I+ Y  L
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD------IITYSIL 471

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK GKL+ A  + + L ++ + P++ TYNI I  +C   +++   DLF  + +KGV
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN +I+TT++  F RK    +   L R M +   +P
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLP 568



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I G CK   V++  ELF +M    +  N VTYN+LI G   A D + A+
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  D++T+++++D LCK  K+++A  + + + +  + PD      I  Y 
Sbjct: 451 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD------IYTYN 504

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++  +L  SL+  G+ PNV+ Y   I   C     ++A  LF +M+  
Sbjct: 505 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 564

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  + +   EL++ M     +  AS +S+++++L
Sbjct: 565 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 615



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 121/218 (55%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY T+++GLCK G +D A  L  +M+   I  +VV Y ++I   C   + N+A 
Sbjct: 216 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDAL 275

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM ++G++ +VVT+N ++  LC   +  +A+RLL  MI+  + P      N+V + 
Sbjct: 276 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP------NVVTFS 329

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GKL  A +L   + +  + P++ TY+  I+  C  +++D+A  +F  M  K
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              PN V + TL+  F +     + +EL R M +R ++
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 427



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V Y TIID LC    V+ A  LF +M ++ I PNVVTYNSLI   C     ++A  
Sbjct: 252 EADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 311

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  +VVTF+ ++D   K  K+ EA +L D MI+  + PD F       Y  
Sbjct: 312 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF------TYSS 365

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+ + + +      PNVVTYN  I   C  +++++  +LF +M  +G
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 425

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  N V + TL+    +  +     ++ + M    V P     SI++D L K
Sbjct: 426 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 477



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN++I  LC  G    A  L   M +  INPNVVT+++LI  F       EAE 
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+ R +  D+ T++ +++  C + ++DEA  + +LMI     P      N+V Y  
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP------NVVTYNT 400

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  +++   EL + +++ GL+ N VTYN  I  L      D A  +F  M   G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V P+ + ++ L+    +  +  K + +   + K  + P     +I+++ + K
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    + +A  L  QM      PN VT+N+LIHG    N  +EA  
Sbjct: 147 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVA 206

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ RG Q D+ T+  +++ LCK   +D A  LL  M +G +  D      +V Y  
Sbjct: 207 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEAD------VVIYTT 260

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LC    + +A  L   +   G+ PNVVTYN  I  LCN  +   A  L  DM  + 
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + PN V F+ L+ +F+++ +  +  +L   M KR++ P    Y+S++
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 367



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           +YN +I+  C+   +  A  +  +M      P++VT +SL++G+C+    +EA  L  +M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
                Q + VTFN ++  L  + K  EA  L+D M+  G +PD F       YG +++GL
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLF------TYGTVVNGL 230

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G +  A  L + + +  +  +VV Y   I ALCN + ++ A +LF +M+ KG+ PN 
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V + +L+         S    LL  M +R + P     S ++D  VK
Sbjct: 291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 337



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN + Y T+I G C++G  ++A  LF +MK++   PN  TYN+LI       D   +  
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAE 591

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM   G   D  T +++++ L   R
Sbjct: 592 LIKEMRSCGFVGDASTISMVINMLHDGR 619


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y++++DGLC+ G + +A E F +M+   I+ +V TYNSLIHG   A    E  + 
Sbjct: 179 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWF 238

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+DRG   D  TF +++D LCK  K+ EA ++L+LM   G  PD      I+ Y  L
Sbjct: 239 LNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPD------ILTYNTL 292

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLC +G+L++A +L +SL   G+  NV +YNI I+  C D+++D+A  LF +M  KG+
Sbjct: 293 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGL 352

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+ V + TL+ +  +        +L   M         S   +++D L KN
Sbjct: 353 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 404



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N  +YN +I+G CK+  +D+A  LF +M+ + + P+ VTYN+LI   C +     A+ 
Sbjct: 318 KLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQK 377

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF+EM   G    + T+ V++D LCKN  ++EA  L   + +   +P      NI  +  
Sbjct: 378 LFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKP------NIEVFSI 431

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG+C+ GKL+ A +    +++ GL P+ + YNI I+ LCN   + +A  L   ME KG
Sbjct: 432 LLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKG 491

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             P+ + F  ++ + +++NE  + I+LL  M  RN  P  ++ S+++
Sbjct: 492 CLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 110/251 (43%), Gaps = 42/251 (16%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT  T++ G+  E  +  A +LF +M ++ +  +  TY  LI+G C A     A  
Sbjct: 74  EPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIK 133

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  E M    + DV T+ +I+D LCK+    EA  +   MI  G+ PD      +V Y  
Sbjct: 134 LH-EKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPD------VVVYSS 186

Query: 133 LIDGLCKIGKLKNARE-------------------LSQSLTRAGLM-------------- 159
           L+DGLC+ G+LK A E                   L   L+RAGL               
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 246

Query: 160 --PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
             P+  T+ I I  LC + ++ +A  +   M  KG  P+ + + TLM       +     
Sbjct: 247 FSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDAT 306

Query: 218 ELLRSMDKRNV 228
           +L  S+  R +
Sbjct: 307 KLFESLADRGI 317


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/246 (34%), Positives = 122/246 (49%), Gaps = 29/246 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ +Y  +IDGL K G +++A +LF +M D  I P+ VTYN +IHG C A   +EA  L
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
           F  M  +G +    TFN+++D  CK  KMDEA RLL  M   G  PD             
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 302

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             C+  +V    LI GLCK G++K ARE+  ++  +G  P+VVT
Sbjct: 303 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 362

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  +H  C   Q ++A +L  DM  +G+APN V +T L+    + N   +   +   M 
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 422

Query: 225 KRNVMP 230
                P
Sbjct: 423 SSGCAP 428



 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ +Y  +IDGL K G ++ A++LF ++    + P+ V Y SLIHG C AN  ++A  L
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M  RG     VT+NVI+D  CK   ++EA  L+  MI+ G  PD      +V Y  +
Sbjct: 68  FADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPD------VVTYNTV 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+++ A  L   + R G  PN  ++N  I  LC   ++D+A  +F +ME + +
Sbjct: 122 MDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDI 181

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+   +  L+    +  + ++  +L R M    + P A   ++++
Sbjct: 182 PPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVI 227



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 124/241 (51%), Gaps = 6/241 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  T+N +ID  CK G +D+A  L  +M D+   P+VVTY++LI G C     ++A 
Sbjct: 251 CRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +L  +M+ R  +  VVT N ++  LCK  ++ EA  +LD M+  G  PD      +V Y 
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD------VVTYN 364

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G C+ G+ + AREL   +   GL PNVVTY   +  LC   ++ +A  +F  M+  
Sbjct: 365 TLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 424

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G APN   +T L+  F    +    ++L   M    + P   +   +   L K+  S  +
Sbjct: 425 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 484

Query: 252 I 252
           +
Sbjct: 485 L 485



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN IID  CK G +++A +L  +M ++   P+VVTYN+++ G C +    EA 
Sbjct: 76  CPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEAL 135

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM   G   +  + N I+  LC+  K+D+A ++   M    + PD++      +YG
Sbjct: 136 LLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSW------SYG 189

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGL K GKL  A +L + +  +G+ P+ VTYN+ IH +C    +D+A +LF  M  K
Sbjct: 190 ILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK 249

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           G  P+   F  L+ +  ++ +  +   LL+ M     +P    Y++++S
Sbjct: 250 GCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLIS 298



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 107/208 (51%), Gaps = 6/208 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+T+I GLC    VD A+ L   M      P VVT N+LIHG C A    EA  +
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G   DVVT+N ++   C+  + + A  LL  M+  G+ P      N+V Y  L
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAP------NVVTYTAL 401

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK  +L  A  +   +  +G  PN+ TY   I   C+  Q+D    LF +M   G+
Sbjct: 402 VSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI 461

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLR 221
           +P+ V++ TL     +   +++ +E+LR
Sbjct: 462 SPDHVVYGTLAAELCKSGRSARALEILR 489



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 131/305 (42%), Gaps = 68/305 (22%)

Query: 14  PNTVTYNTIIDGLCKEGFV-----------------------------------DKAKEL 38
           P+ VTYNT++DGLCK G V                                   D+A ++
Sbjct: 113 PDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQV 172

Query: 39  FLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
           F +M+  +I P+  +Y  LI G   A   NEA  LF  M+D G+    VT+NV++  +C 
Sbjct: 173 FHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCL 232

Query: 99  NRKMDEATRLLDLMIQGGVRP---------DAFCE--------------------INIVA 129
              +DEA  L   M   G RP         DA C+                     ++V 
Sbjct: 233 AYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVT 292

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI GLC I ++ +AR L + + +    P VVT N  IH LC   ++ +A ++   M 
Sbjct: 293 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMV 352

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             G +P+ V + TL+    R  +T +  ELL  M  R + P     + +V  L K     
Sbjct: 353 SSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKA---- 408

Query: 250 NSIPQ 254
           N +P+
Sbjct: 409 NRLPE 413



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP  VT NT+I GLCK G + +A+E+   M     +P+VVTYN+L+HG C A     A 
Sbjct: 321 CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAR 380

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ RGL  +VVT+  ++  LCK  ++ EA  +   M   G  P      N+  Y 
Sbjct: 381 ELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP------NLFTYT 434

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            LI G C  G++    +L   +  AG+ P+ V Y      LC   +  +A ++ 
Sbjct: 435 ALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEIL 488



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 6/203 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M + N++P+  +Y  LI G   A   N+A  LF +++  G+    V +  ++  LC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
            D+A  L   M + G      C  + V Y  +ID  CK G L+ A +L + +   G +P+
Sbjct: 61  FDDARELFADMNRRG------CPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPD 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTYN  +  LC   ++++A  LF +ME  G  PN     T++    ++++  +  ++  
Sbjct: 115 VVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFH 174

Query: 222 SMDKRNVMPYASILSIIVDLLVK 244
            M+ R++ P +    I++D L K
Sbjct: 175 EMEARDIPPDSWSYGILIDGLAK 197



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 11/186 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++ GLCK   + +A  +F QMK     PN+ TY +LI GFC A   +    L
Sbjct: 393 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 452

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG--GVRPDAFCEINIVAYG 131
           F EM+  G+  D V +  +  ELCK+ +   + R L+++ +G   +R +A+ +     Y 
Sbjct: 453 FGEMVCAGISPDHVVYGTLAAELCKSGR---SARALEILREGRESLRSEAWGD---EVYR 506

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF---LDM 188
             +DGL   GK++ A    + + R G +P        +  LC   Q  +A  +    +D+
Sbjct: 507 FAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDL 566

Query: 189 EVKGVA 194
              G A
Sbjct: 567 AYGGKA 572



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 6/140 (4%)

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           V PD++      +YG LIDGL K GKL +AR+L Q L  +G+ P+ V Y   IH LC   
Sbjct: 6   VSPDSW------SYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMAN 59

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
             D A +LF DM  +G  P+ V +  ++ +  ++    +  +L++ M +   +P     +
Sbjct: 60  SFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 237 IIVDLLVKNEISLNSIPQFN 256
            ++D L K+     ++  FN
Sbjct: 120 TVMDGLCKSGRVEEALLLFN 139


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 136/280 (48%), Gaps = 64/280 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT+N +ID LCKEG V +AK+L   M    I PN++TYNSLI GFC   D N A  
Sbjct: 301 QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 360

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL-------------------LDLMI 113
           LF+ M  +G + DV+ + V+++  CK  K++EA +L                   L  + 
Sbjct: 361 LFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLF 420

Query: 114 QGGVRPDA-------------------------FCE--------------------INIV 128
           QGG   DA                          C+                    ++I 
Sbjct: 421 QGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIE 480

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            + CLIDGLCK GKL+ A EL + L +  L P+VVTYNI IH  C   Q+ KA+ LF  M
Sbjct: 481 CFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKM 540

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           E  G  P+ + + TL+  F    +  KV+ELL  M +R+V
Sbjct: 541 EKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDV 580



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 141/259 (54%), Gaps = 14/259 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N +  +G+  KP  ++Y+ IID LCK+   D+A++LF +MK + + P V++Y SL+  
Sbjct: 227 MLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW- 285

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
                   EA+ LF EM+++G+Q +VVTFNV++D LCK  K+ EA  LL++MIQ G+ P 
Sbjct: 286 -------EEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVP- 337

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N++ Y  LI+G C +G L +AREL  S+   G  P+V+ Y + I+  C   ++++
Sbjct: 338 -----NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEE 392

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  L+  M   G  P+   +  L+    +  +     +L   M    +     I  I ++
Sbjct: 393 AMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLN 452

Query: 241 LLVKNEISLNSIPQFNRQK 259
            L KN     ++  FN+ K
Sbjct: 453 GLCKNGCLFEAMELFNKLK 471



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 20/237 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   ++  ++ GL K     +   L+ QM+   I+P+  T N L++  C  N   E   +
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAV 153

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ RG   D+VT+  ++  LC   ++ +A  L   M + G  P+A      + YG L
Sbjct: 154 MAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNA------ITYGTL 207

Query: 134 IDGLCKIGKLKNARELSQ------SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + GLC+ G +  A +L Q      SL      P V++Y+I I ALC D + D+A DLF +
Sbjct: 208 MKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEE 267

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M+V+G+ P  + +T+LM       E +K   L   M  + V P     ++++D+L K
Sbjct: 268 MKVQGMTPTVISYTSLM------WEEAK--RLFNEMVNQGVQPNVVTFNVLIDVLCK 316


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 139/238 (58%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V YNTIID +CK   V++A +LF +M  + I+P+VVTY++LI GFC      
Sbjct: 218 GNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLK 277

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M+   ++ DV TFN++++  CK+ KM E   + D+M++ G++P      N V
Sbjct: 278 DAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP------NFV 331

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ +  ++ + G+ P++ +Y+I I+  C  ++ D+A +LF +M
Sbjct: 332 TYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM 391

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             K + P+ V +++L+    +    S  ++L+  M  R V P     + I+D L K  
Sbjct: 392 HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTH 449



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 125/234 (53%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN+++DG C    V+KAK +F  M    +NP++ +Y+ +I+GFC     +EA  
Sbjct: 327 KPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMN 386

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  + +  DVVT++ ++D L K+ ++  A +L+D M   GV P      NI  Y  
Sbjct: 387 LFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPP------NICTYNS 440

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D LCK  ++  A  L       G  P++ TY+I I  LC   +++ A  +F D+ VKG
Sbjct: 441 ILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKG 500

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              +   +T ++  F  +   ++ + LL  M+    +P A    II+  L K +
Sbjct: 501 YNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKD 554



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y+ +I+G CK    D+A  LF +M  +NI P+VVTY+SLI G   +   + A  L
Sbjct: 363 PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQL 422

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M DRG+  ++ T+N I+D LCK  ++D+A  LL      G +PD      I  Y  L
Sbjct: 423 VDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPD------ISTYSIL 476

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ GKL++AR++ + L   G   +V  Y I I   C +   ++A  L   ME  G 
Sbjct: 477 IKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGC 536

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            P+   +  ++ S  +K+E     +LLR M  R +
Sbjct: 537 IPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 571



 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + ++Y T+I GLCK G    A +L  ++    + PNVV YN++I   C     NEA  LF
Sbjct: 189 DQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLF 248

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +G+  DVVT++ ++   C   K+ +A  L + MI   ++PD +       +  L+
Sbjct: 249 SEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVY------TFNILV 302

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +  CK GK+K  + +   + + G+ PN VTYN  +   C  ++++KA  +F  M   GV 
Sbjct: 303 NAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVN 362

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+   ++ ++  F +  +  + + L + M ++N++P     S ++D L K+
Sbjct: 363 PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKS 413



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 119/267 (44%), Gaps = 41/267 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT------------------- 53
           KPN V  N +I+  C+ G +  A  +F ++      P+ +T                   
Sbjct: 117 KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFL 176

Query: 54  ----------------YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                           Y +LIHG C   +   A  L   +    +Q +VV +N I+D +C
Sbjct: 177 FHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMC 236

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K + ++EA  L   M+  G+ PD      +V Y  LI G C +GKLK+A +L   +    
Sbjct: 237 KVKLVNEAFDLFSEMVSKGISPD------VVTYSALISGFCILGKLKDAIDLFNKMILEN 290

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + P+V T+NI ++A C D +M +   +F  M  +G+ PN V + +LM  +    E +K  
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
            +  +M +  V P     SI+++   K
Sbjct: 351 SIFNTMAQGGVNPDIQSYSIMINGFCK 377



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 101/184 (54%), Gaps = 8/184 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+++IDGL K G +  A +L  QM D  + PN+ TYNS++   C  +  ++A  L
Sbjct: 398 PDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIAL 457

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             +  D+G Q D+ T+++++  LC++ K+++A ++  DL+++G         +++ AY  
Sbjct: 458 LTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKG-------YNLDVYAYTI 510

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C  G    A  L   +   G +P+  TY I I +L   ++ D A  L  +M  +G
Sbjct: 511 MIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARG 570

Query: 193 VAPN 196
           +  N
Sbjct: 571 LPLN 574



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N I+  L K         L  +M+   I PN+V  N LI+ FC       A  +
Sbjct: 83  PPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSV 142

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +++  G   D +TF  +   LC   ++ +A    D ++  G   D       ++YG L
Sbjct: 143 FAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQ------ISYGTL 196

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK+G+ + A +L Q +    + PNVV YN  I ++C  + +++A DLF +M  KG+
Sbjct: 197 IHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGI 256

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +P+ V ++ L+  F    +    I+L   M   N+ P     +I+V+   K+
Sbjct: 257 SPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKD 308



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 57/105 (54%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I GLC+ G ++ A+++F  +  +  N +V  Y  +I GFC     NEA  
Sbjct: 467 QPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALA 526

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           L  +M D G   D  T+ +I+  L K  + D A +LL  MI  G+
Sbjct: 527 LLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 571


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y T+IDGLCK G +D A   F QM D+ + PNVV Y SLIH  C  +   +AE L
Sbjct: 215 PNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEEL 274

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E++D+G+  ++V FN I+D LCK  ++ E+ +L DL+   GV PD      ++ Y  L
Sbjct: 275 IFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPD------VITYSTL 328

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L   +   GL P+ VTY+  I+  C   +M+ A  LF +ME  GV
Sbjct: 329 IDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGV 388

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+ + +  ++    R   T+   EL   + +       S  +II+
Sbjct: 389 NPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIIL 434



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN+++D LCK G   +A+++F  M    + P++ TY +L+HG+       E   
Sbjct: 109 EPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHD 168

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+  G+Q D   FN+++    K  K+DE   +   M Q G+ P+A      V Y  
Sbjct: 169 LLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNA------VNYRT 222

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK+G+L +A    + +   GL PNVV Y   IHALC  ++ +KA +L  ++  +G
Sbjct: 223 VIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQG 282

Query: 193 VAPNCVIFTTLMPSFIRKN---ETSKVIELLRSMD-KRNVMPYASIL 235
           + PN V F T++ S  ++    E+ K+ +LL  +    +V+ Y++++
Sbjct: 283 INPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLI 329



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 138/311 (44%), Gaps = 72/311 (23%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI------------- 58
           C P+ V+YNTIIDGL KEG VDKA   + +M D  ++P+ VTYNS+I             
Sbjct: 7   CPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAM 66

Query: 59  ------------------HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
                             HG+C +    +A  +F +M   G++ DVVT+N +MD LCKN 
Sbjct: 67  EVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNG 126

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL-----------KNAREL 149
           K  EA ++ D M++ G++PD      I  YG L+ G    G L           +N  +L
Sbjct: 127 KCTEARKIFDSMVKRGLKPD------ITTYGTLLHGYASKGALVEMHDLLALMVQNGMQL 180

Query: 150 SQ------------------------SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
                                      + + GL PN V Y   I  LC   ++D A   F
Sbjct: 181 DHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNF 240

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M  KG+ PN V++T+L+ +    ++  K  EL+  +  + + P     + I+D L K 
Sbjct: 241 EQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKE 300

Query: 246 EISLNSIPQFN 256
              + S   F+
Sbjct: 301 GRVIESKKLFD 311



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 10/203 (4%)

Query: 44  DENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD 103
           D    P+VV+YN++I G     D ++A   + EM+DR +  D VT+N I+  L K + MD
Sbjct: 4   DGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMD 63

Query: 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
            A  +L +M    V P+ F       Y  ++ G C  G+ + A  + + +   G+ P+VV
Sbjct: 64  RAMEVLTVM----VMPNCF------TYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVV 113

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  +  LC + +  +A  +F  M  +G+ P+   + TL+  +  K    ++ +LL  M
Sbjct: 114 TYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALM 173

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
            +  +     + +I++    K E
Sbjct: 174 VQNGMQLDHHVFNILICAYTKQE 196



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 55/90 (61%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP++VTY+T+I+G CK   ++ A  LF +M+   +NP+++TYN ++HG         A+ 
Sbjct: 354 KPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKE 413

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102
           L+  + + G Q ++ T+N+I+ +  K   +
Sbjct: 414 LYARITESGTQLELSTYNIILMDFAKTNSL 443


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 123/219 (56%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNTVTYN +IDG CK   ++ A+ELF QM  + + PNVVT N+L+ G C     N A 
Sbjct: 412 CMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAV 471

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F EM  +GL+ + VT+  ++   C    +++A  L D M++ G  PDA      + Y 
Sbjct: 472 EFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDA------IVYY 525

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GL + GKL  A  +   +  AG  P++V++N+ I+  C   ++D+A+++  +ME  
Sbjct: 526 TLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENA 585

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P+ V + TL+  F +  + S    L++ M K  ++P
Sbjct: 586 GIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVP 624



 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 122/253 (48%), Gaps = 42/253 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT NT++DG+CK G ++ A E F +M+ + +  N VTY +LI  FC  N+  +A  L
Sbjct: 449 PNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMEL 508

Query: 74  FIEMM------------------------DR-----------GLQSDVVTFNVIMDELCK 98
           F EM+                        DR           G   D+V+FNV+++  C+
Sbjct: 509 FDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCR 568

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             K+DEA  +L  M   G++PD       V Y  LI    K G    A  L + + + GL
Sbjct: 569 KNKLDEAYEMLKEMENAGIKPDG------VTYNTLISHFSKTGDFSTAHRLMKKMVKEGL 622

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           +P VVTY   IHA C +  +D+A  +F DM     V PN VI+  L+ S  RKN+    +
Sbjct: 623 VPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLAL 682

Query: 218 ELLRSMDKRNVMP 230
            L+  M  + V P
Sbjct: 683 SLMDDMKVKGVKP 695



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ + Y T+I GL + G +D+A  +  +MK+   +P++V++N LI+GFC  N  +EA 
Sbjct: 517 CSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAY 576

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM + G++ D VT+N ++    K      A RL+  M++ G+ P       +V YG
Sbjct: 577 EMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVP------TVVTYG 630

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            LI   C  G L  A ++ + ++    + PN V YNI I++LC   Q+D A  L  DM+V
Sbjct: 631 ALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKV 690

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           KGV PN   F  +      KN  SK  EL+  M +    P    + I+ + L
Sbjct: 691 KGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWL 742



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 125/270 (46%), Gaps = 47/270 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKE-----------------------------------L 38
           PN++    +I  LC+ G  D+A +                                   L
Sbjct: 268 PNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTL 327

Query: 39  FLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG------LQSDVVTFNVI 92
             +MK+ +I PNVVT+  LI+  C     +EA  +F E M+ G      ++ DV+T+N +
Sbjct: 328 LAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVF-EKMNGGESNGFLVEPDVITYNTL 386

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +D LCK  + +E   L++ M     R    C  N V Y CLIDG CK   ++ AREL   
Sbjct: 387 IDGLCKVGRQEEGLGLVERM-----RSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQ 441

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           + + G+ PNVVT N  +  +C   +++ A + F +M+ KG+  N V +T L+ +F   N 
Sbjct: 442 MNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNN 501

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             K +EL   M +    P A +   ++  L
Sbjct: 502 IEKAMELFDEMLEAGCSPDAIVYYTLISGL 531



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN-----PNVVTYNSLIHGFCYANDG 67
           +PN VT+  +I+ LCK   VD+A E+F +M     N     P+V+TYN+LI G C     
Sbjct: 337 QPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQ 396

Query: 68  NEAEYLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            E   L   M  +     + VT+N ++D  CK   ++ A  L D M + GV P      N
Sbjct: 397 EEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPP------N 450

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V    L+DG+CK G++  A E    +   GL  N VTY   I A CN   ++KA +LF 
Sbjct: 451 VVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFD 510

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +M   G +P+ +++ TL+    +  +  +   +L  M +    P
Sbjct: 511 EMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSP 554



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 18/244 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKE------LFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           PN+ T + +   L K   V +A +      L  +  +  + PN +    LI   C +   
Sbjct: 227 PNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRT 286

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A  +   +M  G   +  + N ++  L + R+      LL  M +  ++P      N+
Sbjct: 287 DRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQP------NV 340

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRA---GLM--PNVVTYNITIHALCNDEQMDKAH 182
           V +G LI+ LCK  ++  A E+ + +      G +  P+V+TYN  I  LC   + ++  
Sbjct: 341 VTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGL 400

Query: 183 DLFLDMEVKG-VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
            L   M  +    PN V +  L+  + + +      EL   M+K  V P    L+ +VD 
Sbjct: 401 GLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDG 460

Query: 242 LVKN 245
           + K+
Sbjct: 461 MCKH 464



 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 18/221 (8%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           +K  +LF   K   I  +V     LI  F  A   +E+  ++ E+      + +   N++
Sbjct: 141 NKLLDLFKTSKSHKIPLSVNAATLLIRCFGRAQMVDESFLVYNELCPSRRLTHIR--NIL 198

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE---- 148
           +D L +  ++D+A  LLD M+Q    P A    N      +   L K  K+  A +    
Sbjct: 199 IDVLFRKGRVDDALHLLDEMLQ----PKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEI 254

Query: 149 --LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD-MEVKGV--APNCVIFTTL 203
             L        + PN +     I  LC   + D+A D+    M++ GV  A +C     L
Sbjct: 255 VGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASC---NAL 311

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + +  R  E  ++  LL  M + ++ P      I+++ L K
Sbjct: 312 LTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCK 352


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 124/234 (52%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN VTY+TIID LCK+  V+ A E   +M +  I PNV TYNS++HGFC     NEA 
Sbjct: 229 CKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEAT 288

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ R +  + VTF +++D LCK   + EA  + + M + GV PD      I  Y 
Sbjct: 289 RLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPD------ISTYN 342

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C    +  A+++ + + R G  P   +YNI I+  C   +MD+A  L  +M  K
Sbjct: 343 ALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHK 402

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + P+ V ++TLM    +     + + L + M      P      I++D   K+
Sbjct: 403 ALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKH 456



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 10/246 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   +YN +I+G CK   +D+AK L  +M  + +NP+ VTY++L+ G C      EA 
Sbjct: 369 CAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEAL 428

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM   G   ++VT+ +++D  CK+  +DEA +LL  M +  + P      NIV Y 
Sbjct: 429 NLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEP------NIVHYT 482

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G+   GKL+ A+EL   L   G  P++ TY + I  L  +   D+A+DLF  ME  
Sbjct: 483 ILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDD 542

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  PN   +  ++  F++  ++S  I L+  M  +      S   +++DL  ++EI    
Sbjct: 543 GFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQDEI---- 598

Query: 252 IPQFNR 257
           I QF R
Sbjct: 599 ISQFMR 604



 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 125/235 (53%), Gaps = 6/235 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVT+  ++DGLCKEG V +A+ +F  M ++ + P++ TYN+L+ G+C     NEA+ +
Sbjct: 301 PNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKV 360

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G      ++N++++  CK+R+MDEA  LL  M    + PD       V Y  L
Sbjct: 361 FEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDT------VTYSTL 414

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC++G+ K A  L + +   G  PN+VTY I +   C    +D+A  L   M+ K +
Sbjct: 415 MQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKL 474

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            PN V +T L+       +     EL   +      P     ++++  L+K  +S
Sbjct: 475 EPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLS 529



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 129/236 (54%), Gaps = 12/236 (5%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +   P+ +T+N +I+GLC EG + +A ELF +M      PNV++Y ++I+G C   + 
Sbjct: 155 FKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNT 214

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A  +F +M   G + +VVT++ I+D LCK+R +++A   L  M++ G+ P      N+
Sbjct: 215 SMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPP------NV 268

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  ++ G C +G+L  A  L + +    +MPN VT+ I +  LC +  + +A  +F  
Sbjct: 269 FTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFET 328

Query: 188 MEVKGVAPNCVIFTTLMPSFIRK---NETSKVIELLRSMDKRNVMPYASILSIIVD 240
           M  KGV P+   +  LM  +  +   NE  KV E+   M ++   P A   +I+++
Sbjct: 329 MTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEI---MIRKGCAPGAHSYNILIN 381



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V +   +    K+        L  QM    +  NV + N LI+  C  N  + +  
Sbjct: 90  RPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVS 149

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M   G+  D +TFN +++ LC   K+ EA  L + M++ G  P      N+++Y  
Sbjct: 150 VLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEP------NVISYTT 203

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCK G    A ++ + + + G  PNVVTY+  I +LC D  ++ A +   +M  +G
Sbjct: 204 VINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERG 263

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN   + +++  F    + ++   L + M  R+VMP     +I+VD L K
Sbjct: 264 IPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCK 315



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 89/193 (46%), Gaps = 12/193 (6%)

Query: 60  GFCYANDGN----EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           GF   N  N    +A   F  M+    +  VV F   +    K ++      L + M   
Sbjct: 63  GFVSNNSNNVCVDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQM--- 119

Query: 116 GVRPDAF-CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
               D F    N+ +   LI+ LC++  +  +  +   + + G+ P+ +T+N  I+ LCN
Sbjct: 120 ----DLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCN 175

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
           + ++ +A +LF +M  +G  PN + +TT++    +   TS  +++ + M++    P    
Sbjct: 176 EGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVT 235

Query: 235 LSIIVDLLVKNEI 247
            S I+D L K+ +
Sbjct: 236 YSTIIDSLCKDRL 248



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG   +P+  TY  +I GL KEG  D+A +LF +M+D+   PN  +YN +I GF    D 
Sbjct: 505 FGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDS 564

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           + A  L  EM+ +    ++ TF +++D
Sbjct: 565 STAIRLIDEMVGKRFSVNLSTFQMLLD 591


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 134/252 (53%), Gaps = 41/252 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+N++ID   KEG + +A++LF +M   +I+PN+VTYNSLI+GFC  +  +EA+ +
Sbjct: 324 PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 383

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDE----------------------------- 104
           F  M+ +    DVVT+N ++   CK ++++E                             
Sbjct: 384 FTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 443

Query: 105 ------ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
                 A ++   M+  GV PD      I+ Y  L+DGLCK GKL+ A  + + L ++ +
Sbjct: 444 AGDCDMAQKIFKKMVSDGVPPD------IITYSILLDGLCKYGKLEKALVVFEYLQKSKM 497

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            PN+ TYNI I  +C   +++   DLF  + +KGV PN +I+TT++  F RK    +   
Sbjct: 498 EPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 557

Query: 219 LLRSMDKRNVMP 230
           L R M +   +P
Sbjct: 558 LFREMKEDGTLP 569



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+I G CK   V++  ELF +M    +  N VTYN+LI G   A D + A+
Sbjct: 392 CLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 451

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  D++T+++++D LCK  K+++A  + + + +  + P      NI  Y 
Sbjct: 452 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP------NIYTYN 505

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++  +L  SL+  G+ PNV+ Y   I   C     ++A  LF +M+  
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 565

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  P+   + TL+ + +R  + +   EL++ M     +  AS +S+++++L
Sbjct: 566 GTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 616



 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + N V YNTIIDGLCK   +D A +LF +M+ + I P+V TYNSLI   C     ++A  
Sbjct: 253 EANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASR 312

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  +VVTFN ++D   K  K+ EA +L D MIQ  + P      NIV Y  
Sbjct: 313 LLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP------NIVTYNS 366

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+++   +     +P+VVTYN  I   C  +++++  +LF +M  +G
Sbjct: 367 LINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 426

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  N V + TL+    +  +     ++ + M    V P     SI++D L K
Sbjct: 427 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 478



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY T+++GLCK G +D A  L  +M+   I  NVV YN++I G C     ++A 
Sbjct: 217 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAF 276

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M  +G++ DV T+N ++  LC   +  +A+RLL  MI+  + P      N+V + 
Sbjct: 277 DLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINP------NVVTFN 330

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GKL  A +L   + +  + PN+VTYN  I+  C  +++D+A  +F  M  K
Sbjct: 331 SLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 390

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              P+ V + TL+  F +     + +EL R M +R ++
Sbjct: 391 DCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 428



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYN++I  LC  G    A  L   M +  INPNVVT+NSLI  F       EAE 
Sbjct: 288 KPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEK 347

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ R +  ++VT+N +++  C + ++DEA ++  LM+     PD      +V Y  
Sbjct: 348 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD------VVTYNT 401

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  +++   EL + +++ GL+ N VTYN  I  L      D A  +F  M   G
Sbjct: 402 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 461

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V P+ + ++ L+    +  +  K + +   + K  + P     +I+++ + K
Sbjct: 462 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCK 513



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    + +A  L  QM +    P+ VT+N+LIHG    N  +EA  
Sbjct: 148 EPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVA 207

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ RG Q D+ T+  +++ LCK   +D A  LL  M +G +      E N+V Y  
Sbjct: 208 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKI------EANVVIYNT 261

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK   + +A +L   +   G+ P+V TYN  I  LCN  +   A  L  DM  + 
Sbjct: 262 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V F +L+ +F ++ +  +  +L   M +R++ P
Sbjct: 322 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 359



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TY+ +++  C+   +  A  +  +M      P++VT +SL++G+C+    +EA  L 
Sbjct: 115 NHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 174

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M++ G + D VTFN ++  L  + K  EA  L+D M+  G +PD F       YG ++
Sbjct: 175 DQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLF------TYGTVV 228

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G +  A  L + + +  +  NVV YN  I  LC  + MD A DLF  ME KG+ 
Sbjct: 229 NGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIK 288

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+   + +L+         S    LL  M +R + P     + ++D   K
Sbjct: 289 PDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAK 338



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 103/226 (45%), Gaps = 6/226 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A  LF +M      P+++ ++ L+      N  +    L  +M + G+  +  T+++
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C+  ++  A  +L  M++ G  PD      IV    L++G C   ++  A  L  
Sbjct: 122 LLNCFCRRSQLPLALAVLGKMMKLGYEPD------IVTLSSLLNGYCHGKRISEAVALVD 175

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  P+ VT+N  IH L    +  +A  L   M  +G  P+   + T++    ++ 
Sbjct: 176 QMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 235

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           +    + LL+ M+K  +     I + I+D L K +   ++   FN+
Sbjct: 236 DIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNK 281



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN + Y T+I G C++G  ++A  LF +MK++   P+   YN+LI       D   +  
Sbjct: 533 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAE 592

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM   G   D  T +++++ L   R
Sbjct: 593 LIKEMRSCGFVGDASTISMVINMLHDGR 620


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 122/246 (49%), Gaps = 29/246 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ +Y  +IDGL K G +++A +LF +M D  I P+ VTYN +IHG C A   +EA  L
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
           F  M  +G +    TFN+++D  CK  K+DEA RLL  M   G  PD             
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 302

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             C+  +V    LI GLCK G++K ARE+  ++  +G  P+VVT
Sbjct: 303 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 362

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  +H  C   Q ++A +L  DM  +G+APN V +T L+    + N   +   +   M 
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 422

Query: 225 KRNVMP 230
                P
Sbjct: 423 SSGCAP 428



 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 124/241 (51%), Gaps = 6/241 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  T+N +ID  CK G +D+A  L  +M D+   P+VVTY++LI G C     ++A 
Sbjct: 251 CRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +L  +M+ R  +  VVT N ++  LCK  ++ EA  +LD M+  G  PD      +V Y 
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD------VVTYN 364

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G C+ G+ + AREL   +   GL PNVVTY   +  LC   ++ +A  +F  M+  
Sbjct: 365 TLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 424

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G APN   +T L+  F    +    ++L   M    + P   +   +   L K+  S  +
Sbjct: 425 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 484

Query: 252 I 252
           +
Sbjct: 485 L 485



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN +ID  CK G +++A +L  +M ++   P+VVTYN+++ G C ++   EA 
Sbjct: 76  CPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEAL 135

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM   G   +  + N I+  LC+  K+D+A ++   M    + PD++      +YG
Sbjct: 136 LLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSW------SYG 189

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGL K GKL  A +L Q +  +G+ P+ VTYN+ IH +C    +D+A +LF  M  K
Sbjct: 190 ILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK 249

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           G  P+   F  L+ +  ++ +  +   LL+ M     +P    Y++++S
Sbjct: 250 GCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 298



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ +Y  +IDGL K G ++ A+ LF ++    + P+ V Y SLIHG C AN  ++A  L
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M  RG     VT+NV++D  CK   ++EA  L+  MI+ G  PD      +V Y  +
Sbjct: 68  FADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPD------VVTYNTV 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK  +++ A  L   + R G  PN  ++N  I  LC   ++D+A  +F +ME K +
Sbjct: 122 MDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDI 181

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+   +  L+    +  + ++  +L + M    + P A   ++++
Sbjct: 182 PPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVI 227



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 107/208 (51%), Gaps = 6/208 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+T+I GLC    VD A+ L   M      P VVT N+LIHG C A    EA  +
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G   DVVT+N ++   C+  + + A  LL  M+  G+ P      N+V Y  L
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAP------NVVTYTAL 401

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK  +L  A  +   +  +G  PN+ TY   I   C+  Q+D    LF +M   G+
Sbjct: 402 VSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI 461

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLR 221
           +P+ V++ TL     +   +++ +E+LR
Sbjct: 462 SPDHVVYGTLAAELCKSGRSARALEILR 489



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 132/305 (43%), Gaps = 68/305 (22%)

Query: 14  PNTVTYNTIIDGLCK-----------------------------------EGFVDKAKEL 38
           P+ VTYNT++DGLCK                                   +  +D+A ++
Sbjct: 113 PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQV 172

Query: 39  FLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
           F +M+ ++I P+  +Y  LI G   A   NEA  LF  M+D G+    VT+NV++  +C 
Sbjct: 173 FHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCL 232

Query: 99  NRKMDEATRLLDLMIQGGVRP---------DAFCE--------------------INIVA 129
              +DEA  L   M   G RP         DA C+                     ++V 
Sbjct: 233 AYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVT 292

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI GLC I ++ +AR L + + +    P VVT N  IH LC   ++ +A ++   M 
Sbjct: 293 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMV 352

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             G +P+ V + TL+    R  +T +  ELL  M  R + P     + +V  L K     
Sbjct: 353 SSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKA---- 408

Query: 250 NSIPQ 254
           N +P+
Sbjct: 409 NRLPE 413



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 8/236 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP  VT NT+I GLCK G + +A+E+   M     +P+VVTYN+L+HG C A     A 
Sbjct: 321 CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAR 380

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ RGL  +VVT+  ++  LCK  ++ EA  +   M   G  P      N+  Y 
Sbjct: 381 ELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP------NLFTYT 434

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME-- 189
            LI G C  G++    +L   +  AG+ P+ V Y      LC   +  +A ++  +    
Sbjct: 435 ALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRES 494

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           ++  A    ++   +   +   +    +  +R M +   +P     + +V  L K+
Sbjct: 495 LRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKS 550



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M + N++P+  +Y  LI G   A   N+A  LF +++  G+    V +  ++  LC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
            D+A  L   M + G  P        V Y  +ID  CK G L+ A +L + +   G +P+
Sbjct: 61  FDDARELFADMNRRGCPPSP------VTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPD 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTYN  +  LC   ++++A  LF +ME  G  PN     T++    ++++  +  ++  
Sbjct: 115 VVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFH 174

Query: 222 SMDKRNVMPYASILSIIVDLLVK 244
            M+ +++ P +    I++D L K
Sbjct: 175 EMEAKDIPPDSWSYGILIDGLAK 197



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 11/186 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++ GLCK   + +A  +F QMK     PN+ TY +LI GFC A   +    L
Sbjct: 393 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 452

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG--GVRPDAFCEINIVAYG 131
           F EM+  G+  D V +  +  ELCK+ +   + R L+++ +G   +R +A+ +     Y 
Sbjct: 453 FGEMVCAGISPDHVVYGTLAAELCKSGR---SARALEILREGRESLRSEAWGD---EVYR 506

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF---LDM 188
             +DGL + GK++ A    + + R G +P        +  LC   Q  +A  +    +D+
Sbjct: 507 FAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDL 566

Query: 189 EVKGVA 194
              G A
Sbjct: 567 AYGGKA 572



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 6/140 (4%)

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           V PD++      +YG LIDGL K GKL +AR L Q L  +G+ P+ V Y   IH LC   
Sbjct: 6   VSPDSW------SYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMAN 59

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
             D A +LF DM  +G  P+ V +  ++ +  ++    +  +L++ M +   +P     +
Sbjct: 60  SFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 237 IIVDLLVKNEISLNSIPQFN 256
            ++D L K+     ++  FN
Sbjct: 120 TVMDGLCKSSRVEEALLLFN 139


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/249 (35%), Positives = 139/249 (55%), Gaps = 6/249 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   KP+ V YNTII  LCK   +  A +L+ +M  + I+PNVVTYN+L++GFC      
Sbjct: 196 GHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLK 255

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM  + +  DV TFN ++D L K  KM  A  +L +M++  ++PD      +V
Sbjct: 256 EAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPD------VV 309

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LIDG   + K+KNA+ +  S+ ++G+ PNV TY   I  LC ++ +D+A  LF +M
Sbjct: 310 TYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEM 369

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
           + K + P+ V +T+L+    + +   + I L + M ++ + P     +I++D L K    
Sbjct: 370 KYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRL 429

Query: 249 LNSIPQFNR 257
            N+   F R
Sbjct: 430 ENAKEFFQR 438



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY T++DG      +  AK +F  M    + PNV  Y  +I G C     +EA  
Sbjct: 538 KPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMS 597

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  + +  ++VT+  ++D LCKN  ++ A  LL  M + G++PD +      +Y  
Sbjct: 598 LFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVY------SYTI 651

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGLCK G+L+ A+E+ Q L   G   NV  Y   I+ LC     D+A DL   ME KG
Sbjct: 652 LLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKG 711

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P+ V F  ++ +   K+E  K  ++L  M  R +M
Sbjct: 712 CMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGLM 748



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 128/269 (47%), Gaps = 29/269 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY T+IDGLCKE  VD+A  LF +MK +N+ P++VTY SLI G C  +    A  L
Sbjct: 341 PNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIAL 400

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M ++G+Q DV ++ +++D LCK  +++ A      ++  G        +N+  Y  +
Sbjct: 401 CKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYH------LNVQTYNVM 454

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG- 192
           I+GLCK      A +L   +   G MP+ +T+   I AL   ++ DKA  +  +M  +G 
Sbjct: 455 INGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGL 514

Query: 193 ----------------------VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
                                 + P+ V + TLM  +   NE      +  SM +  V P
Sbjct: 515 QEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTP 574

Query: 231 YASILSIIVDLLVKNEISLNSIPQFNRQK 259
                +I++D L K +    ++  F   K
Sbjct: 575 NVQCYTIMIDGLCKKKTVDEAMSLFEEMK 603



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 136/257 (52%), Gaps = 19/257 (7%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  +P+  +Y  ++D LCK G ++ AKE F ++  +  + NV TYN +I+G C A+
Sbjct: 405 KEQGI--QPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKAD 462

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--------- 116
              EA  L  +M  +G   D +TF  I+  L +  + D+A ++L  MI  G         
Sbjct: 463 LFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRL 522

Query: 117 --------VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
                   V   A  + ++V YG L+DG   + +LK+A+ +  S+ + G+ PNV  Y I 
Sbjct: 523 KEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIM 582

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I  LC  + +D+A  LF +M+ K + PN V +T+L+ +  + +   + I LL+ M +  +
Sbjct: 583 IDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGI 642

Query: 229 MPYASILSIIVDLLVKN 245
            P     +I++D L K+
Sbjct: 643 QPDVYSYTILLDGLCKS 659



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 29/261 (11%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN---------------------- 46
           G  C P+ +T+ TII  L ++   DKA+++  +M                          
Sbjct: 476 GKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKA 535

Query: 47  -INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
            I P+VVTY +L+ G+   N+   A+Y+F  M   G+  +V  + +++D LCK + +DEA
Sbjct: 536 CIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEA 595

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
             L + M    + P      NIV Y  LID LCK   L+ A  L + +   G+ P+V +Y
Sbjct: 596 MSLFEEMKHKNMFP------NIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSY 649

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            I +  LC   +++ A ++F  + VKG   N  ++T ++    +     + ++L   M+ 
Sbjct: 650 TILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMED 709

Query: 226 RNVMPYASILSIIVDLLVKNE 246
           +  MP A    II+  L + +
Sbjct: 710 KGCMPDAVTFDIIIWALFEKD 730



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +T NT+I GLC  G + KA     Q+  +    N V+Y +LI+G C   +      L
Sbjct: 131 PNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARL 190

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++    ++ DVV +N I+  LCKN+ + +A  L   MI  G+ P      N+V Y  L
Sbjct: 191 LRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISP------NVVTYNAL 244

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G C +G LK A  L   +    + P+V T+N  I AL  + +M  A  +   M    +
Sbjct: 245 VYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACI 304

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V + +L+  +   N+      +  SM +  V P     + ++D L K ++   ++ 
Sbjct: 305 KPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMS 364

Query: 254 QFNRQK 259
            F   K
Sbjct: 365 LFEEMK 370



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T  +N I+  L           LF + +     P++ T N L++ FC+      A  +
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ RG   + +T N ++  LC   ++ +A    D ++  G       ++N V+Y  L
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGF------QLNQVSYRTL 174

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK G+ K    L + L    + P+VV YN  IH+LC ++ +  A DL+ +M VKG+
Sbjct: 175 INGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGI 234

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +PN V +  L+  F       +   LL  M  +N+ P     + ++D L K
Sbjct: 235 SPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGK 285



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 6/159 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           FN I+  L  N+       L       G  PD  C +NI     L++  C +  +  A  
Sbjct: 66  FNYILSSLVNNKHYPTVISLFKKFESNGATPD-LCTLNI-----LMNCFCHLTHITFAFS 119

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           +  ++ + G  PN +T N  I  LC   ++ KA      +  +G   N V + TL+    
Sbjct: 120 VLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLC 179

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +  ET  V  LLR ++  +V P   + + I+  L KN++
Sbjct: 180 KTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKL 218



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   Y  +I+ LCK G  D+A +L  +M+D+   P+ VT++ +I      ++ ++AE + 
Sbjct: 680 NVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKIL 739

Query: 75  IEMMDRGLQSD 85
            EM+ RGL  +
Sbjct: 740 XEMIARGLMKE 750


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 142/239 (59%), Gaps = 8/239 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V YNTIID +CK   V++A +L+ +M  + I+P+VVTYN+LI GFC      
Sbjct: 205 GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMK 264

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M+   +  +V TFN+++D  CK R++ EA  +L +M++ G++PD F      
Sbjct: 265 DATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVF------ 318

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+D  C + ++  A+ +  ++++ G+ PN+ +Y+I IH  C  +++D+A +LF +M
Sbjct: 319 TYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEM 378

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI-LSIIVDLLVKNE 246
               + P+ V + +L+    +  + S  ++L+  M  R V P+  I  + I+D L KN 
Sbjct: 379 HCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGV-PHDKITYNSILDALCKNH 436



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/216 (39%), Positives = 119/216 (55%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +Y+ +I G CK   VD+A  LF +M   NI P+VVTYNSLI G C     + A  L
Sbjct: 350 PNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKL 409

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG+  D +T+N I+D LCKN ++D+A  LL  M   G++PD      I  Y  L
Sbjct: 410 VDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD------ICTYTTL 463

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+L++AR + + L   G + +V  Y   I   C+    D++ DL   ME  G 
Sbjct: 464 VDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGC 523

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN V +  ++ S   K+E  K  +LLR M  R + 
Sbjct: 524 IPNAVTYEIIICSLFDKDENDKAEKLLREMITRGLF 559



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYN+++D  C    V+KAK +F  +    +NPN+ +Y+ +IHGFC     +EA  
Sbjct: 314 KPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMN 373

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM    +  DVVT+N ++D LCK  K+  A +L+D M   GV  D       + Y  
Sbjct: 374 LFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDK------ITYNS 427

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D LCK  ++  A  L   +   G+ P++ TY   +  LC + +++ A  +F D+ VKG
Sbjct: 428 ILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKG 487

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              +  I+T ++  F       + ++LL  M++   +P A    II+
Sbjct: 488 YILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIII 534



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   +  I+  L K         L  QM+   I  ++V  + LI+ F        +  
Sbjct: 69  KPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFS 128

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++  G + +V+T   ++  LC   ++ +A +  D ++  G        +N V+YG 
Sbjct: 129 VLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGF------HLNKVSYGT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK+G+   A +L + +    + PNVV YN  I ++C  + +++A DL+ +M  KG
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           ++P+ V +  L+  F    +     +L   M   N+ P     +I+VD
Sbjct: 243 ISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVD 290



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 58/105 (55%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY T++DGLCK G ++ A+ +F  +  +    +V  Y ++I GFC     +E+  
Sbjct: 454 QPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLD 513

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           L  +M + G   + VT+ +I+  L    + D+A +LL  MI  G+
Sbjct: 514 LLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 6/162 (3%)

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142
           +  +  F  I+  L K+        L   M   G+  D      +V    LI+   ++G+
Sbjct: 69  KPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSD------LVILSILINCFSQLGQ 122

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
              +  +   + + G  PNV+T    I  LC   Q+ +A      +   G   N V + T
Sbjct: 123 NPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGT 182

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           L+    +  +TS  ++LLR +D + V P   + + I+D + K
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCK 224


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYN++I GLCK     +A +L  +M      P++ TY +LI GFC +   ++A  +
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +++ RG + DVVT++ ++D LCK  ++ EA  L   MI+ G      C  N V Y  L
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-----CMPNTVTYNSL 166

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C++GK+  A  L + +   G  P+VVTY   ++  C   ++D A+DL   M  KG+
Sbjct: 167 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 226

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN V FT+LM    R+N  S  + +L  M +++  P     + I+D
Sbjct: 227 TPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 273



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 110/204 (53%), Gaps = 7/204 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           ++D    P  VTYNSLI G C A   +EA  L  EM+  G   D+ T+  ++   CK++K
Sbjct: 45  VQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKK 104

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG-LMP 160
            D+A R+ + ++  G RPD      +V Y CLIDGLCK G+LK A +L   + ++G  MP
Sbjct: 105 SDDALRVFEQLVARGFRPD------VVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMP 158

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           N VTYN  I   C   +MD+A +L   M   G +P+ V +TTLM  F +        +LL
Sbjct: 159 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 218

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
             M ++ + P     + ++D L +
Sbjct: 219 NQMTRKGLTPNVVTFTSLMDGLCR 242



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 8/215 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TY T+I G CK    D A  +F Q+      P+VVTY+ LI G C      EA 
Sbjct: 85  CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAI 144

Query: 72  YLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            LF  M+  G    + VT+N ++   C+  KMDEA  LL+ M + G  PD      +V Y
Sbjct: 145 DLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPD------VVTY 198

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L++G CK+ +L +A +L   +TR GL PNVVT+   +  LC + ++  A  +  +M  
Sbjct: 199 TTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRR 258

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIE-LLRSMD 224
           K  +P    + T++  + R N+  +  + +L  MD
Sbjct: 259 KSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMD 293



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 8/212 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNTVTYN++I G C+ G +D+A  L  +M +   +P+VVTY +L++GFC     ++A 
Sbjct: 156 CMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAY 215

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M  +GL  +VVTF  +MD LC+  ++ +A  +L  M +    P       +  Y 
Sbjct: 216 DLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP------TVYTYN 269

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DG C++ +L+ AR+    L      PNVV++NI I  LC   +  +A +L  +   +
Sbjct: 270 TILDGYCRVNQLEEARKF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRR 327

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
              P+ V++TT++    R+ +  +   + R M
Sbjct: 328 RCNPDVVMYTTVIDVLCREKKVDEACRVYRKM 359



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 2/103 (1%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYNTI+DG C+   +++A++  L+  D    PNVV++N +I G C  N  +EA 
Sbjct: 261 CSPTVYTYNTILDGYCRVNQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAM 318

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            L  E   R    DVV +  ++D LC+ +K+DEA R+   M++
Sbjct: 319 ELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLE 361



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 51/118 (43%)

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           + +    R    ++  A  +P  VTYN  I  LC  E+  +A+DL  +M   G  P+   
Sbjct: 32  LQRWPGRRGCGAAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFT 91

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           +TTL+  F +  ++   + +   +  R   P     S ++D L K      +I  F R
Sbjct: 92  YTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGR 149



 Score = 41.2 bits (95), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSL 57
           C P+ V Y T+ID LC+E  VD+A  ++ +M +E    PN +TY++ 
Sbjct: 329 CNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYSTF 375


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  157 bits (396), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 149/251 (59%), Gaps = 14/251 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y+TIIDGLCK+  VD+A +L+ +M    I P+V+TY +LI GFC A    EA  
Sbjct: 147 RPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFG 206

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+ + +  ++ T+N ++D LCK  K+ E+  LL +M + GV+PD      +V Y  
Sbjct: 207 LLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPD------VVIYSI 260

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C +G+++ A+++   + + G+ P+V +YNI I+ LC  +++D+A +L  +M  K 
Sbjct: 261 LMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKN 320

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVKNEIS 248
           + P+ V +++L+    +    + +++L + M  R    N++ Y S+L    D L KN+  
Sbjct: 321 MIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLL----DGLCKNQNL 376

Query: 249 LNSIPQFNRQK 259
             +I  F + K
Sbjct: 377 DKAIALFMKMK 387



 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN II+GLCK   VD+A  L  +M  +N+ P+ VTY+SLI G C          L
Sbjct: 288 PDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDL 347

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG  +++VT+N ++D LCKN+ +D+A  L   M + G++P+ +       Y  L
Sbjct: 348 TKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKY------TYTAL 401

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+LK  + L Q L   G   +V TY + I  LC +   D+A  +   ME  G 
Sbjct: 402 IDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGC 461

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
            PN V F  ++ S + K+E  K  +LL  M  + ++P+ +  S
Sbjct: 462 IPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLPFRNFHS 504



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 30/263 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYNT+ID LCKEG V ++K L   M  + + P+VV Y+ L+ G+C   +  +A+ +
Sbjct: 218 PNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQI 277

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
           F+ M+  G+  DV ++N+I++ LCK +++DEA  LL  M+   + PD           C+
Sbjct: 278 FLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCK 337

Query: 125 I--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           +                    N+V Y  L+DGLCK   L  A  L   +   G+ PN  T
Sbjct: 338 LGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYT 397

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   I  LC   ++ K   LF  + VKG   +   +T ++    ++    + + +   M+
Sbjct: 398 YTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKME 457

Query: 225 KRNVMPYASILSIIV-DLLVKNE 246
               +P A    II+  LL K+E
Sbjct: 458 DNGCIPNAVTFEIIIRSLLEKDE 480



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 124/261 (47%), Gaps = 29/261 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNT+  NT++ GLC +G V K+     ++  +    + V+Y  L++G C   +   A  
Sbjct: 77  QPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIK 136

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
           L   + DR  + DVV ++ I+D LCK++ +DEA  L   M   G+ PD          FC
Sbjct: 137 LLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFC 196

Query: 124 --------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                 NI  Y  LID LCK GK+K ++ L   +T+ G+ P+VV
Sbjct: 197 LAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVV 256

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            Y+I +   C   ++ KA  +FL M   GV P+   +  ++    +     + + LLR M
Sbjct: 257 IYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREM 316

Query: 224 DKRNVMPYASILSIIVDLLVK 244
             +N++P     S ++D L K
Sbjct: 317 LHKNMIPDTVTYSSLIDGLCK 337



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +  I+  L K         L  QM+ + I P++VT + LI+ FC+      +  +
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  G Q + +  N +M  LC   ++ ++    D ++  G + D       V+YG L
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQ------VSYGIL 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCKIG+ + A +L +++      P+VV Y+  I  LC D+ +D+A+DL+ +M  +G+
Sbjct: 122 LNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGI 181

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ + +TTL+  F    +  +   LL  M  +N+ P     + ++D L K
Sbjct: 182 FPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCK 232



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 2/114 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  +PN  TY  +IDGLCK G + K + LF  +  +    +V TY  +I G C   
Sbjct: 387 KERGI--QPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEG 444

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
             +EA  +  +M D G   + VTF +I+  L +  + D+A +LL  MI  G+ P
Sbjct: 445 MFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           ++ F  I+  L K +       L   M   G+ PD      +V    LI+  C +G++  
Sbjct: 10  IIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPD------LVTLSILINCFCHLGQMAF 63

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           +  +   + + G  PN +  N  +  LC   ++ K+      +  +G   + V +  L+ 
Sbjct: 64  SFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLN 123

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              +  ET   I+LLR+++ R+  P   + S I+D L K+++
Sbjct: 124 GLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKL 165


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  +YN +I+G C+   +DKA  L  QM  + +  + VTYN+LIHG C+      A 
Sbjct: 426 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAI 485

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G   D+VT+ +++D LCKN  + EA  LL  +   G   DA    +I+ Y 
Sbjct: 486 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI--EGSNLDA----DILVYN 539

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             IDG+C+ G+L+ AR+L  +L+  GL P+V TYNI IH LC    +D+A+ LF  M+  
Sbjct: 540 IAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDEN 599

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G + +  I+ T++  F+R NET    +LL+ M         S  ++IV++L
Sbjct: 600 GCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEML 650



 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 124/235 (52%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN + YNTIID LCK+  V +A  LF +M  + I+P++ TYNSLIH  C   +     
Sbjct: 286 CRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVT 345

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM++  +  +VV F+ ++D LCK   +  A  ++D+MI+ GV PD      +V Y 
Sbjct: 346 TLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPD------VVTYT 399

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C   ++  A ++  ++   G +PNV +YNI I+  C  ++MDKA  L   M ++
Sbjct: 400 ALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ 459

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G+  + V + TL+            I L   M     +P      I++D L KN 
Sbjct: 460 GLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNH 514



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  T+NT+I GLC EG + +A  LF +   E   P+VVTY +L++G C   + + A 
Sbjct: 216 CQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAI 275

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+ +  + +V+ +N I+D LCK+R++ EA  L   MI  G+ PD F       Y 
Sbjct: 276 RLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIF------TYN 329

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC + + K+   L   +  + +MPNVV ++  + ALC +  +  AHD+   M  +
Sbjct: 330 SLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKR 389

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           GV P+ V +T LM     ++E  + +++  +M  +  +P     +I+++
Sbjct: 390 GVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILIN 438



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 121/244 (49%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+TV +  ++  + K         L  QM    I P+V T N LI+ 
Sbjct: 135 LSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINS 194

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+      A  +  +++  G Q D  TFN ++  LC   K+ EA  L D  I  G +PD
Sbjct: 195 FCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPD 254

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +V YG L++GLCK+G    A  L +S+ +    PNV+ YN  I +LC D Q+ +
Sbjct: 255 ------VVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 308

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF +M  KG++P+   + +L+ +     E   V  LL  M    +MP   + S +VD
Sbjct: 309 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 368

Query: 241 LLVK 244
            L K
Sbjct: 369 ALCK 372



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 6/184 (3%)

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
           + N  ++A   F  M+        V F  ++  + K +       L   M   G+ PD +
Sbjct: 127 HFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVY 186

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
             +NI     LI+  C + +L  A  +   L + G  P+  T+N  I  LC + ++ +A 
Sbjct: 187 -TLNI-----LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEAL 240

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF     +G  P+ V + TLM    +   TS  I LLRSM ++N  P     + I+D L
Sbjct: 241 HLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSL 300

Query: 243 VKNE 246
            K+ 
Sbjct: 301 CKDR 304


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 130/232 (56%), Gaps = 6/232 (2%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+ V Y++++DGLC+ G + +A E F +M+   I+ +V TYNSLIHG   A    E  + 
Sbjct: 1118 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWF 1177

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
               M+DRG   D  TF +++D LCK  K+ EA ++L+LM   G  PD      I+ Y  L
Sbjct: 1178 LNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPD------ILTYNTL 1231

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            ++GLC +G+L++A +L +SL   G+  NV +YNI I+  C D+++D+A   F +M  KG+
Sbjct: 1232 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGL 1291

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             P+ V + TL+ +  +        +L   M         S   +++D L KN
Sbjct: 1292 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 1343



 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            K N  +YN +I+G CK+  +D+A   F +M+ + + P+ VTYN+LI   C +     A+ 
Sbjct: 1257 KLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQK 1316

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            LF+EM   G    + T+ V++D LCKN  ++EA  L   + +   +P      NI  +  
Sbjct: 1317 LFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKP------NIEVFSI 1370

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            L+DG+C+ GKL+ A +    +++ GL P+ + YNI I+ LCN   + +A  L   ME KG
Sbjct: 1371 LLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKG 1430

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              P+ + F  ++ + +++NE  + I+LL  M  RN  P  ++ S+++
Sbjct: 1431 CLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 7/235 (2%)

Query: 10   VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
            V  +P+  T N +I   C    V     +F         P+ VT  +L+ G    N   +
Sbjct: 975  VGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPD 1034

Query: 70   AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            A  LF EM  +GL  D  T+ ++++ LCK RK   A +L + M +G  + D F       
Sbjct: 1035 AVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVF------T 1087

Query: 130  YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            YG +ID LCK G    A ++   +  AG++P+VV Y+  +  LC   ++ +A + F +ME
Sbjct: 1088 YGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEME 1147

Query: 190  VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +G++ +   + +L+    R     +V   L  M  R   P A   +I++D L K
Sbjct: 1148 GRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCK 1202



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 109/251 (43%), Gaps = 42/251 (16%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            +P+ VT  T++ G+  E  +  A +LF +M  + +  +  TY  LI+G C A     A  
Sbjct: 1013 EPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIK 1072

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            L  E M    + DV T+ +I+D LCK+    EA  +   MI  G+ PD      +V Y  
Sbjct: 1073 LH-EKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPD------VVVYSS 1125

Query: 133  LIDGLCKIGKLKNARE-------------------LSQSLTRAGLM-------------- 159
            L+DGLC+ G+LK A E                   L   L+RAGL               
Sbjct: 1126 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 1185

Query: 160  --PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
              P+  T+ I I  LC + ++ +A  +   M  KG  P+ + + TLM       +     
Sbjct: 1186 FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDAT 1245

Query: 218  ELLRSMDKRNV 228
            +L  S+  R +
Sbjct: 1246 KLFESLADRGI 1256



 Score = 41.6 bits (96), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            L+  + K+G       + + +   G+ P++ T NI IH  C+   +     +F     +G
Sbjct: 952  LLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRG 1011

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              P+ V  TTL+     +N     ++L   M K+ ++  A    I+++ L K
Sbjct: 1012 FEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCK 1063


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 134/263 (50%), Gaps = 29/263 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTY+TIID   K+  V++A ++F  MK + I+P++ TYNSLI G C  +   EA 
Sbjct: 234 CQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEAS 293

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            L  EM    +  D+VTFNV++D +CK  K+ EA  +L  M + GV PD           
Sbjct: 294 ALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGY 353

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C+ ++ +Y  LI+G CK+ ++  A++L   +   GL PN 
Sbjct: 354 SLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNN 413

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V+YN  IH LC    + +A +LF +M   G  PN   ++ L+  F ++    K   L R+
Sbjct: 414 VSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRA 473

Query: 223 MDKRNVMPYASILSIIVDLLVKN 245
           M      P   + +I++D + K+
Sbjct: 474 MQSTYSKPNLVMYNILIDAMCKS 496



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 131/231 (56%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N ++D +CKEG V +A+ +   M +  + P+VVTY+SL++G+   ++  EA  L
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL 365

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G + DV ++N++++  CK +++DEA +L + MI  G+ P      N V+Y  L
Sbjct: 366 FDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTP------NNVSYNTL 419

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC++G L+ AR L +++   G +PN+ TY+I +   C      KA  LF  M+    
Sbjct: 420 IHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYS 479

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V++  L+ +  +        +L   +  + + P A I + I++ L K
Sbjct: 480 KPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCK 530



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 116/212 (54%), Gaps = 6/212 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  +YN +I+G CK   +D+AK+LF +M  + + PN V+YN+LIHG C      EA 
Sbjct: 374 CKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREAR 433

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M   G   ++ T+++++D  CK     +A RL   M     +P      N+V Y 
Sbjct: 434 NLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKP------NLVMYN 487

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID +CK G L++AR+L   L   GL PN   Y   I+ LC +  +D+A + F +ME  
Sbjct: 488 ILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEED 547

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G  P+ + +  ++  F+   + S+ ++L+  M
Sbjct: 548 GCPPDEISYNVIIRGFLHHKDESRAVQLIGEM 579



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+ T+I+ LCK G   +A ELF  M      P+V TY ++I+G C   +   A  
Sbjct: 165 QPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAG 224

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M + G Q +VVT++ I+D   K+R+++EA  +   M   G+ PD F       Y  
Sbjct: 225 LLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIF------TYNS 278

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC   + K A  L   +    +MP++VT+N+ +  +C + ++ +A  +   M   G
Sbjct: 279 LIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMG 338

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V P+ V +++LM  +  ++E  +  +L  +M  +   P
Sbjct: 339 VEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKP 376



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEG-FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P  + +  ++  + K G + D    L  QM+   ++PN+ T + LI+ F +    + A  
Sbjct: 95  PCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFS 154

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++  GLQ  +VTF  +++ LCK  K  +A  L D M+  G RPD +       Y  
Sbjct: 155 VLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVY------TYTT 208

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCKIG+   A  L + +  AG  PNVVTY+  I +   D ++++A D+F  M+VKG
Sbjct: 209 IINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKG 268

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++P+   + +L+      ++  +   LL  M   N+MP     +++VD + K
Sbjct: 269 ISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICK 320



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 6/179 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V+YNT+I GLC+ G + +A+ LF  M      PN+ TY+ L+ GFC      +A  L
Sbjct: 411 PNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRL 470

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M     + ++V +N+++D +CK+  + +A +L   +   G++P+A        Y  +
Sbjct: 471 FRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNA------QIYTTI 524

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           I+GLCK G L  A E  +++   G  P+ ++YN+ I    + +   +A  L  +M  KG
Sbjct: 525 INGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKG 583



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY+ ++DG CK+G+  KA  LF  M+     PN+V YN LI   C + +  +A  L
Sbjct: 446 PNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKL 505

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E+  +GLQ +   +  I++ LCK   +DEA      M + G  PD       ++Y  +
Sbjct: 506 FSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE------ISYNVI 559

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           I G         A +L   +   G + +V T
Sbjct: 560 IRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 48/76 (63%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y TII+GLCKEG +D+A E F  M+++   P+ ++YN +I GF +  D + A  
Sbjct: 515 QPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQ 574

Query: 73  LFIEMMDRGLQSDVVT 88
           L  EM D+G  +DV T
Sbjct: 575 LIGEMRDKGFIADVGT 590



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V YN +ID +CK G +  A++LF ++  + + PN   Y ++I+G C     +EA  
Sbjct: 480 KPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALE 539

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            F  M + G   D +++NVI+     ++    A +L+  M   G   D
Sbjct: 540 AFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 132/263 (50%), Gaps = 29/263 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTY+T+ID LC++  V++A ++F  MK + I+P++ TY SLI G C  +   EA 
Sbjct: 229 CQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEAS 288

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            L  EM    +  D+VTFNV++D  CK  K+ EA  +L  M + GV P+           
Sbjct: 289 ALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGY 348

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C+ NI +Y  LI+G CK  ++  A +L   +   GL PN 
Sbjct: 349 SLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNN 408

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V+YN  IH  C   ++ +A DLF +M   G  P+   ++ L+  F ++    K   L R+
Sbjct: 409 VSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRA 468

Query: 223 MDKRNVMPYASILSIIVDLLVKN 245
           M    + P   + +I+V  + K+
Sbjct: 469 MQSTYLKPNLVMYTILVHAMCKS 491



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N ++D  CKEG V +A  +   M +  + PNVVTY+SL++G+    D  EA  L
Sbjct: 301 PDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKL 360

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G + ++ ++N++++  CK +++DEA +L + MI  G+ P      N V+Y  L
Sbjct: 361 FHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTP------NNVSYNTL 414

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C++GKL+ A++L +++   G +P++ TY+I +   C    + KA  LF  M+   +
Sbjct: 415 IHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYL 474

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V++T L+ +  +        +L   +  + + P+  + + I++ L K
Sbjct: 475 KPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCK 525



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 119/218 (54%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  +YN +I+G CK   +D+A +LF +M  + + PN V+YN+LIHGFC      EA+
Sbjct: 369 CKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQ 428

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M   G   D+ T+++++D  CK   + +A RL   M    ++P      N+V Y 
Sbjct: 429 DLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKP------NLVMYT 482

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+  +CK G  K+AR+L   L   GL P+V  Y   I+ LC +  +D+A + F +ME  
Sbjct: 483 ILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEAD 542

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  P+ + +  ++   ++  + S+ + L+  M  R  +
Sbjct: 543 GCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFI 580



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+ T+I+GLCK G   +A ELF  M  +   P+V TYN++I+G C   +   A  
Sbjct: 160 QPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAG 219

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M + G Q ++VT++ ++D LC++R ++EA  +   M   G+ PD F       Y  
Sbjct: 220 LLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIF------TYTS 273

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK  + K A  L   +T   +MP++VT+N+ +   C + ++ +A  +   M   G
Sbjct: 274 LIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMG 333

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V PN V +++LM  +    +  +  +L   M  +   P
Sbjct: 334 VEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKP 371



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEG-FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P  + +  ++  + K G + D    L  QM+   ++PN+ T +  ++ FC     +    
Sbjct: 90  PCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFS 149

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++  GLQ  +VTF  +++ LCK  +  +A  L D M+  G +PD +       Y  
Sbjct: 150 VLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVY------TYNT 203

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCKIG+   A  L + +  AG  PN+VTY+  I +LC D  +++A D+F  M+ KG
Sbjct: 204 IINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKG 263

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++P+   +T+L+    + +   +   LL  M   N+MP     +++VD   K
Sbjct: 264 ISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCK 315



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   Y TII+GLCKEG +D+A E F  M+ +   P+ ++YN +I G     D + A  
Sbjct: 510 QPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALL 569

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102
           L  EM DRG  +DV      + E+C+ +K+
Sbjct: 570 LVGEMRDRGFIADV---RPCLSEVCQGKKV 596



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F  M+ R     ++ F  ++  + K  +  D    L   M   G+ P      NI     
Sbjct: 80  FNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSP------NIYTLSI 133

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            ++  C++ ++     +   + + GL P +VT+   I+ LC   +  +A +LF DM  KG
Sbjct: 134 FMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKG 193

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             P+   + T++    +  ET+    LL+ M++    P     S ++D L ++ +   ++
Sbjct: 194 CQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEAL 253

Query: 253 PQFNRQK 259
             F+  K
Sbjct: 254 DIFSYMK 260



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y  ++  +CK G    A++LF ++  + + P+V  Y ++I+G C     +EA  
Sbjct: 475 KPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALE 534

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG----VRP 119
            F  M   G   D +++NVI+  L +++    A  L+  M   G    VRP
Sbjct: 535 AFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADVRP 585


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 1   MANGNREFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS 56
           +A   R F V+ +    PN VT+  +I G    G  +K   LF +M+   I PN+ TYN 
Sbjct: 54  VAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYNI 113

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L+  +C   +   A  LF EM  +G+  +VV++N ++  LC+ RKM +AT+LL+LM + G
Sbjct: 114 LVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQLLELMRREG 173

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +RP      ++V +  L+DG  K GK+ NA   S  +  AG  P+ VTYN  I   C   
Sbjct: 174 IRP------SVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRAR 227

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            M +A+  F DM+ +G+AP  V +T L+ +F R+N+  K  E+   M+K
Sbjct: 228 DMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEK 276



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V+YNT+I GLC+   +  A +L   M+ E I P+VVT+N L+ G+  A   + A +  
Sbjct: 142 NVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFS 201

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   G Q   VT+N ++   C+ R M  A R    M + G+ P        V Y  LI
Sbjct: 202 NQMRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTK------VTYTILI 255

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D   +   +  A E+   + +AGL  +V TY + +HALC +  M  A  LF  +  KG+ 
Sbjct: 256 DAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQ 315

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              VI+  L+  + R+  + K ++L+  M K+  +P ++   + + +L
Sbjct: 316 VGNVIYDMLIYGYGREGSSYKAMKLIMEMRKKGFVPNSASYGLTIRIL 363



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+N ++DG  K G +  A     QM+     P+ VTYN+LI GFC A D   A  
Sbjct: 175 RPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIRANR 234

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M +RGL    VT+ +++D   +   MD+A  +   M + G+      E+++  YG 
Sbjct: 235 AFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEKAGL------EVDVRTYGV 288

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  LC  G +K+AR+L QS+   GL    V Y++ I+    +    KA  L ++M  KG
Sbjct: 289 LVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSYKAMKLIMEMRKKG 348

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             PN   +   +       + S+   L+  M +  V    S+  ++++
Sbjct: 349 FVPNSASYGLTIRILCNDGKCSEAEALIDDMVRAGVQTSESVRQVLLN 396



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
             ++ G C+ G V +A+ +F  M    + PN VT+ +LIHG+       +   LF +M  
Sbjct: 42  TALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMRI 101

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G++ ++ T+N+++ E C+  + + A  L + M   G+        N+V+Y  LI GLC+
Sbjct: 102 GGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITR------NVVSYNTLIAGLCR 155

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
             K+K+A +L + + R G+ P+VVT+N+ +       +M  A      M + G  P+ V 
Sbjct: 156 YRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVT 215

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  L+  F R  +  +       M +R + P     +I++D   +
Sbjct: 216 YNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFAR 260



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           E    L L+ +G    D    +++ A   L+ G C+ G +  A+ +   + R GL PN V
Sbjct: 17  EVRSALALLARGAKAGD--TTLDVAACTALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEV 74

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T+   IH      + +K   LF  M + G+ PN   +  L+  + R  E  +   L   M
Sbjct: 75  TFTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEM 134

Query: 224 DK----RNVMPYASILS 236
                 RNV+ Y ++++
Sbjct: 135 PAKGITRNVVSYNTLIA 151


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 141/238 (59%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V Y+TIIDG+CK+  V+ A +L+ +M  + I+PNVVTY++LI GF       
Sbjct: 190 GNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLK 249

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M+   ++ DV TFN+++D  CK+ KM E   +  +M++ G++P      N+V
Sbjct: 250 DAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKP------NVV 303

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ +  ++++ G+ P++ +YNI I   C  +++D+A +LF +M
Sbjct: 304 TYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEM 363

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             K + P+ V + +L+    +  + S  ++L+  M  R V P     S I+D L KN 
Sbjct: 364 HHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNH 421



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 120/216 (55%), Gaps = 7/216 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +IDG CK   VD+A  LF +M  ++I P+VVTYNSLI G C     + A  L
Sbjct: 335 PDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKL 394

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG+  D++T++ I+D LCKN ++D+A  LL  +   G+RP      N+  Y  L
Sbjct: 395 VDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRP------NMYTYTIL 448

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+L++A  + + L   G    V TY + IH  CN    D+A  L   M+    
Sbjct: 449 IDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSC 508

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            P+ V +  ++ S   K+E  K  E LR M  R ++
Sbjct: 509 IPDAVTYEIIIRSLFDKDENDKA-EKLREMITRGLL 543



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY +++DG C    V+KAK +   M    +NP++ +YN LI GFC     +EA  
Sbjct: 299 KPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMN 358

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  + +  DVVT+N ++D LCK  K+  A +L+D M   GV PD      I+ Y  
Sbjct: 359 LFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPD------IITYSS 412

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D LCK  ++  A  L   L   G+ PN+ TY I I  LC   +++ AH++F D+ VKG
Sbjct: 413 ILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
                  +T ++  F  K    + + LL  M   + +P A    II+
Sbjct: 473 YNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIII 519



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 25/232 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N I+  L K         L  QM+ E INP       L H F + +        
Sbjct: 74  PPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINP------VLFH-FQHPH-------- 118

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++M  G   + +TF  ++  LC   ++ +A    D ++  G + D       V YG L
Sbjct: 119 --QLM--GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQ------VGYGTL 168

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK+G+ + A +L + +    + PNVV Y+  I  +C D+ ++ A DL+ +M  KG+
Sbjct: 169 IHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGI 228

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +PN V ++ L+  F    +    I+L   M   N+ P     +I+VD   K+
Sbjct: 229 SPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKD 280



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY  +IDGLCK G ++ A  +F  +  +  N  V TY  +IHGFC     +EA  
Sbjct: 439 RPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALA 498

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           L  +M D     D VT+ +I+  L    + D+A +L +++ +G
Sbjct: 499 LLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKLREMITRG 541



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 33/224 (14%)

Query: 31  FVDKAKELFLQMKDENIN--P------NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL 82
           FV K    F  +K+ + N  P      N + Y+S+   F   ND  +A  LF  ++ +  
Sbjct: 13  FVPKKFHSFQFLKNTHFNFIPYSSSKINFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNP 72

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142
               + FN I+  L K++       L   M   G+ P  F                    
Sbjct: 73  TPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLF-------------------H 113

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
            ++  +L       G  PN +T+   I  LC   Q+ +A     ++   G   + V + T
Sbjct: 114 FQHPHQL------MGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGT 167

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           L+    +  ET   ++LLR +D   V P   + S I+D + K++
Sbjct: 168 LIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDK 211


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y T+ID LCK G VD A+  F QM +E + PN+V + SL++G C  +   +A  L
Sbjct: 412 PNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGEL 471

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+++G+  +VV FN IM  LC   ++ +A RL+DLM + G RPD      I++Y  L
Sbjct: 472 FFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPD------IISYNAL 525

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C +GK   A +L   +   GL PN  TYN  +H  C D ++D A+ +F +M   G+
Sbjct: 526 IRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGI 585

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P  V + T++    +    S+  EL  +M            +II++ L KN
Sbjct: 586 TPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKN 637



 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 128/234 (54%), Gaps = 8/234 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V+YNT+I+G   EG VDKA  LFL M D+ I PNVVTY  +I G C A   + AE
Sbjct: 200 CPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAE 259

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+D+G++ ++VT+  ++       +  E  R+L  M   G+ PD F       YG
Sbjct: 260 GVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCF------TYG 313

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV- 190
            L+D LCK GK   AR+L  S+ R G+ P+V  Y I +H       + + H  FLD+ V 
Sbjct: 314 LLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHS-FLDLMVG 372

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G++PN  IF  +  +F +K    + +++   M ++ + P     + ++D L K
Sbjct: 373 NGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCK 426



 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 9/251 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGN 68
           C PN V+YNT++ G C E   ++A EL   M D  +    PN+V+YN++I+GF      +
Sbjct: 162 CTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVD 221

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF++M D+G+  +VVT+ +++D LCK + +D A  +   MI  GVRP      NIV
Sbjct: 222 KAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRP------NIV 275

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y CLI G   IG+ K    + + ++  GL P+  TY + +  LC   +  +A  LF  M
Sbjct: 276 TYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSM 335

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             KG+ P+  I+  ++  +  K   S++   L  M    + P   I +I+     K  + 
Sbjct: 336 IRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMI 395

Query: 249 LNSIPQFNRQK 259
             ++  FN+ +
Sbjct: 396 GEAMDIFNKMR 406



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 133/242 (54%), Gaps = 6/242 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TYNT++ G C++G +D A  +F +M    I P VVTYN+++HG       +EA+ 
Sbjct: 551 KPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKE 610

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M+  G Q  + T+N+I++ L KN  +DEA +    M Q     D   +++I+ +  
Sbjct: 611 LYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALK----MFQSLCSKDL--QVDIITFNI 664

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K G+ ++A  L  +++  GL+P+V TY +    L  +  +++   +F +ME  G
Sbjct: 665 MIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSG 724

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
            APN ++   L+   + + + S+    L  +D++N    AS  S+++ L  + E    S+
Sbjct: 725 CAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFSREEHQAKSL 784

Query: 253 PQ 254
           P+
Sbjct: 785 PE 786



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 118/252 (46%), Gaps = 41/252 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +IDGLCK   VD+A+ +F QM D+ + PN+VTY  LIHG+       E   +
Sbjct: 237 PNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRM 296

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GL+ D  T+ +++D LCK  K  EA +L D MI+ G++PD      +  YG +
Sbjct: 297 LKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPD------VSIYGII 350

Query: 134 IDGLCKIGKLK-----------------------------------NARELSQSLTRAGL 158
           + G    G L                                     A ++   + + GL
Sbjct: 351 LHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGL 410

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            PNVV Y   I ALC   ++D A   F  M  +GVAPN V+FT+L+      ++  K  E
Sbjct: 411 SPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGE 470

Query: 219 LLRSMDKRNVMP 230
           L   M  + + P
Sbjct: 471 LFFEMVNQGIHP 482



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 49/264 (18%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG----- 67
           +P+  TY  ++D LCK+G   +A++LF  M  + I P+V  Y  ++HG  YA  G     
Sbjct: 306 EPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHG--YATKGALSEM 363

Query: 68  --------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDE 95
                                            EA  +F +M  +GL  +VV +  ++D 
Sbjct: 364 HSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDA 423

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           LCK  ++D+A    + MI  GV P      NIV +  L+ GLC I K + A EL   +  
Sbjct: 424 LCKLGRVDDAELKFNQMINEGVAP------NIVVFTSLVYGLCTIDKWEKAGELFFEMVN 477

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI---RKNE 212
            G+ PNVV +N  +  LC + ++ KA  L   ME  G  P+ + +  L+       + +E
Sbjct: 478 QGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDE 537

Query: 213 TSKVIELLRSMD-KRNVMPYASIL 235
            SK+++++ S+  K N   Y ++L
Sbjct: 538 ASKLLDIMLSVGLKPNECTYNTLL 561


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 130/232 (56%), Gaps = 6/232 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VT +T+IDGLCK   +D A++L  +M+     P+VV Y  LIHGFC A+  +++   F
Sbjct: 480 DVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFF 539

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+D+G    V+T+++++D+LCK+ ++ +   LL  M++ GV PDA      + Y  +I
Sbjct: 540 SEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDA------IVYTSVI 593

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK      A EL + + + G  P VVTYN+ +  LC   ++D+A  L   ME  G  
Sbjct: 594 DGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCL 653

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           P+ V + ++   F +  E  K   L ++M  R   P   + S+++  LV  E
Sbjct: 654 PDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEE 705



 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  T+N +ID  CK G +D A ELF  M D    P++ TYN +I G C AN  ++A 
Sbjct: 372 CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDAR 431

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M + G   DVVT+N I+  LCK  ++DEA  + +++  GG        +++V   
Sbjct: 432 QLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYF------LDVVTCS 485

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK  +L +A +L + + R G  P+VV Y I IH  C  +Q+DK+   F +M  K
Sbjct: 486 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 545

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  P  + ++ ++    +         LL++M +R V P A + + ++D L K++
Sbjct: 546 GCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSD 600



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 64/298 (21%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I+G CK G +D+A  LF QM + + +P+V TYN LI G+C      +  
Sbjct: 267 CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGA 326

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAF 122
            L  EM+  G + + +T+N +MD L K+ K  +A  L  +M++   +P         D F
Sbjct: 327 KLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMF 386

Query: 123 CEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C++                    +I  Y  +I G C+  ++ +AR+L + +T AG  P+V
Sbjct: 387 CKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDV 446

Query: 163 VTYNITIHALCNDEQMDKAHDL---------FLD-------------------------- 187
           VTYN  +  LC   Q+D+A+++         FLD                          
Sbjct: 447 VTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLRE 506

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           ME  G AP+ V +T L+  F + ++  K +     M  +  +P     SI++D L K+
Sbjct: 507 MERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKS 564



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYN +I G C+   +D A++L  +M +    P+VVTYNS++ G C A+  +EA 
Sbjct: 407 CLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAY 466

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++  + + G   DVVT + ++D LCK+R++D+A +LL  M + G  PD      +VAY 
Sbjct: 467 EVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPD------VVAYT 520

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G CK  +L  +      +   G +P V+TY+I I  LC   ++     L   M  +
Sbjct: 521 ILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLER 580

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           GV P+ +++T+++    + +   +  EL + M +    P     +++VD L K
Sbjct: 581 GVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCK 633



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY  ++D LCK   +  A  +   M +    PNVVTYN+LI+GFC   + +EA 
Sbjct: 232 CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAV 291

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M++     DV T+N+++D  CK  +  +  +LL  M++ G      CE N + Y 
Sbjct: 292 VLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYG------CEPNFITYN 345

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D L K GK  +A  L+Q + R    P+  T+N+ I   C   Q+D A++LF  M  +
Sbjct: 346 TLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDR 405

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           G  P+   +  ++    R N      +LL  M +    P    Y SI+S
Sbjct: 406 GCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVS 454



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 119/234 (50%), Gaps = 7/234 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C P+++TY+T+I+G CK     +A  L  +M+   I P+   YN++I G C  N   ++
Sbjct: 162 LCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLC-DNGRVDS 220

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +    M R     V+T+ +++D LCK+ ++ +A+ +L+ MI+ G  P      N+V Y
Sbjct: 221 ALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAP------NVVTY 274

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI+G CK+G +  A  L   +      P+V TYNI I   C  E+      L  +M  
Sbjct: 275 NTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVK 334

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G  PN + + TLM S ++  +      L + M +R+  P     ++++D+  K
Sbjct: 335 YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK 388



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  +TY+ +ID LCK   V     L   M +  + P+ + Y S+I G C ++  +EA 
Sbjct: 547 CVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAY 606

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+  M   G    VVT+NV++D+LCK  ++DEA  LL++M   G  PD       V Y 
Sbjct: 607 ELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDT------VTYN 660

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            + DG  K  +   A  L Q++   G  P    Y++ +  L  +E+MD+A +++
Sbjct: 661 SVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIW 714



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  T N ++    ++    +A +LF   +    +P+ +TY++LI+GFC A D  +A  
Sbjct: 129 KHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYR 188

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  RG+      +N I+  LC N ++D A      M +        C  +++ Y  
Sbjct: 189 LLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN-------CAPSVITYTI 241

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D LCK  ++ +A  + + +  AG  PNVVTYN  I+  C    MD+A  LF  M    
Sbjct: 242 LVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS 301

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +P+   +  L+  + ++       +LL+ M K    P     + ++D LVK+
Sbjct: 302 CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKS 354



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 7/194 (3%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           T N L+  F       EA  LF          D +T++ +++  CK R   +A RLLD M
Sbjct: 134 TCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEM 193

Query: 113 IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            + G+ P      +   Y  +I GLC  G++ +A    + + R    P+V+TY I + AL
Sbjct: 194 EKRGIVP------HNAVYNTIIKGLCDNGRVDSALVHYRDMQR-NCAPSVITYTILVDAL 246

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           C   ++  A  +  DM   G APN V + TL+  F +     + + L   M + +  P  
Sbjct: 247 CKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDV 306

Query: 233 SILSIIVDLLVKNE 246
              +I++D   K E
Sbjct: 307 FTYNILIDGYCKQE 320



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 58/109 (53%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VTYN ++D LCK   +D+A  L   M+ +   P+ VTYNS+  GF  + + ++A 
Sbjct: 617 CAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAF 676

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            LF  M  RG       +++++ +L    KMD+A  + +  ++ G   D
Sbjct: 677 RLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVD 725


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 143/239 (59%), Gaps = 8/239 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V YNTIID +CK   V++A +L+ +M  + I+P+VVTY++LI GFC     N
Sbjct: 189 GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLN 248

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M+   +  DV TF++++D  CK  ++ EA  +L +M++ G++PD      +V
Sbjct: 249 DAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPD------VV 302

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ +  ++ + G+  NV +YNI I+  C  +++D+A +LF +M
Sbjct: 303 TYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEM 362

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI-LSIIVDLLVKNE 246
             K + P+ V + +L+    +  + S  ++L+  M  R V P+  I  + I+D L KN 
Sbjct: 363 HCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGV-PHDKITYNSILDALCKNH 420



 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 121/215 (56%), Gaps = 6/215 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN +I+G CK   VD+A  LF +M  +NI P+VVTYNSLI G C +   + A  L 
Sbjct: 335 NVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLV 394

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM DRG+  D +T+N I+D LCKN ++D+A  LL  M   G++PD +       Y  LI
Sbjct: 395 DEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMY------TYTILI 448

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK G+LK+A+ + + L   G    V TY + I   C+++  DKA  L   ME  G  
Sbjct: 449 DGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCI 508

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           PN   +  ++ S   K+E     +LLR M  R ++
Sbjct: 509 PNAKTYEIIILSLFEKDENDMAEKLLREMIARGLL 543



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 111/191 (58%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T++ ++DG CKEG V +AK +   M  + I P+VVTY SL+ G+C     N+A+ +
Sbjct: 264 PDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSI 323

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G+ ++V ++N++++  CK +K+DEA  L   M    + PD      +V Y  L
Sbjct: 324 FNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPD------VVTYNSL 377

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK GK+  A +L   +   G+  + +TYN  + ALC + Q+DKA  L   M+ +G+
Sbjct: 378 IDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGI 437

Query: 194 APNCVIFTTLM 204
            P+   +T L+
Sbjct: 438 QPDMYTYTILI 448



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 122/235 (51%), Gaps = 7/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY +++DG C    V+KAK +F  M    +  NV +YN +I+GFC     +EA  
Sbjct: 298 KPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMN 357

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  + +  DVVT+N ++D LCK+ K+  A +L+D M   GV  D       + Y  
Sbjct: 358 LFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDK------ITYNS 411

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D LCK  ++  A  L   +   G+ P++ TY I I  LC   ++  A ++F D+ VKG
Sbjct: 412 ILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKG 471

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNE 246
                  +T ++  F   +   K + LL  M+    +P A    II+  L  K+E
Sbjct: 472 YNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDE 526



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 8/181 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN++IDGLCK G +  A +L  +M D  +  + +TYNS++   C  +  ++A  L
Sbjct: 369 PDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIAL 428

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             +M D G+Q D+ T+ +++D LCK  ++ +A  +  DL+++G         I +  Y  
Sbjct: 429 LTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKG-------YNITVYTYTV 481

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C       A  L   +   G +PN  TY I I +L   ++ D A  L  +M  +G
Sbjct: 482 MIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARG 541

Query: 193 V 193
           +
Sbjct: 542 L 542



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   +   P    +  I+  L K      A  L  +M+   I  ++VT+N LI+ F   
Sbjct: 45  NRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQL 104

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              + +  +F  ++ +G + + +T   ++  LC   ++ +A    D ++  G        
Sbjct: 105 GHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFH------ 158

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +N V YG LI+GLCK+G+   A +L + +    + PNVV YN  I ++C  + +++A DL
Sbjct: 159 LNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDL 218

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + +M  KG++P+ V ++ L+  F    + +  I L   M    + P     SI+VD   K
Sbjct: 219 YSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCK 278



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY  +IDGLCK G +  A+ +F  +  +  N  V TY  +I GFC  +  ++A  
Sbjct: 438 QPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALA 497

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV---RPDAFC 123
           L  +M D G   +  T+ +I+  L +  + D A +LL  MI  G+      A+C
Sbjct: 498 LLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLLFGWKKAYC 551



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 8/199 (4%)

Query: 48  NPNVVTYNSLIHGFCYANDGNEAEYL--FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           NP  +   SL     + +  +E   +  F  +++      +  F  I+  L K      A
Sbjct: 16  NPKFIISTSLYSQLHHHHQDDEHSLVSSFNRILNINPTPPIFEFGKILGSLVKINCYQTA 75

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
             L   M   G+  D      +V +  LI+   ++G    +  +  ++ + G  PN +T 
Sbjct: 76  ISLHREMEFNGIASD------LVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITL 129

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
              I  LC   Q+ +A      +   G   N V + TL+    +  +TS  ++LLR +D 
Sbjct: 130 TTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDG 189

Query: 226 RNVMPYASILSIIVDLLVK 244
           + V P   + + I+D + K
Sbjct: 190 KLVQPNVVMYNTIIDSMCK 208


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 160/345 (46%), Gaps = 99/345 (28%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN----- 55
           M NG   + + CKPN  +YN IID LCK G   +AK LF +M D+ + P+VVT++     
Sbjct: 222 MLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDT 281

Query: 56  ------------------------------SLIHGFCYANDGNEAEYLFIEMMDRGLQSD 85
                                         SLI GFC   D + A+ LF+ M  +G + D
Sbjct: 282 LCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPD 341

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQ------------------------------G 115
           V+++ V++   CK   ++EA +L + M++                              G
Sbjct: 342 VISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFG 401

Query: 116 GVRP--------------DAFCE--------------------INIVAYGCLIDGLCKIG 141
            V+P              D  C+                    ++I ++ CLIDGLCK  
Sbjct: 402 VVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKAR 461

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           KL+ A EL + L++ GL P+VVTY I I+  C + Q+D A+ LF  ME  G  PN + ++
Sbjct: 462 KLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYS 521

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            L+  F + N+  +V++LL  M +++V   ASI +I+ D++ K+E
Sbjct: 522 ALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDE 566



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 129/254 (50%), Gaps = 12/254 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE------NINPNVVTYNSLIHGFCYAN 65
           C PN VTY T+I GLC+ G ++ A +L  +M +       N  PN+ +YN +I   C   
Sbjct: 192 CWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIG 251

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA+ LF EM+D+G++ DVVTF+ ++D LCK   + EA + L+ M+  G+ PD F   
Sbjct: 252 KWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLF--- 308

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               +  LI+G C +G L +A+EL  S+   G  P+V++Y + I+  C    +++A  L+
Sbjct: 309 ---TFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLY 365

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M   G  P+   F  L+       +     +L   +    V     I S+ +D L KN
Sbjct: 366 NEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKN 425

Query: 246 EISLNSIPQFNRQK 259
                ++  FN  K
Sbjct: 426 GCLFEAMELFNELK 439



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 106/217 (48%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T N +I+ LC    V +       +      P+VVTY SLI G C  +  +EA  L
Sbjct: 124 PNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRL 183

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           FI M   G   +VVT+  ++  LC+   ++ A +L   M+ G       C+ NI +Y  +
Sbjct: 184 FIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNII 243

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCKIGK K A+ L   +   G+ P+VVT++  I  LC +  + +A      M ++G+
Sbjct: 244 IDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGI 303

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+   FT+L+  F    +     EL  SM  +   P
Sbjct: 304 VPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEP 340



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 12/220 (5%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +++N ++  L K     +   L+ +M    ++PN  T N LI+  C  N   E       
Sbjct: 92  ISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAG 151

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           +M RG   DVVT+  ++  LC   ++ EATRL   M + G  P      N+V YG LI G
Sbjct: 152 IMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWP------NVVTYGTLIKG 205

Query: 137 LCKIGKLKNARELSQSLTRA------GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           LC+ G +  A +L Q +            PN+ +YNI I  LC   +  +A  LF +M  
Sbjct: 206 LCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVD 265

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +GV P+ V F+ L+ +  ++    +  + L +M  R ++P
Sbjct: 266 QGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVP 305



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 12/196 (6%)

Query: 1   MANGNREFGVVCKPNTVTYNTII-----DGLCKEGFVDKAKELFLQMKDENINPNVVTYN 55
           + +  + FGVV KP+ V  N  I     DGLCK G + +A ELF ++K  N+  ++ ++N
Sbjct: 393 VGDAKKLFGVV-KPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFN 451

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
            LI G C A     A  LF ++   GLQ DVVT+ ++++  CKN ++D A  L  +M + 
Sbjct: 452 CLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEEN 511

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G  P      N++ Y  L+ G  K  KL+   +L   + +  +      Y I    +  D
Sbjct: 512 GCTP------NLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKD 565

Query: 176 EQMDKAHDLFLDMEVK 191
           E+  +  D+     V+
Sbjct: 566 EKCREWLDILQRFPVQ 581



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           +A +  DLM++           +I+++  L+  L KI        L + +  AGL PN  
Sbjct: 79  QALQFFDLMMR-----------SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFF 127

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T NI I+ LCN  ++ +       +  +G  P+ V +T+L+     ++  S+   L   M
Sbjct: 128 TLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRM 187

Query: 224 DKRNVMP 230
            K    P
Sbjct: 188 QKLGCWP 194


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 138/234 (58%), Gaps = 8/234 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV  +P+ VT+NT+++GLCK G ++ A+++F +M  E + P+ V+YN+L+ G+C A 
Sbjct: 217 REGGV--RPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAG 274

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EA  +F EM  +G+  DVVTF  ++  +C+   ++ A  L+  M + G+R + F   
Sbjct: 275 CLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEF--- 331

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               +  LIDG C+ G L +A    + +    + P+VV YN+ I+  C   +MD+A +L 
Sbjct: 332 ---TFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELI 388

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +ME KG+ P+ V ++T++  + +  +T    EL R M K+ V+P A   S ++
Sbjct: 389 HEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLI 442



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 41/267 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT++ G CK G + +A  +F +M  + + P+VVT+ SLIH  C A +   A  L
Sbjct: 258 PDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVAL 317

Query: 74  FIEMMDRGL-----------------------------------QSDVVTFNVIMDELCK 98
             +M +RGL                                   Q  VV +NV+++  CK
Sbjct: 318 VGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCK 377

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             +MDEA  L+  M   G++PD      +V Y  ++ G CKIG   +A EL++ + + G+
Sbjct: 378 LGRMDEARELIHEMEAKGMKPD------VVTYSTILSGYCKIGDTDSAFELNRKMLKKGV 431

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +P+ +TY+  I  LC + ++  A +LF  M   G+ P+   +TTL+    ++    K + 
Sbjct: 432 VPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALS 491

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKN 245
           L   M K+ V+P     S+++D L K+
Sbjct: 492 LHDEMIKKGVLPDVVTYSVLIDGLSKS 518



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 123/217 (56%), Gaps = 7/217 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YN +I+G CK G +D+A+EL  +M+ + + P+VVTY++++ G+C   D + A  
Sbjct: 362 QPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFE 421

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ +G+  D +T++ ++  LC+ R++ +A  L + M+Q G++PD F       Y  
Sbjct: 422 LNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEF------TYTT 475

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G ++ A  L   + + G++P+VVTY++ I  L    +  +A  L   +  + 
Sbjct: 476 LIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYED 535

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P+ + +  LM    R  E   V+ LL+    + +M
Sbjct: 536 PVPDNIKYEALMHC-CRTAEFKSVVALLKGFSMKGLM 571



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           PN  TYN ++  LC  G  ++A  +    M+     PNVVTYN+L+  FC A + + AE 
Sbjct: 152 PNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAER 211

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M + G++  +VTFN +++ LCK  +M++A ++ D M + G+ PD       V+Y  
Sbjct: 212 LVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDG------VSYNT 265

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G CK G L  A  +   + + G++P+VVT+   IHA+C    +++A  L   M  +G
Sbjct: 266 LVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERG 325

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +  N   FT L+  F R       +  ++ M +  + P     +++++
Sbjct: 326 LRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLIN 373



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  + N  T+  +IDG C+ GF+D A     +M++  I P+VV YN LI+G+C   
Sbjct: 322 RERGL--RMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLG 379

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EA  L  EM  +G++ DVVT++ I+   CK    D A  L   M++ GV PDA    
Sbjct: 380 RMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDA---- 435

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             + Y  LI GLC+  +L +A EL + + + GL P+  TY   I   C +  + KA  L 
Sbjct: 436 --ITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLH 493

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +M  KGV P+ V ++ L+    +   T +   LL  +   + +P
Sbjct: 494 DEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVP 538



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 12/235 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + YN ++  L  +  +  A+ L   M  + + PNV TYN L+   C    G   E L
Sbjct: 118 PSLLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRALC--ARGQREEAL 174

Query: 74  FI---EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            +   +M   G   +VVT+N ++   C+  ++D A RL+ +M +GGVRP      ++V +
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRP------SLVTF 228

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +++GLCK G++++AR++   + R GL P+ V+YN  +   C    + +A  +F +M  
Sbjct: 229 NTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQ 288

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           KGV P+ V FT+L+ +  R     + + L+  M +R +       + ++D   +N
Sbjct: 289 KGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRN 343



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 101/251 (40%), Gaps = 56/251 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY+TI+ G CK G  D A EL  +M  + + P+ +TY+SLI G C      +A  
Sbjct: 397 KPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACE 456

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M+  GLQ D  T+  ++D  CK   + +A  L D MI+ GV PD      +V Y  
Sbjct: 457 LFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPD------VVTYSV 510

Query: 133 LIDGL----------------------------------CKIGKLKNARELSQSLTRAGL 158
           LIDGL                                  C+  + K+   L +  +  GL
Sbjct: 511 LIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGL 570

Query: 159 MPNV----------------VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           M                     Y++ IH  C    + KA      +   G +PN     +
Sbjct: 571 MNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTIS 630

Query: 203 LMPSFIRKNET 213
           L+     +  T
Sbjct: 631 LVRGLFEEGMT 641


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 128/216 (59%), Gaps = 6/216 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TYN +ID LC +G +D+A  +  QM+      +V+TYN+LI GFC AN   EAE
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAE 490

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM   G+  + VT+N ++D LCK+R++++A++L+D MI  G +PD F       Y 
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKF------TYN 544

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G +K A ++ Q++T  G  P++VTY   I  LC   +++ A  L   +++K
Sbjct: 545 SLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMK 604

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           G+A     +  ++    RK +T++ I L R M ++N
Sbjct: 605 GIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQN 640



 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNTVTYNT+I  LCKE  V++A EL   +  + I P+V T+NSLI G C   +   A 
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G + D  T+N+++D LC   K+DEA  +L  M   G      C  +++ Y 
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG------CARSVITYN 474

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK  K++ A E+   +   G+  N VTYN  I  LC   +++ A  L   M ++
Sbjct: 475 TLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIME 534

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           G  P+   + +L+  F R  +  K  +++++M      P    Y +++S
Sbjct: 535 GQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+NT+++GLCK G V  A E+   M  E  +P+V TYNS+I G C   +  EA   
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEF 352

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ R    + VT+N ++  LCK  +++EAT L  ++   G+ PD      +  +  L
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD------VCTFNSL 406

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC     + A EL + +   G  P+  TYN+ I +LC+  ++D+A ++   ME+ G 
Sbjct: 407 IQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGC 466

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           A + + + TL+  F + N+  +  E+   M+   V   +   + ++D L K+
Sbjct: 467 ARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKS 518



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 32/254 (12%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG+  KP+T  YN +++ L     +   +    +M    I P+V T+N LI   C A+ 
Sbjct: 147 DFGL--KPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQ 204

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG---------V 117
              A  +  +M   GL  D  TF  IM    +   +D A R+ + M++ G         V
Sbjct: 205 LRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264

Query: 118 RPDAFCE-------INIV--------------AYGCLIDGLCKIGKLKNARELSQSLTRA 156
               FC+       +N +               +  L++GLCK G +K+A E+   + + 
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE 324

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+V TYN  I  LC   ++ +A +    M  +  +PN V + TL+ +  ++N+  + 
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384

Query: 217 IELLRSMDKRNVMP 230
            EL R +  + ++P
Sbjct: 385 TELARVLTSKGILP 398


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY+T+I G C  G +  A  L  +M  +NINPNV TYN LI   C      EA+ L
Sbjct: 238 PNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKL 297

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G  +DVVT+N ++D LCK++ +D+AT L   M + G++P+ +       Y  L
Sbjct: 298 LAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKY------TYTAL 351

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+LKNA++L Q L   G   +V TYN+ I  LC +   DKA  +   ME  G 
Sbjct: 352 IDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGC 411

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN V F  ++ S   K+E  K  +LL  M  + ++
Sbjct: 412 IPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGLL 447



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   V   P  + +  I+  L K      A  L  QM+ + I PN+VT N LI+ FC+ 
Sbjct: 54  NRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHL 113

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                +  +  +++  G Q D +T N +M  LC   ++  +    D ++  G       +
Sbjct: 114 GQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGF------Q 167

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +N V+YG L++GLCKIG+ + A +L + +      P+VV Y+  I  LC D+ +++A+D 
Sbjct: 168 MNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDF 227

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +M  +G+ PN + ++TL+  F    +      LL  M  +N+ P     +I++D L K
Sbjct: 228 FSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCK 287



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 2/112 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +++G+  +PN  TY  +IDGLCK G +  A++LF  +  +    +V TYN +I G C   
Sbjct: 337 KKWGI--QPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEG 394

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
             ++A  +  +M D G   + VTF++I+  L +  + D+A +LL  MI  G+
Sbjct: 395 MFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGL 446



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           ++ F  I+  L K +    A  L   M   G+ P      N+V    LI+  C +G++  
Sbjct: 65  IIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEP------NLVTLNILINCFCHLGQMAF 118

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           +  +   + + G  P+ +T N  +  LC   ++ ++      +  +G   N V + TL+ 
Sbjct: 119 SFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLN 178

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              +  ET   ++LLR ++ R+  P   + S I+D L K++I
Sbjct: 179 GLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKI 220


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 136/259 (52%), Gaps = 15/259 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G  C+PN VTYN++IDGLCK    D+A+ELF  MK    +P++VTYN+L+ G     
Sbjct: 106 RDHG--CEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTG 163

Query: 66  DGNEAEYLFIEMMDRG-------LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
               A  LF EM+DR           +V+T++V++D LCK  ++ +A  LL+ M   G  
Sbjct: 164 KLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCS 223

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           PD      ++ Y  L+DGLCK  K+  A E+ + +  AG +PN+VTYN  +H LC   ++
Sbjct: 224 PD------VITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRV 277

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
             A  L  DM  +G  PN V + TL+    +         +L  M  +   P   I +++
Sbjct: 278 SDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNML 337

Query: 239 VDLLVKNEISLNSIPQFNR 257
           ++ L K +    SI    R
Sbjct: 338 INGLCKADQVDESIALLRR 356



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TY+ +IDGLCK   V +A EL   MK    +P+V+TY  L+ G C  +    A 
Sbjct: 187 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 246

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM+D G   ++VT+N ++  LC+ R++ +A  L+  M   G  P      N+V YG
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTP------NVVTYG 300

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK+G++K+A  +   +   G  P+++ YN+ I+ LC  +Q+D++  L       
Sbjct: 301 TLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSG 360

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P+ V +++++    R N   +   LL  +  R   P   + S ++D L K
Sbjct: 361 GIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 413



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY  ++DGLCKE  V  A E+  +M D    PN+VTYNSL+HG C A   ++A 
Sbjct: 222 CSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDAL 281

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M  RG   +VVT+  ++D LCK  ++ +A  +L  MI  G  PD      ++ Y 
Sbjct: 282 ALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD------LMIYN 335

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK  ++  +  L +     G+ P+VVTY+  I+ LC   ++D+A  L L ++ +
Sbjct: 336 MLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSR 395

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ ++++TL+    +  +  +  +L   M            S ++D L K
Sbjct: 396 GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCK 448



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 1/231 (0%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TV Y  ++ GL KE  +D+A  +  +M+D    PNVVTYNSLI G C  N+ + A+ LF
Sbjct: 78  DTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELF 137

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-DAFCEINIVAYGCL 133
             M        +VT+N ++D L +  K++ A  L   M+       D  C  N++ Y  L
Sbjct: 138 EHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVL 197

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  ++  A EL +S+   G  P+V+TY I +  LC + ++  A ++  +M   G 
Sbjct: 198 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 257

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V + +L+    R    S  + L+R M  R   P       ++D L K
Sbjct: 258 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 308



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + YN +I+GLCK   VD++  L  +     I P+VVTY+S+I+G C +N  +EA  L
Sbjct: 329 PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRL 388

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            + +  RG   DV+ ++ ++D LCK  K+DEA  L ++M   G      C+ ++V Y  L
Sbjct: 389 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDG------CDADVVTYSTL 442

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G++  A  L   + R G  P+ +TYN  I  LC+   +D+A +L  +ME    
Sbjct: 443 IDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNC 502

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           AP+ V +  L+    R       + LL     R V    + L  I 
Sbjct: 503 APSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIA 548



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 130/239 (54%), Gaps = 11/239 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY+++I GLC+   +D+A  L L +K     P+V+ Y++LI G C A   +EA  
Sbjct: 363 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 422

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+  M   G  +DVVT++ ++D LCK  ++DEA  LL  M++ G  P      + + Y  
Sbjct: 423 LYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPP------STMTYNS 476

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK- 191
           LI GLC +  L  A EL + + R+   P+ VTYNI IH +C  E++D A  L    + + 
Sbjct: 477 LIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARC 536

Query: 192 ----GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               G A + + +++L+    +    ++ ++  + M    V+P     SI+++ L K++
Sbjct: 537 VAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSK 595



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 13/243 (5%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C+P+  TY  ++ G C+ G +D+A+  F +M+ +N+ PNV   + LI G C A    +A
Sbjct: 4   ICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDA 63

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              F  M   G+ +D V +  ++  L K +++D+A  +L  M   G      CE N+V Y
Sbjct: 64  LRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHG------CEPNVVTY 117

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDGLCK  +   A+EL + +      P++VTYN  +  L    ++++A  LF +M  
Sbjct: 118 NSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLD 177

Query: 191 K-------GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +         +PN + ++ L+    + N  S+ +ELL SM  R   P     +I+VD L 
Sbjct: 178 RRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLC 237

Query: 244 KNE 246
           K  
Sbjct: 238 KES 240



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 5/182 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTY+T+IDGLCK G VD+A  L  +M      P+ +TYNSLI G C  N  +EA 
Sbjct: 432 CDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAI 491

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--CEINIVA 129
            L  EM         VT+N+++  +C+  ++D A  LL+   Q   R  A     ++ +A
Sbjct: 492 ELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLE---QAKARCVAAGGTALDTIA 548

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LIDGLCK G++  A +  Q +   G++P+ +TY+I +  L   + + +   L LD  
Sbjct: 549 YSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQM 608

Query: 190 VK 191
           V+
Sbjct: 609 VQ 610



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 11/214 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ + Y+T+IDGLCK G VD+A +L+  M  +  + +VVTY++LI G C A   +EA 
Sbjct: 397 CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAH 456

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+  G     +T+N ++  LC    +DEA  L++ M +    P A      V Y 
Sbjct: 457 LLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSA------VTYN 510

Query: 132 CLIDGLCKIGKLKNAREL-----SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            LI G+C++ ++ +A  L     ++ +   G   + + Y+  I  LC   ++ +A D F 
Sbjct: 511 ILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQ 570

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +M   GV P+ + ++ L+    +  +  ++  L+
Sbjct: 571 EMIDNGVIPDHITYSILLEGLKKSKDLHELRHLV 604


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVT+N+I+DGLCK G  ++A  L   M + N  P+  TYN+LI G C   + + A+ L
Sbjct: 43  PDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTL 102

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E +  G   DVVT++++ D LCK  ++DEA  L+  M   G  P      N+V Y  L
Sbjct: 103 VDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTP------NLVTYNTL 156

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  K + A EL ++L  +G +P+VVTY I +  LC + ++DKA  +   M  +G 
Sbjct: 157 IDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGC 216

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
            P+ + +T LM    R     +   + + M  +    + + Y S++
Sbjct: 217 TPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLV 262



 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN +IDGLCK    DKA E+  +M D  + P+ VT+NS++ G C A     A  L
Sbjct: 8   PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M +R  +    T+N ++  LCK + +D A  L+D  +  G  PD      +V Y  L
Sbjct: 68  LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPD------VVTYSIL 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            DGLCK G++  A EL + ++  G  PN+VTYN  I  LC   + +KA++L   +   G 
Sbjct: 122 ADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGF 181

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+ V +T ++    ++    K ++++  M KR   P     + +++ L + 
Sbjct: 182 VPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRT 233



 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 16/245 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TYNT+I GLCK+  VD+AK L  +       P+VVTY+ L  G C     +EA 
Sbjct: 76  CRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAF 135

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM   G   ++VT+N ++D LCK  K ++A  LL+ ++  G  PD      +V Y 
Sbjct: 136 ELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPD------VVTYT 189

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DGLCK G+L  A ++ + + + G  P+V+TY   +  LC   ++D+AH +F +M  K
Sbjct: 190 IIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK 249

Query: 192 GVAPNCVIFTTLMPSFI---RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
               + + + +L+  +    R  E  KV++ +R        PY  + + ++D   K E  
Sbjct: 250 DCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG------TPYIDVYNALMDGYCK-EGR 302

Query: 249 LNSIP 253
           L+ IP
Sbjct: 303 LDEIP 307



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 6/203 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M +  + P+V TYN LI G C A+  ++A  +  EM+DRG+  D VTFN IMD LCK  K
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
            + A  LL +M +   RP      +   Y  LI GLCK   +  A+ L      +G +P+
Sbjct: 61  FERAHSLLAVMAERNCRP------SCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPD 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY+I    LC   ++D+A +L  +M   G  PN V + TL+    + ++T K  ELL 
Sbjct: 115 VVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLE 174

Query: 222 SMDKRNVMPYASILSIIVDLLVK 244
           ++     +P     +IIVD L K
Sbjct: 175 TLVSSGFVPDVVTYTIIVDGLCK 197



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 128/274 (46%), Gaps = 37/274 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+ + DGLCK G +D+A EL  +M      PN+VTYN+LI G C A+   +A  L
Sbjct: 113 PDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYEL 172

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
              ++  G   DVVT+ +I+D LCK  ++D+A ++++ M++ G  P              
Sbjct: 173 LETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCR 232

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             C  + +AY  L++G CK  + K A+++   +      P +  
Sbjct: 233 TGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDV 289

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  +   C + ++D+  ++F DM  +G  PN   +  +M    +  +  +    L SM 
Sbjct: 290 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMH 349

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258
               +P     +II+D L K      S P+  RQ
Sbjct: 350 SAGCVPDVVSYNIIIDGLFK-----ASKPKEARQ 378



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 120/233 (51%), Gaps = 9/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  I+DGLCKEG +DKA ++   M      P+V+TY +L+ G C     +EA ++
Sbjct: 183 PDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHI 242

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +   +D + +  +++  CK+ +  EA +++D     G+R   + ++    Y  L
Sbjct: 243 FKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD-----GIRGTPYIDV----YNAL 293

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK G+L     + + +   G +PN+ TYNI +  LC   ++D+A      M   G 
Sbjct: 294 MDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 353

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+ V +  ++    + ++  +  ++L  M +  + P A   + ++    K E
Sbjct: 354 VPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEE 406



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TYN ++DGLCK G VD+A      M      P+VV+YN +I G   A+   EA 
Sbjct: 318 CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEAR 377

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M+  G+  D VT+N +M + CK  + D+A  +L  MI+ GV PD       V Y 
Sbjct: 378 QVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDN------VTYN 431

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            LI GL +  +L +A EL   + R G ++    TYN  I  LC +  + +A  L   M  
Sbjct: 432 TLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTG 491

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK-RNVMPYASIL 235
            GV  N V +   +    ++    +   LL  MD  R+ + Y +++
Sbjct: 492 HGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVI 537



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 7/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+   P    YN ++DG CKEG +D+   +F  M      PN+ TYN ++ G C     +
Sbjct: 280 GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVD 339

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA      M   G   DVV++N+I+D L K  K  EA ++LD MIQ G+ PDA      V
Sbjct: 340 EAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDA------V 393

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+   CK  +  +A  + +++ +AG+ P+ VTYN  I  L    ++  A++L  +M
Sbjct: 394 TYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEM 453

Query: 189 EVKG-VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              G V   C  + T++    ++    + + L+  M    V       +I +D L K
Sbjct: 454 LRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCK 510



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 8/207 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
            TYNTIID LCKEG + +A  L   M    +  N VTYN  I   C     +EA  L  E
Sbjct: 464 TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE 523

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M       D V++  ++  LCK  ++D A++L   M    V     C I    +  LID 
Sbjct: 524 M---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREM----VAVKGLC-ITSHTFNLLIDA 575

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
             K  +L  A  L + + + G  P+V+TYN+ I  LC  +++DKA +LF +M V+G+  +
Sbjct: 576 FTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVAS 635

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSM 223
            V +T L+     +    + +++L  M
Sbjct: 636 SVSYTVLIYGLCGQGRGKEALQVLEEM 662



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 115/260 (44%), Gaps = 40/260 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT++   CKE   D A  +   M    ++P+ VTYN+LI G    N   +A  L
Sbjct: 390 PDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYEL 449

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             EM+  G + S   T+N I+D LCK   + +A  L+D M   GV      E N V Y  
Sbjct: 450 MHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGV------EANTVTYNI 503

Query: 133 LIDGLCKIGKLKNAREL----------------------SQSLTRA-----------GLM 159
            ID LCK G+L  A  L                      ++ L RA           GL 
Sbjct: 504 FIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLC 563

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
               T+N+ I A    +++D+A  L   M  +G +P+ + +  ++    + ++  K  EL
Sbjct: 564 ITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWEL 623

Query: 220 LRSMDKRNVMPYASILSIIV 239
              M  R ++  +   ++++
Sbjct: 624 FDEMAVRGIVASSVSYTVLI 643



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 49/101 (48%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TYN +I  LCK   VDKA ELF +M    I  + V+Y  LI+G C    G EA 
Sbjct: 597 CSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEAL 656

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
            +  EM     + D +    +   L    + +EA  LL  M
Sbjct: 657 QVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+V TYNI I  LC   + DKA ++  +M  +GV P+ V F ++M    +  +  +   L
Sbjct: 8   PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKNE 246
           L  M +RN  P     + ++  L K +
Sbjct: 68  LAVMAERNCRPSCCTYNTLISGLCKQQ 94


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   YN ++ GLC+E  V++A+ LF +M  + INPNVVTYN+LI+G C A     A  
Sbjct: 146 KPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYE 205

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  +G     V++N ++D  CK + +  A  + D M++    P      N+V Y  
Sbjct: 206 LFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVP------NVVTYTT 259

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGL K GK++ A E+   + + G+ PNV TY+  I   C   ++D+AH L   M  +G
Sbjct: 260 LIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG 319

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +AP  V +  L+ S  R ++     +L R M +R   P
Sbjct: 320 IAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHP 357



 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 43/251 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYNT+I+GLCK   ++ A ELF +M  +   P  V+YN+LI GFC   D   A+ +
Sbjct: 182 PNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDV 241

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+      +VVT+  ++D L K+ K+  A  +LD M++ GV P      N+  Y CL
Sbjct: 242 FDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTP------NVATYSCL 295

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI-------------------------- 167
           IDG CK+ ++  A +L + +   G+ P VVTYNI                          
Sbjct: 296 IDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRC 355

Query: 168 ---------TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
                     + ALC+ +Q+D AH L+ +M  KG  P+ + + TL     R  +  +  E
Sbjct: 356 HPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQE 415

Query: 219 LLRSMD--KRN 227
           L+  M   KRN
Sbjct: 416 LMEKMKLTKRN 426



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 7/232 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K   + Y+TII+ LCK   V++A+EL  +M      P+ +TY  ++   C     ++A  
Sbjct: 77  KRKAIAYSTIINWLCKLNRVEEARELIEKMA-RYAPPDALTYGPIVERLCKTKRIDDALA 135

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM  RG++ D   +N ++  LC+  K++EA  L + M++  + P      N+V Y  
Sbjct: 136 TVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINP------NVVTYNT 189

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK  +++ A EL + +   G +P  V+YN  I   C  + +  A D+F  M    
Sbjct: 190 LINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSN 249

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             PN V +TTL+    +  +     E+L  M K+ V P  +  S ++D   K
Sbjct: 250 CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCK 301



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y  +I  LCK G  D+A +L   M+ +      + Y+++I+  C  N   EA  L IE M
Sbjct: 48  YGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEAREL-IEKM 106

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
            R    D +T+  I++ LCK +++D+A   ++ M   G++PDAF       Y  ++ GLC
Sbjct: 107 ARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFI------YNFVLSGLC 160

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           +  K++ AR L + + +  + PNVVTYN  I+ LC   +++ A++LF +M  KG  P  V
Sbjct: 161 QEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEV 220

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + TL+  F +K +     ++   M + N +P     + ++D L K+
Sbjct: 221 SYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKS 267



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 6/184 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T+IDGL K G V  A E+   M  + + PNV TY+ LI GFC     +EA 
Sbjct: 250 CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAH 309

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G+   VVT+N++++ LC+  K+++A +L   M Q        C   +V Y 
Sbjct: 310 KLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQ------RRCHPTVVTYN 363

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+  LC   +L  A  L   +   G  P+ +TY+     L    ++ +A +L   M++ 
Sbjct: 364 TLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLT 423

Query: 192 GVAP 195
              P
Sbjct: 424 KRNP 427



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 7/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   T+NT+ DG  K G +++ KE++  M +         Y  LI   C   + +EA  L
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  +  +   + ++ I++ LCK  +++EA  L++ M +    PDA      + YG +
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAP-PDA------LTYGPI 120

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++ LCK  ++ +A    + +   G+ P+   YN  +  LC +E++++A  LF  M  + +
Sbjct: 121 VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN V + TL+    +        EL + M  +  +P     + ++D   K +
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKK 233


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 127/239 (53%), Gaps = 10/239 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G  C+PN VTYN++IDGLCK    D+A+ELF  MK    +P++VTYN+L+ G     
Sbjct: 2   RDHG--CEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTG 59

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A  LF EM+DR    DV++FN+++  LC+  K++ A      M       D  C  
Sbjct: 60  KLERAMALFQEMLDR-RSHDVISFNILVTGLCRAGKIETALEFFRKM-------DDRCSP 111

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N++ Y  LIDGLCK  ++  A EL +S+   G  P+V+TY I +  LC + ++  A ++ 
Sbjct: 112 NVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVL 171

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +M   G  PN V + +L+    R    S  + L+R M  R   P       ++D L K
Sbjct: 172 REMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 230



 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 130/235 (55%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T+IDGLCK G V  A  +   M D+   P+++ YN LI+G C A+  +E+ 
Sbjct: 214 CTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESI 273

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L    +  G++ DVVT++ ++  LC++ ++DEA RLL  +   G  PD      ++ Y 
Sbjct: 274 ALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPD------VILYS 327

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK GK+  A +L + +T  G   +VVTY+  I  LC   ++D+AH L   M   
Sbjct: 328 TLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRM 387

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  P+ + + +L+      N   + IEL+  M++ N  P A   +I++  + + E
Sbjct: 388 GTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRME 442



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TY+ +IDGLCK   V +A EL   MK    +P+V+TY  L+ G C  +    A 
Sbjct: 109 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 168

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM+D G   ++VT+N ++  LC+ R++ +A  L+  M   G  P      N+V YG
Sbjct: 169 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTP------NVVTYG 222

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK+G++K+A  +   +   G  P+++ YN+ I+ LC  +Q+D++  L       
Sbjct: 223 TLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSG 282

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P+ V +++++    R N   +   LL  +  R   P   + S ++D L K
Sbjct: 283 GIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 335



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY  ++DGLCKE  V  A E+  +M D    PN+VTYNSL+HG C A   ++A 
Sbjct: 144 CSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDAL 203

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M  RG   +VVT+  ++D LCK  ++ +A  +L  MI  G  PD      ++ Y 
Sbjct: 204 ALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD------LMIYN 257

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK  ++  +  L +     G+ P+VVTY+  I+ LC   ++D+A  L L ++ +
Sbjct: 258 MLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSR 317

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ ++++TL+    +  +  +  +L   M            S ++D L K
Sbjct: 318 GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCK 370



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 118/209 (56%), Gaps = 7/209 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY+++I GLC+   +D+A  L L +K     P+V+ Y++LI G C A   +EA  
Sbjct: 285 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 344

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+  M   G  +DVVT++ ++D LCK  ++DEA  LL  M++ G  P      + + Y  
Sbjct: 345 LYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPP------STMTYNS 398

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH-DLFLDMEVK 191
           LI GLC +  L  A EL + + R+   P+ VTYNI IH +C  E++D A  D F +M   
Sbjct: 399 LIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDN 458

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           GV P+ + ++ L+    +  +  ++  L+
Sbjct: 459 GVIPDHITYSILLEGLKKSKDLHELRHLV 487



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ + Y+T+IDGLCK G VD+A +L+  M  +  + +VVTY++LI G C A   +EA 
Sbjct: 319 CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAH 378

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+  G     +T+N ++  LC    +DEA  L++ M +    P A      V Y 
Sbjct: 379 LLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSA------VTYN 432

Query: 132 CLIDGLCKIGKLKNAR-ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            LI G+C++ ++ +A  +  Q +   G++P+ +TY+I +  L   + + +   L LD  V
Sbjct: 433 ILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMV 492

Query: 191 K 191
           +
Sbjct: 493 Q 493


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 130/228 (57%), Gaps = 6/228 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +Y T+I+G CK   VD+A  LF  M+ + I P+ VTYNSLI G C +   + A  L
Sbjct: 346 PNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWEL 405

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM D G  +++ T+N ++D LCKN  +D+A  L+  +   G++PD +       +  L
Sbjct: 406 VDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMY------TFNIL 459

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK+G+LKNA+++ Q L   G   N  TYNI ++ LC +   D+A  L   M+  G+
Sbjct: 460 IYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGI 519

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
            P+ V + TL+ +   K+E  K  +LLR M  R+V+     L +++ L
Sbjct: 520 IPDAVTYETLIQALFHKDENEKAEKLLREMIARDVVYALEGLEMVLHL 567



 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 130/238 (54%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + K N V YNTIID LCK   V  A EL+ QM  + I+P+VVT+++LI+GFC      
Sbjct: 201 GKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLE 260

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  LF EM+ + +  D  TFN+++D LCK   +  A  +L +M++ GV P      N+V
Sbjct: 261 EAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMP------NVV 314

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ +  ++++ G  PN  +Y   I+  C  + +D+A  LF DM
Sbjct: 315 TYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDM 374

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + KG+AP+ V + +L+    +    S   EL+  M            + ++D L KN 
Sbjct: 375 QFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNH 432



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N ++D LCKEG +  AK + + M  E + PNVVTY+SL+ G+C  N  N+A+++
Sbjct: 276 PDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHV 335

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +   G   +  ++  +++  CK + +DEA  L + M   G+ PD       V Y  L
Sbjct: 336 LNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDK------VTYNSL 389

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G++  A EL   +   G   N+ TYN  I ALC +  +D+A  L   ++ +G+
Sbjct: 390 IDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGI 449

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   F  L+    +        ++ + +  +     A   +I+V+ L K
Sbjct: 450 QPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCK 500



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 132/263 (50%), Gaps = 13/263 (4%)

Query: 1   MANGNREFGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT 53
           MA  N  F ++ K       P+T+T+NT+I GLC  G V +A      +     + +  +
Sbjct: 116 MAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFS 175

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           Y +LI+G C   +   A  +  ++  + ++ +VV +N I+D LCK++ + +A  L   MI
Sbjct: 176 YGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMI 235

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
              + PD      +V +  LI G C +G+L+ A  L + +    + P+  T+NI + ALC
Sbjct: 236 AKKISPD------VVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALC 289

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            +  +  A ++ + M  +GV PN V +++LM  +   N+ +K   +L ++ +    P A 
Sbjct: 290 KEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAH 349

Query: 234 ILSIIVDLLVKNEISLNSIPQFN 256
               +++   K ++   ++  FN
Sbjct: 350 SYCTMINGFCKIKMVDEALSLFN 372



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 13  KPNT--VTYNTIIDGLCKEG--FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           KP +  + +N I+  L K        A  L  +++   I P++ T+N LI+ +C+  + N
Sbjct: 61  KPTSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMN 120

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  +  +++  G + D +TFN ++  LC N K+ EA    D ++  G   D F      
Sbjct: 121 FAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQF------ 174

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +YG LI+GLCKIG+ + A ++ + +    +  NVV YN  I +LC  + +  A++L+  M
Sbjct: 175 SYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQM 234

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             K ++P+ V F+ L+  F    +  +   L R M  +N+ P     +I+VD L K
Sbjct: 235 IAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCK 290



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 57/101 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+N +I GLCK G +  A+++F  +  +  + N  TYN +++G C     +EAE 
Sbjct: 450 QPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEA 509

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           L  +M D G+  D VT+  ++  L    + ++A +LL  MI
Sbjct: 510 LLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMI 550



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 14/179 (7%)

Query: 84  SDVVTFNVIMDELCK--NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
           S ++ FN I+  L K  N     A  L   +   G+ PD F       +  LI+  C + 
Sbjct: 64  SSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIF------TFNILINCYCHMA 117

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA---HDLFLDMEVKGVAPNCV 198
           ++  A  +   + + G  P+ +T+N  I  LC + ++ +A   HD  L +   G   +  
Sbjct: 118 EMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLAL---GFHLDQF 174

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            + TL+    +  ET   +++LR +D + V     + + I+D L K+++ +++   +++
Sbjct: 175 SYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQ 233


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/234 (39%), Positives = 130/234 (55%), Gaps = 11/234 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +YN +I+GLCK   VD+A  L  +M  +N+ P+ VTYNSLI G C +     A  L
Sbjct: 288 PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNL 347

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG  +DVVT+  ++D LCKN+ +D+AT L   M + G++P  +       Y  L
Sbjct: 348 MNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMY------TYTAL 401

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+LKNA+EL Q L   G   +V TY + I  LC +   D+A  +   ME  G 
Sbjct: 402 IDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGC 461

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI-IVDLLVKNE 246
            PN V F  ++ S   K+E  K  +LL  M  + ++    +L   + D+ V+NE
Sbjct: 462 IPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLL----VLDFKVADVFVQNE 511



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 138/238 (57%), Gaps = 14/238 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YNTIIDGLCK+  V++A +L+ +M    I P+ +TY +LI+GFC       A  
Sbjct: 147 RPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFS 206

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+ + +   V  +N++++ LCK   + EA  LL +M + G++P       +V Y  
Sbjct: 207 LLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKP------GVVTYST 260

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C +G+++NA+++  ++ + G+ PNV +YNI I+ LC  +++D+A +L  +M  K 
Sbjct: 261 LMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKN 320

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVKNE 246
           + P+ V + +L+    +    +  + L+  M  R    +V+ Y S+L    D L KN+
Sbjct: 321 MVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLL----DALCKNQ 374



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N I+  L K      A  L  QM+ + I  N VT N LI+ FC+      +  +
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  G Q D +T N +M  LC   ++ ++    D ++  G + D       V+YG L
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDH------VSYGTL 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCKIG+ + A +L + +      PNVV YN  I  LC D+ +++A+DL+ +M+ +G+
Sbjct: 122 LNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ + +TTL+  F    +      LL  M  +N+ P   I +I+++ L K
Sbjct: 182 FPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCK 232



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 2/112 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  +P   TY  +IDGLCK G +  A+ELF  +  +    +V TY  +I G C   
Sbjct: 387 KERGI--QPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEG 444

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
             +EA  +  +M D G   + VTF +I+  L +  + D+A +LL  MI  G+
Sbjct: 445 MFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 496



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           ++ FN I+  L K ++   A  L   M   G+R + F  +NI     LI+  C +G++  
Sbjct: 10  IIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRAN-FVTLNI-----LINCFCHLGQMAF 63

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           +  +   + + G  P+ +T N  +  LC   ++ K+      +  +G   + V + TL+ 
Sbjct: 64  SFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLN 123

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              +  ET   ++LLR ++ R+  P   + + I+D L K+++
Sbjct: 124 GLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKL 165



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +  TY  +I GLCKEG  D+A  +  +M+D    PN VT+  +I      ++ ++AE
Sbjct: 426 CCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAE 485

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
            L  EM+ +GL   V+ F V  D   +N   D+A +LL  MI  G+
Sbjct: 486 KLLHEMIAKGLL--VLDFKV-ADVFVQNEN-DKAEKLLHEMIAKGL 527


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 121/221 (54%), Gaps = 8/221 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ G+   PN V Y  +ID LCK G VD A+  F QM +E + PN+V +NSL++G C
Sbjct: 333 NKMRQHGL--SPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLC 390

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
             +    AE L  EM+D+G+  + V FN ++  LC   ++ E  RL+DLM   GVRPDAF
Sbjct: 391 TVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAF 450

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                 +Y  LI G C  G+   A ++   +   GL P  VTYN  +H  C+  ++D A+
Sbjct: 451 ------SYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAY 504

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            LF +M  KGV P  V + T++    +    S+  EL  +M
Sbjct: 505 CLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNM 545



 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 135/269 (50%), Gaps = 39/269 (14%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           MAN   + G  C PN VTY T+IDGLCK    D+A+ +F QM D  + PN  TYN LIHG
Sbjct: 195 MAN---DHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHG 251

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +       E   +  +M  RGL+ D  T+  +++ LC    + E    LDLM++ G+ PD
Sbjct: 252 YLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLC---ALSEMHSFLDLMVENGLSPD 308

Query: 121 -----------AFCEI------------------NIVAYGCLIDGLCKIGKLKNARELSQ 151
                      A C +                  N+V YG LID LCK+G++ +A     
Sbjct: 309 HHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFN 368

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI--- 208
            +   G+ PN+V +N  ++ LC  ++ ++A +L  +M  +G+ PN V F TL+ +     
Sbjct: 369 QMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVG 428

Query: 209 RKNETSKVIELLRSMDKR-NVMPYASILS 236
           R  E  ++I+L+  +  R +   Y  ++S
Sbjct: 429 RVMEGRRLIDLMEHVGVRPDAFSYTPLIS 457



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 134/244 (54%), Gaps = 8/244 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P  VTYNT++ G C    +D A  LF +M  + + P VVTYN+++HG       +EA+ 
Sbjct: 481 SPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKE 540

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M++ G + D+ T+N+I++ LCK+  +DEA ++   +   G+      ++NI+ +  
Sbjct: 541 LYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGL------QLNIITFTI 594

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K G+ ++A +L  ++   GL+PNVVTY +    L  +  +++   LF  ME  G
Sbjct: 595 MIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNG 654

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN-- 250
            APN  +   L+   + + + S+    L  +D+RN    AS  S+++ +   +E   +  
Sbjct: 655 TAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLISIFTSDEYQHHAK 714

Query: 251 SIPQ 254
           S+P+
Sbjct: 715 SLPE 718



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  +Y  +I G C  G  D+A+++F  M    ++P  VTYN+L+HG+C A+  ++A  
Sbjct: 446 RPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYC 505

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +G+   VVT+N I+  L + ++  EA  L   MI  G + D      I  Y  
Sbjct: 506 LFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCD------IYTYNI 559

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK   +  A ++ QSL   GL  N++T+ I I AL    + + A DLF  +   G
Sbjct: 560 ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANG 619

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
           + PN V +  +  + I +    +   L  +M+K    P + +L+ +V  LL + +IS
Sbjct: 620 LVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS 676



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+   +N       K G +DKA ++F +M+   ++PNVV Y +LI   C     ++AE 
Sbjct: 306 SPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEV 365

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M++ G+  ++V FN ++  LC   K + A  L+  M+  G+ P+A      V +  
Sbjct: 366 KFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNA------VFFNT 419

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC +G++   R L   +   G+ P+  +Y   I   C   + D+A  +F  M   G
Sbjct: 420 LICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIG 479

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++P  V + TL+  +   +       L R M ++ V P
Sbjct: 480 LSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTP 517



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 117/246 (47%), Gaps = 19/246 (7%)

Query: 8   FGVVCKP----NTVTYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFC 62
           FG++ K     N +  N ++ GLC    V +A ++ LQ M +    P+ V+Y+ L+ GFC
Sbjct: 121 FGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFC 180

Query: 63  YANDGNEAEYLFIEMMD---RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
             N   EA  L   M +   R    +VVT+  ++D LCK +  D A  +   MI  GV+P
Sbjct: 181 NENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKP 240

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                 N   Y CLI G   IGK K   ++ + ++  GL P+  TY   ++ LC   +M 
Sbjct: 241 ------NNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMH 294

Query: 180 KAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
                FLD+ V+ G++P+  IF     ++ +     K +++   M +  + P       +
Sbjct: 295 S----FLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGAL 350

Query: 239 VDLLVK 244
           +D L K
Sbjct: 351 IDALCK 356



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 21/218 (9%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           + PN  TY+ LI   C       +   F  ++  G + + +  N ++  LC  +++ EA 
Sbjct: 94  VAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEA- 152

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR---AGLMPNVV 163
             +D+++Q    P+  C  + V+Y  L+ G C   + + A EL + +         PNVV
Sbjct: 153 --MDVLLQR--MPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVV 208

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   I  LC  +  D+A  +F  M   GV PN   +  L+  ++   +  +V+++L  M
Sbjct: 209 TYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKM 268

Query: 224 DKRNVMP----YASILSII---------VDLLVKNEIS 248
             R + P    Y S+L+ +         +DL+V+N +S
Sbjct: 269 SARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLS 306


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   YN ++ GLC+E  V++A+ LF +M  + INPNVVTYN+LI+G C A     A  
Sbjct: 41  KPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYE 100

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  +G     V++N ++D  CK + +  A  + D M++    P      N+V Y  
Sbjct: 101 LFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVP------NVVTYTT 154

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGL K GK++ A E+   + + G+ PNV TY+  I   C   ++D+AH L   M  +G
Sbjct: 155 LIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG 214

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +AP  V +  L+ S  R ++     +L R M +R   P
Sbjct: 215 IAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHP 252



 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 43/251 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYNT+I+GLCK   ++ A ELF +M  +   P  V+YN+LI GFC   D   A+ +
Sbjct: 77  PNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDV 136

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+      +VVT+  ++D L K+ K+  A  +LD M++ GV P      N+  Y CL
Sbjct: 137 FDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTP------NVATYSCL 190

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI-------------------------- 167
           IDG CK+ ++  A +L + +   G+ P VVTYNI                          
Sbjct: 191 IDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRC 250

Query: 168 ---------TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
                     + ALC+ +Q+D AH L+ +M  KG  P+ + + TL     R  +  +  E
Sbjct: 251 HPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQE 310

Query: 219 LLRSMD--KRN 227
           L+  M   KRN
Sbjct: 311 LMEKMKLTKRN 321



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 6/184 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T+IDGL K G V  A E+   M  + + PNV TY+ LI GFC     +EA 
Sbjct: 145 CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAH 204

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G+   VVT+N++++ LC+  K+++A +L   M Q        C   +V Y 
Sbjct: 205 KLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQ------RRCHPTVVTYN 258

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+  LC   +L  A  L   +   G  P+ +TY+     L    ++ +A +L   M++ 
Sbjct: 259 TLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLT 318

Query: 192 GVAP 195
              P
Sbjct: 319 KRNP 322



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 6/196 (3%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P+ +TY  ++   C     ++A     EM  RG++ D   +N ++  LC+  K++EA  L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
            + M++  + P      N+V Y  LI+GLCK  +++ A EL + +   G +P  V+YN  
Sbjct: 67  FEKMVKQRINP------NVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTL 120

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I   C  + +  A D+F  M      PN V +TTL+    +  +     E+L  M K+ V
Sbjct: 121 IDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 180

Query: 229 MPYASILSIIVDLLVK 244
            P  +  S ++D   K
Sbjct: 181 TPNVATYSCLIDGFCK 196



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           M R    D +T+  I++ LCK +++D+A   ++ M   G++PDAF       Y  ++ GL
Sbjct: 1   MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFI------YNFVLSGL 54

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C+  K++ AR L + + +  + PNVVTYN  I+ LC   +++ A++LF +M  KG  P  
Sbjct: 55  CQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTE 114

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V + TL+  F +K +     ++   M + N +P     + ++D L K+
Sbjct: 115 VSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKS 162



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 6/128 (4%)

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           PDA      + YG +++ LCK  ++ +A    + +   G+ P+   YN  +  LC +E++
Sbjct: 7   PDA------LTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 60

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           ++A  LF  M  + + PN V + TL+    +        EL + M  +  +P     + +
Sbjct: 61  EEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTL 120

Query: 239 VDLLVKNE 246
           +D   K +
Sbjct: 121 IDGFCKKK 128


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 121/221 (54%), Gaps = 8/221 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ G+   PN V Y  +ID LCK G VD A+  F QM +E + PN+V +NSL++G C
Sbjct: 398 NKMRQHGL--SPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLC 455

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
             +    AE L  EM+D+G+  + V FN ++  LC   ++ E  RL+DLM   GVRPDAF
Sbjct: 456 TVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAF 515

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                 +Y  LI G C  G+   A ++   +   GL P  VTYN  +H  C+  ++D A+
Sbjct: 516 ------SYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAY 569

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            LF +M  KGV P  V + T++    +    S+  EL  +M
Sbjct: 570 CLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNM 610



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 134/244 (54%), Gaps = 8/244 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P  VTYNT++ G C    +D A  LF +M  + + P VVTYN+++HG       +EA+ 
Sbjct: 546 SPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKE 605

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M++ G + D+ T+N+I++ LCK+  +DEA ++   +   G+      ++NI+ +  
Sbjct: 606 LYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGL------QLNIITFTI 659

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K G+ ++A +L  ++   GL+PNVVTY +    L  +  +++   LF  ME  G
Sbjct: 660 MIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNG 719

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN-- 250
            APN  +   L+   + + + S+    L  +D+RN    AS  S+++ +   +E   +  
Sbjct: 720 TAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAK 779

Query: 251 SIPQ 254
           S+P+
Sbjct: 780 SLPE 783



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 124/239 (51%), Gaps = 8/239 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           + G  C PN V+Y+ +I+G   EG VDK   LFL+M D  I P+VVTY ++I G C A  
Sbjct: 190 DHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQL 249

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + AE +F +M+D G + +  T+N ++       K  E  ++L+ M   G++PD +    
Sbjct: 250 FDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCY---- 305

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              YG L++ LCK G+ + AR    S+ R G+ P V TY I IH       + + H  FL
Sbjct: 306 --TYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHS-FL 362

Query: 187 DMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           D+ V+ G++P+  IF     ++ +     K +++   M +  + P       ++D L K
Sbjct: 363 DLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCK 421



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 7/240 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  +P+  +Y  +I G C  G  D+A+++F  M    ++P  VTYN+L+HG+C A+  ++
Sbjct: 508 VGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDD 567

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  LF EM+ +G+   VVT+N I+  L + ++  EA  L   MI  G + D      I  
Sbjct: 568 AYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCD------IYT 621

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +++GLCK   +  A ++ QSL   GL  N++T+ I I AL    + + A DLF  + 
Sbjct: 622 YNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIP 681

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
             G+ PN V +  +  + I +    +   L  +M+K    P + +L+ +V  LL + +IS
Sbjct: 682 ANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS 741



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 131/291 (45%), Gaps = 68/291 (23%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY T+IDGLCK    D+A+ +F QM D    PN  TYN LIHG+       E   +
Sbjct: 232 PDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQM 291

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT--------------------------- 106
             EM  RGL+ D  T+  +++ LCKN +  EA                            
Sbjct: 292 LEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYAT 351

Query: 107 --------RLLDLMIQGGVRPD-----------AFCEI------------------NIVA 129
                     LDLM++ G+ PD           A C +                  N+V 
Sbjct: 352 KGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVN 411

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           YG LID LCK+G++ +A      +   G+ PN+V +N  ++ LC  ++ ++A +L  +M 
Sbjct: 412 YGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEML 471

Query: 190 VKGVAPNCVIFTTLMPSFI---RKNETSKVIELLRSMDKR-NVMPYASILS 236
            +G+ PN V F TL+ +     R  E  ++I+L+  +  R +   Y  ++S
Sbjct: 472 DQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLIS 522



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 126/251 (50%), Gaps = 9/251 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN---INPNVVTYNSLIHGFCYANDGN 68
           C P+TV+Y  ++ GLC E   ++A EL   M D++     PNVV+Y+ +I+GF      +
Sbjct: 157 CMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVD 216

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +   LF+EM+DRG+  DVVT+  ++D LCK +  D A  +   MI  G +P+ +      
Sbjct: 217 KPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNY------ 270

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y CLI G   IGK K   ++ + ++  GL P+  TY   ++ LC + +  +A   F  M
Sbjct: 271 TYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSM 330

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             KG+ P    +  L+  +  K   S++   L  M +  + P   I +I      K  + 
Sbjct: 331 IRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMI 390

Query: 249 LNSIPQFNRQK 259
             ++  FN+ +
Sbjct: 391 DKAMDIFNKMR 401



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+   +N       K G +DKA ++F +M+   ++PNVV Y +LI   C     ++AE 
Sbjct: 371 SPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEV 430

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M++ G+  ++V FN ++  LC   K + A  L+  M+  G+ P+A      V +  
Sbjct: 431 KFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNA------VFFNT 484

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC +G++   R L   +   G+ P+  +Y   I   C   + D+A  +F  M   G
Sbjct: 485 LICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIG 544

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++P  V + TL+  +   +       L R M ++ V P
Sbjct: 545 LSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTP 582



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 4/241 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE      PN  TY+ +I   C+ G ++     F  +       + +  N L+ G C+  
Sbjct: 80  RECSDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGK 139

Query: 66  DGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              EA + L   M + G   D V++ +++  LC  ++ +EA  LL +M     R    C 
Sbjct: 140 RVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRR---CP 196

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V+Y  +I+G    G++     L   +   G+ P+VVTY   I  LC  +  D+A  +
Sbjct: 197 PNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGV 256

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M   G  PN   +  L+  ++   +  +V+++L  M  R + P       +++ L K
Sbjct: 257 FQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCK 316

Query: 245 N 245
           N
Sbjct: 317 N 317



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 44/249 (17%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---------- 62
           KP+  TY ++++ LCK G   +A+  F  M  + I P V TY  LIHG+           
Sbjct: 301 KPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHS 360

Query: 63  -----------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                  YA  G  ++A  +F +M   GL  +VV +  ++D LC
Sbjct: 361 FLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALC 420

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  ++D+A    + MI  GV P      NIV +  L+ GLC + K + A EL   +   G
Sbjct: 421 KLGRVDDAEVKFNQMINEGVTP------NIVVFNSLVYGLCTVDKWERAEELVYEMLDQG 474

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI---RKNETS 214
           + PN V +N  I  LCN  ++ +   L   ME  GV P+   +T L+  +    R +E  
Sbjct: 475 ICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAE 534

Query: 215 KVIELLRSM 223
           KV + + S+
Sbjct: 535 KVFDGMVSI 543


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 128/231 (55%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNTIIDG CK G + KA  L  +M  + I+PN +T+N LI GFC   +   A+ +
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKV 321

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  +GLQ +VVT+N +++ LC N K+DEA  L D M   G++P      N+V Y  L
Sbjct: 322 FEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKP------NVVTYNAL 375

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK   LK ARE+   + + GL PNV+T+N  I A     +MD A  L   M   GV
Sbjct: 376 INGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGV 435

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN   +  L+  F R+    +  +L + M+   +       +I+VD L K
Sbjct: 436 CPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCK 486



 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 9/231 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN++I+GLC  G +D+A  L  +M    + PNVVTYN+LI+GFC      EA  
Sbjct: 331 QPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEARE 390

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  ++  RGL  +V+TFN ++D   K  +MD+A  L  +M+  GV P      N+  Y C
Sbjct: 391 MLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP------NVSTYNC 444

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD---ME 189
           LI G C+ G +K AR+L++ +   GL  ++VTYNI + ALC   +  KA  L  +   ME
Sbjct: 445 LIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLME 504

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            KG   N V +  L+  F  K +  +   LL  M ++ ++P  +   I+ D
Sbjct: 505 KKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 555



 Score =  143 bits (360), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 125/218 (57%), Gaps = 11/218 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  GV    N VT++ +I+GLCK G   KA ++   MK    +P+V+TYN++I G+C A 
Sbjct: 223 RRIGV----NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAG 278

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A+ L  EM+ + +  + +TFN+++D  C++  +  A ++ + M + G++P      
Sbjct: 279 KMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQP------ 332

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+V Y  LI+GLC  GKL  A  L   ++  GL PNVVTYN  I+  C  + + +A ++ 
Sbjct: 333 NVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREML 392

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            D+  +G+APN + F TL+ ++ +         LLRSM
Sbjct: 393 DDIGKRGLAPNVITFNTLIDAYGKAGRMDDAF-LLRSM 429



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 110/205 (53%), Gaps = 9/205 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  KPN VTYN +I+G CK+  + +A+E+   +    + PNV+T+N+LI  +  A   +
Sbjct: 362 GMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMD 421

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  L   M+D G+  +V T+N ++   C+   + EA +L   M   G++ D      +V
Sbjct: 422 DAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD------LV 475

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLT---RAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            Y  L+D LCK G+ + A  L   +T   + G   N+VTYN+ I   CN  ++++A+ L 
Sbjct: 476 TYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLL 535

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRK 210
            +M  KG+ PN   +  L    + K
Sbjct: 536 NEMLEKGLIPNRTTYDILRDEMMEK 560



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 10/226 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N++  + ++    K G +D A E F +  D     + ++ N ++            E ++
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVY 217

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ R +  +VVTF+V+++ LCK  K  +A  +++ M   G  P      +++ Y  +I
Sbjct: 218 KEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSP------SVITYNTII 271

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK GK+  A  L + +    + PN +T+NI I   C DE +  A  +F +M+ +G+ 
Sbjct: 272 DGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQ 331

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASILS 236
           PN V + +L+       +  + + L   M     K NV+ Y ++++
Sbjct: 332 PNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F    D G +   ++ N ++  L K  ++     +   MI+  +       +N+V +  +
Sbjct: 182 FDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRI------GVNVVTFDVV 235

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+GK + A ++ + +   G  P+V+TYN  I   C   +M KA  L  +M  K +
Sbjct: 236 INGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRI 295

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN + F  L+  F R    +   ++   M ++ + P     + +++ L  N
Sbjct: 296 HPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSN 347



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGK 142
           ++ +  ++++    KN +MD A    D     G R  A  C   +V+       L K G+
Sbjct: 157 ANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVS-------LVKEGR 209

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           +     + + + R  +  NVVT+++ I+ LC   +  KA D+  DM+  G +P+ + + T
Sbjct: 210 IGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNT 269

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++  + +  +  K   LL+ M  + + P     +I++D   ++E
Sbjct: 270 IIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDE 313


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 128/231 (55%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNTIIDG CK G + KA  L  +M  + I+PN +T+N LI GFC   +   A+ +
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKV 321

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  +GLQ +VVT+N +++ LC N K+DEA  L D M   G++P      N+V Y  L
Sbjct: 322 FEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKP------NVVTYNAL 375

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK   LK ARE+   + + GL PNV+T+N  I A     +MD A  L   M   GV
Sbjct: 376 INGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGV 435

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN   +  L+  F R+    +  +L + M+   +       +I+VD L K
Sbjct: 436 CPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCK 486



 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 124/214 (57%), Gaps = 6/214 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN++I+GLC  G +D+A  L  +M    + PNVVTYN+LI+GFC      EA  
Sbjct: 331 QPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEARE 390

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  ++  RGL  +V+TFN ++D   K  +MD+A  L  +M+  GV P      N+  Y C
Sbjct: 391 MLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP------NVSTYNC 444

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C+ G +K AR+L++ +   GL  ++VTYNI + ALC   +  KA  L  +M   G
Sbjct: 445 LIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVG 504

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           + P+ + +  L+  + R+  ++  + +   M+K+
Sbjct: 505 LNPSHLTYNALIDGYFREGNSTAALNVRTLMEKK 538



 Score =  143 bits (360), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 125/218 (57%), Gaps = 11/218 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  GV    N VT++ +I+GLCK G   KA ++   MK    +P+V+TYN++I G+C A 
Sbjct: 223 RRIGV----NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAG 278

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A+ L  EM+ + +  + +TFN+++D  C++  +  A ++ + M + G++P      
Sbjct: 279 KMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQP------ 332

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+V Y  LI+GLC  GKL  A  L   ++  GL PNVVTYN  I+  C  + + +A ++ 
Sbjct: 333 NVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREML 392

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            D+  +G+APN + F TL+ ++ +         LLRSM
Sbjct: 393 DDIGKRGLAPNVITFNTLIDAYGKAGRMDDAF-LLRSM 429



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 106/197 (53%), Gaps = 6/197 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +T+NT+ID   K G +D A  L   M D  + PNV TYN LI GFC   +  EA  L
Sbjct: 402 PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKL 461

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GL++D+VT+N+++D LCK  +  +A RLLD M + G+ P        + Y  L
Sbjct: 462 AKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSH------LTYNAL 515

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  + G    A  +   + + G   N+VTYN+ I   CN  ++++A+ L  +M  KG+
Sbjct: 516 IDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGL 575

Query: 194 APNCVIFTTLMPSFIRK 210
            PN   +  L    + K
Sbjct: 576 IPNRTTYDILRDEMMEK 592



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 10/226 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N++  + ++    K G +D A E F +  D     + ++ N ++            E ++
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVY 217

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ R +  +VVTF+V+++ LCK  K  +A  +++ M   G  P      +++ Y  +I
Sbjct: 218 KEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSP------SVITYNTII 271

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK GK+  A  L + +    + PN +T+NI I   C DE +  A  +F +M+ +G+ 
Sbjct: 272 DGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQ 331

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASILS 236
           PN V + +L+       +  + + L   M     K NV+ Y ++++
Sbjct: 332 PNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 69/110 (62%), Gaps = 4/110 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VTYN ++D LCK+G   KA  L  +M +  +NP+ +TYN+LI G  Y  +GN    
Sbjct: 471 KADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDG--YFREGNSTAA 528

Query: 73  LFIE--MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           L +   M  +G ++++VT+NV++   C   K++EA RLL+ M++ G+ P+
Sbjct: 529 LNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPN 578



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F    D G +   ++ N ++  L K  ++     +   MI+  +       +N+V +  +
Sbjct: 182 FDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRI------GVNVVTFDVV 235

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+GK + A ++ + +   G  P+V+TYN  I   C   +M KA  L  +M  K +
Sbjct: 236 INGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRI 295

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN + F  L+  F R    +   ++   M ++ + P     + +++ L  N
Sbjct: 296 HPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSN 347



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F V   P+ +TYN +IDG  +EG    A  +   M+ +    N+VTYN LI GFC     
Sbjct: 501 FEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKL 560

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
            EA  L  EM+++GL  +  T++++ DE+
Sbjct: 561 EEANRLLNEMLEKGLIPNRTTYDILRDEM 589



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGK 142
           ++ +  ++++    KN +MD A    D     G R  A  C   +V+       L K G+
Sbjct: 157 ANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVS-------LVKEGR 209

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           +     + + + R  +  NVVT+++ I+ LC   +  KA D+  DM+  G +P+ + + T
Sbjct: 210 IGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNT 269

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++  + +  +  K   LL+ M  + + P     +I++D   ++E
Sbjct: 270 IIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDE 313


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 122/218 (55%), Gaps = 6/218 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +YN +I+GLCK   VD+A  L  +M  +N+ P+ VTYNSLI G C +     A  L
Sbjct: 251 PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNL 310

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG  +DVVT+  ++D LCKN+ +D+AT L   M + G++P  +       Y  L
Sbjct: 311 MNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMY------TYTAL 364

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+LKNA+EL Q L   G   +V TY + I  LC +   D+A  +   ME  G 
Sbjct: 365 IDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGC 424

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
            PN V F  ++ S   K+E  K  +LL  M  + ++ +
Sbjct: 425 IPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLGF 462



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y+ IIDGLCK+  V++A +L+ +M    I PNV+TYN+LI  FC A     A  
Sbjct: 147 RPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFS 206

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+ + +  DV TF++++D LCK  K   A ++   M+Q GV P      N+ +Y  
Sbjct: 207 LLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNP------NVYSYNI 258

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCK  ++  A  L + +    ++P+ VTYN  I  LC   ++  A +L  +M  +G
Sbjct: 259 MINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRG 318

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + V +T+L+ +  +     K   L   M +R + P     + ++D L K
Sbjct: 319 QPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCK 370



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 129/238 (54%), Gaps = 16/238 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + N V+Y T+++GLCK G    A +L   ++D +  PNVV Y+++I G C     NEA  
Sbjct: 112 QTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYD 171

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM  R +  +V+T+N ++   C   ++  A  LL  MI   + PD +       +  
Sbjct: 172 LYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVY------TFSI 225

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK G  KNA+++  ++ + G+ PNV +YNI I+ LC  +++D+A +L  +M  K 
Sbjct: 226 LIDALCKEG--KNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKN 283

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVKNE 246
           + P+ V + +L+    +    +  + L+  M  R    +V+ Y S+L    D L KN+
Sbjct: 284 MVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLL----DALCKNQ 337



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + +N I+  L K  +      L  QM  + I  N+VT + LI+ FC+      +  L  +
Sbjct: 11  IEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGK 70

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           ++  G   + +T+  +M  LC      E  +LL       V   AF + N V+YG L++G
Sbjct: 71  ILKLGYXPNTITWTTLMKGLCLK---GEVKKLLHF--HDKVVAQAF-QTNQVSYGTLLNG 124

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK G+ + A +L + +      PNVV Y+  I  LC D+ +++A+DL+ +M+ + + PN
Sbjct: 125 LCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPN 184

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + + TL+ +F    +      LL  M  +N+ P     SI++D L K
Sbjct: 185 VITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCK 232



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 114/230 (49%), Gaps = 8/230 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VT + +I+  C  G +  +  L  ++      PN +T+ +L+ G C   +  +  +  
Sbjct: 44  NLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFH 103

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +++ +  Q++ V++  +++ LCK  +   A +LL ++     RP      N+V Y  +I
Sbjct: 104 DKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRP------NVVMYSAII 157

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK   +  A +L   +    + PNV+TYN  I A C   Q+  A  L  +M +K + 
Sbjct: 158 DGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNIN 217

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+   F+ L+ +  ++ + +K  ++  +M +  V P     +I+++ L K
Sbjct: 218 PDVYTFSILIDALCKEGKNAK--QIFHAMVQMGVNPNVYSYNIMINGLCK 265



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 2/112 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  +P   TY  +IDGLCK G +  A+ELF  +  +    +V TY  +I G C   
Sbjct: 350 KERGI--QPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEG 407

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
             +EA  +  +M D G   + VTF +I+  L +  + D+A +LL  MI  G+
Sbjct: 408 MFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 459



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 6/164 (3%)

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
           S ++ FN I+  L K +       L   M   G+      E N+V    LI+  C +G++
Sbjct: 8   SPIIEFNKILGSLVKLKYYLTVISLSKQMDVKGI------EQNLVTLSILINCFCHLGQM 61

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
             +  L   + + G  PN +T+   +  LC   ++ K       +  +    N V + TL
Sbjct: 62  AFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTL 121

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +    +  ET   I+LLR ++ R+  P   + S I+D L K+++
Sbjct: 122 LNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKL 165


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 134/247 (54%), Gaps = 10/247 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+ID LCK G +++A+ L   M   +  PNVVTY+ LI+G C     +EA  L
Sbjct: 249 PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEAREL 308

Query: 74  FIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR--PDAFCEINIVA 129
             EM  +   +  +++T+N  +D LCK     EA  L+  +  G +R  PD       V 
Sbjct: 309 IQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT------VT 362

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LIDGLCK G++  A  +   +   G +PNV+TYN  ++ LC  ++M++AH +   M 
Sbjct: 363 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 422

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
            KGV P+ + ++ L+ +F + +   + +ELL  M  R   P     + I+D L K++ S 
Sbjct: 423 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSG 482

Query: 250 NSIPQFN 256
            +   F+
Sbjct: 483 EAFQMFD 489



 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 135/250 (54%), Gaps = 13/250 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGNEA 70
           P+ VTYNT+ID LCK G +++A+ L   M         PNVVTY+ LI+G C     +EA
Sbjct: 740 PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEA 799

Query: 71  EYLFIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR--PDAFCEIN 126
             L  EMM +   +  +++T+N  +D LCK   M EA  L+  +  G +R  PD      
Sbjct: 800 RELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDT----- 854

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V +  LIDGLCK G+   A  +   +   G +PNVVTYN+ ++ LC  ++M++AH +  
Sbjct: 855 -VTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIE 913

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M  KGV P+ + ++ L+ +F + +   + +ELL  M  R   P     + I+D L K++
Sbjct: 914 SMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSD 973

Query: 247 ISLNSIPQFN 256
            S  +   F+
Sbjct: 974 QSGEAFQMFD 983



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 140/253 (55%), Gaps = 17/253 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYANDGNE 69
           C PN VTY+ +I+GLCK G +D+A+EL  +M  K  ++ PN++TYNS + G C  +   E
Sbjct: 282 CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAE 341

Query: 70  AEYLFIEMMDRGLQ--SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           A  L   + D  L+   D VTF+ ++D LCK  ++DEA  + D MI GG  P      N+
Sbjct: 342 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVP------NV 395

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + Y  L++GLCK  K++ A  + +S+   G+ P+V+TY++ + A C   ++D+A +L   
Sbjct: 396 ITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG 455

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD-KRNVMPYASILSIIVDLLVKN- 245
           M  +G  PN V F +++    + + + +  ++   M  K  ++P       ++D L +  
Sbjct: 456 MASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTG 515

Query: 246 -----EISLNSIP 253
                E  L+++P
Sbjct: 516 RAGQAEALLDAMP 528



 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 139/253 (54%), Gaps = 17/253 (6%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYANDGNE 69
            C PN VTY+ +I+GLCK G +D+A+EL  +M  K  ++ PN++TYNS + G C  +   E
Sbjct: 776  CVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAE 835

Query: 70   AEYLFIEMMDRGLQ--SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            A  L   + D  L+   D VTF+ ++D LCK  + DEA  + D MI GG  P      N+
Sbjct: 836  ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVP------NV 889

Query: 128  VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            V Y  L++GLCK  K++ A  + +S+   G+ P+V+TY++ + A C    +D+A +L   
Sbjct: 890  VTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHG 949

Query: 188  MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD-KRNVMPYASILSIIVDLLVKN- 245
            M  +G  PN V F +++    + +++ +  ++   M  K  + P       ++D L +  
Sbjct: 950  MASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTG 1009

Query: 246  -----EISLNSIP 253
                 E+ L+++P
Sbjct: 1010 WAGQAEVLLDAMP 1022



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T  +N  I+GL K G V +A +++ +M +  + P+ VT+N LI G C A +  +A  L
Sbjct: 530 PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASAL 589

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ + LQ DV+TF  ++D LCK  +++ A  +LDLM   GV P      N+V Y  L
Sbjct: 590 FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP------NVVTYNAL 643

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK G+++ A +  + +  +G +P+ +TY   ++ALC   + D A  L  +++  G 
Sbjct: 644 VHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGW 703

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V +  L+    +  +T + I +L  M  +   P     + ++D L K
Sbjct: 704 DPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCK 754



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 128/266 (48%), Gaps = 46/266 (17%)

Query: 19  YNTIIDGLCKEGFVDKAKELFL-QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           YN ++  LC+ G   +A E+F  +M  + + P +VTYN++I+G C +N+      LF E+
Sbjct: 183 YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 242

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++RG   DVVT+N ++D LCK   ++EA RL   M      P      N+V Y  LI+GL
Sbjct: 243 VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVP------NVVTYSVLINGL 296

Query: 138 CKIGKLKNARELSQSLTRAG--LMPNVVTYNITIHALCNDE------------------- 176
           CK+G++  AREL Q +TR    ++PN++TYN  +  LC                      
Sbjct: 297 CKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV 356

Query: 177 ------------------QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
                             Q+D+A  +F DM   G  PN + +  L+    + ++  +   
Sbjct: 357 SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHA 416

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           ++ SM  + V P     S++VD   K
Sbjct: 417 MIESMVDKGVTPDVITYSVLVDAFCK 442



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 9/243 (3%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   +   P+ VT+N +I G CK G  ++A  LF +M  +N+ P+V+T+ +LI G C A
Sbjct: 556 NRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKA 615

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A  +   M + G+  +VVT+N ++  LCK+ +++EA + L+ M+  G  PD+   
Sbjct: 616 GQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDS--- 672

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
              + YG L+  LC+  +  +A +L   L   G  P+ VTYNI +  L    Q ++A  +
Sbjct: 673 ---ITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL---LRSMDKRNVMPYASILSIIVDL 241
             +M  KG  P+ V + TL+ S  +  +  +   L   + S   R  +P     S++++ 
Sbjct: 730 LEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLING 789

Query: 242 LVK 244
           L K
Sbjct: 790 LCK 792



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 128/266 (48%), Gaps = 38/266 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDGNEA 70
           C PN VT+N+IIDGLCK     +A ++F  M     + P+ +TY +LI G        +A
Sbjct: 461 CTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQA 520

Query: 71  EYLFIEMMD--------------------RGLQ-----------SDVVTFNVIMDELCKN 99
           E L   M D                    R LQ            D VTFN+++   CK 
Sbjct: 521 EALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKA 580

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
              ++A+ L + M+   ++PD      ++ +G LIDGLCK G+++ AR++   +   G+ 
Sbjct: 581 GNFEQASALFEEMVAKNLQPD------VMTFGALIDGLCKAGQVEAARDILDLMGNLGVP 634

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           PNVVTYN  +H LC   ++++A     +M   G  P+ + + +L+ +  R + T   ++L
Sbjct: 635 PNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQL 694

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKN 245
           +  +      P     +I+VD L K+
Sbjct: 695 VSELKSFGWDPDTVTYNILVDGLWKS 720



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 11/235 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+  +   P+TVT++T+IDGLCK G +D+A  +F  M      PNV+TYN+L++G C A+
Sbjct: 350 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 409

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A  +   M+D+G+  DV+T++V++D  CK  ++DEA  LL  M   G  P      
Sbjct: 410 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP------ 463

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLT-RAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           N+V +  +IDGLCK  +   A ++   +  + GL+P+ +TY   I  L    +  +A  L
Sbjct: 464 NVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEAL 523

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              M      P+   F   +    +  + S+ +++   M +  ++P     +I++
Sbjct: 524 LDAMP----DPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILI 574



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 29/233 (12%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            PN VTYN +++GLCK   +++A  +   M D+ + P+V+TY+ L+  FC A+  +EA  L
Sbjct: 887  PNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALEL 946

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM-IQGGVRPD--AFCEI----- 125
               M  RG   +VVTFN I+D LCK+ +  EA ++ D M ++ G+ PD   +C +     
Sbjct: 947  LHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLF 1006

Query: 126  ------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
                              +  A+ C I+GL K+G +  A      L    L+P+ VT+NI
Sbjct: 1007 RTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELE---LVPDKVTFNI 1063

Query: 168  TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
             I   C     ++A  LF +M  K + P+ + F  L+    +  +     +++
Sbjct: 1064 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 123/271 (45%), Gaps = 41/271 (15%)

Query: 6    REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
            R+  +   P+TVT++T+IDGLCK G  D+A  +F  M      PNVVTYN L++G C  +
Sbjct: 844  RDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTD 903

Query: 66   DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
                A  +   M+D+G+  DV+T++V++D  CK   +DEA  LL  M   G  P      
Sbjct: 904  KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTP------ 957

Query: 126  NIVAYGCLIDGLCKIGKLKNARELSQSLT-RAGLMPNVVTY------------------- 165
            N+V +  +IDGLCK  +   A ++   +T + GL P+ +TY                   
Sbjct: 958  NVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVL 1017

Query: 166  ------------NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
                        N  I+ L     + +A    L++E   + P+ V F  L+    +    
Sbjct: 1018 LDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELE---LVPDKVTFNILIAGACKAGNF 1074

Query: 214  SKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +   L   M  +N+ P       ++D L K
Sbjct: 1075 EQASALFEEMVAKNLQPDVMTFGALIDGLCK 1105


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 133/234 (56%), Gaps = 8/234 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G VC  N V+YNT+I+G CK   +DKA  LF +M  + + PN +TY++LIHG C+     
Sbjct: 296 GCVC--NVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQ 353

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF EM+  G   ++VT+++++D LCKN ++ EA  LL  +    + PD      + 
Sbjct: 354 DAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPD------VQ 407

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y   IDG+C+ G L+ AR+L  +L   GL P+V T+NI I  LC    +D+A  LF +M
Sbjct: 408 VYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREM 467

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +  G   N   + T+    ++ N+TS+ I+LL  M  R      S  +++V +L
Sbjct: 468 DENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKML 521



 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 137/257 (53%), Gaps = 29/257 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY T+++GLCK+  + +A  LF +M  + I+P++ TYNSLIH  C   +      
Sbjct: 158 QPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTT 217

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L  EM+   +  +VV+ N+++D LCK  K+ EA  ++D+MIQGGV PD            
Sbjct: 218 LLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHC 277

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              C  N+V+Y  LI+G CKI ++  A  L + + R  L+PN +
Sbjct: 278 LRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTM 337

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY+  IH LC+  ++  A  LF +M   G  PN V ++ L+    + +  ++ + LL+++
Sbjct: 338 TYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAI 397

Query: 224 DKRNVMPYASILSIIVD 240
           +  N+ P   + +I +D
Sbjct: 398 EGSNLDPDVQVYNIAID 414



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 12/233 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            FG+   P+  T   +I+  C    VD A  +  ++      P+  T+ +L+ G C    
Sbjct: 84  SFGI--PPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGK 141

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA  +F +M+  G Q +VVT+  +M+ LCK+R++ EA  L   MI  G+ PD F    
Sbjct: 142 IGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIF---- 197

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y  LI  LC + + K+   L   + ++ +MPNVV+ NI + ALC + ++ +AHD+  
Sbjct: 198 --TYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVD 255

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
            M   GV P+ V +  LM     ++E  + +++   M +     NV+ Y +++
Sbjct: 256 MMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLI 308



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A   F +M   +  P +  +  L+         +    L  +M   G+  DV T  +
Sbjct: 37  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTI 96

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C   ++D A  +L  +++ G +PD         +  L+ GLC +GK+  A ++  
Sbjct: 97  VINSFCHLNRVDFALSVLAKILKLGHQPDT------ATFTTLVRGLCVVGKIGEALDVFD 150

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  PNVVTY   ++ LC D Q+ +A +LF +M  KG++P+   + +L+ +     
Sbjct: 151 KMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLC 210

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           E   V  LL  M K  +MP    L+I+VD L K
Sbjct: 211 EWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCK 243


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 131/228 (57%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TYN +ID LC +G +D+A  +  QM+      +V+TYN+LI GFC AN   EAE
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAE 490

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM   G+  + VT+N ++D LCK+R++++A +L+D MI  G +PD +       Y 
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY------TYN 544

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G +K A ++ Q++T  G  P++VTY   I  LC   +++ A  L   +++K
Sbjct: 545 SLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMK 604

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           G+      +  ++    RK +T++ I L R M ++N  P  ++   IV
Sbjct: 605 GINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIV 652



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNTVTYNT+I  LCKE  V++A EL   +  + I P+V T+NSLI G C   +   A 
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G + D  T+N+++D LC   K+DEA  +L  M   G      C  +++ Y 
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG------CARSVITYN 474

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK  K + A E+   +   G+  N VTYN  I  LC   +++ A  L   M ++
Sbjct: 475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           G  P+   + +L+  F R  +  K  +++++M      P    Y +++S
Sbjct: 535 GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+NT+++GLCK G V  A E+   M  E  +P+V TYNS+I G C   +  EA  +
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ R    + VT+N ++  LCK  +++EAT L  ++   G+ PD      +  +  L
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD------VCTFNSL 406

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC     + A EL + +   G  P+  TYN+ I +LC+  ++D+A ++   ME+ G 
Sbjct: 407 IQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGC 466

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           A + + + TL+  F + N+T +  E+   M+   V   +   + ++D L K+
Sbjct: 467 ARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKS 518



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 32/254 (12%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EFG+  KP+T  YN +++ L     +   +    +M    I P+V T+N LI   C A+ 
Sbjct: 147 EFGL--KPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQ 204

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG---------V 117
              A  +  +M   GL  D  TF  +M    +   +D A R+ + M++ G         V
Sbjct: 205 LRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264

Query: 118 RPDAFCE-------INIV--------------AYGCLIDGLCKIGKLKNARELSQSLTRA 156
               FC+       +N +               +  L++GLCK G +K+A E+   + + 
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE 324

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+V TYN  I  LC   ++ +A ++   M  +  +PN V + TL+ +  ++N+  + 
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384

Query: 217 IELLRSMDKRNVMP 230
            EL R +  + ++P
Sbjct: 385 TELARVLTSKGILP 398



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYN+++   C+ G + KA ++   M      P++VTY +LI G C A     A  
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIVAYG 131
           L   +  +G+      +N ++  L + RK  EA  L   M+ Q    PDA      V+Y 
Sbjct: 597 LLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDA------VSYR 650

Query: 132 CLIDGLCK-IGKLKNARELSQSLTRAGLMP 160
            +  GLC   G ++ A +    L   G +P
Sbjct: 651 IVFRGLCNGGGPIREAVDFLVELLEKGFVP 680


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 136/234 (58%), Gaps = 7/234 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN ++YNT+I+G CK   +DKA  LF +M  + + PN VTYN+L+H  C+     +A  L
Sbjct: 347 PNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQDAIAL 405

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+  G   D+ T+ +++D LCK   +DEA  LL  +    + PD      I  Y  +
Sbjct: 406 FHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPD------IQIYTIV 459

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG+C+ G+L+ AR++  +L+  GL PNV TY I I+ LC    +D+A+ LF++M+  G 
Sbjct: 460 IDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGC 519

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +P+   + T+    ++  E  + I+LL+ M  R      S  +++V++L  +++
Sbjct: 520 SPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKL 573



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 7/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ V Y +IID LCK+  V +A  LF +M  + I+P++ TY SLIH  C   +     
Sbjct: 205 CQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVT 264

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M++  +  DVV F+ ++D LCK  K+ EA  ++D+MI  GV P      N+V Y 
Sbjct: 265 TLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEP------NVVTYN 318

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C   ++  A ++  ++   G  PNV++YN  I+  C  ++MDKA  LF +M  K
Sbjct: 319 ALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQK 378

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + PN V + TLM            I L   M     +P  +   I++D L K
Sbjct: 379 ELIPNTVTYNTLM-HXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 430



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+ T+I GLC EG +  A  LF +M  E   PNVVTY +LI+G C   + N A  
Sbjct: 136 QPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIR 195

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M     Q DVV +  I+D LCK+R++ EA  L   M+  G+ PD F       Y  
Sbjct: 196 LLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIF------TYTS 249

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC + + K+   L   +  + +MP+VV ++  + ALC + ++ +AHD+   M ++G
Sbjct: 250 LIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRG 309

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V PN V +  LM     ++E  + +++  +M      P
Sbjct: 310 VEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAP 347



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 122/244 (50%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+TV +N ++  + K         L  QM    I P+V T N LI+ 
Sbjct: 54  LSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINS 113

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+ N    A  +  +++  G Q D  TF  ++  LC   K+ +A  L D MI  G +P 
Sbjct: 114 FCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQP- 172

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V YG LI+GLCK+G    A  L +S+ +    P+VV Y   I +LC D Q+ +
Sbjct: 173 -----NVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 227

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF  M  +G++P+   +T+L+ S     E   V  LL  M    +MP   I S +VD
Sbjct: 228 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 287

Query: 241 LLVK 244
            L K
Sbjct: 288 ALCK 291



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 6/182 (3%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           N  ++A   F  M+        V FN ++  + K ++      L + M   G+ PD +  
Sbjct: 48  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVY-T 106

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +NI     LI+  C + +L  A  +   + + G  P+  T+   I  LC + ++  A  L
Sbjct: 107 LNI-----LINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHL 161

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M  +G  PN V + TL+    +   T+  I LLRSM++ N  P   + + I+D L K
Sbjct: 162 FDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 221

Query: 245 NE 246
           + 
Sbjct: 222 DR 223



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY  +I+GLC+ G +D+A +LF++M     +P+  TYN++  G     +   A  
Sbjct: 485 RPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQ 544

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
           L  EM+ RG  +DV T  ++++ LC + K+D++ +
Sbjct: 545 LLQEMLARGFSADVSTTTLLVEMLCDD-KLDQSVK 578


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 29/262 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTYN +ID LCK+  V++A ++F  MK + I+P++ TYNSLI G C      EA 
Sbjct: 231 CQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEAS 290

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            L  EM    +  ++ TFNV++D +CK  K+ EA  +   M + GV PD           
Sbjct: 291 ALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGY 350

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C+ +  +Y  LI G CK  ++  A++L   +   GL P+ 
Sbjct: 351 SLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDN 410

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V YN  IH LC   ++ +A DLF +M   G  P+   ++ L+  F ++    K   L R 
Sbjct: 411 VNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRV 470

Query: 223 MDKRNVMPYASILSIIVDLLVK 244
           M    + P  ++ +I++D + K
Sbjct: 471 MQSTYLKPDIAMYNILIDAMCK 492



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 6/222 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  +YN +I G CK   +D+AK+LF +M  + + P+ V YN+LIHG C      EA+
Sbjct: 371 CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQ 430

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M   G   D+ T+++++D  CK   + +A RL  +M    ++PD      I  Y 
Sbjct: 431 DLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPD------IAMYN 484

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID +CK G LK+AR+L   L   GL+PNV  Y   I+ LC +  +D+A + F +ME  
Sbjct: 485 ILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGD 544

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           G  P+   +  ++  F++  + S+  +L+  M  R  +  A 
Sbjct: 545 GCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAG 586



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+NT+I+GLCK G   +A E F   +     P V TY ++I+G C   +   A  
Sbjct: 162 QPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAG 221

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M + G Q +VVT+N+++D LCK++ ++EA  +   M    + PD F       Y  
Sbjct: 222 LFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIF------TYNS 275

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC   + K A  L   +T   +MPN+ T+N+ + A+C + ++ +A  +F  M   G
Sbjct: 276 LIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMG 335

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           V P+ V +++LM  +  + E  +  +L  +M  +   P A   +I++
Sbjct: 336 VEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILI 382



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 135/242 (55%), Gaps = 6/242 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N ++D +CKEG V +A+ +F  M +  + P+VVTY+SL++G+    +  EA  L
Sbjct: 303 PNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKL 362

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G + D  ++N+++   CK +++DEA +L + MI  G+ PD       V Y  L
Sbjct: 363 FDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDN------VNYNTL 416

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC++G+L+ A++L +++   G +P++ TY++ +   C +  + KA  LF  M+   +
Sbjct: 417 IHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYL 476

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+  ++  L+ +  +        +L   +  + ++P   I + I++ L K  +   ++ 
Sbjct: 477 KPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALE 536

Query: 254 QF 255
            F
Sbjct: 537 AF 538



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEG-FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P  + +  ++  + K G +      L  QM+   ++P++ T + LI  F +    + A  
Sbjct: 92  PCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFS 151

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M+  GLQ D VTFN +++ LCK  K  +A    D     G +P       +  Y  
Sbjct: 152 VFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQP------TVYTYTT 205

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCKIG+   A  L + +  AG  PNVVTYNI I +LC D+ +++A D+F  M+ K 
Sbjct: 206 IINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKR 265

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++P+   + +L+          +   LL  M   N+MP     +++VD + K
Sbjct: 266 ISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICK 317



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 7/187 (3%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGC 132
           F  M+ R     ++ F  ++  + K  +   A   L   ++  G+ PD      I     
Sbjct: 82  FNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPD------IYTLSI 135

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID    + ++  A  +   + + GL P+ VT+N  I+ LC   +  +A + F D E  G
Sbjct: 136 LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASG 195

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             P    +TT++    +  ET+    L + M++    P     +I++D L K+++   ++
Sbjct: 196 CQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEAL 255

Query: 253 PQFNRQK 259
             F+  K
Sbjct: 256 DIFSYMK 262



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   Y TII+ LCKEG +D+A E F  M+ +   P+  +YN +I GF    D + A  L
Sbjct: 513 PNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQL 572

Query: 74  FIEMMDRGLQSDVVT 88
             EM DRG  ++  T
Sbjct: 573 IGEMRDRGFVAEAGT 587


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  153 bits (387), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 137/267 (51%), Gaps = 43/267 (16%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS----------- 56
            G  C  N +TYNT+I G CK G +++A +L  +MK+   +P+VVT++S           
Sbjct: 97  LGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNL 156

Query: 57  ----------------------LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
                                 L+HG C AN  +EA  +  EM +RG+  DVVT+N ++D
Sbjct: 157 SRAMQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLID 216

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
            LCK+ +M+EA +LL+ M++  VRP      N+V Y  LI G CK G    A +L + + 
Sbjct: 217 GLCKSYRMEEARQLLETMVKRKVRP------NLVTYNTLIYGYCKTGCTGLAHQLIERMI 270

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           ++G  P+VVT+N  I   C   ++DKA ++   M+    APN V +  L+         +
Sbjct: 271 QSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRAN 330

Query: 215 KVIELLRSMDKRNVMP----YASILSI 237
           +  ELL  MD R ++P    Y S++ I
Sbjct: 331 EACELLSEMDGRGILPDIITYNSLIGI 357



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  P+ VTYN++IDGLCK   +++A++L   M    + PN+VTYN+LI+G+C    
Sbjct: 201 ERGIV--PDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGC 258

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              A  L   M+  G   DVVTFN ++   C+  K+D+A  +L LM +G       C  N
Sbjct: 259 TGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKG------LCAPN 312

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  LI GLC  G+   A EL   +   G++P+++TYN  I   C + Q+++A  +  
Sbjct: 313 LVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQN 372

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            M  +GV P+ + + TL  + ++     +   LL +M     +P
Sbjct: 373 LMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIP 416



 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 130/237 (54%), Gaps = 6/237 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P++V +N ++ GLCK   + +A+++  +M +  I P+VVTYNSLI G C +    E
Sbjct: 167 VECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEE 226

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L   M+ R ++ ++VT+N ++   CK      A +L++ MIQ G  PD      +V 
Sbjct: 227 ARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPD------VVT 280

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LI G C+  K+  A E+   + +    PN+VTYN+ I  LC+  + ++A +L  +M+
Sbjct: 281 FNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMD 340

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +G+ P+ + + +L+  F R  +  +  ++   M +R V+P       +   L+K+E
Sbjct: 341 GRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSE 397



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 122/244 (50%), Gaps = 9/244 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N++I G C++  +DKA E+   MK     PN+VTYN LI G C A   NEA  L
Sbjct: 276 PDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACEL 335

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG+  D++T+N ++   C+N ++++A ++ +LM++ GV PD       ++Y  L
Sbjct: 336 LSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDG------ISYCTL 389

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
              L K  +   A  L  ++  AG +PN+ T+N  +  LC   ++D+A  L   M   G 
Sbjct: 390 AVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGC 449

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV---KNEISLN 250
            P    +  L+    +        E+L  M    + P  S    IV  L    K +++L+
Sbjct: 450 DPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALH 509

Query: 251 SIPQ 254
              Q
Sbjct: 510 YFDQ 513



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 9/217 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFL-QMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           N  T N ++  L K     +A ++F  ++  ++ + N +TYN+LI GFC A D   A  L
Sbjct: 68  NNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQL 127

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +RG   DVVT + I+  LC    +  A +          R    C  + V +  L
Sbjct: 128 LAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYF--------RESVECAPDSVLFNIL 179

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK  +L  AR++ + ++  G++P+VVTYN  I  LC   +M++A  L   M  + V
Sbjct: 180 VHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKV 239

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V + TL+  + +   T    +L+  M +    P
Sbjct: 240 RPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHP 276



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N++++GLC    +D+A+ L   M+    +P   TY  L+ G C A   ++A+ +
Sbjct: 416 PNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEV 475

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
            + M+  G+Q  V +   I+  L +  K D A    D ++
Sbjct: 476 LVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVV 515



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P   TY  ++ GLCK G VD AKE+ + M  E I P V +  +++H        + 
Sbjct: 447 VGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDL 506

Query: 70  AEYLF 74
           A + F
Sbjct: 507 ALHYF 511


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 125/216 (57%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y+ +I+G CK   VD+A +LF +M  + I PNVVTYNSL+ G C +   + A  L
Sbjct: 336 PDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALEL 395

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG  S+++T+N I+D +CKN  +D+A  LL  + + G++PD F       Y  L
Sbjct: 396 VDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIF------TYTVL 449

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+G+L +A+++ + L   G  PN+ TY   I+  CN    D+   +   M+  G 
Sbjct: 450 INGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGC 509

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN + +  L+ S   K+E  K  +LLR M  R ++
Sbjct: 510 IPNAITYEILIHSLFEKDENDKAEKLLREMIARGLL 545



 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 133/234 (56%), Gaps = 10/234 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V Y+TIID +CK+  V+ A +L+ +M  + I+P+VVTY+SLI GFC      
Sbjct: 191 GKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLK 250

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  LF  M+   +  +V TF++++D  CK  K+ EA  +L +M++  V+ D      +V
Sbjct: 251 YAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLD------VV 304

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ L   + + G+ P+V +Y+I I+  C  + +D+A  LF +M
Sbjct: 305 TYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEM 364

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSII 238
             K + PN V + +L+    +   TS  +EL+  M  R    N++ Y SIL  I
Sbjct: 365 HCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAI 418



 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T++ +IDG CKEG V +AK +   M  +N+  +VVTYNSL+ G+C     N+A+ L
Sbjct: 266 PNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSL 325

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  RG+  DV +++++++  CK + +DEA +L + M    + P      N+V Y  L
Sbjct: 326 FNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFP------NVVTYNSL 379

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+   A EL   +   G   N++TYN  + A+C +  +DKA  L   ++ KG+
Sbjct: 380 VDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGI 439

Query: 194 APNCVIFTTLMPSFI---RKNETSKVIE-LLRSMDKRNVMPYASILS 236
            P+   +T L+       R ++  KV E LL      N+  Y S+++
Sbjct: 440 QPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLIN 486



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V+Y T+I+GLC+ G    A +L  ++  + + PNVV Y+++I   C     N+A  L+
Sbjct: 162 DQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLY 221

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ + +  DVVT++ ++   C   K+  A  L + MI   + P      N+  +  LI
Sbjct: 222 CEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINP------NVYTFSILI 275

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK GK++ A+ +   + +  +  +VVTYN  +   C  +Q++KA  LF  M  +GV 
Sbjct: 276 DGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVT 335

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+   ++ ++  F +     + ++L   M  + + P     + +VD L K+
Sbjct: 336 PDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKS 386



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +  I+  L K      A  L  QM+   I P+ +T N L++ F        +  +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +++ +G   D VTF +++  LC   ++ +A    D ++  G + D       V+YG L
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ------VSYGTL 169

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLC++G+ K A +L + +    + PNVV Y+  I ++C D+ ++ A DL+ +M  K +
Sbjct: 170 INGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRI 229

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+ V +++L+  F    +    ++L   M   N+ P     SI++D   K
Sbjct: 230 SPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCK 280



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 122/261 (46%), Gaps = 29/261 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +T N +++   + G +  +  +F ++  +  +P+ VT+  LI G C   + ++A Y
Sbjct: 90  KPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALY 149

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------------- 119
              +++ +G Q D V++  +++ LC+  +   A +LL  +    VRP             
Sbjct: 150 FHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMC 209

Query: 120 ---------DAFCEI-------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                    D +CE+       ++V Y  LI G C +GKLK A +L   +    + PNV 
Sbjct: 210 KDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVY 269

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T++I I   C + ++ +A ++   M  K V  + V + +LM  +    + +K   L   M
Sbjct: 270 TFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVM 329

Query: 224 DKRNVMPYASILSIIVDLLVK 244
            +R V P     SI+++   K
Sbjct: 330 AQRGVTPDVWSYSIMINGFCK 350



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 66/112 (58%), Gaps = 2/112 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  +P+  TY  +I+GLCK G +D A+++F  +  +  +PN+ TY SLI+GFC   
Sbjct: 435 KEKGI--QPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKG 492

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
             +E   +  +M D G   + +T+ +++  L +  + D+A +LL  MI  G+
Sbjct: 493 FFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           + F  I+  L K ++   A  L   M   G++PD F   N+     L++   ++G +K +
Sbjct: 59  IEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPD-FITCNL-----LMNCFSQLGHIKFS 112

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
             +   + + G  P+ VT+ I I  LC   ++ KA      +  +G   + V + TL+  
Sbjct: 113 FSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLING 172

Query: 207 FIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
             R  ET   ++LLR +D + V P   + S I+D + K+++
Sbjct: 173 LCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKL 213


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 134/265 (50%), Gaps = 29/265 (10%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C+P+ VTY+T+ID LCK+  V++A ++F  MK + I+P VV+Y SLI G C  +   E
Sbjct: 225 VGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKE 284

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF------- 122
           A  +  EM    +  D+VTF++++D  CK   + EA  +L  M + GV P+         
Sbjct: 285 ASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMH 344

Query: 123 ----------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
                                 C+ ++ +Y  LI+G C + ++  A++L   +   GL P
Sbjct: 345 GYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTP 404

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           N V+Y   IHA C   ++ +A +LF DM   G  P+   ++ L+  F ++    K   L 
Sbjct: 405 NTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLF 464

Query: 221 RSMDKRNVMPYASILSIIVDLLVKN 245
           R+M    + P   + +I++D + K+
Sbjct: 465 RAMQGTYLKPNLVMYTILIDSMCKS 489



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 134/244 (54%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT++ +ID  CKEG V +A+ +   M +  + PNV+TYNSL+HG+    +  EA  L
Sbjct: 299 PDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKL 358

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ RG + DV +++++++  C  +++DEA +L + MI  G+ P      N V+Y  L
Sbjct: 359 FDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTP------NTVSYTTL 412

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I   C++GKL+ AREL + +   G +P++ TY++ +   C    + KA  LF  M+   +
Sbjct: 413 IHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYL 472

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN V++T L+ S  +    +   +L   +    + P   I + I++ L K  +   ++ 
Sbjct: 473 KPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALE 532

Query: 254 QFNR 257
            F +
Sbjct: 533 AFRK 536



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 117/216 (54%), Gaps = 6/216 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  +Y+ +I+G C    +D+AK+LF +M  + + PN V+Y +LIH FC      EA 
Sbjct: 367 CKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREAR 426

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M   G   D+ T++V+++  CK   + +A RL   M    ++P      N+V Y 
Sbjct: 427 ELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKP------NLVMYT 480

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID +CK G L +AR+L   L   GL P+V  Y   I+ LC +  +D+A + F  ME  
Sbjct: 481 ILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEED 540

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           G  PN   +  ++  F++  + S+ ++L+  M  + 
Sbjct: 541 GCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKG 576



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  +T+ T+I+GLCK G   +A ELF  M      P+V TY ++I+G C   +   A  
Sbjct: 158 QPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAG 217

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M + G Q DVVT++ ++D LCK+R ++EA  +   M   G+ P       +V+Y  
Sbjct: 218 LIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISP------TVVSYTS 271

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC   + K A  +   +T   +MP++VT+++ I   C +  + +A  +   M   G
Sbjct: 272 LIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMG 331

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V PN + + +LM  +  + E  +  +L   M  R   P     SI+++
Sbjct: 332 VEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILIN 379



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 13/235 (5%)

Query: 14  PNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P  + +N ++  + +   + D    L  QM+   ++PN  T N LI+ FC     +    
Sbjct: 88  PCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFS 147

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++  GLQ  ++TF  +++ LCK  +  +A  L D M+  G +PD +       Y  
Sbjct: 148 VLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVY------TYTT 201

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCK+G+   A  L + +   G  P+VVTY+  I +LC D  +++A D+F  M+ KG
Sbjct: 202 IINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKG 261

Query: 193 VAPNCVIFTTLMP---SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++P  V +T+L+    SF R  E S    +L  M   N+MP     S+++D+  K
Sbjct: 262 ISPTVVSYTSLIQGLCSFSRWKEASA---MLNEMTSLNIMPDIVTFSLLIDIFCK 313



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 45/73 (61%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   Y TII+GLCKEG +D+A E F +M+++   PN  +YN +I GF    D + A  
Sbjct: 508 QPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQ 567

Query: 73  LFIEMMDRGLQSD 85
           L  EM D+G  +D
Sbjct: 568 LIGEMRDKGFVAD 580



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 7/187 (3%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKM-DEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F  M+ R     ++ FN ++  + + R+  D    L   M   G+ P+  C +NI     
Sbjct: 78  FNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNT-CTLNI----- 131

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+  C +  +     +   + + GL P ++T+   I+ LC   +  +A +LF DM  +G
Sbjct: 132 LINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARG 191

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             P+   +TT++    +  ET+    L++ M +    P     S ++D L K+ +   ++
Sbjct: 192 CQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEAL 251

Query: 253 PQFNRQK 259
             F+  K
Sbjct: 252 DIFSYMK 258



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   KPN V Y  +ID +CK G ++ A++LF ++    + P+V  Y ++I+G C     +
Sbjct: 469 GTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLD 528

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           EA   F +M + G   +  ++NVI+    +++    A +L+  M   G   D
Sbjct: 529 EALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 129/245 (52%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ V++  +ID LCK G VD A   F QM +E + PN+  ++SL++G C      +AE 
Sbjct: 368 SPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEE 427

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF E++D+G+  D V FN +M  LC   ++ EA RL+DLMI+ GVRP      N+++Y  
Sbjct: 428 LFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRP------NVISYNT 481

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G C  G++  A +L   +   GL PN  TY I +   C   ++D A+ LF +M +KG
Sbjct: 482 LVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKG 541

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           V P    + T++    +    S+  EL  +M            +II++ L KN     + 
Sbjct: 542 VTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAF 601

Query: 253 PQFNR 257
             F R
Sbjct: 602 KMFRR 606



 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EFG  C P+ V YNT+I+G  +EG V+KA  LFL+M D+ I PNVVTY ++I G C A  
Sbjct: 154 EFG--CPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQV 211

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A+ +F +M+DRG++ D  T+N ++       K  E  ++L+ M   G+ PD      
Sbjct: 212 VDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDC----- 266

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            + Y  L+D LCK G+ + AR    S+ R G+ P+V  Y I +H       + + H  FL
Sbjct: 267 -ITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHS-FL 324

Query: 187 DMEV-KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           D+ V  GV+PN  IF  +  ++ +K    + + +   M ++ + P       ++D L K 
Sbjct: 325 DLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKL 384

Query: 246 EISLNSIPQFNR 257
               +++ QFN+
Sbjct: 385 GRVDDAVLQFNQ 396



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 133/264 (50%), Gaps = 11/264 (4%)

Query: 1   MANGNREFGVVCKP----NTVTYNTIIDGLCKEGFVDKAKE-LFLQMKDENINPNVVTYN 55
           + +G   FG++ K     N +  + ++ GLC    VD+A + L L+M +    P+VV YN
Sbjct: 106 LEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYN 165

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           ++I+GF       +A  LF+EMMD+G+  +VVT+  ++D LCK + +D A  +   MI  
Sbjct: 166 TVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDR 225

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           GV+PD         Y CLI G    GK K   ++ + ++  GL P+ +TY + +  LC +
Sbjct: 226 GVKPDN------GTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKN 279

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            +  +A   F  M  KG+ P+  I+  L+  +  K   S++   L  M    V P   I 
Sbjct: 280 GRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIF 339

Query: 236 SIIVDLLVKNEISLNSIPQFNRQK 259
           +I+     K  +   ++  FN+ +
Sbjct: 340 NIMFCAYAKKAMIEEAMHIFNKMR 363



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+IDGLCK   VD+AK +F QM D  + P+  TYN LIHG+       E   +
Sbjct: 194 PNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQM 253

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GL+ D +T+ +++D LCKN +  EA    D M + G++PD      +  Y  L
Sbjct: 254 LEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPD------VAIYAIL 307

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L         +   G+ PN   +NI   A      +++A  +F  M  +G+
Sbjct: 308 LHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGL 367

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +P+ V F  L+ +  +       +     M    V P   + S +V
Sbjct: 368 SPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLV 413



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 8/247 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY  ++ G CK   VD A  LF +M  + + P V TYN+++HG       +EA  
Sbjct: 508 KPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANE 567

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M++   + D+ T+N+I++ LCKN  +DEA ++   +     + D+      V +  
Sbjct: 568 LYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDS------VTFNI 621

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K G+ ++A +L  +++  GL+P+VVTY +    L  +  + +   LF  ME  G
Sbjct: 622 MIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSG 681

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS--LN 250
            APN  +   L+   + + + S+    L  +D++N    AS  S+++ L  + E      
Sbjct: 682 TAPNSHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHAK 741

Query: 251 SIPQFNR 257
           S+P+  R
Sbjct: 742 SLPEKYR 748



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 129/317 (40%), Gaps = 83/317 (26%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG------------ 60
           +P+ +TY  ++D LCK G   +A+  F  M  + I P+V  Y  L+HG            
Sbjct: 263 EPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHS 322

Query: 61  --------------------FC-YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                               FC YA      EA ++F +M  +GL  DVV+F  ++D LC
Sbjct: 323 FLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALC 382

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL-------- 149
           K  ++D+A    + MI  GV P      NI  +  L+ GLC +GK + A EL        
Sbjct: 383 KLGRVDDAVLQFNQMINEGVTP------NIFVFSSLVYGLCTVGKWEKAEELFFEVLDQG 436

Query: 150 -----------------------SQSL----TRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                                  +Q L     R G+ PNV++YN  +   C   ++D+A 
Sbjct: 437 ICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAA 496

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            L   M   G+ PN   +T L+  + +         L R M  + V P  +  + I+  L
Sbjct: 497 KLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGL 556

Query: 243 VK-------NEISLNSI 252
            +       NE+ LN I
Sbjct: 557 FQTGRFSEANELYLNMI 573



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 1/181 (0%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +EA  LF E++     + V  FN ++  + +      + R++ L  +      +    N 
Sbjct: 31  DEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPNA 90

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD-LFL 186
             Y  LI   C++G+L++       + + G   NV+  +  +  LC+ +++D+A D L L
Sbjct: 91  CTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLL 150

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M   G  P+ V + T++  F R+ +  K   L   M  + + P     + ++D L K +
Sbjct: 151 RMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQ 210

Query: 247 I 247
           +
Sbjct: 211 V 211


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 142/251 (56%), Gaps = 6/251 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + KPN   YNTIID LCK   V +A  LF +M  + I+ +VVTY +LI+GFC A+   
Sbjct: 192 GRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLK 251

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM+ + +  +V T+N+++D LCK  K+ EA  +L +M++  V+PD      ++
Sbjct: 252 EAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPD------VI 305

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG   + +LK A+ +  +++  G+ P+V +Y I I+  C ++ +D+A +LF +M
Sbjct: 306 TYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEM 365

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             K + P  V +++L+    +    S V +L+  M  R +       + ++D L KN   
Sbjct: 366 HQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHL 425

Query: 249 LNSIPQFNRQK 259
             +I  FN+ K
Sbjct: 426 DRAIALFNKMK 436



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  +I+G CK   VD+A  LF +M  +N+ P +VTY+SLI G C +   +    L
Sbjct: 337 PDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDL 396

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG+ ++V+T+N ++D LCKN  +D A  L + M   G+RP +F       +  L
Sbjct: 397 IDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSF------TFTIL 450

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+LK+A+E  Q L   G   +V  YN+ I+  C    +++A  +   ME  G 
Sbjct: 451 LDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGC 510

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN V F  ++ +  +K+E  K  +LLR M  R ++
Sbjct: 511 VPNAVTFDIIINALFKKDENDKAEKLLRQMICRGLL 546



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 123/262 (46%), Gaps = 29/262 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN ++D LCKEG V +AK +   M    + P+V+TY++L+ G+    +  +A+++
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHV 326

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
           F  M   G+  DV ++ ++++  CKN+ +DEA  L   M Q  + P         D  C+
Sbjct: 327 FNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                N++ Y  LIDGLCK G L  A  L   +   G+ P   T
Sbjct: 387 SGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFT 446

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           + I +  LC   ++  A + F D+  KG   +   +  ++    ++    + + +L  M+
Sbjct: 447 FTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKME 506

Query: 225 KRNVMPYASILSIIVDLLVKNE 246
           +   +P A    II++ L K +
Sbjct: 507 ENGCVPNAVTFDIIINALFKKD 528



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   +   P  + +N I+D   K      A  L  +++ + I P+++T N LI+ FC+ 
Sbjct: 48  NRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHM 107

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                   +  +++ RG Q   +TF  ++  LC   ++++A    D ++  G++ D    
Sbjct: 108 GQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQ--- 164

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
              V+YG LI+G+CKIG  + A +L + +      PNV  YN  I ALC  + + +A+ L
Sbjct: 165 ---VSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGL 221

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +M  KG++ + V +TTL+  F   ++  + I LL  M  + + P     +I+VD L K
Sbjct: 222 FSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 118/235 (50%), Gaps = 6/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+T+ T+I GLC +G V+KA     ++  + I  + V+Y +LI+G C   D   A  
Sbjct: 126 QPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIK 185

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  ++  R  + +V  +N I+D LCK + + EA  L   M   G+  D      +V Y  
Sbjct: 186 LVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISAD------VVTYTT 239

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C   KLK A  L   +    + PNV TYNI + ALC + ++ +A ++   M    
Sbjct: 240 LIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKAC 299

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           V P+ + ++TLM  +    E  K   +  +M    V P     +I+++   KN++
Sbjct: 300 VKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKM 354



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 6/162 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           ++ FN I+D   K +    A  L   +   G++PD      ++    LI+  C +G++  
Sbjct: 59  IIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPD------LITLNILINCFCHMGQITF 112

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
              +   + + G  P+ +T+   I  LC   Q++KA      +  +G+  + V + TL+ 
Sbjct: 113 GFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLIN 172

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              +  +T   I+L+R +D R   P   + + I+D L K ++
Sbjct: 173 GVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQL 214



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 59/105 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P + T+  ++DGLCK G +  A+E F  +  +  + +V  YN +I+G C      EA  
Sbjct: 441 RPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALT 500

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           +  +M + G   + VTF++I++ L K  + D+A +LL  MI  G+
Sbjct: 501 MLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGL 545


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN V Y TIID LCK+  V+ A +L  +M D  I P+VVTY++++HGFC     NEA 
Sbjct: 228 CKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEAT 287

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ R +  + VTF +++D LCK   + EA  + + M + G  P+A+       Y 
Sbjct: 288 ILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAY------TYN 341

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C   ++  A+++   +   G  P V +YNI I+  C   ++D+A  L ++M  K
Sbjct: 342 ALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEK 401

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + P+ V ++TLM    +     + + L + M    ++P     S ++D L K+
Sbjct: 402 ELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKH 455



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 131/236 (55%), Gaps = 6/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   +YN +I+G CK   +D+AK L ++M ++ + P+ VTY++L+ G C      EA 
Sbjct: 368 CAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEAL 427

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM   GL  D++T++ ++D LCK+  +DEA +LL  M +  + PD      IV Y 
Sbjct: 428 NLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPD------IVLYN 481

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G+   GKL+ A+EL   L   G+ P + TY I I  L  +   D+A++LF  ME  
Sbjct: 482 ILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDD 541

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           G  PN   +  ++  F++  ++S  I L+  M  +     +S   +++DL  ++EI
Sbjct: 542 GFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDLESRDEI 597



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 132/246 (53%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVT+  ++DGLCKEG V +A+ +F  M  +   PN  TYN+L+ G+C  N  +EA+ +
Sbjct: 300 PNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKV 359

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+D+G    V ++N++++  CK R++DEA  LL  M +  + PD       V Y  L
Sbjct: 360 LDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDT------VTYSTL 413

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC++G+ + A  L + +  +GL+P+++TY+  +  LC    +D+A  L   M+   +
Sbjct: 414 MQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKI 473

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V++  L+       +     EL   +    + P     +I++  L+K  +S  +  
Sbjct: 474 EPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYE 533

Query: 254 QFNRQK 259
            F + +
Sbjct: 534 LFRKME 539



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ ++Y+T+I+GLCK G    A +L  +M+++   PN+V Y ++I   C     N+A  
Sbjct: 194 QPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMD 253

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+DRG+  DVVT++ I+   C    ++EAT L + M+   V P      N V +  
Sbjct: 254 LLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMP------NTVTFTI 307

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGLCK G +  AR + +++T+ G  PN  TYN  +   C + QMD+A  +   M  KG
Sbjct: 308 LVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKG 367

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            AP    +  L+  + ++    +   LL  M ++ + P
Sbjct: 368 CAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTP 405



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 125/235 (53%), Gaps = 6/235 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           + F +  +P+ +T+NT+I+G C EG + +A  LF +M      P+V++Y+++I+G C + 
Sbjct: 152 KMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSG 211

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + + A  L  +M ++G + ++V +  I+D LCK+  +++A  LL  M+  G+ PD     
Sbjct: 212 NTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPD----- 266

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y  ++ G C +G L  A  L   +    +MPN VT+ I +  LC +  + +A  +F
Sbjct: 267 -VVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVF 325

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             M  KG  PN   +  LM  +   N+  +  ++L  M  +   P     +I+++
Sbjct: 326 EAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILIN 380



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V +   +  + K+        L  QM    +  NV + N LI+  C  N    A  
Sbjct: 89  RPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAIS 148

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M   G+Q D +TFN +++  C   ++ EA  L + M++ G +PD      +++Y  
Sbjct: 149 VLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPD------VISYST 202

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCK G    A +L + +   G  PN+V Y   I +LC D  ++ A DL  +M  +G
Sbjct: 203 VINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRG 262

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V ++T++  F      ++   L   M  RNVMP     +I+VD L K
Sbjct: 263 IPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCK 314



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 83/174 (47%), Gaps = 6/174 (3%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+    +  VV F   +  + K ++      L + M   GV        N+ +   L
Sbjct: 80  FYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTH------NVYSLNIL 133

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ LC++  +  A  +   + + G+ P+ +T+N  I+  C + ++ +A  LF +M  +G 
Sbjct: 134 INCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGH 193

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            P+ + ++T++    +   TS  ++LLR M+++   P     + I+D L K+ +
Sbjct: 194 QPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTL 247


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 137/249 (55%), Gaps = 11/249 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDK---AKELFLQMKDENINPNVVTYNSLIHGFC 62
           + +G+   PN VTYNT++DG CK G   K   A+    +M    I PN VT+N+LI GFC
Sbjct: 227 KAWGI--SPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFC 284

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
              +   A+  F EM  +GL+ ++VT+N +++ LC N K++EA  L D M+  G++P   
Sbjct: 285 KDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKP--- 341

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              NIV Y  LI+G CK   +K A ++   +++  L+PNV+T+N  I A C +  M++  
Sbjct: 342 ---NIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGF 398

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            L   M  +G+ PN   +  L+    RK +     ELL  M+ + +       +I++D L
Sbjct: 399 SLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGL 458

Query: 243 VKNEISLNS 251
            KN+ S N+
Sbjct: 459 CKNDKSRNA 467



 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/187 (41%), Positives = 108/187 (57%), Gaps = 6/187 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +T+NT+ID  CKEG +++   L   M DE I PNV TYN LI G C   D   A+ L
Sbjct: 376 PNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKEL 435

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM ++GL+ DVVT+N+++D LCKN K   A +LL+ M   G++P      N V Y  L
Sbjct: 436 LNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKP------NHVTYNTL 489

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG C  GKLK A  +   + +    PNVVTYN+ I   C   +++ A+ L  +M  KG+
Sbjct: 490 MDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGL 549

Query: 194 APNCVIF 200
            PN   +
Sbjct: 550 NPNRTTY 556



 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 131/244 (53%), Gaps = 10/244 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN++I+GLC  G +++A +L+ +M    + PN+VTYN+LI+GFC      EA  
Sbjct: 305 KPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATK 364

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F ++  + L  +V+TFN ++D  CK   M+E   L   M+  G+ P      N+  Y C
Sbjct: 365 VFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILP------NVSTYNC 418

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+   L+ A+EL   +   GL  +VVTYNI I  LC +++   A  L  +M   G
Sbjct: 419 LIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLG 478

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + PN V + TLM  +  + +    + +   M+K    P      +  ++L+K    +N +
Sbjct: 479 LKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNV----VTYNVLIKGYCKINKL 534

Query: 253 PQFN 256
              N
Sbjct: 535 EAAN 538



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 127/235 (54%), Gaps = 9/235 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN---EAE 71
           N  T+N  I+GLC+ G ++KA++    MK   I+PNVVTYN+L+ G+C         +AE
Sbjct: 199 NLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAE 258

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               EM+   +  + VTFN ++D  CK+  +  A +  + M + G++P      NIV Y 
Sbjct: 259 AFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKP------NIVTYN 312

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLC  GKL+ A +L   +   GL PN+VTYN  I+  C  + M +A  +F D+  +
Sbjct: 313 SLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQ 372

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            + PN + F T++ ++ ++    +   L  SM    ++P  S  + ++  L + +
Sbjct: 373 ELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQ 427



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++  L KE  +   + ++ +M    I+ N+ T+N  I+G C A   N+AE    +M  
Sbjct: 169 NPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKA 228

Query: 80  RGLQSDVVTFNVIMDELCKN---RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
            G+  +VVT+N ++D  CK     KM +A   +  M+   + P      N V +  LIDG
Sbjct: 229 WGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICP------NEVTFNTLIDG 282

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK   +  A++  + + + GL PN+VTYN  I+ LCN+ ++++A DL+  M   G+ PN
Sbjct: 283 FCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPN 342

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V +  L+  F +K    +  ++   + K+ ++P     + ++D   K
Sbjct: 343 IVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 13/209 (6%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A E F + KD     ++ + N L+      N   + EY++ EM+ R + +++ TFN+ ++
Sbjct: 149 AYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFIN 208

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK---IGKLKNARELSQ 151
            LC+  K+++A   ++ M   G+ P      N+V Y  L+DG CK    GK+  A    +
Sbjct: 209 GLCRAGKLNKAEDAIEDMKAWGISP------NVVTYNTLVDGYCKRGSAGKMYKAEAFMK 262

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +    + PN VT+N  I   C DE +  A   F +M+ +G+ PN V + +L+       
Sbjct: 263 EMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNG 322

Query: 212 ETSKVIELLRSMD----KRNVMPYASILS 236
           +  + I+L   M     K N++ Y ++++
Sbjct: 323 KLEEAIDLWDKMVGLGLKPNIVTYNALIN 351



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 55/92 (59%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N  F +  KPN VTYNT++DG C EG +  A  +  +M+ E   PNVVTYN LI G+C  
Sbjct: 472 NEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKI 531

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           N    A  L  EM+++GL  +  T++++  E+
Sbjct: 532 NKLEAANGLLNEMLEKGLNPNRTTYDIVRLEM 563



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L K  K+ +   + + + +  +  N+ T+NI I+ LC   +++KA D   DM+  G
Sbjct: 171 LLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWG 230

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIE---LLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++PN V + TL+  + ++    K+ +    ++ M    + P     + ++D   K+E
Sbjct: 231 ISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDE 287


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 121/217 (55%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+++I+G C    +D+AK +F  M  ++  PNVVTYN+LI+GFC A   +E   L
Sbjct: 363 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVEL 422

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  + VT+  ++    + R  D A  +   M+  GV P      NI+ Y  L
Sbjct: 423 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHP------NIMTYNTL 476

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK GKL+ A  + + L R+ + P + TYNI I  +C   +++   DLF  + +KGV
Sbjct: 477 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 536

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ +I+ T++  F RK    +   L R M +   +P
Sbjct: 537 KPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLP 573



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + N V Y+T+ID LCK    D A  LF +M+++ + PNV+TY+SLI   C     ++A  
Sbjct: 257 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASR 316

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  +VVTFN ++D   K  K+ EA +L D MI+  + PD F       Y  
Sbjct: 317 LLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF------TYSS 370

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+ + + +      PNVVTYN  I+  C  +++D+  +LF +M  +G
Sbjct: 371 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRG 430

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V +TTL+  F +  +      + + M    V P     + ++D L KN
Sbjct: 431 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 483



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 6/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I+G CK   +D+  ELF +M    +  N VTY +LIHGF  A D + A+
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 455

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  +++T+N ++D LCKN K+++A  + + + +  + P       I  Y 
Sbjct: 456 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP------TIYTYN 509

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++  +L  SL+  G+ P+V+ YN  I   C     ++A  LF  M   
Sbjct: 510 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMRED 569

Query: 192 GVAPN 196
           G  P+
Sbjct: 570 GPLPD 574



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN +I+  C+   +  A  L  +M      P++VT +SL++G+C+    ++A  L 
Sbjct: 119 NLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 178

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M++ G + D +TF  ++  L  + K  EA  L+D M+Q G +P      N+V YG ++
Sbjct: 179 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP------NLVTYGVVV 232

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G +  A  L   +  A +  NVV Y+  I +LC     D A +LF +ME KGV 
Sbjct: 233 NGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 292

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           PN + +++L+         S    LL  M +R + P     + ++D  VK
Sbjct: 293 PNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK 342



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    +  A  L  QM +    P+ +T+ +LIHG    N  +EA  
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ RG Q ++VT+ V+++ LCK   +D A  LL+ M    +      E N+V Y  
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI------EANVVIYST 265

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK     +A  L   +   G+ PNV+TY+  I  LCN E+   A  L  DM  + 
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + PN V F  L+ +F+++ +  +  +L   M KR++ P    Y+S++
Sbjct: 326 INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 372



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   +N ++  + K    D    L  +M+   I+ N+ TYN LI+ FC  +  + A  L
Sbjct: 83  PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM  G +  +VT + +++  C  +++ +A  L+D M++ G RPD       + +  L
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT------ITFTTL 196

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL    K   A  L   + + G  PN+VTY + ++ LC    +D A +L   ME   +
Sbjct: 197 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI 256

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
             N VI++T++ S  +       + L   M+ + V P    Y+S++S
Sbjct: 257 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 303



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 61/108 (56%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYNT++DGLCK G ++KA  +F  ++   + P + TYN +I G C A    +   L
Sbjct: 468 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 527

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           F  +  +G++ DV+ +N ++   C+    +EA  L   M + G  PD+
Sbjct: 528 FCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDS 575


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V Y  +I GLC E  + +A+ +F  M++  + PN+ TYN+++ G+C      +A  L
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALEL 285

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+  GL  +VVTF +++D LCK  +M  A + L  M   GV P      NI  Y CL
Sbjct: 286 YXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP------NIFVYNCL 339

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L  A  L   + +  ++P+V TY+I I  LC  ++M++A  L  +M+ KG 
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN V + TL+  + ++    K IE+   M ++ + P     S ++D
Sbjct: 400 LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 128/242 (52%), Gaps = 6/242 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+  +IDGLCK   +  A++  + M    + PN+  YN LI G+C A + +EA  L
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+    +  DV T+++++  LC   +M+EA  LL  M + G  P+A      V Y  L
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNA------VTYNTL 409

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G ++ A E+   +T  G+ PN++T++  I   C   +M+ A  L+ +M +KG+
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V +T L+    +   T +   L + M +  + P    LS ++D L K+    ++I 
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529

Query: 254 QF 255
            F
Sbjct: 530 LF 531



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 19/239 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYNT+IDG CKEG ++KA E+  QM ++ I PN++T+++LI G+C A     A  L
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+ +GL  DVV +  ++D   K+    EA RL   M + G+ P      N+    CL
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHP------NVFTLSCL 514

Query: 134 IDGLCKIGKLKNAREL-------------SQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           IDGLCK G++ +A +L             +  L R+   PN V Y   I  LC D ++ K
Sbjct: 515 IDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFK 574

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           A   F DM   G+ P+      ++    R      V+ L   + K  ++P +S+  ++ 
Sbjct: 575 ASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLA 633



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P     N ++DGL K+G  D   +++  M     +PNVVTY +LI G C   D  +A  L
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+++ +   VV + +++  LC   ++ EA  +   M   G+ P      N+  Y  +
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLP------NLYTYNTM 269

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CKI  +K A EL   +   GL+PNVVT+ I I  LC  ++M  A    +DM   GV
Sbjct: 270 MDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PN  ++  L+  + +    S+ + L   ++K  ++P     SI++
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 117/235 (49%), Gaps = 17/235 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EA 70
           +PN +T++T+IDG CK G ++ A  L+ +M  + + P+VV Y +LI G  +  DGN  EA
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG--HFKDGNTKEA 492

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG----GVRPD----AF 122
             L  EM + GL  +V T + ++D LCK+ ++ +A +L  L   G    G + +    + 
Sbjct: 493 FRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF-LAKTGTDTTGSKTNELDRSL 551

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           C  N V Y  LI GLC  G++  A +    +  +GL P+V T  + I        +    
Sbjct: 552 CSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVM 611

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSF----IRKNETSKVIELLRSMDKRNVMPYAS 233
            L  D+   G+ PN  ++  L   +      K+  S   E ++ +D+ N  P+ S
Sbjct: 612 MLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGEGVQPLDRVNSEPWGS 666



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 11/206 (5%)

Query: 41  QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           +++     PNV  +  LI  F       EA +++ +M    +   +   N+++D L K  
Sbjct: 118 RLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKKG 172

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           + D   ++   M+  G  P      N+V YG LIDG C+ G    A  L   +    + P
Sbjct: 173 RFDTMWKVYGDMVARGASP------NVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFP 226

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            VV Y I I  LC + ++ +A  +F  M   G+ PN   + T+M  + +     K +EL 
Sbjct: 227 TVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELY 286

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNE 246
             M    ++P      I++D L K +
Sbjct: 287 XEMLGDGLLPNVVTFGILIDGLCKTD 312



 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C PN V Y  +I GLC +G + KA + F  M+   + P+V T   +I G         A
Sbjct: 551 LCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHF------RA 604

Query: 71  EYLFIEMMDRGLQSDVVTFNVI 92
            +L   MM   LQ+D++   +I
Sbjct: 605 MHLRDVMM---LQADILKMGII 623



 Score = 40.4 bits (93), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 34/171 (19%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N++I+   K G +  A+ LF    D     +V T+ S+I G        EA  LF EM +
Sbjct: 788 NSLINMYSKCGEIGTARRLF----DGTQKKDVTTWTSMIVGHALHGQAEEALQLFTEMKE 843

Query: 80  RG-----------------LQSDVVTFNVIMDELCKNRKM-DEATRLLDLMIQG-GVRPD 120
                              L +DV    V+M   C +  + +E  +    M +   +RP 
Sbjct: 844 TNKRARKNKRNGEXESSLVLPNDVTFMGVLM--ACSHAGLVEEGKQHFRSMKEDYSLRP- 900

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
                 I  +GC++D LC+ G L  A E    + +  + PN V +   + A
Sbjct: 901 -----RISHFGCMVDLLCRAGLLTEAYEF---ILKMPVRPNAVVWRTLLGA 943



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 20/138 (14%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN-------------- 46
           +    R F    K +  T+ ++I G    G  ++A +LF +MK+ N              
Sbjct: 800 IGTARRLFDGTQKKDVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRNGEXES 859

Query: 47  --INPNVVTYNSLIHGFCYANDGNEAEYLFIEMM-DRGLQSDVVTFNVIMDELCKNRKMD 103
             + PN VT+  ++    +A    E +  F  M  D  L+  +  F  ++D LC+   + 
Sbjct: 860 SLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLT 919

Query: 104 EATRLLDLMIQGGVRPDA 121
           EA    + +++  VRP+A
Sbjct: 920 EA---YEFILKMPVRPNA 934


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 12/237 (5%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ G+   P+ V+Y  +ID LCK G VD A+  F QM +E + PN+V ++SL++G C
Sbjct: 54  NKMRQHGL--SPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLC 111

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
             +   + E LF EM++ G+  ++V FN I+  LCK  ++ E  RL+D +   GVRPD  
Sbjct: 112 SIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPD-- 169

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
               +++Y  LIDG C  G +  A +L + +   GL PN  +YN  +H  C   ++D A+
Sbjct: 170 ----VISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAY 225

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL----LRSMDKRNVMPYASIL 235
            LF  M   G+ P  V + T++    +    S+  EL    + S  K  +  Y +IL
Sbjct: 226 SLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTIL 282



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 137/250 (54%), Gaps = 8/250 (3%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  KPN+ +YNT++ G CK G +D A  LF +M    I P VVTYN+++HG       +E
Sbjct: 199 VGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSE 258

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ L++ M++ G +  + T+N I++ LCK+  +DEA ++   +   G+      ++NI+ 
Sbjct: 259 AKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGL------QLNIIT 312

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  +I  L K G+ ++A +L  ++   GL+P+VVTY +    L  +  +++   LF  ME
Sbjct: 313 FTIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAME 372

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             G APN  +   L+   + + + S+    L  +D+RN    AS  S+++ +   +E   
Sbjct: 373 KNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQH 432

Query: 250 N--SIPQFNR 257
           +  S+P+  R
Sbjct: 433 HAKSLPKKYR 442



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 10/218 (4%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           ++ G   +G + +  +L   M    I+PN   +N     +      ++A  +F +M   G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
           L  D V++  ++D LCK  ++D+A    + MI  GV P      NIV +  L+ GLC I 
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTP------NIVVFSSLVYGLCSID 114

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           K +   EL   +   G+ PN+V +N  +  LC + ++ +   L   +E  GV P+ + + 
Sbjct: 115 KWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYN 174

Query: 202 TLMPSFIRK---NETSKVIELLRSMD-KRNVMPYASIL 235
           TL+         +E SK++E + S+  K N   Y ++L
Sbjct: 175 TLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLL 212


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 121/237 (51%), Gaps = 6/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  KPN VTY T+I  LCK   ++ A ELF QM      PNVVTYN+L+ G C      
Sbjct: 181 GMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWG 240

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A +L  +MM R ++ +V+TF  ++D   K  K+ EA  L ++MIQ  V PD F      
Sbjct: 241 DAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVF------ 294

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            YG LI+GLC  G L  AR++   + R G  PN V Y   IH  C  ++++    +F +M
Sbjct: 295 TYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEM 354

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             KGV  N + +T L+  +          E+   M  R   P     ++++D L  N
Sbjct: 355 SQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCN 411



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY ++I+GLC  G +D+A+++F  M+     PN V Y +LIHGFC +    +   +
Sbjct: 291 PDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKI 350

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  +G+ ++ +T+ V++   C   + D A  + + M      PD      I  Y  L
Sbjct: 351 FYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPD------IRTYNVL 404

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLC  GK++ A  + + + +  +  N+VTY I I  +C   +++ A DLF  +  KG+
Sbjct: 405 LDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGM 464

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
            PN + +TT++  F R+    +   L + M +   +P  S+
Sbjct: 465 KPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESV 505



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 6/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y T+I G CK   V+   ++F +M  + +  N +TY  LI G+C     + A+
Sbjct: 324 CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQ 383

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M  R    D+ T+NV++D LC N K+++A  + + M +  +      +INIV Y 
Sbjct: 384 EVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREM------DINIVTYT 437

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+CK+GK+++A +L  SL   G+ PNV+TY   I   C    + +A  LF  M+  
Sbjct: 438 IIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKED 497

Query: 192 GVAPN 196
           G  PN
Sbjct: 498 GFLPN 502



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+ ++++G C    ++ A  LF Q+      PNVVTY +LI   C     N A  
Sbjct: 150 EPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVE 209

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M   G + +VVT+N ++  LC+  +  +A  LL  M++  + P      N++ +  
Sbjct: 210 LFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP------NVITFTA 263

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K+GKL  A+EL   + +  + P+V TY   I+ LC    +D+A  +F  ME  G
Sbjct: 264 LIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNG 323

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             PN VI+TTL+  F +       +++   M ++ V+      ++++ 
Sbjct: 324 CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQ 371



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +  ++  + K    D    LF QM+   I P + T N ++H  C ++    A   
Sbjct: 81  PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF 140

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM  G + D+VTF  +++  C   ++++A  L D ++  G +P      N+V Y  L
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKP------NVVTYTTL 194

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LCK   L +A EL   +   G  PNVVTYN  +  LC   +   A  L  DM  + +
Sbjct: 195 IRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRI 254

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + FT L+ +F++  +  +  EL   M + +V P
Sbjct: 255 EPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYP 291



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 8/228 (3%)

Query: 18  TYNTII-DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +Y  I+ +GL    F D A +LF +M      P+++ +  L+      N  +    LF +
Sbjct: 50  SYRKILRNGLHNLQFND-ALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQ 108

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   G+   + T N++M  +C + +   A+  L  M++ G  PD      +V +  L++G
Sbjct: 109 MQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPD------LVTFTSLLNG 162

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            C   ++++A  L   +   G  PNVVTY   I  LC +  ++ A +LF  M   G  PN
Sbjct: 163 YCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPN 222

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V +  L+              LLR M KR + P     + ++D  VK
Sbjct: 223 VVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVK 270



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY 54
           KPN +TY T+I G C+ G + +A  LF +MK++   PN   Y
Sbjct: 465 KPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score = 42.0 bits (97), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 6/170 (3%)

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           ++  I+     N + ++A  L   M+     P      +I+ +  L+  + K+ +     
Sbjct: 50  SYRKILRNGLHNLQFNDALDLFTRMVHSRPLP------SIIDFTRLLSVIAKMNRYDVVI 103

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
            L + +   G+ P + T NI +H +C   Q  +A      M   G  P+ V FT+L+  +
Sbjct: 104 SLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGY 163

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
              N     I L   +      P     + ++  L KN    +++  FN+
Sbjct: 164 CHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQ 213


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 131/230 (56%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN ++YN II+GLC+EG + +A E+  +M  +   P+ VTYN+L++G+C   + ++A  
Sbjct: 77  QPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALV 136

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  G+   VVT+  +++ +CK R ++ A    D M   G+RP      N   Y  
Sbjct: 137 IHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRP------NERTYTT 190

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  + G L  A  +   +T +G  P+VVTYN  IH  C  E+M++A  +  +M  KG
Sbjct: 191 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 250

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +AP+ V ++T++  F RK E  +  ++ + M ++ V P A   S ++  L
Sbjct: 251 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 300



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 10/233 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY T+IDG  ++G +++A  +  +M +   +P+VVTYN+ IHG C      EA  
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 241

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+++GL  DVV+++ I+   C+  ++D A ++   M++ GV PDA      V Y  
Sbjct: 242 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDA------VTYSS 295

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC++ +L  A +LSQ +   GL P+  TY   I+A C +  ++KA  L  +M  KG
Sbjct: 296 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKG 355

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             P+ V ++ L+    ++  T +   LL  +     +P      +  D L++N
Sbjct: 356 FLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPS----DVTYDTLIEN 404



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I G C  G + K    F +M+     PNVVTYN+LI  +C     +EA  L
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  +G+Q +++++NVI++ LC+   M EA  +L+ M   G  PD       V Y  L
Sbjct: 68  LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE------VTYNTL 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G CK G    A  +   + R G+ P+VVTY   I+++C    +++A + F  M ++G+
Sbjct: 122 LNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL 181

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN   +TTL+  F R+   ++   +L  M +    P
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 218



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 6/194 (3%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           ++PNV TYN LI GFC   +  +    F EM   G   +VVT+N ++D  CK  ++DEA 
Sbjct: 6   VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 65

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
            LL  M   G++P      N+++Y  +I+GLC+ G +K A E+ + +   G  P+ VTYN
Sbjct: 66  GLLKSMSSKGMQP------NLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 119

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             ++  C +    +A  +  +M   GV+P+ V +T L+ S  +    ++ +E    M  R
Sbjct: 120 TLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIR 179

Query: 227 NVMPYASILSIIVD 240
            + P     + ++D
Sbjct: 180 GLRPNERTYTTLID 193



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 13/222 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+++I GLC+   + +A +L  +M D  + P+  TY +LI+ +C   D N+A +L
Sbjct: 288 PDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHL 347

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-----DAFCE---- 124
             EM+ +G   D VT++V+++ L K  +  EA RLL  +I     P     D   E    
Sbjct: 348 HDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSN 407

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           I   +   LI G C  G +  A  + +S+      P    YN+ IH  C    + KA +L
Sbjct: 408 IEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNL 467

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKN---ETSKVI-ELLRS 222
           + +M   G  P+ V   TL+ +  ++    E S+VI + LRS
Sbjct: 468 YKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRS 509


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 140/250 (56%), Gaps = 10/250 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+  +Y+ +I+G CK   +D+AK L  QM ++ + PN VTYN+L+ G C+A+   
Sbjct: 254 GKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLL 313

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA+ LF +M   G+  ++ T+++++D LCK+  ++EA +LL  M +  + PD      IV
Sbjct: 314 EAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPD------IV 367

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI G+   GKL+ A+EL   L   G+ P+V TYNI I  L  +   D+A+ LF  M
Sbjct: 368 LYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKM 427

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
           E  G  P+   +  ++  F++  + S  I+L+  M  R     +S   +++DL   +EI 
Sbjct: 428 EDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLDLESHDEI- 486

Query: 249 LNSIPQFNRQ 258
              I +F R+
Sbjct: 487 ---ISRFMRE 493



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 133/244 (54%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVT+  ++D LCK+G V +A+ +F  M ++ + PN+ TYN+L++G+C   + N+A  +
Sbjct: 189 PNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKV 248

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G    V +++++++  CK+R++DEA  LL  M +  + P      N V Y  L
Sbjct: 249 FEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIP------NTVTYNTL 302

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC    L  A+EL + +  +G++PN+ TY+I +  LC    +++A  L   M+ + +
Sbjct: 303 MQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKL 362

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V++  L+       +     EL   +    + P     +I++  L+K  +S  +  
Sbjct: 363 EPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYK 422

Query: 254 QFNR 257
            F +
Sbjct: 423 LFRK 426



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 132/236 (55%), Gaps = 6/236 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           ++ F +  +P++VT+ T+I+GLC EG + +A ELF +M   +  PN VT+  L+   C  
Sbjct: 145 SKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKK 204

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA  +F  M ++G++ ++ T+N +M+  C   +M++A+++ ++M+  G  P     
Sbjct: 205 GMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAP----- 259

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++ +Y  LI+G CK  ++  A+ L   ++   L+PN VTYN  +  LC+   + +A +L
Sbjct: 260 -SVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQEL 318

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           F  M   G+ PN   ++ L+    +     + ++LL SM +R + P   + +I++ 
Sbjct: 319 FKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQ 374



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FGV    N  T N +I+ LC+   +  A  +  +M    I P+ VT+ +LI+G C     
Sbjct: 115 FGVA--HNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRI 172

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA  LF EM  R    + VTF +++D LCK   + EA  + + M + GV P      NI
Sbjct: 173 KEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEP------NI 226

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  L++G C   ++ +A ++ + +   G  P+V +Y+I I+  C   ++D+A  L   
Sbjct: 227 YTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQ 286

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           M  K + PN V + TLM      +   +  EL + M    ++P     SI++D L K+
Sbjct: 287 MSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKH 344



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 6/230 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           MA+  R   +  +P+ V     +  + K+        L  QM    +  N  T N LI+ 
Sbjct: 71  MASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINS 130

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C  +  + A  +  +M   G+Q D VTF  +++ LC   ++ EA  L + M      P 
Sbjct: 131 LCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMP- 189

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N V +  L+D LCK G +  AR + +++T  G+ PN+ TYN  ++  C   +M+ 
Sbjct: 190 -----NTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMND 244

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  +F  M  KG AP+   ++ L+  + +     +   LL  M ++ ++P
Sbjct: 245 ASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIP 294



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +D+A      MI    RP +F E+     G  +  + K  +      L   +   G+  N
Sbjct: 67  IDDAMASFYRMIHMNPRP-SFVEL-----GKFLGSIAKKKQYSTVVSLCNQMDLFGVAHN 120

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
             T NI I++LC    +  A  +   M   G+ P+ V FTTL+     +    + +EL  
Sbjct: 121 DYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFN 180

Query: 222 SMDKRNVMPYASILSIIVDLLVK 244
            M  R+ MP     +I+VD+L K
Sbjct: 181 EMAGRDAMPNTVTFTILVDVLCK 203


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 132/236 (55%), Gaps = 6/236 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G V KPN V YN IID  CK+    KA++L+L++ D  I+P+++TY SLI GFC      
Sbjct: 217 GQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWG 276

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           E + L  EM+++ +  +V TFNV++D  C+  KM EA  + +LM++ G +PD      IV
Sbjct: 277 EVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPD------IV 330

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  LI G C  G +  AR+L  ++   G++P+V +Y I I   C  +++D+A  LF +M
Sbjct: 331 TFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEM 390

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             K +  + V++++L+    +    S   EL  +++     P     +I++D   K
Sbjct: 391 RCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCK 446



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 133/261 (50%), Gaps = 29/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY ++I G C+ G   + K+L  +M ++NINPNV T+N LI  FC      EA+ +
Sbjct: 257 PDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGM 316

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
           F  M+ RG Q D+VTFN ++   C +  + EA +L D + + G+ PD          +C+
Sbjct: 317 FNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCK 376

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                               ++IV Y  LIDGLCK G++  A EL  ++   G  PNV+T
Sbjct: 377 CKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVIT 436

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YNI I A C  + +D   +LF  M  KG+ P  + +  L+  + +     + + LL  M 
Sbjct: 437 YNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQ 496

Query: 225 KRNVMPYASILSIIVDLLVKN 245
            +N+ P +   + + D L K+
Sbjct: 497 SKNLAPDSITYNSLFDGLCKS 517



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+NT+I G C  G V +A++LF  + +  I P+V +Y  LI G+C     +EA  
Sbjct: 326 QPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVS 385

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  + +  D+V ++ ++D LCK+ ++  A  L   +   G  P      N++ Y  
Sbjct: 386 LFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPP------NVITYNI 439

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID  CKI  +    EL + +   GL P V+TYNI I+  C  +++ +A +L   M+ K 
Sbjct: 440 LIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKN 499

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +AP+ + + +L     +    S   EL + M
Sbjct: 500 LAPDSITYNSLFDGLCKSGRISDAWELFKVM 530



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +NTII  + K      A  L  QM  + + P++ T +  I+ +C+  +   A  +
Sbjct: 82  PSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSV 141

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ RG Q + +T   +M  LC N ++ +A    D +   G+  D  C      YG L
Sbjct: 142 LGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVC------YGTL 195

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCKIG+  +A +L Q +    + PN+V YN+ I + C DE   KA DL+L +   G+
Sbjct: 196 INGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGI 255

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ + +T+L+  F R  +  +V +L+  M  +N+ P     ++++D   +    + +  
Sbjct: 256 DPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQG 315

Query: 254 QFN 256
            FN
Sbjct: 316 MFN 318



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 6/162 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V Y+++IDGLCK G +  A ELF  + ++   PNV+TYN LI  FC   D +    LF
Sbjct: 398 DIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELF 457

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  +GL   V+T+N++++  CK++++ EA  LL +M    + PD+      + Y  L 
Sbjct: 458 KLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDS------ITYNSLF 511

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           DGLCK G++ +A EL + +   G   +V TYN+ + A C  +
Sbjct: 512 DGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQ 553



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +T  T++ GLC  G V KA +    +  + +  + V Y +LI+G C      +A  
Sbjct: 151 QPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQ 210

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  + ++ ++V +N+I+D  CK+    +A  L   ++  G+ PD      I+ Y  
Sbjct: 211 LLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPD------ILTYTS 264

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C+ G+    ++L   +    + PNV T+N+ I A C   +M +A  +F  M  +G
Sbjct: 265 LIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRG 324

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             P+ V F TL+          +  +L  ++ +R ++P     +I++
Sbjct: 325 QQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILI 371



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 6/126 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN +ID  CK   +D   ELF  M  + + P V+TYN LI+G+C +    EA  L
Sbjct: 432 PNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNL 491

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  + L  D +T+N + D LCK+ ++ +A  L  +M  GG        +++  Y  L
Sbjct: 492 LSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGP------PVDVATYNVL 545

Query: 134 IDGLCK 139
           +D  CK
Sbjct: 546 LDAFCK 551



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           P+++TYN++ DGLCK G +  A ELF  M       +V TYN L+  FC A D
Sbjct: 502 PDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQD 554


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 138/264 (52%), Gaps = 29/264 (10%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY+TIID LCK+  V++A ++F  MK + I+PN+ TYNSLI G C  +   EA 
Sbjct: 41  CQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREAS 100

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            +  EMM   +  ++VTF+++++  CK   + EA  +L  M + GV P+           
Sbjct: 101 AMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGY 160

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C+ ++ +Y  LI+G CK  ++  A++L   +   GL P++
Sbjct: 161 SLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDI 220

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V+YN  I  LC   ++ +AHDLF +M   G  P+   ++ L+  F ++   +K   L R+
Sbjct: 221 VSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRA 280

Query: 223 MDKRNVMPYASILSIIVDLLVKNE 246
           M    + P   + +I++D + K+ 
Sbjct: 281 MQSTYLKPNMVMYNILIDAMCKSR 304



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 126/217 (58%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT++ +I+  CKEG V +A+ +   M +  + PNVVTY+SL++G+    +  EA  L
Sbjct: 113 PNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKL 172

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G + DV ++N++++  CK +++ EA +L + MI  G+ PD      IV+Y  L
Sbjct: 173 FDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPD------IVSYNTL 226

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLC++G+L+ A +L +++   G +P++ TY+I +   C    + KA  LF  M+   +
Sbjct: 227 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 286

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V++  L+ +  +     +  +L   +  + + P
Sbjct: 287 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQP 323



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 111/190 (58%), Gaps = 8/190 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV  +PN VTY+++++G   +  V +A++LF  M  +   P+V +YN LI+G+C A  
Sbjct: 143 EMGV--EPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKR 200

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA+ LF EM+ +GL  D+V++N ++D LC+  ++ EA  L   M+  G  PD      
Sbjct: 201 IGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPD------ 254

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  L+DG CK G L  A  L +++    L PN+V YNI I A+C    + +A  LF 
Sbjct: 255 LCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFS 314

Query: 187 DMEVKGVAPN 196
           ++ V+G+ PN
Sbjct: 315 ELFVQGLQPN 324



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 6/156 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  +YN +I+G CK   + +AK+LF +M  + + P++V+YN+LI G C      EA 
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 240

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M+  G   D+ T+++++D  CK   + +A RL   M    ++P      N+V Y 
Sbjct: 241 DLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKP------NMVMYN 294

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
            LID +CK   LK AR+L   L   GL PN+  + +
Sbjct: 295 ILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHWKL 330



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 10/163 (6%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+ RG Q DV T+  I++ LCK  +   A  L   M + G +PD      +V Y  +ID 
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPD------VVTYSTIIDS 54

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK  ++  A ++   +   G+ PN+ TYN  I  LCN  +  +A  +  +M    + PN
Sbjct: 55  LCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPN 114

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            V F+ L+  F ++    +   +L++M +  V P    Y+S++
Sbjct: 115 IVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLM 157



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 6/133 (4%)

Query: 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           M+  G +PD      +  Y  +I+GLCKIG+   A  L + +  AG  P+VVTY+  I +
Sbjct: 1   MVARGYQPD------VHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDS 54

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
           LC D ++++A D+F  M+ KG++PN   + +L+      +   +   +L  M   N+MP 
Sbjct: 55  LCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPN 114

Query: 232 ASILSIIVDLLVK 244
               S+++++  K
Sbjct: 115 IVTFSLLINIFCK 127


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 150/260 (57%), Gaps = 20/260 (7%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  KPN VT+N++++G+CK G ++ A+++F +M  E + P+ V+YN+L+ G+C A 
Sbjct: 252 REGGL--KPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAG 309

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EA  +F EM  +G+  DVVTF  ++  +CK   ++ A  L+  M + G+      ++
Sbjct: 310 CSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGL------QM 363

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N V +  LIDG CK G L +A    + + +  + P+VV YN  I+  C   +MD+A +L 
Sbjct: 364 NEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELL 423

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII--- 238
            +ME KG+ P+ V ++T++ ++ +  +T    EL + M ++ V+P    Y+S++ ++   
Sbjct: 424 HEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGE 483

Query: 239 -----VDLLVKNEISLNSIP 253
                  +L KN I L   P
Sbjct: 484 KRLSDAHVLFKNMIKLGLQP 503



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN ++  LC  G   +A  +   M+     PNVVTYN+L+  F  A + + AE L
Sbjct: 188 PNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERL 247

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M + GL+ ++VTFN +++ +CK  KM++A ++ D M++ G+ PD       V+Y  L
Sbjct: 248 VGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDG------VSYNTL 301

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK G    A  +   +T+ G+MP+VVT+   IH +C    +++A  L   M  +G+
Sbjct: 302 VGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGL 361

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             N V FT L+  F +K      +  +R M +  + P
Sbjct: 362 QMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKP 398



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 41/273 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT++ G CK G   +A  +F +M  + I P+VVT+ SLIH  C A +   A  L
Sbjct: 293 PDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTL 352

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M +RGLQ + VTF  ++D  CK   +D+A   +  M Q  ++P   C      Y  L
Sbjct: 353 VRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVC------YNAL 406

Query: 134 IDGLCKIGKLKNAREL-----------------------------------SQSLTRAGL 158
           I+G C +G++  AREL                                   +Q +   G+
Sbjct: 407 INGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGV 466

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +P+ +TY+  I  LC ++++  AH LF +M   G+ P+   +T+L+    ++      + 
Sbjct: 467 LPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALS 526

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           L   M K  V+P     S++++ L K+  ++ +
Sbjct: 527 LHDKMVKAGVLPDVVTYSVLINGLSKSARAMEA 559



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 122/217 (56%), Gaps = 7/217 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN +I+G C  G +D+A+EL  +M+ + + P+VVTY+++I  +C   D + A  
Sbjct: 397 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 456

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+++G+  D +T++ ++  LC  +++ +A  L   MI+ G++PD F       Y  
Sbjct: 457 LNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEF------TYTS 510

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G +++A  L   + +AG++P+VVTY++ I+ L    +  +A  L   +  + 
Sbjct: 511 LIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHED 570

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P    +  LM    RK E   V+ LL+    + +M
Sbjct: 571 PIPANTKYDALM-HCCRKAELKSVLALLKGFCMKGLM 606



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + YN ++  L  +  +  A+  F  M  + + PNV TYN L+   C      EA  +
Sbjct: 154 PSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSI 212

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G   +VVT+N ++    +  ++D A RL+ +M +GG++P      N+V +  +
Sbjct: 213 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKP------NLVTFNSM 266

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+CK GK+++AR++   + R GL P+ V+YN  +   C      +A  +F +M  KG+
Sbjct: 267 VNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 326

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V FT+L+    +     + + L+R M +R +       + ++D   K
Sbjct: 327 MPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCK 377



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 102/261 (39%), Gaps = 59/261 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY+TII   CK      A EL  QM ++ + P+ +TY+SLI   C     ++A  
Sbjct: 432 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHV 491

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M+  GLQ D  T+  ++D  CK   ++ A  L D M++ GV PD      +V Y  
Sbjct: 492 LFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPD------VVTYSV 545

Query: 133 LIDGL----------------------------------CKIGKLKNARELSQSLTRAGL 158
           LI+GL                                  C+  +LK+   L +     GL
Sbjct: 546 LINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGL 605

Query: 159 MPNV----------------VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           M                     Y++ IH  C    + KA      M   G APN     +
Sbjct: 606 MNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTIS 665

Query: 203 LMPSFIRKN---ETSKVIELL 220
           L+          E  +VI+ L
Sbjct: 666 LIRGLFENGMVVEADQVIQQL 686



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 21/198 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH-------------- 59
           P+ VTY+ +I+GL K     +A++L  ++  E+  P    Y++L+H              
Sbjct: 538 PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALL 597

Query: 60  -GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
            GFC     NEA+ ++  M+DR    D   ++V++   C+   + +A      M+QGG  
Sbjct: 598 KGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFA 657

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           P++   I+      LI GL + G +  A ++ Q L     + +       I    N+  +
Sbjct: 658 PNSTSTIS------LIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNV 711

Query: 179 DKAHDLFLDMEVKGVAPN 196
           D   D+   M   G+ P+
Sbjct: 712 DAVLDVLHGMAKDGLLPS 729



 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G +P+V+ YN  + AL +D  +  A   F  M   GVAPN   +  L+ +   +    + 
Sbjct: 151 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 209

Query: 217 IELLRSMDKRNVMP 230
           + +LR M      P
Sbjct: 210 LSILRDMRGAGCGP 223


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 123/216 (56%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I+G CK   VD+A  LF +M  +N+ P+ VTY+SL+ G C +   +    L
Sbjct: 585 PDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDL 644

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG  +DV+T+N ++D LCKN  +D+A  L + M   G+RP+ F       +  L
Sbjct: 645 IDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTF------TFTIL 698

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+LK+A+E+ Q L   G   +V  YN+ I+  C    +++A  +   ME  G 
Sbjct: 699 LDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGC 758

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN V F  ++ +  +K+E  K  +LLR M  R ++
Sbjct: 759 IPNAVTFDIIINALFKKDENDKAEKLLRQMIARGLL 794



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 141/255 (55%), Gaps = 14/255 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + KPN   Y+TIID LCK   V +A  LF +M  + I+ +VVTY++LI+GFC      
Sbjct: 440 GRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLK 499

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM+ + +  DV T+ +++D L K  K+ EA  +L +M++  V+PD F      
Sbjct: 500 EAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVF------ 553

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L++G   + ++K A+ +  +++  G+ P+V TY I I+  C  + +D+A +LF +M
Sbjct: 554 TYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEM 613

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVK 244
             K + P+ V +++L+    +    S V +L+  M  R    +V+ Y S    ++D L K
Sbjct: 614 HQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNS----LIDGLCK 669

Query: 245 NEISLNSIPQFNRQK 259
           N     +I  FN+ K
Sbjct: 670 NGHLDKAIALFNKMK 684



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 132/232 (56%), Gaps = 7/232 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + KPN   YNTIID LCK   V +A  LF +M  + I+ NVVTY++LI+GFC      
Sbjct: 126 GRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLK 185

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L   M+ + +  +V T+N+++D LCK  K+ EA  +L +M++  V+       N++
Sbjct: 186 EALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKS------NVI 239

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG   + ++K A+ +  +++  G+ P+V +YNI I+  C  +++DKA +LF +M
Sbjct: 240 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +    P  + F  ++ SF +    S  + L   ++ + + P    L+I+++
Sbjct: 300 ILSRFPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILIN 350



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYNT+++G      V KA+ +F  M    + P+V TY  LI+GFC +   +EA  
Sbjct: 549 KPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALN 608

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  + +  D VT++ ++D LCK+ ++     L+D M   G   D      ++ Y  
Sbjct: 609 LFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPAD------VITYNS 662

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK G L  A  L   +   G+ PN  T+ I +  LC   ++  A ++F D+  KG
Sbjct: 663 LIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 722

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              +  I+  ++    ++    + + +L  M++   +P A    II++ L K +
Sbjct: 723 YHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKD 776



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVT NT+I GLC +G V +A     ++  +    N V+Y +LI+G C   D   A   
Sbjct: 61  PDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKF 120

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++  R  + +V  +N I+D LCK + + EA  L   M   G+        N+V Y  L
Sbjct: 121 LRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISA------NVVTYSTL 174

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C +GKLK A  L   +    + PNV TYNI + ALC + ++ +A  +   M    V
Sbjct: 175 IYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACV 234

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             N + ++TLM  +    E  K   +  +M    V P
Sbjct: 235 KSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTP 271



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 40/268 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN ++D LCKEG V +AK +   M    +  NV+TY++L+ G+    +  +A+++
Sbjct: 201 PNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHV 260

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG------------------ 115
           F  M   G+  DV ++N++++  CK +++D+A  L   MI                    
Sbjct: 261 FNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKM 320

Query: 116 ----------------GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
                           G++PD F  +NI     LI+  C +G++     +   + + G  
Sbjct: 321 KHYSTAVSLSHRLELKGIQPDLF-TLNI-----LINCFCHMGQITFGFSVLAKILKRGYP 374

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+ VT N  I  LC   Q+ KA      +  +G   N V + TL+    +  +T   I+L
Sbjct: 375 PSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKL 434

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKNEI 247
           LR +D R   P   + S I+D L K ++
Sbjct: 435 LRKIDGRLTKPNVEMYSTIIDALCKYQL 462



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N I+D   K      A  L  +++ + I P++ T N LI+ FC+         +
Sbjct: 305 PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSV 364

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++ RG     VT N ++  LC   ++ +A    D ++  G       ++N V+Y  L
Sbjct: 365 LAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGF------QLNQVSYATL 418

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G+CKIG  + A +L + +      PNV  Y+  I ALC  + + +A+ LF +M VKG+
Sbjct: 419 INGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGI 478

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + + V ++TL+  F    +  + I LL  M  + + P     +I+VD L K
Sbjct: 479 SADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGK 529



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 6/172 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++ RG   D VT N ++  LC   ++ EA    D ++  G       ++N V+Y  
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGF------QLNQVSYAT 103

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G+C+IG  + A +  + +      PNV  YN  I ALC  + + +A+ LF +M VKG
Sbjct: 104 LINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKG 163

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++ N V ++TL+  F    +  + + LL  M  + + P     +I+VD L K
Sbjct: 164 ISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCK 215



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 61/105 (58%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNT T+  ++DGLCK G +  A+E+F  +  +  + +V  YN +I+G C      EA  
Sbjct: 689 RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALT 748

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           +  +M + G   + VTF++I++ L K  + D+A +LL  MI  G+
Sbjct: 749 MLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 127/219 (57%), Gaps = 6/219 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+ +YN +I+G CK   VD+A  LF +M    I P+ VTYNSLI G C A     A  L
Sbjct: 331 PNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWEL 390

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +  + +D+VT+N ++D  CKN+ +D+A  L+  + + G++P      N+  Y  L
Sbjct: 391 VDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQP------NMCTYNIL 444

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+LKNA+++ Q L   G   N  TYNI I+ LC +   D+A  L   ME  G+
Sbjct: 445 IDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGI 504

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
            P+ V + T++ +   K+E  K  +LLR M  + V+ YA
Sbjct: 505 IPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVVVYA 543



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 135/240 (56%), Gaps = 10/240 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G +   N V Y+TIIDGLCK+  V  A  L+ +M  + I P VVT++SLI+GFC      
Sbjct: 186 GKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFK 245

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF EM+ + +  D  TFN+++D LCK  K+ EA  ++ +M++ GV P       +V
Sbjct: 246 DAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEP------TVV 299

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ +   ++R  + PN  +YNI I+  C  + +D+A  LF +M
Sbjct: 300 TYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEM 359

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI--IVDLLVKNE 246
             +G+AP+ V + +L+    +        EL+  M   N +P A I++   ++D+  KN+
Sbjct: 360 CCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHN-NCIP-ADIVTYNSLIDVFCKNQ 417



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 21/241 (8%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           NR   +   P+ V +N I+  L K +        L  QM+ + + P++ T + LI+ +C+
Sbjct: 55  NRMRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCH 114

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
                 A  +F +++  GL              C N K++EA    D ++  G       
Sbjct: 115 LGQMTFAFSVFAKILKMGL--------------CLNGKVNEALLFHDHVLALGF------ 154

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            +N V YG LI+GLCK+G+ + A ++ + +    +  NVV Y+  I  LC D+ +  A+ 
Sbjct: 155 HLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYG 214

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           L+ +M VK + P  V F++L+  F    +      L   M  +N+ P A   +I+VD L 
Sbjct: 215 LYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALC 274

Query: 244 K 244
           K
Sbjct: 275 K 275



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  +PN  TYN +IDGLCK G +  A+++F  +  +  N N  TYN +I+G C   
Sbjct: 430 KEHGI--QPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEG 487

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
             +EAE L  +M D G+  D VT+  I+  L    + ++A +LL  M+  GV   AF
Sbjct: 488 LFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVVVYAF 544


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 131/230 (56%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN ++YN II+GLC+EG + +A E+  +M  +   P+ VTYN+L++G+C   + ++A  
Sbjct: 281 QPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALV 340

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  G+   VVT+  +++ +CK R ++ A    D M   G+RP      N   Y  
Sbjct: 341 IHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRP------NERTYTT 394

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  + G L  A  +   +T +G  P+VVTYN  IH  C  E+M++A  +  +M  KG
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 454

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +AP+ V ++T++  F RK E  +  ++ + M ++ V P A   S ++  L
Sbjct: 455 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 504



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 10/233 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY T+IDG  ++G +++A  +  +M +   +P+VVTYN+ IHG C      EA  
Sbjct: 386 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 445

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+++GL  DVV+++ I+   C+  ++D A ++   M++ GV PDA      V Y  
Sbjct: 446 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDA------VTYSS 499

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC++ +L  A +LSQ +   GL P+  TY   I+A C +  ++KA  L  +M  KG
Sbjct: 500 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKG 559

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             P+ V ++ L+    ++  T +   LL  +     +P      +  D L++N
Sbjct: 560 FLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPS----DVTYDTLIEN 608



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I G C  G + K    F +M+     PNVVTYN+LI  +C     +EA  L
Sbjct: 212 PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 271

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  +G+Q +++++NVI++ LC+   M EA  +L+ M   G  PD       V Y  L
Sbjct: 272 LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE------VTYNTL 325

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G CK G    A  +   + R G+ P+VVTY   I+++C    +++A + F  M ++G+
Sbjct: 326 LNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL 385

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN   +TTL+  F R+   ++   +L  M +    P
Sbjct: 386 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 422



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 14  PNTVTYNTIIDGLCKE-GFVD-KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           P  ++YN+++D + +  G V   A+E++ +M    ++PNV TYN LI GFC   +  +  
Sbjct: 175 PGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGL 234

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F EM   G   +VVT+N ++D  CK  ++DEA  LL  M   G++P      N+++Y 
Sbjct: 235 GCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQP------NLISYN 288

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GLC+ G +K A E+ + +   G  P+ VTYN  ++  C +    +A  +  +M   
Sbjct: 289 VIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN 348

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           GV+P+ V +T L+ S  +    ++ +E    M  R + P     + ++D
Sbjct: 349 GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLID 397



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 13/222 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+++I GLC+   + +A +L  +M D  + P+  TY +LI+ +C   D N+A +L
Sbjct: 492 PDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHL 551

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-----DAFCE---- 124
             EM+ +G   D VT++V+++ L K  +  EA RLL  +I     P     D   E    
Sbjct: 552 HDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSN 611

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           I   +   LI G C  G +  A  + +S+      P    YN+ IH  C    + KA +L
Sbjct: 612 IEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNL 671

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKN---ETSKVI-ELLRS 222
           + +M   G  P+ V   TL+ +  ++    E S+VI + LRS
Sbjct: 672 YKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRS 713



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 113/236 (47%), Gaps = 8/236 (3%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE- 69
           V   ++  ++ ++        +D+A       K     P V++YNS++     +    + 
Sbjct: 137 VYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKL 196

Query: 70  -AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            AE ++ EM+   +  +V T+N+++   C   ++ +       M + G  P      N+V
Sbjct: 197 SAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLP------NVV 250

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LID  CK+G++  A  L +S++  G+ PN+++YN+ I+ LC +  M +A ++  +M
Sbjct: 251 TYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM 310

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             KG  P+ V + TL+  + ++    + + +   M +  V P     + +++ + K
Sbjct: 311 GYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 366


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 138/264 (52%), Gaps = 29/264 (10%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY+TIID LCK+  V++A ++F  MK + I+PN+ TYNSLI G C  +   EA 
Sbjct: 258 CQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREAS 317

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            +  EMM   +  ++VTF+++++  CK   + EA  +L  M + GV P+           
Sbjct: 318 AMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGY 377

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C+ ++ +Y  LI+G CK  ++  A++L   +   GL P++
Sbjct: 378 SLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDI 437

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V+YN  I  LC   ++ +AHDLF +M   G  P+   ++ L+  F ++   +K   L R+
Sbjct: 438 VSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRA 497

Query: 223 MDKRNVMPYASILSIIVDLLVKNE 246
           M    + P   + +I++D + K+ 
Sbjct: 498 MQSTYLKPNMVMYNILIDAMCKSR 521



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 136/240 (56%), Gaps = 8/240 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV  +PN VTY+++++G   +  V +A++LF  M  +   P+V +YN LI+G+C A  
Sbjct: 360 EMGV--EPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKR 417

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA+ LF EM+ +GL  D+V++N ++D LC+  ++ EA  L   M+  G  PD      
Sbjct: 418 IGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPD------ 471

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  L+DG CK G L  A  L +++    L PN+V YNI I A+C    + +A  LF 
Sbjct: 472 LCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFS 531

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++ V+G+ PN  I+TT++    ++    + +E  R+M++    P     ++I+   ++++
Sbjct: 532 ELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHK 591



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 133/231 (57%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT++ +I+  CKEG V +A+ +   M +  + PNVVTY+SL++G+    +  EA  L
Sbjct: 330 PNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKL 389

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G + DV ++N++++  CK +++ EA +L + MI  G+ PD      IV+Y  L
Sbjct: 390 FDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPD------IVSYNTL 443

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLC++G+L+ A +L +++   G +P++ TY+I +   C    + KA  LF  M+   +
Sbjct: 444 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 503

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V++  L+ +  +     +  +L   +  + + P   I + I++ L K
Sbjct: 504 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCK 554



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 119/215 (55%), Gaps = 6/215 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  +YN +I+G CK   + +AK+LF +M  + + P++V+YN+LI G C      EA 
Sbjct: 398 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 457

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M+  G   D+ T+++++D  CK   + +A RL   M    ++P      N+V Y 
Sbjct: 458 DLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKP------NMVMYN 511

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID +CK   LK AR+L   L   GL PNV  Y   I+ LC +  +D+A + F +ME  
Sbjct: 512 ILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEED 571

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           G  PN   +  ++  F++  + S+ ++L+  M ++
Sbjct: 572 GCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREK 606



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 114/214 (53%), Gaps = 6/214 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VT+NT+I+GLCK G   +A ELF  M      P+V TY ++I+G C   +   A  LF +
Sbjct: 193 VTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRK 252

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M + G Q DVVT++ I+D LCK+R+++EA  +   M   G+ P      NI  Y  LI G
Sbjct: 253 MGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISP------NIFTYNSLIQG 306

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LC   + + A  +   +    +MPN+VT+++ I+  C +  + +A  +   M   GV PN
Sbjct: 307 LCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPN 366

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V +++LM  +  + E  +  +L   M  +   P
Sbjct: 367 VVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKP 400



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 7/233 (3%)

Query: 13  KPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           +P  + +N ++  + K   + D    L  QM+   ++P+  T + LI+ F      +   
Sbjct: 118 RPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGF 177

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +++  GLQ  +VTFN +++ LCK  K  +A  L D M+  G +PD      +  Y 
Sbjct: 178 SVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPD------VHTYT 231

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GLCKIG+   A  L + +  AG  P+VVTY+  I +LC D ++++A D+F  M+ K
Sbjct: 232 TIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAK 291

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G++PN   + +L+      +   +   +L  M   N+MP     S+++++  K
Sbjct: 292 GISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK 344



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 6/179 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT+IDGLC+ G + +A +LF  M      P++ TY+ L+ GFC      +A  L
Sbjct: 435 PDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRL 494

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M    L+ ++V +N+++D +CK+R + EA +L   +   G++P      N+  Y  +
Sbjct: 495 FRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQP------NVQIYTTI 548

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           I+GLCK G L  A E  +++   G  PN  +YN+ I      +   +A  L  +M  KG
Sbjct: 549 INGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKG 607



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 6/151 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ ++DG CK+G++ KA  LF  M+   + PN+V YN LI   C + +  EA  L
Sbjct: 470 PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKL 529

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E+  +GLQ +V  +  I++ LCK   +DEA      M + G  P+ F      +Y  +
Sbjct: 530 FSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEF------SYNVI 583

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           I G  +      A +L   +   G + +V T
Sbjct: 584 IRGFLQHKDESRAVQLIGEMREKGFVADVAT 614



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 46/76 (60%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y TII+GLCKEG +D+A E F  M+++   PN  +YN +I GF    D + A  
Sbjct: 539 QPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQ 598

Query: 73  LFIEMMDRGLQSDVVT 88
           L  EM ++G  +DV T
Sbjct: 599 LIGEMREKGFVADVAT 614



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V YN +ID +CK   + +A++LF ++  + + PNV  Y ++I+G C     +EA  
Sbjct: 504 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALE 563

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            F  M + G   +  ++NVI+    +++    A +L+  M + G   D
Sbjct: 564 AFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVAD 611



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 7/180 (3%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEIN 126
           ++A   F  M+ R  +  ++ FN ++  + K R   +A   L   ++  G+ PD +    
Sbjct: 103 DDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTY---- 158

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
                 LI+   ++ ++     +   + + GL   +VT+N  I+ LC   +  +A +LF 
Sbjct: 159 --TLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFD 216

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           DM  +G  P+   +TT++    +  ET     L R M +    P     S I+D L K+ 
Sbjct: 217 DMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDR 276


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V Y  +I GLC E  + +A+ +F  M++  + PN+ TYN+++ G+C      +A  L
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALEL 285

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+  GL  +VVTF +++D LCK  +M  A + L  M   GV P      NI  Y CL
Sbjct: 286 YQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP------NIFVYNCL 339

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L  A  L   + +  ++P+V TY+I I  LC  ++M++A  L  +M+ KG 
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN V + TL+  + ++    K IE+   M ++ + P     S ++D
Sbjct: 400 LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+  +IDGLCK   +  A++  + M    + PN+  YN LI G+C A + +EA  L
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+    +  DV T+++++  LC   +M+EA  LL  M + G  P+A      V Y  L
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNA------VTYNTL 409

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G ++ A E+   +T  G+ PN++T++  I   C   +M+ A  L+ +M +KG+
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+ V +T L+    +   T +   L + M +  + P    LS ++D L K+
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKD 521



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P     N ++DGL K+G  D   +++  M     +PNVVTY +LI G C   D  +A  L
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+++ +   VV + +++  LC   ++ EA  +   M   G+ P      N+  Y  +
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLP------NLYTYNTM 269

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CKI  +K A EL Q +   GL+PNVVT+ I I  LC  ++M  A    +DM   GV
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PN  ++  L+  + +    S+ + L   ++K  ++P     SI++
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 8/214 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            FGVV  PN   YN +IDG CK G + +A  L  +++   I P+V TY+ LI G C  + 
Sbjct: 326 SFGVV--PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDR 383

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA+ L  EM  +G   + VT+N ++D  CK   M++A  +   M + G+ P      N
Sbjct: 384 MEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEP------N 437

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           I+ +  LIDG CK GK++ A  L   +   GL+P+VV Y   I     D    +A  L  
Sbjct: 438 IITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +M+  G+ PN    + L+    +    S  I+L 
Sbjct: 498 EMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 6/173 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I GLC    +++A  L  +MK +   PN VTYN+LI G+C   +  +A  +
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M ++G++ +++TF+ ++D  CK  KM+ A  L   M+  G+ PD      +VAY  L
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD------VVAYTAL 479

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           IDG  K G  K A  L + +  AGL PNV T +  I  LC D ++  A  LFL
Sbjct: 480 IDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 11/206 (5%)

Query: 41  QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           +++     PNV  +  LI  F       EA +++ +M    +   +   N+++D L K  
Sbjct: 118 RLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKKG 172

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           + D   ++   M+  G  P      N+V YG LIDG C+ G    A  L   +    + P
Sbjct: 173 RFDTMWKVYGDMVARGASP------NVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFP 226

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            VV Y I I  LC + ++ +A  +F  M   G+ PN   + T+M  + +     K +EL 
Sbjct: 227 TVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELY 286

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNE 246
           + M    ++P      I++D L K +
Sbjct: 287 QEMLGDGLLPNVVTFGILIDGLCKTD 312



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 110/241 (45%), Gaps = 15/241 (6%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +A+ +  F  +   N +++ ++I         +KA +LF QM+ +++ P++VT    +  
Sbjct: 682 VADAHNMFDEIPSKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSA 741

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
                  +  E++   +  RGL +D+   N +++   K  ++  A R         V P+
Sbjct: 742 CADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRF------SLVLPN 795

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
               + ++   C   GL + GK ++ R + +  +   L P +  +   +  LC    + +
Sbjct: 796 DVTFMGVLM-ACSHAGLVEEGK-QHFRSMKEDYS---LRPRISHFGCMVDLLCRAGLLTE 850

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A++  L M V+   PN V++ TL+ +   +    K + L+R+  K+   P  S + + +D
Sbjct: 851 AYEFILKMPVR---PNAVVWRTLLGACSLQGMWDKKM-LVRNQIKQRRDPGCSSIEVGID 906

Query: 241 L 241
           +
Sbjct: 907 I 907


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 150/260 (57%), Gaps = 20/260 (7%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  KPN VT+N++++G+CK G ++ A+++F +M  E + P+ V+YN+L+ G+C   
Sbjct: 219 REGGL--KPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVG 276

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EA  +F EM  +G+  DVVTF  ++  +CK   ++ A  L+  M + G+      ++
Sbjct: 277 CSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGL------QM 330

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N + +  LIDG CK G L +A    + + +  + P+VV YN  I+  C   +MD+A +L 
Sbjct: 331 NEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELV 390

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVD- 240
            +ME KGV P+ V ++T++ ++ +  +T    +L + M +  V+P    Y+S++ ++ + 
Sbjct: 391 REMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEE 450

Query: 241 -------LLVKNEISLNSIP 253
                  +L KN ISL   P
Sbjct: 451 KRLGDAHVLFKNMISLGLQP 470



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN ++  LC  G   +A  +   M+    +PN VTYN+L+  FC A + + AE L
Sbjct: 155 PNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERL 214

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M + GL+ ++VTFN +++ +CK  +M++A ++ D M++ G+ PD       V+Y  L
Sbjct: 215 VDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDG------VSYNTL 268

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK+G    A  +   +TR G+MP+VVT+   IH +C    +++A  L  +M  +G+
Sbjct: 269 VGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGL 328

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             N + FT L+  F +K      +  +R M +  + P
Sbjct: 329 QMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQP 365



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 41/267 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT++ G CK G   +A  +F +M  + I P+VVT+ SLIH  C A +   A  L
Sbjct: 260 PDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGL 319

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNR--------------------------------- 100
             EM +RGLQ + +TF  ++D  CK                                   
Sbjct: 320 VREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCM 379

Query: 101 --KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             +MDEA  L+  M   GV+PD      +V Y  ++   CK G   +A +L+Q +   G+
Sbjct: 380 VGRMDEARELVREMEAKGVKPD------VVTYSTILSAYCKNGDTHSAFQLNQQMLENGV 433

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +P+ +TY+  I  LC ++++  AH LF +M   G+ P+ V +T+L+    ++    + + 
Sbjct: 434 LPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALS 493

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKN 245
           L   M K  V+P     S++++ L K+
Sbjct: 494 LHDEMVKAGVLPDVVTYSVLINGLSKS 520



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  + N +T+  +IDG CK+GF+D A     +M+   I P+VV YN+LI+G+C   
Sbjct: 324 RERGL--QMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVG 381

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EA  L  EM  +G++ DVVT++ I+   CKN     A +L   M++ GV PDA    
Sbjct: 382 RMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDA---- 437

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             + Y  LI  LC+  +L +A  L +++   GL P+ VTY   I   C +  +++A  L 
Sbjct: 438 --ITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLH 495

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +M   GV P+ V ++ L+    +   T +   LL  +     +P
Sbjct: 496 DEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVP 540



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 120/231 (51%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + YN ++  L  +  +  A+  F  M  + + PNV TYN L+   C      EA  +
Sbjct: 121 PSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSV 179

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G   + VT+N ++   C+  ++D A RL+D+M +GG++P      N+V +  +
Sbjct: 180 LRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKP------NLVTFNSV 233

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+CK G++++AR++   + + GL P+ V+YN  +   C      +A  +F +M  KG+
Sbjct: 234 VNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGI 293

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V FT+L+    +     + + L+R M +R +       + ++D   K
Sbjct: 294 MPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCK 344



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 120/217 (55%), Gaps = 7/217 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YN +I+G C  G +D+A+EL  +M+ + + P+VVTY++++  +C   D + A  
Sbjct: 364 QPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQ 423

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++ G+  D +T++ ++  LC+ +++ +A  L   MI  G++PD       V Y  
Sbjct: 424 LNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDE------VTYTS 477

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G ++ A  L   + +AG++P+VVTY++ I+ L    +  +A  L   +  + 
Sbjct: 478 LIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEE 537

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P  + +  LM    R  E   V+ LL+    + +M
Sbjct: 538 PVPANIKYDALM-RCCRNAELKSVLALLKGFCMKGLM 573



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 104/261 (39%), Gaps = 59/261 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY+TI+   CK G    A +L  QM +  + P+ +TY+SLI   C      +A  
Sbjct: 399 KPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHV 458

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M+  GLQ D VT+  ++D  CK   ++ A  L D M++ GV PD      +V Y  
Sbjct: 459 LFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPD------VVTYSV 512

Query: 133 LIDGL----------------------------------CKIGKLKNARELSQSLTRAGL 158
           LI+GL                                  C+  +LK+   L +     GL
Sbjct: 513 LINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGL 572

Query: 159 MPNV----------------VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           M                     Y++ IH  C +  + KA      M   G APN     +
Sbjct: 573 MNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTIS 632

Query: 203 LMPSFIRKN---ETSKVIELL 220
           L+     K    E  +VI+ L
Sbjct: 633 LIRGLFEKGMVVEADQVIQQL 653



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 56/234 (23%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN----------------- 55
           +P+ VTY ++IDG CKEG V++A  L  +M    + P+VVTY+                 
Sbjct: 469 QPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQR 528

Query: 56  ---------------------------------SLIHGFCYANDGNEAEYLFIEMMDRGL 82
                                            +L+ GFC     NEA+ ++  ++DR  
Sbjct: 529 LLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNW 588

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142
             D   ++V++   C+   + +A      M+Q G  P++   I+      LI GL + G 
Sbjct: 589 NLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTIS------LIRGLFEKGM 642

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           +  A ++ Q L     + +       I     +  +D   D+   M   G+ P+
Sbjct: 643 VVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLPS 696


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V Y  +I GLC E  + +A+ +F  M++  + PN+ TYN+++ G+C      +A  L
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALEL 285

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+  GL  +VVTF +++D LCK  +M  A + L  M   GV P      NI  Y CL
Sbjct: 286 YQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP------NIFVYNCL 339

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L  A  L   + +  ++P+V TY+I I  LC  ++M++A  L  +M+ KG 
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN V + TL+  + ++    K IE+   M ++ + P     S ++D
Sbjct: 400 LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 128/242 (52%), Gaps = 6/242 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+  +IDGLCK   +  A++  + M    + PN+  YN LI G+C A + +EA  L
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+    +  DV T+++++  LC   +M+EA  LL  M + G  P+A      V Y  L
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNA------VTYNTL 409

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G ++ A E+   +T  G+ PN++T++  I   C   +M+ A  L+ +M +KG+
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V +T L+    +   T +   L + M +  + P    LS ++D L K+    ++I 
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529

Query: 254 QF 255
            F
Sbjct: 530 LF 531



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 19/239 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYNT+IDG CKEG ++KA E+  QM ++ I PN++T+++LI G+C A     A  L
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+ +GL  DVV +  ++D   K+    EA RL   M + G+ P      N+    CL
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHP------NVFTLSCL 514

Query: 134 IDGLCKIGKLKNAREL-------------SQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           IDGLCK G++ +A +L             +  L R+   PN V Y   I  LC D ++ K
Sbjct: 515 IDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFK 574

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           A   F DM   G+ P+      ++    R      V+ L   + K  ++P +S+  ++ 
Sbjct: 575 ASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLA 633



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P     N ++DGL K+G  D   +++  M     +PNVVTY +LI G C   D  +A  L
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+++ +   VV + +++  LC   ++ EA  +   M   G+ P      N+  Y  +
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLP------NLYTYNTM 269

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CKI  +K A EL Q +   GL+PNVVT+ I I  LC  ++M  A    +DM   GV
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PN  ++  L+  + +    S+ + L   ++K  ++P     SI++
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 13/205 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EA 70
           +PN +T++T+IDG CK G ++ A  L+ +M  + + P+VV Y +LI G  +  DGN  EA
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG--HFKDGNTKEA 492

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG----GVRPD----AF 122
             L  EM + GL  +V T + ++D LCK+ ++ +A +L  L   G    G + +    + 
Sbjct: 493 FRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF-LAKTGTDTTGSKTNELDRSL 551

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           C  N V Y  LI GLC  G++  A +    +  +GL P+V T  + I        +    
Sbjct: 552 CSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVM 611

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSF 207
            L  D+   G+ PN  ++  L   +
Sbjct: 612 MLQADILKMGIIPNSSVYRVLAKGY 636



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 11/206 (5%)

Query: 41  QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           +++     PNV  +  LI  F       EA +++ +M    +   +   N+++D L K  
Sbjct: 118 RLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKKG 172

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           + D   ++   M+  G  P      N+V YG LIDG C+ G    A  L   +    + P
Sbjct: 173 RFDTMWKVYGDMVARGASP------NVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFP 226

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            VV Y I I  LC + ++ +A  +F  M   G+ PN   + T+M  + +     K +EL 
Sbjct: 227 TVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELY 286

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNE 246
           + M    ++P      I++D L K +
Sbjct: 287 QEMLGDGLLPNVVTFGILIDGLCKTD 312



 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C PN V Y  +I GLC +G + KA + F  M+   + P+V T   +I G         A
Sbjct: 551 LCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGH------FRA 604

Query: 71  EYLFIEMMDRGLQSDVVTFNVI 92
            +L   MM   LQ+D++   +I
Sbjct: 605 MHLRDVMM---LQADILKMGII 623


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 138/270 (51%), Gaps = 35/270 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T+I+GLCK+G +D+A EL   M +    PNV+TY+ L+ G C A   ++  
Sbjct: 132 CLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGF 191

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----------- 120
            L  EM  RG Q DV+ +N +++ LCK+R++DEA  L+ LMI+ G  P            
Sbjct: 192 TLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELF 251

Query: 121 --------AF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                   AF          C  +++ Y  +I GLC+  +L +A+ L + +  A  +P+V
Sbjct: 252 CRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDV 311

Query: 163 VTYNITIHALCNDEQMD------KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           +TY+  I  LC D ++D       A ++   M+  G  PN   +  ++    R  ++ + 
Sbjct: 312 ITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA 371

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + LLR M    V+P  S  S+++  L K+ 
Sbjct: 372 LALLRRMIDSEVVPDLSSFSMVIGSLCKSH 401



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 125/235 (53%), Gaps = 5/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY ++I GLCK G +D+A EL  +M+D  I P V  +N +I G C A    +A 
Sbjct: 26  CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDAL 85

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F  +       D++TFN+++D L K+ +++EA ++ + M        + C  N+V Y 
Sbjct: 86  GYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESM-----HTSSQCLPNVVTYT 140

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GLCK GKL  A EL   +   G  PNV+TY++ +  LC   + DK   L  +M  +
Sbjct: 141 TVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRR 200

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  P+ +++ TL+    +     + +EL++ M +    P     + +++L  +++
Sbjct: 201 GFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSK 255



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 38/261 (14%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ + YNT+++GLCK   +D+A EL   M      P VVTYNSL+  FC +   + A  
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------ 120
           L   M +RG   DV+ +N ++  LC++ ++D+A  LL  M+     PD            
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLC 322

Query: 121 ------------AFCEI-----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
                       A CEI           N   Y  +I+GLC+  K + A  L + +  + 
Sbjct: 323 KDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSE 382

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK-- 215
           ++P++ ++++ I +LC    +D A+ +F  M  +   PN V +  L+    +  E  K  
Sbjct: 383 VVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAV 442

Query: 216 -VIELLRSMDKRNVMPYASIL 235
            V EL+    +  V  Y S+L
Sbjct: 443 RVFELMVESFRPGVATYNSVL 463



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 13/241 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDK------AKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           C P+ +TY+TIIDGLCK+  VD       A E+   MK     PN  TY  +I G C A 
Sbjct: 307 CVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRAR 366

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  L   M+D  +  D+ +F++++  LCK+  +D A ++  +M +   +P      
Sbjct: 367 KSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKP------ 420

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N VAY  LIDGL K G++  A  + + +  +   P V TYN  +  LC   ++++A  + 
Sbjct: 421 NPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMV 479

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M  K   P+   +  L+    R +   +  EL ++++ +       + +++V+ L K 
Sbjct: 480 EGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKK 539

Query: 246 E 246
           +
Sbjct: 540 K 540



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 105/203 (51%), Gaps = 7/203 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY  +I+GLC+     +A  L  +M D  + P++ +++ +I   C ++D + A 
Sbjct: 348 CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY 407

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M +R  + + V +  ++D L K  ++D+A R+ +LM++   RP       +  Y 
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRP------GVATYN 460

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DGLC +G+++ A  + + +      P+  +Y   I  LC    +++A++LF  +E K
Sbjct: 461 SVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAK 520

Query: 192 GVAPNCVIFTTLMPSFIRKNETS 214
           G A    ++  L+    +K   S
Sbjct: 521 GFAMEVGVYNVLVNELCKKKRLS 543



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 7/171 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +++ +I  LCK   +D A ++F  M +    PN V Y +LI G     + ++A  +
Sbjct: 385 PDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRV 444

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E+M    +  V T+N ++D LC   +++EA R+++ MI     PD        +YG L
Sbjct: 445 F-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDG------ASYGAL 497

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           I GLC++  ++ A EL Q++   G    V  YN+ ++ LC  +++  AH +
Sbjct: 498 IRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGV 548



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 61/106 (57%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P   TYN+++DGLC  G +++A  +   M  +   P+  +Y +LI G C  +   EA  
Sbjct: 453 RPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYE 512

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
           LF  +  +G   +V  +NV+++ELCK +++ +A  + + +I+ G +
Sbjct: 513 LFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558



 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 38/72 (52%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  +Y  +I GLC+   V++A ELF  ++ +     V  YN L++  C     ++A 
Sbjct: 487 CFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAH 546

Query: 72  YLFIEMMDRGLQ 83
            +  ++++ G +
Sbjct: 547 GVANKLIEAGYK 558


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 138/270 (51%), Gaps = 35/270 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T+I+GLCK+G +D+A EL   M +    PNV+TY+ L+ G C A   ++  
Sbjct: 132 CLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGF 191

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----------- 120
            L  EM  RG Q DV+ +N +++ LCK+R++DEA  L+ LMI+ G  P            
Sbjct: 192 TLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELF 251

Query: 121 --------AF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                   AF          C  +++ Y  +I GLC+  +L +A+ L + +  A  +P+V
Sbjct: 252 CRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDV 311

Query: 163 VTYNITIHALCNDEQMD------KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           +TY+  I  LC D ++D       A ++   M+  G  PN   +  ++    R  ++ + 
Sbjct: 312 ITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA 371

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + LLR M    V+P  S  S+++  L K+ 
Sbjct: 372 LALLRRMIDSEVVPDLSSFSMVIGSLCKSH 401



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 125/235 (53%), Gaps = 5/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY ++I GLCK G +D+A EL  +M+D  I P V  +N +I G C A    +A 
Sbjct: 26  CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDAL 85

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F  +       D++TFN+++D L K+ +++EA ++ + M        + C  N+V Y 
Sbjct: 86  GYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESM-----HTSSQCLPNVVTYT 140

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GLCK GKL  A EL   +   G  PNV+TY++ +  LC   + DK   L  +M  +
Sbjct: 141 TVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRR 200

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  P+ +++ TL+    +     + +EL++ M +    P     + +++L  +++
Sbjct: 201 GFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSK 255



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 38/261 (14%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ + YNT+++GLCK   +D+A EL   M      P VVTYNSL+  FC +   + A  
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------ 120
           L   M +RG   DV+ +N ++  LC++ ++D+A  LL  M+     PD            
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLC 322

Query: 121 ------------AFCEI-----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
                       A CEI           N   Y  +I+GLC+  K + A  L + +  + 
Sbjct: 323 KDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSE 382

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK-- 215
           ++P++ ++++ I +LC    +D A+ +F  M  +   PN V +  L+    +  E  K  
Sbjct: 383 VVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAV 442

Query: 216 -VIELLRSMDKRNVMPYASIL 235
            V EL+    +  V  Y S+L
Sbjct: 443 RVFELMVESFRPGVATYNSVL 463



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 13/241 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDK------AKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           C P+ +TY+TIIDGLCK+  VD       A E+   MK     PN  TY  +I G C A 
Sbjct: 307 CVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRAR 366

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  L   M+D  +  D+ +F++++  LCK+  +D A ++  +M +   +P      
Sbjct: 367 KSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKP------ 420

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N VAY  LIDGL K G++  A  + + +  +   P V TYN  +  LC   ++++A  + 
Sbjct: 421 NPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMV 479

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M  K   P+   +  L+    R +   +  EL ++++ +       + +++V+ L K 
Sbjct: 480 EGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKK 539

Query: 246 E 246
           +
Sbjct: 540 K 540



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 105/203 (51%), Gaps = 7/203 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY  +I+GLC+     +A  L  +M D  + P++ +++ +I   C ++D + A 
Sbjct: 348 CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY 407

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M +R  + + V +  ++D L K  ++D+A R+ +LM++   RP       +  Y 
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRP------GVATYN 460

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DGLC +G+++ A  + + +      P+  +Y   I  LC    +++A++LF  +E K
Sbjct: 461 SVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAK 520

Query: 192 GVAPNCVIFTTLMPSFIRKNETS 214
           G A    ++  L+    +K   S
Sbjct: 521 GFAMEVGVYNVLVNELCKKKRLS 543



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 7/171 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +++ +I  LCK   +D A ++F  M +    PN V Y +LI G     + ++A  +
Sbjct: 385 PDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRV 444

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E+M    +  V T+N ++D LC   +++EA R+++ MI     PD        +YG L
Sbjct: 445 F-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDG------ASYGAL 497

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           I GLC++  ++ A EL Q++   G    V  YN+ ++ LC  +++  AH +
Sbjct: 498 IRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGV 548



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 61/106 (57%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P   TYN+++DGLC  G +++A  +   M  +   P+  +Y +LI G C  +   EA  
Sbjct: 453 RPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYE 512

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
           LF  +  +G   +V  +NV+++ELCK +++ +A  + + +I+ G +
Sbjct: 513 LFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558



 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 38/72 (52%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  +Y  +I GLC+   V++A ELF  ++ +     V  YN L++  C     ++A 
Sbjct: 487 CFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAH 546

Query: 72  YLFIEMMDRGLQ 83
            +  ++++ G +
Sbjct: 547 GVANKLIEAGYK 558


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 138/260 (53%), Gaps = 21/260 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGN 68
           C PN  +YN +++GLC E    +A EL   M D+      P+VV+Y ++I+GF    D +
Sbjct: 154 CIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSD 213

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD------------EATRLLDLMIQGG 116
           +A   + EM+DRG+  DVVT++ I+  LCK + MD            E+ +L DLM++ G
Sbjct: 214 KAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIG 273

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           V+PD      I+ Y  LIDG C  GK+  A +L   +   GL PN VTY+  I+  C   
Sbjct: 274 VKPD------IITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 327

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           +M+ A  LF +ME  GV+P+ + +  ++    +   T+   EL   + +       S  +
Sbjct: 328 RMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 387

Query: 237 IIVDLLVKNEISLNSIPQFN 256
           II+  L KN+++ +++  F 
Sbjct: 388 IILHGLCKNKLTDDALQMFQ 407



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY+T+IDG C  G +D+A +L   M    + PN VTY++LI+G+C  +   +A  
Sbjct: 275 KPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALV 334

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       +I +  Y  
Sbjct: 335 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT------QIELSTYNI 388

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK     +A ++ Q+L    L     T+NI I AL    + D+A DLF+     G
Sbjct: 389 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 448

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN   +  +  + I +    ++ +L  SM+       + +L+ IV  L++
Sbjct: 449 LVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQ 500



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 109/207 (52%), Gaps = 22/207 (10%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  KPNTVTY+T+I+G CK   ++ A  LF +M+   ++P+++TYN ++ G         
Sbjct: 307 VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAA 366

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR------LLDLMIQGGVRPDAFC 123
           A+ L++ + + G Q ++ T+N+I+  LCKN+  D+A +      L+DL ++         
Sbjct: 367 AKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEA-------- 418

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                 +  +ID L K+G+   A++L  + +  GL+PN  TY +    +     +++   
Sbjct: 419 ----RTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQ 474

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           LFL ME  G    C + + ++   +R+
Sbjct: 475 LFLSMEDNG----CTVDSGMLNFIVRE 497



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P+  TY  +I   C+ G +D        +  +      +T+  L+ G C     ++A + 
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ---GGVRPDAFCEINIVA 129
           +   M + G   +V ++N +++ LC   +  EA  LL +M     GG  PD      +V+
Sbjct: 145 VLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPD------VVS 198

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK--------- 180
           Y  +I+G  K G    A      +   G++P+VVTY+  I ALC  + MDK         
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGR 258

Query: 181 ---AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
              +  LF  M   GV P+ + ++TL+  +    +  + ++LL  M    + P     S 
Sbjct: 259 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYST 318

Query: 238 IVD 240
           +++
Sbjct: 319 LIN 321



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 47/219 (21%)

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRPDAFCEIN 126
           +A ++F E++ RG  + +   N  + ++ ++      +R   +   G   V PD      
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGADEVTPD------ 86

Query: 127 IVAYGCLIDGLCKIGKL-----------------------------------KNARELS- 150
           +  YG LI   C+ G+L                                    +A ++  
Sbjct: 87  LCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVL 146

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF---LDMEVKGVAPNCVIFTTLMPSF 207
           + +T  G +PNV +YN  ++ LC++ +  +A +L     D    G  P+ V +TT++  F
Sbjct: 147 RRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            ++ ++ K       M  R ++P     S I+  L K +
Sbjct: 207 FKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQ 245


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 138/260 (53%), Gaps = 21/260 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGN 68
           C PN  +YN +++GLC E    +A EL   M D+      P+VV+Y ++I+GF    D +
Sbjct: 154 CIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSD 213

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD------------EATRLLDLMIQGG 116
           +A   + EM+DRG+  DVVT++ I+  LCK + MD            E+ +L DLM++ G
Sbjct: 214 KAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIG 273

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           V+PD      I+ Y  LIDG C  GK+  A +L   +   GL PN VTY+  I+  C   
Sbjct: 274 VKPD------IITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 327

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           +M+ A  LF +ME  GV+P+ + +  ++    +   T+   EL   + +       S  +
Sbjct: 328 RMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 387

Query: 237 IIVDLLVKNEISLNSIPQFN 256
           II+  L KN+++ +++  F 
Sbjct: 388 IILHGLCKNKLTDDALQMFQ 407



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 6/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY+T+IDG C  G +D+A +L   M    + PN VTY++LI+G+C  +   +A  
Sbjct: 275 KPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALV 334

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   G+  D++T+N+I+  L + R+   A  L   + + G       +I +  Y  
Sbjct: 335 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT------QIELSTYNI 388

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK     +A ++ Q+L    L     T+NI I AL    + D+A DLF+     G
Sbjct: 389 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 448

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           + PN   +  +  + I +    ++ +L  SM+       + +L+ IV  L++  +
Sbjct: 449 LVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRAL 503



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P+  TY  +I   C+ G +D        +  +      +T+  L+ G C     ++A + 
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ---GGVRPDAFCEINIVA 129
           +   M + G   +V ++N +++ LC   +  EA  LL +M     GG  PD      +V+
Sbjct: 145 VLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPD------VVS 198

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK--------- 180
           Y  +I+G  K G    A      +   G++P+VVTY+  I ALC  + MDK         
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGR 258

Query: 181 ---AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
              +  LF  M   GV P+ + ++TL+  +    +  + ++LL  M    + P     S 
Sbjct: 259 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYST 318

Query: 238 IVD 240
           +++
Sbjct: 319 LIN 321



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 47/219 (21%)

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRPDAFCEIN 126
           +A ++F E++ RG  + +   N  + ++ ++      +R   +   G   V PD      
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGADEVTPD------ 86

Query: 127 IVAYGCLIDGLCKIGKL-----------------------------------KNARELS- 150
           +  YG LI   C+ G+L                                    +A ++  
Sbjct: 87  LCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVL 146

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF---LDMEVKGVAPNCVIFTTLMPSF 207
           + +T  G +PNV +YN  ++ LC++ +  +A +L     D    G  P+ V +TT++  F
Sbjct: 147 RRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            ++ ++ K       M  R ++P     S I+  L K +
Sbjct: 207 FKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQ 245


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 146/255 (57%), Gaps = 14/255 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + KP+ V YNTIID +CK   V +A  LF +M  + I+ +VVTYN+LI+GFC      
Sbjct: 192 GRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLK 251

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM+ + +  +V T+N+++D LCK  K+ EA  +L +M++  V+PD      ++
Sbjct: 252 EAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPD------VI 305

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG   + ++K A+ +  +++  G+ P+V TY I I+  C ++ +D+A +LF +M
Sbjct: 306 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM 365

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVK 244
             K + P  V +++L+    +    S V +L+  M  R    +V+ Y+S    ++D L K
Sbjct: 366 HQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSS----LIDGLCK 421

Query: 245 NEISLNSIPQFNRQK 259
           N     +I  FN+ K
Sbjct: 422 NGHLDRAIALFNKMK 436



 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I+G CK   VD+A  LF +M  +N+ P +VTY+SLI G C +   +    L
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDL 396

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG  +DV+T++ ++D LCKN  +D A  L + M    +RP      NI  +  L
Sbjct: 397 IDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRP------NIFTFTIL 450

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+LK+A+E+ Q L   G   NV TYN+ I+  C    +++A  +   ME  G 
Sbjct: 451 LDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGC 510

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN   F T++ +  +K+E  K  +LLR M  R ++
Sbjct: 511 IPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 14/244 (5%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   +   P  + +N I+D   K      A  L  +++ + I P+++T N LI+ FC+ 
Sbjct: 48  NRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHM 107

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                   +  +++ RG   D VT N ++  LC   ++ +A    D ++  G       +
Sbjct: 108 GQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGF------Q 161

Query: 125 INIVAYGCLIDGLCKIGKLKNA----RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           +N V+Y  LI+G+CKIG  + A    R++   LT+    P+VV YN  I A+C  + + +
Sbjct: 162 LNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTK----PDVVMYNTIIDAMCKYQLVSE 217

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A+ LF +M VKG++ + V + TL+  F    +  + I LL  M  + + P     +I+VD
Sbjct: 218 AYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVD 277

Query: 241 LLVK 244
            L K
Sbjct: 278 ALCK 281



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 114/270 (42%), Gaps = 41/270 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T N +I+  C  G +     +  ++      P+ VT N+LI G C      +A +
Sbjct: 91  QPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALH 150

Query: 73  LFIEMMDRGLQ-----------------------------------SDVVTFNVIMDELC 97
              +++ +G Q                                    DVV +N I+D +C
Sbjct: 151 FHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMC 210

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K + + EA  L   M   G+  D      +V Y  LI G C +GKLK A  L   +    
Sbjct: 211 KYQLVSEAYGLFSEMAVKGISAD------VVTYNTLIYGFCIVGKLKEAIGLLNEMVLKT 264

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PNV TYNI + ALC + ++ +A  +   M    V P+ + ++TLM  +    E  K  
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            +  +M    V P     +I+++   KN++
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKM 354



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T+  ++DGLCK G +  A+E+F  +  +  + NV TYN +I+G C      EA  
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALT 500

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           +  +M D G   +  TF  I+  L K  + D+A +LL  MI  G+
Sbjct: 501 MLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 128/243 (52%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN+I+ G C  G   +A     +M+ + + PNVVTY+SL++  C      EA  +
Sbjct: 242 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 301

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  RGL+ D+ T+  ++   CK  ++ E+ +L DLM++ GV+PD      I+ Y  L
Sbjct: 302 FDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPD------IITYNTL 355

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L  S+   G+ P++VTY   I+  C   +MD A  LF +M   GV
Sbjct: 356 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 415

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +PN + +  ++        T+   EL  S+ K       S  +II+  L KN ++  ++ 
Sbjct: 416 SPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALR 475

Query: 254 QFN 256
            F 
Sbjct: 476 MFQ 478



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 130/232 (56%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY+++++ LCK G   +A+++F  M    + P++ TY +L+ G C      E+E 
Sbjct: 276 EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEK 335

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M+  G++ D++T+N ++D  C   KMDEAT+LL  M+  GV+PD      IV YG 
Sbjct: 336 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD------IVTYGT 389

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C++ ++ +A  L + +  +G+ PN++TYNI +  L +  +   A +L++ +   G
Sbjct: 390 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 449

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
                  +  ++    + N T + + + +++   ++       +I++  L+K
Sbjct: 450 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 501



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYNT+IDG C  G +D+A +L   M    + P++VTY +LI+G+C  +  ++A  
Sbjct: 346 KPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALA 405

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+  G+  +++T+N+I+  L   R+   A  L   + + G       ++ +  Y  
Sbjct: 406 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGT------QLELSTYNI 459

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK      A  + Q+L    L     T+NI I AL    +MD+A DLF      G
Sbjct: 460 ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANG 519

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+   ++ +  + I +    ++ +L  SM++      + +L SI+  LL + +I+
Sbjct: 520 LVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDIT 576



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  KP+ VTY T+I+G C+   +D A  LF +M    ++PN++TYN ++ G  +      
Sbjct: 378 VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAA 437

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ L++ +   G Q ++ T+N+I+  LCKN   DEA R    M Q     D   ++    
Sbjct: 438 AKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALR----MFQNLCLTD--LQLETRT 491

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  +I  L K G++  A++L  + +  GL+P+V TY++    L     +++  DLFL ME
Sbjct: 492 FNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSME 551

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             G + +  +  +++   +++ + ++    L  +D+++    AS  S +++
Sbjct: 552 ENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 602



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 18/229 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P   TY  +I   C+ G +D        +  +    + +T+  L+ G C     ++A + 
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ---GGVRPDAFCEINIVA 129
           +   M + G   DV ++N ++  LC   +  EA  LL +M     GG  PD      +V+
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPD------VVS 203

Query: 130 YGCLIDGLCKIG--------KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           Y  +++G  K G         +  A E+  ++ + G+MP+ +TYN  +H  C+  Q  +A
Sbjct: 204 YNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 263

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
                 M   GV PN V +++LM    +   +++  ++  SM KR + P
Sbjct: 264 IGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 312



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 18/222 (8%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           + P V TY  LI   C A   +        ++ +G + D +TF  ++  LC +++  +A 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 107 RL-LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT---RAGLMPNV 162
            + L  M + G  PD F      +Y  L+ GLC   + + A EL   +      G  P+V
Sbjct: 148 DIVLRRMTELGCIPDVF------SYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDV 201

Query: 163 VTYNITIHALCND--------EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           V+YN  ++    +        + MDKA ++   M   GV P+C+ + +++  +    +  
Sbjct: 202 VSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 261

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           + I  L+ M    V P     S +++ L KN  S  +   F+
Sbjct: 262 EAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 303


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 138/243 (56%), Gaps = 8/243 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV C  N VTYNT+I GLC+E  +++A ++  QMK + INPN++TYN+LI GFC   
Sbjct: 295 RERGVSC--NIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVG 352

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  L  ++  RGL   +VT+N+++   C+      A +++  M + G++P      
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSK---- 408

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V Y  LID   +   ++ A +L  S+   GL+P+V TY++ IH  C   QM++A  LF
Sbjct: 409 --VTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLF 466

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M  K   PN VI+ T++  + ++  + + ++LL+ M+++ + P  +    ++++L K 
Sbjct: 467 KSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKE 526

Query: 246 EIS 248
             S
Sbjct: 527 RKS 529



 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 137/268 (51%), Gaps = 43/268 (16%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM------------------------ 42
           EFG    PN V Y T+IDG CK+G ++KAK+LF +M                        
Sbjct: 191 EFGF--SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGV 248

Query: 43  -----------KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
                      +++ + PN+ TYN +++  C      +A  +F EM +RG+  ++VT+N 
Sbjct: 249 KKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNT 308

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++  LC+  K++EA +++D M   G+ P      N++ Y  LIDG C +GKL  A  L +
Sbjct: 309 LIGGLCREMKLNEANKVVDQMKSDGINP------NLITYNTLIDGFCGVGKLGKALSLCR 362

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            L   GL P++VTYNI +   C       A  +  +ME +G+ P+ V +T L+ +F R +
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIV 239
              K I+L  SM++  ++P     S+++
Sbjct: 423 NMEKAIQLRLSMEELGLVPDVHTYSVLI 450



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
            E G+V  P+  TY+ +I G C +G +++A  LF  M ++N  PN V YN++I G+C   
Sbjct: 435 EELGLV--PDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEG 492

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
               A  L  EM ++ L  +V ++  +++ LCK RK  EA RL++ MI  G+ P  
Sbjct: 493 SSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPST 548



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 7/238 (2%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           +I G     F   +  L    + E        Y  +I+ +  +   N +   F EM+D G
Sbjct: 65  VISGKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNG 124

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
                  FN ++  +  +   ++     +          +   +++ ++G LI G C+ G
Sbjct: 125 FVPGSNCFNYLLTFVVGSSSFNQWWSFFN-------ENKSKVVLDVYSFGILIKGCCEAG 177

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           +++ + +L   LT  G  PNVV Y   I   C   +++KA DLF +M   G+  N   +T
Sbjct: 178 EIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYT 237

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            L+    +     +  E+   M +  V P     + +++ L K+  + ++   F+  +
Sbjct: 238 VLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMR 295



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN V YNT+I G CKEG   +A +L  +M+++ + PNV +Y  +I   C      EAE
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533

Query: 72  YLFIEMMDRGLQSDVVTFNVI 92
            L  +M+D G+       ++I
Sbjct: 534 RLVEKMIDSGIDPSTSILSLI 554


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 147/253 (58%), Gaps = 18/253 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VT+N++++G+CK G ++ A+++F +M  E + P+ V+YN+L+ G+C A   +EA  
Sbjct: 217 KPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALS 276

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  +G+  DVVTF  ++  +CK   ++ A  L+  M + G+      ++N V +  
Sbjct: 277 VFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGL------QMNEVTFTA 330

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L +A    + + +  + P+VV YN  I+  C   +MD+A +L  +ME KG
Sbjct: 331 LIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKG 390

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVD-------- 240
           + P+ V ++T++ ++ +  +T    EL + M ++ V+P    Y+S++ ++ +        
Sbjct: 391 LKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAH 450

Query: 241 LLVKNEISLNSIP 253
           +L KN I L   P
Sbjct: 451 VLFKNMIKLGLQP 463



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I  LC  G   +A  +   M+     PNVVTYN+L+  F  A + + AE L
Sbjct: 148 PNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERL 207

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+D GL+ ++VTFN +++ +CK  KM++A ++ D M++ G+ PD       V+Y  L
Sbjct: 208 VGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDG------VSYNTL 261

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK G    A  +   +T+ G+MP+VVT+   IH +C    ++ A  L   M  +G+
Sbjct: 262 VGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGL 321

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             N V FT L+  F +K      +  +R M +  + P
Sbjct: 322 QMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKP 358



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 41/273 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT++ G CK G   +A  +F +M  + I P+VVT+ SLIH  C A +   A  L
Sbjct: 253 PDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTL 312

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M +RGLQ + VTF  ++D  CK   +D+A   +  M Q  ++P   C      Y  L
Sbjct: 313 VRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVC------YNAL 366

Query: 134 IDGLCKIGKLKNAREL-----------------------------------SQSLTRAGL 158
           I+G C +G++  AREL                                   +Q +   G+
Sbjct: 367 INGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGV 426

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +P+ +TY+  I  LC ++++  AH LF +M   G+ P+   +T+L+    ++    + + 
Sbjct: 427 LPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALS 486

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           L   M K  V+P     S++++ L K+  ++ +
Sbjct: 487 LHDKMVKAGVLPDVVTYSVLINGLSKSARAMEA 519



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 122/217 (56%), Gaps = 7/217 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN +I+G C  G +D+A+EL  +M+ + + P+VVTY+++I  +C   D + A  
Sbjct: 357 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 416

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+++G+  D +T++ ++  LC+ +++ +A  L   MI+ G++PD F       Y  
Sbjct: 417 LNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEF------TYTS 470

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G ++ A  L   + +AG++P+VVTY++ I+ L    +  +A  L   +  + 
Sbjct: 471 LIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEE 530

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P    +  LM    RK E   V+ LL+    + +M
Sbjct: 531 PIPANTKYDALM-HCCRKAELKSVLALLKGFCMKGLM 566



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  + N VT+  +IDG CK+GF+D A      M+   I P+VV YN+LI+G+C   
Sbjct: 317 RERGL--QMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVG 374

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EA  L  EM  +GL+ DVVT++ I+   CKN     A  L   M++ GV PDA    
Sbjct: 375 RMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDA---- 430

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             + Y  LI  LC+  +L +A  L +++ + GL P+  TY   I   C +  +++A  L 
Sbjct: 431 --ITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLH 488

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             M   GV P+ V ++ L+    +     +  +LL  +     +P
Sbjct: 489 DKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIP 533



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + YN ++  L  +  +  A+  F  M  + + PNV TYN LI   C      EA  +
Sbjct: 114 PSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSI 172

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G   +VVT+N ++    +  ++D A RL+ +M+ GG++P      N+V +  +
Sbjct: 173 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKP------NLVTFNSM 226

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+CK GK+++AR++   + R GL P+ V+YN  +   C      +A  +F +M  KG+
Sbjct: 227 VNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 286

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V FT+L+    +       + L+R M +R +       + ++D   K
Sbjct: 287 MPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCK 337



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 103/261 (39%), Gaps = 59/261 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY+TII   CK      A EL  QM ++ + P+ +TY+SLI   C     ++A  
Sbjct: 392 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHV 451

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M+  GLQ D  T+  ++D  CK   ++ A  L D M++ GV PD      +V Y  
Sbjct: 452 LFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPD------VVTYSV 505

Query: 133 LIDGL----------------------------------CKIGKLKNARELSQSLTRAGL 158
           LI+GL                                  C+  +LK+   L +     GL
Sbjct: 506 LINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGL 565

Query: 159 MPNV----------------VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           M                     Y++ IH  C    + KA      M  +G APN     +
Sbjct: 566 MNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTIS 625

Query: 203 LMPSFIRKN---ETSKVIELL 220
           L+          E  +VI+ L
Sbjct: 626 LIRGLFENGMVVEADQVIQQL 646



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 21/198 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH-------------- 59
           P+ VTY+ +I+GL K     +A++L  ++  E   P    Y++L+H              
Sbjct: 498 PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALL 557

Query: 60  -GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
            GFC     NEA+ ++  M+DR    D   ++V++   C+   + +A      M+Q G  
Sbjct: 558 KGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFA 617

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           P++   I+      LI GL + G +  A ++ Q L     + +       I    N+  +
Sbjct: 618 PNSTSTIS------LIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNV 671

Query: 179 DKAHDLFLDMEVKGVAPN 196
           D   D+   M   G+ P+
Sbjct: 672 DAVLDVLHGMAKDGLLPS 689



 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G +P+V+ YN  + AL +D  +  A   F  M   GVAPN   +  L+ +   +    + 
Sbjct: 111 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 217 IELLRSMDKRNVMP 230
           + +LR M      P
Sbjct: 170 LSILRDMRGAGCGP 183


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 130/216 (60%), Gaps = 5/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +I+ LCK   V++A  L+ +M  +N+ PN VTYNSLI G C +   + A  L
Sbjct: 333 PDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDL 392

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG  ++V+T+N +++ LCKN ++D+A  L++ M   G++PD +  +NI+ +G  
Sbjct: 393 IDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMY-TLNILLHGL- 450

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
              LCK  +LKNA+ L Q L   G  PNV TYNI I+  C +  +D+A+ L   ME  G 
Sbjct: 451 ---LCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGC 507

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           +PN + F  ++ + + K ET K  +LL  M  R ++
Sbjct: 508 SPNAITFKIIICALLEKGETDKAEKLLCEMIARGLL 543



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 130/262 (49%), Gaps = 33/262 (12%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V YNTIID LCK   V +A  LF +M  + I+ NVVTY+++IHGFC      
Sbjct: 196 GRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLT 255

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA     EM+ + +  DV  +N ++D L K  K+ EA  +L ++++  ++P      N++
Sbjct: 256 EALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKP------NVI 309

Query: 129 AYGCLIDG---------------------------LCKIGKLKNARELSQSLTRAGLMPN 161
            Y  LIDG                           LCKI +++ A  L + + +  ++PN
Sbjct: 310 TYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPN 369

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
            VTYN  I  LC   ++  A DL  +M  +G   N + + +L+    +  +  K I L+ 
Sbjct: 370 TVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALIN 429

Query: 222 SMDKRNVMPYASILSIIVDLLV 243
            M  + + P    L+I++  L+
Sbjct: 430 KMKDQGIQPDMYTLNILLHGLL 451



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N I+D   K         L  +++ + I P+  T N LI+ FC+    N A  +
Sbjct: 61  PPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSV 120

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  G Q D VT   ++  LC   ++ +A    D ++  G R D       V+YG L
Sbjct: 121 LSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQ------VSYGTL 174

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G+CKIG+ + A +L + +      PNVV YN  I  LC  + + +A +LF +M VKG+
Sbjct: 175 INGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGI 234

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + N V ++ ++  F    + ++ +  L  M  + + P   I + +VD L K
Sbjct: 235 SANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHK 285



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 126/290 (43%), Gaps = 72/290 (24%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAK-----------------------------------E 37
           +P+TVT  T+I GLC +G V KA                                    +
Sbjct: 130 QPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQ 189

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           L  ++      PNVV YN++I   C     +EA  LF EM  +G+ ++VVT++ I+   C
Sbjct: 190 LLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFC 249

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
              K+ EA   L+ M+   + PD +       Y  L+D L K GK+K A+ +   + +  
Sbjct: 250 IVGKLTEALGFLNEMVLKAINPDVY------IYNTLVDALHKEGKVKEAKNVLAVIVKTC 303

Query: 158 LMPNVVT---------------------------YNITIHALCNDEQMDKAHDLFLDMEV 190
           L PNV+T                           YNI I+ LC  +++++A +L+ +M  
Sbjct: 304 LKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQ 363

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
           K + PN V + +L+    +    S   +L+  M  R    NV+ Y S+++
Sbjct: 364 KNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLIN 413



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 111/234 (47%), Gaps = 8/234 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T N +I+  C  G ++ A  +  ++      P+ VT  +LI G C      +A +
Sbjct: 95  QPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALH 154

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA-FCEINIVAYG 131
              +++ +G + D V++  +++ +CK  +   A +LL        R D    E N+V Y 
Sbjct: 155 FHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLR-------RIDGRLTEPNVVMYN 207

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +ID LCK   +  A  L   ++  G+  NVVTY+  IH  C   ++ +A     +M +K
Sbjct: 208 TIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLK 267

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + P+  I+ TL+ +  ++ +  +   +L  + K  + P     + ++D   K+
Sbjct: 268 AINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKH 321



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 7/201 (3%)

Query: 48  NPNVVTYNSLIHGFCYANDG-NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           NP++   +S  H    + +  ++A + F  M+       ++ FN I+D   K +      
Sbjct: 24  NPSLPKLHSHFHSRPPSFENVDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVV 83

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
            L   +    ++PD F  +NI     LI+  C +G++  A  +   + + G  P+ VT  
Sbjct: 84  SLSRRLELKAIQPDFF-TLNI-----LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLT 137

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             I  LC   Q+ KA      +  +G   + V + TL+    +  ET   I+LLR +D R
Sbjct: 138 TLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGR 197

Query: 227 NVMPYASILSIIVDLLVKNEI 247
              P   + + I+D L K ++
Sbjct: 198 LTEPNVVMYNTIIDCLCKRKL 218


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 132/263 (50%), Gaps = 30/263 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ NTVTY+T++DGL K G ++ A  +  QM+D    P+ VTYN+LI GF       EA 
Sbjct: 274 CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAV 333

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAF 122
            L  EM++ G    VVT+  +   LC++ + DEA  +LD M   G  P         D  
Sbjct: 334 GLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGL 393

Query: 123 CEI---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           C+                      +++AY  LIDGLCK GK+  A E  + + RAG +P+
Sbjct: 394 CKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPD 453

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVT++I I+ LC+  ++D   +LF  M  +G  P+ V + TL+    R +   +  +L +
Sbjct: 454 VVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQ 513

Query: 222 SMDKRNVMPYASILSIIVDLLVK 244
            M    + P  S    ++  L++
Sbjct: 514 QMRSDGLSPDRSTRRTMIHGLLE 536



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 47/288 (16%)

Query: 9   GVVCKPNTVTYNT-----------------------------------IIDGLCKEGFVD 33
           G  C PN VTYNT                                   II GLCKEG ++
Sbjct: 129 GRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIE 188

Query: 34  KA----KELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89
            A     E+F  M +  ++P+V+T+NS++ G C      +A  +F   ++RG + +VVT+
Sbjct: 189 AAFRVVDEMF--MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTY 246

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149
           + ++D L K  KMDEA +LL  M++ G      C  N V Y  ++DGL K+G++++A  +
Sbjct: 247 STLIDGLSKMAKMDEALQLLAKMVELG------CRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            + +  AG +P+ VTYN  I      +++ +A  L  +M   G  P+ V +TTL     R
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
                + +E+L  M  R   P A   S IVD L K      ++  F +
Sbjct: 361 SGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEK 408



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +T+N+++DGLCKE  +  A  +F +  +    PNVVTY++LI G       +EA  L
Sbjct: 206 PDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQL 265

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++ G +++ VT++ ++D L K  +M++A  +L  M   G  PDA      V Y  L
Sbjct: 266 LAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDA------VTYNTL 319

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K  +L+ A  L + +  AG  P+VVTY    H LC   + D+A ++   M  +G 
Sbjct: 320 IDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGC 379

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM-PYASILSIIVDLLVK 244
           APN + +++++    +    ++ +     M +  V+ P+    S ++D L K
Sbjct: 380 APNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCK 431



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 8/236 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTY+T+IDGLC++  VDK  +L  +M      PN VTYN+L++         EA  
Sbjct: 98  RPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFS 157

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD--LMIQGGVRPDAFCEINIVAY 130
           L  +M   G   +++TF +I+  LCK  +++ A R++D   MI+ G+ PD      ++ +
Sbjct: 158 LLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPD------VITF 211

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++DGLCK  ++ +A  + +     G  PNVVTY+  I  L    +MD+A  L   M  
Sbjct: 212 NSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVE 271

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            G   N V ++T++   ++       + +LR M     +P A   + ++D   K +
Sbjct: 272 LGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQ 327



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 125/236 (52%), Gaps = 9/236 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEA 70
           C P  VTYNT+IDGLCK G ++ A  L+  M       P VVTY++LI G C  ++ ++ 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  EM  RG   + VT+N +++ L    +  EA  LL+ M   G  P+      ++ +
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPE------LITF 174

Query: 131 GCLIDGLCKIGKLKNARELSQS--LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           G +I GLCK G+++ A  +     +  +GL P+V+T+N  +  LC ++++  AH++F   
Sbjct: 175 GLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 234

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +G  PN V ++TL+    +  +  + ++LL  M +          S +VD L+K
Sbjct: 235 LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLK 290



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 112/208 (53%), Gaps = 9/208 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY T+  GLC+ G  D+A E+   M      PN +TY+S++ G C A    EA   
Sbjct: 346 PSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGY 405

Query: 74  FIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F +M  D  +   V+ ++ ++D LCK  K+DEA   L+ MI+ G  PD      +V +  
Sbjct: 406 FEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPD------VVTFSI 459

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLC  G++    EL + +   G +P++VTY   +  LC   ++D+A DLF  M   G
Sbjct: 460 LINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDG 519

Query: 193 VAPNCVIFTTLMPSF--IRKNETSKVIE 218
           ++P+     T++     + ++E +K I+
Sbjct: 520 LSPDRSTRRTMIHGLLEVNRDEDAKRIQ 547



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           +IDGLCK   VDKA  LF QM D+ I P+VVTY +LI G        EA  LF E   +G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLM-IQGGVRPDAFCEINIVAYGCLIDGLCKI 140
               VVT+N ++D LCK  +++ A  L D M I  G RP       +V Y  LIDGLC+ 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRP------TVVTYSTLIDGLCRD 114

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
            ++    +L + +   G  PN VTYN  ++AL    +  +A  L   M   G  P  + F
Sbjct: 115 HEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITF 174

Query: 201 TTLMPSFIRKNETSKVIELLRS--MDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
             ++    ++ E      ++    M +  + P     + ++D L K +  L++   F R
Sbjct: 175 GLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKR 233



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 63/110 (57%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           V  P+ + Y+ +IDGLCK G +D+A E   +M      P+VVT++ LI+G C A   +  
Sbjct: 414 VVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTG 473

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             LF  M +RG   D+VT+  ++D LC+  ++DEA  L   M   G+ PD
Sbjct: 474 LELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPD 523



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT++ +I+GLC  G +D   ELF  M +    P++VTY +L+   C A+  +EA  L
Sbjct: 452 PDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDL 511

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
           F +M   GL  D  T   ++  L +  + ++A R+ D
Sbjct: 512 FQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQD 548


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 136/238 (57%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + + N V YNT+I G+CK+  V+ A +L+ +M  + I+PNVVTY++LI GF       
Sbjct: 188 GKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLK 247

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +++   ++ D  TFN+++D  CK+RKM E   +  +M++ G+ PD      +V
Sbjct: 248 DAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPD------VV 301

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ +  ++ + G+ P++ +YNI I+  C  +++DKA +LF +M
Sbjct: 302 TYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEM 361

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             K + PN V + +L+    +    S  ++L+  M  R V P     + I+D L K  
Sbjct: 362 HCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTH 419



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +I G    G +  A +LF ++  ENI P+  T+N L+ GFC      E + +
Sbjct: 228 PNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTV 287

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  MM +G+  DVVT+N +MD  C  ++++ A  + + M QGGV PD      I +Y  L
Sbjct: 288 FAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPD------IRSYNIL 341

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CKI K+  A  L   +    ++PNVVTYN  I  L    ++  A  L   M  +GV
Sbjct: 342 INGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGV 401

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN + + +++ +  + ++  K I L+     + + P     +I++D L K E
Sbjct: 402 PPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVE 454



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 105/194 (54%), Gaps = 14/194 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +I+G CK   VDKA  LF +M  +NI PNVVTYNSLI G   +   + A  L
Sbjct: 333 PDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQL 392

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC- 123
             +M DRG+  +++T+N I+D L K  ++D+A  L+      G++P         D  C 
Sbjct: 393 VDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCK 452

Query: 124 ----EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
               +I +  Y  +I G CK G    A  L   +  +  +PN VTY ITI +L ++ + D
Sbjct: 453 VEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNEND 512

Query: 180 KAHDLFLDMEVKGV 193
           KA  LF +M  +G+
Sbjct: 513 KAEKLFREMITRGL 526



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 114/241 (47%), Gaps = 10/241 (4%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           ++ K N ++Y++          VD A  LF ++  +N  P    +N ++     +   + 
Sbjct: 45  LLTKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHT 104

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNR----KMDEATRLLDLMIQGGVRPDAFCEI 125
              L  +M  RG++ ++   N+++   C+      ++ +A    D ++  G   D     
Sbjct: 105 VLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQ---- 160

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V+YG LI GLCK+G+ + A +L Q +    +  N V YN  I+ +C D+ ++ A DL+
Sbjct: 161 --VSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLY 218

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M  KG++PN V ++ L+  F    +    I+L   +   N+ P     +I+VD   K+
Sbjct: 219 SEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKD 278

Query: 246 E 246
            
Sbjct: 279 R 279



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN++IDGL K G +  A +L  QM D  + PN++TYNS+I      +  ++A  L
Sbjct: 368 PNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIAL 427

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-------------- 119
             +  D+G+Q  + T+ +++D LCK    D      ++MI G  +               
Sbjct: 428 ITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMK 487

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
           D+ C  N V Y   I  L    +   A +L + +   GL+    +Y
Sbjct: 488 DSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGLLNRSASY 533



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 17/106 (16%)

Query: 13  KPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           +P+  TY  +IDGLCK EG+            D  +N    TYN +IHGFC     +EA 
Sbjct: 437 QPSMYTYTILIDGLCKVEGY------------DITVN----TYNVMIHGFCKKGLFDEAL 480

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
            L  +M D     + VT+ + +  L  N + D+A +L   MI  G+
Sbjct: 481 SLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGL 526


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 134/239 (56%), Gaps = 8/239 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV C  N VTYNT+I GLC+E   ++A ++  QMK   INPN++TYN+LI GFC   
Sbjct: 295 RERGVSC--NIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVG 352

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  L  ++  RGL   +VT+NV++   C+      A +++  M + G++P      
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSK---- 408

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V Y  LID   +   ++ A +L  S+   GL+P+V TY++ IH  C   QM++A  LF
Sbjct: 409 --VTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLF 466

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             M  K + PN VI+ T++  + ++  + + + L R M+++ + P  +  S ++ +L K
Sbjct: 467 KSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCK 525



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 134/241 (55%), Gaps = 8/241 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           REFG    PN V Y T+IDG CK+G ++KAK+LF +M    +  N  TY  LIHG     
Sbjct: 190 REFGF--SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG 247

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +   ++ +M + G+  ++ T+N +M++LCK+ +  +A ++ D M + GV        
Sbjct: 248 IKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGV------SC 301

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           NIV Y  LI GLC+  K   A ++   +    + PN++TYN  I   C+  ++ KA  L 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLC 361

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            D++ +G++P+ V +  L+  F RK +TS   ++++ M++R + P     +I++D   ++
Sbjct: 362 RDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARS 421

Query: 246 E 246
           +
Sbjct: 422 D 422



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           V  PN +TYNT+IDG C  G + KA  L   +K   ++P++VTYN L+ GFC   D + A
Sbjct: 333 VINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGA 392

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +  EM +RG++   VT+ +++D   ++  M+ A +L   M + G+ PD      +  Y
Sbjct: 393 AKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPD------VHTY 446

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI G C  G++  A  L +S+    L PN V YN  I   C +    +A  LF DME 
Sbjct: 447 SVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEE 506

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           K +APN   ++ L+    ++ +  +  +L+  M    + P  +I ++I
Sbjct: 507 KELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLI 554



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 102/238 (42%), Gaps = 7/238 (2%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           +I G  +  F   +  L    + E        Y  +I+ +  +   + + Y F EM+D+G
Sbjct: 65  VISGKIQSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKG 124

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
                  FN ++  +  +   ++     +   +  ++      +++ ++G +I G C+ G
Sbjct: 125 FVPGSNCFNNLLTFVVGSSSFNQWWCFFN---ESKIK----VVLDVYSFGIVIKGCCEAG 177

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           +++ + +L   L   G  PNVV Y   I   C   +++KA DLF +M   G+  N   +T
Sbjct: 178 EIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYT 237

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            L+    +     +  E+   M +  V P     + +++ L K+  + ++   F+  +
Sbjct: 238 VLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMR 295


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 123/244 (50%), Gaps = 6/244 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +   Y+ ++DGLCK+G V +A +LF QM  + I PN+ TYN LIHG C  +   EA 
Sbjct: 162 CNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAA 221

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM +G+  DV TFNVI     K   +  A  +   M   G+      E N+V Y 
Sbjct: 222 PLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGI------EHNVVTYN 275

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I   C + ++K+A E+   + R G +PN+VTYN  IH  C  + M+KA     +M   
Sbjct: 276 SIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNN 335

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ P+ V ++TL+  F +  +     EL   M K   +P     +II+D L K      +
Sbjct: 336 GLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEA 395

Query: 252 IPQF 255
           +  F
Sbjct: 396 MSLF 399



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 126/261 (48%), Gaps = 29/261 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTYN+II   C    +  A E+F  M  +   PN+VTYNSLIHG+C   + N+A Y  
Sbjct: 270 NVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFL 329

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFCEI-------- 125
            EM++ GL  DVVT++ ++   CK  K   A  L  +M + G  PD   C I        
Sbjct: 330 GEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKC 389

Query: 126 --------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                               +I+ Y  +++G+C  GKL +A EL   L+  G+  +VVTY
Sbjct: 390 HFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTY 449

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           NI I+ LC +  +D A DL + ME  G  P+   +   +   +R+ E SK  + L  M  
Sbjct: 450 NIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKG 509

Query: 226 RNVMPYASILSIIVDLLVKNE 246
           +     A+   ++++    N+
Sbjct: 510 KGFRANATTTKLLINYFSANK 530



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 10/228 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  T+N +I+ LC+         +   M    + P++VT+ ++++G C   +  +A  
Sbjct: 58  KPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIR 117

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               + D G +SD  T   I++ LCK      A   L  M       +  C +++ AY  
Sbjct: 118 FVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKM------EEQNCNLDVTAYSA 171

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DGLCK G +  A +L   +T  G+ PN+ TYN  IH LCN ++  +A  L  +M  KG
Sbjct: 172 VVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKG 231

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASILS 236
           + P+   F  +   F++    S+   +   M     + NV+ Y SI+ 
Sbjct: 232 IMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIG 279



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 42/244 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN++I G C+   ++KA     +M +  ++P+VVT+++LI GFC A     A+
Sbjct: 302 CLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAK 361

Query: 72  YLFIEMMDRG----LQS-------------------------------DVVTFNVIMDEL 96
            LF  M   G    LQ+                               D++ +++I++ +
Sbjct: 362 ELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGM 421

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C + K+++A  L   +   GV+      I++V Y  +I+GLCK G L +A +L   +   
Sbjct: 422 CSSGKLNDALELFSYLSSKGVK------IDVVTYNIMINGLCKEGLLDDAEDLLMKMEEN 475

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+  TYN+ +  L    ++ K+    + M+ KG   N    T L+ ++   N+ ++ 
Sbjct: 476 GCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATT-TKLLINYFSANKENRA 534

Query: 217 IELL 220
            ++ 
Sbjct: 535 FQVF 538



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N +   + K      A  L   M    + PNV T+N +I+  C  N       +
Sbjct: 24  PCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVINCLCRLNHTVFGFSV 83

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G++  +VTF  I++ LC    + +A R +D +   G   D +        G +
Sbjct: 84  LGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTR------GAI 137

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+G    A    + +       +V  Y+  +  LC D  + +A DLF  M  KG+
Sbjct: 138 INGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGI 197

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN   +  L+      +   +   LL +M ++ +MP     ++I    +K
Sbjct: 198 QPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLK 248


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 131/249 (52%), Gaps = 6/249 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN V+Y T+I+G   EG VDKA  LFL+M D  I PNVVTY ++I G C A   +
Sbjct: 196 GRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVD 255

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            AE +F +M+D+G++ D  T+N ++       K  E  R+L+ M   G++PD +      
Sbjct: 256 RAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCY------ 309

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            YG L++ LC  G+ + AR    S+ R G+ PNV  Y I IH       + + HDL   M
Sbjct: 310 TYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLM 369

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
              G++P+  IF  +  ++ +K    + + +   M ++ + P       ++D L K    
Sbjct: 370 VENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRV 429

Query: 249 LNSIPQFNR 257
            +++ +FN+
Sbjct: 430 DDAVLKFNQ 438



 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 133/251 (52%), Gaps = 9/251 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD---ENINPNVVTYNSLIHGFCYANDGN 68
           C P+ V+YNT++ G C E   ++A EL   M D    +  PNVV+Y ++I+GF      +
Sbjct: 161 CTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVD 220

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF+EMMDRG+Q +VVT+  ++D LCK + +D A  +   MI  GV+PD        
Sbjct: 221 KAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDN------D 274

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y CLI G   IGK K    + + ++  GL P+  TY   ++ LCN+ +  +A   F  M
Sbjct: 275 TYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSM 334

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             KG+ PN  I+  L+  +  K   S++ +LL  M +  + P   I +II     K  + 
Sbjct: 335 IRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMI 394

Query: 249 LNSIPQFNRQK 259
             ++  FN+ K
Sbjct: 395 DEAMHIFNKMK 405



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +  +ID LCK G VD A   F QM +E + PN+  +NSL++G C  +   +A+  
Sbjct: 411 PDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEF 470

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+++G++ DVV FN I+  LC   ++ +A RL+DLM + G RPD      +++Y  L
Sbjct: 471 YFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPD------VISYTTL 524

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C +G++  A +    +   GL P+  TYN  +H  C   ++D A+ +F +M   G+
Sbjct: 525 IGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI 584

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P  V ++T++         S+  EL  +M          I +II++ L KN
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKN 636



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY T+IDGLCK   VD+A+ +F QM D+ + P+  TYN LIHG+       E   
Sbjct: 235 QPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVR 294

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM   GL+ D  T+  +++ LC N +  EA    D MI+ G++P      N+  YG 
Sbjct: 295 MLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKP------NVAIYGI 348

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G    G L    +L   +   GL P+   +NI   A      +D+A  +F  M+ +G
Sbjct: 349 LIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQG 408

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++P+ V F  L+ +  +       +     M    V P
Sbjct: 409 LSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAP 446



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 131/247 (53%), Gaps = 8/247 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYNT++ G C+ G +D A  +F +M    I P VVTY++++HG       +EA+ 
Sbjct: 550 KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKE 609

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M+  G Q ++  +N+I++ L KN  +DEA +L   +           ++ I  +  
Sbjct: 610 LYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDF------QLEITTFNI 663

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K G+ ++A  L  +++  GL+P+V TY +    L  +  +++  DLF  ME  G
Sbjct: 664 MIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN-- 250
             PN  +   L+   + + + ++    L  +D++N    AS  ++++ LL ++E   +  
Sbjct: 724 TTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLISLLSRDEYHHHAT 783

Query: 251 SIPQFNR 257
           S+P+  R
Sbjct: 784 SLPEKYR 790



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 115/249 (46%), Gaps = 44/249 (17%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---------- 62
           KP+  TY ++++ LC  G   +A+  F  M  + I PNV  Y  LIHG+           
Sbjct: 305 KPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHD 364

Query: 63  -----------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                  YA     +EA ++F +M  +GL  DVV F  ++D LC
Sbjct: 365 LLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALC 424

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  ++D+A    + M+  GV P      NI  +  L+ GLC + K + A+E    +   G
Sbjct: 425 KLGRVDDAVLKFNQMMNEGVAP------NIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG 478

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI---RKNETS 214
           + P+VV +N  +  LC   Q+ KA  L   ME  G  P+ + +TTL+       R +E +
Sbjct: 479 IRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAA 538

Query: 215 KVIELLRSM 223
           K ++++ S+
Sbjct: 539 KSLDVMLSV 547



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 112/238 (47%), Gaps = 8/238 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE  +   P+  TY+ +I   C+ G ++     F  +       N +  N L+ G C A 
Sbjct: 84  RECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAK 143

Query: 66  DGNEAEYLFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              EA  + I+ M + G   DVV++N ++   C  ++ +EA  LL +M     R    C 
Sbjct: 144 RLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRS---CP 200

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V+Y  +I+G    G++  A  L   +   G+ PNVVTY   I  LC  + +D+A  +
Sbjct: 201 PNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGV 260

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           F  M  KGV P+   +  L+  ++   +  +V+ +L  M    + P    Y S+L+ +
Sbjct: 261 FQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYL 318



 Score = 38.5 bits (88), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            +G+V  P+  TY  I + L +EG++++  +LF  M+     PN    N+L+    +  D
Sbjct: 686 SYGLV--PDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGD 743

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
              A     ++ ++    +  T  +++  L ++     AT L
Sbjct: 744 ITRAGAYLSKLDEKNFSLEASTTAMLISLLSRDEYHHHATSL 785


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 134/243 (55%), Gaps = 8/243 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV C  N VTYNT+I GLC+E   ++A E+  QMK + INPN++TYN+LI GFC   
Sbjct: 295 RERGVSC--NIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVR 352

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  L  ++  RGL   +VT+N+++   CK      A +++  M + G++P      
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSK---- 408

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V Y  LID   +   ++ A +L  S+   GL P+V TY++ IH  C   +M++A  LF
Sbjct: 409 --VTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLF 466

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M  K   PN VI+ T++  + ++  + + + L R M+++ + P  +    ++++L K 
Sbjct: 467 KSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKE 526

Query: 246 EIS 248
             S
Sbjct: 527 RKS 529



 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 134/241 (55%), Gaps = 8/241 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           REFG    PN V Y T+IDG CK+G ++KAK+LF +M    +  N  TY  LIHG     
Sbjct: 190 REFGF--SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG 247

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +   ++ +M + G+  ++ T+N +M++LCK+ +  +A ++ D M + GV        
Sbjct: 248 IKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGV------SC 301

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           NIV Y  LI GLC+  K   A E+   +   G+ PN++TYN  I   C   ++ KA  L 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLC 361

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            D++ +G++P+ V +  L+  F +K +TS   ++++ M++R + P     +I++D   ++
Sbjct: 362 RDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARS 421

Query: 246 E 246
           +
Sbjct: 422 D 422



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 61/107 (57%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I G C +G +++A  LF  M ++   PN V YN+++ G+C       A  L
Sbjct: 441 PDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRL 500

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           F EM ++ L  +V ++  +++ LCK RK  EA  L++ MI  G+ P 
Sbjct: 501 FREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPS 547



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 99/238 (41%), Gaps = 7/238 (2%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           +I G  +  F   +  L    + E        Y  +I+ +  +   + + Y F EM+D+G
Sbjct: 65  VISGKIQSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKG 124

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
                  FN ++  +  +   ++     +              +++ ++G +I G C+ G
Sbjct: 125 FVPGSNCFNNLLTFVVGSSSFNQWWCFFN-------ESKIKVVLDVYSFGIVIKGCCEAG 177

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           +++ + +L   L   G  PNVV Y   I   C   +++KA DLF +M   G+  N   +T
Sbjct: 178 EIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYT 237

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            L+    +     +  E+   M +  V P     + +++ L K+  + ++   F+  +
Sbjct: 238 VLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMR 295



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YNT++ G CKEG   +A  LF +M+++ + PNV +Y  +I   C      EAE 
Sbjct: 475 EPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEG 534

Query: 73  LFIEMMDRGLQSDVVTFNVIMDEL--CKNRKMDE 104
           L  +M+D G+       N+I        +R MDE
Sbjct: 535 LVEKMIDSGIGPSDSILNLISRAKNDSHSRSMDE 568


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 34/274 (12%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+  +   P+TVT++T+IDGLCK G +D+A  +F  M      PNV+TYN+L++G C A+
Sbjct: 171 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 230

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-- 123
               A  +   M+D+G+  DV+T++V++D  CK  ++DEA  LL  M   G  P+     
Sbjct: 231 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPD 290

Query: 124 --------------------------------EINIVAYGCLIDGLCKIGKLKNARELSQ 151
                                           + +++ +G LIDGLCK G+++ AR++  
Sbjct: 291 KVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILD 350

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G+ PNVVTYN  +H LC   ++++A     +M   G  P+ + + +L+ +  R +
Sbjct: 351 LMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRAS 410

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            T   ++L+  +      P     +I+VD L K+
Sbjct: 411 RTDDALQLVSELKSFGWDPDTVTYNILVDGLWKS 444



 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 42/270 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYNTII+GLCK   +    ELF ++ +   +P+VVTYN+LI   C A D  EA  L
Sbjct: 35  PTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRL 94

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRP---------DAF 122
             +M  RG   +VVT++V+++ LCK  ++DEA  L+  M +    V P         D  
Sbjct: 95  HGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 154

Query: 123 CEINIVAYGC----------------------LIDGLCKIGKLKNARELSQSLTRAGLMP 160
           C+ ++ A  C                      LIDGLCK G++  A  +   +   G +P
Sbjct: 155 CKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVP 214

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           NV+TYN  ++ LC  ++M++AH +   M  KGV P+ + ++ L+ +F + +   + +ELL
Sbjct: 215 NVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 274

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISLN 250
             M  R   P         ++LV ++++ N
Sbjct: 275 HGMASRGCTP---------NVLVPDKVTFN 295



 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 131/242 (54%), Gaps = 15/242 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYANDGNE 69
           C PN VTY+ +I+GLCK G +D+A+EL  +M  K  ++ PN++TYNS + G C  +   E
Sbjct: 103 CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAE 162

Query: 70  AEYLFIEMMDRGLQ--SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           A  L   + D  L+   D VTF+ ++D LCK  ++DEA  + D MI GG  P      N+
Sbjct: 163 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVP------NV 216

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + Y  L++GLCK  K++ A  + +S+   G+ P+V+TY++ + A C   ++D+A +L   
Sbjct: 217 ITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG 276

Query: 188 MEVKGVAPNCVI-----FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           M  +G  PN ++     F  L+    +     +   L   M  +N+ P       ++D L
Sbjct: 277 MASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 336

Query: 243 VK 244
            K
Sbjct: 337 CK 338



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 129/266 (48%), Gaps = 46/266 (17%)

Query: 19  YNTIIDGLCKEGFVDKAKELFL-QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           YN ++  LC+ G   +A E+F  +M  + + P +VTYN++I+G C +ND      LF E+
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++RG   DVVT+N ++D LCK   ++EA RL   M   G  P      N+V Y  LI+GL
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVP------NVVTYSVLINGL 117

Query: 138 CKIGKLKNARELSQSLTRAG--LMPNVVTYN----------------------------- 166
           CK+G++  AREL Q +TR    ++PN++TYN                             
Sbjct: 118 CKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV 177

Query: 167 --------ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
                     I  LC   Q+D+A  +F DM   G  PN + +  L+    + ++  +   
Sbjct: 178 SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHA 237

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           ++ SM  + V P     S++VD   K
Sbjct: 238 MIESMVDKGVTPDVITYSVLVDAFCK 263



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N +I G CK G  ++A  LF +M  +N+ P+V+T+ +LI G C A     A  +
Sbjct: 289 PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDI 348

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M + G+  +VVT+N ++  LCK+ +++EA + L+ M+  G  PD+      + YG L
Sbjct: 349 LDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDS------ITYGSL 402

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  LC+  +  +A +L   L   G  P+ VTYNI +  L    + ++A  +  +M  KG 
Sbjct: 403 VYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGH 462

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   F        R    +  +ELLR +  + ++P A+  S I+D + ++
Sbjct: 463 QPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRS 514



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 13/239 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN--INPNVVTYNSLIHGFCYANDGNEAE 71
           PN +TYN+ +DGLCK+    +A EL   ++D +  ++P+ VT+++LI G C     +EA 
Sbjct: 142 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEAC 201

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G   +V+T+N +++ LCK  KM+ A  +++ M+  GV PD      ++ Y 
Sbjct: 202 SVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPD------VITYS 255

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNV-----VTYNITIHALCNDEQMDKAHDLFL 186
            L+D  CK  ++  A EL   +   G  PNV     VT+NI I   C     ++A  LF 
Sbjct: 256 VLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFE 315

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +M  K + P+ + F  L+    +  +     ++L  M    V P     + +V  L K+
Sbjct: 316 EMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKS 374



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 6/212 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T+  +IDGLCK G V+ A+++   M +  + PNVVTYN+L+HG C +    EA  
Sbjct: 323 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQ 382

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM+  G   D +T+  ++  LC+  + D+A +L+  +   G  PD       V Y  
Sbjct: 383 FLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDT------VTYNI 436

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGL K GK + A  + + +   G  P+  T+      L     +    +L   +  KG
Sbjct: 437 LVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKG 496

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           + P+    ++++    R  +   V  +++  +
Sbjct: 497 MLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528



 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 162 VVTYNITIHALCNDEQMDKAHDLFL-DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           V  YNI + +LC      +A ++F  +M   GVAP  V + T++    + N+    +EL 
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
             + +R   P     + ++D L K
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCK 84


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 10/235 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K + VT+N +I+ LCKEG + KAKE    M+   I PNVVTYN++IHG+C     
Sbjct: 183 FRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRV 242

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  +F  M  RG++ D  T+   +  +CK  K++EA+ +L+ M + G+RP A      
Sbjct: 243 EGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTA------ 296

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LIDG C  G L+ A +    + R GLMP V TYN+ IHAL  D +MD+A  +  +
Sbjct: 297 VTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKE 356

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           M  KG+ P+ V +  L+  + R     K   L   M  + + P    Y S++ ++
Sbjct: 357 MSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVL 411



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 8/224 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  P++VTYN +I+G C+ G V KA  L  +M  + I P  VTY SLI+       
Sbjct: 359 EKGLV--PDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGR 416

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A+ LF +++ +G+  D++ FN ++D  C N  MD A  +L  M Q  V PD      
Sbjct: 417 MKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDE----- 471

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V +  L+ G C+ GK++ AREL + +   G+ P+ ++YN  I        M  A  +  
Sbjct: 472 -VTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRD 530

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +M   G  P  + +  L+    +  E     +LL+ M  + + P
Sbjct: 531 EMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITP 574



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 6/192 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTY ++I  L K G + +A +LF ++  + I P+++ +N+LI G C   + + A  
Sbjct: 398 QPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFA 457

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM    +  D VTFN +M   C+  K++ A  L++ M   G++PD       ++Y  
Sbjct: 458 MLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDH------ISYNT 511

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K G +K+A  +   +   G  P ++TYN  I  LC +E+ D A  L  +M  KG
Sbjct: 512 LISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKG 571

Query: 193 VAPNCVIFTTLM 204
           + PN   + +L+
Sbjct: 572 ITPNDNTYLSLI 583



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 6/234 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GV+     V Y+ +I   C+    D A E F  MK + + P+V   N ++  F  +N   
Sbjct: 114 GVLGIKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTE 173

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  L+ EM    ++S VVTFN++++ LCK  K+ +A   + LM   G++P      N+V
Sbjct: 174 KAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKP------NVV 227

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  +I G C  G+++ AR +   +   G+ P+  TY   I  +C + ++++A  +   M
Sbjct: 228 TYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKM 287

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +  G+ P  V + TL+  +  K       +    M +  +MP  S  ++++  L
Sbjct: 288 KEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHAL 341



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYN +I  L  +  +D+A  +  +M ++ + P+ VTYN LI+G+C   +  +A  L
Sbjct: 329 PTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTL 388

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +G+Q   VT+  ++  L K  +M +A  L + +++ G+ PD      ++ +  L
Sbjct: 389 HDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPD------LIMFNAL 442

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  G +  A  + + + +  ++P+ VT+N  +   C + +++ A +L  +M+ +G+
Sbjct: 443 IDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGI 502

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+ + + TL+  + ++ +      +   M      P     + ++  L KNE
Sbjct: 503 KPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNE 555



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 15/145 (10%)

Query: 2   ANGN--REFGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVV 52
           ANGN  R F ++ +       P+ VT+NT++ G C+EG V+ A+EL  +MK   I P+ +
Sbjct: 448 ANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHI 507

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           +YN+LI G+    D  +A  +  EM+  G    ++T+N ++  LCKN + D A +LL  M
Sbjct: 508 SYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEM 567

Query: 113 IQGGVRPDAFCEINIVAYGCLIDGL 137
           I  G+ P      N   Y  LI+G+
Sbjct: 568 ISKGITP------NDNTYLSLIEGI 586



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +N +IDG C  G +D+A  +  +M    + P+ VT+N+L+ G C       A  L
Sbjct: 434 PDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAAREL 493

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG++ D +++N ++    K   M +A R+ D M+  G  P       ++ Y  L
Sbjct: 494 IEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNP------TLLTYNAL 547

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           I GLCK  +  +A +L + +   G+ PN  TY   I  + N E
Sbjct: 548 IQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGNVE 590


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I G CK   VD+  ELF +M    +  N VTY +LIHGF  A + + A+
Sbjct: 392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQ 451

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  D++T+++++D LC N K++ A  + + + +  + PD      I  Y 
Sbjct: 452 IVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPD------IYTYN 505

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++  +L  SL+  G+ PNVVTY   +   C     ++A  LF +M+ +
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEE 565

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  P+   + TL+ + +R  + +   EL+R M     +  AS + ++ ++L
Sbjct: 566 GPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNML 616



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 129/250 (51%), Gaps = 9/250 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  V YNTIID LC    V+ A  LF +M ++ I PNVVTYNSLI   C     ++A  
Sbjct: 253 EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  +VVTF+ ++D   K  K+ EA +L D MI+  + PD F       Y  
Sbjct: 313 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF------TYSS 366

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+ + + +      PNVVTYN  I   C  +++D+  +LF +M  +G
Sbjct: 367 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG 426

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN---EISL 249
           +  N V +TTL+  F +  E      + + M    V+P     SI++D L  N   E +L
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486

Query: 250 NSIPQFNRQK 259
                  R K
Sbjct: 487 VVFEYLQRSK 496



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY  +++GLCK G +D A  L  +M+   I P VV YN++I   C   + N+A 
Sbjct: 217 CQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDAL 276

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM ++G++ +VVT+N ++  LC   +  +A+RLL  MI+  + P      N+V + 
Sbjct: 277 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP------NVVTFS 330

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GKL  A +L   + +  + P++ TY+  I+  C  +++D+A  +F  M  K
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 390

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
              PN V + TL+  F +     + +EL R M +R    N + Y +++
Sbjct: 391 DCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TY+ +I+  C+   +  A  +  +M      P++VT NSL++GFC+ N  ++A  L 
Sbjct: 115 NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M++ G Q D  TFN ++  L ++ +  EA  L+D M+  G +PD      +V YG ++
Sbjct: 175 GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPD------LVTYGIVV 228

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G +  A  L + + +  + P VV YN  I ALCN + ++ A +LF +M+ KG+ 
Sbjct: 229 NGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIR 288

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           PN V + +L+         S    LL  M +R + P     S ++D  VK
Sbjct: 289 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT N++++G C    +  A  L  QM +    P+  T+N+LIHG    N  +EA  
Sbjct: 148 EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVA 207

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ +G Q D+VT+ ++++ LCK   +D A  LL  M QG + P       +V Y  
Sbjct: 208 LVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEP------GVVIYNT 261

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LC    + +A  L   +   G+ PNVVTYN  I  LCN  +   A  L  DM  + 
Sbjct: 262 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 321

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + PN V F+ L+ +F+++ +  +  +L   M KR++ P    Y+S++
Sbjct: 322 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 368



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY T++ G C++G  ++A  LF +MK+E   P+  TYN+LI       D   +  
Sbjct: 533 KPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAE 592

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM       D  T  ++ + L   R
Sbjct: 593 LIREMRSCRFVGDASTIGLVTNMLHDGR 620


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 126/213 (59%), Gaps = 6/213 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +Y+ +I+GLCK   VD+A +LF +M  +N+ PN VTY+SLI G C +   ++   L
Sbjct: 332 PNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDL 391

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+ +RG  ++++T+N +++ LCKN ++D+A  LL  M   G++PD      +  Y  L
Sbjct: 392 IDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPD------MSTYTTL 445

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+LK+A+ + Q L   G   N+  Y + I+ LC +   D+A  L   ME  G 
Sbjct: 446 VDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGC 505

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
            P+ V + TL+ +  + N+  K ++LLR M  R
Sbjct: 506 MPDAVTYETLISALFKNNKNGKAVKLLREMIAR 538



 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 136/231 (58%), Gaps = 10/231 (4%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           ++ +P+ + Y  IID  CK+  V  A +L+ +M  + I PNVVT+NSLI+GFC      E
Sbjct: 188 LLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKE 247

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  EM    +  +V TFN+++D LCK  ++ +AT +L +MI+ GV P      N+V 
Sbjct: 248 AVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEP------NVVT 301

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+DG   + ++  A+ +  +++  G+ PNV +Y++ I+ LC ++ +D+A  LF +M 
Sbjct: 302 YTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMH 361

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
           +K + PN V +++L+    +    S V +L+  ++ R    N++ Y S+L+
Sbjct: 362 LKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLN 412



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 128/261 (49%), Gaps = 29/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N +IDGLCKEG V KA  +   M  + + PNVVTY SL+ G+    + N+A+++
Sbjct: 262 PNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHV 321

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
           F  +  RG+  +V +++V+++ LCKN+ +DEA +L   M    + P         D  C+
Sbjct: 322 FNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCK 381

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                NI+ Y  L++GLCK  ++  A  L   +   G+ P++ T
Sbjct: 382 SGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMST 441

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   +  LC + ++  A  ++ D+  KG   N  ++T ++    ++    + + LL  M+
Sbjct: 442 YTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQME 501

Query: 225 KRNVMPYASILSIIVDLLVKN 245
               MP A     ++  L KN
Sbjct: 502 DNGCMPDAVTYETLISALFKN 522



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 11/246 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TVT NT++ GLC  G V +A      +  +  + + V+Y +LI+G C + +   A  
Sbjct: 120 QPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQ 179

Query: 73  LFIEMMDRGL---QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           L  ++   GL   + DV+ +  I+D  CK++ + +A  L   MI   + P      N+V 
Sbjct: 180 LLRKI--EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYP------NVVT 231

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LI G C +G+LK A  L   ++   + PNV T+NI I  LC + ++ KA  +   M 
Sbjct: 232 FNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMI 291

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
            +GV PN V +T+LM  +    E +K   +  ++  R V P     S++++ L KN++  
Sbjct: 292 KQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVD 351

Query: 250 NSIPQF 255
            ++  F
Sbjct: 352 EAVKLF 357



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 7/230 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           V+Y T+I+GLCK G    A +L  +++    + P+V+ Y ++I  FC      +A  L+ 
Sbjct: 159 VSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYS 218

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           EM+ + +  +VVTFN ++   C   ++ EA  LL+ M    V P      N+  +  LID
Sbjct: 219 EMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNP------NVYTFNILID 272

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLCK G++K A  +   + + G+ PNVVTY   +      ++++KA  +F  + ++GV P
Sbjct: 273 GLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTP 332

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           N   ++ ++    +     + ++L + M  +N+ P     S ++D L K+
Sbjct: 333 NVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKS 382



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 11/234 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N I+  L K      A     QM+ + I P + T+N LI+ F +    N A  +
Sbjct: 51  PPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSM 110

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  G Q D VT N ++  LC N K+ EA    D +I+     D       V+YG L
Sbjct: 111 VAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQ------VSYGTL 164

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLM---PNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           I+GLCK G+ + A +L + +   GL+   P+V+ Y   I + C D+ +  A+DL+ +M V
Sbjct: 165 INGLCKSGETRAALQLLRKI--EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIV 222

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           K + PN V F +L+  F    +  + + LL  M   NV P     +I++D L K
Sbjct: 223 KKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCK 276



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY T++DGLCK G +  A+ ++  +  +    N+  Y  +I+G C     +EA  
Sbjct: 436 QPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALS 495

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           L  +M D G   D VT+  ++  L KN K  +A +LL  MI
Sbjct: 496 LLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMI 536


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CKEG ++ A E+  +M    + PNVV YN+L+ G C A    E E
Sbjct: 330 CTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETE 389

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM D+    D VTFN+++D  C+N  +D    LL+ M++ G  PD      ++ Y 
Sbjct: 390 ELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPD------VITYT 443

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L +S+T  G  PN ++Y I +  LC+ E+   A DL   M  +
Sbjct: 444 TVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQ 503

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G   N + F TL+    +K    + IELL+ M      P     S ++D L K
Sbjct: 504 GCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 556



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG +D+A  L   M      PN ++Y  ++ G C A    +AE
Sbjct: 435 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAE 494

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G   + +TFN +++ LCK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 495 DLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD------LISYS 548

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK   A EL   +   G+ PN + Y+    AL  + +++K   +F +++  
Sbjct: 549 TVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDT 608

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +  + V++  ++ S  ++ ET + IE L  M     +P  S  +I++
Sbjct: 609 TIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILI 656



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VT+N ++D  C+ G VD+  EL  QM +    P+V+TY ++I+GFC     +EA 
Sbjct: 400 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAV 459

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M   G + + +++ +++  LC   +  +A  L+  MIQ G      C +N + + 
Sbjct: 460 MLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG------CPLNPITFN 513

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+ LCK G ++ A EL + +   G  P++++Y+  I  L    + D+A +L   M  K
Sbjct: 514 TLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNK 573

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G++PN +I++++  +  R+   +KVI++  ++    +   A + + ++  L K
Sbjct: 574 GMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCK 626



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 6/211 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +++ +C +G VD+A  L   +      P+VV+YN+++ G C A      + L  EM+ 
Sbjct: 233 NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 292

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
                ++VTFN ++  LC+N   +    +L  M++ G  PD      I  Y  +IDG+CK
Sbjct: 293 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPD------IRMYATIIDGICK 346

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G L+ A E+   +   GL PNVV YN  +  LC+ E+ ++  +L  +M  K    + V 
Sbjct: 347 EGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVT 406

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           F  L+  F +     +VIELL  M +   MP
Sbjct: 407 FNILVDFFCQNGLVDRVIELLEQMLEHGCMP 437



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 8/219 (3%)

Query: 12  CKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           CKPNT++Y  ++ GLC  E +VD A++L  QM  +    N +T+N+LI+  C      +A
Sbjct: 470 CKPNTISYTIVLKGLCSAERWVD-AEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQA 528

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  +M+  G   D+++++ ++D L K  K DEA  LL++M+  G+ P      N + Y
Sbjct: 529 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP------NTIIY 582

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +   L + G++    ++  ++    +  + V YN  I +LC   + ++A +    M  
Sbjct: 583 SSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVS 642

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            G  PN   +T L+     +    +  E+L  +  +  +
Sbjct: 643 SGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 681



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 12/232 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
            V   PN  TY  ++  LC  G +  A  +  +M      P    Y+ ++   C      
Sbjct: 152 AVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFR 211

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINI 127
            A  +  ++  RG   DV   N++++ +C    +DEA  LL DL       P   CE ++
Sbjct: 212 SAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDL-------PSFGCEPDV 264

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V+Y  ++ GLC   +    +EL + + R    PN+VT+N  I  LC +   ++ H++   
Sbjct: 265 VSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQ 324

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
           M   G  P+  ++ T++    ++       E+L  M     K NV+ Y ++L
Sbjct: 325 MVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLL 376



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P    Y+ I++  C+ G    A  +   +       +V   N +++  C     +EA 
Sbjct: 190 CAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEAL 249

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +L  ++   G + DVV++N ++  LC  ++      L++ M++    P      NIV + 
Sbjct: 250 HLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPP------NIVTFN 303

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G  +   E+   +   G  P++  Y   I  +C +  ++ AH++   M   
Sbjct: 304 TLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSY 363

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN V + TL+          +  ELL  M  ++        +I+VD   +N
Sbjct: 364 GLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQN 417



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 19/246 (7%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YN ++ G C+ G ++ A+ L   +    + PN  TY  ++   C      +A  +  EM 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            RG       ++VI++  C+      A R+L DL  +G       C +++     +++ +
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG-------CALDVGNCNLVLNAI 239

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G +  A  L + L   G  P+VV+YN  +  LC  ++     +L  +M      PN 
Sbjct: 240 CDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNI 299

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD-------LLVKNEISLN 250
           V F TL+    R     +V E+L  M +    P   + + I+D       L V +EI LN
Sbjct: 300 VTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEI-LN 358

Query: 251 SIPQFN 256
            +P + 
Sbjct: 359 RMPSYG 364


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 121/216 (56%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I+G CK   VD+A  LF +M  +N+ P +VTY+SLI G C +        L
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDL 396

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG  +DV+T++ ++D LCKN  +D A  L + M    +RP      NI  +  L
Sbjct: 397 IDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRP------NIFTFTIL 450

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+LK+A+E+ Q L   G   NV TYN+ I+  C    +++A  +   ME  G 
Sbjct: 451 LDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGC 510

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN   F T++ +  +K+E  K  +LLR M  R ++
Sbjct: 511 IPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546



 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 144/255 (56%), Gaps = 14/255 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + KPN   Y+TIID LCK   V +A  LF +M  + I+ +VVTY++LI+GFC      
Sbjct: 192 GRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLK 251

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM+ + +  +V T+N+++D LCK  K+ EA  +L +M++  V+PD      ++
Sbjct: 252 EAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPD------VI 305

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG   + ++K A+ +  +++  G+ P+V TY I I+  C ++ +D+A +LF +M
Sbjct: 306 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM 365

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVK 244
             K + P  V +++L+    +      V +L+  M  R    +V+ Y+S    ++D L K
Sbjct: 366 HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSS----LIDGLCK 421

Query: 245 NEISLNSIPQFNRQK 259
           N     +I  FN+ K
Sbjct: 422 NGHLDRAIALFNKMK 436



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 30/263 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN ++D LCKEG V +AK +   M    + P+V+TY++L+ G+    +  +A+++
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
           F  M   G+  DV T+ ++++  CKN+ +DEA  L   M Q  + P         D  C+
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                +++ Y  LIDGLCK G L  A  L   +    + PN+ T
Sbjct: 387 SGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFT 446

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           + I +  LC   ++  A ++F D+  KG   N   +  ++    ++    + + +L  M+
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKME 506

Query: 225 KRNVMPYA-SILSIIVDLLVKNE 246
               +P A +  +II+ L  K+E
Sbjct: 507 DNGCIPNAFTFETIIIALFKKDE 529



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 121/240 (50%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   +   P  + +N I+D   K      A  L  +++ + I P+++T N LI+ FC+ 
Sbjct: 48  NRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHM 107

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                   +  +++ RG   D VT N ++  LC   ++ +A    D ++  G       +
Sbjct: 108 GQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGF------Q 161

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +N V+Y  LI+G+CKIG  + A +L + +      PNV  Y+  I ALC  + + +A+ L
Sbjct: 162 LNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGL 221

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +M VKG++ + V ++TL+  F  + +  + I LL  M  + + P     +I+VD L K
Sbjct: 222 FSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 113/270 (41%), Gaps = 41/270 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T N +I+  C  G +     +  ++      P+ VT N+LI G C      +A +
Sbjct: 91  QPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALH 150

Query: 73  LFIEMMDRGLQSDVVT-----------------------------------FNVIMDELC 97
              +++ +G Q + V+                                   ++ I+D LC
Sbjct: 151 FHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALC 210

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K + + EA  L   M   G+  D      +V Y  LI G C  GKLK A  L   +    
Sbjct: 211 KYQLVSEAYGLFSEMTVKGISAD------VVTYSTLIYGFCIEGKLKEAIGLLNEMVLKT 264

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PNV TYNI + ALC + ++ +A  +   M    V P+ + ++TLM  +    E  K  
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            +  +M    V P     +I+++   KN++
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKM 354



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           ++ FN I+D   K +    A  L   +   G++PD      ++    LI+  C +G++  
Sbjct: 59  IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPD------LITLNILINCFCHMGQITF 112

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
              +   + + G  P+ VT N  I  LC   Q+ KA      +  +G   N V + TL+ 
Sbjct: 113 GFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN 172

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              +  +T   I+LLR +D R   P   + S I+D L K ++
Sbjct: 173 GVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQL 214



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T+  ++DGLCK G +  A+E+F  +  +  + NV TYN +I+G C      EA  
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALT 500

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           +  +M D G   +  TF  I+  L K  + D+A +LL  MI  G+
Sbjct: 501 MLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+++I+G C    +D+AK +F  M  ++  PNVVTY++LI GFC A    E   L
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL 420

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  + VT+  ++    + R  D A  +   M+  GV P      NI+ Y  L
Sbjct: 421 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHP------NILTYNIL 474

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK GKL  A  + + L R+ + P++ TYNI I  +C   +++   +LF ++ +KGV
Sbjct: 475 LDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGV 534

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +PN + + T++  F RK    +   LL+ M +   +P +   + ++
Sbjct: 535 SPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLI 580



 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 128/231 (55%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY+T+I G CK   V++  ELF +M    +  N VTY +LIHGF  A D + A+
Sbjct: 394 CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 453

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  +++T+N+++D LCKN K+ +A  + + + +  + PD      I  Y 
Sbjct: 454 MVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD------IYTYN 507

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++  EL  +L+  G+ PNV+ YN  I   C     ++A  L   M+  
Sbjct: 508 IMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKED 567

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  +     EL++ M        AS + ++ ++L
Sbjct: 568 GPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 618



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY T+++GLCK G +D A  L  +M+   I  +VV YN++I G C     ++A 
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDAL 278

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM ++G++ DV T++ ++  LC   +  +A+RLL  MI+  + P      N+V + 
Sbjct: 279 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINP------NVVTFS 332

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GKL  A +L   + +  + P++ TY+  I+  C  +++D+A  +F  M  K
Sbjct: 333 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 392

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
              PN V ++TL+  F +     + +EL R M +R    N + Y +++
Sbjct: 393 DCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V YNTIIDGLCK   +D A  LF +M ++ I P+V TY+SLI   C     ++A  
Sbjct: 255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  +VVTF+ ++D   K  K+ EA +L D MI+  + PD F       Y  
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF------TYSS 368

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+ + + +      PNVVTY+  I   C  +++++  +LF +M  +G
Sbjct: 369 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG 428

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V +TTL+  F +  +      + + M    V P     +I++D L KN
Sbjct: 429 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 481



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    +  A  L  QM +    P+  T+ +LIHG    N  +EA  
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVA 209

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ RG Q D+VT+  +++ LCK   +D A  LL  M +G +  D      +V Y  
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEAD------VVIYNT 263

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK   + +A  L   +   G+ P+V TY+  I  LCN  +   A  L  DM  + 
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK 323

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + PN V F+ L+ +F+++ +  +  +L   M KR++ P    Y+S++
Sbjct: 324 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 370



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY+  I+  C+   +  A  +  +M      P++VT +SL++G+C++   ++A  L  +M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++ G + D  TF  ++  L  + K  EA  L+D M+Q G +PD      +V YG +++GL
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPD------LVTYGTVVNGL 233

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G +  A  L + + +  +  +VV YN  I  LC  + MD A +LF +M+ KG+ P+ 
Sbjct: 234 CKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDV 293

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +++L+         S    LL  M +R + P     S ++D  VK
Sbjct: 294 FTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 340



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YNT+I G C++G  ++A  L  +MK++   PN  TYN+LI       D   +  L
Sbjct: 536 PNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAEL 595

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNR 100
             EM   G   D  T  ++ + L   R
Sbjct: 596 IKEMRSCGFAGDASTIGLVTNMLHDGR 622


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++ G    G  +K   LF +M+   + PN+ TYN LI  +C   +   A  L
Sbjct: 71  PNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSL 130

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RG+  +VV++N ++  LC++ K+ +A +LLD+M   G RP      +I+ +  L
Sbjct: 131 FDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRP------SIITFNLL 184

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K GK+ NA      +  AG  P+ VTYN+ I   C    M +A+    DM+ +G+
Sbjct: 185 VDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGL 244

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            P  V +T L+ SF R+N   K  E+L  M+K  +   A    ++V  L
Sbjct: 245 EPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRAL 293



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 108/212 (50%), Gaps = 6/212 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T+N ++DG  K G +  A   F QMK     P+ VTYN LI GFC A D   A  
Sbjct: 175 RPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANR 234

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +M +RGL+   VT+ +++D   +   M +A  +L  M + G+  DA        YG 
Sbjct: 235 ALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAH------TYGV 288

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  LC  G +K+AR+L QS+   G+ P+ V Y++ I+    +    KA  L ++M  KG
Sbjct: 289 LVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           + PN   +   +    + ++  +   LL  M+
Sbjct: 349 LIPNSASYGLTIRVLCKDDKCQEAEALLDDME 380



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 127/282 (45%), Gaps = 38/282 (13%)

Query: 3   NGNREFGVV---------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT 53
           +G RE G            +PN  TYN +I   C+ G  ++A+ LF +M    I  NVV+
Sbjct: 86  HGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVS 145

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           YN+LI G C      +A  L   M   G +  ++TFN+++D   K  KM  A    + M 
Sbjct: 146 YNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMK 205

Query: 114 QGGVRPDA---------FC--------------------EINIVAYGCLIDGLCKIGKLK 144
             G +P A         FC                    E   V Y  LID   +   + 
Sbjct: 206 AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMG 265

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            A E+   + +AGL  +  TY + + ALC +  M  A  LF  M  KGV P+ VI+  ++
Sbjct: 266 KAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMI 325

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             + R+  + K ++L+  M ++ ++P ++   + + +L K++
Sbjct: 326 YGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDD 367



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           T    +  LC  G V  A  +  +  K  +   +V    +L++G C   D  EA  +F E
Sbjct: 4   TTAAAVRRLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDE 63

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   GL  + VT+  +M     + + ++   L + M +GGV P      N+  Y CLI  
Sbjct: 64  MPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEP------NLYTYNCLIGE 117

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            C+ G+ + AR L   +   G++ NVV+YN  I  LC   ++  A  L   M  +G  P+
Sbjct: 118 WCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPS 177

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            + F  L+  + +  + S  +     M      P A   ++++
Sbjct: 178 IITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 15/212 (7%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS-----DVVTFNVIMDELCKNRKMDEATR 107
           T  + +   C A D   A    + M+ RG +S     DV     +++  CK   + EA R
Sbjct: 4   TTAAAVRRLCAAGDVRSA----LAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARR 59

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           + D M   G+ P      N V Y  L+ G    G+ +    L + + R G+ PN+ TYN 
Sbjct: 60  VFDEMPLLGLAP------NEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNC 113

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I   C   + ++A  LF +M V+G+  N V + TL+    R  +     +LL  M    
Sbjct: 114 LIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEG 173

Query: 228 VMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
             P     +++VD   K     N++P FN+ K
Sbjct: 174 TRPSIITFNLLVDGYGKAGKMSNALPFFNQMK 205


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 128/233 (54%), Gaps = 7/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY  +IDG CK G ++KA ++   M+     PNVVTY+SL+HG C A D ++A  
Sbjct: 181 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD 240

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M  +G   +VVT+  ++  LC   K+D A  L+D M      PD       V+Y  
Sbjct: 241 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDT------VSYNA 294

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME-VK 191
           L+DG C++G+++ A++L + +     +P+ +TY   +   CN  ++++A  L  +M+   
Sbjct: 295 LLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 354

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P+ V ++ ++  + R     +  E ++ M  RNV P A   S ++D L K
Sbjct: 355 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCK 407



 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 128/237 (54%), Gaps = 7/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN VTY++++ GLCK G +D+A +LF +M  +   PNVVTY +LIHG C A+  +
Sbjct: 212 GRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVD 271

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  L  EM       D V++N ++D  C+  +++EA +L   M      PD       +
Sbjct: 272 AARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDR------I 325

Query: 129 AYGCLIDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            Y CL+ G C   +L+ AR L +++ T AG+ P+VVTY+I +      ++  +A +   +
Sbjct: 326 TYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQE 385

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M  + VAPN V +++L+    +       +E+L++M  + V P     + ++  L +
Sbjct: 386 MIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCR 442



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 7/218 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY +++DGLC++G +D+A E+  +MK + + P+  T+++LI G+C A   +EA  L
Sbjct: 111 PDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKL 170

Query: 74  FIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           + E++     + DVVT+  ++D  CK+  +++A ++L      GV     C  N+V Y  
Sbjct: 171 YKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKML------GVMEGRKCVPNVVTYSS 224

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLCK G L  A +L + +T  G +PNVVTY   IH LC   ++D A  L  +M    
Sbjct: 225 LLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 284

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             P+ V +  L+  + R     +  +L + M  ++ +P
Sbjct: 285 CPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLP 322



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 129/245 (52%), Gaps = 15/245 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+TV+YN ++DG C+ G +++AK+LF +M  ++  P+ +TY  L+ GFC A+   EA 
Sbjct: 285 CPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEAR 344

Query: 72  YLFIEM-MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           +L   M    G+  DVVT+++++    + ++  EA   +  MI   V P+A      V Y
Sbjct: 345 FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNA------VTY 398

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDGLCK G++ +A E+ +++    + P+V T+N  I ALC    MD+A  L + M  
Sbjct: 399 SSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAA 458

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM--------DKRNVMPYASILSIIVDLL 242
            G+ P  V +TTL+  F R        EL   M           N++P  +  ++I  L 
Sbjct: 459 HGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLC 518

Query: 243 VKNEI 247
              EI
Sbjct: 519 KAREI 523



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 35/231 (15%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD-ENINPNVVTYNSLIHGFCYA 64
           REF     PN  TYN +++GLCK     KA E+  +M+D +++ P++VTY+++I+GFC  
Sbjct: 34  REF---VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQ 90

Query: 65  NDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF- 122
            + + A  +  EM+ R G+  DVVT+  ++D LC++ KMD A  ++  M   GV PD F 
Sbjct: 91  GEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFT 150

Query: 123 -----------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
                                         + ++V Y  LIDG CK G L+ A ++   +
Sbjct: 151 FSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVM 210

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
                +PNVVTY+  +H LC    +D+A DLF  M  KG  PN V +TTL+
Sbjct: 211 EGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLI 261



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 106/195 (54%), Gaps = 14/195 (7%)

Query: 48  NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
            P VVT+  +I GFC AN   +A   F E M   +  +  T+NV+++ LCK R   +A  
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACF-EKMREFVAPNERTYNVVVNGLCKARLTSKAYE 62

Query: 108 LLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE-LSQSLTRAGLMPNVVTY 165
           +L  M  G  V PD      +V Y  +I+G CK G++  A E L + +TR G+ P+VVTY
Sbjct: 63  VLKEMRDGKSVAPD------LVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTY 116

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR---- 221
              +  LC D +MD+A ++  +M++KGV P+   F+ L+  +    +  + ++L +    
Sbjct: 117 TSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILT 176

Query: 222 -SMDKRNVMPYASIL 235
            S  K +V+ Y +++
Sbjct: 177 SSSWKPDVVTYTALI 191



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 5/143 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+++IDGLCK G VD A E+   M ++ + P+V T+NS+I   C   D +EA  L
Sbjct: 393 PNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKL 452

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV---AY 130
            + M   GL+  +VT+  +++   +  +M+ A  L ++M +   +  +    N+V   A+
Sbjct: 453 LVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSS--AANLVPEQAF 510

Query: 131 GCLIDGLCKIGKLKNARELSQSL 153
             LI GLCK  ++  A  + + L
Sbjct: 511 SALIRGLCKAREIDKAMAVVEEL 533



 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE--------NINPNVVTYNSLIHGFCYA 64
           +P  VTY T+++G  + G ++ A ELF  M+ +        N+ P    +++LI G C A
Sbjct: 462 EPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQ-AFSALIRGLCKA 520

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
            + ++A  +  E+  R  +        I+D L +  + +EA +L++ + + G+
Sbjct: 521 REIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CKEG ++ A E+  +M    + PNVV YN+L+ G C A    E E
Sbjct: 293 CTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETE 352

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM D+    D VTFN+++D  C+N  +D    LL+ M++ G  PD      ++ Y 
Sbjct: 353 ELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPD------VITYT 406

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L +S+T  G  PN ++Y I +  LC+ E+   A DL   M  +
Sbjct: 407 TVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQ 466

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G   N + F TL+    +K    + IELL+ M      P     S ++D L K
Sbjct: 467 GCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 519



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG +D+A  L   M      PN ++Y  ++ G C A    +AE
Sbjct: 398 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAE 457

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G   + +TFN +++ LCK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 458 DLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD------LISYS 511

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK   A EL   +   G+ PN + Y+    AL  + +++K   +F +++  
Sbjct: 512 TVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDT 571

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +  + V++  ++ S  ++ ET + IE L  M     +P  S  +I++
Sbjct: 572 TIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILI 619



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 6/211 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +++ +C +G VD+A  L   +      P+VV+YN+++ G C A      + L  EM+ 
Sbjct: 196 NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
                ++VTFN ++  LC+N   +    +L  M++ G  PD      I  Y  +IDG+CK
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPD------IRMYATIIDGICK 309

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G L+ A E+   +   GL PNVV YN  +  LC+ E+ ++  +L  +M  K    + V 
Sbjct: 310 EGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVT 369

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           F  L+  F +     +VIELL  M +R  MP
Sbjct: 370 FNILVDFFCQNGLVDRVIELLEQMLERGCMP 400



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 8/219 (3%)

Query: 12  CKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           CKPNT++Y  ++ GLC  E +VD A++L  QM  +    N +T+N+LI+  C      +A
Sbjct: 433 CKPNTISYTIVLKGLCSAERWVD-AEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQA 491

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  +M+  G   D+++++ ++D L K  K DEA  LL++M+  G+ P      N + Y
Sbjct: 492 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP------NTIIY 545

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +   L + G++    ++  ++    +  + V YN  I +LC   + ++A +    M  
Sbjct: 546 SSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVS 605

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            G  PN   +T L+     +    +  E+L  +  +  +
Sbjct: 606 SGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 644



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  ++  LC  G +  A  +  +M      P    Y+ ++   C       A  +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             ++  RG   DV   N++++ +C    +DEA  LL DL       P   CE ++V+Y  
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDL-------PSFGCEPDVVSYNA 232

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLC   +    +EL + + R    PN+VT+N  I  LC +   ++ H++   M   G
Sbjct: 233 VLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG 292

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
             P+  ++ T++    ++       E+L  M     K NV+ Y ++L
Sbjct: 293 CTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLL 339



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P    Y+ I++  C+ G    A  +   +       +V   N +++  C     +EA 
Sbjct: 153 CAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEAL 212

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +L  ++   G + DVV++N ++  LC  ++      L++ M++    P      NIV + 
Sbjct: 213 HLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPP------NIVTFN 266

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G  +   E+   +   G  P++  Y   I  +C +  ++ AH++   M   
Sbjct: 267 TLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSY 326

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN V + TL+          +  ELL  M  ++        +I+VD   +N
Sbjct: 327 GLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQN 380



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 19/246 (7%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YN ++ G C+ G ++ A+ L   +    + PN  TY  ++   C      +A  +  EM 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            RG       ++VI++  C+      A R+L DL  +G       C +++     +++ +
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG-------CALDVGNCNLVLNAI 202

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G +  A  L + L   G  P+VV+YN  +  LC  ++     +L  +M      PN 
Sbjct: 203 CDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNI 262

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD-------LLVKNEISLN 250
           V F TL+    R     +V E+L  M +    P   + + I+D       L V +EI LN
Sbjct: 263 VTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEI-LN 321

Query: 251 SIPQFN 256
            +P + 
Sbjct: 322 RMPSYG 327


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 129/239 (53%), Gaps = 6/239 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + Y+TI+D LCK+G V +A  LF  M  + I P++V YNSLIHG C      EA  L   
Sbjct: 213 IAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGN 272

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           MM +G+  +V TFNV++D  CK+  +  A  ++  M+  GV PD      +V Y  +I G
Sbjct: 273 MMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPD------VVTYNSVISG 326

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            C + ++ +A ++ + +   G +PN+VTY+  IH  C  + ++KA  L  +M   G+ P+
Sbjct: 327 HCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPD 386

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
            V ++TL+  F +  +     EL  +M + +  P     +II+D L K +    +I  F
Sbjct: 387 VVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLF 445



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 126/263 (47%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN++I G C    +  A ++F  M  +   PN+VTY+SLIHG+C   + N+A +
Sbjct: 314 EPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALF 373

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFC-------- 123
           L  EM++ GL  DVVT++ ++   CK  K + A  L   M +    P+   C        
Sbjct: 374 LLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLF 433

Query: 124 --------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                               E+N+V Y  ++DG+C  GKL +A+EL   L   G+  +VV
Sbjct: 434 KCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVV 493

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            Y   I  LC +  +D A +L + ME  G  PN   +   +   +++ + S+  + L  M
Sbjct: 494 AYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLM 553

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
             + +   A+   +++     N+
Sbjct: 554 KGKGLSADATTTELLISYFSANK 576



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +   P  VT+ T+I+GLC EG V +A      ++D     N  TY ++I+G C A D 
Sbjct: 133 FKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDT 192

Query: 68  NEAEYLFIEMMDRGLQSDVV-TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
           + A     ++  R    DVV  ++ IMD LCK+  + EA  L   M   G++PD      
Sbjct: 193 SGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPD------ 246

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +VAY  LI GLC  G+ K A  L  ++ R G+MPNV T+N+ +   C D  + +A  +  
Sbjct: 247 LVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMG 306

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            M   GV P+ V + +++      ++    +++   M  +  +P    Y+S++
Sbjct: 307 FMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLI 359



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YN++I GLC  G   +A  L   M  + I PNV T+N L+  FC     + A+ 
Sbjct: 244 QPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKT 303

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+  G++ DVVT+N ++   C   +M +A ++ +LMI  G  P      N+V Y  
Sbjct: 304 IMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLP------NLVTYSS 357

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK   +  A  L   +  +GL P+VVT++  I   C   + + A +LF  M    
Sbjct: 358 LIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHD 417

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             PN      ++    +    S+ I L R M+K N+     I +I++D
Sbjct: 418 QHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLD 465



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 42/271 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N ++D  CK+G + +AK +   M    + P+VVTYNS+I G C  +   +A  +
Sbjct: 280 PNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKV 339

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   ++VT++ ++   CK + +++A  LL  M+  G+ PD      +V +  L
Sbjct: 340 FELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPD------VVTWSTL 393

Query: 134 IDGLCKIGKLKNAREL-----------------------------SQSLT------RAGL 158
           I G CK GK + A+EL                             S++++      +  L
Sbjct: 394 IGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNL 453

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
             NVV YNI +  +C+  +++ A +LF  +  KG+  + V +TT++    ++        
Sbjct: 454 ELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAEN 513

Query: 219 LLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
           LL  M++   +P     ++ V  LL + +IS
Sbjct: 514 LLMKMEENGCLPNEFTYNVFVRGLLQRYDIS 544



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 7/207 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT++T+I G CK G  + AKELF  M + + +PN+ T   ++ G       +EA  L
Sbjct: 385 PDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISL 444

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM    L+ +VV +N+++D +C   K+++A  L   +   G++      I++VAY  +
Sbjct: 445 FREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIK------IDVVAYTTM 498

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK G L +A  L   +   G +PN  TYN+ +  L     + ++    L M+ KG+
Sbjct: 499 IKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGL 558

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELL 220
           + +    T L+ S+   N+ +  + + 
Sbjct: 559 SADATT-TELLISYFSANKENSALHVF 584



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 11/229 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T   II+ LC          +   M    ++P VVT+ +LI+G C   +   A  
Sbjct: 103 KPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAAR 162

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV-AYG 131
               + D G QS+  T+  I++ LCK      A   L+  I+G       C++++V AY 
Sbjct: 163 FADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLE-KIKG-----RNCDLDVVIAYS 216

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++D LCK G +  A  L   +T  G+ P++V YN  IH LCN  +  +A  L  +M  K
Sbjct: 217 TIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRK 276

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           G+ PN   F  L+ +F +    S+   ++  M    V P    Y S++S
Sbjct: 277 GIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVIS 325



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 7/201 (3%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
            I P+V T   +I+  C+ N       +   M   G+   VVTF  +++ LC    +  A
Sbjct: 101 GIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARA 160

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA-RELSQSLTRAGLMPNVVT 164
            R  D +   G + +++       YG +I+GLCK G    A   L +   R   +  V+ 
Sbjct: 161 ARFADSLEDMGHQSNSY------TYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIA 214

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+  + +LC D  + +A +LF  M  KG+ P+ V + +L+          +   LL +M 
Sbjct: 215 YSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMM 274

Query: 225 KRNVMPYASILSIIVDLLVKN 245
           ++ +MP     +++VD   K+
Sbjct: 275 RKGIMPNVQTFNVLVDNFCKD 295



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y T+I GLCKEG +D A+ L ++M++    PN  TYN  + G     D + +  
Sbjct: 489 KIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTK 548

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
             + M  +GL +D  T  +++     N++
Sbjct: 549 YLLLMKGKGLSADATTTELLISYFSANKE 577



 Score = 37.4 bits (85), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TYN  + GL +   + ++ +  L MK + ++ +  T   LI  F  AN  N A 
Sbjct: 523 CLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSADATTTELLISYFS-ANKENSAL 581

Query: 72  YLFIE 76
           ++F++
Sbjct: 582 HVFLQ 586


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 132/227 (58%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VT+N++++GLCK G ++ A+++F +M  E + P+VV+YN+L+ G+C     +E+  
Sbjct: 220 KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLA 279

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  RGL  DVVTF  ++   CK   +++A  L+  M + G+R      +N V +  
Sbjct: 280 VFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLR------MNEVTFTA 333

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L +A    + + + G+ P+VV YN  I+  C   +MD A +L  +ME K 
Sbjct: 334 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 393

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           V P+ V ++T++  + +        +L + M K+ V+P A   S ++
Sbjct: 394 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 138/261 (52%), Gaps = 29/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT++ G CK G + ++  +F +M    + P+VVT+ SLIH  C A +  +A  L
Sbjct: 256 PDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVAL 315

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M +RGL+ + VTF  ++D  CK   +D+A   ++ M + G++P   C          
Sbjct: 316 VAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCK 375

Query: 124 -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                              + ++V Y  +I G CK+G L +A +L+Q + + G++P+ +T
Sbjct: 376 LGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 435

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+  I  LC +++++ A +LF +M   GV P+   +TTL+    ++    K + L   M 
Sbjct: 436 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495

Query: 225 KRNVMPYASILSIIVDLLVKN 245
           ++ V+P     S++++ L K+
Sbjct: 496 RKGVLPDVVTYSVLINGLSKS 516



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 130/227 (57%), Gaps = 9/227 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G+  +P+ V YN +I+G CK G +D A+EL  +M+ + + P+VVTY+++I G+C   
Sbjct: 355 RKCGI--QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVG 412

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + + A  L  +M+ +G+  D +T++ ++  LC+ +++++A  L + M+Q GV+PD F   
Sbjct: 413 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF--- 469

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y  LIDG CK G ++ A  L   + R G++P+VVTY++ I+ L    +  +AH L 
Sbjct: 470 ---TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL 526

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             +  +   P+ + +  LM     K E   V+ LL+    + +M  A
Sbjct: 527 FKLYHEDPVPDNIKYDALMLC-CSKAEFKSVVALLKGFCMKGLMKEA 572



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  + N VT+  +IDG CK+GF+D A     +M+   I P+VV YN+LI+G+C   
Sbjct: 320 RERGL--RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 377

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A  L  EM  + ++ DVVT++ I+   CK   +D A +L   M++ GV PDA    
Sbjct: 378 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA---- 433

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             + Y  LI GLC+  +L +A EL +++ + G+ P+  TY   I   C +  ++KA  L 
Sbjct: 434 --ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLH 491

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +M  KGV P+ V ++ L+    +   T +   LL  +   + +P
Sbjct: 492 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVP 536



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 8/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN ++  L  +  +  A+     M    + PNV TYN L+   C      EA  +
Sbjct: 116 PSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGC 132
             +M   G   + VT+N ++   C+  ++D A R++ LM + G  +P      N+V +  
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKP------NLVTFNS 228

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK G+++ AR++   + R GL P+VV+YN  +   C    + ++  +F +M  +G
Sbjct: 229 MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 288

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V FT+L+ +  +     + + L+  M +R +       + ++D   K
Sbjct: 289 LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 340



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 52/172 (30%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN----------- 55
           + GV  +P+  TY T+IDG CKEG V+KA  L  +M  + + P+VVTY+           
Sbjct: 461 QLGV--QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSAR 518

Query: 56  ---------------------------------------SLIHGFCYANDGNEAEYLFIE 76
                                                  +L+ GFC      EA+ ++  
Sbjct: 519 TKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQS 578

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           M+DR  + D   +++++   C+   + +A      M++ G  P++   I++V
Sbjct: 579 MLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 630


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++ G    G  +K   LF +M+   + PN+ TYN LI  +C   +   A  L
Sbjct: 71  PNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSL 130

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RG+  +VV++N ++  LC++ K+ +A +LLD+M   G RP      +I+ +  L
Sbjct: 131 FDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRP------SIITFNLL 184

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K GK+ NA      +  AG  P+ VTYN+ I   C    M +A+    DM+ +G+
Sbjct: 185 VDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGL 244

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            P  V +T L+ SF R+N   K  E+L  M+K  +   A    ++V  L
Sbjct: 245 EPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRAL 293



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 6/238 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T+N ++DG  K G +  A   F QMK     P+ VTYN LI GFC A D   A  
Sbjct: 175 RPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANR 234

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +M +RGL+   VT+ +++D   +   M +A  +L  M + G+  DA        YG 
Sbjct: 235 ALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAH------TYGV 288

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  LC  G +K+AR+L QS+   G+ P+ V Y++ I+    +    KA  L ++M  KG
Sbjct: 289 LVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
           + PN   +   +    + ++  +   LL  M +  +    SI   ++D   +   S N
Sbjct: 349 LIPNSASYGLTIRVLCKDDKCQEAEALLDDMVRAGLQTSESICQALLDAKARLRGSAN 406



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 125/270 (46%), Gaps = 31/270 (11%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  GV  +PN  TYN +I   C+ G  ++A+ LF +M    I  NVV+YN+LI G C   
Sbjct: 100 RRGGV--EPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHG 157

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---- 121
              +A  L   M   G +  ++TFN+++D   K  KM  A    + M   G +P A    
Sbjct: 158 KLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYN 217

Query: 122 -----FC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                FC                    E   V Y  LID   +   +  A E+   + +A
Sbjct: 218 MLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKA 277

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL  +  TY + + ALC +  M  A  LF  M  KGV P+ VI+  ++  + R+  + K 
Sbjct: 278 GLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKA 337

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++L+  M ++ ++P ++   + + +L K++
Sbjct: 338 LKLIMEMRQKGLIPNSASYGLTIRVLCKDD 367



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           T    +  LC  G V  A  +  +  K  +   +V    +L++G C   D  EA  +F E
Sbjct: 4   TTAAAVRRLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDE 63

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   GL  + VT+  +M     + + ++   L + M +GGV P      N+  Y CLI  
Sbjct: 64  MPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEP------NLYTYNCLIGE 117

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            C+ G+ + AR L   +   G++ NVV+YN  I  LC   ++  A  L   M  +G  P+
Sbjct: 118 WCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPS 177

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            + F  L+  + +  + S  +     M      P A   ++++
Sbjct: 178 IITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 15/212 (7%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS-----DVVTFNVIMDELCKNRKMDEATR 107
           T  + +   C A D   A    + M+ RG +S     DV     +++  CK   + EA R
Sbjct: 4   TTAAAVRRLCAAGDVRSA----LAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARR 59

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           + D M   G+ P      N V Y  L+ G    G+ +    L + + R G+ PN+ TYN 
Sbjct: 60  VFDEMPLLGLAP------NEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNC 113

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I   C   + ++A  LF +M V+G+  N V + TL+    R  +     +LL  M    
Sbjct: 114 LIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEG 173

Query: 228 VMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
             P     +++VD   K     N++P FN+ K
Sbjct: 174 TRPSIITFNLLVDGYGKAGKMSNALPFFNQMK 205


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 132/227 (58%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VT+N++++GLCK G ++ A+++F +M  E + P+VV+YN+L+ G+C     +E+  
Sbjct: 78  KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLA 137

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  RGL  DVVTF  ++   CK   +++A  L+  M + G+R      +N V +  
Sbjct: 138 VFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLR------MNEVTFTA 191

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L +A    + + + G+ P+VV YN  I+  C   +MD A +L  +ME K 
Sbjct: 192 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 251

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           V P+ V ++T++  + +        +L + M K+ V+P A   S ++
Sbjct: 252 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 298



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 138/261 (52%), Gaps = 29/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT++ G CK G + ++  +F +M    + P+VVT+ SLIH  C A +  +A  L
Sbjct: 114 PDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVAL 173

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M +RGL+ + VTF  ++D  CK   +D+A   ++ M + G++P   C          
Sbjct: 174 VAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCK 233

Query: 124 -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                              + ++V Y  +I G CK+G L +A +L+Q + + G++P+ +T
Sbjct: 234 LGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 293

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+  I  LC +++++ A +LF +M   GV P+   +TTL+    ++    K + L   M 
Sbjct: 294 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 353

Query: 225 KRNVMPYASILSIIVDLLVKN 245
           ++ V+P     S++++ L K+
Sbjct: 354 RKGVLPDVVTYSVLINGLSKS 374



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 130/227 (57%), Gaps = 9/227 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G+  +P+ V YN +I+G CK G +D A+EL  +M+ + + P+VVTY+++I G+C   
Sbjct: 213 RKCGI--QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVG 270

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + + A  L  +M+ +G+  D +T++ ++  LC+ +++++A  L + M+Q GV+PD F   
Sbjct: 271 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF--- 327

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y  LIDG CK G ++ A  L   + R G++P+VVTY++ I+ L    +  +AH L 
Sbjct: 328 ---TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL 384

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             +  +   P+ + +  LM     K E   V+ LL+    + +M  A
Sbjct: 385 FKLYHEDPVPDNIKYDALMLC-CSKAEFKSVVALLKGFCMKGLMKEA 430



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 118/218 (54%), Gaps = 7/218 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN ++  LC  G +++A  +   M+     PN VTYN+L+  FC A + + AE +
Sbjct: 8   PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 67

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              M + G  + ++VTFN +++ LCK  +M+ A ++ D M++ G+ PD      +V+Y  
Sbjct: 68  VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPD------VVSYNT 121

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G CK+G L  +  +   +T+ GL+P+VVT+   IHA C    +++A  L   M  +G
Sbjct: 122 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 181

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +  N V FT L+  F +K      +  +  M K  + P
Sbjct: 182 LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQP 219



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  + N VT+  +IDG CK+GF+D A     +M+   I P+VV YN+LI+G+C   
Sbjct: 178 RERGL--RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 235

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A  L  EM  + ++ DVVT++ I+   CK   +D A +L   M++ GV PDA    
Sbjct: 236 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA---- 291

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             + Y  LI GLC+  +L +A EL +++ + G+ P+  TY   I   C +  ++KA  L 
Sbjct: 292 --ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLH 349

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +M  KGV P+ V ++ L+    +   T +   LL  +   + +P
Sbjct: 350 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVP 394



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M    + PNV TYN L+   C      EA  +  +M   G   + VT+N ++   C+  +
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 102 MDEATRLLDLMIQ-GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           +D A R++ LM + G  +P      N+V +  +++GLCK G+++ AR++   + R GL P
Sbjct: 61  LDGAERVVSLMREEGNAKP------NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAP 114

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +VV+YN  +   C    + ++  +F +M  +G+ P+ V FT+L+ +  +     + + L+
Sbjct: 115 DVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 174

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
             M +R +       + ++D   K
Sbjct: 175 AQMRERGLRMNEVTFTALIDGFCK 198



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 50/166 (30%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN----------------- 55
           +P+  TY T+IDG CKEG V+KA  L  +M  + + P+VVTY+                 
Sbjct: 323 QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHR 382

Query: 56  ---------------------------------SLIHGFCYANDGNEAEYLFIEMMDRGL 82
                                            +L+ GFC      EA+ ++  M+DR  
Sbjct: 383 LLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNW 442

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           + D   +++++   C+   + +A      M++ G  P++   I++V
Sbjct: 443 KLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 488


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 9/245 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  G  C P+ V Y++II   CK G + +A++   +M+ +  +P+VVTYN++I G C   
Sbjct: 344 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 403

Query: 66  DGNEAEYLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              EA+ +  +M + G +  DVVT++ +++ LCK+  + EA +LLD M + G  PD    
Sbjct: 404 KIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPD---- 459

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             +V Y  +IDGLCK G+L+ A  L Q + RAG  PNVVTY   I  LC   ++D+A  +
Sbjct: 460 --VVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERV 517

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD--KRNVMPYASILSIIVDLL 242
             +M   G  PN V + T++          +  +L++ M   +    P A+    IV+ L
Sbjct: 518 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNAL 577

Query: 243 VKNEI 247
           + +++
Sbjct: 578 MSSDL 582



 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 142/253 (56%), Gaps = 9/253 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G  C PN VTYN ++D LCK   V  A+++  +M +    PNV+T+NSL+ GFC   
Sbjct: 206 RERG--CPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRG 263

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + ++A  L   M+ +G++ +VVT++ ++D LCK++K  EA  +L+ M   GV PDAF   
Sbjct: 264 NVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAF--- 320

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y  LI GLCK  K++ A ++ + +  +G  P+VV Y+  IHA C   ++ +A    
Sbjct: 321 ---TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTL 377

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASILSIIVDLLVK 244
            +M  +  +P+ V + T++    +  + ++   +L  M +  +V+P     S +++ L K
Sbjct: 378 QEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCK 437

Query: 245 NEISLNSIPQFNR 257
           +++ + +    +R
Sbjct: 438 SDMLVEAQKLLDR 450



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 128/233 (54%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +I    +   +++A +L  +M++    PN+VTYN L+   C  +    A+
Sbjct: 175 CDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQ 234

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M++ G   +V+TFN ++D  CK   +D+A +LL +M+  G+RP      N+V Y 
Sbjct: 235 DVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRP------NVVTYS 288

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK  K   A+E+ + +   G+ P+  TY+  IH LC  +++++A  +   M   
Sbjct: 289 ALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS 348

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V++++++ +F +  +  +  + L+ M K+   P     + ++D L K
Sbjct: 349 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 401



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 127/271 (46%), Gaps = 38/271 (14%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI------------------- 47
           E    C+P+  +YN +I G C  G +  A EL  +MK                       
Sbjct: 103 ELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGD 162

Query: 48  -------------NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
                        +PNVVTY +LI  F  A    EA  L  EM +RG   ++VT+NV++D
Sbjct: 163 LDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVD 222

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
            LCK   +  A  ++  MI+GG  P      N++ +  L+DG CK G + +AR+L   + 
Sbjct: 223 ALCKLSMVGAAQDVVKKMIEGGFAP------NVMTFNSLVDGFCKRGNVDDARKLLGIMV 276

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
             G+ PNVVTY+  I  LC  ++  +A ++  +M+ +GV P+   ++ L+    + ++  
Sbjct: 277 AKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIE 336

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  ++LR M      P   + S I+    K+
Sbjct: 337 EAEQMLRRMAGSGCTPDVVVYSSIIHAFCKS 367



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+T+I+GLCK   + +A++L  +M     NP+VVTY ++I G C      EAEYL
Sbjct: 423 PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL 482

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G   +VVT+  ++  LCK RK+DEA R+++ M   G      C  N+V Y  +
Sbjct: 483 LQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG------CPPNLVTYNTM 536

Query: 134 IDGLCKIGKLKNARELSQSLT--RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           ++GLC  G++K A++L Q +   RA   P+  TY   ++AL + + + +A  L   M+
Sbjct: 537 VNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMK 594



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 38/261 (14%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++N+++  L +     +A +LF      +  P+V +YN +I GFC A D + A  L  EM
Sbjct: 79  SWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138

Query: 78  MDRGLQSD--------------------------------VVTFNVIMDELCKNRKMDEA 105
              G   D                                VVT+  ++    + +K++EA
Sbjct: 139 KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEA 198

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
            +LL+ M + G      C  N+V Y  L+D LCK+  +  A+++ + +   G  PNV+T+
Sbjct: 199 MKLLEEMRERG------CPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTF 252

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  +   C    +D A  L   M  KG+ PN V ++ L+    +  +  +  E+L  M  
Sbjct: 253 NSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKT 312

Query: 226 RNVMPYASILSIIVDLLVKNE 246
           R V P A   S ++  L K +
Sbjct: 313 RGVTPDAFTYSALIHGLCKAD 333



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY TIIDGLCK G +++A+ L   MK     PNVVTY +LI G C A   +EAE
Sbjct: 456 CNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAE 515

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM + G   ++VT+N +++ LC + ++ EA +L+  M  G     A C  +   Y 
Sbjct: 516 RVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDG----RAECSPDAATYR 571

Query: 132 CLIDGLCKIGKLKNARELSQSL 153
            +++ L     ++ A +L + +
Sbjct: 572 TIVNALMSSDLVQEAEQLLEQM 593


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY T+I G C  G +  A  L  +M  +NINPNV TY  LI   C      EA+ L
Sbjct: 225 PNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNL 284

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG  +DVVT+  ++D  CKN+ +D+AT L   M + G++P+ +       Y  L
Sbjct: 285 LAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKY------TYTAL 338

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+LK+A++L Q L   G   +V TYN+ I  LC +  +D+A  +   ME  G 
Sbjct: 339 IDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGC 398

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
            PN V F  ++ S  +K+E  K  +LL  M  + ++ + +   I
Sbjct: 399 IPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGLLRFRNFHEI 442



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V +  I+  L K      A  L  QM+ + I PN+VT N LI+ FC+    + +  +
Sbjct: 50  PPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSV 109

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  G Q + +T   +M  LC   ++ ++    D ++  G       ++N V+YG L
Sbjct: 110 LGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGF------QMNQVSYGTL 163

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCKIG+ + A +  + +  +    NVV YN  I  LC D+ +++A+D + +M  +G+
Sbjct: 164 LNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGI 223

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN + +TTL+  F    + +    LL  M  +N+ P     +I++D L K
Sbjct: 224 FPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCK 274



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNT+T  T++ GLC +G V K+     ++  +    N V+Y +L++G C   +   A  
Sbjct: 119 QPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIK 178

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               + D     +VV +N I+D LCK++ ++EA      M   G+ P      N++ Y  
Sbjct: 179 FLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFP------NVITYTT 232

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C  G+L  A  L   +    + PNV TY I I ALC + ++ +A +L  +M  +G
Sbjct: 233 LIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRG 292

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              + V +T+L+  F +     K   L   M +  + P     + ++D L K 
Sbjct: 293 QPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKG 345



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT N +I+  C  G +  +  +  ++      PN +T  +L+ G C   +  ++ +
Sbjct: 84  EPNLVTLNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVH 143

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +++ +G Q + V++  +++ LCK  +   A + L ++       D+   +N+V Y  
Sbjct: 144 FHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMI------EDSSTGLNVVMYNT 197

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK   +  A +    +   G+ PNV+TY   I   C   Q+  A  L  +M +K 
Sbjct: 198 IIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKN 257

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           + PN   +  L+ +  ++ +  +   LL  M  R    +V+ Y S+L
Sbjct: 258 INPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLL 304



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E+G+  +PN  TY  +IDGLCK G +  A++LF  +  +    +V TYN +I G C   
Sbjct: 324 KEWGI--QPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEG 381

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG-VRPDAFCE 124
             +EA  +  +M D G   +VVTF +I+  L K  + D+A +LL  MI  G +R   F E
Sbjct: 382 MLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGLLRFRNFHE 441

Query: 125 I 125
           I
Sbjct: 442 I 442



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 6/162 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           +V F  I+  L K +    A  L   M   G+ P      N+V    LI+  C +G++  
Sbjct: 52  IVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEP------NLVTLNILINCFCHLGQMSF 105

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           +  +   + + G  PN +T    +  LC   ++ K+      +  +G   N V + TL+ 
Sbjct: 106 SFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLN 165

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              +  ET   I+ LR ++  +      + + I+D L K+++
Sbjct: 166 GLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKL 207


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 9/245 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  G  C P+ V Y++II   CK G + +A++   +M+ +  +P+VVTYN++I G C   
Sbjct: 222 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 281

Query: 66  DGNEAEYLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              EA+ +  +M + G +  DVVT++ +++ LCK+  + EA +LLD M + G  PD    
Sbjct: 282 KIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPD---- 337

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             +V Y  +IDGLCK G+L+ A  L Q + RAG  PNVVTY   I  LC   ++D+A  +
Sbjct: 338 --VVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERV 395

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD--KRNVMPYASILSIIVDLL 242
             +M   G  PN V + T++          +  +L++ M   +    P A+    IV+ L
Sbjct: 396 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNAL 455

Query: 243 VKNEI 247
           + +++
Sbjct: 456 MSSDL 460



 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 142/253 (56%), Gaps = 9/253 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G  C PN VTYN ++D LCK   V  A+++  +M +    PNV+T+NSL+ GFC   
Sbjct: 84  RERG--CPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRG 141

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + ++A  L   M+ +G++ +VVT++ ++D LCK++K  EA  +L+ M   GV PDAF   
Sbjct: 142 NVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAF--- 198

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y  LI GLCK  K++ A ++ + +  +G  P+VV Y+  IHA C   ++ +A    
Sbjct: 199 ---TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTL 255

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASILSIIVDLLVK 244
            +M  +  +P+ V + T++    +  + ++   +L  M +  +V+P     S +++ L K
Sbjct: 256 QEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCK 315

Query: 245 NEISLNSIPQFNR 257
           +++ + +    +R
Sbjct: 316 SDMLVEAQKLLDR 328



 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 129/233 (55%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +I    +   +++A +L  +M++    PN+VTYN L+   C  +    A+
Sbjct: 53  CDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQ 112

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M++ G   +V+TFN ++D  CK   +D+A +LL +M+  G+RP      N+V Y 
Sbjct: 113 DVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRP------NVVTYS 166

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK  K   A+E+ + +  +G+ P+  TY+  IH LC  +++++A  +   M   
Sbjct: 167 ALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS 226

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V++++++ +F +  +  +  + L+ M K+   P     + ++D L K
Sbjct: 227 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 279



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 9/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+  II  +   G +D A +    ++    +PNVVTY +LI  F  A    EA  L
Sbjct: 23  PDAFTHTPIITAMANAGDLDGAMD---HLRSMGCDPNVVTYTALIAAFARAKKLEEAMKL 79

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +RG   ++VT+NV++D LCK   +  A  ++  MI+GG  P      N++ +  L
Sbjct: 80  LEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAP------NVMTFNSL 133

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK G + +AR+L   +   G+ PNVVTY+  I  LC  ++  +A ++  +M+  GV
Sbjct: 134 VDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGV 193

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   ++ L+    + ++  +  ++LR M      P   + S I+    K+
Sbjct: 194 TPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKS 245



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 8/177 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+T+I+GLCK   + +A++L  +M     NP+VVTY ++I G C      EAEYL
Sbjct: 301 PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL 360

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G   +VVT+  ++  LCK RK+DEA R+++ M   G  P      N+V Y  +
Sbjct: 361 LQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPP------NLVTYNTM 414

Query: 134 IDGLCKIGKLKNARELSQSLT--RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           ++GLC  G++K A++L Q +   RA   P+  TY   ++AL + + + +A  L   M
Sbjct: 415 VNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY TIIDGLCK G +++A+ L   MK     PNVVTY +LI G C A   +EAE
Sbjct: 334 CNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAE 393

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM + G   ++VT+N +++ LC + ++ EA +L+  M  G     A C  +   Y 
Sbjct: 394 RVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDG----RAECSPDAATYR 449

Query: 132 CLIDGLCKIGKLKNARELSQSL 153
            +++ L     ++ A +L + +
Sbjct: 450 TIVNALMSSDLVQEAEQLLEQM 471



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 9/190 (4%)

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           C A D + A  L  EM   G   D  T   I+  +     +D A   L  M         
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM--------- 51

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
            C+ N+V Y  LI    +  KL+ A +L + +   G  PN+VTYN+ + ALC    +  A
Sbjct: 52  GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 111

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
            D+   M   G APN + F +L+  F ++       +LL  M  + + P     S ++D 
Sbjct: 112 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171

Query: 242 LVKNEISLNS 251
           L K++  L +
Sbjct: 172 LCKSQKFLEA 181


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 132/227 (58%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VT+N++++GLCK G ++ A+++F +M  E + P+VV+YN+L+ G+C     +E+  
Sbjct: 220 KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLA 279

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  RGL  DVVTF  ++   CK   +++A  L+  M + G+R      +N V +  
Sbjct: 280 VFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLR------MNEVTFTA 333

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L +A    + + + G+ P+VV YN  I+  C   +MD A +L  +ME K 
Sbjct: 334 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 393

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           V P+ V ++T++  + +        +L + M K+ V+P A   S ++
Sbjct: 394 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 138/261 (52%), Gaps = 29/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT++ G CK G + ++  +F +M    + P+VVT+ SLIH  C A +  +A  L
Sbjct: 256 PDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVAL 315

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M +RGL+ + VTF  ++D  CK   +D+A   ++ M + G++P   C          
Sbjct: 316 VAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCK 375

Query: 124 -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                              + ++V Y  +I G CK+G L +A +L+Q + + G++P+ +T
Sbjct: 376 LGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 435

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+  I  LC +++++ A +LF +M   GV P+   +TTL+    ++    K + L   M 
Sbjct: 436 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495

Query: 225 KRNVMPYASILSIIVDLLVKN 245
           ++ V+P     S++++ L K+
Sbjct: 496 RKGVLPDVVTYSVLINGLSKS 516



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 126/220 (57%), Gaps = 7/220 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YN +I+G CK G +D A+EL  +M+ + + P+VVTY+++I G+C   + + A  
Sbjct: 360 QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQ 419

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ +G+  D +T++ ++  LC+ +++++A  L + M+Q GV+PD F       Y  
Sbjct: 420 LNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF------TYTT 473

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G ++ A  L   + R G++P+VVTY++ I+ L    +  +AH L   +  + 
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             P+ + +  LM     K E   V+ LL+    + +M  A
Sbjct: 534 PVPDNIKYDALMLC-CSKAEFKSVVALLKGFCMKGLMKEA 572



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  + N VT+  +IDG CK+GF+D A     +M+   I P+VV YN+LI+G+C   
Sbjct: 320 RERGL--RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 377

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A  L  EM  + ++ DVVT++ I+   CK   +D A +L   M++ GV PDA    
Sbjct: 378 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA---- 433

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             + Y  LI GLC+  +L +A EL +++ + G+ P+  TY   I   C +  ++KA  L 
Sbjct: 434 --ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLH 491

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +M  KGV P+ V ++ L+    +   T +   LL  +   + +P
Sbjct: 492 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVP 536



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 8/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN ++  L  +  +  A+     M    + PNV TYN L+   C      EA  +
Sbjct: 116 PSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGC 132
             +M   G   + VT+N ++   C+  ++D A R++ LM + G  +P      N+V +  
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKP------NLVTFNS 228

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK G+++ AR++   + R GL P+VV+YN  +   C    + ++  +F +M  +G
Sbjct: 229 MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 288

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V FT+L+ +  +     + + L+  M +R +       + ++D   K
Sbjct: 289 LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 340



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 97/234 (41%), Gaps = 56/234 (23%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY+TII G CK G +D A +L  +M  + + P+ +TY+SLI G C     N+A  
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 454

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M+  G+Q D  T+  ++D  CK   +++A  L D MI+ GV PD      +V Y  
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD------VVTYSV 508

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVV----------------------------- 163
           LI+GL K  + K A  L   L     +P+ +                             
Sbjct: 509 LINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGL 568

Query: 164 ---------------------TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
                                 Y+I IH  C    + KA      M   G +PN
Sbjct: 569 MKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 44/195 (22%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY+++I GLC+E  ++ A ELF  M    + P+  TY +LI G C   +  +A  L
Sbjct: 431 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 490

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------- 120
             EM+ +G+  DVVT++V+++ L K+ +  EA RLL  +      PD             
Sbjct: 491 HDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSK 550

Query: 121 -----------AFC--------------------EINIVAYGCLIDGLCKIGKLKNAREL 149
                       FC                    +++   Y  LI G C+ G ++ A   
Sbjct: 551 AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSF 610

Query: 150 SQSLTRAGLMPNVVT 164
            + + R+G  PN  +
Sbjct: 611 HKQMLRSGFSPNSTS 625



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 50/166 (30%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN----------------- 55
           +P+  TY T+IDG CKEG V+KA  L  +M  + + P+VVTY+                 
Sbjct: 465 QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHR 524

Query: 56  ---------------------------------SLIHGFCYANDGNEAEYLFIEMMDRGL 82
                                            +L+ GFC      EA+ ++  M+DR  
Sbjct: 525 LLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNW 584

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           + D   +++++   C+   + +A      M++ G  P++   I++V
Sbjct: 585 KLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 630


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++ G    G  +K   LF +M+   + PN+ TYN LI  +C   +   A  L
Sbjct: 71  PNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSL 130

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RG+  +VV++N ++  LC++ K+ +A +LLD+M   G RP      +I+ +  L
Sbjct: 131 FDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRP------SIITFNLL 184

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K GK+ NA      +  AG  P+ VTYN+ I   C    M +A+    DM+ +G+
Sbjct: 185 VDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGL 244

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            P  V +T L+ SF R+N   K  E+L  M+K  +   A    ++V  L
Sbjct: 245 EPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRAL 293



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 108/212 (50%), Gaps = 6/212 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T+N ++DG  K G +  A   F QMK     P+ VTYN LI GFC A D   A  
Sbjct: 175 RPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANR 234

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +M +RGL+   VT+ +++D   +   M +A  +L  M + G+  DA        YG 
Sbjct: 235 ALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAH------TYGV 288

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  LC  G +K+AR+L QS+   G+ P+ V Y++ I+    +    KA  L ++M  KG
Sbjct: 289 LVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           + PN   +   +    + ++  +   LL  M+
Sbjct: 349 LIPNSASYGLTIRVLCKDDKCQEAEALLDDME 380



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 127/282 (45%), Gaps = 38/282 (13%)

Query: 3   NGNREFGVV---------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT 53
           +G RE G            +PN  TYN +I   C+ G  ++A+ LF +M    I  NVV+
Sbjct: 86  HGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVS 145

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           YN+LI G C      +A  L   M   G +  ++TFN+++D   K  KM  A    + M 
Sbjct: 146 YNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMK 205

Query: 114 QGGVRPDA---------FC--------------------EINIVAYGCLIDGLCKIGKLK 144
             G +P A         FC                    E   V Y  LID   +   + 
Sbjct: 206 AAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMG 265

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            A E+   + +AGL  +  TY + + ALC +  M  A  LF  M  KGV P+ VI+  ++
Sbjct: 266 KAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMI 325

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             + R+  + K ++L+  M ++ ++P ++   + + +L K++
Sbjct: 326 YGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDD 367



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           T    +  LC  G V  A  +  +  K  +   +V    +L++G C   D  EA  +F E
Sbjct: 4   TTAAAVRRLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDE 63

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   GL  + VT+  +M     + + ++   L + M +GGV P      N+  Y CLI  
Sbjct: 64  MPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEP------NLYTYNCLIGE 117

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            C+ G+ + AR L   +   G++ NVV+YN  I  LC   ++  A  L   M  +G  P+
Sbjct: 118 WCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPS 177

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            + F  L+  + +  + S  +     M      P A   ++++
Sbjct: 178 IITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLI 220



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 15/212 (7%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS-----DVVTFNVIMDELCKNRKMDEATR 107
           T  + +   C A D   A    + M+ RG +S     DV     +++  CK   + EA R
Sbjct: 4   TTAAAVRRLCAAGDVRSA----LAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARR 59

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           + D M   G+ P      N V Y  L+ G    G+ +    L + + R G+ PN+ TYN 
Sbjct: 60  VFDEMPLLGLAP------NEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNC 113

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I   C   + ++A  LF +M V+G+  N V + TL+    R  +     +LL  M    
Sbjct: 114 LIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEG 173

Query: 228 VMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
             P     +++VD   K     N++P FN+ K
Sbjct: 174 TRPSIITFNLLVDGYGKAGKMSNALPFFNQMK 205


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 133/223 (59%), Gaps = 7/223 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT++  L + G VD+A   F QM +E   P +V++N++I G C A    +A  +
Sbjct: 165 PDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEV 224

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+DR    ++VT++V++D LCK+ ++DEA +LLD M+  G RPD      +VAY  L
Sbjct: 225 FNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPD------LVAYTPL 278

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G+L +A  L + +   G +P+VVTY + I  LC   ++D AH++F ++     
Sbjct: 279 VLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 338

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASIL 235
           +PN V ++ L+  + R +   +  +++R M  R NV+ Y +++
Sbjct: 339 SPNVVTYSALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMI 381



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 7/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           +P+ V+Y T+I+GLCK G VD A +LF +M       PN  TYN+L+ G C  +  + A 
Sbjct: 93  QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAAR 152

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  E   R    DVVT+N +M  L +  ++DEA      M + G  P       +V++ 
Sbjct: 153 AVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVP------TLVSFN 206

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLC+  +L +A E+   +      PN+VTY++ I  LC  +Q+D+A  L   M  +
Sbjct: 207 AIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE 266

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V +T L+  F         + LLR M  +  +P     ++++D L K
Sbjct: 267 GCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 319



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 16/238 (6%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           ++VTYN +I G C    +D A  L  +M  E +  N  T + ++ G C      +A    
Sbjct: 24  SSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQA---- 79

Query: 75  IEMMDRGL-----QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIV 128
           +E  D  L     Q DVV++  +++ LCK  ++D A  L   M+  GG RP+AF      
Sbjct: 80  LEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAF------ 133

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DGLCK  +L  AR +     +    P+VVTYN  + AL    ++D+A   F  M
Sbjct: 134 TYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQM 193

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +G  P  V F  ++    R    +  +E+   M  R+  P     S+++D L K++
Sbjct: 194 TEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSD 251



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 11/222 (4%)

Query: 40  LQMKDEN---INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           LQ+  EN   +  + VTYN LI GFC A+D + A  L  EM   G+Q +  T ++I+  L
Sbjct: 11  LQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGL 70

Query: 97  CKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           C+  ++ +A    D  ++    +PD      +V+Y  LI+GLCK+G++  A +L + +  
Sbjct: 71  CRCGRVAQALEHFDASLELAHAQPD------VVSYTTLINGLCKLGRVDAAFDLFRKMVA 124

Query: 156 AG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           AG   PN  TYN  +  LC  +++D A  +  +   +  AP+ V + TLM +  +     
Sbjct: 125 AGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVD 184

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           + +     M +   +P     + I+  L +     +++  FN
Sbjct: 185 EALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFN 226



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 3/110 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY  +ID LCK G VD A E+F ++     +PNVVTY++LI G+C A+  +E  
Sbjct: 303 CIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG 362

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            +  EM  R    +VVT+N ++  L    + +EA  +   M + G  PDA
Sbjct: 363 KVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDA 409



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 9/161 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ V Y  ++ G    G +D A  L  +M  +   P+VVTY  +I   C     ++A 
Sbjct: 268 CRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAH 327

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F E++      +VVT++ ++   C+  ++DE  +++  M          C  N+V Y 
Sbjct: 328 EIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA---------CRPNVVTYN 378

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            +I GL  + + + A  + + ++  G +P+  TY     AL
Sbjct: 379 TMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 419



 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL 57
           + C+PN VTYNT+I GL      ++A  +F +M +    P+  TY  L
Sbjct: 368 MACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 415


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 87/245 (35%), Positives = 130/245 (53%), Gaps = 8/245 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N   E G+  KP+ V Y TIID LCK G VD A  LF QM++  I P+VV Y SL++G
Sbjct: 163 MVNQMVEMGI--KPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNG 220

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C +    +A+ L   MM R ++ DV+TFN ++D   K  K+ +A  L + MIQ  + P 
Sbjct: 221 LCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAP- 279

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                NI  Y  LI+GLC  G+L  AR++   +   G  P+VV Y   I+  C  ++++ 
Sbjct: 280 -----NIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVED 334

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  +F +M  KG+  N + +TTL+  F    + +   E+   M  R V P     ++++ 
Sbjct: 335 AMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLH 394

Query: 241 LLVKN 245
            L  N
Sbjct: 395 CLCYN 399



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 44/253 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY ++I+GLC EG +D+A+++F  M+ +   P+VV Y SLI+GFC      +A  +
Sbjct: 279 PNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKI 338

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  +GL  + +T+  ++       K + A  +   M+  GV P      NI  Y  L
Sbjct: 339 FYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPP------NIRTYNVL 392

Query: 134 IDGLCKIGKLKNARELSQSLTRA---GLMPNVVTYNITIHALCNDEQMDKAHDLFLDME- 189
           +  LC  GK+  A  + + + +    G+ PN+ TYN+ +H LC + +++KA  +F DM+ 
Sbjct: 393 LHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQK 452

Query: 190 ----------------------------------VKGVAPNCVIFTTLMPSFIRKNETSK 215
                                              KGV PN V +TT++    R+    +
Sbjct: 453 RDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLE 512

Query: 216 VIELLRSMDKRNV 228
              L R M +  V
Sbjct: 513 AHVLFRKMKEDGV 525



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 33/252 (13%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T N +++  C+      A     ++      P++ T+ SLI+GFC  N   EA  +  +M
Sbjct: 108 TCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQM 167

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC----- 123
           ++ G++ DVV +  I+D LCKN  +D A  L + M   G+RPD           C     
Sbjct: 168 VEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRW 227

Query: 124 ---------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
                          + +++ +  LID   K GKL +A+EL   + +  + PN+ TY   
Sbjct: 228 RDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSL 287

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-- 226
           I+ LC + ++D+A  +F  ME KG  P+ V +T+L+  F +  +    +++   M ++  
Sbjct: 288 INGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGL 347

Query: 227 --NVMPYASILS 236
             N + Y +++ 
Sbjct: 348 TGNTITYTTLIQ 359



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 9/183 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NT+TY T+I G    G  + A+E+F  M    + PN+ TYN L+H  CY    N+A  +F
Sbjct: 350 NTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIF 409

Query: 75  IEMMDR---GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +M  R   G+  ++ T+NV++  LC N K+++A     LM+ G ++     +I I+ Y 
Sbjct: 410 EDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKA-----LMVFGDMQKRDM-DIGIITYT 463

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+CK GK+K+A  L  SL   G+ PNVVTY   I  L  +  M +AH LF  M+  
Sbjct: 464 IIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKED 523

Query: 192 GVA 194
           GV+
Sbjct: 524 GVS 526



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +  +++ + K    D    L   ++   ++ ++ T N L++ FC ++    A   
Sbjct: 69  PSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSF 128

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++M  G + D+ TF  +++  C   +++EA  +++ M++ G++PD      +V Y  +
Sbjct: 129 LGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPD------VVIYTTI 182

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK G + NA  L   +   G+ P+VV Y   ++ LCN  +   A  L   M  + +
Sbjct: 183 IDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKI 242

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ + F  L+ +F+++ +     EL   M + ++ P
Sbjct: 243 KPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAP 279



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 105/224 (46%), Gaps = 6/224 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           ++A +LF  M +    P+++ +  L++        +    L   +   G+ +D+ T N++
Sbjct: 53  NEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLL 112

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           M+  C++ +   A+  L  +++ G  PD F       +  LI+G C   +++ A  +   
Sbjct: 113 MNCFCQSSQPCLASSFLGKLMKLGFEPDIF------TFTSLINGFCLGNRIEEAMSMVNQ 166

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G+ P+VV Y   I +LC +  +D A  LF  ME  G+ P+ V++T+L+        
Sbjct: 167 MVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGR 226

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
                 LLR M KR + P     + ++D  VK    L++   +N
Sbjct: 227 WRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYN 270



 Score = 44.7 bits (104), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 6/159 (3%)

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           + +EA  L   M++    P      +I+ +  L++ + K+ K      L + L   G+  
Sbjct: 51  QFNEALDLFSHMVESRPLP------SIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSN 104

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++ T N+ ++  C   Q   A      +   G  P+   FT+L+  F   N   + + ++
Sbjct: 105 DLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMV 164

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
             M +  + P   I + I+D L KN    N++  FN+ +
Sbjct: 165 NQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQME 203



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN 48
           KPN VTY T+I GL +EG + +A  LF +MK++ ++
Sbjct: 491 KPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 135/243 (55%), Gaps = 8/243 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV C  N VTYNT+I GLC+E   ++A ++  QMK + INPN++TYN+LI GFC   
Sbjct: 295 RERGVSC--NIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVG 352

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  L  ++  RGL   +VT+N+++   CK      A +++  M + G++P      
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSK---- 408

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             + Y  LID   ++  ++ A +L   +   GL P+V TY++ IH  C   QM++A  LF
Sbjct: 409 --ITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLF 466

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M  K + PN VI+ T++  + ++  + + + L R M+++ + P  +    ++++L K 
Sbjct: 467 KLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKE 526

Query: 246 EIS 248
             S
Sbjct: 527 RKS 529



 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 43/269 (15%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM----------------------- 42
           REFG    PN V Y T+IDG CK G ++KAK+LF +M                       
Sbjct: 190 REFGF--SPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNG 247

Query: 43  ------------KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFN 90
                       +++ + PN+ TYN +++  C      +A  LF EM +RG+  ++VT+N
Sbjct: 248 IKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYN 307

Query: 91  VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150
            ++  LC+  K +EA +++D M   G+ P      N++ Y  LIDG C +GKL  A  L 
Sbjct: 308 TLIGGLCREMKANEANKVMDQMKSDGINP------NLITYNTLIDGFCGVGKLGKALSLC 361

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           + L   GL P++VTYNI +   C       A  +  +ME +G+ P+ + +T L+ +F R 
Sbjct: 362 RDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARM 421

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIV 239
           +   K I+L   M++  + P     S+++
Sbjct: 422 DNMEKAIQLRSPMEELGLTPDVHTYSVLI 450



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 129/262 (49%), Gaps = 41/262 (15%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++  +I G C+ G ++K+ +L +++++   +PNVV Y +LI G C   +  +A+ LF EM
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEM 224

Query: 78  MDRGL------------------------------QSDVV-----TFNVIMDELCKNRKM 102
              GL                              Q D V     T+N +M++ CK+ + 
Sbjct: 225 GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRT 284

Query: 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
            +A +L D M + GV        NIV Y  LI GLC+  K   A ++   +   G+ PN+
Sbjct: 285 KDAFKLFDEMRERGV------SCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNL 338

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           +TYN  I   C   ++ KA  L  D++ +G++P+ V +  L+  F +K +TS   ++++ 
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE 398

Query: 223 MDKRNVMPYASILSIIVDLLVK 244
           M++R + P     +I++D   +
Sbjct: 399 MEERGIKPSKITYTILIDTFAR 420



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 61/107 (57%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I G C +G +++A  LF  M  + + PN V YN+++ G+C       A  L
Sbjct: 441 PDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRL 500

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           F EM ++ L  +V ++  +++ LCK RK  EA  L++ MI  G+ P 
Sbjct: 501 FREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPS 547



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 90/209 (43%), Gaps = 7/209 (3%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           +I G  +  F   +  L    + E        Y  +I+ +  +   + +   F EM+D+G
Sbjct: 65  VISGKIQSQFFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSLDSSISYFNEMVDKG 124

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
                  FN ++  +  +   ++  R  +   +  ++ D    +++ ++G +I G C+ G
Sbjct: 125 FVPGSNCFNNLLTFVVGSSSFNQWWRFFN---ESKIKVD----LDVYSFGIVIKGCCEAG 177

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           +++ + +L   L   G  PNVV Y   I   C   +++KA DLF +M   G+  N   +T
Sbjct: 178 EIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYT 237

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            L+    +     +  E+   M +  V P
Sbjct: 238 VLIHGLFKNGIKKQGFEMYEKMQEDGVFP 266



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YNT++ G CKEG   +A  LF +M+++ + PNV +Y  +I   C      EAE 
Sbjct: 475 EPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEG 534

Query: 73  LFIEMMDRGLQSDVVTFNVI 92
           L  +M+D G+       N+I
Sbjct: 535 LVEKMIDTGIDPSDSILNLI 554



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/225 (19%), Positives = 95/225 (42%), Gaps = 22/225 (9%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A+ L LQ+    I     T +SL+H   Y  +   +E            +    + V+++
Sbjct: 58  AQSLLLQVISGKIQSQFFTSSSLLH---YVTESETSE------------TKSRLYEVMIN 102

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
              +++ +D +    + M+  G  P + C  N++ +        +  +  N  ++   L 
Sbjct: 103 AYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIKVDL- 161

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
                 +V ++ I I   C   +++K+ DL +++   G +PN VI+TTL+    ++ E  
Sbjct: 162 ------DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIE 215

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           K  +L   M K  ++      ++++  L KN I       + + +
Sbjct: 216 KAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQ 260


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  150 bits (378), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 133/223 (59%), Gaps = 7/223 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT++  L + G VD+A   F QM +E   P +V++N++I G C A    +A  +
Sbjct: 115 PDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEV 174

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+DR    ++VT++V++D LCK+ ++DEA +LLD M+  G RPD      +VAY  L
Sbjct: 175 FNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPD------LVAYTPL 228

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G+L +A  L + +   G +P+VVTY + I  LC   ++D AH++F ++     
Sbjct: 229 VLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 288

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASIL 235
           +PN V ++ L+  + R +   +  +++R M  R NV+ Y +++
Sbjct: 289 SPNVVTYSALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMI 331



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 7/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           +P+ V+Y T+I+GLCK G VD A +LF +M       PN  TYN+L+ G C  +  + A 
Sbjct: 43  QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAAR 102

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  E   R    DVVT+N +M  L +  ++DEA      M + G  P       +V++ 
Sbjct: 103 AVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVP------TLVSFN 156

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLC+  +L +A E+   +      PN+VTY++ I  LC  +Q+D+A  L   M  +
Sbjct: 157 AIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE 216

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V +T L+  F         + LLR M  +  +P     ++++D L K
Sbjct: 217 GCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 269



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 16/211 (7%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL-----QSDVVTFNVIMDEL 96
           M  E +  N  T + ++ G C      +A    +E  D  L     Q DVV++  +++ L
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQA----LEHFDASLELAHAQPDVVSYTTLINGL 56

Query: 97  CKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           CK  ++D A  L   M+  GG RP+AF       Y  L+DGLCK  +L  AR +     +
Sbjct: 57  CKLGRVDAAFDLFRKMVAAGGCRPNAF------TYNALVDGLCKQDRLDAARAVIAEARK 110

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
               P+VVTYN  + AL    ++D+A   F  M  +G  P  V F  ++    R    + 
Sbjct: 111 RDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLAD 170

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +E+   M  R+  P     S+++D L K++
Sbjct: 171 ALEVFNEMIDRDFHPNLVTYSVVIDGLCKSD 201



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 3/110 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY  +ID LCK G VD A E+F ++     +PNVVTY++LI G+C A+  +E  
Sbjct: 253 CIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG 312

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            +  EM  R    +VVT+N ++  L    + +EA  +   M + G  PDA
Sbjct: 313 KVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDA 359



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 9/161 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ V Y  ++ G    G +D A  L  +M  +   P+VVTY  +I   C     ++A 
Sbjct: 218 CRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAH 277

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F E++      +VVT++ ++   C+  ++DE  +++  M          C  N+V Y 
Sbjct: 278 EIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA---------CRPNVVTYN 328

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            +I GL  + + + A  + + ++  G +P+  TY     AL
Sbjct: 329 TMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 369



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 8/178 (4%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGCLIDGLCK 139
           G+Q +  T ++I+  LC+  ++ +A    D  ++    +PD      +V+Y  LI+GLCK
Sbjct: 5   GMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPD------VVSYTTLINGLCK 58

Query: 140 IGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           +G++  A +L + +  AG   PN  TYN  +  LC  +++D A  +  +   +  AP+ V
Sbjct: 59  LGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVV 118

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
            + TLM +  +     + +     M +   +P     + I+  L +     +++  FN
Sbjct: 119 TYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFN 176



 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL 57
           + C+PN VTYNT+I GL      ++A  +F +M +    P+  TY  L
Sbjct: 318 MACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 365


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 131/240 (54%), Gaps = 8/240 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G   KP+ VTY  +IDG CK G ++KA ++   M+     PNVVTY+SL+HG C A 
Sbjct: 180 REDGAW-KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAG 238

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D ++A  LF  M  +G   +VVT+  ++  LC   K+D A  L+D M          C  
Sbjct: 239 DLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTA------TCCPA 292

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           + V+Y  L+DG C++G+++ A++L + +     +P+ +TY   +   CN  ++++A  L 
Sbjct: 293 DTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLL 352

Query: 186 LDME-VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +M+   G+ P+ V ++ ++  + R     +  E ++ M  RNV P A   S ++D L K
Sbjct: 353 ENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCK 412



 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 130/228 (57%), Gaps = 7/228 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN VTY++++ GLCK G +D+A +LF +M  +   PNVVTY +LIHG C A+  +
Sbjct: 217 GRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVD 276

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  L  EM      +D V++N ++D  C+  +++EA +L   M      PD       +
Sbjct: 277 AARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDR------I 330

Query: 129 AYGCLIDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            Y CL+ G C   +L+ AR L +++ T AG+ P+VVTY+I +      ++  +A +   +
Sbjct: 331 TYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQE 390

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
           M  + VAPN V +++L+    +    +  +E+L+++DK +V+ Y  ++
Sbjct: 391 MIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVI 438



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 114/191 (59%), Gaps = 3/191 (1%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY +++DGLC++G +D+A E+  +MK + + P+  T+++LI G+C A   +EA  L
Sbjct: 79  PDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKL 138

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + E++    + D V+ + ++  LC+ R++ EA  L   M    +R D   + ++V Y  L
Sbjct: 139 YKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEM---EMREDGAWKPDVVTYTAL 195

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L+ A ++   +     +PNVVTY+  +H LC    +D+A DLF  M  KG 
Sbjct: 196 IDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGC 255

Query: 194 APNCVIFTTLM 204
            PN V +TTL+
Sbjct: 256 VPNVVTYTTLI 266



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 133/239 (55%), Gaps = 18/239 (7%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD-ENINPNVVTYNSLIHGFCYA 64
           REF     PN  TYN +++GLCK     KA E+  +M+D +++ P++VTY+++I+GFC  
Sbjct: 2   REF---VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQ 58

Query: 65  NDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
            + + A  +  EM+ R G+  DVVT+  ++D LC++ KMD A  ++  M   GV PD F 
Sbjct: 59  GEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKF- 117

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                 +  LI G C   K+  A +L + +  +    + V+ +  I  LC + ++ +A++
Sbjct: 118 -----TFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYE 172

Query: 184 LFLDMEVK---GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           LF +ME++      P+ V +T L+  F +     K +++L  M+ R    NV+ Y+S+L
Sbjct: 173 LFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLL 231



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 128/270 (47%), Gaps = 34/270 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +TV+YN ++DG C+ G +++AK+LF +M  ++  P+ +TY  L+ GFC A+   EA 
Sbjct: 290 CPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEAR 349

Query: 72  YLFIEM-MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DA 121
           +L   M    G+  DVVT+++++    + ++  EA   +  MI   V P         D 
Sbjct: 350 FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDG 409

Query: 122 FCEI----------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
            C+                 ++V Y  +I+GLC   + + A  L + +    + P+V T+
Sbjct: 410 LCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTF 469

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  I ALC    MD+A  L + M   G+ P  V +TTL+  F R        EL   M +
Sbjct: 470 NSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRR 529

Query: 226 R--------NVMPYASILSIIVDLLVKNEI 247
           +        N++P  +  ++I  L    EI
Sbjct: 530 KAKKSSSAANLVPEQAFSALIRGLCKAREI 559



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 9/221 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T++ +I G C    VD+A +L+ ++   +   + V+ ++LI G C      EA  
Sbjct: 113 EPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYE 172

Query: 73  LFIEM---MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           LF EM    D   + DVVT+  ++D  CK+  +++A ++L      GV     C  N+V 
Sbjct: 173 LFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKML------GVMEGRKCVPNVVT 226

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+ GLCK G L  A +L + +T  G +PNVVTY   IH LC   ++D A  L  +M 
Sbjct: 227 YSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT 286

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
                 + V +  L+  + R     +  +L + M  ++ +P
Sbjct: 287 ATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLP 327



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 21/221 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN-PNVVTYNSLIHGFCYANDGNEAEY 72
           PN VTY+++IDGLCK G V+ A E+      +N++ P+VVTY  +I G C  +   EA  
Sbjct: 398 PNAVTYSSLIDGLCKAGRVNHAMEVL-----KNVDKPDVVTYTIVIEGLCGTDRTEEALT 452

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+++ ++  V TFN ++  LC+   MDEA +LL  M   G+ P       +V Y  
Sbjct: 453 LLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEP------GMVTYTT 506

Query: 133 LIDGLCKIGKLKNARELSQSLTR--------AGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           L++G  + G+++ A EL + + R        A L+P    ++  I  LC   ++DKA  +
Sbjct: 507 LLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQA-FSALIRGLCKAREIDKAMAV 565

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
             ++  +   P       ++   +R   T +  +L+ S+ K
Sbjct: 566 VEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISK 606



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 11/145 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY  +I+GLC     ++A  L  +M ++ + P+V T+NS+I   C   D +EA  
Sbjct: 428 KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWK 487

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV---A 129
           L + M   GL+  +VT+  +++   +  +M+ A  L ++M +   +  +    N+V   A
Sbjct: 488 LLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSS--AANLVPEQA 545

Query: 130 YGCLIDGLCKIGKLKNARELSQSLT 154
           +  LI GLCK      ARE+ +++ 
Sbjct: 546 FSALIRGLCK------AREIDKAMA 564



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKGVAPNCVIFTTLMPSFIRKNET 213
           R  + PN  TYN+ ++ LC      KA+++  +M + K VAP+ V ++T++  F ++ E 
Sbjct: 2   REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEM 61

Query: 214 SKVIELLRSMDKRNVM-PYASILSIIVDLLVKN 245
            +  E+LR M  R+ M P     + +VD L ++
Sbjct: 62  DRACEILREMVTRDGMAPDVVTYTSVVDGLCRD 94



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM----KDENINPNVV---TYNSLIHGFCYAN 65
           +P  VTY T+++G  + G ++ A ELF  M    K  +   N+V    +++LI G C A 
Sbjct: 498 EPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAR 557

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           + ++A  +  E+  R  +        I+D L +  + +EA +L++ + + G+
Sbjct: 558 EIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 145/255 (56%), Gaps = 14/255 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + KPN V Y+TIID LCK   V +A  LF +M  + I+ +VVTY++LI+GFC      
Sbjct: 192 GRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLK 251

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM+ + +  +V T+N+++D LCK  K+ EA  +L +M++  V+PD      ++
Sbjct: 252 EAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPD------VI 305

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG   + ++K A+ +  +++  G+ P+V TY I I+  C ++ +D+A +LF +M
Sbjct: 306 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM 365

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVK 244
             K + P  V +++L+    +      V +L+  M  R    NV+ Y+S    ++D L K
Sbjct: 366 HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSS----LIDGLCK 421

Query: 245 NEISLNSIPQFNRQK 259
           N     +I  FN+ K
Sbjct: 422 NGHLDRAIALFNKMK 436



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 6/199 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I+G CK   VD+A  LF +M  +N+ P +VTY+SLI G C +        L
Sbjct: 337 PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDL 396

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG  ++V+T++ ++D LCKN  +D A  L + M   G+RP+ F       +  L
Sbjct: 397 IDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTF------TFTIL 450

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+LK+A+E+ Q L   G   NV TYN+ I   C    +++A  +   ME  G 
Sbjct: 451 LDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGC 510

Query: 194 APNCVIFTTLMPSFIRKNE 212
            P+ V F  ++ +  +K+E
Sbjct: 511 IPDAVTFEIIIIALFKKDE 529



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 29/262 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN ++D LCKEG V +AK +   M    + P+V+TY++L+ G+    +  +A+++
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
           F  M   G+  DV T+ ++++  CKN+ +DEA  L   M Q  + P         D  C+
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                N++ Y  LIDGLCK G L  A  L   +   G+ PN  T
Sbjct: 387 SGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFT 446

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           + I +  LC   ++  A ++F D+  KG   N   +  ++    ++    + + +L  M+
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKME 506

Query: 225 KRNVMPYASILSIIVDLLVKNE 246
               +P A    II+  L K +
Sbjct: 507 DNGCIPDAVTFEIIIIALFKKD 528



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 8/218 (3%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+T+T+ T+I+GLC +G V+KA     ++  +    N V+Y +LI+G C   D   A  L
Sbjct: 994  PDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKL 1053

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++  R  + DVV +N I+D LCK++ + +A  L   M   G+  D      +V Y  L
Sbjct: 1054 LRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISAD------VVTYNTL 1107

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ--MDKAHDLFLDMEVK 191
            I G C +GKLK A  L   +    + PNV TYNI + ALC + +  +D++  +   ME  
Sbjct: 1108 IYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDN 1167

Query: 192  GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            G   N V F  ++ +   K+E  KV +LL  M  R ++
Sbjct: 1168 GCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGLL 1205



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 123/240 (51%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   +   P  + +N I+D   K      A  L  +++ + I P+++T N LI+ FC+ 
Sbjct: 48  NRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHM 107

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                   +  +++ RG   D VT N ++  LC   ++ +A    D ++  G       +
Sbjct: 108 GQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGF------Q 161

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +N V+YG LI+G+CKIG  + A +L Q +      PNVV Y+  I ALC  + + +A+ L
Sbjct: 162 LNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGL 221

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +M VKG++ + V ++TL+  F  + +  + I LL  M  + + P     +I+VD L K
Sbjct: 222 FSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 35   AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
            A  L  +++ + I P++ T N LI+ FC+         +  +++ RG   D +TF  +++
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLIN 1004

Query: 95   ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             LC   ++++A    D ++  G       ++N V+YG LI+G+CKIG  + A +L + + 
Sbjct: 1005 GLCLKGQVNKALHFHDKLLAQGF------QLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058

Query: 155  RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
                 P+VV YN  I ALC  + + KA+ LF +M VKG++ + V + TL+  F    +  
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLK 1118

Query: 215  KVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + I LL  M  + + P     +I+VD L K
Sbjct: 1119 EAIGLLNKMVLKTINPNVRTYNILVDALCK 1148



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 41/270 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T N +I+  C  G +     +  ++      P+ VT N+LI G C      +A +
Sbjct: 91  QPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALH 150

Query: 73  LFIEMMDRGLQ-----------------------------------SDVVTFNVIMDELC 97
              +++ +G Q                                    +VV ++ I+D LC
Sbjct: 151 FHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALC 210

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K + + EA  L   M   G+  D      +V Y  LI G C  GKLK A  L   +    
Sbjct: 211 KYQLVSEAYGLFSEMTVKGISAD------VVTYSTLIYGFCIEGKLKEAIGLLNEMVLKT 264

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PNV TYNI + ALC + ++ +A  +   M    V P+ + ++TLM  +    E  K  
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            +  +M    V P     +I+++   KN++
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKM 354



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 8/153 (5%)

Query: 9    GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
            G + KP+ V YNTIID LCK   V KA  LF +M  + I+ +VVTYN+LI+GFC      
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLK 1118

Query: 69   EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK--MDEATRLLDLMIQGGVRPDAFCEIN 126
            EA  L  +M+ + +  +V T+N+++D LCK  K  +DE+  +L  M   G      C+ N
Sbjct: 1119 EAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNG------CKAN 1172

Query: 127  IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             V +  +I  L +  +     +L   +   GL+
Sbjct: 1173 AVTFEIIISALFEKDENDKVEKLLHEMIARGLL 1205



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 48/86 (55%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNT T+  ++DGLCK G +  A+E+F  +  +  + NV TYN +I G C      EA  
Sbjct: 441 RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALT 500

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCK 98
           +  +M D G   D VTF +I+  L K
Sbjct: 501 MLSKMEDNGCIPDAVTFEIIIIALFK 526



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 116  GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
            G++PD F  +NI     LI+  C +G++     +   + + G  P+ +T+   I+ LC  
Sbjct: 956  GIQPDLFT-LNI-----LINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLK 1009

Query: 176  EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
             Q++KA      +  +G   N V + TL+    +  +T   I+LLR +D R   P   + 
Sbjct: 1010 GQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMY 1069

Query: 236  SIIVDLLVKNEI 247
            + I+D L K+++
Sbjct: 1070 NTIIDALCKHQL 1081


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 134/245 (54%), Gaps = 10/245 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V Y  +ID LCK G VD A   F QM +E + P++  ++SL++G C  +   +AE L
Sbjct: 375 PGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKL 434

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E++D+G++ +   FN++M  LC+  ++ EA RL+DLM++  VRPD      +++Y  L
Sbjct: 435 FFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPD------VISYNTL 488

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG C  G++  A +L   +   GL P+  TYN  +H  C   ++D A+ LF +M +KG+
Sbjct: 489 VDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGL 548

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM--DKRNVMPYASILSIIVDLLVKNEISLNS 251
            P  V + T++    +     +  EL  +M  ++R    Y    +II++ L +N     +
Sbjct: 549 TPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYT--YTIILNGLCRNNFVDEA 606

Query: 252 IPQFN 256
              F 
Sbjct: 607 FKMFQ 611



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 130/290 (44%), Gaps = 68/290 (23%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+IDGLCK   VD+AK +F  M D+ + PN  TY  LIHG+       E   +
Sbjct: 200 PNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQM 259

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL------------------------- 108
             EM   GLQ D V + V++D LCKN +  EA  +                         
Sbjct: 260 LQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYAT 319

Query: 109 ----------LDLMIQGGVRPD-----------------------------AFCEINIVA 129
                     LDLM++ GV PD                              +    +V 
Sbjct: 320 EGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVN 379

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           YG LID LCK+G++ +A      +   G+ P++  ++  ++ LC  ++ +KA  LF ++ 
Sbjct: 380 YGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVL 439

Query: 190 VKGVAPNCVIFTTLMPSFIRKN---ETSKVIELLRSMDKR-NVMPYASIL 235
            +G+  N   F  LM +  R+    E  ++I+L+  +D R +V+ Y +++
Sbjct: 440 DQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLV 489



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 132/247 (53%), Gaps = 8/247 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYNT++ G CK   +D A  LF +M  + + P VVTYN+++HG        EA+ 
Sbjct: 514 KPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKE 573

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M++   + D+ T+ +I++ LC+N  +DEA ++   +    ++ D F  INI     
Sbjct: 574 LYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIF-TINI----- 627

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K G+ ++A +L  +++  GL+P+V TY +    L  +  +++  +LF  ME  G
Sbjct: 628 MIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENG 687

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS--LN 250
            APN  +   L+   + + +  +    L  +D++N    AS  S+++ +  + E      
Sbjct: 688 TAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDEKNFSLEASTTSMLISIYSRAEYQQLAK 747

Query: 251 SIPQFNR 257
           S+P+  R
Sbjct: 748 SLPEKYR 754



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 131/255 (51%), Gaps = 13/255 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCY 63
           EFG  C  N ++YN ++ GLC E   ++A EL   M D+   +  PNVVTY ++I G C 
Sbjct: 157 EFG--CTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCK 214

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           A   + A+ +F  M+D+G++ +  T+  ++       K  E  ++L  M   G++PD   
Sbjct: 215 AQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDC-- 272

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
               V Y  L+D LCK G+   AR +  SL R G+ P+V  Y I +H    +  + + H 
Sbjct: 273 ----VIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHS 328

Query: 184 LFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            FLD+ V+ GV+P+  IF  +  ++ +K    + + +   M ++ + P       ++D L
Sbjct: 329 -FLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDAL 387

Query: 243 VKNEISLNSIPQFNR 257
            K     +++ +FN+
Sbjct: 388 CKLGRVDDAVLKFNQ 402



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 15/268 (5%)

Query: 1   MANGNREFGVVCKP-----NTVTYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTY 54
           + +G   FG++ K      NTV +  ++ GLC    VD+A ++ L+ M +     NV++Y
Sbjct: 108 LKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNVISY 167

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQS---DVVTFNVIMDELCKNRKMDEATRLLDL 111
           N L+ G C      EA  L   M D G  S   +VVT+  ++D LCK + +D A  +   
Sbjct: 168 NILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQH 227

Query: 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           MI  GVRP      N   Y CLI G    GK K   ++ Q ++  GL P+ V Y + +  
Sbjct: 228 MIDKGVRP------NNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDY 281

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
           LC + +  +A ++F  +  KG+ P+  I+  L+  +  +   S++   L  M +  V P 
Sbjct: 282 LCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPD 341

Query: 232 ASILSIIVDLLVKNEISLNSIPQFNRQK 259
             I +I+ +   K  +   ++  F++ +
Sbjct: 342 HHIFNIMFNAYAKKAMIDEAMHIFDKMR 369



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ ++YNT++DG C  G +D+A +L   M    + P+  TYN+L+HG+C A   ++A  
Sbjct: 479 RPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYS 538

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL   VVT+N I+  L +  +  EA  L   MI    + D      I  Y  
Sbjct: 539 LFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCD------IYTYTI 592

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLC+   +  A ++ QSL    L  ++ T NI I AL    + + A DLF  +   G
Sbjct: 593 ILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYG 652

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           + P+   +  +  + I++    ++ EL  +M++    P + +L+ +V  L+
Sbjct: 653 LVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLL 703



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 21/261 (8%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELF-LQMKDENINPNVVTYNSLIHGFCYA 64
           RE  V   P++ TY  +I   C+ G +      F L +K      N V +  L+ G C A
Sbjct: 82  RECSVKVAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDA 141

Query: 65  NDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
              +EA + L   M + G   +V+++N+++  LC  ++ +EA  L+ +M   G   D   
Sbjct: 142 KRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDG---DGSH 198

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N+V Y  +IDGLCK   +  A+ + Q +   G+ PN  TY   IH   +  +  +   
Sbjct: 199 TPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQ 258

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII----- 238
           +  +M   G+ P+CVI+  L+    +    ++   +  S+ ++ + P+ +I  I+     
Sbjct: 259 MLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYA 318

Query: 239 -----------VDLLVKNEIS 248
                      +DL+V+N +S
Sbjct: 319 TEGALSEMHSFLDLMVRNGVS 339


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 140/247 (56%), Gaps = 6/247 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y+ IID LCK+  VD+A +L+ +M  + I+P+VVTY+ L+ GFC     N A  
Sbjct: 195 RPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAID 254

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+   +  D+ T+ +++D LCK  K+ EA  +L +M++  V  D      +V Y  
Sbjct: 255 LLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLD------VVVYST 308

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C + ++ NA+ +  ++T+ G+ P+V  Y+I I+ LC  +++D+A +LF ++  K 
Sbjct: 309 LMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKN 368

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P+ V +T+L+    +    S V +L   M  R   P     + ++D L KN     +I
Sbjct: 369 MVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAI 428

Query: 253 PQFNRQK 259
             FN+ K
Sbjct: 429 ALFNKMK 435



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 121/216 (56%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y+ +I+GLCK   VD+A  LF ++  +N+ P+ VTY SLI   C +   +    L
Sbjct: 336 PDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDL 395

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+DRG   DV+T+N ++D LCKN  +D A  L + M    +RP      N+  +  L
Sbjct: 396 FDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRP------NVYTFTIL 449

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK+G+LKNA E  Q L   G   NV TY + I+ LC +  +D+A  L   ME  G 
Sbjct: 450 LDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGC 509

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             + V F  ++ +F  K+E  K  +L+R M  R ++
Sbjct: 510 ISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGLL 545



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N  F V   P+T  +N I+  L        A  L+ QM+   + P+  T N +I+ FC+ 
Sbjct: 47  NHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHF 106

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A     +++  G Q + +T N +M  LC   K+ EA R  D ++  G R      
Sbjct: 107 GQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFR------ 160

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           ++ ++YG LI+G+CKIG+ + A  L + + R  + PNVV Y++ I  LC D  +D+A+DL
Sbjct: 161 LSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDL 220

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + +M  KG++P+ V ++ L+  F    + ++ I+LL  M   N+ P     +I+VD L K
Sbjct: 221 YTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCK 280



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T+  ++DGLCK G +  A E F  +  +    NV TY  +I+G C     +EA  
Sbjct: 440 RPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALA 499

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           L   M D G  SD VTF +++       + D+A +L+  MI  G+
Sbjct: 500 LQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
            ++ ++A   F  M           FN I+  L   ++   A  L   M    V PD F 
Sbjct: 36  THNADDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYF- 94

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            +NI+     I+  C  G++  A      + + G  PN +T N  +  LC + ++ +A  
Sbjct: 95  TLNII-----INCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALR 149

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
               +  +G   + + +  L+    +  ET   I LLR +++ ++ P   I S+I+D L 
Sbjct: 150 FHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLC 209

Query: 244 KNEI 247
           K+ +
Sbjct: 210 KDTL 213


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN--INPNVVTYNSLIHGFCYANDGNE 69
           C PN  +Y+ I+ GLC      +A +LF  M  E    +PNVV YN++IHGF    +  +
Sbjct: 224 CVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGK 283

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  LF EM  +G++ DVVT+N+I+D LCK R MD+A  +L  M   G +PD       V 
Sbjct: 284 ACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDT------VT 337

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y C+I G   +G+LK A ++ + +   GL+PN+V  N  + +LC   +  +A ++F  M 
Sbjct: 338 YNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMT 397

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            KG  P+ V + TL+  +  +   + +I L  SM    +     + +I++    K
Sbjct: 398 AKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAK 452



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYN IID LCK   +DKA+ +  QM      P+ VTYN +IHG+       EA  
Sbjct: 297 KPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAK 356

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M  RGL  ++V  N  +  LCK+ +  EA  + D M   G +PD      IV+Y  
Sbjct: 357 MFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPD------IVSYCT 410

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G    G   +   L  S+   G+  +   +NI IHA      +D A  +F +M+ +G
Sbjct: 411 LLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V+P+ V ++T++ +F R    +  +E    M  R + P  ++   I+ 
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQ 518



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 6/249 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN V YNT+I G  KEG   KA  LF +M  + + P+VVTYN +I   C A   +
Sbjct: 258 GGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMD 317

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +AE +  +M   G Q D VT+N ++       ++ EA ++   M   G+ P      NIV
Sbjct: 318 KAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIP------NIV 371

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
                +  LCK G+ K A E+  S+T  G  P++V+Y   +H   ++        LF  M
Sbjct: 372 ICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSM 431

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
           +  G+A +C +F  L+ ++ ++      + +   M ++ V P     S ++    +    
Sbjct: 432 KSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRL 491

Query: 249 LNSIPQFNR 257
            +++ +FN+
Sbjct: 492 TDAMEKFNQ 500



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 126/245 (51%), Gaps = 7/245 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+T+I    + G +  A E F QM    I PN   Y+S+I GFC      +A+ L
Sbjct: 473 PDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKEL 532

Query: 74  FIEMMDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             EM+++G+ + D+V FN +++ LCK+ ++ +A  + DL+   G RPD      ++ +  
Sbjct: 533 VSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPD------VITFTS 586

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C +GK+  A ++  ++   G+  ++VTY+  +     + +++    LF +M+ KG
Sbjct: 587 LIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKG 646

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           V PN V +  ++    R   T    +    M +       SI  II+  L +N  +  +I
Sbjct: 647 VKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAI 706

Query: 253 PQFNR 257
             F +
Sbjct: 707 ILFQK 711



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTY+T++DG  K G ++    LF +M+ + + PN VTY  ++ G   A     A   F E
Sbjct: 617 VTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M++ G    V  + +I+  LC+N   DEA  L   +    V+       +I     +I+ 
Sbjct: 677 MIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVK------FSITILNTMINA 730

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           + K+ + + A+EL  +++ +GL+PN  TY + I  L  D  ++ A+++F  ME  G+ P 
Sbjct: 731 MYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPG 790

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +   ++   + K E +K    L  +D + ++  AS  S+++ L  +
Sbjct: 791 SRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSR 838



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 7/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V+Y T++ G   EG+      LF  MK   I  +   +N LIH +      ++A  
Sbjct: 402 KPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAML 461

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  +G+  DVVT++ ++    +  ++ +A    + M+  G++P      N   Y  
Sbjct: 462 IFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQP------NTAVYHS 515

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           +I G C  G L  A+EL   +   G+  P++V +N  I++LC D ++  AHD+F  +   
Sbjct: 516 IIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDI 575

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  P+ + FT+L+  +    +  K  ++L +M+   V       S ++D   KN
Sbjct: 576 GERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKN 629



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V +N++I+ LCK+G V  A ++F  + D    P+V+T+ SLI G+C     ++A  
Sbjct: 543 RPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFK 602

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M   G+++D+VT++ ++D   KN ++++   L   M + GV+P      N V YG 
Sbjct: 603 ILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKP------NTVTYGI 656

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GL + G+   AR+    +  +G    V  Y I +  LC +   D+A  LF  +    
Sbjct: 657 MLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMN 716

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V  +  I  T++ +  +     +  EL  ++    ++P  S   +++  L+K+
Sbjct: 717 VKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKD 769



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 37/259 (14%)

Query: 35  AKELFLQMKDENINPNVV-----TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89
           A  LF ++  E   P VV     TY+ L+   C A   +    LF  ++  GL+   +T 
Sbjct: 136 ALALFNRVCREQAGPRVVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITA 195

Query: 90  NVIMDELCKNRKMDEATR-LLDLMIQGGVRPDAF-------------------------- 122
           + ++  LC   + +EA   LL  M + G  P+ F                          
Sbjct: 196 STLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMA 255

Query: 123 -----CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
                C  N+VAY  +I G  K G+   A  L   +TR G+ P+VVTYN+ I ALC    
Sbjct: 256 KEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARA 315

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           MDKA  +   M   G  P+ V +  ++  +       +  ++ R M  R ++P   I + 
Sbjct: 316 MDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNS 375

Query: 238 IVDLLVKNEISLNSIPQFN 256
            +  L K+  S  +   F+
Sbjct: 376 FLASLCKHGRSKEAAEIFD 394


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  149 bits (377), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 135/255 (52%), Gaps = 11/255 (4%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR F ++     + Y+TI+D LCK+G +  A   F  M  + I P++V YNSLIHG C  
Sbjct: 142 NRGFDLL-----IAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSF 196

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              NEA  L   MM +G+  +V TFNV++D  CK  K+  A  ++  M+  GV PD    
Sbjct: 197 GRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPD---- 252

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             +V Y  +I G C + ++ +A ++ + +   GL+PNVVTY+  IH  C    ++KA  +
Sbjct: 253 --VVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFV 310

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +M   G+  + V ++TL+  F +       IEL  +M + + +P     +II+D L K
Sbjct: 311 LDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFK 370

Query: 245 NEISLNSIPQFNRQK 259
            +    +I  F + +
Sbjct: 371 CQFHSEAISLFRKME 385



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 31/276 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN++I G C    ++ A ++F  M  + + PNVVTY+SLIHG+C   + N+A +
Sbjct: 250 EPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIF 309

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL-------------------LDLMI 113
           +  EM++ GL  DVVT++ ++   CK  + + A  L                   LD + 
Sbjct: 310 VLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLF 369

Query: 114 QGGVRPDAFC----------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           +     +A            E+NIV Y  ++DG+C  GK  +AREL   L   G+  +VV
Sbjct: 370 KCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVV 429

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            Y   I  LC +  +D A DL + ME  G  PN   +  L+   +++ + S+  + L  M
Sbjct: 430 AYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGLLQRYDISRSTKYLMLM 489

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
             + +   A+   +++     N+   NS  Q   QK
Sbjct: 490 KGKGLSADATTTELLISYFSANK--ENSALQVFLQK 523



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 9/235 (3%)

Query: 9   GVVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           G+ CK   P+ V YN++I GLC  G  ++A  L   M  + I PNV T+N L+  FC   
Sbjct: 173 GMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEG 232

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A+ +   M+  G++ DVVT+N ++   C   +M++A ++ +LMI  G+ P      
Sbjct: 233 KISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLP------ 286

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+V Y  LI G CK   +  A  +   +   GL  +VVT++  I   C   + + A +LF
Sbjct: 287 NVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELF 346

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             M      PN      ++    +    S+ I L R M+K N+       +I++D
Sbjct: 347 CTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLD 401



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 9/228 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T   +I+ LC          +   M    + P VVT+ +LI+G C   +   A  
Sbjct: 39  KPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAAR 98

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               + D G +S+  T   I++ LCK      A   L+  I+G  R        ++AY  
Sbjct: 99  FADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLE-KIEGRNRGFDL----LIAYST 153

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D LCK G L  A      +T  G+ P++V YN  IH LC+  + ++A  L  +M  KG
Sbjct: 154 IMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKG 213

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           + PN   F  L+ +F ++ + S+   ++  M    V P    Y S++S
Sbjct: 214 IMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVIS 261



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 48/199 (24%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G++ DV T  ++++ LC  +       +L  M + GV P       +V +  LI+GLC  
Sbjct: 37  GVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEP------TVVTFATLINGLCAE 90

Query: 141 GKLKNARELSQSLTRAGLMPN------------------------------------VVT 164
           G +  A   + SL   G   N                                    ++ 
Sbjct: 91  GNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIA 150

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP---SFIRKNETSKVIELLR 221
           Y+  + +LC D  +  A + F  M  KG+ P+ V + +L+    SF R NE +    LL 
Sbjct: 151 YSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATT---LLG 207

Query: 222 SMDKRNVMPYASILSIIVD 240
           +M ++ +MP     +++VD
Sbjct: 208 NMMRKGIMPNVQTFNVLVD 226


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y T+I G  K G V  A + F +M  + I+P+ +TY +LI GF       E + L
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNL 420

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ RGL+ D VT+  ++D  CK  +M  A  L + M+Q G+ P      NIV YG L
Sbjct: 421 FHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTP------NIVTYGAL 474

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+L  A EL   + + GL  NV  YN  ++ +C    +++A  L  +MEV G+
Sbjct: 475 IDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI 534

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+ + +TT++ ++ R  +  K  +LL+ M  R + P     +++++
Sbjct: 535 DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMN 581



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 9/239 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   YN++++G+CK G +++A +L  +M+   I+P+ +TY ++I  +C   D ++A  L 
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLL 561

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+DRGLQ  VVTFNV+M+  C    +++  RLL  M++ G+ PDA      + Y  L+
Sbjct: 562 QEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDA------ITYNTLM 615

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    +    ++ + +   G+ P+  TYNI I   C    + +A  L+ +M  KG  
Sbjct: 616 KQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYV 675

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN---EISLN 250
           P    +  L+  F +K +  +  EL   M    ++    I +  VD+  +    EI+LN
Sbjct: 676 PTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLN 734



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY T+ID  CK G +  A  L  +M    + PN+VTY +LI G C   + + A  
Sbjct: 430 KPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANE 489

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  +GLQ +V  +N +++ +CK   +++A +L+  M   G+ PDA      + Y  
Sbjct: 490 LLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDA------ITYTT 543

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID  C++G +  A +L Q +   GL P VVT+N+ ++  C    ++    L   M  KG
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG 603

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ + + TLM     +N  +   ++ + M  + V P ++  +I++
Sbjct: 604 IVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILI 650



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 8/239 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+G+    NT +YN II  LC+ G V +A  L +QM   +  P+VV+Y+++I G+C+  +
Sbjct: 251 EYGI--SWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGE 308

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A  L  +M  +GL+ +  T+N I+  LCK  K  EA ++L  M+   + PD      
Sbjct: 309 LKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDN----- 363

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  LI G  K+G ++ A +    +    + P+ +TY   I       ++ +  +LF 
Sbjct: 364 -VVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFH 422

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +M  +G+ P+ V +TTL+  + +  E      L   M +  + P       ++D L K+
Sbjct: 423 EMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH 481



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 12/213 (5%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           I+ N  +YN +I+  C      EA  L ++M  R    DVV+++ ++D  C   ++ +A 
Sbjct: 254 ISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKAL 313

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
           +L+D M   G++P+ +       Y  +I  LCKIGK   A ++ + +    ++P+ V Y 
Sbjct: 314 KLMDDMQIKGLKPNRY------TYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYT 367

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE---LLRSM 223
             IH       +  A+  F +M  K ++P+ + +TTL+  F    +  KVIE   L   M
Sbjct: 368 TLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF---GQGGKVIEPQNLFHEM 424

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
             R + P     + ++D+  K    +N+    N
Sbjct: 425 ISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHN 457



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+N +++G C  G ++    L   M ++ I P+ +TYN+L+   C  N  N    
Sbjct: 570 QPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTK 629

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M ++G+  D  T+N+++   CK R + EA  L   MI+ G  P       + +Y  
Sbjct: 630 IYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVP------TVTSYNA 683

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           LI    K  K+  AREL + +   GL+ +   YN  +  +C +E
Sbjct: 684 LIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVD-MCYEE 726



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + ++     L + G + +A++L  ++    +   V + N+ +     AN+    E  
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRI--ANNSEGIEMA 245

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
                + G+  +  ++N+I+  LC+  K+ EA RLL  M      PD      +V+Y  +
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPD------VVSYSTV 299

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C +G+LK A +L   +   GL PN  TYN  I  LC   +  +A  +  +M  + +
Sbjct: 300 IDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKI 359

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSII 238
            P+ V++TTL+  F +        +    M  + + P Y +  ++I
Sbjct: 360 IPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLI 405



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           + F++    L +   + EA +LLD ++  G+         +V        L +I      
Sbjct: 191 IAFDIFFQVLVEIGHLSEARKLLDKLLSYGL---------VVTVDSCNAFLSRIANNSEG 241

Query: 147 RELS-QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
            E++ +     G+  N  +YNI I++LC   ++ +AH L + M+ +   P+ V ++T++ 
Sbjct: 242 IEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVID 301

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +    E  K ++L+  M  + + P     + I+ LL K
Sbjct: 302 GYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCK 340


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CKE  ++ A+ +  +M    ++PNVV YN+L+ G C A+   EAE
Sbjct: 283 CAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAE 342

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM D+    D VTFN+++D LC+N  +D    +L+ M++ G  PD      ++ Y 
Sbjct: 343 GLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPD------VITYT 396

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L +S+   G  PN V+Y I +  LC+ E+   A +L   M  +
Sbjct: 397 TVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQ 456

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  PN V F TL+    +K    + IELL+ M      P     S ++D L K
Sbjct: 457 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 509



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG +D+A  L   M      PN V+Y  ++ G C A    +AE
Sbjct: 388 CMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAE 447

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G   + VTFN +++ LCK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 448 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD------LISYS 501

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K G    A EL   + + G+ PN + Y+    AL  + +++K   +F +++  
Sbjct: 502 TVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDT 561

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            V  + V++  ++ S  ++ ET + IE L  M     +P  S  +I++
Sbjct: 562 TVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILI 609



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 8/219 (3%)

Query: 12  CKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           C+PNTV+Y  ++ GLC  E +VD A+EL  QM  +   PN VT+N+LI+  C      +A
Sbjct: 423 CRPNTVSYTIVLKGLCSAERWVD-AEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 481

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  +M+  G   D+++++ ++D L K    DEA  LL++M++ G+ P      N + Y
Sbjct: 482 IELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSP------NTIIY 535

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +   L   G++    ++ +++    +  + V YN  I +LC   + D+A +    M  
Sbjct: 536 SSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVS 595

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            G  PN   +T L+     +    +  E+L  +  +  +
Sbjct: 596 SGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKGAL 634



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 7/218 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  ++  LC  G +  A  +   M      P    Y+  +   C A+    A  +
Sbjct: 109 PNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGV 168

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             ++  RG   DV   N+++  +C    +DEA RLL DL+      P   CE ++V+Y  
Sbjct: 169 LRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLL------PSFGCEPDVVSYNA 222

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLC   +  + ++L + +  AG  PN+VT++  I  LC +   ++ H++   M   G
Sbjct: 223 VLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHG 282

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            AP+  ++ T++    ++        +L  M    + P
Sbjct: 283 CAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSP 320



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 12/230 (5%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YN ++ G C+ G   +            + PN  TY  L+   C      +A  +  +M 
Sbjct: 82  YNAMVAGYCRAG---QLAAARRLAASVPVAPNAYTYFPLVRALCARGRIADALAVLDDMA 138

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            RG       ++V ++  C+      A  +L DL  +G       C +++     ++  +
Sbjct: 139 RRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRG-------CALDVGNCNLVLQAV 191

Query: 138 CKIGKLKNA-RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           C  G +  A R L   L   G  P+VV+YN  +  LC   +     DL  +M   G  PN
Sbjct: 192 CDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPN 251

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            V F+TL+    R     +V E+   M +    P   + + I+D + K E
Sbjct: 252 IVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEE 301


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 131/249 (52%), Gaps = 6/249 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN V+Y  +I+G   EG VDKA  LFL+M D  I PNVVTY ++I G C A   +
Sbjct: 196 GRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVD 255

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            AE +F +M+D+G++ D  T+N ++       K  E  R+L+ M   G++PD +      
Sbjct: 256 RAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCY------ 309

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            YG L++ LC  G+ + AR L  S+ R G+ PNV  Y I IH       + + HDL   M
Sbjct: 310 TYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLM 369

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
              G++P+  IF  +  ++ +K    + + +   M ++ + P       ++D L K    
Sbjct: 370 VENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRV 429

Query: 249 LNSIPQFNR 257
            +++ +FN+
Sbjct: 430 DDAVLKFNQ 438



 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 133/251 (52%), Gaps = 9/251 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD---ENINPNVVTYNSLIHGFCYANDGN 68
           C P+ V+YNT++ G C E   ++A EL   M D    +  PNVV+Y  +I+GF      +
Sbjct: 161 CTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVD 220

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF+EMMDRG+Q +VVT+  ++D LCK + +D A  +   MI  GV+PD        
Sbjct: 221 KAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDN------D 274

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y CLI G   IGK K    + + ++  GL P+  TY   ++ LCN+ +  +A  LF  M
Sbjct: 275 TYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSM 334

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             KG+ PN  I+  L+  +  K   S++ +LL  M +  + P   I +II     K  + 
Sbjct: 335 IRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMI 394

Query: 249 LNSIPQFNRQK 259
             ++  FN+ K
Sbjct: 395 DEAMHIFNKMK 405



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 125/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y  +ID LCK G VD A   F QM +E + PN+  +NSL++G C  +   +A+  
Sbjct: 411 PDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEF 470

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+++G++ DVV FN I+  LC   ++ +A RL+DLM + G RP       +++Y  L
Sbjct: 471 YFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRP------GVISYTTL 524

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C +G++  A +    +   GL P+  TYN  +H  C   ++D A+ +F +M   G+
Sbjct: 525 IGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI 584

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P  V ++T++         S+  EL  +M          I +II++ L KN
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKN 636



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY T+IDGLCK   VD+A+ +F QM D+ + P+  TYN LIHG+       E   
Sbjct: 235 QPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVR 294

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM   GL+ D  T+  +++ LC N +  EA  L D MI+ G++P      N+  YG 
Sbjct: 295 MLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKP------NVAIYGI 348

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G    G L    +L   +   GL P+   +NI   A      +D+A  +F  M+ +G
Sbjct: 349 LIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQG 408

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++P+ V +  L+ +  +       +     M    V P
Sbjct: 409 LSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAP 446



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 131/247 (53%), Gaps = 8/247 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYNT++ G C+ G +D A  +F +M    I P VVTY++++HG       +EA+ 
Sbjct: 550 KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKE 609

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M+  G Q ++  +N+I++ L KN  +DEA +L   +           ++ I  +  
Sbjct: 610 LYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDF------QLEITTFNI 663

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K G+ ++A  L  +++  GL+P+V TY +    L  +  +++  DLF  ME  G
Sbjct: 664 MIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN-- 250
             PN  +   L+   + + + ++    L  +D++N    AS  ++++ LL ++E   +  
Sbjct: 724 TTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHAT 783

Query: 251 SIPQFNR 257
           S+P+  R
Sbjct: 784 SLPEKYR 790



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 8/238 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE  +   P+  TY+ +I   C+ G ++     F  +       N +  N L+ G C A 
Sbjct: 84  RECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAK 143

Query: 66  DGNEAEYLFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              EA  + ++ M + G   DVV++N ++   C  ++ +EA  LL +M     R    C 
Sbjct: 144 RLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRS---CP 200

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V+Y  +I+G    G++  A  L   +   G+ PNVVTY   I  LC  + +D+A  +
Sbjct: 201 PNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGV 260

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           F  M  KGV P+   +  L+  ++   +  +V+ +L  M    + P    Y S+L+ +
Sbjct: 261 FQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYL 318



 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            +G+V  P+  TY  I + L +EG++++  +LF  M+     PN    N+L+    +  D
Sbjct: 686 SYGLV--PDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGD 743

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
              A     ++ ++    +  T  +++  L ++     AT L
Sbjct: 744 ITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHATSL 785


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y T+I G  K G V  A + F +M  + I+P+ +TY +LI GF       E + L
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNL 420

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ RGL+ D VT+  ++D  CK  +M  A  L + M+Q G+ P      NIV YG L
Sbjct: 421 FHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTP------NIVTYGAL 474

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+L  A EL   + + GL  NV  YN  ++ +C    +++A  L  +MEV G+
Sbjct: 475 IDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI 534

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+ + +TT++ ++ R  +  K  +LL+ M  R + P     +++++
Sbjct: 535 DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMN 581



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 9/239 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   YN++++G+CK G +++A +L  +M+   I+P+ +TY ++I  +C   D ++A  L 
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLL 561

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+DRGLQ  VVTFNV+M+  C    +++  RLL  M++ G+ PDA      + Y  L+
Sbjct: 562 QEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDA------ITYNTLM 615

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    +    ++ + +   G+ P+  TYNI I   C    + +A  L+ +M  KG  
Sbjct: 616 KQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYV 675

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN---EISLN 250
           P    +  L+  F +K +  +  EL   M    ++    I +  VD+  +    EI+LN
Sbjct: 676 PTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLN 734



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY T+ID  CK G +  A  L  +M    + PN+VTY +LI G C   + + A  
Sbjct: 430 KPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANE 489

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  +GLQ +V  +N +++ +CK   +++A +L+  M   G+ PDA      + Y  
Sbjct: 490 LLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDA------ITYTT 543

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID  C++G +  A +L Q +   GL P VVT+N+ ++  C    ++    L   M  KG
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG 603

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ + + TLM     +N  +   ++ + M  + V P ++  +I++
Sbjct: 604 IVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILI 650



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 8/239 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+G+    NT +YN II  LC+ G V +A  L +QM   +  P+VV+Y+++I G+C+  +
Sbjct: 251 EYGI--SWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGE 308

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A  L  +M  +GL+ +  T+N I+  LCK  K  EA ++L  M+   + PD      
Sbjct: 309 LKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDN----- 363

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  LI G  K+G ++ A +    +    + P+ +TY   I       ++ +  +LF 
Sbjct: 364 -VVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFH 422

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +M  +G+ P+ V +TTL+  + +  E      L   M +  + P       ++D L K+
Sbjct: 423 EMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKH 481



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 12/213 (5%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           I+ N  +YN +I+  C      EA  L ++M  R    DVV+++ ++D  C   ++ +A 
Sbjct: 254 ISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKAL 313

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
           +L+D M   G++P+ +       Y  +I  LCKIGK   A ++ + +    ++P+ V Y 
Sbjct: 314 KLMDDMQIKGLKPNRY------TYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYT 367

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE---LLRSM 223
             IH       +  A+  F +M  K ++P+ + +TTL+  F    +  KVIE   L   M
Sbjct: 368 TLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF---GQGGKVIEPQNLFHEM 424

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
             R + P     + ++D+  K    +N+    N
Sbjct: 425 ISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHN 457



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 7/164 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+N +++G C  G ++    L   M ++ I P+ +TYN+L+   C  N  N    
Sbjct: 570 QPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTK 629

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M ++G+  D  T+N+++   CK R + EA  L   MI+ G  P       + +Y  
Sbjct: 630 IYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVP------TVTSYNA 683

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           LI    K  K   AREL + +   GL+ +   YN  +  +C +E
Sbjct: 684 LIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVD-MCYEE 726



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + ++     L + G + +A++L  ++    +   V + N+ +     AN+    E  
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRI--ANNSEGIEMA 245

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
                + G+  +  ++N+I+  LC+  K+ EA RLL  M      PD      +V+Y  +
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPD------VVSYSTV 299

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C +G+LK A +L   +   GL PN  TYN  I  LC   +  +A  +  +M  + +
Sbjct: 300 IDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKI 359

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSII 238
            P+ V++TTL+  F +        +    M  + + P Y +  ++I
Sbjct: 360 IPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLI 405



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 4/125 (3%)

Query: 1   MANGNREFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS 56
           + +G+R  G + +    P+ +TYNT++   C    ++   +++ +M+++ + P+  TYN 
Sbjct: 589 LEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNI 648

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           LI G C A +  EA +L+ EM+++G    V ++N ++    K RK  EA  L + M   G
Sbjct: 649 LIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHG 708

Query: 117 VRPDA 121
           +  D 
Sbjct: 709 LVADG 713



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           + F++    L +   + EA +LLD ++  G+         +V        L +I      
Sbjct: 191 IAFDIFFQVLVEIGHLSEARKLLDKLLSYGL---------VVTVDSCNAFLSRIANNSEG 241

Query: 147 RELS-QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
            E++ +     G+  N  +YNI I++LC   ++ +AH L + M+ +   P+ V ++T++ 
Sbjct: 242 IEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVID 301

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +    E  K ++L+  M  + + P     + I+ LL K
Sbjct: 302 GYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCK 340


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/218 (38%), Positives = 124/218 (56%), Gaps = 9/218 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDK---AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           PN VTYNT+IDG CK G V K   A  +  +M +  ++PN VT+N LI GFC   + + A
Sbjct: 263 PNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAA 322

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F EM  +GL+  VVT+N +++ LC   K++EA  LLD M+   ++P      N++ Y
Sbjct: 323 LKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKP------NVITY 376

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI+G CK   L+ AREL  ++ + GL PNV+T+N  +H  C   +M++A  L   M  
Sbjct: 377 NALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLE 436

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           KG  PN   +  L+  F R+ +  +V  LL  M  R V
Sbjct: 437 KGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGV 474



 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+VT+N +IDG CK+  +  A ++F +M+ + + P VVTYNSL++G C     NEA+ L
Sbjct: 301 PNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVL 360

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+   L+ +V+T+N +++  CK + ++EA  L D + + G+ P      N++ +  L
Sbjct: 361 LDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTP------NVITFNTL 414

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK GK++ A  L + +   G +PN  TYN  I   C + +M++  +L  +M+ +GV
Sbjct: 415 LHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGV 474

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             + V +  L+ ++  K E  K   L+  M  + + P     +I+++
Sbjct: 475 KADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLN 521



 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 131/229 (57%), Gaps = 9/229 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---YANDGNEA 70
           PN +T+NT+I+GLCK G ++KA ++   MK     PNVVTYN+LI G+C         +A
Sbjct: 228 PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA 287

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + +  EM++  +  + VTFNV++D  CK+  +  A ++ + M   G++P       +V Y
Sbjct: 288 DAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKP------TVVTY 341

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L++GLC  GKL  A+ L   +  + L PNV+TYN  I+  C  + +++A +LF ++  
Sbjct: 342 NSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGK 401

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +G+ PN + F TL+  + +  +  +   L + M ++  +P AS  + ++
Sbjct: 402 QGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLI 450



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 10/223 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  VTYN++++GLC EG +++AK L  +M   N+ PNV+TYN+LI+G+C      EA  
Sbjct: 335 KPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARE 394

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  +  +GL  +V+TFN ++   CK  KM+EA  L  +M++ G  P+A        Y C
Sbjct: 395 LFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNA------STYNC 448

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C+ GK++  + L   +   G+  + VTYNI I A C  ++  KA  L  +M  KG
Sbjct: 449 LIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKG 508

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPY 231
           + P+ + +  L+  +  +      + L + M+K     NV+ Y
Sbjct: 509 LKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTY 551



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 41/233 (17%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---------- 62
           KPN +TYN +I+G CK+  +++A+ELF  +  + + PNV+T+N+L+HG+C          
Sbjct: 370 KPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFL 429

Query: 63  -----------------------YANDGN--EAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                  +  +G   E + L  EM  RG+++D VT+N+++   C
Sbjct: 430 LQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWC 489

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           + ++  +A RL+D M+  G++P        + Y  L++G C  G L+ A  L + + + G
Sbjct: 490 EKKEPKKAARLIDEMLDKGLKPSH------LTYNILLNGYCMEGNLRAALNLRKQMEKEG 543

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
              NVVTYN+ I   C   +++ A+ L  +M  KG+ PN   +  +    + K
Sbjct: 544 RWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEK 596



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 120/229 (52%), Gaps = 18/229 (7%)

Query: 20  NTIIDGLCKEGFVDKAK-----ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N+II  +    +V+ +K     E F +  D     +V++ N L+      N+    E+++
Sbjct: 159 NSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVY 218

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ R +  +++TFN +++ LCK  K+++A  ++D M   G  P      N+V Y  LI
Sbjct: 219 KEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWP------NVVTYNTLI 272

Query: 135 DGLCK---IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           DG CK   +GK+  A  + + +    + PN VT+N+ I   C DE +  A  +F +M+ +
Sbjct: 273 DGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQ 332

Query: 192 GVAPNCVIFTTLMPSFIRKNE--TSKVI--ELLRSMDKRNVMPYASILS 236
           G+ P  V + +L+     + +   +KV+  E+L S  K NV+ Y ++++
Sbjct: 333 GLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALIN 381


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 134/229 (58%), Gaps = 12/229 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY+TII GLCK G V +A E+  +M ++ +NP+V TY  ++   C A   +EA+ 
Sbjct: 7   EPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADE 66

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M++RG  ++ V +N +++ LCK+  ++ A +LL+ M   G  PD       + Y  
Sbjct: 67  LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDN------ITYNT 120

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF--LDMEV 190
           ++ GLC++GK+  A++   S+   G  P+VV YN  + AL  + ++ +A  LF  +DM  
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + VAP+ + + TL+  F R  +T + ++L + +  +  MP    Y SIL
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSIL 229



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 121/220 (55%), Gaps = 10/220 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN ++DGLCK   VDKA ELF  M D    P++V+Y+ +++G C  N  ++A  L
Sbjct: 325 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 384

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M++R L  DVVTFN++MD LCK  K+DEA  LLD+M +  V PD       V    L
Sbjct: 385 FDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDG------VTCTTL 438

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG- 192
           + GLC+  +   A  L Q +   G + +V+ +NI +  LC + ++ +A  LF    VK  
Sbjct: 439 MHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQAL-LFFKSMVKSD 497

Query: 193 --VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              +P+ V +TTL+ + I      + ++  + M      P
Sbjct: 498 GEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAP 537



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  NTV YN +I+GLCK+  +++A +L  +M  +   P+ +TYN+++ G C     +EA+
Sbjct: 76  CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAK 135

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRPDAFCEINIVA 129
             F  M  RG   DVV +N ++D L K  K+ EA  L   M      V PD      ++ 
Sbjct: 136 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPD------LIT 189

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LIDG C++ K   A +L + +   G MP+ VTYN  +  L     MD+A ++F  M 
Sbjct: 190 YNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV 249

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             G APN   ++ ++    R    ++ +EL   M ++   P   + + ++D+L K
Sbjct: 250 DSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCK 304



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY+ ++ G C+ G + +  EL+ +M ++  +P+V+  N++I   C A   ++A 
Sbjct: 253 CAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAH 312

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM   G   DVVT+N+++D LCK   +D+A  L   M+  G  PD      IV+Y 
Sbjct: 313 KVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD------IVSYS 366

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +++GLCK  K+ +AR L   +    L+P+VVT+NI +  LC   ++D+A DL   M   
Sbjct: 367 VVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEH 426

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
            V P+ V  TTLM    R   T + + L + M ++    +V+P+  +L+
Sbjct: 427 NVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLA 475



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 132/262 (50%), Gaps = 31/262 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           P+ V YN ++D L KEG V +A  LF  + M D  + P+++TYN+LI GFC     +EA 
Sbjct: 148 PDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAM 207

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------F 122
            LF +++ +G   D VT+N I+  L +   MDEA  +   M+  G  P+           
Sbjct: 208 KLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGH 267

Query: 123 CEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C +                    +++    +ID LCK  K+ +A ++ + +++ G +P+V
Sbjct: 268 CRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDV 327

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTYNI +  LC    +DKAH+LF  M   G AP+ V ++ ++    + N+      L   
Sbjct: 328 VTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDR 387

Query: 223 MDKRNVMPYASILSIIVDLLVK 244
           M +R ++P     +I++D L K
Sbjct: 388 MIERKLVPDVVTFNILMDGLCK 409



 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 132/243 (54%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN+I+ GL ++  +D+A+E+F +M D    PN  TY+ ++ G C   +      L
Sbjct: 220 PDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLEL 279

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM ++    DV+  N ++D LCK +K+D+A ++L+ M + G  PD      +V Y  L
Sbjct: 280 YEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPD------VVTYNIL 333

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK   +  A EL  ++   G  P++V+Y++ ++ LC   ++  A  LF  M  + +
Sbjct: 334 LDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKL 393

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V F  LM    +  +  +  +LL  M + NV+P     + ++  L +++ +  ++ 
Sbjct: 394 VPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVR 453

Query: 254 QFN 256
            F 
Sbjct: 454 LFQ 456



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 119/220 (54%), Gaps = 8/220 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y+ +++GLCK   V  A+ LF +M +  + P+VVT+N L+ G C A   +EA+
Sbjct: 358 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAK 417

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M +  +  D VT   +M  LC++++ DEA RL   M++ G   D      ++ + 
Sbjct: 418 DLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVAD------VLPHN 471

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG--LMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            ++ GLC+ GKL  A    +S+ ++     P+VVTY   ++AL    ++D+A D F  M 
Sbjct: 472 IVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMT 531

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             G AP+ V + TLM    ++    +   L ++M ++  +
Sbjct: 532 GSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFL 571



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 113/216 (52%), Gaps = 8/216 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M ++   P+VVTY+++I G C      EA  +  EM ++G+  DV T+ +I+D LC+  K
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +DEA  L   MI+ G      C  N VAY  LI+GLCK   ++ A +L + +   G  P+
Sbjct: 61  VDEADELFHKMIERG------CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPD 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
            +TYN  +  LC   ++ +A   F  M  +G +P+ V +  L+ +  ++ + ++   L +
Sbjct: 115 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFK 174

Query: 222 SMD--KRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
           +MD   R V P     + ++D   + E +  ++  F
Sbjct: 175 TMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLF 210



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 8/237 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYNTI+ GLC+ G V +AK+ F  M     +P+VV YN L+          EA  
Sbjct: 112 EPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWG 171

Query: 73  LF--IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           LF  ++M DR +  D++T+N ++D  C+  K DEA +L   +I  G  PD       V Y
Sbjct: 172 LFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDT------VTY 225

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++ GL +   +  A E+ + +  +G  PN  TY+I +   C    M +  +L+ +M  
Sbjct: 226 NSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTE 285

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           K  +P+ ++   ++    +  +     ++L  M K   +P     +I++D L K  +
Sbjct: 286 KRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNL 342



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + +N ++ GLC+EG + +A   F  M   D   +P+VVTY +L++    A   ++A  
Sbjct: 466 DVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVD 525

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
            F +M   G   D V +N +M+ L K  +  +A RL   M + G   D F
Sbjct: 526 YFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 575



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M   + EF     P+ VTY T+++ L + G VD+A + F QM      P+ V YN+L++G
Sbjct: 493 MVKSDGEFS----PDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNG 548

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSD 85
                   +A+ L   M ++G  SD
Sbjct: 549 LRKQGRHIQADRLTQAMKEKGFLSD 573


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 6/214 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN +I+GLC +G VD+A  L  QM   ++ PNVVT+N LI+GFC     NEA  
Sbjct: 260 RPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAIN 319

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M  +G+  + +T+  ++D  CK+ +M++A  L ++MI  G+ P+      +  Y C
Sbjct: 320 LFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPE------VSTYNC 373

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+ G +K AR L   +    L  +VVTYNI I +LC   +  KA  L  +M  KG
Sbjct: 374 LIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKG 433

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           + P+ V + TLM  + R+      + +   M+++
Sbjct: 434 LNPSHVTYNTLMDGYCREGNLRAALIVRTRMERK 467



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN +IDG CK+  V  A  +F +M+ + + PNVVTYN LI+G C     +EA  L
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVAL 285

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+   L+ +VVT NV+++  CKN+ ++EA  L + M + GV P+A      + Y  L
Sbjct: 286 RDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNA------MTYTTL 339

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  CK G++++A  L   +   G+ P V TYN  I  LC    +  A  L  +M  K +
Sbjct: 340 IDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKL 399

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + + V +  L+ S  +K E+ K ++LL  M ++ + P     + ++D
Sbjct: 400 SADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMD 446



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 9/242 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDK---AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           PN +TYNT+IDG CK G + K   A  +  +M  + I PN VTYN LI GFC   + + A
Sbjct: 188 PNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGA 247

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F EM  +GL+ +VVT+N++++ LC + K+DEA  L D M+   + P      N+V +
Sbjct: 248 MRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEP------NVVTH 301

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI+G CK   +  A  L   + + G+ PN +TY   I A C D +M+ A  L+  M  
Sbjct: 302 NVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMID 361

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
           +G+ P    +  L+    RK +      L+  M  + +       +I++D L K   S  
Sbjct: 362 RGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRK 421

Query: 251 SI 252
           ++
Sbjct: 422 AV 423



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 6/197 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY T+ID  CK+G ++ A  L+  M D  I P V TYN LI G C   D   A  L
Sbjct: 331 PNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSL 390

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ + L +DVVT+N+++D LCK  +  +A +LLD M + G+ P        V Y  L
Sbjct: 391 MNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSH------VTYNTL 444

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG C+ G L+ A  +   + R G   NVVT+N+ I   C   +++ A+ L  +M  +G+
Sbjct: 445 MDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGL 504

Query: 194 APNCVIFTTLMPSFIRK 210
            PN   +  +    + K
Sbjct: 505 VPNRTTYEIIKEEMMEK 521



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 9/236 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + ++ N ++ GL KE      + ++ +M    I  NV+++N +++G C     N A  
Sbjct: 117 KLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGD 176

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR---KMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           +  +M   G+  +V+T+N ++D  CK     KM +A  +L  M+  G+ P      N V 
Sbjct: 177 VIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICP------NEVT 230

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LIDG CK   +  A  +   + R GL PNVVTYNI I+ LC+D ++D+A  L   M 
Sbjct: 231 YNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMV 290

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              + PN V    L+  F +    ++ I L   M+K+ V P A   + ++D   K+
Sbjct: 291 SSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKD 346



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 116/223 (52%), Gaps = 9/223 (4%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           E F +  D     ++++ N L+ G    ++  + E+++ EM+ R ++ +V++FN++++ L
Sbjct: 106 EAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGL 165

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK---IGKLKNARELSQSL 153
           CK  K++ A  +++ M   GV P      N++ Y  LIDG CK   IGK+  A  + + +
Sbjct: 166 CKVGKLNRAGDVIEDMKVWGVSP------NVITYNTLIDGYCKMGRIGKMYKADAILKEM 219

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              G+ PN VTYNI I   C DE +  A  +F +M+ +G+ PN V +  L+       + 
Sbjct: 220 VAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKV 279

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
            + + L   M   ++ P     +++++   KN+    +I  FN
Sbjct: 280 DEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFN 322


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +T+NT+I G C+   VD   +L  +M +  +  N +TY +LIHGFC   D N A+
Sbjct: 357 CSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQ 416

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-----CEIN 126
            L  EM+  G+  +VVT N ++D LC N K+ +A  +   M +  +  DA       E +
Sbjct: 417 DLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPD 476

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LI GL   GK   A EL + +   G++P+ +TYN  IH LC   ++D+A  +F 
Sbjct: 477 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFD 536

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
            M  K  +PN V FTTL+  + +       +EL   M +R ++  A
Sbjct: 537 SMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 582



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 17/228 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN +I+   KEG   +A+EL+ +M    I P+ +TY+S+I GFC  N  + AE++
Sbjct: 289 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHM 348

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  +G   D++TFN ++   C+ +++D+  +LL  M + G+        N + Y  L
Sbjct: 349 FYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVA------NTITYTTL 402

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME---- 189
           I G C++G L  A++L Q +  +G+ PNVVT N  +  LC++ ++  A ++F  M+    
Sbjct: 403 IHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 462

Query: 190 -------VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
                    GV P+   +  L+   I + +  +  EL   M  R ++P
Sbjct: 463 DIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 510



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 12/219 (5%)

Query: 13  KPNTVTY-----NTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYAND 66
           KPN V +       +I+G C  G   +A++L  +M + + I+P+VVTYN+LI+ F     
Sbjct: 247 KPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGK 306

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EAE L+ EM+ RG+    +T++ ++D  CK  ++D A  +  LM   G  PD      
Sbjct: 307 FFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPD------ 360

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           I+ +  LI G C+  ++ +  +L   +T AGL+ N +TY   IH  C    ++ A DL  
Sbjct: 361 IITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQ 420

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           +M   GV PN V   TL+       +    +E+ ++M K
Sbjct: 421 EMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK 459



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 18/224 (8%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIH 59
           VC PN VT NT++DGLC  G +  A E+F  M+              + P+V TYN LI 
Sbjct: 427 VC-PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILIS 485

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G        EAE L+ EM  RG+  D +T+N ++  LCK  ++DEAT++ D M      P
Sbjct: 486 GLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSP 545

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                 N+V +  LI+G CK G++ +  EL   + R G++ N +TY   IH       ++
Sbjct: 546 ------NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNIN 599

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            A D+F +M   GV P+ +    ++     K E  + + +L  +
Sbjct: 600 GALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDL 643



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 123/240 (51%), Gaps = 13/240 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD-ENINPNVVTY-----NSLIHGFCYAND 66
           +PN +TY TI+DG+CK G    A  L  +M++  +I PNVV +       +I+GFC +  
Sbjct: 211 QPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGR 270

Query: 67  GNEAEYLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
            +EA+ L  EM++R  +  DVVT+N +++   K  K  EA  L D M+  G+ P      
Sbjct: 271 WSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP------ 324

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           + + Y  +IDG CK  +L  A  +   +   G  P+++T+N  I   C  +++D    L 
Sbjct: 325 STITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLL 384

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M   G+  N + +TTL+  F +  + +   +LL+ M    V P     + ++D L  N
Sbjct: 385 HEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDN 444



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 123/272 (45%), Gaps = 48/272 (17%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG + K    P  VT++T++ GLC E  + +A +LF QM      PNVVT+ +L++G C 
Sbjct: 136 FGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCR 191

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN----------RKMDEATRL----- 108
                EA  L   M++ GLQ + +T+  I+D +CK           RKM+E + +     
Sbjct: 192 EGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVV 251

Query: 109 ------LDLMIQGGVRPDAFCEI---------------NIVAYGCLIDGLCKIGKLKNAR 147
                    MI G      + E                ++V Y  LI+   K GK   A 
Sbjct: 252 IWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAE 311

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           EL   +   G++P+ +TY+  I   C   ++D A  +F  M  KG +P+ + F TL+  +
Sbjct: 312 ELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGY 371

Query: 208 IRKNETSKVIELLRSMDK----RNVMPYASIL 235
            R       I+LL  M +     N + Y +++
Sbjct: 372 CRAKRVDDGIKLLHEMTEAGLVANTITYTTLI 403



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 96/178 (53%), Gaps = 6/178 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +I GL  EG   +A+EL+ +M    I P+ +TYNS+IHG C  +  +EA  
Sbjct: 474 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQ 533

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +    +VVTF  +++  CK  ++D+   L   M + G+  +A      + Y  
Sbjct: 534 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA------ITYIT 587

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           LI G  K+G +  A ++ Q +  +G+ P+ +T    +  L + E++ +A  +  D+++
Sbjct: 588 LIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQM 645



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 17/238 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +  ++  + + G +D    L  +M+   +  N  ++  L+  FC  +    A   
Sbjct: 76  PSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALST 135

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F ++   G    VVTF+ ++  LC   ++ EA   LDL  Q        C+ N+V +  L
Sbjct: 136 FGKITKLGFHPTVVTFSTLLHGLCVEDRISEA---LDLFHQ-------MCKPNVVTFTTL 185

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKG 192
           ++GLC+ G++  A  L   +   GL PN +TY   +  +C       A +L   M EV  
Sbjct: 186 MNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSH 245

Query: 193 VAPNCVIF-----TTLMPSFIRKNETSKVIELLRSM-DKRNVMPYASILSIIVDLLVK 244
           + PN VI+     T ++  F      S+  +LL+ M +++ + P     + +++  VK
Sbjct: 246 IKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVK 303


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 125/216 (57%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +I+GL K   VD+A  LF +M  + I P+ VTYNSLI G C     + A  L
Sbjct: 337 PHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQL 396

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + G+ +D++T+N ++D LCKN  +D+A  L+  +   G++P  +       Y  L
Sbjct: 397 VDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMY------TYNIL 450

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+LKNA+++ Q L   G   N  TYNI I+ LC +   ++A  L   ME  G+
Sbjct: 451 IDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGI 510

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            P+ V + T++ +  RK+E  K  +LLR M  R ++
Sbjct: 511 IPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLL 546



 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 139/240 (57%), Gaps = 10/240 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G +   + V YN II+ LCK+  V  A +L+ +M  + I+P+VVT+NSLI GFC      
Sbjct: 192 GKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLK 251

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  LF EM+ + +  DV TF++++D LCK+  +  A  +L +M++ GV PD      +V
Sbjct: 252 EAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPD------VV 305

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ +  +++R G+ P+  +YNI I+ L   + +D+A  LF +M
Sbjct: 306 TYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEM 365

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI--IVDLLVKNE 246
             KG+AP+ V + +L+    +    S   +L+  M   N +P A IL+   ++D+L KN 
Sbjct: 366 CCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEM-HNNGIP-ADILTYNSLIDVLCKNH 423



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 132/268 (49%), Gaps = 41/268 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T++ ++D LCK+G + +AK +   M  + + P+VVTY+SL+ G+C  N+ N+A+++
Sbjct: 267 PDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHV 326

Query: 74  F------------------------IEMMD-----------RGLQSDVVTFNVIMDELCK 98
           F                        I+M+D           +G+  D VT+N ++D LCK
Sbjct: 327 FSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCK 386

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             ++  A +L+D M   G+  D      I+ Y  LID LCK   +  A  L + +   G+
Sbjct: 387 LGRISYAWQLVDEMHNNGIPAD------ILTYNSLIDVLCKNHHIDKAIALVKKIKDQGI 440

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P++ TYNI I  LC   ++  A D+F D+ +KG + N   +  ++    ++   ++   
Sbjct: 441 QPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEV 500

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKNE 246
           LL  M+   ++P A     I+  L + +
Sbjct: 501 LLSKMENNGIIPDAVTYETIIRALFRKD 528



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 14  PNTVTYNTIIDGLCKEG--FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           P+ V +N I+  + K        A  L  Q++ + I P +VT+N L++ +C+  +   A 
Sbjct: 55  PSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAF 114

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +++  G     +TFN +++ +C N K+ EA    D +I  G   D       V+Y 
Sbjct: 115 SIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQ------VSYR 168

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCKIG+ + A ++ + +    +  +VV YNI I++LC D+ +  A+ L+ +M  K
Sbjct: 169 TLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITK 228

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            ++P+ V F +L+  F    +  +   L   M  +N+ P     SI+VD L K+
Sbjct: 229 RISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKD 282



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 61/105 (58%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +IDGLCK G +  A+++F  +  +  + N  TYN +I+G C     NEAE 
Sbjct: 441 QPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEV 500

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           L  +M + G+  D VT+  I+  L +  + ++A +LL  MI  G+
Sbjct: 501 LLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGL 545


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 128/266 (48%), Gaps = 41/266 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT N++IDGLCK   +DKA+ +  QM DE+I PN  TYNSLIHG+  +    EA  +
Sbjct: 154 PNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRI 213

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   G + +VVT+N+++D LCK+    EA  + + MIQ G +PDA        YG L
Sbjct: 214 LKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDA------TTYGSL 267

Query: 134 IDG-----------------------------------LCKIGKLKNARELSQSLTRAGL 158
           + G                                    CK G+L  A      + + G 
Sbjct: 268 LHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGF 327

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           MP++VTY   I  LC   ++D A   F  M   G++PN + FTTL+  F    +  K  E
Sbjct: 328 MPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEE 387

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           L   M  R + P  +I + ++D L K
Sbjct: 388 LFYEMMDRGIPPDVTIFTAMIDRLFK 413



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 128/229 (55%), Gaps = 14/229 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN +ID LCK GF  +A+E+F  M      P+  TY SL+HG  YA +GN  E 
Sbjct: 223 RPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHG--YATEGNLVEM 280

Query: 73  LFIE--MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             ++  M+  G++S+  TF++ +   CK  ++DEA+     M Q G  PD      IV Y
Sbjct: 281 NNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPD------IVTY 334

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGLCKIG+L +A      +   GL PN++T+   IH      + +KA +LF +M  
Sbjct: 335 TTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMD 394

Query: 191 KGVAPNCVIFTTLMPSFIRKN---ETSKVIELL-RSMDKRNVMPYASIL 235
           +G+ P+  IFT ++    ++    E  K+ +L+ R+  K NV+ Y +++
Sbjct: 395 RGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMI 443



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 22/210 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY T+IDGLCK G +D A   F QM D+ ++PN++T+ +LIHGF       +AE L
Sbjct: 329 PDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEEL 388

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EMMDRG+  DV  F  ++D L K  K+ EA +L DLM + G +P      N+V+Y  +
Sbjct: 389 FYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKP------NVVSYNTM 442

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G    G++    +L   +   GL P  VT+N  +  + +                 G+
Sbjct: 443 IHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVS----------------MGL 486

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+     TL+ S         ++ L R M
Sbjct: 487 KPDVDTCKTLIDSCCEDGRIEDILTLFREM 516



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 8/198 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD--ENINPNVVTYNSLIHGFCYANDGNE 69
           C P+  +Y+T++ GLC E   ++A EL   M +  +N  P+VV+Y+++IHGF    D  +
Sbjct: 80  CTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGK 139

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  LF +M+D G+  +VVT N ++D LCK + MD+A  +L  MI   + P      N   
Sbjct: 140 AYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMP------NCTT 193

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI G    G+   A  + + ++R G  PNVVTYN+ I  LC      +A ++F  M 
Sbjct: 194 YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMI 253

Query: 190 VKGVAPNCVIFTTLMPSF 207
             G  P+   + +L+  +
Sbjct: 254 QSGPKPDATTYGSLLHGY 271



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 112/244 (45%), Gaps = 5/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+  +I   C  G ++       Q+    +  + V +  L+   C     ++A  +
Sbjct: 11  PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDAMNI 70

Query: 74  FIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M + G   DV +++ ++  LC  +K +EA  L+ +M + G      C  ++V+Y  
Sbjct: 71  VLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDN----CPPDVVSYST 126

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G  K G +  A  L   +   G+ PNVVT N  I  LC  + MDKA  +   M  + 
Sbjct: 127 VIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEH 186

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + PNC  + +L+  ++   + ++ + +L+ M +    P     ++++D L K+     + 
Sbjct: 187 IMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAR 246

Query: 253 PQFN 256
             FN
Sbjct: 247 EIFN 250



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 19/130 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   +  +ID L KEG V +A++LF  M      PNVV+YN++IHG+  A +  E   L
Sbjct: 399 PDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKL 458

Query: 74  FIEMM-------------------DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
             +M+                     GL+ DV T   ++D  C++ ++++   L   M+ 
Sbjct: 459 LDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLG 518

Query: 115 GGVRPDAFCE 124
              + D   E
Sbjct: 519 KADKTDTITE 528


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 6/237 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +G  C PN + YNT+IDG CK+G ++ A  LF+++K +   P V TY ++I+GFC   D 
Sbjct: 231 WGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDF 290

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
              + L +EM  RGL  +V  +N I+D   K+  + +A   ++ MI+ G +PD      I
Sbjct: 291 KAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPD------I 344

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI G C+ GK+  A +L +     GLMPN  +Y   IHA C     D+A +  ++
Sbjct: 345 VTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIE 404

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M  +G  P+ V +  L+   +   E    + +   M +R V P A I +I++  L K
Sbjct: 405 MTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCK 461



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 116/260 (44%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +Y  +I   CK+G  D+A    ++M +    P++VTY +L+HG   A + + A  +
Sbjct: 377 PNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTI 436

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI-------- 125
             +M++RG+  D   +N++M  LCK  K+  A  LL  M+   V PDAF           
Sbjct: 437 REKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIR 496

Query: 126 ---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                 IV Y  +I G CK G +K+A      + +  L P+  T
Sbjct: 497 NGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFT 556

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+  I        +D A  +F +M      PN V +T+L+  F RK +  + +++ R M 
Sbjct: 557 YSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQ 616

Query: 225 KRNVMPYASILSIIVDLLVK 244
              ++P     SI++    K
Sbjct: 617 ACGLVPNVVTYSILIGSFCK 636



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 95/205 (46%), Gaps = 20/205 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+T+IDG  K+  +D A+++F +M      PNVVTY SLI+GFC   D + +  +
Sbjct: 552 PDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKI 611

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   GL  +VVT+++++   CK  K+ +A    + M+     P      N V +  L
Sbjct: 612 FREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVP------NDVTFNYL 665

Query: 134 IDGLCKIG------KLKNARELSQS--------LTRAGLMPNVVTYNITIHALCNDEQMD 179
           ++G  K G      K    +E  QS        +   G  P    YN  +  LC      
Sbjct: 666 VNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFR 725

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLM 204
            A  L   M  KG  P+ V F  L+
Sbjct: 726 TALQLSNKMTSKGCIPDSVSFVALL 750



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 20/176 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN VTY ++I+G C++G + ++ ++F +M+   + PNVVTY+ LI  FC      +A 
Sbjct: 585 CKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAA 644

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKN--RKMDEAT------------RLLDLMIQGGV 117
             F EM+      + VTFN +++   KN  R + E                   MI  G 
Sbjct: 645 SFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGW 704

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
            P +       AY  ++  LC+ G  + A +LS  +T  G +P+ V++   +H +C
Sbjct: 705 APRS------AAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVC 754



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 110/234 (47%), Gaps = 7/234 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG---NEAE 71
           N   Y++++  L +     + + +   M+ E ++P     + +I    Y++ G      E
Sbjct: 93  NGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQA--YSDSGLVEKALE 150

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +  +       DV+  N +++ L K  +++ A +L D M++     D  C ++  +  
Sbjct: 151 LYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDR-C-VDNYSTC 208

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLCK GKL+  R+L +     G +PN++ YN  I   C    M+ A+ LF+++++K
Sbjct: 209 IMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLK 268

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  P    +  ++  F +K +   +  LL  M+ R +     + + I+D   K+
Sbjct: 269 GFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKH 322


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 6/238 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +G  C PN + YNT+IDG CK+G ++ A  LF+++K +   P V TY ++I+GFC   D 
Sbjct: 212 WGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDF 271

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
              + L +EM  RGL  +V  +N I+D   K+  + +A   ++ MI+ G +PD      I
Sbjct: 272 KAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPD------I 325

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI G C+ GK+  A +L +     GLMPN  +Y   IHA C     D+A +  ++
Sbjct: 326 VTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIE 385

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           M  +G  P+ V +  L+   +   E    + +   M +R V P A I +I++  L K 
Sbjct: 386 MTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKK 443



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +Y  +I   CK+G  D+A    ++M +    P++VTY +L+HG   A + + A  +
Sbjct: 358 PNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTI 417

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++RG+  D   +N++M  LCK  K+  A  LL  M+   V PDAF       Y  L
Sbjct: 418 REKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAF------VYATL 471

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  + G L  AR+L +     G+ P +V YN  I   C    M  A      M+ + +
Sbjct: 472 VDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHL 531

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           AP+   ++T++  ++++++     ++ R M K    P
Sbjct: 532 APDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKP 568



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ VTYNT+I G C++G V +A +L  Q   + + PN  +Y  LIH +C     + A 
Sbjct: 321 CKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRAS 380

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
              IEM +RG + D+VT+  ++  L    ++D A  + + M++ GV PDA        Y 
Sbjct: 381 NWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGI------YN 434

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK  KL  A+ L   +    ++P+   Y   +     +  +D+A  LF     K
Sbjct: 435 ILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEK 494

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G+ P  V +  ++  + +       +  +  M KR++ P     S ++D  VK  
Sbjct: 495 GMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQH 549



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 6/184 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY  ++ GL   G VD A  +  +M +  + P+   YN L+ G C       A+ 
Sbjct: 392 KPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKL 451

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+D+ +  D   +  ++D   +N  +DEA +L +L I+ G+ P       IV Y  
Sbjct: 452 LLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNP------GIVGYNA 505

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G CK G +K+A      + +  L P+  TY+  I        +D A  +F +M    
Sbjct: 506 MIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMK 565

Query: 193 VAPN 196
             PN
Sbjct: 566 CKPN 569



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 6/150 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN ++ GLCK+  +  AK L  +M D+++ P+   Y +L+ GF    + +EA  L
Sbjct: 428 PDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKL 487

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F   +++G+   +V +N ++   CK   M +A   ++ M +  + PD F       Y  +
Sbjct: 488 FELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEF------TYSTV 541

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           IDG  K   L  A+++ + + +    PNV+
Sbjct: 542 IDGYVKQHDLDGAQKMFREMVKMKCKPNVM 571



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 26/234 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG---NEAE 71
           N   Y++++  L +     + + +   M+ E ++P     + +I    Y++ G      E
Sbjct: 93  NGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQA--YSDSGLVEKALE 150

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +  +       DV+  N +++ L K  +++ A +   +M++G                
Sbjct: 151 LYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKFTCIMVKG---------------- 194

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
                LCK GKL+  R+L +     G +PN++ YN  I   C    M+ A+ LF+++++K
Sbjct: 195 -----LCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLK 249

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  P    +  ++  F +K +   +  LL  M+ R +     + + I+D   K+
Sbjct: 250 GFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKH 303


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 130/233 (55%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y+ IIDGLCK+G +D A  LF +M+ +    +++TYN+LI GFC A   ++   
Sbjct: 260 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAK 319

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  +VVTF+V++D   K  K+ EA +LL  M+Q G+ P      N + Y  
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP------NTITYNS 373

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK  +L+ A ++   +   G  P+++T+NI I+  C   ++D   +LF +M ++G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V  N V + TL+  F +  +     +L + M  R V P      I++D L  N
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDN 486



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TV +NT+++GLC E  V +A EL  +M +    P ++T N+L++G C     ++A  
Sbjct: 155 EPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVV 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M++ G Q + VT+  +++ +CK+ +   A  LL  M +  ++ DA      V Y  
Sbjct: 215 LIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDA------VKYSI 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK G L NA  L   +   G   +++TYN  I   CN  + D    L  DM  + 
Sbjct: 269 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++PN V F+ L+ SF+++ +  +  +LL+ M +R + P     + ++D   K
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +T+N +I+G CK   +D   ELF +M    +  N VTYN+L+ GFC +     A+
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ R ++ D+V++ +++D LC N ++++A     L I G +      E++I  Y 
Sbjct: 459 KLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKA-----LEIFGKIEKSKM-ELDIGIYM 512

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C   K+ +A +L  SL   G+  +   YNI I  LC  + + KA  LF  M  +
Sbjct: 513 IIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEE 572

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           G AP+ + +  L+ + +  ++ +   EL+  M         S + +++++L   E+
Sbjct: 573 GHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGEL 628



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY  +++ +CK G    A EL  +M++ NI  + V Y+ +I G C     + A  
Sbjct: 225 QPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFN 284

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  +G ++D++T+N ++   C   + D+  +LL  MI+  + P      N+V +  
Sbjct: 285 LFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP------NVVTFSV 338

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K GKL+ A +L + + + G+ PN +TYN  I   C + ++++A  +   M  KG
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             P+ + F  L+  + + N     +EL R M  R V+ 
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIA 436



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 117/260 (45%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N +   + K    +    L  QM+ + I  ++ T + +I+ FC     + A   
Sbjct: 86  PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC- 123
             ++M  G + D V FN +++ LC   ++ EA  L+D M++ G +P         +  C 
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query: 124 -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                              + N V YG +++ +CK G+   A EL + +    +  + V 
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+I I  LC D  +D A +LF +ME+KG   + + + TL+  F          +LLR M 
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 225 KRNVMPYASILSIIVDLLVK 244
           KR + P     S+++D  VK
Sbjct: 326 KRKISPNVVTFSVLIDSFVK 345



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 6/225 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
            D A +LF  M      P V+ +N L               L  +M  +G+   + T ++
Sbjct: 69  ADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSI 128

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C+ RK+  A   +  +++ G  PD       V +  L++GLC   ++  A EL  
Sbjct: 129 MINCFCRCRKLSYAFSTMGKIMKLGYEPDT------VIFNTLLNGLCLECRVSEALELVD 182

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  P ++T N  ++ LC + ++  A  L   M   G  PN V +  ++    +  
Sbjct: 183 RMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSG 242

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           +T+  +ELLR M++RN+   A   SII+D L K+    N+   FN
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 287


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CKEG ++ A E+  +M    + PNVV YN+++ G C A    EAE
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE 341

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +    D VTFN+++D  C+N  +D    LL+ M+  G  PD      ++ Y 
Sbjct: 342 ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD------VITYT 395

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L +S++  G  PN V+Y I +  LC+  +   A +L   M  +
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  PN V F TL+    +K    + IELL+ M      P     S ++D L K
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 6/237 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG +D+A  L   M      PN V+Y  ++ G C A    +AE
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G   + VTFN +++ LCK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD------LISYS 500

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK + A EL   +   G+ PN + Y+    AL  + +++K   +F +++  
Sbjct: 501 TVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDT 560

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            +  + V++  ++ S  ++ ET + I+    M     MP  S  ++++  L    ++
Sbjct: 561 TIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T   N +++ +C++G VD+A  L  ++       ++V+YN+++ G C A    + E
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      ++VTFN ++  LC+N   +    +L  M + G  PD      I  Y 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD------IRMYA 290

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG+CK G L+ A E+   +   GL PNVV YN  +  LC+ E+  +A +L  +M  K
Sbjct: 291 TIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQK 350

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
               + V F  L+  F +     +VIELL  M     MP     + +++   K
Sbjct: 351 DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCK 403



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTV+Y  ++ GLC  G    A+EL  QM  +   PN VT+N+LI+  C      +A 
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  G   D+++++ ++D L K  K +EA  LL++M+  G+ P      N + Y 
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP------NTIIYS 535

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +   L + G++    ++  ++    +  + V YN  I +LC   + D+A D F  M   
Sbjct: 536 SIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSN 595

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  PN   +T L+     +    +  ELL  +  R  +
Sbjct: 596 GCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 14/228 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+  ++ GLC  G +  A E+  +M  +   P    Y+ ++   C +     +  +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--CEINIVAYG 131
              M  +G   D    N++++ +C+   +DEA  LL        R  AF  CE +IV+Y 
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLL--------RKLAFFGCEADIVSYN 220

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLC   +  +  EL   + R    PN+VT+N  I  LC +   ++ H++   M   
Sbjct: 221 AVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEH 280

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
           G  P+  ++ T++    ++       E+L  M     K NV+ Y ++L
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 105/234 (44%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P    Y+ I++  C+ G    +  +   M  +    +    N +++  C     +EA 
Sbjct: 142 CAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAV 201

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++   G ++D+V++N ++  LC  ++  +   L+D M    VR D  C  NIV + 
Sbjct: 202 GLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEM----VRVD--CAPNIVTFN 255

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G  +   E+   ++  G  P++  Y   I  +C +  ++ A+++   M   
Sbjct: 256 TLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSY 315

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN V + T++          +  ELL  M +++        +I+VD   +N
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQN 369



 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +VAY  ++ G C+ G+L  AR L+ ++    + PN  T+   +  LC   ++  A ++  
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           +M  KG AP   ++  ++ +  R       + +L +M  + 
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 129/239 (53%), Gaps = 12/239 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+ID LCK G +++A+ L   M      PNVVTY+ LI+G C     +EA  L
Sbjct: 114 PDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEAREL 173

Query: 74  FIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR--PDAFCEINIVA 129
             EM  +   +  +++T+N  +D LCK     EA  L+  +  G +R  PD       V 
Sbjct: 174 IQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT------VT 227

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LIDGLCK G+   A   +  +   G +PNVVTYN  ++ LC  ++M++AH +   M 
Sbjct: 228 FSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMV 285

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            KGV P+ + ++ L+ +F + +   + +ELL  M  R   P     + I+D L K++ S
Sbjct: 286 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRS 344



 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 131/232 (56%), Gaps = 12/232 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYANDGNE 69
           C PN VTY+ +I+GLCK G +D+A+EL  +M  K  ++ PN++TYNS + G C  +   E
Sbjct: 147 CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAE 206

Query: 70  AEYLFIEMMDRGLQ--SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           A  L   + D  L+   D VTF+ ++D LCK  + DEA    D MI GG  P      N+
Sbjct: 207 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVP------NV 258

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  L++GLCK  K++ A  + +S+   G+ P+V+TY++ + A C   ++D+A +L   
Sbjct: 259 VTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG 318

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           M  +G  PN V F +++    + + + +  ++   +  R ++P     +I++
Sbjct: 319 MASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILI 370



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 121/219 (55%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+N+IIDGLCK     +A ++ LQ+ +  + P+ VT+N LI G C A +  +A 
Sbjct: 324 CTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQAS 383

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ + +Q DV+TF  ++D LCK  +++ A  +LDLM   GV P      N+V Y 
Sbjct: 384 ALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP------NVVTYN 437

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK G+++   E  + +  +G +P  +TY   ++ALC   + D A  L   ++  
Sbjct: 438 VLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSF 497

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G  P+ V +  L+    +  +T + I +L  M  +   P
Sbjct: 498 GWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQP 536



 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 135/261 (51%), Gaps = 29/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN +++GLCK   +++A  +   M D+ + P+V+TY+ L+  FC A+  +EA  L
Sbjct: 256 PNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALEL 315

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL---------------LDLMIQGGVR 118
              M  RG   +VVTFN I+D LCK+ +  EA ++                +++I G  +
Sbjct: 316 LHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACK 375

Query: 119 PDAF--------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
              F               + +++ +G LIDGLCK G+++ AR++   +   G+ PNVVT
Sbjct: 376 AGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVT 435

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN+ +H LC   ++++  +   +M   G  P  + + +L+ +  R + T   ++L+  + 
Sbjct: 436 YNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLK 495

Query: 225 KRNVMPYASILSIIVDLLVKN 245
                P     +I+VD L K+
Sbjct: 496 SFGWDPDTVTYNILVDGLWKS 516



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 114/203 (56%), Gaps = 11/203 (5%)

Query: 19  YNTIIDGLCKEGFVDKAKELFL-QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           YN ++  LC+ G   +A E+F  +M  + + P +VTYN++I+G C +N+      LF E+
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           + RG   DVVT+N ++D LCK   ++EA RL   M   G  P      N+V Y  LI+GL
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVP------NVVTYSVLINGL 161

Query: 138 CKIGKLKNARELSQSLTRAG--LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG--V 193
           CK+G++  AREL Q +TR    ++PN++TYN  +  LC      +A +L   +      V
Sbjct: 162 CKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV 221

Query: 194 APNCVIFTTLMPSFIRKNETSKV 216
           +P+ V F+TL+    +  +T + 
Sbjct: 222 SPDTVTFSTLIDGLCKCGQTDEA 244



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 8/240 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+  +   P+TVT++T+IDGLCK G  D+A      M      PNVVTYN+L++G C A+
Sbjct: 215 RDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKAD 272

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A  +   M+D+G+  DV+T++V++D  CK  ++DEA  LL  M   G  P      
Sbjct: 273 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP------ 326

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+V +  +IDGLCK  +   A +++  +    L+P+ VT+NI I   C     ++A  LF
Sbjct: 327 NVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALF 386

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M  K + P+ + F  L+    +  +     ++L  M    V P     +++V  L K+
Sbjct: 387 EEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKS 446



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 6/151 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN ++ GLCK G +++  E   +M      P  +TY SL++  C A+  ++A  L
Sbjct: 431 PNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQL 490

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++   G   D VT+N+++D L K+ K ++A  +L+ M+  G +PD+F       +   
Sbjct: 491 VSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSF------TFAAC 544

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
             GL + G L    EL + +   G++P+  T
Sbjct: 545 FGGLHRSGNLAGTMELLRVVLAKGMLPDATT 575



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P ++TY +++  LC+    D A +L  ++K    +P+ VTYN L+ G   +    +A 
Sbjct: 464 CVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAI 523

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            +  EM+ +G Q D  TF      L ++  +     LL +++  G+ PDA
Sbjct: 524 TVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDA 573



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQS-LTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           ++  Y  ++  LC+ G+   A E+ +  + R G+ P +VTYN  I+ LC   ++    +L
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMEL 103

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F ++  +G  P+ V + TL+ S  +  +  +   L   M  R  +P     S++++ L K
Sbjct: 104 FEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCK 163


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYN +ID LC  G +++A  L  +M+    + NVVTYN+LI GFC      EAE
Sbjct: 452 CHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAE 511

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM  +G+  +VVT+N ++D LCKNR+++EA +L+D M+  G++PD F       Y 
Sbjct: 512 EIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKF------TYN 565

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G +K A ++ Q++T  G  P+ VTY   I  L    +++ A  L   +++K
Sbjct: 566 SLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLK 625

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+      +  ++ +  R+  TS+ + L R M ++   P A    ++
Sbjct: 626 GMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVV 672



 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 120/217 (55%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVTYNT+I  LCKE  V++A EL   +  + I P+V T+NSLI G C  N+   A  L
Sbjct: 384 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMEL 443

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  +G   D  T+N+++D LC   +++EA  LL  M   G      C  N+V Y  L
Sbjct: 444 FEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG------CSRNVVTYNTL 497

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +++ A E+   +   G+  NVVTYN  I  LC + ++++A  L   M ++G+
Sbjct: 498 IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGL 557

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+   + +L+  F R  +  K  +++++M      P
Sbjct: 558 KPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEP 594



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 14/237 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+N++++GLC+ G V  A E+   M  E  +P++ TYNSLI G C   +  EA  
Sbjct: 313 RPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVE 372

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+ R    + VT+N ++  LCK  +++EAT L  ++   G+ PD      +  +  
Sbjct: 373 ILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD------VCTFNS 426

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC     + A EL + +   G  P+  TYN+ I +LC+  ++++A  L  +ME  G
Sbjct: 427 LIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG 486

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASILSIIVDLLVKN 245
            + N V + TL+  F +     +  E+   M+     RNV+ Y    + ++D L KN
Sbjct: 487 CSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTY----NTLIDGLCKN 539



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VT N ++ G CKEG +++      +M +E   P+  T+NSL++G C       A 
Sbjct: 277 CPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHAL 336

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G   D+ T+N ++  LCK  +++EA  +L+ MI     P      N V Y 
Sbjct: 337 EILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSP------NTVTYN 390

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LCK  +++ A EL++ LT  G++P+V T+N  I  LC       A +LF +M+ K
Sbjct: 391 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTK 450

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
           G  P+   +  L+ S   +    + + LL+ M+     RNV+ Y +++
Sbjct: 451 GCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLI 498



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T+N +I  LC+   +  A  +  +M    ++P+  T+ +L+ GF    + N A  
Sbjct: 208 KPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALR 267

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G  S  VT NV++   CK  +++E    +D M   G RPD F       +  
Sbjct: 268 IREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRF------TFNS 321

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLC+IG +K+A E+   + + G  P++ TYN  I  LC   ++++A ++   M ++ 
Sbjct: 322 LVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRD 381

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +PN V + TL+ +  ++N+  +  EL R +  + ++P
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP 419



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+ T++ G  +EG ++ A  +  QM       + VT N L+HG+C      E    
Sbjct: 244 PDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSF 303

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + G + D  TFN +++ LC+   +  A  +LD+M+Q G  PD F       Y  L
Sbjct: 304 IDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIF------TYNSL 357

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK+G+++ A E+   +      PN VTYN  I  LC + Q+++A +L   +  KG+
Sbjct: 358 IFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 417

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            P+   F +L+      N     +EL   M  +   P     ++++D L
Sbjct: 418 LPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSL 466



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 8/212 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELF-LQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P   T   + D L ++   D   +L     K  N  P+ V Y  ++              
Sbjct: 67  PQNFTPKQLRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRR 126

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYG 131
           +  EM   G +    TF ++++   K    DEA  ++D+M +  G++ DAF       Y 
Sbjct: 127 VLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAF------TYN 180

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++ L    KLK    ++  +   G+ P+V T+NI I ALC   Q+  A  +  +M   
Sbjct: 181 FLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSY 240

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G++P+   FTTLM  FI +   +  + +   M
Sbjct: 241 GLSPDEKTFTTLMQGFIEEGNMNGALRIREQM 272



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 11/132 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           C+P++VTY T+I GL K G V+ A  L   +Q+K   + P   TYN +I         +E
Sbjct: 592 CEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQ--TYNPVIKALFREKRTSE 649

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           A  LF EMM++G   D VT+ V+   LC     + EA   L  M   G  PD        
Sbjct: 650 AVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPD------FS 703

Query: 129 AYGCLIDGLCKI 140
           ++  L +GLC +
Sbjct: 704 SFLMLAEGLCAL 715


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CKEG ++ A E+  +M    + PNVV YN+++ G C A    EAE
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE 341

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +    D VTFN+++D  C+N  +D    LL+ M+  G  PD      ++ Y 
Sbjct: 342 ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD------VITYT 395

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L +S++  G  PN V+Y I +  LC+  +   A +L   M  +
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  PN V F TL+    +K    + IELL+ M      P     S ++D L K
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 6/237 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG +D+A  L   M      PN V+Y  ++ G C A    +AE
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G   + VTFN +++ LCK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD------LISYS 500

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK + A EL   +   G+ PN + Y+    AL  + +++K   +F +++  
Sbjct: 501 TVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDT 560

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            +  + V++  ++ S  ++ ET + I+    M     MP  S  ++++  L    ++
Sbjct: 561 TIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T   N +++ +C++G VD+A  L  ++       ++V+YN+++ G C A    + E
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      ++VTFN ++  LC+N   +    +L  M + G  PD      I  Y 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD------IRMYA 290

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG+CK G L+ A E+   +   GL PNVV YN  +  LC+ E+  +A +L  +M  K
Sbjct: 291 TIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQK 350

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
               + V F  L+  F +     +VIELL  M     MP
Sbjct: 351 DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTV+Y  ++ GLC  G    A+EL  QM  +   PN VT+N+LI+  C      +A 
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  G   D+++++ ++D L K  K +EA  LL++M+  G+ P      N + Y 
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP------NTIIYS 535

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +   L + G++    ++  ++    +  + V YN  I +LC   + D+A D F  M   
Sbjct: 536 SIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSN 595

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  PN   +T L+     +    +  ELL  +  R  +
Sbjct: 596 GCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 14/228 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+  ++ GLC  G +  A E+  +M  +   P    Y+ ++   C +     +  +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--CEINIVAYG 131
              M  +G   D    N++++ +C+   +DEA  LL        R  AF  CE +IV+Y 
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLL--------RKLAFFGCEADIVSYN 220

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLC   +  +  EL   + R    PN+VT+N  I  LC +   ++ H++   M   
Sbjct: 221 AVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEH 280

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
           G  P+  ++ T++    ++       E+L  M     K NV+ Y ++L
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 105/234 (44%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P    Y+ I++  C+ G    +  +   M  +    +    N +++  C     +EA 
Sbjct: 142 CAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAV 201

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++   G ++D+V++N ++  LC  ++  +   L+D M    VR D  C  NIV + 
Sbjct: 202 GLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEM----VRVD--CAPNIVTFN 255

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G  +   E+   ++  G  P++  Y   I  +C +  ++ A+++   M   
Sbjct: 256 TLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSY 315

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN V + T++          +  ELL  M +++        +I+VD   +N
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQN 369



 Score = 37.0 bits (84), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +VAY  ++ G C+ G+L  AR L+ ++    + PN  T+   +  LC   ++  A ++  
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           +M  KG AP   ++  ++ +  R       + +L +M  + 
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 130/245 (53%), Gaps = 6/245 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+N +I+ LC++G + +A ++  +M      PN ++YN L+HGFC       A 
Sbjct: 185 CSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAI 244

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               +M  RG   D+VT+N ++  LCK+ K+D A  LL+ +   G  P       ++ Y 
Sbjct: 245 EYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSP------VLITYN 298

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K+GK   A +L   +   GL P+++TY+  +  L  + ++D+A   F D+EV 
Sbjct: 299 TVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVL 358

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           GV PN + +  +M    +  +T + I+ L  M +R   P  +  +I+++ L    ++  +
Sbjct: 359 GVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEA 418

Query: 252 IPQFN 256
           +   N
Sbjct: 419 LELLN 423



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 6/230 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+++YN ++ G CKE  +++A E   +M      P++VTYN+L+   C     + A 
Sbjct: 220 CTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAV 279

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++  +G    ++T+N ++D L K  K D+A +LLD M   G++PD      I+ Y 
Sbjct: 280 ELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPD------IITYS 333

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GL + GK+  A +    L   G+ PN +TYN  +  LC   + D+A D    M  +
Sbjct: 334 SLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQR 393

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           G  P    +T L+     +    + +ELL  +  R V+  +S   + V +
Sbjct: 394 GCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKSSAEKVAVRM 443



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +   ++I G CK G   KA  +   ++D    P+V+TYN LI G C      +AE L
Sbjct: 117 PDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKL 176

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ RG    VVTFN++++ LC+   +  A  +L+ M      P   C  N ++Y  L
Sbjct: 177 LADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKM------PKHGCTPNSLSYNPL 230

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK  K++ A E    +T  G  P++VTYN  + ALC D ++D A +L   +  KG 
Sbjct: 231 LHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGC 290

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           +P  + + T++    +  +T +  +LL  M  + + P    Y+S++ 
Sbjct: 291 SPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVG 337



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 100/196 (51%), Gaps = 6/196 (3%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P+++   SLI GFC      +A  +   + D G   DV+T+NV++  +C   +  +A +L
Sbjct: 117 PDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKL 176

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           L  M++ G  P      ++V +  LI+ LC+ G L  A ++ + + + G  PN ++YN  
Sbjct: 177 LADMVRRGCSP------SVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPL 230

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           +H  C +++M++A +    M  +G  P+ V + TL+ +  +  +    +ELL  +  +  
Sbjct: 231 LHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGC 290

Query: 229 MPYASILSIIVDLLVK 244
            P     + ++D L K
Sbjct: 291 SPVLITYNTVIDGLSK 306



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 69  EAEYLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           E  + F+E M+ RG   D++    ++   CK  K  +ATR+++++   G  PD      +
Sbjct: 101 EEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPD------V 154

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + Y  LI G+C  G+  +A +L   + R G  P+VVT+NI I+ LC    + +A D+   
Sbjct: 155 ITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEK 214

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M   G  PN + +  L+  F ++ +  + IE L  M  R   P
Sbjct: 215 MPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYP 257


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CKEG ++ A E+  +M    + PNVV YN+++ G C A    EAE
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE 341

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +    D VTFN+++D  C+N  +D    LL+ M+  G  PD      ++ Y 
Sbjct: 342 ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD------VITYT 395

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L +S++  G  PN V+Y I +  LC+  +   A +L   M  +
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  PN V F TL+    +K    + IELL+ M      P     S ++D L K
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 6/237 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG +D+A  L   M      PN V+Y  ++ G C A    +AE
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G   + VTFN +++ LCK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD------LISYS 500

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK + A EL   +   G+ PN + Y+    AL  + +++K   +F +++  
Sbjct: 501 TVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDT 560

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            +  + V++  ++ S  ++ ET + I+    M     MP  S  ++++  L    ++
Sbjct: 561 TIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T   N +++ +C++G VD+A  L  ++       ++V+YN+++ G C A    + E
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      ++VTFN ++  LC+N   +    +L  M + G  PD      I  Y 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD------IRMYA 290

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG+CK G L+ A E+   +   GL PNVV YN  +  LC+ E+  +A +L  +M  K
Sbjct: 291 TIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQK 350

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
               + V F  L+  F +     +VIELL  M     MP
Sbjct: 351 DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTV+Y  ++ GLC  G    A+EL  QM  +   PN VT+N+LI+  C      +A 
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  G   D+++++ ++D L K  K +EA  LL++M+  G+ P      N + Y 
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP------NTIIYS 535

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +   L + G++    ++  ++    +  + V YN  I +LC   + D+A D F  M   
Sbjct: 536 SIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSN 595

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  PN   +T L+     +    +  ELL  +  R  +
Sbjct: 596 GCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 14/228 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+  ++ GLC  G +  A E+  +M  +   P    Y+ ++   C +     +  +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--CEINIVAYG 131
              M  +G   D    N++++ +C+   +DEA  LL        R  AF  CE +IV+Y 
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLL--------RKLAFFGCEADIVSYN 220

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLC   +  +  EL   + R    PN+VT+N  I  LC +   ++ H++   M   
Sbjct: 221 AVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEH 280

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
           G  P+  ++ T++    ++       E+L  M     K NV+ Y ++L
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 105/234 (44%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P    Y+ I++  C+ G    +  +   M  +    +    N +++  C     +EA 
Sbjct: 142 CAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAV 201

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++   G ++D+V++N ++  LC  ++  +   L+D M    VR D  C  NIV + 
Sbjct: 202 GLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEM----VRVD--CAPNIVTFN 255

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G  +   E+   ++  G  P++  Y   I  +C +  ++ A+++   M   
Sbjct: 256 TLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSY 315

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN V + T++          +  ELL  M +++        +I+VD   +N
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQN 369



 Score = 37.0 bits (84), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +VAY  ++ G C+ G+L  AR L+ ++    + PN  T+   +  LC   ++  A ++  
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           +M  KG AP   ++  ++ +  R       + +L +M  + 
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CKEG ++ A E+  +M    + PNVV YN+++ G C A    EAE
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE 341

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +    D VTFN+++D  C+N  +D    LL+ M+  G  PD      ++ Y 
Sbjct: 342 ELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPD------VITYT 395

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L +S++  G  PN V+Y I +  LC+  +   A +L   M  +
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  PN V F TL+    +K    + IELL+ M      P     S ++D L K
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 6/237 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG +D+A  L   M      PN V+Y  ++ G C A    +AE
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G   + VTFN +++ LCK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD------LISYS 500

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK + A EL   +   G+ PN + Y+    AL  + +++K   +F +++  
Sbjct: 501 TVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDT 560

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            +  + V++  ++ S  ++ ET + I+    M     MP  S  ++++  L    ++
Sbjct: 561 TIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLA 617



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T   N +++ +C++G VD+A  L  ++       ++V+YN+++ G C A    + E
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      ++VTFN ++  LC+N   +    +L  M + G  PD      I  Y 
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD------IRMYA 290

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG+CK G L+ A E+   +   GL PNVV YN  +  LC+ E+  +A +L  +M  K
Sbjct: 291 TIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQK 350

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
               + V F  L+  F +     +VIELL  M     MP
Sbjct: 351 DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTV+Y  ++ GLC  G    A+EL  QM  +   PN VT+N+LI+  C      +A 
Sbjct: 422 CKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 481

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  G   D+++++ ++D L K  K +EA  LL++M+  G+ P      N + Y 
Sbjct: 482 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP------NTIIYS 535

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +   L + G++    ++  ++    +  + V YN  I +LC   + D+A D F  M   
Sbjct: 536 SIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSN 595

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  PN   +T L+     +    +  ELL  +  R  +
Sbjct: 596 GCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGAL 633



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 14/228 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+  ++ GLC  G +  A E+  +M  +   P    Y+ ++   C +     +  +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--CEINIVAYG 131
              M  +G   D    N++++ +C+   +DEA  LL        R  AF  CE +IV+Y 
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLL--------RKLAFFGCEADIVSYN 220

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLC   +  +  EL   + R    PN+VT+N  I  LC +   ++ H++   M   
Sbjct: 221 AVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEH 280

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
           G  P+  ++ T++    ++       E+L  M     K NV+ Y ++L
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 105/234 (44%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P    Y+ I++  C+ G    +  +   M  +    +    N +++  C     +EA 
Sbjct: 142 CAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAV 201

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++   G ++D+V++N ++  LC  ++  +   L+D M    VR D  C  NIV + 
Sbjct: 202 GLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEM----VRVD--CAPNIVTFN 255

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G  +   E+   ++  G  P++  Y   I  +C +  ++ A+++   M   
Sbjct: 256 TLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSY 315

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN V + T++          +  ELL  M +++        +I+VD   +N
Sbjct: 316 GLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQN 369



 Score = 37.0 bits (84), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +VAY  ++ G C+ G+L  AR L+ ++    + PN  T+   +  LC   ++  A ++  
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           +M  KG AP   ++  ++ +  R       + +L +M  + 
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CKEG +  A E+  +M    + PNVV YN+L+ G C A    E E
Sbjct: 293 CTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETE 352

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM D+    D VTFN+++D  C+N  +D    LL+ M+  G  PD      ++ Y 
Sbjct: 353 ELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPD------VITYT 406

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L +S+T  G  PN ++Y I +  LC+ E+   A DL   M  +
Sbjct: 407 TVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQ 466

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G   N + F TL+    +K    + IELL+ M      P     S ++D L K
Sbjct: 467 GCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 519



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG +D+A  L   M      PN ++Y  ++ G C A    +AE
Sbjct: 398 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAE 457

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G   + +TFN +++ LCK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 458 DLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD------LISYS 511

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK   A EL   +   G+ PN + Y+    AL  + +++K   +F +++  
Sbjct: 512 TVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDT 571

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +  + V++  ++ S  ++ ET + IE L  M     +P  S  +I++
Sbjct: 572 TIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILI 619



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 6/211 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +++ +C +G VDKA  L   +      P+VV+YN+++ G C A      + L  EM+ 
Sbjct: 196 NLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
                ++VTFN ++  LC+N   +    +L  M + G  PD      I  Y  +IDG+CK
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPD------IRMYATIIDGICK 309

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G LK A E+   +   GL PNVV YN  +  LC+ E+ ++  +L  +M  K    + V 
Sbjct: 310 EGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVT 369

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           F  L+  F +     +VIELL  M     MP
Sbjct: 370 FNILVDFFCQNGLVDRVIELLEQMLVHGCMP 400



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 8/219 (3%)

Query: 12  CKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           CKPNT++Y  ++ GLC  E +VD A++L  QM  +    N +T+N+LI+  C      +A
Sbjct: 433 CKPNTISYTIVLKGLCSAERWVD-AEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQA 491

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  +M+  G   D+++++ ++D L K  K DEA  LL++M+  G+ P      N + Y
Sbjct: 492 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP------NTIIY 545

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +   L + G++    ++  ++    +  + V YN  I +LC   + ++A +    M  
Sbjct: 546 SSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVS 605

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            G  PN   +T L+     +    +  E+L  +  +  +
Sbjct: 606 SGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 644



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  ++  LC  G +  A  +  +M      P    Y+ ++   C       A  +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             ++  RG   DV   N++++ +C    +D+A  LL DL       P   CE ++V+Y  
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDL-------PSFGCEPDVVSYNA 232

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLC   +    +EL + + R    PN+VT+N  I  LC +   ++ H++   M   G
Sbjct: 233 VLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHG 292

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
             P+  ++ T++    ++       E+L  M     K NV+ Y ++L
Sbjct: 293 CTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLL 339



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 19/246 (7%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YN ++ G C+ G ++ A+ L   +    + PN  TY  ++   C      +A  +  EM 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            RG       ++VI++  C+      A R+L DL  +G       C +++     +++ +
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG-------CALDVGNCNLVLNAI 202

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G +  A  L + L   G  P+VV+YN  +  LC  ++     +L  +M      PN 
Sbjct: 203 CDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNI 262

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD-------LLVKNEISLN 250
           V F TL+    R     +V E+L  M +    P   + + I+D       L V +EI LN
Sbjct: 263 VTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEI-LN 321

Query: 251 SIPQFN 256
            +P + 
Sbjct: 322 RMPSYG 327



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 100/234 (42%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P    Y+ I++  C+ G    A  +   +       +V   N +++  C     ++A 
Sbjct: 153 CAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKAL 212

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +L  ++   G + DVV++N ++  LC  ++      L++ M++    P      NIV + 
Sbjct: 213 HLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPP------NIVTFN 266

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G  +   E+   +   G  P++  Y   I  +C +  +  AH++   M   
Sbjct: 267 TLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSY 326

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN V + TL+          +  ELL  M  ++        +I+VD   +N
Sbjct: 327 GLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQN 380


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 126/214 (58%), Gaps = 6/214 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ + YNT+I GLC++G +  A +L  +M ++   P++ TYN +I+G C     ++A +
Sbjct: 467 RPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANH 526

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  + + +G   D+ T+N ++D  C+  K+D A  L++ M   G+ PD      ++ Y  
Sbjct: 527 LIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPD------VITYNT 580

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLCK  K +   E+ +++T  G  PN++TYN  I +LCN +++++A DL  +M+ KG
Sbjct: 581 LLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKG 640

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           + P+ V F TL+  F +  +      L R M+K+
Sbjct: 641 LTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQ 674



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 127/242 (52%), Gaps = 12/242 (4%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M NG  E      PN  TYN+IIDG CK+G V  A  +      +   P+  TY SL++G
Sbjct: 391 MVNGGFE------PNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNG 444

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC   D ++A  +F + + +GL+  ++ +N ++  LC+   +  A +L++ M + G +PD
Sbjct: 445 FCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPD 504

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 I  Y  +I+GLCK+G L +A  L       G +P++ TYN  +   C   ++D 
Sbjct: 505 ------IWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDS 558

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +L   M  +G+ P+ + + TL+    +  ++ +V+E+ ++M ++   P     + I++
Sbjct: 559 AIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIE 618

Query: 241 LL 242
            L
Sbjct: 619 SL 620



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 7/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYNT++DG C++  +D A EL  +M  + + P+V+TYN+L++G C      E  
Sbjct: 536 CIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVM 595

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M ++G   +++T+N I++ LC ++K++EA  LL  M   G+ PD      +V++G
Sbjct: 596 EIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPD------VVSFG 649

Query: 132 CLIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            LI G CK+G L  A  L + + +   +     TYNI I A      M  A  LF +M+ 
Sbjct: 650 TLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKK 709

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            G  P+   +  L+  F +    ++  + L    ++  +P  +    +++ L
Sbjct: 710 NGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCL 761



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 121/245 (49%), Gaps = 6/245 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N V Y T++ G  + G  D+A+ELF +M +  + P+V T+N L+H  C      E+E
Sbjct: 256 CFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESE 315

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +++ RG+  ++ TFN+ +  LCK   +D A RLL  + + G+RPD      +V Y 
Sbjct: 316 RLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPD------VVTYN 369

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLC+  ++  A E    +   G  PN  TYN  I   C    +  A+ +  D   K
Sbjct: 370 TVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFK 429

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+   + +L+  F +  +  + + + +    + + P   + + ++  L +  + L +
Sbjct: 430 GFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPA 489

Query: 252 IPQFN 256
           +   N
Sbjct: 490 LQLMN 494



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 7/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  TYN II+GLCK G +  A  L      +   P++ TYN+L+ G+C     + A 
Sbjct: 501 CKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAI 560

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M  +G+  DV+T+N +++ LCK  K +E   +   M + G  P      NI+ Y 
Sbjct: 561 ELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAP------NIITYN 614

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+ LC   K+  A +L   +   GL P+VV++   I   C    +D A+ LF  ME +
Sbjct: 615 TIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQ 674

Query: 192 -GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             V+     +  ++ +F  +      + L   M K    P      +++D   K
Sbjct: 675 YDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCK 728



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 41/235 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC-----YA-- 64
           C P+  +YN I++ L + G+ ++A +++++MKD+ +  +V TY   I  FC     YA  
Sbjct: 186 CDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAAL 245

Query: 65  ----------------------------NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                                        D + A  LF EM++  L  DV TFN ++  L
Sbjct: 246 RLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHAL 305

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK   + E+ RL D +++ GV P      N+  +   I GLCK G L  A  L   ++R 
Sbjct: 306 CKKGFVLESERLFDKVLKRGVCP------NLFTFNIFIQGLCKEGSLDRAVRLLGCVSRE 359

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
           GL P+VVTYN  I  LC   ++ +A +    M   G  PN   + +++  + +K 
Sbjct: 360 GLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKG 414



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 5/226 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR +     P+ +TYNT+++GLCK    ++  E+F  M ++   PN++TYN++I   C +
Sbjct: 564 NRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNS 623

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              NEA  L  EM  +GL  DVV+F  ++   CK   +D A  L       G+       
Sbjct: 624 KKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFR-----GMEKQYDVS 678

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                Y  +I    +   +K A  L   + + G  P+  TY + I   C    +++ +  
Sbjct: 679 HTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKF 738

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            L+   KG  P+   F  ++     +++  + + ++  M +++++P
Sbjct: 739 LLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVP 784



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 14/219 (6%)

Query: 20  NTIIDGLC--------KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           NT+++G+         ++G + +A + F +M   N +P+V +YN++++        N+A 
Sbjct: 151 NTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAH 210

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +++ M D+ ++SDV T+ + +   C+  +   A RLL  M      P   C  N VAY 
Sbjct: 211 KVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNM------PVLGCFSNAVAYC 264

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ G  + G    AREL   +    L P+V T+N  +HALC    + ++  LF  +  +
Sbjct: 265 TVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKR 324

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           GV PN   F   +    ++    + + LL  + +  + P
Sbjct: 325 GVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRP 363



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 108/266 (40%), Gaps = 40/266 (15%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           T TYN II    ++  +  A  LF +MK    +P+  TY  LI GFC   + N+     +
Sbjct: 681 TATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLL 740

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------CEIN 126
           E +++G    + TF  +++ LC   K+ EA  ++ LM+Q  + PD             I 
Sbjct: 741 ENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDTVNTIFEADKKGHIT 800

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTR-----------------AGLMPNVVTYNITI 169
             AY  L DG+     LK       SL R                     PNVV   +  
Sbjct: 801 YHAYEFLYDGVRDKKILKKKHPNWNSLRREPRSSADVWCFWFVSRMGAFKPNVVKITLKS 860

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            +L     +DK   + + +      P    F  + P+    +   K+I LL +  K+NVM
Sbjct: 861 SSL---STVDKGVQIAICLLPIVQNPEFFFFRDIQPNL--HHLDVKMIMLLHTC-KQNVM 914

Query: 230 PYASILSIIVDLLVKNEISLNSIPQF 255
                    +DL+ K+  SL  + +F
Sbjct: 915 --------CIDLMPKHATSLRLLRRF 932



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TY  +IDG CK G V++  +  L+  ++   P++ T+  +++  C  +   EA 
Sbjct: 712 CDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAV 771

Query: 72  YLFIEMMDRGLQSDVV 87
            +   M+ + +  D V
Sbjct: 772 GIIHLMVQKDIVPDTV 787


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 131/234 (55%), Gaps = 7/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T+TYN +IDGLCK G V+ A+  F +M +    P+V TYN LI GFC A + + A 
Sbjct: 192 CTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAS 251

Query: 72  Y-LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + L  E    G   D+ T+  I+D L KN+K++EA  L++ +   G  P       I  Y
Sbjct: 252 HSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTP------TIATY 305

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L++GLCK+G+L+ A +L + +   G  P+VVTY   I  L  +++  +A+ LF +M +
Sbjct: 306 NALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMAL 365

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +G+A + V +T L+   ++  +  +   + ++M     +P    LS ++D L K
Sbjct: 366 RGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 419



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 129/273 (47%), Gaps = 34/273 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT +T+IDGL K G +  A  +F  M+   + PN V Y++LIHG C A   + A 
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 181

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            +  +M       D +T+NV++D LCK+  ++ A    D M++ G +PD +         
Sbjct: 182 EMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGF 241

Query: 123 ---------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
                                C I+I  Y  ++D L K  K++ A  L + +T  G  P 
Sbjct: 242 CKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPT 301

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           + TYN  ++ LC   ++++A DL   +   G  P+ V +T+L+    ++  + +  +L +
Sbjct: 302 IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFK 361

Query: 222 SMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
            M  R +    ++ ++    L++  +    IPQ
Sbjct: 362 EMALRGL----ALDTVCYTALIRELLQTGKIPQ 390



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYN +++GLCK G +++A +L  ++ D    P+VVTY SLI G        EA 
Sbjct: 17  CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 76

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  RGL  D V +  ++ EL +  K+ +A+ +   M   G  PD      +V   
Sbjct: 77  KLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPD------VVTLS 130

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K G++  A  + +S+   GL PN V Y+  IH LC   +MD A ++   M+  
Sbjct: 131 TMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 190

Query: 192 GVAPNCVIFTTLMPSFIRKN--ETSKVI--ELLRSMDKRNVMPYASILS 236
              P+ + +  L+    +    E ++    E+L +  K +V  Y  ++S
Sbjct: 191 FCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 239



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYN +++GLCK G +++A +L  ++ D    P+VVTY SLI G        EA 
Sbjct: 298 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 357

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  RGL  D V +  ++ EL +  K+ +A+ +   M   G  PD      +V   
Sbjct: 358 KLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPD------VVTLS 411

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K G++  A  + +S+   GL PN V Y+  IH LC   +MD A ++   M+  
Sbjct: 412 TMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 471

Query: 192 GVAPNCVIFTTLMPSFIRKN--ETSKVI--ELLRSMDKRNVMPYASILS 236
              P+ + +  L+    +    E ++    E+L +  K +V  Y  ++S
Sbjct: 472 FCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 520



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TV Y  +I  L + G + +A  ++  M      P+VVT +++I G   A     A  +F
Sbjct: 371 DTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIF 430

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  RGL  + V ++ ++  LCK RKMD A  +L  M +      AFC  + + Y  LI
Sbjct: 431 KSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK------AFCTPDTITYNILI 484

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK G ++ AR     +  AG  P+V TYNI I   C     D A  +F DM     +
Sbjct: 485 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCS 544

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            N V +  L+    ++ + +K     + M +R 
Sbjct: 545 ANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 6/181 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT +T+IDGL K G +  A  +F  M+   + PN V Y++LIHG C A   + A 
Sbjct: 403 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 462

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M       D +T+N+++D LCK+  ++ A    D M++ G +PD +       Y 
Sbjct: 463 EMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVY------TYN 516

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G CK G    A  +   ++ +    NVVTY   I  LC   Q+ KA   F  M+ +
Sbjct: 517 ILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKER 576

Query: 192 G 192
           G
Sbjct: 577 G 577



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 107/214 (50%), Gaps = 6/214 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +++A  L  ++      P + TYN+L++G C      EA  L  +++D G   DVVT+  
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++D L K ++  EA +L   M   G+  D  C      Y  LI  L + GK+  A  + +
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVC------YTALIRELLQTGKIPQASSVYK 115

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
           ++T  G +P+VVT +  I  L    ++  A  +F  ME +G+APN V+++ L+    +  
Sbjct: 116 TMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 175

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +    +E+L  M K    P     ++++D L K+
Sbjct: 176 KMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKS 209



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 77/144 (53%), Gaps = 6/144 (4%)

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           K++EA  L++ +   G  P       I  Y  L++GLCK+G+L+ A +L + +   G  P
Sbjct: 1   KIEEAVALMEKITANGCTP------TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTP 54

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +VVTY   I  L  +++  +A+ LF +M ++G+A + V +T L+   ++  +  +   + 
Sbjct: 55  DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVY 114

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
           ++M     +P    LS ++D L K
Sbjct: 115 KTMTSHGCVPDVVTLSTMIDGLSK 138


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 130/240 (54%), Gaps = 6/240 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R    +C  N  TY  +ID LCK+G   K  ++F +M +  I PNV+ Y+SLI+G C   
Sbjct: 69  RMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVG 128

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA  LF EM+ +G++++V+T+N ++   C+     EATR    M+  G+ PD     
Sbjct: 129 KLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPD----- 183

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V +  LID L K GK++ A ++ + + + G  PN+VTYN  ++ LC   QMD A  LF
Sbjct: 184 -VVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLF 242

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M  +G+  + + + TL+  +    +T + + L R M    + P  +  +I++  L +N
Sbjct: 243 EVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQN 302



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + Y+++I+GLC+ G + +A  LF +M  + I  NV+TYNSLIH  C      EA   
Sbjct: 112 PNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRT 171

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+  G+  DVVTF  ++D L K  K+ EA ++ +LMI+ G  P      NIV Y  L
Sbjct: 172 FSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAP------NIVTYNSL 225

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLC   ++ +A  L + +   G+  +V++YN  I+  C   + ++A  LF  M+ + +
Sbjct: 226 LNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEEL 285

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   +T L+ +  +        EL  +M      P     ++++D L KN
Sbjct: 286 TPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKN 337



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 131/257 (50%), Gaps = 29/257 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN++++GLC    +D A  LF  M +  I  +V++YN+LI+G+C +    EA  L
Sbjct: 217 PNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTL 276

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
           F +M    L   + T+ +++  L +N ++  A  L + M   G  P         D  C+
Sbjct: 277 FRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCK 336

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                +I  Y  LI G+ +  + ++A E+   +   GL+PN+VT
Sbjct: 337 NGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVT 396

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YNI I+ LC + ++ +A  LF+ ME  G   + + F  ++  F+++N+  K +E L+ M 
Sbjct: 397 YNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMR 456

Query: 225 KRNVMPYASILSIIVDL 241
           ++N  P  S+  ++V+L
Sbjct: 457 EKNFSPNDSVTLMLVNL 473



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT +T++ G+C EG V  A ELF +M       +++ Y  LI+          A  
Sbjct: 6   QPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVE 65

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+      +  T+ +++D LCK+    +  ++   MI  G+ P      N++ Y  
Sbjct: 66  LHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICP------NVIVYSS 119

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLC++GKL+ A  L   +   G+  NV+TYN  IHA C      +A   F  M  +G
Sbjct: 120 LINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEG 179

Query: 193 VAPNCVIFTTLMPSFIRK---NETSKVIELL-RSMDKRNVMPYASIL 235
           + P+ V FTTL+    +K    E  K+ EL+ +  +  N++ Y S+L
Sbjct: 180 ILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLL 226



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+ T+ID L K+G V +A ++F  M  +   PN+VTYNSL++G C  +  + A  L
Sbjct: 182 PDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRL 241

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M++RG++ DV+++N +++  C + K +EA  L   M    + P      +I  Y  L
Sbjct: 242 FEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTP------SITTYTIL 295

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  L + G+++ A+EL  ++   G  P++ TY + +  LC +  +++A D+F  ++    
Sbjct: 296 LKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKY 355

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+  I++ L+    +       +E+   +    ++P     +I+++ L K
Sbjct: 356 KPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCK 406



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 6/173 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  ++DGLCK G +++A ++F  +K     P++  Y+ LI G   A     A  +
Sbjct: 322 PSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEI 381

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E+   GL  ++VT+N++++ LCK  K+ EA RL   M + G      CE + +++  +
Sbjct: 382 FDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESG------CEQDEISFNFI 435

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           I G  +  +++ A E  + +      PN     + ++    D Q  +  + FL
Sbjct: 436 IRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQSSELPNNFL 488



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   Y+ +I G+ +    + A E+F ++    + PN+VTYN +I+G C      EAE 
Sbjct: 356 KPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAER 415

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           LF++M + G + D ++FN I+    +  ++ +A   L  M +    P+
Sbjct: 416 LFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPN 463



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 45/162 (27%)

Query: 113 IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV--------- 163
           ++ G +P      N+V    L+ G+C  GK+ +A EL   +TR+G   +++         
Sbjct: 1   MKSGYQP------NLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINAL 54

Query: 164 --------------------------TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
                                     TY + I +LC D    K   +F +M   G+ PN 
Sbjct: 55  RKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNV 114

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
           +++++L+    R  +  + + L   M     K NV+ Y S++
Sbjct: 115 IVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLI 156



 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/101 (19%), Positives = 48/101 (47%)

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           ++G  PN+VT +  +  +C + ++  A +LF  M   G   + +++  L+ +  +  +  
Sbjct: 2   KSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQAR 61

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
           + +EL R M             +++D L K+ +++  +  F
Sbjct: 62  RAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMF 102


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/252 (34%), Positives = 134/252 (53%), Gaps = 11/252 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+   YN++I G CKEG ++KA +L+ +M    INPN+V YN+LI+ + Y   GN
Sbjct: 656 GVV--PDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGN 713

Query: 69  --EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA  LF EM+ +G+  D   + +++D   K   +++A  L     Q  V        +
Sbjct: 714 LTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-------S 766

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           + A+  LID  CK GK+  AREL   +    L PN+VTY I I A    E M++A  LFL
Sbjct: 767 LSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFL 826

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           DME + + PN + +T+L+ S+ +     K+I L + M+ R +   A    ++     K  
Sbjct: 827 DMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEG 886

Query: 247 ISLNSIPQFNRQ 258
            SL ++   N+ 
Sbjct: 887 KSLEALKLLNKS 898



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  TYN  I GLC+ G VD+A E+   M ++ + P+  TY  L+ GFC      EA+
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M   GL  +  T+  ++D   K   ++EA R+ D MI  G++      +N+V Y 
Sbjct: 332 LIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLK------LNVVTYN 385

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+ K G++  A  L   +  AG+ P+  TYN+ I        M KA +L  +M+ +
Sbjct: 386 AMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKAR 445

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + P+   ++ L+      ++  K  E+L  M +  V P
Sbjct: 446 KLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKP 484



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T TYN +IDG  K   + KA EL  +MK   + P+  TY+ LI G C+++D  +A  
Sbjct: 413 EPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANE 472

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G++ +V  +  ++    +  + + A  LL +MI  GV PD FC      Y C
Sbjct: 473 VLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFC------YNC 526

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+  K++ A+ L   +   G+ PN  TY   I+      ++  A   F DM   G
Sbjct: 527 LIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSG 586

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + PN VI+T L+        T + +   + M ++ ++P     S I+  L KN
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKN 639



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 7/229 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I   CK G V K K +  +M+ E   PN+ TYN+ I G C     +EA  +
Sbjct: 240 PDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-CKPNLFTYNAFIGGLCQTGAVDEALEV 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              MM++GL  D  T+ +++D  CK ++  EA  + + M   G+ P+ F       Y  L
Sbjct: 299 KKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRF------TYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K G ++ A  +   +   GL  NVVTYN  I  +    +M KA  LF +M + G+
Sbjct: 353 IDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGI 412

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            P+   +  L+  +++ ++ +K  ELL  M  R + P     S+++  L
Sbjct: 413 EPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGL 461



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 8/228 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY   I+   K G +  A+  F  M    I PN V Y  LI G C   +  EA  
Sbjct: 553 KPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALS 612

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F  M+++GL  D+  ++ I+  L KN K  EA  +    ++ GV PD F       Y  
Sbjct: 613 TFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFL------YNS 666

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI--HALCNDEQMDKAHDLFLDMEV 190
           LI G CK G ++ A +L   +   G+ PN+V YN  I  +  C    + +A  LF +M  
Sbjct: 667 LISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMIS 726

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           KG++P+  I+  L+    ++    K + L     +++V   ++  S+I
Sbjct: 727 KGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLI 774



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   Y T+I    +E   + A EL   M    + P++  YN LI G C A    EA+ 
Sbjct: 483 KPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKM 542

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L ++M ++G++ +  T+   ++   K+ ++  A R    M+  G+ P      N V Y  
Sbjct: 543 LLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVP------NNVIYTI 596

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C +G    A    + +   GL+P++  Y+  IH+L  + +  +A  +FL     G
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V P+  ++ +L+  F ++ +  K  +L   M    + P
Sbjct: 657 VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINP 694



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            +N++ID  CK G V +A+ELF  M D+ + PN+VTY  LI  +  A    EAE LF++M
Sbjct: 769 AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDM 828

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             R +  + +T+  ++    +     +   L   M   G+  DA      +AYG +    
Sbjct: 829 ETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDA------IAYGVMASAY 882

Query: 138 CKIGK-LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           CK GK L+  + L++SL     + + V ++  I  LC ++Q+    +L  +M  + ++ +
Sbjct: 883 CKEGKSLEALKLLNKSLVEGIKLEDDV-FDALIFHLCKEKQISTVLELLSEMGKEELSLS 941

Query: 197 CVIFTTLMPSFIR---KNETSKVIELLRSM 223
                TL+  F +   ++E SKV+ +++ +
Sbjct: 942 SKTCNTLLLGFYKSGNEDEASKVLGVMQRL 971



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 10/190 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY- 72
           PN VTY  +ID   K   +++A++LFL M+  NI PN +TY SL+    Y   GN  +  
Sbjct: 800 PNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLL--LSYNQIGNRFKMI 857

Query: 73  -LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M  RG+  D + + V+    CK  K  EA +LL+  +  G++      +    + 
Sbjct: 858 SLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIK------LEDDVFD 911

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LCK  ++    EL   + +  L  +  T N  +         D+A  +   M+  
Sbjct: 912 ALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRL 971

Query: 192 GVAPNCVIFT 201
           G  P  +  T
Sbjct: 972 GWVPTSLSLT 981


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 133/234 (56%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN++I+GLC  G V++A  L  QM +  + PN++T+N+L++GFC      +A  
Sbjct: 268 KPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGE 327

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M  +G+  +V T+N+++D  CK+  M++A  L  +M+  GV PD      +  Y C
Sbjct: 328 LFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPD------VSTYNC 381

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+ G L+ AR L   +    L  +++TYNI I +LCN  +M KA  L  +M  KG
Sbjct: 382 LIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKG 441

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + P+ + + T++  + ++      + L   M+K   +   +  ++++    K +
Sbjct: 442 LKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKD 495



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 6/197 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +ID  CK+  ++ A  L+  M  + + P+V TYN LI G C   D   A  L
Sbjct: 339 PNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNL 398

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  + L++D++T+N+++D LC   +M +A RLLD M + G++P          Y  +
Sbjct: 399 VSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQL------TYNTM 452

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L+ A  L   + + G + NV TYN+ I   C  ++++ A+ L  +M  KG+
Sbjct: 453 IDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGL 512

Query: 194 APNCVIFTTLMPSFIRK 210
            PN + +  +    + K
Sbjct: 513 IPNRMTYEIVTEEMMEK 529



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 122/234 (52%), Gaps = 3/234 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  + N ++ GL K G +   + ++ +M    I P ++++N +I+G C     N+A  
Sbjct: 125 KLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGD 184

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M  RG+ ++V+T+N ++D  CK  K+ +  +   ++ +  +R D  C  N V +  
Sbjct: 185 IIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKE--MRADGICP-NEVTFNI 241

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK   +  A ++   + R G+ PNVVTYN  I+ LCN+ ++++A  L   M    
Sbjct: 242 LIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSC 301

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + PN +    L+  F +     +  EL   M K+ + P  +  +I++D   K+E
Sbjct: 302 LKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDE 355



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 65/108 (60%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + +TYN +ID LC +G + KA  L  +M  + + P+ +TYN++I G+C   +   A  
Sbjct: 408 KADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALN 467

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           L  +M   G  ++V T+NV++   CK  K+++A  LL+ M++ G+ P+
Sbjct: 468 LRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPN 515



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 52/84 (61%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYNT+IDG CKEG +  A  L  QM+      NV TYN LI GFC  +   +A  
Sbjct: 443 KPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANG 502

Query: 73  LFIEMMDRGLQSDVVTFNVIMDEL 96
           L  EM+++GL  + +T+ ++ +E+
Sbjct: 503 LLNEMLEKGLIPNRMTYEIVTEEM 526


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 135/229 (58%), Gaps = 17/229 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V Y+ IIDGL K+G    A+ LF++M+D+ I P++VTY+ +I+GFC +   +EA+ 
Sbjct: 149 KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQR 208

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+ R +  DVVTF+ +++ L K   ++ A  LL  MI  GV P      N+V    
Sbjct: 209 LLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCP------NVVTCNT 262

Query: 133 LIDGLCKIGKLKNARELSQSLTRA-----------GLMPNVVTYNITIHALCNDEQMDKA 181
           L+DGLC  GKLK+A E+ +++ ++           G+ P+V TYNI I  L N+ +  +A
Sbjct: 263 LLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEA 322

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +L+ +M  +G+ P+ V +++++    +++   +  ++  SM  ++  P
Sbjct: 323 EELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 371



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 7/219 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F  +CKPN VT+ T+++GLC+EG V +A  L  +M ++ + PN +TY +++ G C   D 
Sbjct: 73  FHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132

Query: 68  NEAEYLFIEMMD-RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             A  L  +M +   ++ DVV ++ I+D L K+ +  +A  L   M   G+ PD      
Sbjct: 133 VSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPD------ 186

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           IV Y C+I+G C  GK   A+ L Q +    + P+VVT++  I+AL  +  ++ A DL  
Sbjct: 187 IVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQ 246

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           +M   GV PN V   TL+       +    +E+ ++M K
Sbjct: 247 EMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 11/230 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VT+NT++ GLC E  V +A +LF QM      PNVVT+ +L++G C      EA  L
Sbjct: 48  PTLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVAL 103

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGC 132
              M++ GLQ + +T+  I+D +CK      A  LL  M +   ++PD      +V Y  
Sbjct: 104 LDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPD------VVIYSA 157

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGL K G+  +A+ L   +   G+ P++VTY+  I+  C+  +  +A  L  +M V+ 
Sbjct: 158 IIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK 217

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           ++P+ V F+ L+ + +++ + +   +LL+ M    V P     + ++D L
Sbjct: 218 ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGL 267



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 136/252 (53%), Gaps = 13/252 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M+N N + G+    +  ++N +I   C    +  A   F ++     +P +VT+N+L+HG
Sbjct: 1   MSN-NIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHG 59

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C  +  +EA  LF +M     + +VVTF  +M+ LC+  ++ EA  LLD M++ G++P 
Sbjct: 60  LCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQP- 114

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMD 179
                N + YG ++DG+CK+G   +A  L + +   + + P+VV Y+  I  L  D +  
Sbjct: 115 -----NQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHT 169

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            A +LF++M+ KG+ P+ V ++ ++  F    + S+   LL+ M  R + P     S ++
Sbjct: 170 DAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLI 229

Query: 240 DLLVKNEISLNS 251
           + LVK E  LNS
Sbjct: 230 NALVK-EGDLNS 240



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 18/224 (8%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIH 59
           VC PN VT NT++DGLC  G +  A E+F  M+              + P+V TYN LI 
Sbjct: 253 VC-PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILIS 311

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G        EAE L+ EM  RG+  D VT++ +++ LCK  ++DEAT++ D M      P
Sbjct: 312 GLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 371

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                 NIV +  LI G CK G + +  EL   + R G++ N +TY   I        ++
Sbjct: 372 ------NIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNIN 425

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            + D+F +M   GV P+ +    ++     K E  K + +L  +
Sbjct: 426 GSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEEL 469



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 18/247 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ VT++ +I+ L KEG ++ A++L  +M    + PNVVT N+L+ G C +    +A  
Sbjct: 219 SPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALE 278

Query: 73  LFI----EMMD-------RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           +F      MMD        G++ DV T+N+++  L    K  EA  L + M   G+ PD 
Sbjct: 279 MFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 338

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                 V Y  +I+GLCK  +L  A ++  S+      PN+VT+N  I   C    +D  
Sbjct: 339 ------VTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG 392

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVD 240
            +LF +M  +G+  N + + TL+  F +    +  +++ + M    V P   +I +++  
Sbjct: 393 LELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTG 452

Query: 241 LLVKNEI 247
           L  K E+
Sbjct: 453 LWSKEEL 459



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 95/179 (53%), Gaps = 6/179 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +I GL  EG   +A+EL+ +M    I P+ VTY+S+I+G C  +  +EA  
Sbjct: 300 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQ 359

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +    ++VTFN ++   CK   +D+   L   M + G+  +A      + Y  
Sbjct: 360 MFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANA------ITYIT 413

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           LI G  K+G +  + ++ Q +  +G+ P+ +T    +  L + E++ KA  +  ++++ 
Sbjct: 414 LIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEELQMS 472


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 135/229 (58%), Gaps = 17/229 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V Y+ IIDGL K+G    A+ LF++M+D+ I P++VTY+ +I+GFC +   +EA+ 
Sbjct: 149 KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQR 208

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+ R +  DVVTF+ +++ L K   ++ A  LL  MI  GV P      N+V    
Sbjct: 209 LLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCP------NVVTCNT 262

Query: 133 LIDGLCKIGKLKNARELSQSLTRA-----------GLMPNVVTYNITIHALCNDEQMDKA 181
           L+DGLC  GKLK+A E+ +++ ++           G+ P+V TYNI I  L N+ +  +A
Sbjct: 263 LLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEA 322

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +L+ +M  +G+ P+ V +++++    +++   +  ++  SM  ++  P
Sbjct: 323 EELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 371



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 7/219 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F  +CKPN VT+ T+++GLC+EG V +A  L  +M ++ + PN +TY +++ G C   D 
Sbjct: 73  FHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132

Query: 68  NEAEYLFIEMMD-RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             A  L  +M +   ++ DVV ++ I+D L K+ +  +A  L   M   G+ PD      
Sbjct: 133 VSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPD------ 186

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           IV Y C+I+G C  GK   A+ L Q +    + P+VVT++  I+AL  +  ++ A DL  
Sbjct: 187 IVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQ 246

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           +M   GV PN V   TL+       +    +E+ ++M K
Sbjct: 247 EMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 11/230 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VT+NT++ GLC E  V +A +LF QM      PNVVT+ +L++G C      EA  L
Sbjct: 48  PTLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVAL 103

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGC 132
              M++ GLQ + +T+  I+D +CK      A  LL  M +   ++PD      +V Y  
Sbjct: 104 LDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPD------VVIYSA 157

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGL K G+  +A+ L   +   G+ P++VTY+  I+  C+  +  +A  L  +M V+ 
Sbjct: 158 IIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK 217

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           ++P+ V F+ L+ + +++ + +   +LL+ M    V P     + ++D L
Sbjct: 218 ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGL 267



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 136/252 (53%), Gaps = 13/252 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M+N N + G+    +  ++N +I   C    +  A   F ++     +P +VT+N+L+HG
Sbjct: 1   MSN-NIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHG 59

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C  +  +EA  LF +M     + +VVTF  +M+ LC+  ++ EA  LLD M++ G++P 
Sbjct: 60  LCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQP- 114

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMD 179
                N + YG ++DG+CK+G   +A  L + +   + + P+VV Y+  I  L  D +  
Sbjct: 115 -----NQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHT 169

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            A +LF++M+ KG+ P+ V ++ ++  F    + S+   LL+ M  R + P     S ++
Sbjct: 170 DAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLI 229

Query: 240 DLLVKNEISLNS 251
           + LVK E  LNS
Sbjct: 230 NALVK-EGDLNS 240



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 110/224 (49%), Gaps = 18/224 (8%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIH 59
           VC PN VT NT++DGLC  G +  A E+F  M+              + P+V TYN LI 
Sbjct: 253 VC-PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILIS 311

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G        EAE L+ EM  RG+  D VT++ +++ LCK  ++DEAT++ D M      P
Sbjct: 312 GLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 371

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                 NIV +  LI G CK G + +  EL   + R G++ N +TY   I        ++
Sbjct: 372 ------NIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNIN 425

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            + D+F +M   GV P+ +    ++     K E  + + +L  +
Sbjct: 426 GSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEEL 469



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 18/247 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ VT++ +I+ L KEG ++ A++L  +M    + PNVVT N+L+ G C +    +A  
Sbjct: 219 SPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALE 278

Query: 73  LFI----EMMD-------RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           +F      MMD        G++ DV T+N+++  L    K  EA  L + M   G+ PD 
Sbjct: 279 MFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 338

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                 V Y  +I+GLCK  +L  A ++  S+      PN+VT+N  I   C    +D  
Sbjct: 339 ------VTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG 392

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVD 240
            +LF +M  +G+  N + + TL+  F +    +  +++ + M    V P   +I +++  
Sbjct: 393 LELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTG 452

Query: 241 LLVKNEI 247
           L  K E+
Sbjct: 453 LWSKEEL 459



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 95/179 (53%), Gaps = 6/179 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +I GL  EG   +A+EL+ +M    I P+ VTY+S+I+G C  +  +EA  
Sbjct: 300 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQ 359

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +    ++VTFN ++   CK   +D+   L   M + G+  +A      + Y  
Sbjct: 360 MFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANA------ITYIT 413

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           LI G  K+G +  + ++ Q +  +G+ P+ +T    +  L + E++ +A  +  ++++ 
Sbjct: 414 LIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEELQMS 472


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 130/231 (56%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+I G CK   V+   ELF +M    +  + VTY +LI G  +  D + A+
Sbjct: 358 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 417

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  D++T+++++D LC N K+++A  + D M +  ++ D      I  Y 
Sbjct: 418 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------IYIYT 471

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+ +  +L  SL+  G+ PNVVTYN  I  LC+   + +A+ L   M+  
Sbjct: 472 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 531

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  + +   EL+R M     +  AS + ++ ++L
Sbjct: 532 GPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 582



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V +NTIID LCK   VD A  LF +M+ + I PNVVTY+SLI   C     ++A  
Sbjct: 219 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 278

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+++ +  ++VTFN ++D   K  K  EA +L D MI+  + PD F       Y  
Sbjct: 279 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIF------TYNS 332

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G C   +L  A+++ + +      P+VVTYN  I   C  ++++   +LF +M  +G
Sbjct: 333 LVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG 392

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +TTL+       +     ++ + M    V P     SI++D L  N
Sbjct: 393 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 445



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 114/216 (52%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY+++I  LC  G    A +L   M ++ INPN+VT+N+LI  F       EAE 
Sbjct: 254 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 313

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ +M+ R +  D+ T+N +++  C + ++D+A ++ + M+     PD      +V Y  
Sbjct: 314 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD------VVTYNT 367

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  ++++  EL + ++  GL+ + VTY   I  L +D   D A  +F  M   G
Sbjct: 368 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 427

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           V P+ + ++ L+       +  K +E+   M K  +
Sbjct: 428 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 463



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TYN +I+  C+   +  A  L  +M      P++VT +SL++G+C+    ++A  L  +M
Sbjct: 84  TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 143

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++ G + D +TF  ++  L  + K  EA  L+D M+Q G +P      N+V YG +++GL
Sbjct: 144 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP------NLVTYGVVVNGL 197

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G    A  L   +  A +  +VV +N  I +LC    +D A +LF +ME KG+ PN 
Sbjct: 198 CKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 257

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V +++L+         S   +LL  M ++ + P     + ++D  VK
Sbjct: 258 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 304



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    +  A  L  QM +    P+ +T+ +LIHG    N  +EA  
Sbjct: 114 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 173

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ RG Q ++VT+ V+++ LCK    D A  LL+ M    +  D      +V +  
Sbjct: 174 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD------VVIFNT 227

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK   + +A  L + +   G+ PNVVTY+  I  LC+  +   A  L  DM  K 
Sbjct: 228 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 287

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V F  L+ +F+++ +  +  +L   M KR++ P
Sbjct: 288 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP 325



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+T+ T+I GL       +A  L  +M      PN+VTY  +++G C   D + A  
Sbjct: 149 RPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALN 208

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M    +++DVV FN I+D LCK R +D+A  L   M   G+RP      N+V Y  
Sbjct: 209 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP------NVVTYSS 262

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC  G+  +A +L   +    + PN+VT+N  I A   + +  +A  L+ DM  + 
Sbjct: 263 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 322

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + +L+  F   +   K  ++   M  ++  P
Sbjct: 323 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFP 360



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYNT+I GLC +  + +A  L  +MK++   PN  TYN+LI       D   +  
Sbjct: 499 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAE 558

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM       D  T  ++ + L   R
Sbjct: 559 LIREMRSCRFVGDASTIGLVANMLHDGR 586



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 88/197 (44%), Gaps = 13/197 (6%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI-- 125
           ++A  LF  M+       +V FN ++  + K +K D    L + M +         EI  
Sbjct: 29  DDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQR--------LEIVH 80

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +  Y  LI+  C+  ++  A  L   + + G  P++VT +  ++  C+ +++  A  L 
Sbjct: 81  GLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 140

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK- 244
             M   G  P+ + FTTL+      N+ S+ + L+  M +R   P      ++V+ L K 
Sbjct: 141 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 200

Query: 245 --NEISLNSIPQFNRQK 259
              +++LN + +    K
Sbjct: 201 GDTDLALNLLNKMEAAK 217


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 6/247 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC+P  VTYNT++ GL K G V  A  L   M +  ++P+V+T+NS++ G C      +A
Sbjct: 468 VCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDA 527

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F   ++RG + +VVT++ ++D L K  KMDEA +LL  M++ G      C  N V Y
Sbjct: 528 HNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG------CRANTVTY 581

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++DGL K+G++++A  + + +  AG +P+ VTYN  I      +++ +A  L  +M  
Sbjct: 582 STVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLE 641

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            G  P+ V +TTL     R     + +E+L  M  R   P A   S IVD L K      
Sbjct: 642 AGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTE 701

Query: 251 SIPQFNR 257
           ++  F +
Sbjct: 702 ALGYFEK 708



 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 133/275 (48%), Gaps = 30/275 (10%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ NTVTY+T++DGL K G ++ A  +  QM+D    P+ VTYN+LI GF       EA 
Sbjct: 574 CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAV 633

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAF 122
            L  EM++ G    VVT+  +   LC++ + DEA  +LD M   G  P         D  
Sbjct: 634 GLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGL 693

Query: 123 CEI---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           C+                      +++AY  LIDGLCK G++  A E  + + RAG +P+
Sbjct: 694 CKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPD 753

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVT++I I+ LC+  ++D   +LF  M  +G   +   +  ++ ++  K E S    LL 
Sbjct: 754 VVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLE 813

Query: 222 SMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
            M    +        I++  L  N+    ++  F+
Sbjct: 814 EMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFH 848



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 28/257 (10%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C PN VT++T+I GLC  G V++A E++ +M   E I+PN  TY  L+ G C A D    
Sbjct: 377 CSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRL 436

Query: 71  EYLFIEMMDRGLQSD---------------------VVTFNVIMDELCKNRKMDEATRLL 109
           E  F +M++R  +S                      +VT+N ++  L K+  + +A  LL
Sbjct: 437 EQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLL 496

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           + MI+ G+ PD      ++ +  ++DGLCK  ++ +A  + +     G  PNVVTY+  I
Sbjct: 497 EFMIESGLSPD------VITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLI 550

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             L    +MD+A  L   M   G   N V ++T++   ++       + +LR M     +
Sbjct: 551 DGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCL 610

Query: 230 PYASILSIIVDLLVKNE 246
           P A   + ++D   K +
Sbjct: 611 PDAVTYNTLIDGFFKRQ 627



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 32/259 (12%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG   +P  VTY+T+IDGLC++  VDK  +L  +M      PN VTYN+L++       
Sbjct: 29  QFGF--RPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGR 86

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------ 120
             EA  L   M   G   +++TF +I+  LCK  +++ A R++D M+  G  PD      
Sbjct: 87  AKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTV 146

Query: 121 ---AFCEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
              A CE+                    + V Y  ++DGL K G+L+ A  + Q L  + 
Sbjct: 147 LLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESF 206

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
             P V T+ I +  L     +  A++ F  M   GV+PN V +  L+    +  +    +
Sbjct: 207 SSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIAL 266

Query: 218 ELLRSMDKRNVM-PYASIL 235
            LLR  + +  M  ++S+L
Sbjct: 267 GLLRDKNSQAGMFAFSSLL 285



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTYN +I+GLCK G V  A   F +       P VVTY+++I G C  N+ ++   L  E
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M  RG   + VT+N +++ L    +  EA  LL+ M   G  P+      ++ +G +I G
Sbjct: 62  MAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPE------LITFGLIIKG 115

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK G+++ A  +   +   G +P+V  + + +HALC   ++D+A   F  + + G  P+
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPD 175

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V + T++    +         +L+ + +    P     +I VD L K
Sbjct: 176 AVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSK 223



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 54/286 (18%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V +N++++GLC+   VD+A ELF  MK+   + +V+TYN L+ G C      EA 
Sbjct: 306 CVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEA- 364

Query: 72  YLFIEMMDR--GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAF------ 122
           Y  +E+M R  G   +VVTF+ ++  LC   ++++A  + + M+   G+ P+ F      
Sbjct: 365 YRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLL 424

Query: 123 --------------------------------------------CEINIVAYGCLIDGLC 138
                                                       C   +V Y  L+ GL 
Sbjct: 425 EGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLS 484

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G +++A  L + +  +GL P+V+T+N  +  LC ++++  AH++F     +G  PN V
Sbjct: 485 KSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVV 544

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++TL+    +  +  + ++LL  M +          S +VD L+K
Sbjct: 545 TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLK 590



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 9/212 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  +T+  II GLCKEG ++ A  +  +M D    P+V  +  L+H  C     +EA 
Sbjct: 102 CPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAW 161

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           + F +++  G   D VT+N ++D L K  +++ A  +L L+ +    P  F       + 
Sbjct: 162 FFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVF------TFT 215

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             +DGL K G L  A E   S+ + G+ PN VTY+  I  LC   ++D A  L  D   K
Sbjct: 216 IAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRD---K 272

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
                   F++L+    + +   + I+LL++M
Sbjct: 273 NSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAM 304



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 133/299 (44%), Gaps = 62/299 (20%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN------------------------ 48
            PNTVTY+ +IDGLCK G +D A  L   ++D+N                          
Sbjct: 243 SPNTVTYDALIDGLCKAGKLDIALGL---LRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQ 299

Query: 49  --------PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
                   PNVV +NSL++G C A   +EA  LF  M + G  +DV+T+N+++  LCK R
Sbjct: 300 LLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLR 359

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-GLM 159
           ++ EA R ++LM     R    C  N+V +  LI GLC  G++  A E+ + +    G+ 
Sbjct: 360 RIPEAYRHVELM-----RRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGIS 414

Query: 160 PNVVTYNITIHALC---NDEQMDKAHDLFLDMEVKGVA------------------PNCV 198
           PN  TY   +  LC   +  ++++  +  L+ E +  +                  P  V
Sbjct: 415 PNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLV 474

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            + TL+    +       + LL  M +  + P     + ++D L K +  L++   F R
Sbjct: 475 TYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKR 533



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 130/303 (42%), Gaps = 77/303 (25%)

Query: 11   VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            V  P+ + Y+ +IDGLCK G +D+A E   +M      P+VVT++ LI+G C A   +  
Sbjct: 714  VVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTG 773

Query: 71   EYLFIEMMDRGLQSDV-----------------------------------VTFNVIMDE 95
              LF  M +RG ++D+                                   VT  +++  
Sbjct: 774  LELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKA 833

Query: 96   LCKNRKMDEAT---------------------------------RLLDLMIQGGVRPDAF 122
            LC N ++DEA                                   LL  M+  G  PDA 
Sbjct: 834  LCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDA- 892

Query: 123  CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
            C      Y  ++DGL K G  + A +L Q +   G  P++ TY I I  L   +Q+  A 
Sbjct: 893  CN-----YMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLAC 947

Query: 183  DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            D F +M  K + P+ +++++L+ +F + ++     +LLRS     + P  ++ S +VD L
Sbjct: 948  DYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRS---SGIEPTITMYSTMVDSL 1004

Query: 243  VKN 245
             KN
Sbjct: 1005 CKN 1007



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 15   NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            + ++YNT+I  L      ++A EL   M  +  +P+   Y +++ G   A     A  L 
Sbjct: 856  DEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLL 915

Query: 75   IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             EM  RG   D+ T+ +++  L K +++  A    + M++  ++PDA      + Y  LI
Sbjct: 916  QEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDA------IVYSSLI 969

Query: 135  DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            D  CK  K+ +A +L +S   +G+ P +  Y+  + +LC +   DKA ++  +M+ K   
Sbjct: 970  DAFCKADKVDDAWKLLRS---SGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCE 1026

Query: 195  PNCVIFTTLMPSFIRKNETSKVIELL 220
            P   I+T+L  +++ +    + ++L+
Sbjct: 1027 PGIHIWTSLATAYVAEGRVDEAVKLV 1052



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
             P+   Y T++DGL K G  + A +L  +M+    +P++ TY  +I G   A     A  
Sbjct: 889  SPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACD 948

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             F EM+ + L+ D + ++ ++D  CK  K+D+A +LL      G+ P       I  Y  
Sbjct: 949  YFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR---SSGIEP------TITMYST 999

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            ++D LCK      A E+ + +      P +  +     A   + ++D+A  L  D++
Sbjct: 1000 MVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 58/118 (49%)

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  LI+GLCK G++ +A    +   + G  P VVTY+  I  LC D ++DK   L  
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +M  +G APN V + TL+ + + +    +   LL  M      P      +I+  L K
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCK 118


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 29/266 (10%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G +C+P+ V YNTIIDGLCK+  V  A +L+ +M ++ + PNVVTY SLI+GFC     +
Sbjct: 182 GEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLD 241

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE---- 124
           +A  L  EM+ + +  +V TFN ++D LCK  KM EA  L+ +M++ GV PD F      
Sbjct: 242 KAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALM 301

Query: 125 ---------------INIVA----------YGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
                           NI+A          Y  +I GL K+  L  A +L + +    ++
Sbjct: 302 DGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVI 361

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+VV Y+  I  LC   +++ A     +M  +G  PN + +T+L+ +  + ++  K I L
Sbjct: 362 PDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIAL 421

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKN 245
           L+ +  + +       +I+VD L K+
Sbjct: 422 LKKIKDQGIQANMYTYNILVDGLCKD 447



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 126/217 (58%), Gaps = 8/217 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           + GV C  +  +Y+ +I GL K   +D+A +LF  M++EN+ P+VV Y+SLI G C +  
Sbjct: 322 QMGVTC--DVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGR 379

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            N A     EM DRG   +V+T+  ++D LCK+ ++D+A  LL  +   G++       N
Sbjct: 380 INSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQA------N 433

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  L+DGLCK G+L +A+++ Q L   G   +VVTY+I I+ LC +   D+A  L  
Sbjct: 434 MYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLS 493

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            ME KG  P+ + + T++ +F  K+   K  +LLR M
Sbjct: 494 KMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 130/269 (48%), Gaps = 41/269 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+NT++DGLCKEG + +AK L   M  E + P+V TYN+L+ G+    +  +A+ +
Sbjct: 257 PNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNV 316

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G+  DV +++V++  L K + +DEA  L + M    V PD      +VAY  L
Sbjct: 317 FNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPD------VVAYSSL 370

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTY---------------------------- 165
           IDGLCK G++ +A +    +   G  PNV+TY                            
Sbjct: 371 IDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGI 430

Query: 166 -------NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
                  NI +  LC D ++  A  +F D+ +KG   + V ++ ++    +++   + + 
Sbjct: 431 QANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALT 490

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           LL  M+ +  +P A     I++   + ++
Sbjct: 491 LLSKMEDKGCVPDAIAYETIINAFFEKDM 519



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 118/240 (49%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   +   P  + +  I+  L K         LF +M+   I  N +T N LI+ +C+ 
Sbjct: 38  NRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHL 97

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              N A  +F +++  G Q D++T+  ++  LC N ++ E+    D ++  G++ D    
Sbjct: 98  RQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDH--- 154

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
              V+YG LI+GLCKIG+   A  L + +      P+VV YN  I  LC D+ +  A DL
Sbjct: 155 ---VSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDL 211

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + +M  K V PN V +T+L+  F    +  K   LL  M  +NV P     + +VD L K
Sbjct: 212 YCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCK 271



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 59/101 (58%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + N  TYN ++DGLCK+G +  A+++F  +  +  N +VVTY+ +I+G C  +  +EA  
Sbjct: 431 QANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALT 490

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           L  +M D+G   D + +  I++   +    D+A +LL  MI
Sbjct: 491 LLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMI 531



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 7/210 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           + L+ +  +I PN     S  H F    + N+A   F  M+       ++ F  I+  L 
Sbjct: 2   VILRFRFHSIIPNSTLLLSHTH-FHSLPNLNDAIDSFNRMLRMRPPPPIIKFGKILGSLV 60

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K +       L   M   G++       N +    LI+  C + ++ +A  +   + + G
Sbjct: 61  KTKHYPIVIHLFQRMELHGIQS------NYITLNILINSYCHLRQINSAFSVFAKILKLG 114

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
             P+++TY   I  LC + Q+ ++ +    +  +G+  + V + TL+    +  +T   +
Sbjct: 115 YQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPAL 174

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            LLR ++     P   + + I+D L K+++
Sbjct: 175 RLLRKIEGEICRPDVVMYNTIIDGLCKDKL 204



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY+ +I+GLCKE   D+A  L  +M+D+   P+ + Y ++I+ F   +  ++AE L 
Sbjct: 468 DVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLL 527

Query: 75  IEMMD 79
            EM+D
Sbjct: 528 REMID 532


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 127/229 (55%), Gaps = 6/229 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y T+IDG CK G    A +LF +M+   I P+ + +++LI G   +    EA+ L
Sbjct: 213 PDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKL 272

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G + D VT+  ++D  CK  +M +A  L + M+Q G+ P      N+V Y  L
Sbjct: 273 FNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTP------NVVTYTAL 326

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            DGLCK G+L  A EL   + R GL  N+ TYN  ++ LC    + +A  L  +M+  G+
Sbjct: 327 ADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGL 386

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            P+ + +TTLM ++ +  E  K  ELLR M  R + P     +++++ L
Sbjct: 387 HPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGL 435



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY  +IDG CK G + KA  L  QM    + PNVVTY +L  G C + + + A  
Sbjct: 282 EPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANE 341

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  +GLQ ++ T+N I++ LCK   + +A +L++ M + G+ PD       + Y  
Sbjct: 342 LLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDT------ITYTT 395

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D   K G++  AREL + +   GL P VVT+N+ ++ LC   +++    L   M  KG
Sbjct: 396 LMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKG 455

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + PN   + ++M  +  +N      E+ R M  + V+P ++  +I++
Sbjct: 456 IMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILI 502



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYNTI++GLCK G + +A +L  +MK+  ++P+ +TY +L+  +    +  +A  L 
Sbjct: 354 NISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELL 413

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+DRGLQ  VVTFNV+M+ LC + K+++  RLL  M++ G+ P+A        Y  ++
Sbjct: 414 REMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNA------ATYNSIM 467

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    ++ + E+ + +   G++P+  TYNI I   C    M +A  L  +M  K   
Sbjct: 468 KQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFN 527

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
                +  L+  F ++ +  +  +L   M +  ++  A I ++ VD+
Sbjct: 528 LTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDM 574



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 121/246 (49%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  + DGLCK G +D A EL  +M  + +  N+ TYN++++G C A +  +A  L
Sbjct: 318 PNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKL 377

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + GL  D +T+  +MD   K  +M +A  LL  M+  G++P       +V +  L
Sbjct: 378 MEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQP------TVVTFNVL 431

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLC  GKL++   L + +   G+MPN  TYN  +   C    M  + +++  M  +GV
Sbjct: 432 MNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGV 491

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+   +  L+    +     +   L + M ++     AS  + ++    K +  L +  
Sbjct: 492 VPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQ 551

Query: 254 QFNRQK 259
            F   +
Sbjct: 552 LFEEMR 557



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NT +YN +++ L + G + +A  L ++M+ +   P+VV+Y ++I G+C+  +  +   L 
Sbjct: 109 NTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLV 168

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  +GL+ ++ T++ I+  LCK+ K+ E  ++L  M++ GV PD       V Y  LI
Sbjct: 169 KEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDH------VIYTTLI 222

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK+G  + A +L   +    ++P+ + ++  I  L    ++ +A  LF +M  KG  
Sbjct: 223 DGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFE 282

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+ V +T L+  + +  E  K   L   M +  + P     + + D L K+
Sbjct: 283 PDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKS 333



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F E    G+  +  ++N++M+ L +  K+ EA  LL  M   G  PD      +V+Y  
Sbjct: 97  VFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPD------VVSYTT 150

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG C +G+L+   +L + +   GL PN+ TY+  I  LC   ++ +   +  +M  +G
Sbjct: 151 IIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRG 210

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           V P+ VI+TTL+  F +   T    +L   M+ R ++P +   S ++
Sbjct: 211 VFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALI 257



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 6/157 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+N +++GLC  G ++  + L   M ++ I PN  TYNS++  +C  N+   +  
Sbjct: 422 QPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTE 481

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M  +G+  D  T+N+++   CK R M EA  L   M++      A       +Y  
Sbjct: 482 IYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTA------SSYNA 535

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           LI G  K  KL  AR+L + + R GL+ +   YN+ +
Sbjct: 536 LIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFV 572



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 6/204 (2%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           ++F +     +  N  +YN L++         EA +L + M  +G   DVV++  I+D  
Sbjct: 96  KVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGY 155

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C   ++ +  +L+  M   G++P      N+  Y  +I  LCK GK+    ++ + + + 
Sbjct: 156 CHVGELQKVVQLVKEMQLKGLKP------NLYTYSSIILLLCKSGKVVEGEKVLREMMKR 209

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G+ P+ V Y   I   C       A+ LF +ME + + P+ + F+ L+       +  + 
Sbjct: 210 GVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEA 269

Query: 217 IELLRSMDKRNVMPYASILSIIVD 240
            +L   M K+   P     + ++D
Sbjct: 270 DKLFNEMIKKGFEPDEVTYTALID 293



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 18/198 (9%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           PN+   NS  H           E L     D G  SD   F+V    L +   ++EA + 
Sbjct: 13  PNLDISNSFTHF---------VERLIYTYKDWG--SDPHVFDVFFQVLVEAGLLNEARKF 61

Query: 109 LDLMIQGGVRPDA-FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
            D ++  GV   A  C + +       D L  +  LK   E  Q     G+  N  +YNI
Sbjct: 62  FDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMV--LKVFSEFPQ----LGVCWNTESYNI 115

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            +++L    ++ +AH L + ME KG  P+ V +TT++  +    E  KV++L++ M  + 
Sbjct: 116 LMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKG 175

Query: 228 VMPYASILSIIVDLLVKN 245
           + P     S I+ LL K+
Sbjct: 176 LKPNLYTYSSIILLLCKS 193



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P++ TYN +I G CK   + +A  L  +M ++  N    +YN+LI GF       
Sbjct: 490 GVV--PDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLL 547

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           EA  LF EM   GL +    +N+ +D   +   M+    L D  I+
Sbjct: 548 EARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIE 593


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V+Y+T+I+G   EG VDK   LFL+M D  I P+VVTY ++I G C A   + AE
Sbjct: 199 CPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAE 258

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+D G++ ++ T+N ++       K  E  R+L+ M  GG +P      N   YG
Sbjct: 259 AVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKP------NCCTYG 312

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++ LCK G+ + AR    S+   G+ P+V TY I +H       + + HDL   M   
Sbjct: 313 SLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVAN 372

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G++PN  IF     ++ +     K +++   M ++ + P A     ++D L K
Sbjct: 373 GISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCK 425



 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ V+Y  +ID LCK G VD A+  F QM +E + P++V ++SL++G C  +   + E 
Sbjct: 410 SPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEE 469

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM++ G+  ++V FN I+  LCK  ++ E  RL+D +   GVRPD      +++Y  
Sbjct: 470 LFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPD------VISYNT 523

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C  G +  A +L + +   GL P+  +YN  +H  C   ++D A+  F  M   G
Sbjct: 524 LIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNG 583

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIEL----LRSMDKRNVMPYASIL 235
           + P  V + T++    +    S+  EL    + S  K ++  Y  IL
Sbjct: 584 ITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIIL 630



 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 129/251 (51%), Gaps = 9/251 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGN 68
           C P+TV+YN ++ GLC E   ++A EL   M D+ +    PNVV+Y+++I+GF      +
Sbjct: 161 CMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVD 220

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +   LF+EMMDRG+  DVVT+  ++D LCK +  D A  +   MI  GV+P      NI 
Sbjct: 221 KPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP------NID 274

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y CLI G   IGK K    + + ++  G  PN  TY   ++ LC + +  +A   F  M
Sbjct: 275 TYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSM 334

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             KG+ P+   +  ++  +  K   S++ +LL  M    + P   I +I      K  I 
Sbjct: 335 IGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGII 394

Query: 249 LNSIPQFNRQK 259
             ++  FN+ +
Sbjct: 395 DKAMDIFNKMR 405



 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 137/247 (55%), Gaps = 8/247 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP++ +YNT++ G CK G +D A   F +M    I P VVTYN+++HG       +EA+ 
Sbjct: 550 KPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKE 609

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M++ G + D+ T+N+I++ LCK+  +DEA ++   +   G+      ++NI+ +  
Sbjct: 610 LYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGL------QLNIITFNI 663

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K G+ ++A +L  ++   GL+ NVVTY + +  L  +  +++   LF  ME  G
Sbjct: 664 MIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNG 723

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN-- 250
            APN  +   L+   + + + S+    L  +D+RN    AS  S+++ +   +E   +  
Sbjct: 724 TAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAK 783

Query: 251 SIPQFNR 257
           S+P+  R
Sbjct: 784 SLPKKYR 790



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ ++YNT+IDG C  G +D+A +L   M    + P+  +YN+L+HG+C A   + A  
Sbjct: 515 RPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYS 574

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M+  G+   VVT+N I+  L + ++  EA  L   MI  G + D      I  Y  
Sbjct: 575 HFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWD------IYTYNI 628

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK   +  A ++ Q+L   GL  N++T+NI I AL    + + A DLF  +   G
Sbjct: 629 ILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 688

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
           +  N V +  ++ + I +    +   L  +M+K    P + +L+ +V  LL + +IS
Sbjct: 689 LVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDIS 745



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 29/246 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY T+IDGLCK    D+A+ +F QM D  + PN+ TYN LIHG+       E   +
Sbjct: 236 PDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRM 295

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------- 120
             EM   G + +  T+  +++ LCKN +  EA    D MI  G++P              
Sbjct: 296 LEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYAT 355

Query: 121 --AFCEIN-----IVAYGC---------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
             A  E++     +VA G                K G +  A ++   + + GL P+ V+
Sbjct: 356 KGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVS 415

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   I ALC   ++D A   F  M  +GV P+ V+F++L+      ++  KV EL   M 
Sbjct: 416 YGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEML 475

Query: 225 KRNVMP 230
              + P
Sbjct: 476 NVGIHP 481



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 32   VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
            +D A  LF +M  + + P+VVTYN+++HG       +EA+ L++ M++   Q ++ T+N+
Sbjct: 807  IDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNI 866

Query: 92   IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
            I++ LCK+  +DEA ++   +   G+      ++NI+ +  +I  L K G+ ++A +L  
Sbjct: 867  ILNGLCKSNCVDEAFKMFQSLCSKGL------QLNIITFNIMIGALLKGGRKEDAMDLFA 920

Query: 152  SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            ++   GL+P+VVTY +    L  +  +++   LFL ME  G   +  +   L+   +++ 
Sbjct: 921  AIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRG 980

Query: 212  ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN--SIPQFNR 257
            + S+    L  +D++N    AS  S ++ L  + E   +  S+P+  R
Sbjct: 981  DISRAGAYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSLPEKYR 1028



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 41/253 (16%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---------- 62
           KPN  TY ++++ LCK G   +A+  F  M  + I P+V TY  ++HG+           
Sbjct: 305 KPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHD 364

Query: 63  -----------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                  YA  G  ++A  +F +M  +GL  D V++  ++D LC
Sbjct: 365 LLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALC 424

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  ++D+A    + MI  GV PD      IV +  L+ GLC + K +   EL   +   G
Sbjct: 425 KLGRVDDAEVKFNQMINEGVTPD------IVVFSSLVYGLCTVDKWEKVEELFFEMLNVG 478

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PN+V +N  +  LC + ++ +   L   +E  GV P+ + + TL+          +  
Sbjct: 479 IHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEAS 538

Query: 218 ELLRSMDKRNVMP 230
           +LL  M    + P
Sbjct: 539 KLLEGMVSVGLKP 551



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 4/241 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+  +   PN  TY+ +I   C+ G ++     F  +       + +  N L++G C   
Sbjct: 84  RDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGK 143

Query: 66  DGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              EA + L   M + G   D V++N+++  LC  ++ +EA  LL +M    V     C 
Sbjct: 144 RVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWS---CP 200

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V+Y  +I+G    G++     L   +   G+ P+VVTY   I  LC  +  D+A  +
Sbjct: 201 PNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAV 260

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M   GV PN   +  L+  ++   +  +V+ +L  M      P       +++ L K
Sbjct: 261 FQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCK 320

Query: 245 N 245
           N
Sbjct: 321 N 321



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 10/164 (6%)

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           T+++++   C+   ++       L+++ G R D       +    L++GLC   ++  A 
Sbjct: 96  TYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDH------IVINQLLNGLCDGKRVGEAM 149

Query: 148 E-LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF---LDMEVKGVAPNCVIFTTL 203
           + L Q +   G MP+ V+YNI +  LCN+++ ++A +L     D +V    PN V ++T+
Sbjct: 150 DVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTV 209

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +  F  + +  K   L   M  R + P     + ++D L K ++
Sbjct: 210 INGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQL 253



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 96/230 (41%), Gaps = 13/230 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTY  +++ L +EG +++   LF  M+     PN    N+L+    +  D + A    
Sbjct: 692 NVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYL 751

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            ++ +R    +  T ++++     +     A  L          P  +  +N      LI
Sbjct: 752 SKLDERNFSVEASTTSMLISIFSSDEYQHHAKSL----------PKKYRILNEANSSALI 801

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
               K  ++ +A  L + +   GL P+VVTYN  +H L    +  +A +L+L M      
Sbjct: 802 K---KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQ 858

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            N   +  ++    + N   +  ++ +S+  + +       +I++  L+K
Sbjct: 859 MNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLK 908


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 130/231 (56%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+I G CK   V+   ELF +M    +  + VTY +LI G  +  D + A+
Sbjct: 396 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 455

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  D++T+++++D LC N K+++A  + D M +  ++ D      I  Y 
Sbjct: 456 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------IYIYT 509

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+ +  +L  SL+  G+ PNVVTYN  I  LC+   + +A+ L   M+  
Sbjct: 510 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 569

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  + +   EL+R M     +  AS + ++ ++L
Sbjct: 570 GPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 620



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V +NTIID LCK   VD A  LF +M+ + I PNVVTY+SLI   C     ++A  
Sbjct: 257 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 316

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+++ +  ++VTFN ++D   K  K  EA +L D MI+  + PD F       Y  
Sbjct: 317 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIF------TYNS 370

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G C   +L  A+++ + +      P+VVTYN  I   C  ++++   +LF +M  +G
Sbjct: 371 LVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG 430

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +TTL+       +     ++ + M    V P     SI++D L  N
Sbjct: 431 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 483



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 114/216 (52%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY+++I  LC  G    A +L   M ++ INPN+VT+N+LI  F       EAE 
Sbjct: 292 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 351

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ +M+ R +  D+ T+N +++  C + ++D+A ++ + M+     PD      +V Y  
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD------VVTYNT 405

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  ++++  EL + ++  GL+ + VTY   I  L +D   D A  +F  M   G
Sbjct: 406 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           V P+ + ++ L+       +  K +E+   M K  +
Sbjct: 466 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TYN +I+  C+   +  A  L  +M      P++VT +SL++G+C+    ++A  L  +M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++ G + D +TF  ++  L  + K  EA  L+D M+Q G +P      N+V YG +++GL
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP------NLVTYGVVVNGL 235

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G    A  L   +  A +  +VV +N  I +LC    +D A +LF +ME KG+ PN 
Sbjct: 236 CKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 295

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V +++L+         S   +LL  M ++ + P     + ++D  VK
Sbjct: 296 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    +  A  L  QM +    P+ +T+ +LIHG    N  +EA  
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ RG Q ++VT+ V+++ LCK    D A  LL+ M    +      E ++V +  
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKI------EADVVIFNT 265

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK   + +A  L + +   G+ PNVVTY+  I  LC+  +   A  L  DM  K 
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V F  L+ +F+++ +  +  +L   M KR++ P
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP 363



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+T+ T+I GL       +A  L  +M      PN+VTY  +++G C   D + A  
Sbjct: 187 RPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALN 246

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M    +++DVV FN I+D LCK R +D+A  L   M   G+RP      N+V Y  
Sbjct: 247 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP------NVVTYSS 300

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC  G+  +A +L   +    + PN+VT+N  I A   + +  +A  L+ DM  + 
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + +L+  F   +   K  ++   M  ++  P
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFP 398



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYNT+I GLC +  + +A  L  +MK++   PN  TYN+LI       D   +  
Sbjct: 537 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAE 596

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM       D  T  ++ + L   R
Sbjct: 597 LIREMRSCRFVGDASTIGLVANMLHDGR 624



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 88/197 (44%), Gaps = 13/197 (6%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI-- 125
           ++A  LF  M+       +V FN ++  + K +K D    L + M +         EI  
Sbjct: 67  DDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQR--------LEIVH 118

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +  Y  LI+  C+  ++  A  L   + + G  P++VT +  ++  C+ +++  A  L 
Sbjct: 119 GLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 178

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK- 244
             M   G  P+ + FTTL+      N+ S+ + L+  M +R   P      ++V+ L K 
Sbjct: 179 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238

Query: 245 --NEISLNSIPQFNRQK 259
              +++LN + +    K
Sbjct: 239 GDTDLALNLLNKMEAAK 255


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 135/238 (56%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + + N V YNT+I G+CK+  V+ A +L+ +M  + I+PNVVTY++LI GF       
Sbjct: 70  GKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLK 129

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +++   ++ D  TFN+++D  CK+RKM E   +  +M++ G+ PD      +V
Sbjct: 130 DAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPD------VV 183

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG   + ++  A+ +  ++ + G+ P++ +YNI I+  C  +++DKA +LF +M
Sbjct: 184 TYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEM 243

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             K + PN V + +L+    +    S  ++L+  M  R V P     + I+D L K  
Sbjct: 244 HCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTH 301



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 14/194 (7%)

Query: 1   MANGNREFGVVCK----PNTVTYNTIIDG--LCKEGFVDKAKELFLQMKDENINPNVVTY 54
           M  G   F ++ K    P+ VTYN+++DG  L KE  V+ AK +F  M    +NP++ +Y
Sbjct: 163 MKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKE--VNTAKSIFNTMAQGGVNPDIRSY 220

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           N LI+GFC     ++A  LF EM  + +  +VVT+N ++D L K+ ++  A +L+D M  
Sbjct: 221 NILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHD 280

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            GV P      NI+ Y  +ID L K  ++  A  L       G+ P++ TY I I  LC 
Sbjct: 281 RGVPP------NILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCK 334

Query: 175 DEQMDKAHDLFLDM 188
             ++  A ++F D+
Sbjct: 335 GGRLKDARNIFEDL 348



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G   + +T N ++  LC   ++ +A    D ++  G   D       V+YG LI GLCK+
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQ------VSYGTLIHGLCKV 55

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G+ + A +L Q +    +  N V YN  I+ +C D+ ++ A DL+ +M  KG++PN V +
Sbjct: 56  GETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTY 115

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + L+  F    +    I+L   +   N+ P     +I+VD   K+ 
Sbjct: 116 SALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDR 161



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 41/218 (18%)

Query: 48  NPNVVT-----------------------------------YNSLIHGFCYANDGNEAEY 72
           +PN +T                                   Y +LIHG C   +   A  
Sbjct: 4   HPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALD 63

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   +  + +Q + V +N ++  +CK++ +++A  L   M+  G+ P      N+V Y  
Sbjct: 64  LLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISP------NVVTYSA 117

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G   +GKLK+A +L   +    + P+  T+NI +   C D +M +   +F  M  +G
Sbjct: 118 LISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQG 177

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+ V + +L+  +    E +    +  +M +  V P
Sbjct: 178 IIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNP 215


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 1   MANGNREFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS 56
           +A   R F V+ +    PN VTY  +I+G    G  +    LF +M+ + + PN+ TYN 
Sbjct: 54  VAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNC 113

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           LI  +C   +   A  LF EM  +G+  +VV++N+++  LC++ K+ +A +L + M + G
Sbjct: 114 LIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREG 173

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +RP      +IV +  LIDG  K GK+ NA      +  AGL P+VVTYN  I   C   
Sbjct: 174 IRP------SIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVR 227

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            + +A   FLDM+ +G+AP  V +T L+ +F ++NE  +   +L  M+K
Sbjct: 228 DIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEK 276



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+N +IDG  K G +  A   F QMK   + P+VVTYN LI GFC   D   A  
Sbjct: 175 RPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVR 234

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F++M +RGL    VT+ +++    K  +MD A  +L  M + G+      E+++ +YG 
Sbjct: 235 AFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGL------EVDVQSYGV 288

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  LC  GK+ +AR+L QS+   G+ PN V Y++ I+    +    KA  L ++M   G
Sbjct: 289 LLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNG 348

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + PN   +   +     + +  +   L+  M+   +    +I  I++D
Sbjct: 349 LIPNVASYCLTIRLLCNEGKCQEAEALIDDMEHAGLQTSETICRILLD 396



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V+YN +I GLC+   +  A +LF  M+ E I P++VT+N LI G+  A     A + F
Sbjct: 142 NVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFF 201

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   GL   VVT+N ++   C+ R +  A R    M + G+ P        V Y  LI
Sbjct: 202 NQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTK------VTYTILI 255

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
               K  ++  A  +   + +AGL  +V +Y + +HALC + +M  A  LF  M++KGV 
Sbjct: 256 AAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVK 315

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           PN V++  ++  + R+  + K + L+  M K  ++P  +   + + LL
Sbjct: 316 PNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLL 363



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 27  CKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV 86
           C+ G V +A+ +F  M    + PN VTY +LI+G+           LF EM   G++ ++
Sbjct: 49  CQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNL 108

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
            T+N ++ E C+  +   A  L D M   GV        N+V+Y  LI GLC+  KLK+A
Sbjct: 109 YTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVH------NVVSYNILIAGLCRHSKLKDA 162

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
            +L +++ R G+ P++VT+N+ I       +M  A   F  M+  G+ P+ V +  L+  
Sbjct: 163 VQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICG 222

Query: 207 FIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F R  + ++ +     M +R + P     +I++    K
Sbjct: 223 FCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAK 260



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 15/209 (7%)

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDRGLQS-----DVVTFNVIMDELCKNRKMDEATRLLD 110
           +++   C A +   A    + ++ RG +S     DV     ++   C++  + EA R+ D
Sbjct: 7   AVVRRLCVAAEVRSA----LAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEARRVFD 62

Query: 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170
           +M + GV P      N V Y  LI+G    G  +    L   + R G+ PN+ TYN  I 
Sbjct: 63  VMPRLGVAP------NEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIG 116

Query: 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             C   +   A  LF +M VKGV  N V +  L+    R ++    ++L  +M +  + P
Sbjct: 117 EWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRP 176

Query: 231 YASILSIIVDLLVKNEISLNSIPQFNRQK 259
                ++++D   K     N++  FN+ K
Sbjct: 177 SIVTFNLLIDGYGKAGKMANALHFFNQMK 205


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 6/242 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N   G    P+  TYN +ID LCKEG ++ ++ LF+QM++  ++P+VVTYNSLI G+   
Sbjct: 219 NDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKV 278

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               E   LF EM D G   D++T+N +++  CK  KM  A      M   G++P     
Sbjct: 279 GSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKP----- 333

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V Y  LID  CK G ++ A +L   + R GL+PN  TY   I A C    + +A  L
Sbjct: 334 -NVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKL 392

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             DM   GV  N V +T L+    +     +  E+ RSM K  + P   + + +V   +K
Sbjct: 393 LNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIK 452

Query: 245 NE 246
            E
Sbjct: 453 AE 454



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 10/252 (3%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P+ +TYN +I+  CK   + +A E F +MK+  + PNVVTY++LI  FC       
Sbjct: 294 VGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQG 353

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  +M   GL  +  T+  ++D  CK   + EA +LL+ M+Q GV+      +NIV 
Sbjct: 354 AIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVK------LNIVT 407

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+DGLCK G++  A E+ +S+ + G+ PN   Y   +H     E+M+ A  +   M 
Sbjct: 408 YTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMT 467

Query: 190 VKGVAPNCVIFTTLMPSFI--RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              + P+ +++ +++      RK E +K+I  L  M  R +     I + I+D   K   
Sbjct: 468 ECNIKPDLILYGSIIWGHCSQRKLEETKLI--LEEMKSRGISANPVISTTIIDAYFKAGK 525

Query: 248 SLNSIPQFNRQK 259
           S +++  F   +
Sbjct: 526 SSDALNFFQEMQ 537



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 128/245 (52%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY+T+ID  CKEG +  A +L   M+   + PN  TY SLI   C A +  EA  
Sbjct: 332 KPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWK 391

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+  G++ ++VT+  ++D LCK  +M EA  +   M++ G+ P      N   Y  
Sbjct: 392 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP------NQQVYTA 445

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G  K  ++++A ++ + +T   + P+++ Y   I   C+  ++++   +  +M+ +G
Sbjct: 446 LVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 505

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           ++ N VI TT++ ++ +  ++S  +   + M    V        +++D L +  I   ++
Sbjct: 506 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAV 565

Query: 253 PQFNR 257
             F R
Sbjct: 566 DYFCR 570



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C   +  ++ +     + G +++A E F +M++    P   + N L+H    + +G   
Sbjct: 155 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLV 214

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              F +M+  G+   V T+NV++D LCK   ++ + RL   M + G+ PD      +V Y
Sbjct: 215 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPD------VVTY 268

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDG  K+G L+    L   +   G +P+++TYN  I+  C  E+M +A + F +M+ 
Sbjct: 269 NSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKN 328

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ PN V ++TL+ +F ++      I+LL  M +  ++P     + ++D
Sbjct: 329 NGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLID 378



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 29/240 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N VTY  ++DGLCK G + +A+E+F  M  + I+PN   Y +L+HG+  A    +A  
Sbjct: 402 KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 461

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE-------------------ATRLLDLMI 113
           +  +M +  ++ D++ +  I+   C  RK++E                   +T ++D   
Sbjct: 462 ILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYF 521

Query: 114 QGGVRPDAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           + G   DA            E  IV Y  LIDGLC+ G ++ A +    +   GL PNV 
Sbjct: 522 KAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVA 581

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            Y   I  LC +  ++ A  LF +M+ +G+ P+   FT L+   ++     + + L+  M
Sbjct: 582 VYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRM 641



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 107/226 (47%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   + N ++  L K G     ++ F  M    I P+V TYN +I   C   D   +  L
Sbjct: 193 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 252

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F++M + GL  DVVT+N ++D   K   ++E   L + M   G  PD      I+ Y  L
Sbjct: 253 FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPD------IITYNGL 306

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CK  K+  A E    +   GL PNVVTY+  I A C +  M  A  L  DM   G+
Sbjct: 307 INCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGL 366

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM----DKRNVMPYASIL 235
            PN   +T+L+ +  +    ++  +LL  M     K N++ Y ++L
Sbjct: 367 LPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALL 412



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 109/256 (42%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY ++ID  CK G + +A +L   M    +  N+VTY +L+ G C A    EAE +
Sbjct: 368 PNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEV 427

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
           F  M+  G+  +   +  ++    K  +M++A ++L  M +  ++PD     +I+   C 
Sbjct: 428 FRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCS 487

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       +ID   K GK  +A    Q +   G+   +VT
Sbjct: 488 QRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVT 547

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y + I  LC    ++ A D F  M   G+ PN  ++T+L+      N      +L   M 
Sbjct: 548 YCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQ 607

Query: 225 KRNVMPYASILSIIVD 240
            R + P  +  + ++D
Sbjct: 608 CRGMTPDITAFTALID 623



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 6/212 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            N V   TIID   K G    A   F +M+D  +   +VTY  LI G C A     A   
Sbjct: 508 ANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDY 567

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+  GLQ +V  +  ++D LC N  ++ A +L D M   G+ PD      I A+  L
Sbjct: 568 FCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPD------ITAFTAL 621

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K G L+ A  L   +T   +  ++  Y   +       ++ +A   F +M  KG+
Sbjct: 622 IDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGI 681

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            P  V+   L+  + ++ +  + IEL   M++
Sbjct: 682 LPEEVLCICLLREYYKRGQLDEAIELKNEMER 713



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +   VTY  +IDGLC+ G V+ A + F +M    + PNV  Y SLI G C  N    A+ 
Sbjct: 542 EATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKK 601

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  RG+  D+  F  ++D   K+  + EA  L+  M +  +      E ++  Y  
Sbjct: 602 LFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAI------EFDLHVYTS 655

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           L+ G  + G+L  AR+    +   G++P  V     +       Q+D+A +L  +ME
Sbjct: 656 LVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEME 712



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ + Y +II G C +  +++ K +  +MK   I+ N V   ++I  +  A   ++A  
Sbjct: 472 KPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALN 531

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM D G+++ +VT+ V++D LC+   ++ A      M+  G++P      N+  Y  
Sbjct: 532 FFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQP------NVAVYTS 585

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLC    +++A++L   +   G+ P++  +   I        + +A  L   M    
Sbjct: 586 LIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELA 645

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +  +  ++T+L+  F +  E  +  +    M ++ ++P
Sbjct: 646 IEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILP 683



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 14/167 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y ++IDGLC    ++ AK+LF +M+   + P++  + +LI G     +  EA  
Sbjct: 577 QPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALV 636

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M +  ++ D+  +  ++    +  ++ +A +  + MI+ G+ P+    I      C
Sbjct: 637 LISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI------C 690

Query: 133 LIDGLCKIGKLKNARELSQSLTR--------AGLMPNVVTYNITIHA 171
           L+    K G+L  A EL   + R        A L  N    N+T+HA
Sbjct: 691 LLREYYKRGQLDEAIELKNEMERMAYSFEFDAQLAYNEQGVNLTLHA 737


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 129/231 (55%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+I+G CK   V    ELF  M    +  N VTY +LIHGF  A+D + A+
Sbjct: 376 CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQ 435

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  +++T+N ++D LCKN K+++A  + + + +  + PD      I  Y 
Sbjct: 436 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD------IYTYN 489

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            + +G+CK GK+++  +L  SL+  G+ P+V+ YN  I   C     ++A+ LF+ M+  
Sbjct: 490 IMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED 549

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  P+   + TL+ + +R  + +   EL++ M        AS   ++ D+L
Sbjct: 550 GPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML 600



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 129/252 (51%), Gaps = 41/252 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+N++ID   KEG + +A++LF +M   +I+PN+VTYNSLI+GFC  +  +EA+ +
Sbjct: 308 PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 367

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKM------------------------------- 102
           F  M+ +    DVVT+N +++  CK +K+                               
Sbjct: 368 FTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQ 427

Query: 103 ----DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
               D A  +   M+  GV P      NI+ Y  L+DGLCK GKL+ A  + + L ++ +
Sbjct: 428 ASDCDNAQMVFKQMVSDGVHP------NIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM 481

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P++ TYNI    +C   +++   DLF  + +KGV P+ + + T++  F +K    +   
Sbjct: 482 EPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYT 541

Query: 219 LLRSMDKRNVMP 230
           L   M +   +P
Sbjct: 542 LFIKMKEDGPLP 553



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V Y+T+ID LCK   VD A  LF +M ++ I P+V TY+SLI   C     ++A  
Sbjct: 237 EADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 296

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  +VVTFN ++D   K  K+ EA +L D MIQ  + P      NIV Y  
Sbjct: 297 LLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP------NIVTYNS 350

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+++   +     +P+VVTYN  I+  C  +++    +LF DM  +G
Sbjct: 351 LINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRG 410

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V +TTL+  F + ++      + + M    V P     + ++D L KN
Sbjct: 411 LVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+++I  LC  G    A  L   M +  INPNVVT+NSLI  F       EAE 
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ R +  ++VT+N +++  C + ++DEA ++  LM+     PD      +V Y  
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD------VVTYNT 385

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK  K+ +  EL + ++R GL+ N VTY   IH        D A  +F  M   G
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG 445

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V PN + + TL+    +  +  K + +   + K  + P
Sbjct: 446 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEP 483



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN +I+ LC+   +  A  +  +M      P++VT NSL++GFC+ N  +EA  L 
Sbjct: 99  NLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 158

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M++ G Q D VTF  ++  L ++ K  EA  L++ M+  G +PD      +V YG +I
Sbjct: 159 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD------LVTYGAVI 212

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G+   A  L   + +  +  +VV Y+  I +LC    +D A +LF +M+ KG+ 
Sbjct: 213 NGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIR 272

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+   +++L+         S    LL  M +R + P     + ++D   K
Sbjct: 273 PDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAK 322



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 33/256 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TVT+ T++ GL +     +A  L  +M  +   P++VTY ++I+G C   + + A  
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 226

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------C 123
           L  +M    +++DVV ++ ++D LCK R +D+A  L   M   G+RPD F         C
Sbjct: 227 LLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLC 286

Query: 124 EI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                 N+V +  LID   K GKL  A +L   + +  + PN+V
Sbjct: 287 NYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIV 346

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  I+  C  +++D+A  +F  M  K   P+ V + TL+  F +  +    +EL R M
Sbjct: 347 TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDM 406

Query: 224 DKR----NVMPYASIL 235
            +R    N + Y +++
Sbjct: 407 SRRGLVGNTVTYTTLI 422



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT N++++G C    + +A  L  QM +    P+ VT+ +L+HG    N  +EA  L
Sbjct: 133 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 192

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ +G Q D+VT+  +++ LCK  + D A  LL+ M +G +  D      +V Y  +
Sbjct: 193 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEAD------VVIYSTV 246

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK   + +A  L   +   G+ P+V TY+  I  LCN  +   A  L  DM  + +
Sbjct: 247 IDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI 306

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V F +L+ +F ++ +  +  +L   M +R++ P
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 9/195 (4%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +EA  LF EM+       +V F+ ++  + K +K D      + M   GV        N+
Sbjct: 47  DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSH------NL 100

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  +I+ LC+  +L  A  +   + + G  P++VT N  ++  C+  ++ +A  L   
Sbjct: 101 YTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 160

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN-- 245
           M   G  P+ V FTTL+    + N+ S+ + L+  M  +   P       +++ L K   
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220

Query: 246 -EISLNSIPQFNRQK 259
            +++LN + +  + K
Sbjct: 221 PDLALNLLNKMEKGK 235



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ + YNT+I G CK+G  ++A  LF++MK++   P+  TYN+LI       D   +  
Sbjct: 517 KPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 576

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM       D  T+ ++ D L   R
Sbjct: 577 LIKEMRSCRFAGDASTYGLVTDMLHDGR 604



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 10/182 (5%)

Query: 80  RGLQSDVVTFNVIMDELCKNR----KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           RG+    ++++   ++L +N     K+DEA  L   M++    P      +IV +  L+ 
Sbjct: 20  RGIYFSGLSYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFP------SIVEFSKLLS 73

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
            + K+ K        + +   G+  N+ TYNI I+ LC   Q+  A  +   M   G  P
Sbjct: 74  AIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGP 133

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
           + V   +L+  F   N  S+ + L+  M +    P     + +V  L ++  +  ++   
Sbjct: 134 SIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALV 193

Query: 256 NR 257
            R
Sbjct: 194 ER 195


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTY++I+DGLC  G VD A EL  ++K     P+ + Y +++ G C       AE
Sbjct: 422 CVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAE 481

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      D VTFN ++  LC+   +D A R+++ M + G  PD      IV Y 
Sbjct: 482 ELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPD------IVTYN 535

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           C+IDGLC    + +A EL   L   G  P++VT+N  +  LC  ++ + A  L  +M   
Sbjct: 536 CIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRS 595

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              P+ + F T++ S  +K   ++ IE L+ M +   +P +S  SI+VD L+K
Sbjct: 596 NCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK 648



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN +I+ +C EG VD+A  +   +      P+ VTY  ++   C +    E E
Sbjct: 317 CEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVE 376

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM       D VTFN I+  LC+   +D A  ++D M + G      C  +IV Y 
Sbjct: 377 ELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHG------CVADIVTYS 430

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DGLC +G++ +A EL   L   G  P+ + Y   +  LC+ EQ ++A +L  +M   
Sbjct: 431 SILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCS 490

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              P+ V F T++ S  +K    + I ++  M +    P     + I+D L
Sbjct: 491 DCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGL 541



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 8/219 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN IIDGLC E  +D A EL   ++     P++VT+N+L+ G C  +   +AE
Sbjct: 527 CSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAE 586

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM      D +TFN ++  LC+   + +A   L +M + G  P      N   Y 
Sbjct: 587 QLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVP------NSSTYS 640

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++D L K GK + A EL   +T     P+++TYN  I  L    +M++A DL   M   
Sbjct: 641 IVVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAGKMEEALDLLRVMVSN 698

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P+   + +L     R++ T + + +LR +    + P
Sbjct: 699 GLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSP 737



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 16/245 (6%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           MA+G    G  C P  V  N +I  LC +G V  A+ +F  +     +  VVTYN++++G
Sbjct: 176 MASGG---GRNCPP-VVPCNILIKRLCSDGRVSDAERVFAAL---GPSATVVTYNTMVNG 228

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +C A    +A  L   M       D  TFN ++  LC   ++ +A  + D M+  G  P 
Sbjct: 229 YCRAGRIEDARRLINGM---PFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSP- 284

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                ++V Y  L+D  CK    + A  L   +   G  P++VTYN+ I+A+CN+  +D+
Sbjct: 285 -----SVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDE 339

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A ++  ++   G  P+ V +T ++ S        +V ELL  M   N  P     + IV 
Sbjct: 340 ALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVT 399

Query: 241 LLVKN 245
            L + 
Sbjct: 400 SLCQQ 404



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 8/212 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +T+NT+I  LC++G + +A E    M +    PN  TY+ ++     A     A 
Sbjct: 597 CPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAAL 656

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M +     D++T+N ++  L K  KM+EA  LL +M+  G+ PD         Y 
Sbjct: 657 ELLSGMTNG--TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDT------TTYR 708

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L  G+C+      A  + + +   GL P+   YN  +   C D + D A D F  M   
Sbjct: 709 SLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSS 768

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G  P+   +  L+ +        +   LL S+
Sbjct: 769 GCMPDESTYVILLEALAYGGLLDEAKRLLASL 800



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 14/223 (6%)

Query: 26  LCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ 83
           L + G +D+A  LF  M        P VV  N LI   C     ++AE +F  +   G  
Sbjct: 160 LVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAAL---GPS 216

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
           + VVT+N +++  C+  ++++A RL++ M      PD F       +  LI  LC  G++
Sbjct: 217 ATVVTYNTMVNGYCRAGRIEDARRLINGM---PFPPDTF------TFNPLIRALCVRGRI 267

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
            +A  +   +   G  P+VVTY+I + A C +    +A  L  +M  KG  P+ V +  L
Sbjct: 268 PDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVL 327

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + +   + +  + + +L ++      P A   + ++  L  +E
Sbjct: 328 INAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSE 370



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNT+I  L K G +++A +L   M    + P+  TY SL +G C  +  + A  +
Sbjct: 667 PDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRM 726

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              + D GL  D   +N ++   C++R+ D A      M+  G  PD         Y  L
Sbjct: 727 LRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDE------STYVIL 780

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLM 159
           ++ L   G L  A+ L  SL   G++
Sbjct: 781 LEALAYGGLLDEAKRLLASLCSLGVL 806


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T++D LC+ G VD A   F ++  E + PN V + +LIHG C  +  ++AE L
Sbjct: 379 PNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEEL 438

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+ RG+  + + FN +++ LCK   +  A  + DLM    VR D  C+  ++ Y  L
Sbjct: 439 AVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLM----VRVDVQCD--VITYTTL 492

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L + +   G+ PN VTYN  I+  C + +++ A  LF  M  KGV
Sbjct: 493 IDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGV 552

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P  VI++T++    +    +   EL   M K  +       +II+  L +N  + +++ 
Sbjct: 553 NPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALR 612

Query: 254 QFN 256
            F+
Sbjct: 613 MFH 615



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y T+I+GL +EG +DKA  LF +M D+ ++PN +TYN L+HG+C +    EA 
Sbjct: 202 CPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAI 261

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M   G++ DVVT+N +M  LCKN +  EA ++ D M++ G +PD+        YG
Sbjct: 262 GIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDS------SIYG 315

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G    G L    +L   + R G  P+   +NI I A      +D+A   F  M  +
Sbjct: 316 TLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQ 375

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G+ PN V + T+M +  R  +    +     +    + P   +   ++  L
Sbjct: 376 GLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGL 426



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 20/253 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYNTII+G CK G ++ A  LF QM  + +NP +V Y++++HG         A+ 
Sbjct: 518 KPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKE 577

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR------LLDLMIQGGVRPDAFCEIN 126
           L++ M+  G++  + T+N+I+  LC+N   D+A R      L+D  +Q            
Sbjct: 578 LYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQN----------- 626

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              +  +ID L K G+   A++L  SL   GL+PNVVTY + + +L     +++  DLFL
Sbjct: 627 -RTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFL 685

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV--K 244
            +E  G   +  +   L+    +K E  K    L  +D+ N    AS    +V L+   K
Sbjct: 686 SLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSKIDENNFSLEASTAESLVFLVSSGK 745

Query: 245 NEISLNSIPQFNR 257
            +  +NSIP+  R
Sbjct: 746 YDQHINSIPEKYR 758



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN----PNVVTYNSLIHGFCYANDG 67
           C PN  +YN ++ GLC E    +A  L   M  ++      P+VV+Y ++I+G       
Sbjct: 163 CTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQL 222

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           ++A  LF EM+D+G+  + +T+N ++   C + K  EA  +   M + GV PD      +
Sbjct: 223 DKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPD------V 276

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  L+  LCK G+   AR++  S+ + G  P+   Y   +H    +  + + H L   
Sbjct: 277 VTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDV 336

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M   G  P+  IF  L+ ++ +     + +     M ++ + P       ++D L +   
Sbjct: 337 MVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGK 396

Query: 248 SLNSIPQFNR 257
             +++ QF+R
Sbjct: 397 VDDAMSQFDR 406



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 123/250 (49%), Gaps = 11/250 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
             +T++ ++ GLC +     A ++ L+ M      PN  +YN L+ G C  N   +A +L
Sbjct: 130 QAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHL 189

Query: 74  FIEMM----DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
              MM      G   DVV++  +++ L +  ++D+A  L D M+  G+ P      N + 
Sbjct: 190 LHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSP------NCIT 243

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y CL+ G C  GK K A  + + + R G+ P+VVTYN  +  LC + +  +A  +F  M 
Sbjct: 244 YNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMV 303

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
            KG  P+  I+ TL+  +  +    ++ +LL  M +    P   I +I++    K+ +  
Sbjct: 304 KKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVD 363

Query: 250 NSIPQFNRQK 259
            ++  F++ +
Sbjct: 364 EAMLAFSKMR 373



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 41/268 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---------- 62
           +P+ VTYNT++  LCK G   +A+++F  M  +   P+   Y +L+HG+           
Sbjct: 273 EPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQ 332

Query: 63  -----------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                  YA  G  +EA   F +M  +GL  ++VT+  +MD LC
Sbjct: 333 LLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALC 392

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +  K+D+A    D +I  G+ P      N V +  LI GLC   K   A EL+  +   G
Sbjct: 393 RVGKVDDAMSQFDRLISEGLTP------NGVVFRTLIHGLCACDKWDKAEELAVEMIGRG 446

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PN + +N  ++ LC +  + +A ++F  M    V  + + +TTL+  +    +  +  
Sbjct: 447 ICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEAT 506

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +LL  M    V P     + I++   KN
Sbjct: 507 KLLEGMVLDGVKPNEVTYNTIINGYCKN 534



 Score = 41.6 bits (96), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           ++  Y  +I    + G L  A      + R G     +T++  +  LC+D++   A D+ 
Sbjct: 95  DLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIA 154

Query: 186 L-DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM---DKRNVMP--YASILSIIV 239
           L  M   G  PN   +  L+     +N + + + LL +M   D R   P    S  ++I 
Sbjct: 155 LRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVIN 214

Query: 240 DLLVKNEI 247
            LL + ++
Sbjct: 215 GLLREGQL 222


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 124/209 (59%), Gaps = 8/209 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VTYNT++DGLCK G + +A++L  +MK     P+VV Y+S ++G C +    +A  
Sbjct: 184 KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQ 243

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M D     +VVT+N I+D LCK+ K+D A  +++ M          C +N+V Y  
Sbjct: 244 VLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS-----SDGCGLNVVGYST 298

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DGLCK+G+ + AR + +++ RAG  P+VVTY+  ++ LC   ++++A +   +M ++G
Sbjct: 299 VVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG 358

Query: 193 VAPNCVIFTTLMPSFI---RKNETSKVIE 218
             PN V + +L+       R  E  +++E
Sbjct: 359 CKPNAVTYCSLVHGLCSCGRLAEAERMVE 387



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 119/236 (50%), Gaps = 8/236 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+VT+N +++G  K+G     + L   M   +I PNVV+YN L+ G C     +EAE
Sbjct: 6   CPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAE 65

Query: 72  YLFIEMMDRGLQS--DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            L  +M+ RG +S  D+VT++ ++   CK  K++E+  LL  +I  G+RPDA     +VA
Sbjct: 66  ELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVA 125

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
                  LCK  +L  A EL + + RAG  P ++T+N  I   C ++ ++ A  L   M 
Sbjct: 126 ------SLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMA 179

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             GV  + V + TLM    +     +  +LL  M      P     S  V  L K+
Sbjct: 180 ASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKS 235



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 20/250 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y++ + GLCK G V  A ++  QM+D + +PNVVTYN+++ G C +   + A 
Sbjct: 218 CAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTA- 276

Query: 72  YLFIEMMDRGLQSD-----VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              +EMM++   SD     VV ++ ++D LCK  +  EA  +++ M + G RPD      
Sbjct: 277 ---LEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPD------ 327

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  L++GLCK GK++ A E  + +   G  PN VTY   +H LC+  ++ +A  +  
Sbjct: 328 VVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVE 387

Query: 187 DM-----EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           +M           P+   +  L+    +       ++  + M  +   P     S IV+ 
Sbjct: 388 EMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEG 447

Query: 242 LVKNEISLNS 251
           L ++  +L +
Sbjct: 448 LARSGRALQA 457



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 128/267 (47%), Gaps = 42/267 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN----------------------- 50
           P+ VTY+T++ G CK G V++++EL  ++    + P+                       
Sbjct: 80  PDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALEL 139

Query: 51  ------------VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                       ++T+N+LI G C   +   A+ L  +M   G+++DVVT+N +MD LCK
Sbjct: 140 LEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCK 199

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             ++ EA +LL+ M   G  PD      +VAY   + GLCK GK+ +A ++ + +  +  
Sbjct: 200 AGRLQEAEQLLERMKASGCAPD------VVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHH 253

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVI 217
            PNVVTYN  +  LC   ++D A ++   M    G   N V ++T++    +   T +  
Sbjct: 254 DPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEAR 313

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++ +M +    P     S +V+ L K
Sbjct: 314 SVMEAMARAGCRPDVVTYSSLVNGLCK 340



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 76/135 (56%), Gaps = 9/135 (6%)

Query: 78  MDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           MDR G   + VTFN +++   K  +  +  RLL+ M    ++P      N+V+Y  L++G
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQP------NVVSYNGLLEG 54

Query: 137 LCKIGKLKNARELSQSL-TRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           LCK+ +   A EL + + +R G   P++VTY+  +   C   +++++ +L  ++  +G+ 
Sbjct: 55  LCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLR 114

Query: 195 PNCVIFTTLMPSFIR 209
           P+ +++T ++ S  +
Sbjct: 115 PDALMYTKVVASLCK 129



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN-----PNVVTYNSLIHGFCYAND 66
           CKPN VTY +++ GLC  G + +A+ +  +M           P+V TYN+LI G C A  
Sbjct: 359 CKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGR 418

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
            ++A   F  M  +G   D V+++ I++ L ++ +  +A  +L 
Sbjct: 419 IDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILS 462



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 40/66 (60%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYN +I GLCK G +D A + F +M+ +  +P+ V+Y++++ G   +    +AE
Sbjct: 399 CPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAE 458

Query: 72  YLFIEM 77
            +  E+
Sbjct: 459 MILSEV 464


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 6/242 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N   G    P+  TYN +ID LCKEG ++ ++ LF+QM++  ++P+VVTYNSLI G+   
Sbjct: 278 NDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKV 337

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               E   LF EM D G   D++T+N +++  CK  KM  A      M   G++P     
Sbjct: 338 GSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKP----- 392

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V Y  LID  CK G ++ A +L   + R GL+PN  TY   I A C    + +A  L
Sbjct: 393 -NVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKL 451

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             DM   GV  N V +T L+    +     +  E+ RSM K  + P   + + +V   +K
Sbjct: 452 LNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIK 511

Query: 245 NE 246
            E
Sbjct: 512 AE 513



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 10/252 (3%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P+ +TYN +I+  CK   + +A E F +MK+  + PNVVTY++LI  FC       
Sbjct: 353 VGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQG 412

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  LF++M   GL  +  T+  ++D  CK   + EA +LL+ M+Q GV+      +NIV 
Sbjct: 413 AIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVK------LNIVT 466

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+DGLCK G++  A E+ +S+ + G+ PN   Y   +H     E+M+ A  +   M 
Sbjct: 467 YTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMT 526

Query: 190 VKGVAPNCVIFTTLMPSFI--RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              + P+ +++ +++      RK E +K+I  L  M  R +     I + I+D   K   
Sbjct: 527 ECNIKPDLILYGSIIWGHCSQRKLEETKLI--LEEMKSRGISANPVISTTIIDAYFKAGK 584

Query: 248 SLNSIPQFNRQK 259
           S +++  F   +
Sbjct: 585 SSDALNFFQEMQ 596



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 130/245 (53%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY+T+ID  CKEG +  A +LF+ M+   + PN  TY SLI   C A +  EA  
Sbjct: 391 KPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWK 450

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+  G++ ++VT+  ++D LCK  +M EA  +   M++ G+ P      N   Y  
Sbjct: 451 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP------NQQVYTA 504

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G  K  ++++A ++ + +T   + P+++ Y   I   C+  ++++   +  +M+ +G
Sbjct: 505 LVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 564

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           ++ N VI TT++ ++ +  ++S  +   + M    V        +++D L K  I   ++
Sbjct: 565 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAV 624

Query: 253 PQFNR 257
             F R
Sbjct: 625 DYFCR 629



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 117/230 (50%), Gaps = 6/230 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C   +  ++ +     + G +++A E F +M++    P   + N L+H    + +G   
Sbjct: 214 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLV 273

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              F +M+  G+   V T+NV++D LCK   ++ + RL   M + G+ PD      +V Y
Sbjct: 274 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPD------VVTY 327

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDG  K+G L+    L   +   G +P+++TYN  I+  C  E+M +A + F +M+ 
Sbjct: 328 NSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKN 387

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ PN V ++TL+ +F ++      I+L   M +  ++P     + ++D
Sbjct: 388 NGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 29/240 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N VTY  ++DGLCK G + +A+E+F  M  + I+PN   Y +L+HG+  A    +A  
Sbjct: 461 KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 520

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE-------------------ATRLLDLMI 113
           +  +M +  ++ D++ +  I+   C  RK++E                   +T ++D   
Sbjct: 521 ILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYF 580

Query: 114 QGGVRPDAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           + G   DA            E  IV Y  LIDGLCK G ++ A +    +   GL PNV 
Sbjct: 581 KAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVA 640

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            Y   I  LC +  ++ A  LF +M+ +G+ P+   FT L+   ++     + + L+  M
Sbjct: 641 VYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRM 700



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   + N ++  L K G     ++ F  M    I P+V TYN +I   C   D   +  L
Sbjct: 252 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 311

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F++M + GL  DVVT+N ++D   K   ++E   L + M   G  PD      I+ Y  L
Sbjct: 312 FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPD------IITYNGL 365

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CK  K+  A E    +   GL PNVVTY+  I A C +  M  A  LF+DM   G+
Sbjct: 366 INCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGL 425

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM----DKRNVMPYASIL 235
            PN   +T+L+ +  +    ++  +LL  M     K N++ Y ++L
Sbjct: 426 LPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALL 471



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V   TIID   K G    A   F +M+D  +   +VTY  LI G C A     A   F
Sbjct: 568 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYF 627

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+  GLQ +V  +  ++D LCKN  ++ A +L D M   G+ PD      I A+  LI
Sbjct: 628 CRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPD------ITAFTALI 681

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G L+ A  L   +T   +  ++  Y   +       ++ +A   F +M  KG+ 
Sbjct: 682 DGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGIL 741

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           P  V+   L+  + ++ +  + IEL   M++  ++  ++ +   V
Sbjct: 742 PEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITESATMQFPV 786



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y ++IDGLCK   ++ AK+LF +M+   + P++  + +LI G     +  EA  
Sbjct: 636 QPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALV 695

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M +  ++ D+  +  ++    +  ++ +A +  + MI+ G+ P+    I      C
Sbjct: 696 LISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI------C 749

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           L+    K G+L  A EL   + R GL+    T    +
Sbjct: 750 LLREYYKRGQLDEAIELKNEMERMGLITESATMQFPV 786


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 10/235 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  + +  T+N +I+ LCKEG + KAKE    M+   + PNVVTYN++IHG C     
Sbjct: 208 FRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKF 267

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  +F  M D+GL+ D  T+N  +  LCK  +++EA+ L+  M++GG+ P+A      
Sbjct: 268 QRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNA------ 321

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LIDG C  G L  A      +   G+M ++VTYN+ IHAL  + +M  A ++  +
Sbjct: 322 VTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKE 381

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           M  KG+ P+ V    L+  + R  +  +   LL  M  + + P    Y S++ ++
Sbjct: 382 MREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVL 436



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 9/234 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G++  P+ VT+N +I+G C+ G   +A  L  +M  + I P +VTY SLI+     N
Sbjct: 383 REKGMM--PDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRN 440

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA+ LF ++   GL  D++ FN ++D  C N  +D A +LL  M    V PD     
Sbjct: 441 RMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDE---- 496

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             + Y  L+ G C+ GK++ AR+L   + R G+ P+ ++YN  I        M  A  + 
Sbjct: 497 --ITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVR 554

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSII 238
            +M   G  P  + +  L+    +  E     ELL+ M  + + P  ++ LSII
Sbjct: 555 DEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSII 608



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 48/280 (17%)

Query: 9   GVVCK-------PNTVTYNTIIDGLCKEGFVDKA-----------------------KEL 38
           G++CK       PN VTYN +IDG C +G +DKA                         L
Sbjct: 307 GLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHAL 366

Query: 39  FLQ------------MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV 86
           F++            M+++ + P+ VT+N LI+G+C   D   A  L  EM+ +G+Q  +
Sbjct: 367 FMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTL 426

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           VT+  ++  L K  +M EA  L   + Q G+ PD      I+ +  LIDG C  G +  A
Sbjct: 427 VTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPD------IIVFNALIDGHCANGNIDRA 480

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
            +L + +    ++P+ +TYN  +   C + ++++A  L  +M+ +G+ P+ + + TL+  
Sbjct: 481 FQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISG 540

Query: 207 FIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + ++ +      +   M      P     + ++  L KN+
Sbjct: 541 YSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQ 580



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 6/214 (2%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           T+ ++ ++   C+    ++A E F  +K++   PN+ T N ++  F   N    A  L+ 
Sbjct: 146 TLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYA 205

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           EM    ++S + TFN++++ LCK  K+ +A   +  M   GV+P      N+V Y  +I 
Sbjct: 206 EMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKP------NVVTYNTIIH 259

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           G C  GK + AR + Q++   GL P+  TYN  I  LC + ++++A  L   M   G+ P
Sbjct: 260 GHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVP 319

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           N V +  L+  +  K +  K       M  + +M
Sbjct: 320 NAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIM 353



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 6/159 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +N +IDG C  G +D+A +L  +M +  + P+ +TYN+L+ G+C      EA  L
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQL 518

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG++ D +++N ++    K   M +A R+ D M+  G  P       I+ Y  L
Sbjct: 519 LDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDP------TILTYNAL 572

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
           I GLCK  + ++A EL + +   G+ P+  TY   I A+
Sbjct: 573 IQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAM 611



 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 83/145 (57%), Gaps = 9/145 (6%)

Query: 2   ANGN--REFGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVV 52
           ANGN  R F ++ +       P+ +TYNT++ G C+EG V++A++L  +MK   I P+ +
Sbjct: 473 ANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHI 532

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           +YN+LI G+    D  +A  +  EMM  G    ++T+N ++  LCKN++ + A  LL  M
Sbjct: 533 SYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEM 592

Query: 113 IQGGVRPDAFCEINIVAYGCLIDGL 137
           +  G+ PD    ++I+     +D L
Sbjct: 593 VSKGITPDDSTYLSIIEAMETVDDL 617


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 129/231 (55%), Gaps = 5/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + + Y + I GLCK G +D+AK + ++M +    P+ V+YN +I+  C  N  +EA+ L 
Sbjct: 259 DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELM 318

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            + M+R     V    V++D LCK+R+++EA  +L+ M++ G R       ++V Y  +I
Sbjct: 319 DQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAP-----SVVTYSAVI 373

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK  +L +A  + Q + RAG +P+VVTY   I A C   ++D+A +LF  M  +G A
Sbjct: 374 DGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCA 433

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + V +  L+  + R  +  + I ++  M  R + P    LS IVD L K 
Sbjct: 434 LDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKE 484



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 113/214 (52%), Gaps = 7/214 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YN II  LCK+  V +AKEL  Q  +    P V     L+ G C +    EA 
Sbjct: 291 CAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEAC 350

Query: 72  YLFIEMMDRGLQS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            +   M++ G ++  VVT++ ++D LCK  ++D+A  +L  M + G  PD      +V Y
Sbjct: 351 VILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPD------VVTY 404

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +ID  CK+G+L  AREL Q +   G   +VV YNI I   C   ++D+A  +  +M  
Sbjct: 405 TAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAG 464

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           +G+ PN V  +T++    +++   +   L+  M+
Sbjct: 465 RGIQPNVVSLSTIVDGLCKESRVEEARLLMEKMN 498



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 12/235 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGNEAE 71
           NT T N++++    +G   +A  +F   KDE +    P+  TY +LI GFC A    +A 
Sbjct: 16  NTYTCNSLLEVFVNDGCHREAYRVF---KDELVTLFRPDDFTYGTLIRGFCKAEQIPQAV 72

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM   G+   +VTF  ++ +LC+    D+A ++   MI   V+PDAF       Y 
Sbjct: 73  NLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAF------LYT 126

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  LCKI KL  A    + + ++G +P+ VTY + +H+L    + ++ H +F +M  K
Sbjct: 127 VVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSK 186

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G +P  V + T++  + +     + + L+R +      P  S+ S ++D L K++
Sbjct: 187 GHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHD 241



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 8/226 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY T+I G CK   + +A  L  +MK   I P +VT+ SLI   C  N  ++A  
Sbjct: 49  RPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQ 108

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M+D  ++ D   + V++  LCK  K+D A    + M+Q G  PD       V Y  
Sbjct: 109 IFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDK------VTYTV 162

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L K  K +   ++ + +   G  P +VTY   ++  C   ++D+A  L   ++  G
Sbjct: 163 LVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTG 222

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIEL--LRSMDKRNVMPYASILS 236
            +P+  +++TL+    + +   +  EL  + + D ++V+ Y S +S
Sbjct: 223 RSPSGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQDVIVYTSFIS 268



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 8/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   Y  +I  LCK   +D A   F +M      P+ VTY  L+H    A    +   
Sbjct: 119 KPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQ 178

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM+ +G   ++VT+  +++  CK  ++D+A  L+  +   G  P          Y  
Sbjct: 179 IFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSG------SLYST 232

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK  +   AREL +    AG + +V+ Y   I  LC   ++D+A  + + M   G
Sbjct: 233 LIDGLCKHDRHDEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAG 290

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            AP+ V +  ++ S  + N  S+  EL+    +R  MP   + +++VD L K+
Sbjct: 291 CAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKS 343


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y+ IIDGL K+G    A+ LF +M+++ I+PN+ TYN +I+GFC +   +EA+ 
Sbjct: 245 KPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQR 304

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM +R +  DVVTF+V+++ L K  K  EA  L + M+  G+ P      N + Y  
Sbjct: 305 LLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIP------NTITYNS 358

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG  K  +L  A  +   +   G  P+V+T++I I   C  +++D    L  +M  +G
Sbjct: 359 MIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRG 418

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N + +TTL+  F +    +  ++LL+ M    V P     + ++D L  N
Sbjct: 419 LVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNN 471



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +T++ +IDG C    VD   +L  +M    +  N +TY +LIHGFC   + N A 
Sbjct: 384 CSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAAL 443

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-----CEIN 126
            L  EM+  G+  +VVT N ++D LC N K+ +A  +  +M +  +  DA       E +
Sbjct: 444 DLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPD 503

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LI GL   GK   A EL + +   GL+P+ +TYN  I  LC   ++D+A  +F 
Sbjct: 504 VQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFD 563

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
            M  KG +P+ V FTTL+  + +       +E+   M +R ++  A
Sbjct: 564 SMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANA 609



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 18/221 (8%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIH 59
           VC PN VT NT++DGLC  G +  A E+F  M+             ++ P+V TYN LI 
Sbjct: 454 VC-PNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILIC 512

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G       +EAE L+ EM  RGL  D +T+N ++D LCK  ++DEAT++ D M   G  P
Sbjct: 513 GLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSP 572

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           D      +V +  LI+G CK+G++ +  E+   + R G++ N +TY   IH  C    ++
Sbjct: 573 D------VVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNIN 626

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            A D+F +M   GV P+ +    ++     K E  + ++ L
Sbjct: 627 GALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 126/234 (53%), Gaps = 7/234 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F  +CKPN + + T+++GLC+EG V +A  L  +M ++ + PN +TY +++ G C   D 
Sbjct: 169 FHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 228

Query: 68  NEAEYLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             A  L  +M +   ++ +VV ++ I+D L K+ +  +A  L   M + G+ P      N
Sbjct: 229 VSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISP------N 282

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y C+I+G C  G+   A+ L + +    + P+VVT+++ I+AL  + +  +A +L+ 
Sbjct: 283 LFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYN 342

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +M  +G+ PN + + +++  F ++N       +   M  +   P     SI++D
Sbjct: 343 EMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILID 396



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  ++  +I   C    +  A   F ++     +P++VT+++L+HG C  +  +EA + F
Sbjct: 110 NIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFF 169

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            ++     + +V+ F  +M+ LC+  ++ EA  LLD M++ G++P      N + YG ++
Sbjct: 170 HQI----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQP------NQITYGTIV 219

Query: 135 DGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           DG+CK+G   +A  L + +     + PNVV Y+  I  L  D +   A +LF +M+ KG+
Sbjct: 220 DGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGI 279

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +PN   +  ++  F      S+   LLR M +R + P     S++++ LVK
Sbjct: 280 SPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVK 330


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 124/235 (52%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN + YNTIID LCK+  V +A  LF +M  + I+P++ TYNSLIH  C   +     
Sbjct: 248 CRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVT 307

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM++  +  +VV F+ ++D LCK   +  A  ++D+MI+ GV PD      +V Y 
Sbjct: 308 TLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPD------VVTYT 361

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG C   ++  A ++  ++   G +PNV +YNI I+  C  ++MDKA  L   M ++
Sbjct: 362 ALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ 421

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G+  + V + TL+            I L   M     +P      I++D L KN 
Sbjct: 422 GLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNH 476



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  T+NT+I GLC EG + +A  LF +   E   P+VVTY +L++G C   + + A 
Sbjct: 178 CQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAI 237

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+ +  + +V+ +N I+D LCK+R++ EA  L   MI  G+ PD F       Y 
Sbjct: 238 RLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIF------TYN 291

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC + + K+   L   +  + +MPNVV ++  + ALC +  +  AHD+   M  +
Sbjct: 292 SLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKR 351

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           GV P+ V +T LM     ++E  + +++  +M  +  +P     +I+++
Sbjct: 352 GVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILIN 400



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 121/244 (49%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+TV +  ++  + K         L  QM    I P+V T N LI+ 
Sbjct: 97  LSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINS 156

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+      A  +  +++  G Q D  TFN ++  LC   K+ EA  L D  I  G +PD
Sbjct: 157 FCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPD 216

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +V YG L++GLCK+G    A  L +S+ +    PNV+ YN  I +LC D Q+ +
Sbjct: 217 ------VVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 270

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF +M  KG++P+   + +L+ +     E   V  LL  M    +MP   + S +VD
Sbjct: 271 AFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVD 330

Query: 241 LLVK 244
            L K
Sbjct: 331 ALCK 334



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 84/147 (57%), Gaps = 6/147 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  +YN +I+G C+   +DKA  L  QM  + +  + VTYN+LIHG C+      A 
Sbjct: 388 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAI 447

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G   D+VT+ +++D LCKN  + EA  LL  +   G   DA    +I+ Y 
Sbjct: 448 ALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI--EGSNLDA----DILVYN 501

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGL 158
             IDG+C+ G+L+ AR+L  +L+  G 
Sbjct: 502 IAIDGMCRAGELEAARDLFSNLSCQGF 528



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 6/184 (3%)

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
           + N  ++A   F  M+        V F  ++  + K +       L   M   G+ PD +
Sbjct: 89  HFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVY 148

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
             +NI     LI+  C + +L  A  +   L + G  P+  T+N  I  LC + ++ +A 
Sbjct: 149 -TLNI-----LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEAL 202

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF     +G  P+ V + TLM    +   TS  I LLRSM ++N  P     + I+D L
Sbjct: 203 HLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSL 262

Query: 243 VKNE 246
            K+ 
Sbjct: 263 CKDR 266


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN II  LCKE  VD+A E+   +  + I P+V T+NSLI G C +++   A 
Sbjct: 374 CSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAM 433

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G + D  T+N+++D LC +RK++EA  LL  M   G      C  N+V Y 
Sbjct: 434 DLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG------CARNVVIYN 487

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK  +++ A E+   +   G+  + VTYN  I  LC  ++++ A  L   M ++
Sbjct: 488 TLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIME 547

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           G+ P+   + +L+  F +  +  K  +++++M      P    YA+++S
Sbjct: 548 GLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLIS 596



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C+P+  TYN +ID LC    +++A  L  +M+      NVV YN+LI GFC      
Sbjct: 441 GKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIE 500

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EAE +F EM  +G+  D VT+N ++D LCK++++++A +L+D MI  G+RPD F      
Sbjct: 501 EAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKF------ 554

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+   CK G +K A ++ Q++T +G  P++VTY   I  LC   ++  A  L   +
Sbjct: 555 TYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSI 614

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           ++KG+      +  ++ +  ++N T + + L R M  ++  P A    I+
Sbjct: 615 QMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIV 664



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYNT+++GLCK G    A E+   M    ++P++ TYNSLI G C   +  EA  
Sbjct: 305 RPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVK 364

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+ R    + VT+N I+  LCK  ++DEAT +  L+   G+ PD      +  +  
Sbjct: 365 ILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPD------VCTFNS 418

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC     K+A +L + +   G  P+  TYN+ I +LC+  ++++A +L  +ME+ G
Sbjct: 419 LIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG 478

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            A N VI+ TL+  F +     +  E+   M+ + V   +   + ++D L K++
Sbjct: 479 CARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSK 532



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 12/233 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+G  C    VT N +I+G CK+G +D+A     +   E   P+  TYN+L++G C    
Sbjct: 266 EYGCPC--TDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGH 323

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              A  +   M+  GL  D+ T+N ++  LCK  +++EA ++LD M+     P+A     
Sbjct: 324 AKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNA----- 378

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  +I  LCK  ++  A E+++ LT  G++P+V T+N  I  LC       A DLF 
Sbjct: 379 -VTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFE 437

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
           +M+ KG  P+   +  L+ S     +  + + LL+ M+     RNV+ Y +++
Sbjct: 438 EMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLI 490



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+ TI+ G  + G +D A  +  QM +       VT N LI+GFC     ++A   
Sbjct: 236 PDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSF 295

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E +  G + D  T+N +++ LCK      A  ++D M+ GG+ PD      I  Y  L
Sbjct: 296 IQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPD------IYTYNSL 349

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK+G+++ A ++   +      PN VTYN  I +LC + ++D+A ++   +  KG+
Sbjct: 350 ISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGI 409

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            P+   F +L+      +     ++L   M  +   P     ++++D L
Sbjct: 410 LPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSL 458



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T+N +I  LCK   V  A  +  +M    ++P+  T+ +++ G+    + + A  +  +M
Sbjct: 205 TFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQM 264

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++ G     VT NV+++  CK  ++D+A   +   +  G RPD F       Y  L++GL
Sbjct: 265 VEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQF------TYNTLVNGL 318

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CKIG  K+A E+  ++   GL P++ TYN  I  LC   ++++A  +   M  +  +PN 
Sbjct: 319 CKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNA 378

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V +  ++ S  ++N   +  E+ R +  + ++P
Sbjct: 379 VTYNAIISSLCKENRVDEATEIARLLTSKGILP 411



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 30/233 (12%)

Query: 42  MKDE-NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           M+DE  I P+   YN L++    AN     E     M+ R ++ DV TFN+++  LCK  
Sbjct: 158 MEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAH 217

Query: 101 KMDEATRLLDLMIQGGVRPD--AFCEI------------------NIVAYGC-------- 132
           ++  A  +++ M   G+ PD   F  I                   +V YGC        
Sbjct: 218 QVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVN 277

Query: 133 -LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G CK G++  A    Q     G  P+  TYN  ++ LC       A ++   M + 
Sbjct: 278 VLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLG 337

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P+   + +L+    +  E  + +++L  M  R+  P A   + I+  L K
Sbjct: 338 GLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCK 390



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 11/132 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           C P+ VTY T+I GLCK G V  A  L   +QMK   + P+   YN +I      N  +E
Sbjct: 584 CNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPH--AYNPVIQALFKRNRTHE 641

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           A  LF EM+D+    D +T+ ++   LC     + EA      MI+ G  P+        
Sbjct: 642 AMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPE------FS 695

Query: 129 AYGCLIDGLCKI 140
           ++  L +GLC +
Sbjct: 696 SFVMLAEGLCTL 707



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+V  P+   YN +I  L K     +A  LF +M D++  P+ +TY  +  G C  N G 
Sbjct: 618 GMVLTPHA--YNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLC--NGGG 673

Query: 69  ---EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA    +EM++RG   +  +F ++ + LC     D   +L+D++++       F E 
Sbjct: 674 PIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIMEKA----KFSER 729

Query: 126 NIVAYGCLIDGLCKIGKLKNA 146
            I      I G  KI K ++A
Sbjct: 730 EIST----IRGFLKIRKFQDA 746


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  146 bits (369), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  KPN V YNTIIDGLCK   VD A +L  +M+ + I P+VVTYNSLI G C +   +
Sbjct: 179 GMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWS 238

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +   M  R +  DV TFN ++D   K  ++ EA    + MI+  + PD      IV
Sbjct: 239 DATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPD------IV 292

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI GLC   +L  A E+   +   G  P+VVTY+I I+  C  ++++    LF +M
Sbjct: 293 TYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             +GV  N V +T L+  + R  + +   E+ R M    V P
Sbjct: 353 SQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHP 394



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+ ++++G C+   V  A  +F QM      PNVV YN++I G C +   + A  
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALD 207

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M   G+  DVVT+N ++  LC + +  +ATR++  M +  + PD F       +  
Sbjct: 208 LLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVF------TFNA 261

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G++  A E  + + R  L P++VTY++ I+ LC   ++D+A ++F  M  KG
Sbjct: 262 LIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG 321

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             P+ V ++ L+  + +  +    ++L   M +R V+      +I++
Sbjct: 322 CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILI 368



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 6/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY+ +I+G CK   V+   +LF +M    +  N VTY  LI G+C A   N AE
Sbjct: 322 CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAE 381

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M+  G+  +++T+NV++  LC N K+++A  +L  M + G+  D      IV Y 
Sbjct: 382 EIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDAD------IVTYN 435

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+CK G++ +A ++  SL   GLMP++ TY   +  L       +A  LF  M+  
Sbjct: 436 IIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKED 495

Query: 192 GVAPN 196
           G+ PN
Sbjct: 496 GILPN 500



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 112/226 (49%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   ++ ++  + K    D    L+ QM+   I  N+ T N L++ FC  +  + A   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G +  +VTF  +++  C+  ++ +A  + D M+  G +P      N+V Y  +
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKP------NVVIYNTI 192

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  ++ NA +L   + + G+ P+VVTYN  I  LC+  +   A  +   M  + +
Sbjct: 193 IDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREI 252

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+   F  L+ + +++   S+  E    M +R++ P     S+++
Sbjct: 253 YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 6/213 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D + +LF  M      P++  ++ L+         +   YL+ +M   G+  ++ T N+
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C+  ++  A   L  MI+ G  P      +IV +G L++G C+  ++ +A  +  
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEP------SIVTFGSLLNGFCRGDRVYDALYMFD 175

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  PNVV YN  I  LC  +Q+D A DL   ME  G+ P+ V + +L+       
Sbjct: 176 QMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSG 235

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             S    ++  M KR + P     + ++D  VK
Sbjct: 236 RWSDATRMVSCMTKREIYPDVFTFNALIDACVK 268



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 21/202 (10%)

Query: 58  IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           I GFC++         + EM+  G+               +  K+D++  L   M+Q   
Sbjct: 33  ICGFCFSRRAYSNGSDYREMLRNGI---------------RFMKLDDSLDLFFHMVQCRP 77

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
            P      +I  +  L+  + K+ K      L + +   G+  N+ T NI ++  C   Q
Sbjct: 78  LP------SIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQ 131

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +  A      M   G  P+ V F +L+  F R +     + +   M      P   I + 
Sbjct: 132 LSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNT 191

Query: 238 IVDLLVKNEISLNSIPQFNRQK 259
           I+D L K++   N++   NR +
Sbjct: 192 IIDGLCKSKQVDNALDLLNRME 213


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +   YN ++DGLCK+G V +A +LF QM  + I P++ TYN LIHG C  +   EA 
Sbjct: 214 CNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAA 273

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM +G+  DV TFNVI     K   +  A  +   M   G+  D      +V Y 
Sbjct: 274 PLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHD------VVTYS 327

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I   C + ++K+A E+   + R G +PN+VTY   IH  C  + M+KA     +M   
Sbjct: 328 SIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNN 387

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ PN V + TL+  F +  +     EL   M K   +P     +II+D L K      +
Sbjct: 388 GLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEA 447

Query: 252 IPQF 255
           +  F
Sbjct: 448 MSLF 451



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY ++I G C+   ++KA     +M +  ++PN+VT+N+LI GFC A     A+
Sbjct: 354 CLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAK 413

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M   G   D+ T  +I+D L K     EA  L   + +         +++I+ Y 
Sbjct: 414 ELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMN------SDLDIIIYS 467

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +++G+C  GKL +A EL   L+  G+  +VVTYNI I+ LC +  +D A DL + ME  
Sbjct: 468 IILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEEN 527

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  P+   +   +   +R+ E SK  + L  M  +     A+   ++++    N+
Sbjct: 528 GCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFSANK 582



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  T+N +I+ LC+         +   M    + P++VT+ ++++G C   +  +A  
Sbjct: 110 KPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIR 169

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               + D G +SD  T   I++ LCK      A   L  M       +  C +++ AY  
Sbjct: 170 FVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKM------EEQNCNLDVTAYNA 223

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DGLCK G +  A +L   +T  G+ P++ TYN  IH LCN ++  +A  L  +M  KG
Sbjct: 224 VVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKG 283

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASILSI 237
           + P+   F  +   F++    S+   +   M     + +V+ Y+SI+ +
Sbjct: 284 IMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGV 332



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N +   + K      A  L   M    + PNV T+N +I+  C  N       +
Sbjct: 76  PCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVINCLCRLNHTVFGFSV 135

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G++  +VTF  I++ LC    + +A R +D +   G   D +        G +
Sbjct: 136 LGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTR------GAI 189

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+G    A    + +       +V  YN  +  LC D  + +A DLF  M  KG+
Sbjct: 190 INGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGI 249

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   +  L+      +   +   LL +M ++ +MP     ++I    +K
Sbjct: 250 QPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLK 300



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 52/89 (58%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VTYN +I+GLCKEG +D A++L ++M++    P+  TYN  + G     + +++  
Sbjct: 495 KIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTK 554

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
             + M  +G +++  T  ++++    N++
Sbjct: 555 YLMFMKGKGFRANATTTKLLINYFSANKE 583


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 133/237 (56%), Gaps = 10/237 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ +TYNT+I+  CK G + K  E F +MK   + PNVV+Y++L+  FC  +   +A 
Sbjct: 199 CEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAL 258

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +++M   GL  +  T+  ++D  CK   + +A RL D M Q GV      E N+V Y 
Sbjct: 259 KFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGV------EWNVVTYT 312

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLC + ++K A EL   +  AG++PN+ +Y   IH     + MD+A +L  +M+ +
Sbjct: 313 ALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGR 372

Query: 192 GVAPNCVIFTTLMPSF--IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G+ P+ +++ T + S   + K E +KV+  +  M ++ +     I + ++D   K+E
Sbjct: 373 GIKPDLLLYGTFIWSLCGLEKIEAAKVV--MNEMQEKGIKANTFIYTTLMDAYFKSE 427



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 125/251 (49%), Gaps = 29/251 (11%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   KP   TYN +ID +CKEG ++ A  LF +MK   + P+ VTYNS+I G+      +
Sbjct: 126 GAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD 185

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------- 119
           +  Y F EM     + DV+T+N +++  CK  K+ +       M Q G++P         
Sbjct: 186 DTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLV 245

Query: 120 DAFCEINIV--------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           DAFC+ +++                     Y  L+D  CKIG L +A  L+  +++ G+ 
Sbjct: 246 DAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVE 305

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            NVVTY   I  LC+ E++ +A +LF  M   GV PN   +T L+  F++     + +EL
Sbjct: 306 WNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALEL 365

Query: 220 LRSMDKRNVMP 230
           L  M  R + P
Sbjct: 366 LDEMKGRGIKP 376



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 6/234 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P    ++ +   L +E   ++A + F +MK   + P   + N L+H F      +  
Sbjct: 58  VCVPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGM 117

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           +  F +M+  G +  V T+N+++D +CK   ++ A+ L + M   G+ PD       V Y
Sbjct: 118 KRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDT------VTY 171

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDG  K+G+L +     + +      P+V+TYN  I+  C   ++ K  + F +M+ 
Sbjct: 172 NSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQ 231

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G+ PN V ++TL+ +F +++   + ++    M +  ++P     + +VD   K
Sbjct: 232 SGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCK 285



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 30/239 (12%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTY  +IDGLC    + +A+ELF +M    + PN+ +Y +LIHGF  A + + A  L 
Sbjct: 307 NVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELL 366

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC----------- 123
            EM  RG++ D++ +   +  LC   K++ A  +++ M + G++ + F            
Sbjct: 367 DEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKS 426

Query: 124 ------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-GLMPNVVT 164
                             E+  V +  LIDGLCK   +  A +    ++   GL  N   
Sbjct: 427 ENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAI 486

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           Y   I  LC ++Q++ A  LF  M  KG+ P+   +T+L+   +++    + + L   M
Sbjct: 487 YTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKM 545



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 1/107 (0%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            VT+  +IDGLCK   V KA + F ++  D  +  N   Y ++I G C  +    A  LF
Sbjct: 448 AVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLF 507

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            +M  +GL  D   +  ++D   K   + +A  L D M + GV   A
Sbjct: 508 EQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVESGA 554



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 42/182 (23%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG------------ 60
           KP+ + Y T I  LC    ++ AK +  +M+++ I  N   Y +L+              
Sbjct: 375 KPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLH 434

Query: 61  ----------------FCYANDG--------NEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                           FC   DG           +Y      D GLQ++   +  ++D L
Sbjct: 435 LLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGL 494

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK  +++ AT L + M Q G+ PD        AY  LIDG  K G +  A  L   +   
Sbjct: 495 CKEDQVEAATTLFEQMAQKGLVPDR------TAYTSLIDGKLKQGNVVQALALRDKMAEI 548

Query: 157 GL 158
           G+
Sbjct: 549 GV 550



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG+  + N   Y  +IDGLCKE  V+ A  LF QM  + + P+   Y SLI G     +
Sbjct: 477 DFGL--QANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGN 534

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99
             +A  L  +M + G++S          +LC+N
Sbjct: 535 VVQALALRDKMAEIGVES-----GARFGDLCQN 562


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 117/216 (54%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   +Y  +IDGLCK   VD+A  LF +MK +N+ PN +T+NSLI G C +        L
Sbjct: 347 PGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDL 406

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M DR   +DV+T++ ++D LCKN  +D+A  L   MI   ++PD +       Y  L
Sbjct: 407 VDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMY------TYTIL 460

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+LK A+E+ Q L   G   ++ TY + I   C     D+A  L   ME  G 
Sbjct: 461 IDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGC 520

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN + F  ++ +   K+E  K  +LLR M  R ++
Sbjct: 521 IPNAITFDIIICALFEKDENDKAEKLLREMIARGLL 556



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 130/233 (55%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN IID LCK   V +A  L+ +M  + I PNVVTY +LI+GFC      EA  
Sbjct: 206 KPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVA 265

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  + +  DV TF++++D L K  KM  A  +L +M++  V+PD      +V Y  
Sbjct: 266 LLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPD------VVTYNS 319

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG   + ++K+A+ +  S+ ++G+ P V +Y I I  LC  + +D+A  LF +M+ K 
Sbjct: 320 LVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKN 379

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PN + F +L+    +    + V +L+  M  R+ +      S ++D L KN
Sbjct: 380 VIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKN 432



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 117/255 (45%), Gaps = 29/255 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T++ +ID L KEG +  AK +   M    + P+VVTYNSL+ G+   N+   A+Y+
Sbjct: 277 PDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYV 336

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
           F  M   G+   V ++ +++D LCK + +DEA  L + M    V P         D  C+
Sbjct: 337 FNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCK 396

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                +++ Y  LID LCK   L  A  L + +    + P++ T
Sbjct: 397 SGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYT 456

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y I I  LC   ++  A ++F  + +KG   +   +T ++  F +     + + LL  M+
Sbjct: 457 YTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKME 516

Query: 225 KRNVMPYASILSIIV 239
               +P A    II+
Sbjct: 517 DNGCIPNAITFDIII 531



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 121/240 (50%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   +   P T  +N I+  L K      A  L   +  + I  ++VT N LI+ FC+ 
Sbjct: 58  NRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHL 117

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                +  +   ++ RG   DV+T   ++  LC   ++ +A +  D ++    + D    
Sbjct: 118 GQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDR--- 174

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
              ++YG LI+GLCKIG+ K A +L ++L    + P+VV YNI I +LC ++ + +A +L
Sbjct: 175 ---ISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNL 231

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + +M  K + PN V +TTL+  F       + + LL  M  +N+ P     SI++D L K
Sbjct: 232 YSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGK 291



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +T  T+I GLC  G V KA +    +       + ++Y +LI+G C   +   A  L
Sbjct: 137 PDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQL 196

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              + +R ++ DVV +N+I+D LCKN+ + EA  L   M    + P      N+V Y  L
Sbjct: 197 MRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYP------NVVTYTTL 250

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C +G L  A  L   +    + P+V T++I I AL  + +M  A  +   M    V
Sbjct: 251 IYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYV 310

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V + +L+  +   NE      +  SM +  V P     +I++D L K ++   +I 
Sbjct: 311 KPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAIS 370

Query: 254 QFNRQK 259
            F   K
Sbjct: 371 LFEEMK 376



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 61/105 (58%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY  +IDGLCK G +  A+E+F  +  +  + ++ TY  +I GFC A   +EA  
Sbjct: 451 QPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALA 510

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           L  +M D G   + +TF++I+  L +  + D+A +LL  MI  G+
Sbjct: 511 LLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARGL 555



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 6/183 (3%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           ND N+A  LF  M+          FN I+  L K ++   A  L   +   G+  D    
Sbjct: 48  NDHNDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSD---- 103

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             +V    LI+  C +G++  +  +  ++ + G  P+V+T    I  LC   ++ KA   
Sbjct: 104 --LVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKF 161

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             D+       + + + TL+    +  ET   I+L+R++++R++ P   + +II+D L K
Sbjct: 162 HDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCK 221

Query: 245 NEI 247
           N++
Sbjct: 222 NKL 224


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 7/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY T+IDGLCK G +D A+ L  +M D    PNVVTY +LI G C A   ++A    
Sbjct: 44  SVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTV 103

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCL 133
             M+  G + D+VT+N ++  LC   +MD+A  +L +LMI+ G  PD      +V Y   
Sbjct: 104 KRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPD------VVTYNTF 157

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK GKL    E+ + + R G+ P+VVT+   I  LC   ++D A  +F  M  +G 
Sbjct: 158 ISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGC 217

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ + ++ ++ +  R N    V E+L  M K      ++  + ++  L++
Sbjct: 218 VPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIR 268



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +   YNT+I GLCK      A EL   M     + +VVTY +LI G C + D + A+ L 
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M D G   +VVT+  ++D LCK R+  +A + +  M++ G  PD      +V Y  LI
Sbjct: 69  QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPD------LVTYNSLI 122

Query: 135 DGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            GLC   ++ +A  + Q L   +G +P+VVTYN  I  LC   ++DK  ++  +M+  G+
Sbjct: 123 HGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGI 182

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+ V F +++    + N      ++ + M +R  +P +   SI++D L +
Sbjct: 183 SPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSR 233



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 122/245 (49%), Gaps = 30/245 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT I GLCK G +DK  E+  +M    I+P+VVT+ S+I G C AN  ++A  +
Sbjct: 149 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQV 208

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG---------------VR 118
           F  M++RG   D +T+++++D L +  ++D    +L+ M++ G               +R
Sbjct: 209 FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIR 268

Query: 119 P--------------DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                          +A C + +  +   I  LC+ GK   A+ +   +  +G +PN+++
Sbjct: 269 AGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLS 328

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVA-PNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           YN  I  LC    +D A  L   M   G   P+ + F TL+  F +    S+  +LL+ M
Sbjct: 329 YNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEM 388

Query: 224 DKRNV 228
             +N+
Sbjct: 389 KAKNI 393



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 7/202 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGLCK      A +   +M      P++VTYNSLIHG C AN  ++A 
Sbjct: 76  CAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAG 135

Query: 72  YLFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            +  E+M + G   DVVT+N  +  LCK  K+D+   +L+ M +GG+ PD      +V +
Sbjct: 136 LVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPD------VVTF 189

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I GLCK  ++ +A ++ + +   G +P+ +TY+I +  L    ++D   ++   M  
Sbjct: 190 CSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVK 249

Query: 191 KGVAPNCVIFTTLMPSFIRKNE 212
            G       +  L+ + IR  +
Sbjct: 250 SGHYALSATYAPLIHALIRAGD 271



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 8/208 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M   +   +   YN+LI G C A     A  L   M   G  + VVT+  ++D LCK+  
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +D A  LL  M       DA C  N+V Y  LIDGLCK  +  +A +  + + R+G  P+
Sbjct: 61  LDAAQALLQKM------ADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPD 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +VTYN  IH LC   +MD A  +  ++ ++ G  P+ V + T +    +  +  K +E+L
Sbjct: 115 LVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEML 174

Query: 221 RSMDKRNVMP-YASILSIIVDLLVKNEI 247
             MD+  + P   +  SII  L   N I
Sbjct: 175 EEMDRGGISPDVVTFCSIISGLCKANRI 202



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 8/195 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+++TY+ ++D L +   +D  +E+   M          TY  LIH    A D   A 
Sbjct: 217 CVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESAS 276

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           + + + M+ G   +V T N  +  LC++ K   A  +L  MI+ G  P      N+++Y 
Sbjct: 277 WAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLP------NLLSYN 330

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            +IDGLCK G + +A +LS+ +  +G   P+V+ +N  I   C   ++ +A  L  +M+ 
Sbjct: 331 FVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKA 390

Query: 191 KGV-APNCVIFTTLM 204
           K +  P+ V + T++
Sbjct: 391 KNICVPDVVTYNTMI 405



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C     T+N  I  LC+ G    AK + L M +    PN+++YN +I G C + + ++A 
Sbjct: 287 CVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAW 346

Query: 72  YLFIEMMDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            L  +M+D G  + DV+ FN ++   CK  ++ +A +LL  M     +    C  ++V Y
Sbjct: 347 KLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEM-----KAKNICVPDVVTY 401

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAG 157
             +IDG  K G LK A+ L + +   G
Sbjct: 402 NTMIDGQSKFGSLKQAKLLLEEMQAVG 428



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 90/178 (50%), Gaps = 6/178 (3%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           + TY  +I  L + G ++ A   + Q  +      V T+N+ I   C +     A+ + +
Sbjct: 256 SATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILL 315

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
            M++ G   +++++N ++D LCK+  +D+A +L   M+  G      C+ +++ +  LI 
Sbjct: 316 GMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGC-----CKPDVIFFNTLIS 370

Query: 136 GLCKIGKLKNARELSQSLTRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           G CK G+L  A++L + +    + +P+VVTYN  I        + +A  L  +M+  G
Sbjct: 371 GFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428


>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 805

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 124/218 (56%), Gaps = 14/218 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--------PNVVTYNSLIHGFCYAN 65
           PN  T+N ++D LCK+G + +AK + ++M DE +N        PN V+YN+LI GFC + 
Sbjct: 385 PNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSG 444

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A  L  +M DRG   +V+T+N ++  LCKN  +D+A  L++     G++PD     
Sbjct: 445 RLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPD----- 499

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +  Y  L+DGLCK G+LK+A+ + Q L   G      TYNI I+ LC +  +D+A  L 
Sbjct: 500 -MHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLL 558

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             ME  G  P+ V + T++ +   K+E  K  +L+R +
Sbjct: 559 SKMEDNGCIPDVVTYQTIIHALFEKDENDKAEKLVREL 596



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 104/181 (57%), Gaps = 8/181 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTV+YNT+IDG CK G +  A +L  QM+D    PNV+TYNSL+H  C  +  ++A 
Sbjct: 426 CKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAI 485

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAY 130
            L     D+G+Q D+ T+N ++D LCK  ++ +A  +  DL+I+G   P          Y
Sbjct: 486 ALVNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPTW-------TY 538

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I+GLC  G L  A  L   +   G +P+VVTY   IHAL   ++ DKA  L  ++ V
Sbjct: 539 NIMINGLCLEGLLDEAETLLSKMEDNGCIPDVVTYQTIIHALFEKDENDKAEKLVRELIV 598

Query: 191 K 191
           +
Sbjct: 599 R 599



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 16/198 (8%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G +   N V Y+T+IDGLCK+  V  A  L+ +M  + I P VVT+              
Sbjct: 324 GKLVNTNVVMYSTVIDGLCKDKLVIDAYGLYSEMIVKRIPPTVVTF-------------- 369

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR--PDAFCEIN 126
           +A  LF EM+ + +  +V TFN+++D LCK+ K+ EA  ++  M+   +    +  C+ N
Sbjct: 370 KAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPN 429

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V+Y  LIDG CK G+L +A +L   +   G  PNV+TYN  +HALC +  +DKA  L  
Sbjct: 430 TVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVN 489

Query: 187 DMEVKGVAPNCVIFTTLM 204
           + + +G+ P+   + TL+
Sbjct: 490 NFKDQGIQPDMHTYNTLV 507



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 23/260 (8%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  +PNT+T  T+I GLC  G V++A      +     + N VTY  LI+G C     
Sbjct: 253 FKMGYEPNTITLTTLIKGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQT 312

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA------ 121
             A  +  ++  + + ++VV ++ ++D LCK++ + +A  L   MI   + P        
Sbjct: 313 RAALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVIDAYGLYSEMIVKRIPPTVVTFKAF 372

Query: 122 --FCEI-------NIVAYGCLIDGLCKIGKLKNAR--------ELSQSLTRAGLMPNVVT 164
             F E+       N+  +  L+D LCK GK+K A+        E     T     PN V+
Sbjct: 373 SLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVS 432

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I   C   ++  A  L   M  +G  PN + + +L+ +  + +   K I L+ +  
Sbjct: 433 YNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFK 492

Query: 225 KRNVMPYASILSIIVDLLVK 244
            + + P     + +VD L K
Sbjct: 493 DQGIQPDMHTYNTLVDGLCK 512



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 36/242 (14%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           NR   +   P+ V +N I+  L K +        L  QM+ + + P++ T + LI+  CY
Sbjct: 194 NRMLQMRHTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILIN--CY 251

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
                     + +M   G + + +T   ++  LC N K++EA    D ++  G       
Sbjct: 252 ----------YFKM---GYEPNTITLTTLIKGLCLNGKVNEALLFHDHVLALGF------ 292

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            +N V YG LI+GLCK+G+ + A ++ + +    +  NVV Y+  I  LC D+ +  A+ 
Sbjct: 293 HLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVIDAYG 352

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           L+ +M VK + P  V F              K   L   M  +N+ P     +I+VD L 
Sbjct: 353 LYSEMIVKRIPPTVVTF--------------KAFSLFHEMVLKNINPNVYTFNILVDALC 398

Query: 244 KN 245
           K+
Sbjct: 399 KD 400


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 129/263 (49%), Gaps = 29/263 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N VTY+T+I  LCK   V++A ++F  MK ++I+P + TY SLI G C  +   EA 
Sbjct: 111 CQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEAS 170

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            L  EM    +  +VVTFNV++D  CK  K+  A  +L  M + GV PD           
Sbjct: 171 ALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGY 230

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C+ ++ +Y  LI+G CK  ++  A++L   +   G  PN 
Sbjct: 231 SMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNN 290

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V+YN  IH LC   ++ +A DLF +M   G  PN   +  L+  F ++    K   L R+
Sbjct: 291 VSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRA 350

Query: 223 MDKRNVMPYASILSIIVDLLVKN 245
           M    + P   + +I+V+ + K+
Sbjct: 351 MQSTYLKPNLVMYNILVNAMCKS 373



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 132/242 (54%), Gaps = 6/242 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+N ++D  CKEG V  A+ +   M +  + P+VVTYNSL++G+    +  EA  L
Sbjct: 183 PNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKL 242

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G + DV +++++++  CK +++DEA +L + MI  G  P      N V+Y  L
Sbjct: 243 FDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTP------NNVSYNTL 296

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC++G+L+ A++L +++   G +PN+ TY I +   C    + KA  LF  M+   +
Sbjct: 297 IHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYL 356

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN V++  L+ +  +        EL   +    + P   I + I++ L K  +   ++ 
Sbjct: 357 KPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALE 416

Query: 254 QF 255
            F
Sbjct: 417 AF 418



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  +Y+ +I+G CK   +D+AK+LF +M  +   PN V+YN+LIHG C      EA+
Sbjct: 251 CKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQ 310

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M   G   ++ T+ +++D  CK   + +A RL   M    ++P      N+V Y 
Sbjct: 311 DLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKP------NLVMYN 364

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++ +CK G LK+AREL   L   GL PNV  Y   I+ LC +  +D+A + F +ME  
Sbjct: 365 ILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDD 424

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           G  P+   +  ++  F++  + S+ + L+  M  R  +  A 
Sbjct: 425 GCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAG 466



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+ T+I+GL K G   +A ELF  M      P+  TY ++I+G C   +   A  
Sbjct: 42  QPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAG 101

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M + G Q +VVT++ ++  LCK R+++EA  +   M    + P  F       Y  
Sbjct: 102 LFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIF------TYTS 155

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC   + K A  L   +T   +MPNVVT+N+ +   C + ++  A  +   M   G
Sbjct: 156 LIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMG 215

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V P+ V + +LM  +    E  +  +L   M  +   P     SI+++
Sbjct: 216 VEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILIN 263



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 6/203 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M+   ++PN  T N LI+ FC     +    +  + +  GLQ  +VTF  +++ L K  K
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
             +A  L D M+  G +PD +       Y  +I+GLCKIG+   A  L + +  AG   N
Sbjct: 61  FAQAVELFDDMVARGCQPDDY------TYTTIINGLCKIGETALAAGLFKKMEEAGCQLN 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY+  IH+LC   ++++A D+F  M+ K ++P    +T+L+      +   +   LL 
Sbjct: 115 VVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLN 174

Query: 222 SMDKRNVMPYASILSIIVDLLVK 244
            M   N+MP     +++VD   K
Sbjct: 175 EMTSLNIMPNVVTFNVLVDTFCK 197



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 48/81 (59%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  +PN   Y TII+GLCKEG +D+A E F  M+D+   P+  +YN +I GF    D 
Sbjct: 387 FVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDE 446

Query: 68  NEAEYLFIEMMDRGLQSDVVT 88
           + A +L  EM DRG  +D  T
Sbjct: 447 SRAVHLIGEMRDRGFITDAGT 467


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 132/228 (57%), Gaps = 7/228 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YNT+I GL ++G +  A +L  +M +    PN+ TYN +I+G C     ++A +
Sbjct: 362 RPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASH 421

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  + + +G   D+ T+N ++D  CK  K+D AT +++ M   G+ PD      ++ Y  
Sbjct: 422 LVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPD------VITYNT 475

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLCK GK +   E+ +++   G  PN++TYNI + +LC  +++++A DL  +M+ KG
Sbjct: 476 LLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKG 535

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASILSIIV 239
           + P+ V F TL   F +  +     +L R M+K+ +V    +  +IIV
Sbjct: 536 LKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIV 583



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 130/238 (54%), Gaps = 8/238 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYNT+IDG CK+  +D A E+  +M  + + P+V+TYN+L++G C A    E  
Sbjct: 431 CPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVM 490

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M ++G   +++T+N+I+D LCK +K++EA  LL  M   G++PD      +V++G
Sbjct: 491 EIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPD------VVSFG 544

Query: 132 CLIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            L  G CKIG +  A +L + + +   +     TYNI + A      M+ A  LF  M+ 
Sbjct: 545 TLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKN 604

Query: 191 KGVAPNCVIFTTLMPSFIR-KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            G  P+   +  ++  F +  N T     LL +M+KR +    +   ++  L VK+++
Sbjct: 605 SGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKV 662



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 12/244 (4%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M NG  E      P+ +TYN+IIDG CK+G V  A  +      +   P+  TY SLI+G
Sbjct: 286 MVNGGFE------PDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLING 339

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC   D + A  +F + + +GL+  +V +N ++  L +   +  A +L++ M + G  P 
Sbjct: 340 FCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLP- 398

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                NI  Y  +I+GLCK+G + +A  L       G  P++ TYN  I   C   ++D 
Sbjct: 399 -----NIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDS 453

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A ++   M  +G+ P+ + + TL+    +  ++ +V+E+ ++M+++   P     +IIVD
Sbjct: 454 ATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVD 513

Query: 241 LLVK 244
            L K
Sbjct: 514 SLCK 517



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 15/242 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N V Y T++ GL   G  D A+ELF +M    + P+VV +N L+H  C      E+E
Sbjct: 177 CDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESE 236

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR---------LLDLMIQGGVRPDAF 122
            L  +++ RG+  ++ TFN+ +  LC+   +D A R          L  M+ GG  PD  
Sbjct: 237 RLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDD- 295

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                + Y  +IDG CK G +++A  + +     G  P+  TY   I+  C D   D+A 
Sbjct: 296 -----LTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAM 350

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            +F D   KG+ P+ V++ TL+    ++      ++L+  M +   +P     +++++ L
Sbjct: 351 AVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGL 410

Query: 243 VK 244
            K
Sbjct: 411 CK 412



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 13/191 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TYN I+D LCK   V++A +L  +MK + + P+VV++ +L  GFC   D + A 
Sbjct: 501 CTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAY 560

Query: 72  YLFIEMMDRGLQSDV----VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            LF  M     Q DV     T+N+I+    +   M+ A +L  +M   G  PD +     
Sbjct: 561 QLFRRMEK---QYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNY----- 612

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  +IDG CK+G +    +          +P++ T+   ++ LC  +++ +A  +   
Sbjct: 613 -TYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHL 671

Query: 188 MEVKGVAPNCV 198
           M  KG+ P  V
Sbjct: 672 MLQKGIVPETV 682



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 5/226 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR +     P+ +TYNT+++GLCK G  ++  E+F  M+++   PN++TYN ++   C A
Sbjct: 459 NRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKA 518

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              NEA  L  EM  +GL+ DVV+F  +    CK   +D A +L   M     +    C 
Sbjct: 519 KKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRM----EKQYDVCH 574

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                Y  ++    +   +  A +L   +  +G  P+  TY + I   C    + + +  
Sbjct: 575 -TTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKF 633

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            L+   K   P+   F  ++     K++  + + ++  M ++ ++P
Sbjct: 634 LLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVP 679



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           ++G V +A + F +M   N +P+V ++N++++        N+A  +++ M DRG+QSDV 
Sbjct: 88  RKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVY 147

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           T+ + +   CK  +   A RLL  M      P+  C+ N VAY  ++ GL   G+  +AR
Sbjct: 148 TYTIRIKSFCKTARPYAALRLLRNM------PELGCDSNAVAYCTVVAGLYDSGEHDHAR 201

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           EL   +    L P+VV +N  +H LC    + ++  L   +  +GV PN   F   +   
Sbjct: 202 ELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGL 261

Query: 208 IRKNETSKVI 217
            R+    + +
Sbjct: 262 CREGALDRAV 271



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 15/148 (10%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TY  +IDG CK G + +  +  L+  ++   P++ T+  +++  C  +  +EA 
Sbjct: 607 CDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAV 666

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL--DLMIQGGVRPDAFCEINIVA 129
            +   M+ +G+  + V  N I +    ++K+  A ++L  DL+ +G         I    
Sbjct: 667 GIIHLMLQKGIVPETV--NTIFEA---DKKVVAAPKILVEDLLKKG--------HIAYYT 713

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAG 157
           Y  L DG+     LK       SL R  
Sbjct: 714 YELLYDGIRDKKILKKRLPTVNSLHRGA 741


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 123/209 (58%), Gaps = 8/209 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VTYNT++DGLCK G + +A++L  +MK     P+VV Y+S ++G C +     A  
Sbjct: 184 KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQ 243

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M D     +VVT+N I+D LCK+ K+D A  +++ M          C +N+V Y  
Sbjct: 244 VLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS-----SDGCGLNVVGYST 298

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DGLCK+G+ + AR + +++ RAG  P+VVTY+  ++ LC   ++++A +   +M ++G
Sbjct: 299 VVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG 358

Query: 193 VAPNCVIFTTLMPSFI---RKNETSKVIE 218
             PN V + +L+       R  E  +++E
Sbjct: 359 CKPNAVTYCSLVHGLCSCGRLAEAERMVE 387



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 121/242 (50%), Gaps = 8/242 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+VT+N +++G  K+G     + L   M    I PNVV+YN L+ G C     +EAE
Sbjct: 6   CPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAE 65

Query: 72  YLFIEMMDRGLQS--DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            L  +M+ RG +S  D+VT++ ++   CK  K++E+  LL  +I  G+RPDA     ++A
Sbjct: 66  ELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMA 125

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
                  LCK  +L  A EL + + RAG  P ++T+N  I   C ++ ++ A  L   M 
Sbjct: 126 ------SLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMA 179

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             GV  + V + TLM    +     +  +LL  M      P     S  V  L K+   L
Sbjct: 180 ASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVL 239

Query: 250 NS 251
           N+
Sbjct: 240 NA 241



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 20/250 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y++ + GLCK G V  A ++  QM+D + +PNVVTYN+++ G C +   + A 
Sbjct: 218 CAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTA- 276

Query: 72  YLFIEMMDRGLQSD-----VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              +EMM++   SD     VV ++ ++D LCK  +  EA  +++ M + G RPD      
Sbjct: 277 ---LEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPD------ 327

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  L++GLCK GK++ A E  + +   G  PN VTY   +H LC+  ++ +A  +  
Sbjct: 328 VVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVE 387

Query: 187 DMEVKG-----VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           +M   G       P+   +  L+    +       ++  + M  +   P     S IV+ 
Sbjct: 388 EMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEG 447

Query: 242 LVKNEISLNS 251
           L ++  +L +
Sbjct: 448 LARSGRALQA 457



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 42/267 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN----------------------- 50
           P+ VTY+T++ G CK G V++++EL  ++    + P+                       
Sbjct: 80  PDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALEL 139

Query: 51  ------------VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                       ++T+N+LI G C   +   A+ L   M   G+++DVVT+N +MD LCK
Sbjct: 140 LEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCK 199

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             ++ EA +LL+ M   G  PD      +VAY   + GLCK GK+ NA ++ + +  +  
Sbjct: 200 AGRLQEAEQLLERMKASGCAPD------VVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDH 253

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVI 217
            PNVVTYN  +  LC   ++D A ++   M    G   N V ++T++    +   T +  
Sbjct: 254 DPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEAR 313

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++ +M +    P     S +V+ L K
Sbjct: 314 SVMEAMARAGCRPDVVTYSSLVNGLCK 340



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 77/135 (57%), Gaps = 9/135 (6%)

Query: 78  MDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           MDR G   + VTFN +++   K  +  +  RLL+ M   G++P      N+V+Y  L++G
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQP------NVVSYNGLLEG 54

Query: 137 LCKIGKLKNARELSQSL-TRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           LCK+ +   A EL + + +R G   P++VTY+  +   C   +++++ +L  ++  +G+ 
Sbjct: 55  LCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLR 114

Query: 195 PNCVIFTTLMPSFIR 209
           P+ +++T +M S  +
Sbjct: 115 PDALMYTKVMASLCK 129



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           + R G  PN VT+N  ++      +      L   M  +G+ PN V +  L+    +   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 213 TSKVIELLRSMDKR------NVMPYASILS 236
             +  EL+R M  R      +++ Y+++LS
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLS 90


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 133/241 (55%), Gaps = 6/241 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  G + +P+ V YNTIIDG+CK+  V+ A +L+ +   + I P+V TYN+LI GFC   
Sbjct: 323 RNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVG 382

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  LF +M  + +  DV TF++++D  CK+  + EA  +L +M++  ++PD     
Sbjct: 383 KLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPD----- 437

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y  L+DG C + ++  A  +  +++  G+  NV +YNI I+  C  + +D+A  LF
Sbjct: 438 -VVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLF 496

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M  K + P+ + +++L+    +    S  +EL+  M  R   P     + I+D L K 
Sbjct: 497 KEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKK 556

Query: 246 E 246
            
Sbjct: 557 H 557



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 6/215 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN +I+G CK   VD+A +LF +M  + I P+V+TY+SLI G C +   + A  L 
Sbjct: 472 NVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELV 531

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  RG Q D++T+N I+D LCK   +D+A  LL  +   G+RPD      +  Y  L+
Sbjct: 532 DEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPD------MNTYTILV 585

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLC+ GKL++AR++ + L   G   +V  Y + I   C+    D+A  L   ME  G  
Sbjct: 586 KGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCI 645

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           P+   +  ++ S   K+E     +LLR M  R ++
Sbjct: 646 PDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLL 680



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+T  T I G C +G + +A     ++     + + V+Y +LI+G C   +   A  
Sbjct: 260 EPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALE 319

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L      + +Q DVV +N I+D +CK++ +++A  L    +   + PD F       Y  
Sbjct: 320 LLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVF------TYNA 373

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C +GKLK+A +L   +T   ++P+V T++I +   C D  + +A ++   M  + 
Sbjct: 374 LISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQS 433

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V +++LM  +   NE +K   +  +M  R V       +I+++   K
Sbjct: 434 IKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCK 485



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 101/181 (55%), Gaps = 8/181 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY+++IDGLCK G +  A EL  +M      P+++TYNS++   C  +  ++A  L
Sbjct: 506 PDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITL 565

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             ++  +G++ D+ T+ +++  LC++ K+++A ++  DL+++G         +++ AY  
Sbjct: 566 LTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGY-------NLDVYAYTV 618

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C  G    A  L   +   G +P+  TY I I +L   ++ D A  L  +M ++G
Sbjct: 619 MIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRG 678

Query: 193 V 193
           +
Sbjct: 679 L 679



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 6/175 (3%)

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           EY   +++  G + D +T    +   C   ++ +A    D +I  G   D       V+Y
Sbjct: 248 EYTPPKILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQ------VSY 301

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           G LI+GLCK+G+ K A EL +      + P+VV YN  I  +C D+ ++ A DL+ +   
Sbjct: 302 GTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVS 361

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           K + P+   +  L+  F    +    I+L   M  +N++P     SI+VD   K+
Sbjct: 362 KRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKD 416



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 62/109 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYN+I+D LCK+  VDKA  L  ++K + I P++ TY  L+ G C +    +A  
Sbjct: 540 QPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARK 599

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           +F +++ +G   DV  + V++   C     DEA  LL  M + G  PDA
Sbjct: 600 VFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDA 648



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 56/105 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY  ++ GLC+ G ++ A+++F  +  +  N +V  Y  +I GFC     +EA  
Sbjct: 575 RPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALA 634

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           L  +M + G   D  T+ +I+  L +  + D A +LL  MI  G+
Sbjct: 635 LLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGL 679


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y+ IIDGLCK G +D A  LF +M+ + I  N++TYN LI GFC A   ++   
Sbjct: 358 KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAK 417

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  +VVTF+V++D   K  K+ EA  L   MI  G+ PD       + Y  
Sbjct: 418 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT------ITYTS 471

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK   L  A ++   +   G  PN+ T+NI I+  C   ++D   +LF  M ++G
Sbjct: 472 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 531

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           V  + V + TL+  F    + +   EL + M  R V P      I++D L  N  S  ++
Sbjct: 532 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 591

Query: 253 PQFNR 257
             F +
Sbjct: 592 EIFEK 596



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 128/232 (55%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNT+T++T+I+GLC EG V +A EL  +M +    P+++T N+L++G C +    EA  
Sbjct: 253 EPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAML 312

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++ G Q + VT+  +++ +CK+ +   A  LL  M +  ++ DA      V Y  
Sbjct: 313 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDA------VKYSI 366

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK G L NA  L   +   G+  N++TYNI I   CN  + D    L  DM  + 
Sbjct: 367 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 426

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN V F+ L+ SF+++ +  +  EL + M  R + P     + ++D   K
Sbjct: 427 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 478



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 124/289 (42%), Gaps = 64/289 (22%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N +TYN +I G C  G  D   +L   M    INPNVVT++ LI  F       EAE L 
Sbjct: 395 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 454

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCEI 125
            EM+ RG+  D +T+  ++D  CK   +D+A +++DLM+  G  P+          +C+ 
Sbjct: 455 KEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKA 514

Query: 126 N--------------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT- 164
           N                     V Y  LI G C++GKL  A+EL Q +    + PN+VT 
Sbjct: 515 NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 574

Query: 165 ----------------------------------YNITIHALCNDEQMDKAHDLFLDMEV 190
                                             YNI IH +CN  ++D A DLF  + +
Sbjct: 575 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 634

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           KGV P    +  ++    +K   S+   L R M++    P     +I++
Sbjct: 635 KGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 683



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+N +I+G CK   +D   ELF +M    +  + VTYN+LI GFC     N A+
Sbjct: 497 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 556

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ R +  ++VT+ +++D LC N + ++A  + + + +  +      E++I  Y 
Sbjct: 557 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM------ELDIGIYN 610

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C   K+ +A +L  SL   G+ P V TYNI I  LC    + +A  LF  ME  
Sbjct: 611 IIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED 670

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G AP+   +  L+ + +   + +K ++L+  + +      AS + +++D+L
Sbjct: 671 GHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML 721



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + ++ +   + K    D    L  QM+ + I  N+ T + +I+ FC       A   
Sbjct: 184 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 243

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
             +++  G + + +TF+ +++ LC   ++ EA  L+D M++ G +PD             
Sbjct: 244 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 303

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             C+ N V YG +++ +CK G+   A EL + +    +  + V 
Sbjct: 304 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 363

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+I I  LC    +D A +LF +ME+KG+  N + +  L+  F          +LLR M 
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 423

Query: 225 KRNVMPYASILSIIVDLLVK 244
           KR + P     S+++D  VK
Sbjct: 424 KRKINPNVVTFSVLIDSFVK 443



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 6/225 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
            D A +LF  M      P V+ ++ L          +    L  +M  +G+  ++ T ++
Sbjct: 167 ADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSI 226

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C+ RK+  A   +  +I+ G  P      N + +  LI+GLC  G++  A EL  
Sbjct: 227 MINCFCRCRKLCLAFSAMGKIIKLGYEP------NTITFSTLINGLCLEGRVSEALELVD 280

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  P+++T N  ++ LC   +  +A  L   M   G  PN V +  ++    +  
Sbjct: 281 RMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 340

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           +T+  +ELLR M++RN+   A   SII+D L K+    N+   FN
Sbjct: 341 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFN 385



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 7/152 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TYN +I GLCK+G + +A+ LF +M+++   P+  TYN LI       D  ++  
Sbjct: 638 KPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVK 697

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR-----KMDEATRLLDLMIQGGVRPDAFCEINI 127
           L  E+   G   D  T  +++D L  ++     K    ++      Q     D++    +
Sbjct: 698 LIEELKRCGFSVDASTIKMVIDMLSDDKANYFSKYHNCSKSTSFWNQPEKPSDSWNWKCL 757

Query: 128 VAYGCLIDGL--CKIGKLKNARELSQSLTRAG 157
           +   CL +    CKIG  K A     + T  G
Sbjct: 758 LRLRCLAENFVRCKIGDGKTASFWFDNWTPFG 789


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y+ IIDGLCK G +D A  LF +M+ + I  N++TYN LI GFC A   ++   
Sbjct: 260 KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAK 319

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  +VVTF+V++D   K  K+ EA  L   MI  G+ PD       + Y  
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT------ITYTS 373

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK   L  A ++   +   G  PN+ T+NI I+  C   ++D   +LF  M ++G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           V  + V + TL+  F    + +   EL + M  R V P      I++D L  N  S  ++
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 493

Query: 253 PQFNR 257
             F +
Sbjct: 494 EIFEK 498



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 128/232 (55%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNT+T++T+I+GLC EG V +A EL  +M +    P+++T N+L++G C +    EA  
Sbjct: 155 EPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAML 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++ G Q + VT+  +++ +CK+ +   A  LL  M +  ++ DA      V Y  
Sbjct: 215 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDA------VKYSI 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK G L NA  L   +   G+  N++TYNI I   CN  + D    L  DM  + 
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN V F+ L+ SF+++ +  +  EL + M  R + P     + ++D   K
Sbjct: 329 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 380



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 124/289 (42%), Gaps = 64/289 (22%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N +TYN +I G C  G  D   +L   M    INPNVVT++ LI  F       EAE L 
Sbjct: 297 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 356

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCEI 125
            EM+ RG+  D +T+  ++D  CK   +D+A +++DLM+  G  P+          +C+ 
Sbjct: 357 KEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKA 416

Query: 126 N--------------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT- 164
           N                     V Y  LI G C++GKL  A+EL Q +    + PN+VT 
Sbjct: 417 NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476

Query: 165 ----------------------------------YNITIHALCNDEQMDKAHDLFLDMEV 190
                                             YNI IH +CN  ++D A DLF  + +
Sbjct: 477 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 536

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           KGV P    +  ++    +K   S+   L R M++    P     +I++
Sbjct: 537 KGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 585



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+N +I+G CK   +D   ELF +M    +  + VTYN+LI GFC     N A+
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ R +  ++VT+ +++D LC N + ++A  + + + +  +      E++I  Y 
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM------ELDIGIYN 512

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C   K+ +A +L  SL   G+ P V TYNI I  LC    + +A  LF  ME  
Sbjct: 513 IIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED 572

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G AP+   +  L+ + +   + +K ++L+  + +      AS + +++D+L
Sbjct: 573 GHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDML 623



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + ++ +   + K    D    L  QM+ + I  N+ T + +I+ FC       A   
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
             +++  G + + +TF+ +++ LC   ++ EA  L+D M++ G +PD             
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             C+ N V YG +++ +CK G+   A EL + +    +  + V 
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+I I  LC    +D A +LF +ME+KG+  N + +  L+  F          +LLR M 
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325

Query: 225 KRNVMPYASILSIIVDLLVK 244
           KR + P     S+++D  VK
Sbjct: 326 KRKINPNVVTFSVLIDSFVK 345



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 6/225 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
            D A +LF  M      P V+ ++ L          +    L  +M  +G+  ++ T ++
Sbjct: 69  ADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSI 128

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C+ RK+  A   +  +I+ G  P      N + +  LI+GLC  G++  A EL  
Sbjct: 129 MINCFCRCRKLCLAFSAMGKIIKLGYEP------NTITFSTLINGLCLEGRVSEALELVD 182

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  P+++T N  ++ LC   +  +A  L   M   G  PN V +  ++    +  
Sbjct: 183 RMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 242

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           +T+  +ELLR M++RN+   A   SII+D L K+    N+   FN
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFN 287



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TYN +I GLCK+G + +A+ LF +M+++   P+  TYN LI       D  ++  
Sbjct: 540 KPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVK 599

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  E+   G   D  T  +++D L   R
Sbjct: 600 LIEELKRCGFSVDASTIKMVIDMLSDGR 627


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 131/240 (54%), Gaps = 10/240 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYA 64
           E GV  +P+T++YNT++  LC++    +A +L   M  K    +PNVVTYN++IHG    
Sbjct: 183 ELGV--EPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFRE 240

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            + ++A  LF EMM +G+  DVVT+  I+D LCK R MD+A  +L  MI  G +P     
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQP----- 295

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N V Y C+I G    G+ K    + + +T  GLMPN+VT N  + +LC   +  +A + 
Sbjct: 296 -NKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEF 354

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M  KG  PN V ++ L+  +  +     ++ L  SM+   ++    + +I++D   K
Sbjct: 355 FDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGK 414



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 6/246 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I GL +EG V KA  LF +M  + + P+VVTY S+I   C A   ++AE
Sbjct: 223 CSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAE 282

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M+  G Q + VT+N ++     + +  E   +   M   G+ P      NIV   
Sbjct: 283 LVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMP------NIVTCN 336

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             +  LCK GK K A E   S+   G  PN+VTY++ +H    +       +LF  ME  
Sbjct: 337 SYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGN 396

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+  +  +F  ++ ++ ++    + + +   M ++ V+P A    I++    +     ++
Sbjct: 397 GIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADA 456

Query: 252 IPQFNR 257
           + +FN+
Sbjct: 457 MDKFNQ 462



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 9/253 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E GV+  P+  TY  +I    + G +  A + F QM    + P  + Y+SLI GFC   
Sbjct: 429 QEQGVI--PDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHG 486

Query: 66  DGNEAEYLFIEMMDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +  +A+ L  EMM RG+ + ++V FN I++ LCK  ++ EA  + D +I  G RPD    
Sbjct: 487 NLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPD---- 542

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ +  LIDG   +GK++ A  +  ++  AG+ P+VV+YN  I   C + ++D    L
Sbjct: 543 --VITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLIL 600

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +M  KGV P  + +  ++        T    ++   M +       S   II+  L +
Sbjct: 601 FGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCR 660

Query: 245 NEISLNSIPQFNR 257
           N     +I  F +
Sbjct: 661 NNCDDEAIAMFKK 673



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 14/221 (6%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+ VTY +IID LCK   +DKA+ +  QM      PN VTYN +IHG+  +    
Sbjct: 257 GVV--PDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWK 314

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           E   +F EM  +GL  ++VT N  M  LCK+ K  EA    D M   G +P      N+V
Sbjct: 315 ETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKP------NLV 368

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G    G   +   L  S+   G++ +   +NI I A      MD+   +F  M
Sbjct: 369 TYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQM 428

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           + +GV P+   +  ++ +F      S++  L  +MDK N M
Sbjct: 429 QEQGVIPDACTYGIVIAAF------SRMGRLADAMDKFNQM 463



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 10/234 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE--A 70
           +P+ V+YNT+IDG C+ G +D    LF +M  + + P  +TY  ++HG    NDG    A
Sbjct: 575 EPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGL--FNDGRTVGA 632

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + +  EM++ G   D+ T  +I+  LC+N   DEA  +   +    V+       NI   
Sbjct: 633 KKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVK------FNIAII 686

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +ID + K+ K + A+EL  S++  GL+PN  TY + I  L  +  +++A ++F  ME 
Sbjct: 687 NTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEK 746

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G AP+  +   ++   + K E  K    +  +D + +   AS +S+++ L  +
Sbjct: 747 SGCAPSSRLLNYIIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLMALFSR 800



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 7/241 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCY 63
           N+   +  KP  + Y+++I G C  G + KAKEL  +M    I  PN+V +NS+I+  C 
Sbjct: 461 NQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCK 520

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
                EA  +F  ++  G + DV+TFN ++D      K+++A  +LD MI  G+ PD   
Sbjct: 521 EGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPD--- 577

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
              +V+Y  LIDG C+ G++ +   L   +   G+ P  +TY I +H L ND +   A  
Sbjct: 578 ---VVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKK 634

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +  +M   G   +      ++    R N   + I + + +   NV    +I++ ++D + 
Sbjct: 635 MCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMY 694

Query: 244 K 244
           K
Sbjct: 695 K 695



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 9/185 (4%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR- 107
           P V TYN L+   C          LF   +  GL+ DV+  ++++  L   ++ D+    
Sbjct: 117 PTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNL 176

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR--AGLMPNVVTY 165
           LL  M + GV PD       ++Y  ++  LC+  + + A +L  ++ +   G  PNVVTY
Sbjct: 177 LLHRMPELGVEPDT------ISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTY 230

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  IH L  + ++ KA +LF +M  +GV P+ V +T+++ +  +     K   +LR M  
Sbjct: 231 NTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMIS 290

Query: 226 RNVMP 230
               P
Sbjct: 291 NGFQP 295



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           V T+N++MD  C+ R+      L    ++ G++ D      ++    L+  L    +  +
Sbjct: 119 VCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMD------VIVASILLKCLYHAKRSDD 172

Query: 146 ARELS-QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK--GVAPNCVIFTT 202
              L    +   G+ P+ ++YN  +  LC D +  +A DL   M  K  G +PN V + T
Sbjct: 173 VVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNT 232

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++    R+ E SK   L   M ++ V+P     + I+D L K
Sbjct: 233 VIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCK 274


>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
 gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   YN +I+G CK   +DKAK+L+ +M  + + P+ VTYN+LIHG C      EA+ 
Sbjct: 26  KPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQD 85

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M   G   D+  +++++D LCK   + +A RL   M    ++PD      +V Y  
Sbjct: 86  LFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPD------LVMYNI 139

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D +CK G LK+AREL   L   GL PNV  Y   I+ LC +  +D+A + F +ME  G
Sbjct: 140 LVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDG 199

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P+   +  ++  F++  + S+ + L+  M  R  +
Sbjct: 200 CPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFI 236



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 116/205 (56%), Gaps = 8/205 (3%)

Query: 26  LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD 85
           LC E  V +A++LF  M  +   P+V  YN LI+G+C A   ++A+ L+ EM+ +GL  D
Sbjct: 6   LCME--VVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPD 63

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
            VT+N ++  LC+  ++ EA  L   M + G  PD F      AY  L+DGLCK G L  
Sbjct: 64  KVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLF------AYSILLDGLCKQGYLGK 117

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           A  L +++  + L P++V YNI + A+C    +  A +LF ++ VKG+ PN  I+TT++ 
Sbjct: 118 AFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIIN 177

Query: 206 SFIRKNETSKVIELLRSMDKRNVMP 230
              ++    + +E  R+M++    P
Sbjct: 178 GLCKEGLLDEALEAFRNMEEDGCPP 202



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 104/198 (52%), Gaps = 6/198 (3%)

Query: 58  IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           ++G+    +  EA  LF  M+ +G + DV  +N++++  CK  ++D+A +L + MI  G+
Sbjct: 1   MYGYSLCMEVVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGL 60

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
            PD       V Y  LI GLC++G+L+ A++L +++ + G +P++  Y+I +  LC    
Sbjct: 61  TPDK------VTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGY 114

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           + KA  LF  M+   + P+ V++  L+ +  +        EL   +  + + P   I + 
Sbjct: 115 LGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTT 174

Query: 238 IVDLLVKNEISLNSIPQF 255
           I++ L K  +   ++  F
Sbjct: 175 IINGLCKEGLLDEALEAF 192



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 47/76 (61%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y TII+GLCKEG +D+A E F  M+++   P+  +YN +I GF    D + A +
Sbjct: 166 QPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVH 225

Query: 73  LFIEMMDRGLQSDVVT 88
           L  EM DRG  +DV T
Sbjct: 226 LIGEMRDRGFIADVGT 241



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN ++D +CK G +  A+ELF ++  + + PNV  Y ++I+G C     +EA  
Sbjct: 131 KPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALE 190

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            F  M + G   D  ++NVI+    +++    A  L+  M   G   D
Sbjct: 191 AFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFIAD 238


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYN +I+G  K   ++KA EL +++K EN+  N     ++++G C+  D   A  
Sbjct: 404 KPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANE 463

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+  GL+ ++V +  I+  L K  + +EA ++L +M   G+ PD FC      Y  
Sbjct: 464 LFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFC------YNT 517

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G CK GK++  +     +   GL PNV TY   IH  C   +M  A   F++M   G
Sbjct: 518 VIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSG 577

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +APN VI T L+  + +   T+K     R M  + V+P     S+++  L KN
Sbjct: 578 IAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKN 630



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY   I G C+ G +  A+  F++M D  I PN V    LI G+C   +  +A  
Sbjct: 544 KPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFA 603

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F  M+D+G+  DV T +V++  L KN K+ EA  +   ++  G+ PD F       Y  
Sbjct: 604 KFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVF------TYTS 657

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LCK G LK A EL   + + G+ PN+VTYN  I+ LC   ++ KA +LF  +  KG
Sbjct: 658 LISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKG 717

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +A N V ++T++  + +    ++  +L   M    V P + +   ++D
Sbjct: 718 LARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALID 765



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 128/259 (49%), Gaps = 28/259 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY ++I  LCKEG +  A EL   M  + INPN+VTYN+LI+G C   +  +A  L
Sbjct: 650 PDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKAREL 709

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV----- 128
           F  + ++GL  + VT++ I+   CK+  + EA +L   M   GV PD+F    ++     
Sbjct: 710 FDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCK 769

Query: 129 -----------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                                  A+  LIDG  K+GKL  A +L + +    + PN VTY
Sbjct: 770 AGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTY 829

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            I I   C    + +A  LF++M+ + V PN + +T+L+  + R    S++  L   M  
Sbjct: 830 TILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVA 889

Query: 226 RNVMPYASILSIIVDLLVK 244
           R + P     S++VD  +K
Sbjct: 890 RGIKPDDLAWSVMVDAHLK 908



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y TI+ GL KEG  ++A ++   MKD+ ++P+V  YN++I GFC A    E + 
Sbjct: 474 KPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKS 533

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-DAFCEINIVAYG 131
             +EM+ +GL+ +V T+   +   C+  +M  A R    M+  G+ P D  C        
Sbjct: 534 YLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTD------ 587

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK G    A    + +   G++P+V T+++ IH L  + ++ +A  +F ++  K
Sbjct: 588 -LIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDK 646

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P+   +T+L+ +  ++ +     EL   M K+ + P     + +++ L K
Sbjct: 647 GLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCK 699



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 6/229 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I+  C+ G V++ K +   M+++   PN+VTY+ +I G C A D +EA  L
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALEL 289

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M ++GL  D   +  ++D  C+ ++  E   +LD M   G++PD       VAY  L
Sbjct: 290 KRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDH------VAYTAL 343

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G  K   +  A ++ + +    +  N  TY   IH LC    ++KA DLF +M + G+
Sbjct: 344 INGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGI 403

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            P+   +  L+  + +     K  ELL  + K N+   A +   IV+ L
Sbjct: 404 KPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGL 452



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY+ +I GLC+ G VD+A EL   M ++ + P+   Y +LI GFC      E +
Sbjct: 263 CIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGK 322

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM   GL+ D V +  +++   K   +  A ++ + M    ++      +N   Y 
Sbjct: 323 SMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIK------LNTFTYY 376

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCKIG L+ A +L   +T  G+ P++ TYN  I      + M+KA++L ++++ +
Sbjct: 377 ALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKE 436

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +  N  +   ++       + ++  EL + M    + P   I + IV  LVK
Sbjct: 437 NLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVK 489



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N+VTY+TII G CK   + +A +LF  MK   + P+   Y +LI G C A +  +A  LF
Sbjct: 721 NSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLF 780

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           + M++ G+ S    FN ++D   K  K+ EA +L++ M+   + P      N V Y  LI
Sbjct: 781 LGMVEEGIAS-TPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITP------NHVTYTILI 833

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +  C +G +K A +L   + +  +MPNV+TY   +H      +  +   LF +M  +G+ 
Sbjct: 834 EYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIK 893

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+ + ++ ++ + +++    K ++L+  M    V    ++ +I++D L K+
Sbjct: 894 PDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKH 944



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G  E G+   P    +N +IDG  K G + +A +L   M D +I PN VTY  LI   C 
Sbjct: 782 GMVEEGIASTP---AFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCT 838

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
             +  EAE LF+EM  R +  +V+T+  ++    +  +  E   L D M+  G++PD   
Sbjct: 839 VGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDD-- 896

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
               +A+  ++D   K G    A +L   +   G+      Y I I ALC    + +   
Sbjct: 897 ----LAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLK 952

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +  ++E +G   +     TL+  F R   T + + +L SM
Sbjct: 953 VLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESM 992



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 30/257 (11%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF-------- 61
            V   N  T++ +   LC  G    A  +  +M D   NP+V   +S+I  +        
Sbjct: 101 TVFSQNLSTFSILSLILCNSGLFGNAANVLERMIDTR-NPHVKILDSIIKCYKEINGSSS 159

Query: 62  ------------CYANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
                        Y   G  NEA  +F+          +   N +  +L K  +++   +
Sbjct: 160 SSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWK 219

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           +   M+ G + PD +       Y  LI+  C++GK++  + +   +   G +PN+VTY++
Sbjct: 220 VYKGML-GAIVPDVY------TYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSV 272

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I  LC    +D+A +L   M  KG+ P+  I+ TL+  F R+  +++   +L  M    
Sbjct: 273 VIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMG 332

Query: 228 VMPYASILSIIVDLLVK 244
           + P     + +++  VK
Sbjct: 333 LKPDHVAYTALINGFVK 349



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 70/171 (40%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +I+  C  G + +A++LF++M+  N+ PNV+TY SL+HG+      +E   L
Sbjct: 824 PNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSL 883

Query: 74  FIEMMDRGLQSDVVTFN-----------------------------------VIMDELCK 98
           F EM+ RG++ D + ++                                   +++D LCK
Sbjct: 884 FDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCK 943

Query: 99  NR-----------------------------------KMDEATRLLDLMIQ 114
           +                                    + DEA R+L+ M++
Sbjct: 944 HNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVR 994


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T+TYN +IDG CK G ++K KELF +M  E + PNVVT N+L+ G C     + A 
Sbjct: 415 CAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAV 474

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F+E   RG++ D VT+  +++  C     ++A  L + M++ G  PDA      + Y 
Sbjct: 475 NFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDA------IVYY 528

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G  + G++ +A  +   L + G+ P+ V YN  I   C   +  +  ++  +ME  
Sbjct: 529 TLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEA 588

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P+ + + TL+    +  +     +++R M K  V+P  +    +++
Sbjct: 589 GLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVIN 637



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ + Y T+I G  + G +  A  +  ++K   I P+ V YN+LI GFC  N  +   
Sbjct: 520 CSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVF 579

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM + GL+ D +T+N ++    KN  +  A +++  MI+ GV P       +  YG
Sbjct: 580 EMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVP------TVATYG 633

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            +I+  C  G    A E+ + +  A  + PN V YNI I++LC + ++  A  L  DM++
Sbjct: 634 AVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKI 693

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            GV PN   +  +      + +  KV E +  M +    P    + I+ + L
Sbjct: 694 WGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWL 745



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 15/230 (6%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N+++ GL +EG  ++  EL  +M + +I PNVVT+  LI+  C     ++A  + +E M 
Sbjct: 309 NSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEV-LEKMS 367

Query: 80  RGLQS---------DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            G +S         DVV +N ++D LCK  +  E   L++ M     R    C  + + Y
Sbjct: 368 GGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERM-----RSQKGCAPDTITY 422

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            CLIDG CK G+++  +EL   + + G+ PNVVT N  +  +C   ++  A + F++ + 
Sbjct: 423 NCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQR 482

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +G+  + V +T L+ +F   N   K +EL   M K    P A +   ++ 
Sbjct: 483 RGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLIS 532



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 15/227 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE--------NINPNVVTYNSLIHGFCYA 64
           +PN VT+  +I+ +CK   VD A E+  +M           ++ P+VV YN+LI G C  
Sbjct: 337 QPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKV 396

Query: 65  NDGNEAEYLFIEMMD-RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
               E   L   M   +G   D +T+N ++D  CK  ++++   L D M + GV P    
Sbjct: 397 GRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAP---- 452

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N+V    L+ G+C+ G++ +A        R G+  + VTY   I+A CN    +KA +
Sbjct: 453 --NVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAME 510

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           LF +M   G +P+ +++ TL+  F +    +    +L  + K  + P
Sbjct: 511 LFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRP 557



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 31/231 (13%)

Query: 15  NTVTYNTIIDGLCKEGFVDKA----KELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           NT   N  +  L + G V  A     E+F    D N  PN  T   ++  F    + NE 
Sbjct: 189 NTYLRNVWLSILLRSGRVKDALKVIDEMFESNDDSNCRPNDAT-GDILFSFLLKRERNEE 247

Query: 71  EY-------LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAF 122
                    L ++  + G+         ++  LC+NRK +    L   MI+ G V   A 
Sbjct: 248 LLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAA 307

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           C         L+ GL + G      EL + +    + PNVVT+ I I+ +C   ++D A 
Sbjct: 308 C-------NSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDAL 360

Query: 183 DLFLDM----EVKGVA----PNCVIFTTLMPSFI---RKNETSKVIELLRS 222
           ++   M    E  G++    P+ VI+ TL+       R+ E   ++E +RS
Sbjct: 361 EVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRS 411


>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 458

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 132/234 (56%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y T+ID +CK+ FV+ A +L+ +M    I+PNVVTY +LI GFC      EA  
Sbjct: 169 EPDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALG 228

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M+   +  +V TFN ++D  CK  K++EA  +L+ M++  ++ D      +VAY  
Sbjct: 229 LFKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSD------VVAYSS 282

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G C + ++  A+ + +++    L  +V +YNI I+  C  + +D+A  LF +M +K 
Sbjct: 283 LMNGYCLVNEVFKAQSIFKTMAERELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQ 342

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + P+ V + TL+    +    S  +EL+  MD R   P       IVD+L KN 
Sbjct: 343 IFPDVVTYHTLIDGLCKSGRLSYAMELVDEMDDRGEPPNIITYCPIVDVLCKNH 396



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 113/223 (50%), Gaps = 14/223 (6%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYAN 65
           ++ ++  P T    T I G+C+ G + +A     ++      + +  +Y +LI+G C   
Sbjct: 99  QYYIIAPPLT----TPIKGICQTGDIQRALNFHYKVVVARGFDVDHYSYGTLINGLCKVG 154

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A    ++++ +  + DVV +  ++D +CK+  +++A  L   M+  G+ P      
Sbjct: 155 GDTRAA---LQLLRQAFEPDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISP------ 205

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+V Y  LIDG C +GKL+ A  L + +    + PNV T+N  + A C + ++++A ++ 
Sbjct: 206 NVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVL 265

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             M  K +  + V +++LM  +   NE  K   + ++M +R +
Sbjct: 266 NTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAEREL 308



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           P+ VTY+T+IDGLCK G +  A EL  +M D    PN++TY  ++   C  +DG
Sbjct: 345 PDVVTYHTLIDGLCKSGRLSYAMELVDEMDDRGEPPNIITYCPIVDVLCKNHDG 398


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN +ID  C  G    A +L   M ++ INP++VT+++LI+ F      +EAE +
Sbjct: 88  PNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEI 147

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+   +    +T+N ++D  CK  ++D+A R+LD M   G  PD      +V +  L
Sbjct: 148 YKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPD------VVTFSTL 201

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK  ++ N  E+   + R G++ N VTY   IH  C    +D A DL  +M   GV
Sbjct: 202 INGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGV 261

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           AP+ + F  ++     K E  K   +L  + K  V P
Sbjct: 262 APDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVCP 298



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 127/236 (53%), Gaps = 7/236 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V    I+D LCK+G    A+ LF +M ++ I PNV+TYN +I  FC++   ++A+ 
Sbjct: 52  KADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQ 111

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+++ +  D+VTF+ +++   K RK+ EA  +   M++  + P        + Y  
Sbjct: 112 LLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFP------TTITYNS 165

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK  ++ +A+ +  S+   G  P+VVT++  I+  C  +++D   ++F +M  +G
Sbjct: 166 MIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 225

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEI 247
           +  N V +TTL+  F +  +     +LL  M    V P Y +   ++  L  K E+
Sbjct: 226 IVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKEL 281



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 20/230 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN----------VVTYNSLIHGF 61
           C+PN VT+NT+++ LC+EG V +A  L  +M +E   PN          VV   +++   
Sbjct: 6   CRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRL 65

Query: 62  CYANDGNE--AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           C   DGN   A+ LF EM ++G+  +V+T+N ++D  C + +  +A +LL  MI+  + P
Sbjct: 66  C--KDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINP 123

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           D      IV +  LI+   K  K+  A E+ + + R  + P  +TYN  I   C  +++D
Sbjct: 124 D------IVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVD 177

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            A  +   M  KG +P+ V F+TL+  + +       +E+   M +R ++
Sbjct: 178 DAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIV 227



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 93/161 (57%), Gaps = 9/161 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T+TYN++IDG CK+  VD AK +   M  +  +P+VVT+++LI+G+C A   +    +
Sbjct: 158 PTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEI 217

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RG+ ++ VT+  ++   C+   +D A  LL+ MI  GV PD       + + C+
Sbjct: 218 FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPD------YITFHCM 271

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
           + GLC   +L+ A  + + L ++ + P ++ +   + +LC+
Sbjct: 272 LAGLCSKKELRKAFAILEDLQKSEVCPRLIFF---LFSLCS 309



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 96/174 (55%), Gaps = 4/174 (2%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI----VAYGC 132
           M++ G + +VVTFN +M+ LC+  ++ EA  L+D M++ G +P+A  + +I    V    
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D LCK G   NA+ L   +   G+ PNV+TYN  I + C+  +   A  L   M  K 
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ 120

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + P+ V F+ L+ +F+++ + S+  E+ + M + ++ P     + ++D   K +
Sbjct: 121 INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQD 174



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 64/108 (59%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT++T+I+G CK   VD   E+F +M    I  N VTY +LIHGFC   D + A+
Sbjct: 191 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 250

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
            L  EM+  G+  D +TF+ ++  LC  +++ +A  +L+ + +  V P
Sbjct: 251 DLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVCP 298


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 139/242 (57%), Gaps = 14/242 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G++ +PN V YNTIID LCK+  V  A +L  +M  + I P+VVTY +LI+G        
Sbjct: 197 GLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLK 256

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  LF +M+ + ++ DV TFN+++D LCK  +M +A  +L +MI+ GV      + NIV
Sbjct: 257 EAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGV------DSNIV 310

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG   + +   A  +  ++ R G+ P+V +Y+I I+ LC  + +D+A +LF +M
Sbjct: 311 TYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEM 370

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVK 244
             K +APN V + +L+   ++    S   +L+  M  R    +V+ Y+S+L    D L K
Sbjct: 371 HSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLL----DALCK 426

Query: 245 NE 246
           N 
Sbjct: 427 NH 428



 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 123/210 (58%), Gaps = 6/210 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y+ +I+GLCK   VD+A  LF +M  +++ PN VTYNSLI G       ++A  L
Sbjct: 342 PDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDL 401

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +RG  +DV+T++ ++D LCKN ++D+A  L+  +   G++P      NI  Y  L
Sbjct: 402 VNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQP------NIYTYTIL 455

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+LK+A+ + Q L   G   +V  YN+ ++ LC +   D+A  L   ME  G 
Sbjct: 456 VDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGC 515

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+ V + TL+ +    ++  K ++LLR M
Sbjct: 516 IPDAVTYETLVRALFENDKNDKAVKLLREM 545



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 132/263 (50%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T+N ++DGLCKEG + KA+ +   M  + ++ N+VTYNSL+ G+      N+A +
Sbjct: 271 KPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATF 330

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT-------------------RLLDLMI 113
           +F  M  RG+  DV +++++++ LCK + +DEA                     L+D ++
Sbjct: 331 VFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLL 390

Query: 114 QGGVRPDAFCEIN----------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           + G   DA+  +N          ++ Y  L+D LCK  ++  A  L   +   G+ PN+ 
Sbjct: 391 KYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIY 450

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY I +  LC + ++  A  ++ D+ +KG   +  ++  ++    ++    + + L+  M
Sbjct: 451 TYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKM 510

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
           +    +P A     +V  L +N+
Sbjct: 511 EDNGCIPDAVTYETLVRALFEND 533



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 6/226 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N I+  L K      A     QM+ + I P++ T+N LI+ FC+    N A  +  ++ 
Sbjct: 67  FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIF 126

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G   D VT   ++  LC N K+ EA    D +I  G   D       V+YG LI+GLC
Sbjct: 127 KLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQ------VSYGTLINGLC 180

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G+ + A ++ + +    + PNVV YN  I +LC D+ +  A DL  +M VK + P+ V
Sbjct: 181 KTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVV 240

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +TTL+   +      + + L   M  +N+ P     +I+VD L K
Sbjct: 241 TYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCK 286



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 13/254 (5%)

Query: 1   MANGNREFGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT 53
           + + N  F V+ K       P+TVT  T+I GLC  G V +A      +  +  + + V+
Sbjct: 112 LGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVS 171

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           Y +LI+G C   +   A  +  ++    +Q +VV +N I+D LCK++ +  A+ L   MI
Sbjct: 172 YGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMI 231

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
              + PD      ++ YGCLI     +G+LK A  L   +    + P+V T+NI +  LC
Sbjct: 232 VKRIFPDVVTYTTLI-YGCLI-----VGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLC 285

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            + +M KA ++   M  +GV  N V + +LM  +    + +K   +  +M +R V P   
Sbjct: 286 KEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQ 345

Query: 234 ILSIIVDLLVKNEI 247
             SI+++ L K ++
Sbjct: 346 SYSIMINGLCKTKM 359



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 1/105 (0%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY  ++DGLCK G +  A+ ++  +  +  + +V  YN +++G C     +EA  
Sbjct: 446 QPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALS 505

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGG 116
           L  +M D G   D VT+  ++  L +N K D+A +LL ++++QG 
Sbjct: 506 LVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQGS 550



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           +  FN I+  L K      A      M    ++PD F       +  LI+  C +G L  
Sbjct: 64  IFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLF------TFNILINCFCHLGHLNF 117

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           A  +   + + G  P+ VT    I  LC + ++ +A     D+  KG   + V + TL+ 
Sbjct: 118 AFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLIN 177

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
              +  ET   +++LR +D   V P   + + I+D L K+++ +++
Sbjct: 178 GLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHA 223


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 130/229 (56%), Gaps = 7/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + + YNT++ GL K+G V +A +L   M +   +P++ TYN +++G C     ++A  
Sbjct: 388 KHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANG 447

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  + + +G   D+ TFN ++D  CK R MD+A  +LD M+  G+ PD      ++ Y  
Sbjct: 448 ILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPD------VITYNT 501

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLCK  KL N  +  +++   G  PN++TYNI I + C D ++ +A +LF +M+ +G
Sbjct: 502 LLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRG 561

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS-ILSIIVD 240
           + P+ V   TL+       E  K  EL  +++K     Y++ I +I+++
Sbjct: 562 LTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMIN 610



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 133/265 (50%), Gaps = 29/265 (10%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C+ N V+Y  +I G  KE    +A  LF +M  + I P+++T+N LIH  C   +  
Sbjct: 174 GQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQ 233

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-------- 120
           E+E LF ++M RG+  ++ TFN+ +  LC+   +DEA RLL+ ++  G+ PD        
Sbjct: 234 ESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293

Query: 121 -AFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             FC                    E N   Y  +I+G CK G ++NA ++ +     G +
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFI 353

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+  TY+  I+ LCND  M++A  +F +   KG   + +++ TL+    ++    + ++L
Sbjct: 354 PDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQL 413

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
           ++ M +    P     +++V+ L K
Sbjct: 414 MKDMMEHGCSPDIWTYNLVVNGLCK 438



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 124/247 (50%), Gaps = 6/247 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TYNTII+G CK G +  A ++      +   P+  TY+SLI+G C   D N A  
Sbjct: 318 EPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMA 377

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F E M++G +  ++ +N ++  L K   + +A +L+  M++ G  PD      I  Y  
Sbjct: 378 VFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD------IWTYNL 431

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK+G L +A  +       G +P++ T+N  I   C    MDKA ++   M   G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P+ + + TL+    +  +   V++  ++M ++   P     +I+++   K+     ++
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM 551

Query: 253 PQFNRQK 259
             F   K
Sbjct: 552 ELFKEMK 558



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 7/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYN +++GLCK G +  A  +      +   P++ T+N+LI G+C   + ++A 
Sbjct: 422 CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAI 481

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G+  DV+T+N +++ LCK RK+D        M++ G  P      NI+ Y 
Sbjct: 482 EILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTP------NIITYN 535

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+  CK  K+  A EL + +   GL P++VT    I  LC++ ++DKA++LF+ +E +
Sbjct: 536 ILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595

Query: 192 -GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + +  IF  ++ +F  K   S   +L   M   +  P      +++D   K
Sbjct: 596 YKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCK 649



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 9/211 (4%)

Query: 2   ANG--NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH 59
           ANG  N      C P+  T+NT+IDG CK+  +DKA E+   M    I P+V+TYN+L++
Sbjct: 445 ANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLN 504

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G C A   +     F  M+++G   +++T+N++++  CK+RK+ EA  L   M   G+ P
Sbjct: 505 GLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTP 564

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQM 178
           D      IV    LI GLC  G+L  A EL  ++ +      +   +NI I+A C    +
Sbjct: 565 D------IVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNV 618

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
             A  LF  M     AP+   +  ++ S+ +
Sbjct: 619 SMAEKLFHKMGGSDCAPDNYTYRVMIDSYCK 649



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 45/264 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP---------------------- 49
           C+P+  +YN I++ L + G+  +A +++++MKD  I P                      
Sbjct: 107 CEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAAL 166

Query: 50  -------------NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                        N V+Y ++I GF   N   EA +LF EM+ +G+  D++TFN ++  L
Sbjct: 167 RLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVL 226

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK   + E+ +L   +++ GV P      N+  +   I GLC+ G +  A  L +S+   
Sbjct: 227 CKKGNVQESEKLFSKVMKRGVCP------NLFTFNIFIQGLCRKGAIDEAARLLESIVSE 280

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P+V++YN  I   C   ++ +A      M   GV PN   + T++  F +       
Sbjct: 281 GLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNA 340

Query: 217 IELLRSMDKRNVMP----YASILS 236
            ++LR    +  +P    Y+S+++
Sbjct: 341 DKILRDAMFKGFIPDEFTYSSLIN 364



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 6/212 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y  I+    ++G V +A  +F +M   +  P+V +YN++++        ++A  +++ M 
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMK 138

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           D G+  DV T  + M   C   +   A RLL+ M      P   CE N V+Y  +I G  
Sbjct: 139 DIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNM------PGQGCEFNAVSYCAVISGFY 192

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K      A  L   + + G+ P+++T+N  IH LC    + ++  LF  +  +GV PN  
Sbjct: 193 KENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLF 252

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            F   +    RK    +   LL S+    + P
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTP 284



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 56/106 (52%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T  +N +I+  C +  V  A++LF +M   +  P+  TY  +I  +C   + + A    
Sbjct: 601 STAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFL 660

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +E + +GL     T   +++ LC   ++ EA  +++LM+Q G+ P+
Sbjct: 661 LENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y T++DG+CKEG ++ A E+  +M    + PNVV YN+++ G C A    +AE
Sbjct: 291 CTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAE 350

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM D     D VTFN+++D  C+N  +     LL+ M++ G  PD      ++ Y 
Sbjct: 351 ELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPD------VITYT 404

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L +S+   G  PN ++Y I +  LC+ E+   A DL   M  +
Sbjct: 405 TVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQ 464

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G +PN V F T++    +K    + IELL+ M      P     S ++D L K
Sbjct: 465 GCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGK 517



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG +D+A  L   M      PN ++Y  ++ G C A    +AE
Sbjct: 396 CVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAE 455

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+++G   + VTFN +++ LCK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 456 DLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPD------LISYS 509

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK   A EL   +   G+ PN + Y+    AL  + ++++   +F +++  
Sbjct: 510 TVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDV 569

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +  + V++  ++ S  ++  T + IE L  M     MP  S  +I++
Sbjct: 570 TIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILI 617



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 8/240 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            FG  C P+ V+YN ++ GLC      + ++L  +M      PNVVT+N+LI   C    
Sbjct: 218 SFG--CDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGL 275

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
                 +  +M+D G   D+  +  ++D +CK   ++ A  +LD M   G++P      N
Sbjct: 276 FERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKP------N 329

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  ++ GLC   + + A EL   +       + VT+NI +   C +  + +  +L  
Sbjct: 330 VVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLE 389

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M   G  P+ + +TT++  F ++    + + LL+SM      P     +I++  L   E
Sbjct: 390 QMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAE 449



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 110/219 (50%), Gaps = 8/219 (3%)

Query: 12  CKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           C+PNT++Y  ++ GLC  E +VD A++L  QM ++  +PN VT+N++I+  C      +A
Sbjct: 431 CRPNTISYTIVLKGLCSAERWVD-AEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQA 489

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  +M+  G   D+++++ ++D L K  K DEA  LL++M+  G+ P      N + Y
Sbjct: 490 IELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP------NTIIY 543

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +   L K G++    ++  ++    +  + V YN  I +LC     D+A +    M  
Sbjct: 544 SSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVS 603

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            G  PN   +T L+     +    +  E+L  +  +  +
Sbjct: 604 SGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 642



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 15/231 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG---NEA 70
           PN  TY  ++  LC  G +  A  +  +M+     P    Y+ ++   C    G     A
Sbjct: 113 PNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSA 172

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELC-KNRKMDEATRLL-DLMIQGGVRPDAFCEINIV 128
             +  ++  RG   DV   N++++ +C +   +DEA RLL DL    G  PD      +V
Sbjct: 173 VRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPD------VV 226

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  ++ GLC   +    ++L + + R G  PNVVT+N  I  LC +   ++ H +   M
Sbjct: 227 SYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQM 286

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
              G  P+  ++ T++    ++       E+L  M     K NV+ Y ++L
Sbjct: 287 VDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVL 337



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 24/251 (9%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YN ++ G C+ G +  A+ L   +    + PN  TY  ++   C      +A  +  EM 
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVP---VPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 79  DRGLQSDVVTFNVIMDELCKNRK---MDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLI 134
            RG       ++VI++  C          A R+L DL  +G       C +++     ++
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRG-------CALDVGNCNLVL 195

Query: 135 DGLC-KIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           + +C + G +  A  L + L T  G  P+VV+YN  +  LC  ++  +  DL  +M   G
Sbjct: 196 NAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVG 255

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIV---DLLVKN 245
             PN V F TL+    R     +V ++L  M      P    YA++L  +     L V +
Sbjct: 256 CPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAH 315

Query: 246 EISLNSIPQFN 256
           EI L+ +P + 
Sbjct: 316 EI-LDRMPSYG 325



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 32/72 (44%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  + + V YN +I  LCK G  D+A E    M      PN  TY  LI G        E
Sbjct: 569 VTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKE 628

Query: 70  AEYLFIEMMDRG 81
           A+ +  E+  +G
Sbjct: 629 AQEMLTELCSKG 640


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  PN VT+ T+IDG CK G +D A   F  MKD  I P+++TYN+LI+G C   D
Sbjct: 324 EMGLV--PNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGD 381

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA  L  EM+  G + D +TF  +MD  CK+  MD A  + D M++ G+      E++
Sbjct: 382 LKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGI------ELD 435

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            VA+  LI GLC+ G++++A  + + +  AG  P+  TY + I   C    +     L  
Sbjct: 436 DVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLK 495

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +M+  G  P  V +  LM  F ++ +      LL +M    V+P     +I++D   K+ 
Sbjct: 496 EMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHG 555

Query: 247 ISLN 250
            S++
Sbjct: 556 SSVD 559



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+I G C+   V++   L   M+ E I+P+V TY++LI+G C  +   EA  
Sbjct: 258 RPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANG 317

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM + GL  + VTF  ++D  CK+ K+D A R  ++M   G+RPD      ++ Y  
Sbjct: 318 LFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPD------LITYNA 371

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLC+ G LK AR+L   +   G  P+ +T+   +   C D  MD A ++   M  +G
Sbjct: 372 LINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEG 431

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V FT L+    R         +L+ M      P     ++++D   K
Sbjct: 432 IELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCK 483



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 6/210 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   +N ++ G CK G V  A+ +F ++    + P+VV++N+LI G+C + +  E   L
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVL 283

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M    +  DV T++ +++ LCK  +++EA  L D M + G+ P      N V +  L
Sbjct: 284 KSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVP------NGVTFTTL 337

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK GK+  A    + +   G+ P+++TYN  I+ LC D  + +A  L  +M   G 
Sbjct: 338 IDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGF 397

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+ + FTTLM    +  +    +E+   M
Sbjct: 398 KPDKITFTTLMDGCCKDGDMDSALEIKDRM 427



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           E +L++ D    PNV  +N L+HGFC   D   A  +F E+  RGL+  VV+FN ++   
Sbjct: 212 EFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGY 271

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C+++ ++E   L  +M    + PD F       Y  LI+GLCK  +++ A  L   +   
Sbjct: 272 CRSKNVEEGFVLKSVMESERISPDVF------TYSALINGLCKESRVEEANGLFDEMCEM 325

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL+PN VT+   I   C   ++D A   F  M+ +G+ P+ + +  L+    R  +  + 
Sbjct: 326 GLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEA 385

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +LL  M      P     + ++D   K+
Sbjct: 386 RKLLNEMIGNGFKPDKITFTTLMDGCCKD 414



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 110/212 (51%), Gaps = 19/212 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +T+ T++DG CK+G +D A E+  +M +E I  + V + +LI G C      +AE 
Sbjct: 398 KPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAER 457

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G + D  T+ +++D  CK   +    +LL  M + G  P       +V Y  
Sbjct: 458 MLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVP------GVVTYNA 511

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-- 190
           L++G CK G++KNA+ L  ++    ++PN +T+NI +   C        H   +D ++  
Sbjct: 512 LMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCK-------HGSSVDFKIFN 564

Query: 191 --KGVAPNCVIFTTLMPSFIR--KNETSKVIE 218
             KG+  +   +T L+   I+  K++   V+E
Sbjct: 565 GEKGLVSDYASYTALVNESIKISKDQLKSVLE 596


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+N +I  LC+ G V+ A E+  QM      PN ++YN L+H FC     ++A 
Sbjct: 302 CPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAM 361

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+ RG   D+V++N ++  LC+N ++D A  LL  +   G      C   +++Y 
Sbjct: 362 EFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKG------CSPVLISYN 415

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK K A EL   +T  GL P+++TY+     LC ++++++A   F  ++  
Sbjct: 416 TVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDM 475

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G+ P   ++  ++    ++ ET   I+L   M     MP  S  +I+V+ L 
Sbjct: 476 GIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLA 527



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN +++G+C+EG V+ A E    +      PN V+YN ++ G   A    +AE
Sbjct: 232 CAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAE 291

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +G   +VVTFN+++  LC+   ++ A  +L+ M Q G      C  N ++Y 
Sbjct: 292 KLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYG------CTPNSLSYN 345

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   CK  K+  A E  + +   G  P++V+YN  + ALC + ++D A +L   ++ K
Sbjct: 346 PLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDK 405

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           G +P  + + T++    +  +T + +ELL  M  + + P    Y++I S
Sbjct: 406 GCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIAS 454



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 9/217 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + YN ++ G C  G +D A+ L   M    + P+  TYN+LI G C     + A  +
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAV 188

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M  RG   DVVT+ ++++  CK     +A +LLD M   G  PD      IV Y  +
Sbjct: 189 LEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPD------IVTYNVV 242

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+C+ G++++A E  ++L   G  PN V+YNI +  L   E+ + A  L  +M  KG 
Sbjct: 243 LNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGC 302

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V F  L+    R+      +E+L  M +    P
Sbjct: 303 PPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTP 339



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 6/182 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT++  LC+ G VD A EL  Q+KD+  +P +++YN++I G   A    EA 
Sbjct: 372 CYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEAL 431

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +GLQ D++T++ I   LC+  +++EA R    +   G+RP A        Y 
Sbjct: 432 ELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTA------ALYN 485

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLCK  +  NA +L   +  +G MPN  TY I +  L  +  + +A +LF  +  +
Sbjct: 486 AILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSR 545

Query: 192 GV 193
           GV
Sbjct: 546 GV 547



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY  +++  CK     +A +L  +M D+   P++VTYN +++G C      +A 
Sbjct: 197 CLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAM 256

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                +   G + + V++N+++  L    + ++A +L++ M   G      C  N+V + 
Sbjct: 257 EFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKG------CPPNVVTFN 310

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G ++ A E+ + + + G  PN ++YN  +HA C  +++ KA +    M  +
Sbjct: 311 MLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSR 370

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V + TL+ +  R  E    IELL  +  +   P     + ++D L K
Sbjct: 371 GCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTK 423


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA- 70
           C P+ VT+N +I+ LC++G + +A ++  +M      PN ++YN L+HGFC     + A 
Sbjct: 183 CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAI 242

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           EYL I M+ RG   D+VT+N ++  LCK+ K+D A  +L+ +   G      C   ++ Y
Sbjct: 243 EYLDI-MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG------CSPVLITY 295

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGL K+GK + A +L   + R GL P+++TY+  +  L  + ++D+A   F D+E 
Sbjct: 296 NTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEG 355

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ PN + + ++M    +  +T + I+ L  M  +   P  +  +I+++
Sbjct: 356 LGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 405



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYN +I+G+CKEG +D+A +    M      PNV+T+N ++   C      +AE 
Sbjct: 114 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 173

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ +G    VVTFN++++ LC+   +  A  +L+ M   G  P      N ++Y  
Sbjct: 174 LLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP------NSLSYNP 227

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G CK  K+  A E    +   G  P++VTYN  + ALC D ++D A ++   +  KG
Sbjct: 228 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 287

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
            +P  + + T++    +  +T + I+LL  M ++ + P    Y+S++S
Sbjct: 288 CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVS 335



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           ++  +   CKE  V +A +L  +M+++   P+VVTYN LI+G C     +EA      M 
Sbjct: 85  FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 144

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G Q +V+T N+I+  +C   +  +A +LL  M++ G      C  ++V +  LI+ LC
Sbjct: 145 SYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG------CSPSVVTFNILINFLC 198

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           + G L  A ++ + +   G  PN ++YN  +H  C +++MD+A +    M  +G  P+ V
Sbjct: 199 RQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIV 258

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + TL+ +  +  +    +E+L  +  +   P     + ++D L K
Sbjct: 259 TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 304



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 57/105 (54%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY++++ GL +EG VD+A + F  ++   I PN +TYNS++ G C +   + A  
Sbjct: 324 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 383

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
               M+ +  +    T+ ++++ +       EA  LL+ +   G+
Sbjct: 384 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 428



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 37/74 (50%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  +PN +TYN+I+ GLCK    D+A +    M  +   P   TY  LI G  Y     
Sbjct: 355 GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAK 414

Query: 69  EAEYLFIEMMDRGL 82
           EA  L  E+  RGL
Sbjct: 415 EALDLLNELCSRGL 428



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 53/121 (43%)

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++  +   +   CK   +  A +L   +   G  P+VVTYN+ I+ +C + ++D+A   
Sbjct: 80  FSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 139

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +M   G  PN +    ++ S           +LL  M ++   P     +I+++ L +
Sbjct: 140 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 199

Query: 245 N 245
            
Sbjct: 200 Q 200


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 130/229 (56%), Gaps = 7/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + + YNT++ GL K+G V +A +L   M +   +P++ TYN +++G C     ++A  
Sbjct: 388 KHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANG 447

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  + + +G   D+ TFN ++D  CK R MD+A  +LD M+  G+ PD      ++ Y  
Sbjct: 448 ILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPD------VITYNT 501

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLCK  KL N  +  +++   G  PN++TYNI I + C D ++ +A +LF +M+ +G
Sbjct: 502 LLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRG 561

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS-ILSIIVD 240
           + P+ V   TL+       E  K  EL  +++K     Y++ I +I+++
Sbjct: 562 LTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMIN 610



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 133/265 (50%), Gaps = 29/265 (10%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C+ N V+Y  +I G  KE    +A  LF +M  + I P+++T+N LIH  C   +  
Sbjct: 174 GQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQ 233

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-------- 120
           E+E LF ++M RG+  ++ TFN+ +  LC+   +DEA RLL+ ++  G+ PD        
Sbjct: 234 ESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293

Query: 121 -AFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             FC                    E N   Y  +I+G CK G ++NA ++ +     G +
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFI 353

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+  TY+  I+ LCND  M++A  +F +   KG   + +++ TL+    ++    + ++L
Sbjct: 354 PDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQL 413

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
           ++ M +    P     +++V+ L K
Sbjct: 414 MKDMMEHGCSPDIWTYNLVVNGLCK 438



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 124/247 (50%), Gaps = 6/247 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TYNTII+G CK G +  A ++      +   P+  TY+SLI+G C   D N A  
Sbjct: 318 EPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMA 377

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F E M++G +  ++ +N ++  L K   + +A +L+  M++ G  PD      I  Y  
Sbjct: 378 VFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD------IWTYNL 431

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK+G L +A  +       G +P++ T+N  I   C    MDKA ++   M   G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P+ + + TL+    +  +   V++  ++M ++   P     +I+++   K+     ++
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM 551

Query: 253 PQFNRQK 259
             F   K
Sbjct: 552 ELFKEMK 558



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 7/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYN +++GLCK G +  A  +      +   P++ T+N+LI G+C   + ++A 
Sbjct: 422 CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAI 481

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G+  DV+T+N +++ LCK RK+D        M++ G  P      NI+ Y 
Sbjct: 482 EILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTP------NIITYN 535

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+  CK  K+  A EL + +   GL P++VT    I  LC++ ++DKA++LF+ +E +
Sbjct: 536 ILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595

Query: 192 -GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + +  IF  ++ +F  K   S   +L   M   +  P      +++D   K
Sbjct: 596 YKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCK 649



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 9/211 (4%)

Query: 2   ANG--NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH 59
           ANG  N      C P+  T+NT+IDG CK+  +DKA E+   M    I P+V+TYN+L++
Sbjct: 445 ANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLN 504

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G C A   +     F  M+++G   +++T+N++++  CK+RK+ EA  L   M   G+ P
Sbjct: 505 GLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTP 564

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQM 178
           D      IV    LI GLC  G+L  A EL  ++ +      +   +NI I+A C    +
Sbjct: 565 D------IVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNV 618

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
             A  LF  M     AP+   +  ++ S+ +
Sbjct: 619 SMAEKLFHKMGGSDCAPDNYTYRVMIDSYCK 649



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 45/264 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP---------------------- 49
           C+P+  +YN I++ L + G+  +A +++++MKD  I P                      
Sbjct: 107 CEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAAL 166

Query: 50  -------------NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                        N V+Y ++I GF   N   EA +LF EM+ +G+  D++TFN ++  L
Sbjct: 167 RLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVL 226

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK   + E+ +L   +++ GV P      N+  +   I GLC+ G +  A  L +S+   
Sbjct: 227 CKKGNVQESEKLFSKVMKRGVCP------NLFTFNIFIQGLCRKGAIDEAARLLESIVSE 280

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P+V++YN  I   C   ++ +A      M   GV PN   + T++  F +       
Sbjct: 281 GLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNA 340

Query: 217 IELLRSMDKRNVMP----YASILS 236
            ++LR    +  +P    Y+S+++
Sbjct: 341 DKILRDAMFKGFIPDEFTYSSLIN 364



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 6/212 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y  I+    ++G V +A  +F +M   +  P+V +YN++++        ++A  +++ M 
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMK 138

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           D G+  DV T  + M   C   +   A RLL+ M      P   CE N V+Y  +I G  
Sbjct: 139 DIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNM------PGQGCEFNAVSYCAVISGFY 192

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K      A  L   + + G+ P+++T+N  IH LC    + ++  LF  +  +GV PN  
Sbjct: 193 KENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLF 252

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            F   +    RK    +   LL S+    + P
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTP 284



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 57/106 (53%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T  +N +I+  C++  V  A++LF +M   +  P+  TY  +I  +C   + + A    
Sbjct: 601 STAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFL 660

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +E + +GL     T   +++ LC   ++ EA  +++LM+Q G+ P+
Sbjct: 661 LENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA- 70
           C P+ VT+N +I+ LC++G + +A ++  +M      PN ++YN L+HGFC     + A 
Sbjct: 352 CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAI 411

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           EYL I M+ RG   D+VT+N ++  LCK+ K+D A  +L+ +   G  P       ++ Y
Sbjct: 412 EYLDI-MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP------VLITY 464

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGL K+GK + A +L   + R GL P+++TY+  +  L  + ++D+A   F D+E 
Sbjct: 465 NTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEG 524

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ PN + + ++M    +  +T + I+ L  M  +   P  +  +I+++
Sbjct: 525 LGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 574



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYN +I+G+CKEG +D+A +    M      PNV+T+N ++   C      +AE 
Sbjct: 283 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 342

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ +G    VVTFN++++ LC+   +  A  +L+ M   G  P      N ++Y  
Sbjct: 343 LLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP------NSLSYNP 396

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G CK  K+  A E    +   G  P++VTYN  + ALC D ++D A ++   +  KG
Sbjct: 397 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 456

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
            +P  + + T++    +  +T + I+LL  M ++ + P    Y+S++S
Sbjct: 457 CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVS 504



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 117/217 (53%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNTI+  LC  G + +A E+  +   +   P+V+TY  LI   C  +   +A  L
Sbjct: 214 PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 273

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM ++G + DVVT+NV+++ +CK  ++DEA + L+ M      P   C+ N++ +  +
Sbjct: 274 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM------PSYGCQPNVITHNII 327

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  +C  G+  +A +L   + R G  P+VVT+NI I+ LC    + +A D+   M + G 
Sbjct: 328 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGC 387

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + +  L+  F ++ +  + IE L  M  R   P
Sbjct: 388 TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 424



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 125/240 (52%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +R+    C P+ +TY  +I+  CKE  V +A +L  +M+++   P+VVTYN LI+G C  
Sbjct: 240 DRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 299

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA      M   G Q +V+T N+I+  +C   +  +A +LL  M++ G  P     
Sbjct: 300 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSP----- 354

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++V +  LI+ LC+ G L  A ++ + +   G  PN ++YN  +H  C +++MD+A + 
Sbjct: 355 -SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 413

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M  +G  P+ V + TL+ +  +  +    +E+L  +  +   P     + ++D L K
Sbjct: 414 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 473



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 17/221 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +I G CK G +D A ++  +M   N+ P+VVTYN+++   C +    +A   
Sbjct: 182 PDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQA--- 235

Query: 74  FIEMMDRGLQS----DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            +E++DR LQ     DV+T+ ++++  CK   + +A +LLD M   G +PD      +V 
Sbjct: 236 -MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD------VVT 288

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI+G+CK G+L  A +   ++   G  PNV+T+NI + ++C+  +   A  L  DM 
Sbjct: 289 YNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML 348

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            KG +P+ V F  L+    R+    + I++L  M      P
Sbjct: 349 RKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 389



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 9/182 (4%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P+++   SLI GFC      +A ++   +   G   DV+T+NV++   CK+ ++D A ++
Sbjct: 147 PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV 206

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           LD M    V PD      +V Y  ++  LC  GKLK A E+     +    P+V+TY I 
Sbjct: 207 LDRM---NVAPD------VVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTIL 257

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I A C +  + +A  L  +M  KG  P+ V +  L+    ++    + I+ L +M     
Sbjct: 258 IEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGC 317

Query: 229 MP 230
            P
Sbjct: 318 QP 319



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 10/177 (5%)

Query: 69  EAEYLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           E  + F+E M+ RG   D++    ++   C+  K  +AT +++++ Q G  PD      +
Sbjct: 131 EDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD------V 184

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + Y  LI G CK G++ NA    Q L R  + P+VVTYN  +  LC+  ++ +A ++   
Sbjct: 185 ITYNVLISGYCKSGEIDNAL---QVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDR 241

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              K   P+ + +T L+ +  +++   + ++LL  M  +   P     +++++ + K
Sbjct: 242 QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 298



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 9/152 (5%)

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +  L +N ++++  + L+ M+  G  PD      I+    LI G C+IGK K A  + + 
Sbjct: 121 LRRLVRNGELEDGFKFLESMVYRGDIPD------IIPCTSLIRGFCRIGKTKKATWVMEI 174

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           L ++G +P+V+TYN+ I   C   ++D A  +   M    VAP+ V + T++ +     +
Sbjct: 175 LEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGK 231

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + +E+L    ++   P     +I+++   K
Sbjct: 232 LKQAMEVLDRQLQKECYPDVITYTILIEATCK 263



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 57/105 (54%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY++++ GL +EG VD+A + F  ++   I PN +TYNS++ G C +   + A  
Sbjct: 493 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 552

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
               M+ +  +    T+ ++++ +       EA  LL+ +   G+
Sbjct: 553 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 37/74 (50%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  +PN +TYN+I+ GLCK    D+A +    M  +   P   TY  LI G  Y     
Sbjct: 524 GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAK 583

Query: 69  EAEYLFIEMMDRGL 82
           EA  L  E+  RGL
Sbjct: 584 EALDLLNELCSRGL 597


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 128/250 (51%), Gaps = 8/250 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN V+YNT+IDG  KEG VDKA  LF +M  + + P+VVTYNSLI G C A   +
Sbjct: 193 GYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMD 252

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +   M D+G+  D  T+N+++   C   +++EA RLL  M   G++PD      +V
Sbjct: 253 KAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPD------VV 306

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI   CKIG+   AR +  S+ R G  PN   Y+I +H       +    DL LD+
Sbjct: 307 TYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDL-LDL 365

Query: 189 EVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            ++ G+      F  L+ ++ +     K +     M +  + P     S ++ +L K   
Sbjct: 366 MIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGR 425

Query: 248 SLNSIPQFNR 257
             +++  FN+
Sbjct: 426 VEDAVYHFNQ 435



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 10/221 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCYANDGNEA 70
           P+  +YN +I GLC E    +A EL + M  +   N +PNVV+YN++I GF    + ++A
Sbjct: 160 PDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKA 219

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            +LF EMM +GL  DVVT+N ++D LCK + MD+A  +L  M   GV PD         Y
Sbjct: 220 YFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDT------RTY 273

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I G C +G+L+ A  L + ++ +GL P+VVTY++ I   C   +  +A  +F  M  
Sbjct: 274 NIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVR 333

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
           KG  PN  I+  L+  +  K     V +LL  M  R+ +P+
Sbjct: 334 KGQKPNSTIYHILLHGYATKGALIDVRDLLDLM-IRDGIPF 373



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 109/192 (56%), Gaps = 7/192 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+Y+T+I  LCK G V+ A   F QM  E ++PN++++ SLIHG C   +  + E 
Sbjct: 407 RPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEE 466

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM++RG+  D +  N IMD LCK  ++ EA    D++I  GV+PD      +V+Y  
Sbjct: 467 LAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPD------VVSYNT 520

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C +GK+  + +    +   GL P+  TYN  ++    + +++ A  L+ +M  K 
Sbjct: 521 LIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKD 580

Query: 193 VAPNCVIFTTLM 204
           V   C I + +M
Sbjct: 581 V-KFCAITSNIM 591



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 132/238 (55%), Gaps = 6/238 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +R   +  +P++ TYN++++G  K G V+ A  L+ +M  +++    +T N ++HG   A
Sbjct: 539 DRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQA 598

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A  L+++M+DRG Q  + T+N ++  LC+N  +DEA R+ +      +R   F E
Sbjct: 599 GRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFE-----DLRSKEF-E 652

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +++  +  +I+ L K+G++  A+ L  ++   G +P+V+TY++ I +   +  ++++ +L
Sbjct: 653 LDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNL 712

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           FL ME  G A +  +   ++   + K +  +    L  +D++N    AS  ++++ ++
Sbjct: 713 FLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLIPIV 770



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 6/211 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            +N +I    K G VDKA   F +M+   + P+VV+Y+++IH  C      +A Y F +M
Sbjct: 377 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQM 436

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +  GL  ++++F  ++  LC   +  +   L   MI  G+ PDA      +    ++D L
Sbjct: 437 VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDA------IFMNTIMDNL 490

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G++  A++    +   G+ P+VV+YN  I   C   +MD++      M   G+ P+ 
Sbjct: 491 CKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDS 550

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             + +L+  + +       + L R M +++V
Sbjct: 551 WTYNSLLNGYFKNGRVEDALALYREMFRKDV 581



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 125/273 (45%), Gaps = 43/273 (15%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC------ 62
           G   +P+ VTY+ +I   CK G   +A+ +F  M  +   PN   Y+ L+HG+       
Sbjct: 298 GSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALI 357

Query: 63  ---------------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIM 93
                                      YA  G  ++A   F EM   GL+ DVV+++ ++
Sbjct: 358 DVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVI 417

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
             LCK  ++++A    + M+  G+ P      NI+++  LI GLC IG+ K   EL+  +
Sbjct: 418 HILCKTGRVEDAVYHFNQMVSEGLSP------NIISFTSLIHGLCSIGEWKKVEELAFEM 471

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNE 212
              G+ P+ +  N  +  LC + ++ +A D F DM +  GV P+ V + TL+  +    +
Sbjct: 472 INRGIHPDAIFMNTIMDNLCKEGRVVEAQD-FFDMVIHIGVKPDVVSYNTLIDGYCFVGK 530

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             + I+ L  M    + P +   + +++   KN
Sbjct: 531 MDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKN 563



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 29/220 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TYN +I G C  G +++A  L  +M    + P+VVTY+ LI  +C      EA  +
Sbjct: 268 PDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSV 327

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------- 120
           F  M+ +G + +   +++++        + +   LLDLMI+ G+  +             
Sbjct: 328 FDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAK 387

Query: 121 ---------AFCEI-------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                    AF E+       ++V+Y  +I  LCK G++++A      +   GL PN+++
Sbjct: 388 HGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIIS 447

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
           +   IH LC+  +  K  +L  +M  +G+ P+ +   T+M
Sbjct: 448 FTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIM 487



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 4/194 (2%)

Query: 52  VTYNSLIHGFCYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
           VT N LI G C  N  ++A + +F  M + G   DV ++N ++  LC  +K  EA  LL 
Sbjct: 127 VTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLI 186

Query: 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170
            M   G      C  N+V+Y  +IDG  K G++  A  L   +   GL P+VVTYN  I 
Sbjct: 187 HMTADG---GYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLID 243

Query: 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            LC  + MDKA  +   M  KGV P+   +  ++  +    +  + + LL+ M    + P
Sbjct: 244 GLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQP 303

Query: 231 YASILSIIVDLLVK 244
                S+++    K
Sbjct: 304 DVVTYSLLIQYYCK 317



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 10/209 (4%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A  LF  M    +N        LI  FC     + A   F   +  G +   VT N ++ 
Sbjct: 75  AVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIK 134

Query: 95  ELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
            LC   + D+A  ++   M + G  PD F      +Y  LI GLC   K + A EL   +
Sbjct: 135 GLCDGNRTDDAMDMVFRRMPELGYTPDVF------SYNALIKGLCVEKKSQEALELLIHM 188

Query: 154 TRAG---LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           T  G     PNVV+YN  I     + ++DKA+ LF +M  +G+ P+ V + +L+    + 
Sbjct: 189 TADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKA 248

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIV 239
               K + +L+ M  + VMP     +I++
Sbjct: 249 QAMDKAVAILQHMFDKGVMPDTRTYNIMI 277



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 18/161 (11%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE-------ATRLLDLMIQGGVRPDAFCEI 125
           LF E++ +   + V  FN ++  + +             A  L + M++ GV        
Sbjct: 36  LFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGV-------- 87

Query: 126 NIVAY--GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
           N++A   G LI   C +G+L  A        + G     VT N  I  LC+  + D A D
Sbjct: 88  NMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMD 147

Query: 184 L-FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           + F  M   G  P+   +  L+     + ++ + +ELL  M
Sbjct: 148 MVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHM 188


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 118/234 (50%), Gaps = 7/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+  ++   CK+G +    +LF QM D  I+P+ + YN LI G+      +EA 
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+ EM+  GL+  + T+N +++  CK  KM EA  L   M + G  PD      +V Y 
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPD------VVTYS 117

Query: 132 CLIDGLCKIGKLKNARE-LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            +I GLCK GK+  A E L   +   G   N V YN  I+ LC DE +++A+ L  +M  
Sbjct: 118 TIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMAS 177

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           KG  P+ + + T++    R  + S+  +   SM  R   P     + ++D L K
Sbjct: 178 KGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYK 231



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN+I+ GL ++  +D+A+E+F +M      PN  TY+ ++ G C A   ++A  +
Sbjct: 252 PDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKV 311

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   G   DVVT+N+++D LCK   +D+A  L   M+  G  PD      IV+Y  +
Sbjct: 312 LEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD------IVSYSVV 365

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCK  K+ +AR L   +    L+P+VVT+NI +  LC   ++D+A DL   M   G 
Sbjct: 366 LNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGC 425

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           AP+ V + TLM    ++    +   L ++M ++  +
Sbjct: 426 APDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFL 461



 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 29/262 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  NTV YN +I+GLCK+  +++A +L  +M  +   P+ +TYN+++ G C     +EA+
Sbjct: 145 CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAK 204

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
             F  M  RG   DVV +N ++D L K  K DEA +L   +I  G  PD           
Sbjct: 205 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL 264

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C  N   Y  ++ G C+  K+ +A ++ + +++ G +P+V
Sbjct: 265 ARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDV 324

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTYNI +  LC    +DKAH+LF  M   G AP+ V ++ ++    + N+      L   
Sbjct: 325 VTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDR 384

Query: 223 MDKRNVMPYASILSIIVDLLVK 244
           M +R ++P     +I++D L K
Sbjct: 385 MIERKLVPDVVTFNILMDGLCK 406



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 121/236 (51%), Gaps = 7/236 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKE-LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           +P+ VTY+TII GLCK G V +A E LF +M +   + N V YN+LI+G C   +   A 
Sbjct: 110 EPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAY 169

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +G   D +T+N I+  LC+  K+ EA +  D M   G  PD      +VAY 
Sbjct: 170 KLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPD------VVAYN 223

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D L K GK   A +L + +   G MP+ VTYN  +  L     MD+A ++F  M   
Sbjct: 224 GLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVAS 283

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           G APN   ++ ++    R  +     ++L  M K   +P     +I++D L K  +
Sbjct: 284 GCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNL 339



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 103/186 (55%), Gaps = 6/186 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY+ ++ G C+   VD A ++  +M      P+VVTYN L+ G C  N  ++A 
Sbjct: 285 CAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 344

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M+D G   D+V+++V+++ LCK  K+ +A  L D MI+  + PD      +V + 
Sbjct: 345 ELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPD------VVTFN 398

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DGLCK GKL  A++L   +T +G  P+ V YN  ++ L    +  +A  L   M+ K
Sbjct: 399 ILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEK 458

Query: 192 GVAPNC 197
           G   +C
Sbjct: 459 GFLSDC 464



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 62/111 (55%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y+ +++GLCK   V  A+ LF +M +  + P+VVT+N L+ G C A   +EA+
Sbjct: 355 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAK 414

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
            L  +M   G   D V +N +M+ L K  +  +A RL   M + G   D F
Sbjct: 415 DLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 465


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 129/236 (54%), Gaps = 7/236 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V YN IID LCK+G    A+ LF +M D+ I P+V+TY+ +I  FC +    +AE 
Sbjct: 73  KAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQ 132

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  DVVTF+ +++ L K  K+ EA  +   M++ G+ P        + Y  
Sbjct: 133 LLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFP------TTITYNS 186

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK  +L +A+ +  S+      P+VVT++  I+  C  +++D   ++F +M  +G
Sbjct: 187 MIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 246

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEI 247
           +  N V +TTL+  F +  +     +LL  M    V P Y +  S++  L  K E+
Sbjct: 247 IVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKEL 302



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 114/211 (54%), Gaps = 6/211 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y TII+GLCK G  + A  L  +M++ +I  +VV YN++I   C       A+ LF EM 
Sbjct: 44  YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMH 103

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           D+G+  DV+T++ ++D  C++ +  +A +LL  MI+  + PD      +V +  LI+ L 
Sbjct: 104 DKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPD------VVTFSALINALV 157

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GK+  A E+   + R G+ P  +TYN  I   C  ++++ A  +   M  K  +P+ V
Sbjct: 158 KEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVV 217

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            F+TL+  + +       +E+   M +R ++
Sbjct: 218 TFSTLINGYCKAKRVDNGMEIFCEMHRRGIV 248



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VT+ T+++GLC EG V +A  L  +M +E   P    Y ++I+G C   D   A 
Sbjct: 6   CRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESAL 61

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M +  +++ VV +N I+D LCK+     A  L   M   G+ PD      ++ Y 
Sbjct: 62  NLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPD------VITYS 115

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +ID  C+ G+  +A +L + +    + P+VVT++  I+AL  + ++ +A +++ DM  +
Sbjct: 116 GMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRR 175

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P  + + +++  F +++  +    +L SM  ++  P     S +++
Sbjct: 176 GIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLIN 224



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 29/214 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY+ +ID  C+ G    A++L   M +  INP+VVT+++LI+        +EAE +
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA------------ 121
           + +M+ RG+    +T+N ++D  CK  ++++A R+LD M      PD             
Sbjct: 169 YGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCK 228

Query: 122 ----------FCEI-------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                     FCE+       N V Y  LI G C++G L  A++L   +  +G+ PN +T
Sbjct: 229 AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYIT 288

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           +   + +LC+ +++ KA  +  D++   V P  V
Sbjct: 289 FQSMLASLCSKKELRKAFAILEDLQKSEVCPRIV 322



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 10/168 (5%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M++ G + DVVTF  +M+ LC   ++ +A  L+D M++ G +P          YG +I+G
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----------YGTIING 50

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK+G  ++A  L   +    +  +VV YN  I  LC D     A +LF +M  KG+ P+
Sbjct: 51  LCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPD 110

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + ++ ++ SF R    +   +LLR M +R + P     S +++ LVK
Sbjct: 111 VITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVK 158



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M +    P+VVT+ +L++G C      +A  L   M++ G Q     +  I++ LCK   
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
            + A  LL  M +  ++       ++V Y  +ID LCK G   +A+ L   +   G+ P+
Sbjct: 57  TESALNLLSKMEETHIKA------HVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPD 110

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V+TY+  I + C   +   A  L  DM  + + P+ V F+ L+ + +++ + S+  E+  
Sbjct: 111 VITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYG 170

Query: 222 SMDKRNVMPYASILSIIVDLLVKNE 246
            M +R + P     + ++D   K +
Sbjct: 171 DMLRRGIFPTTITYNSMIDGFCKQD 195



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 62/108 (57%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT++T+I+G CK   VD   E+F +M    I  N VTY +LIHGFC   D + A+
Sbjct: 212 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 271

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
            L   M+  G+  + +TF  ++  LC  +++ +A  +L+ + +  V P
Sbjct: 272 DLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEVCP 319


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTY ++IDG CKE  +DKA  +   M  +   PN+ T+N LI+G+C AN  ++   L
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M  RG+ +D VT+N ++   C+  K++ A  L   M+   VRPD      IV+Y  L
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD------IVSYKIL 463

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLC  G+ + A E+ + + ++ +  ++  YNI IH +CN  ++D A DLF  + +KGV
Sbjct: 464 LDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGV 523

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+   +  ++    +K   S+   L R M++    P     +I++
Sbjct: 524 KPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y+ IIDGLCK+G +D A  LF +M+ +    +++ Y +LI GFCYA   ++   
Sbjct: 244 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAK 303

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  DVV F+ ++D   K  K+ EA  L   MIQ G+ PD       V Y  
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT------VTYTS 357

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK  +L  A  +   +   G  PN+ T+NI I+  C    +D   +LF  M ++G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V  + V + TL+  F    +     EL + M  R V P      I++D L  N
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDN 470



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+N +I+G CK   +D   ELF +M    +  + VTYN+LI GFC       A+
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ R ++ D+V++ +++D LC N + ++A  + + + +  +      E++I  Y 
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM------ELDIGIYN 496

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C   K+ +A +L  SL   G+ P+V TYNI I  LC    + +A  LF  ME  
Sbjct: 497 IIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEED 556

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G +PN   +  L+ + + + + +K  +L+  + +      AS L   +  L +
Sbjct: 557 GHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLAR 609



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TVT++T+I+GLC EG V +A EL  +M +    P ++T N+L++G C     ++A  
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M++ G Q + VT+  ++  +CK+ +   A  LL  M +  ++ DA      V Y  
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDA------VKYSI 252

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK G L NA  L   +   G   +++ Y   I   C   + D    L  DM  + 
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F+ L+  F+++ +  +  EL + M +R + P     + ++D   K
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 122/245 (49%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  +T N +++GLC  G V  A  L  +M +    PN VTY  ++   C +     A  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M +R ++ D V +++I+D LCK+  +D A  L + M   G + D      I+ Y  
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD------IIIYTT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C  G+  +  +L + + +  + P+VV ++  I     + ++ +A +L  +M  +G
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           ++P+ V +T+L+  F ++N+  K   +L  M  +   P     +I+++   K  +  + +
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407

Query: 253 PQFNR 257
             F +
Sbjct: 408 ELFRK 412



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 17/215 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYN +I GLCK+G + +A  LF +M+++  +PN  TYN LI       D  ++  
Sbjct: 524 KPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAK 583

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  E+   G   D  T    +  L +             M++ G  PD F    ++   C
Sbjct: 584 LIEEIKRCGFSVDASTLRFALSTLAR-------------MLKAGHEPDVFTFTTLLRPFC 630

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L +       + +A  L +++   G  PNVVTYN  I  L N   + +   +   M  +G
Sbjct: 631 LEEN----ASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERG 686

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
             PN V  +T +    +++     I LLR M+  N
Sbjct: 687 CQPNAVTKSTFISGLCKQDLHGSAILLLRKMENDN 721



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 6/224 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D A +LF +M      P ++ ++ L          +    L  +M  +G+  ++ T +++
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           ++  C+ RK+  A   +  +I+ G  PD       V +  LI+GLC  G++  A EL   
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDT------VTFSTLINGLCLEGRVSEALELVDR 167

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G  P ++T N  ++ LC + ++  A  L   M   G  PN V +  ++    +  +
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           T+  +ELLR M++R +   A   SII+D L K+    N+   FN
Sbjct: 228 TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 271


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 129/236 (54%), Gaps = 7/236 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V YN IID LCK+G    A+ LF +M D+ I P+V+TY+ +I  FC +    +AE 
Sbjct: 73  KAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQ 132

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  DVVTF+ +++ L K  K+ EA  +   M++ G+ P        + Y  
Sbjct: 133 LLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFP------TTITYNS 186

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK  +L +A+ +  S+      P+VVT++  I+  C  +++D   ++F +M  +G
Sbjct: 187 MIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 246

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEI 247
           +  N V +TTL+  F +  +     +LL  M    V P Y +  S++  L  K E+
Sbjct: 247 IVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKEL 302



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 114/212 (53%), Gaps = 6/212 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y TII+GLCK G  + A  L  +M++ +I  +VV YN++I   C       A+ LF EM 
Sbjct: 44  YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMH 103

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           D+G+  DV+T++ ++D  C++ +  +A +LL  MI+  + PD      +V +  LI+ L 
Sbjct: 104 DKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPD------VVTFSALINALV 157

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GK+  A E+   + R G+ P  +TYN  I   C  ++++ A  +   M  K  +P+ V
Sbjct: 158 KEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVV 217

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            F+TL+  + +       +E+   M +R ++ 
Sbjct: 218 TFSTLINGYCKAKRVDNGMEIFCEMHRRGIVA 249



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VT+ T+++GLC EG V +A  L  +M +E   P    Y ++I+G C   D   A 
Sbjct: 6   CRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESAL 61

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M +  +++ VV +N I+D LCK+     A  L   M   G+ PD      ++ Y 
Sbjct: 62  NLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPD------VITYS 115

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +ID  C+ G+  +A +L + +    + P+VVT++  I+AL  + ++ +A +++ DM  +
Sbjct: 116 GMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRR 175

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P  + + +++  F +++  +    +L SM  ++  P     S +++
Sbjct: 176 GIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLIN 224



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 10/168 (5%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M++ G + DVVTF  +M+ LC   ++ +A  L+D M++ G +P          YG +I+G
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----------YGTIING 50

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK+G  ++A  L   +    +  +VV YN  I  LC D     A +LF +M  KG+ P+
Sbjct: 51  LCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPD 110

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + ++ ++ SF R    +   +LLR M +R + P     S +++ LVK
Sbjct: 111 VITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVK 158



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M +    P+VVT+ +L++G C      +A  L   M++ G Q     +  I++ LCK   
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
            + A  LL  M +  ++       ++V Y  +ID LCK G   +A+ L   +   G+ P+
Sbjct: 57  TESALNLLSKMEETHIKA------HVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPD 110

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V+TY+  I + C   +   A  L  DM  + + P+ V F+ L+ + +++ + S+  E+  
Sbjct: 111 VITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYG 170

Query: 222 SMDKRNVMPYASILSIIVDLLVKNE 246
            M +R + P     + ++D   K +
Sbjct: 171 DMLRRGIFPTTITYNSMIDGFCKQD 195



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 58/99 (58%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT++T+I+G CK   VD   E+F +M    I  N VTY +LIHGFC   D + A+
Sbjct: 212 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 271

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
            L   M+  G+  + +TF  ++  LC  +++ +A  +L+
Sbjct: 272 DLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILE 310


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 7/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V+YN +I GLC+ G +D+A  LF++MKD+   PNV TY +LI G C  N  ++A  L 
Sbjct: 257 NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLL 315

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM++R L  D++T+N ++   C+   +D A RLL LM + G+ PD         YGC I
Sbjct: 316 DEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQ------RTYGCFI 369

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D LCK  +++ AR L  SLT  G+  NV+ Y++ I   C   ++D+A  LF  M  K  +
Sbjct: 370 DFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCS 429

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           PN   F  L+          + + L   M K  + P     +I++  ++K 
Sbjct: 430 PNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQ 480



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 7/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY  +I GLC++  V KA  L  +M + N+ P+++TYNSLI G C A   + A 
Sbjct: 289 CYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAY 347

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M +RGL  D  T+   +D LCK+ +++EA RL D + + GV        N++ Y 
Sbjct: 348 RLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGV------SANVIMYS 401

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK+GK+  A  L + +      PN  T+N  IH LC+   + +A  LF  M   
Sbjct: 402 VLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKM 461

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           G+ P    F  L+   +++ +     + L+ M      P A   +  +++
Sbjct: 462 GLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEV 511



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 126/243 (51%), Gaps = 9/243 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+V  P+  TY   ID LCK   V++A+ LF  + +E ++ NV+ Y+ LI G+C   
Sbjct: 354 KERGLV--PDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVG 411

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EA  LF +M+ +    +  TFN ++  LC    + EA  L D M++ G++P      
Sbjct: 412 KVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKP------ 465

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +  +  LI  + K G   +A +  Q +  +G  P   TYN  I   C+  ++ +A D+ 
Sbjct: 466 TVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMM 525

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVK 244
           + M+ +GV P+   +T+L+ ++ +   T    ++L+SM   +  P + + LS+I  L  K
Sbjct: 526 VQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDK 585

Query: 245 NEI 247
             +
Sbjct: 586 RYV 588



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 119/288 (41%), Gaps = 58/288 (20%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N + Y+ +IDG CK G VD+A  LF +M  +N +PN  T+N+LIHG C A +  EA  LF
Sbjct: 396 NVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLF 455

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-----DAFCEINIVA 129
            +M+  GL+  V TFN+++  + K    D+A + L  M+  G +P     +AF E+   A
Sbjct: 456 DQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSA 515

Query: 130 ------------------------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                                   Y  LI    K+G   +A ++ +S+  A   P+  T+
Sbjct: 516 GKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTF 575

Query: 166 NITIHALCNDE-----------------------------QMDKAHDLFLDMEVKGVAPN 196
              I  L +                               + D   +LF +ME  G  P+
Sbjct: 576 LSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPD 635

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              +  L+    +       ++LL  M K  + P   + + ++    K
Sbjct: 636 SKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCK 683



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 11/227 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YN ++  L + G VD+  +L+ +M +E ++ ++ T+N +I+ +C      EA+    +M+
Sbjct: 160 YNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMI 219

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             GL  D  T    +   C+++ +D A R+ + M      P+     N V+Y  LI GLC
Sbjct: 220 QAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEM------PNR----NEVSYNQLIHGLC 269

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           + G++  A  L   +      PNV TY   I  LC  + + KA  L  +M  + + P+ +
Sbjct: 270 EAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR-KNVHKAMGLLDEMLERNLVPDLI 328

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + +L+    R         LL  M +R ++P        +D L K+
Sbjct: 329 TYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKS 375



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           ELF +M+     P+   Y  LI G C   +   A  L  +M   G+    + FN ++   
Sbjct: 622 ELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCC 681

Query: 97  CKNRKMDEATRLLDLMIQGGVRPD-AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           CK +K  EA  +++ MI  G  P    C+        LI GL + G+ +    + + L  
Sbjct: 682 CKLQKYGEAANIVEDMICSGHSPQLEHCKT-------LICGLYEEGETERGNSVFKKLRG 734

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            G   + + + I I  +     +++   LF +ME  G
Sbjct: 735 CGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNG 771



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P++  Y  +I G+CK   +  A +L  QM+ E I+P+ + +N++I   C      EA 
Sbjct: 632 CTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAA 691

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M+  G    +     ++  L +  + +    +   +   G   D       +A+ 
Sbjct: 692 NIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDE------IAWK 745

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            LIDG+ K G ++   +L + + + G   +  TY+I    L
Sbjct: 746 ILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQKL 786


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 10/240 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYA 64
           E GV  +P+T++Y+T++  LC++    +A +L   M  K    +PNVV+YN++IHGF   
Sbjct: 183 ELGV--EPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFRE 240

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            + ++A  LF EMM +G+  DVVT++  +D LCK R MD+A  +L  MI  G  PD    
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDK--- 297

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
              V Y C+I G   +G+ K    + + +TR GLMP++ T N  + +LC   +  +A + 
Sbjct: 298 ---VTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEF 354

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M  KG  P+ V ++ L+  +  +     ++ L  SM+   ++   S+ +I++D   K
Sbjct: 355 FDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGK 414



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 110/221 (49%), Gaps = 14/221 (6%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+ VTY++ ID LCK   +DKA+ +  QM      P+ VTYN +IHG+       
Sbjct: 257 GVV--PDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWK 314

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           E   +F EM  RGL  D+ T N  M  LCK+ K  EA    D M   G +PD      +V
Sbjct: 315 ETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPD------LV 368

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G    G + +   L  S+   G++ +   YNI I A      MD+A  +F  M
Sbjct: 369 TYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQM 428

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           + +GV P+   + T++ +F      S++  L  +MDK N M
Sbjct: 429 QERGVMPDAWTYGTVIAAF------SRMGRLADAMDKFNQM 463



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 6/246 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V+YNT+I G  +EG V KA  LF +M  + + P+VVTY+S I   C A   ++AE
Sbjct: 223 CSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAE 282

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M+  G + D VT+N ++       +  E   +   M + G+ PD F         
Sbjct: 283 LVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIF------TCN 336

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             +  LCK GK K A E   S+   G  P++VTY++ +H    +  +    +LF  ME  
Sbjct: 337 SYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGN 396

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+  +  ++  L+ ++ ++    + + +   M +R VMP A     ++    +     ++
Sbjct: 397 GIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADA 456

Query: 252 IPQFNR 257
           + +FN+
Sbjct: 457 MDKFNQ 462



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 126/253 (49%), Gaps = 9/253 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E GV+  P+  TY T+I    + G +  A + F QM    + P+ + YNSLI GFC   
Sbjct: 429 QERGVM--PDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHG 486

Query: 66  DGNEAEYLFIEMMDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +  +A+ L  EMM RG+ + + V FN I++ LCK  ++ EA  + DL+I  G RPD    
Sbjct: 487 NLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPD---- 542

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ +  LIDG   +GK++ A  +  ++   G+ P+VVTY+  +   C + ++D    L
Sbjct: 543 --VITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLIL 600

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +M  KGV P  + +  ++        T    ++   M +       S   II+  L +
Sbjct: 601 FREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCR 660

Query: 245 NEISLNSIPQFNR 257
           N     +I  F +
Sbjct: 661 NNCDDEAIALFKK 673



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCY 63
           N+   +  KP+T+ YN++I G C  G + KAKEL  +M    I  PN V +NS+I+  C 
Sbjct: 461 NQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCK 520

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
                EA+ +F  ++  G + DV+TFN ++D      KM++A  +LD MI  G+ PD   
Sbjct: 521 EGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPD--- 577

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
              +V Y  L+DG C+ G++ +   L + +   G+ P  +TY I +H L ND +   A  
Sbjct: 578 ---VVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKK 634

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +  +M   G   +      ++    R N   + I L + +   NV    +I++ ++D + 
Sbjct: 635 MCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMY 694

Query: 244 K 244
           K
Sbjct: 695 K 695



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 10/234 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE--A 70
           +P+ VTY+ ++DG C+ G +D    LF +M  + + P  +TY  ++HG    NDG    A
Sbjct: 575 EPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGL--FNDGRTVGA 632

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + +  EM++ G   D+ T  +I+  LC+N   DEA  L   +    V+       NI   
Sbjct: 633 KKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVK------FNIAII 686

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +ID + K+ K + A EL  S++  GL+PN  TY + I  L  +  +++A ++F  ME 
Sbjct: 687 NTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEK 746

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G AP+  +   ++   + K E SK    L  +D + +   AS  S+++ L  +
Sbjct: 747 SGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSR 800



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNTV +N+II+ LCKEG V +A+++F  +      P+V+T+NSLI G+       +A  
Sbjct: 505 RPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFG 564

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+  G++ DVVT++ ++D  C+N ++D+   L   M+  GV+P        + YG 
Sbjct: 565 VLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKP------TTITYGI 618

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GL   G+   A+++   +  +G   ++ T  I +  LC +   D+A  LF  +    
Sbjct: 619 ILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMN 678

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V  N  I  T++ +  +  +  +  EL  S+    ++P AS   +++  L+K
Sbjct: 679 VKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLK 730



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 9/185 (4%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR- 107
           P V TYN L+   C A+       LF   +  GL++DV+  N+++  LC  ++ D+A   
Sbjct: 117 PTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNV 176

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR--AGLMPNVVTY 165
           LL  M + GV PD       ++Y  ++  LC+  + + A +L  ++ +   G  PNVV+Y
Sbjct: 177 LLHRMPELGVEPDT------ISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSY 230

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  IH    + ++ KA +LF +M  +GV P+ V +++ + +  +     K   +LR M  
Sbjct: 231 NTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMIS 290

Query: 226 RNVMP 230
               P
Sbjct: 291 NGFEP 295


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 131/239 (54%), Gaps = 6/239 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + + + V Y+TIID +CK+  V+ A +L+ +M    I+ N+VTY++LI GFC      
Sbjct: 203 GKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLK 262

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M    +  DV TFN+++D  CK  ++ EA   L +M++ G++PD      IV
Sbjct: 263 DAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPD------IV 316

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ +  +++  G+   V +YNI I+  C  + +D+A  LF +M
Sbjct: 317 TYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEM 376

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
             K + PN + + +L+    +    S  +EL+  M  R   P     S I+D L KN +
Sbjct: 377 HHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHL 435



 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 118/212 (55%), Gaps = 6/212 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           +YN +I+G CK   VD+A +LF +M  + I PNV+TYNSLI G C +   + A  L   M
Sbjct: 352 SYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLM 411

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            DRG Q D++T++ I+D LCKN  +D+A  LL  +   G+RP      N+  Y  LIDGL
Sbjct: 412 HDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRP------NMYTYTILIDGL 465

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G+L++AR + + L   G    V TY + I   C+    D+A  L   M+     P+ 
Sbjct: 466 CKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDA 525

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           + +  ++ S   K+E  K  +LLR M  R ++
Sbjct: 526 ITYEIIICSLFDKDENDKAEKLLREMITRGLL 557



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 41/261 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N ++D  CKEG V +AK     M  + I P++VTYNSL+ G+C  N+ N A+ +
Sbjct: 278 PDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSI 337

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  RG+ + V ++N++++  CK + +D+A +L   M    + P      N++ Y  L
Sbjct: 338 LNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFP------NVITYNSL 391

Query: 134 IDGLCKIGKLKNARELSQ-----------------------------------SLTRAGL 158
           IDGLCK G++  A EL                                      L   G+
Sbjct: 392 IDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGI 451

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            PN+ TY I I  LC   +++ A ++F D+ VKG       +T ++  F       + + 
Sbjct: 452 RPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALS 511

Query: 219 LLRSMDKRNVMPYASILSIIV 239
           LL  M   + +P A    II+
Sbjct: 512 LLSKMKDNSCIPDAITYEIII 532



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+T NT I G C +G + +A     ++     + + V+Y +LI+G C   +   A  
Sbjct: 137 EPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALE 196

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   +  + +Q DVV ++ I+D +CK++ +++A  L   M+   +        NIV Y  
Sbjct: 197 LLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISS------NIVTYSA 250

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C +GKLK+A  L   +T   + P+V T+NI + A C + ++ +A +    M  +G
Sbjct: 251 LISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQG 310

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + +LM  +   NE +    +L +M  R V       +I+++   K
Sbjct: 311 IKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCK 362



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 108/196 (55%), Gaps = 8/196 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN++IDGLCK G +  A EL   M D    P+++TY+S++   C  +  ++A  L
Sbjct: 383 PNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIAL 442

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
            I++ D+G++ ++ T+ +++D LCK  ++++A  +  DL+++G         + +  Y  
Sbjct: 443 LIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKG-------YNLTVNTYTV 495

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C  G    A  L   +     +P+ +TY I I +L + ++ DKA  L  +M  +G
Sbjct: 496 MIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRG 555

Query: 193 VAPNCVIFTTLMPSFI 208
           +  + + + +   SF+
Sbjct: 556 LLYSFLEYGSWSLSFM 571



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +  I+  L K         LF +M+   I PN V +N LI+ FC       A  +
Sbjct: 68  PPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSV 127

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  G + D +T N  +   C   ++ +A    D ++  G   D       V+YG L
Sbjct: 128 LAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQ------VSYGTL 181

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+G+ + A EL + +    +  +VV Y+  I ++C D+ ++ A DL+ +M  + +
Sbjct: 182 INGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRI 241

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + N V ++ L+  F    +    I L   M   N+ P     +I+VD   K
Sbjct: 242 SSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCK 292



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 6/153 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY++I+D LCK   VDKA  L +++KD+ I PN+ TY  LI G C      +A  
Sbjct: 417 QPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARN 476

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +++ +G    V T+ V++   C +   DEA  LL  M      PDA      + Y  
Sbjct: 477 IFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDA------ITYEI 530

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
           +I  L    +   A +L + +   GL+ + + Y
Sbjct: 531 IICSLFDKDENDKAEKLLREMITRGLLYSFLEY 563


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA- 70
           C P+ VT+N +I+ LC++G + +A ++  +M      PN ++YN L+HGFC     + A 
Sbjct: 295 CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAI 354

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           EYL I M+ RG   D+VT+N ++  LCK+ K+D A  +L+ +   G  P       ++ Y
Sbjct: 355 EYLDI-MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP------VLITY 407

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGL K+GK + A +L   + R GL P+++TY+  +  L  + ++D+A   F D+E 
Sbjct: 408 NTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEG 467

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ PN + + ++M    +  +T + I+ L  M  +   P  +  +I+++
Sbjct: 468 LGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 517



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYN +I+G+CKEG +D+A +    M      PNV+T+N ++   C      +AE 
Sbjct: 226 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 285

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ +G    VVTFN++++ LC+   +  A  +L+ M   G  P      N ++Y  
Sbjct: 286 LLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP------NSLSYNP 339

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G CK  K+  A E    +   G  P++VTYN  + ALC D ++D A ++   +  KG
Sbjct: 340 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 399

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
            +P  + + T++    +  +T + I+LL  M ++ + P    Y+S++S
Sbjct: 400 CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVS 447



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 117/217 (53%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNTI+  LC  G + +A E+  +   +   P+V+TY  LI   C  +   +A  L
Sbjct: 157 PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 216

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM ++G + DVVT+NV+++ +CK  ++DEA + L+ M      P   C+ N++ +  +
Sbjct: 217 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM------PSYGCQPNVITHNII 270

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  +C  G+  +A +L   + R G  P+VVT+NI I+ LC    + +A D+   M + G 
Sbjct: 271 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGC 330

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + +  L+  F ++ +  + IE L  M  R   P
Sbjct: 331 TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 367



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 125/240 (52%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +R+    C P+ +TY  +I+  CKE  V +A +L  +M+++   P+VVTYN LI+G C  
Sbjct: 183 DRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 242

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA      M   G Q +V+T N+I+  +C   +  +A +LL  M++ G  P     
Sbjct: 243 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSP----- 297

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++V +  LI+ LC+ G L  A ++ + +   G  PN ++YN  +H  C +++MD+A + 
Sbjct: 298 -SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 356

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M  +G  P+ V + TL+ +  +  +    +E+L  +  +   P     + ++D L K
Sbjct: 357 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 416



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 17/221 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +I G CK G +D A ++  +M   N+ P+VVTYN+++   C +    +A   
Sbjct: 125 PDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQA--- 178

Query: 74  FIEMMDRGLQS----DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            +E++DR LQ     DV+T+ ++++  CK   + +A +LLD M   G +PD      +V 
Sbjct: 179 -MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD------VVT 231

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI+G+CK G+L  A +   ++   G  PNV+T+NI + ++C+  +   A  L  DM 
Sbjct: 232 YNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML 291

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            KG +P+ V F  L+    R+    + I++L  M      P
Sbjct: 292 RKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 332



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 9/182 (4%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P+++   SLI GFC      +A ++   +   G   DV+T+NV++   CK+ ++D A ++
Sbjct: 90  PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV 149

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           LD M    V PD      +V Y  ++  LC  GKLK A E+     +    P+V+TY I 
Sbjct: 150 LDRM---NVAPD------VVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTIL 200

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I A C +  + +A  L  +M  KG  P+ V +  L+    ++    + I+ L +M     
Sbjct: 201 IEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGC 260

Query: 229 MP 230
            P
Sbjct: 261 QP 262



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 10/177 (5%)

Query: 69  EAEYLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           E  + F+E M+ RG   D++    ++   C+  K  +AT +++++ Q G  PD      +
Sbjct: 74  EDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD------V 127

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + Y  LI G CK G++ NA    Q L R  + P+VVTYN  +  LC+  ++ +A ++   
Sbjct: 128 ITYNVLISGYCKSGEIDNAL---QVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDR 184

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              K   P+ + +T L+ +  +++   + ++LL  M  +   P     +++++ + K
Sbjct: 185 QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 241



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 9/152 (5%)

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +  L +N ++++  + L+ M+  G  PD      I+    LI G C+IGK K A  + + 
Sbjct: 64  LRRLVRNGELEDGFKFLESMVYRGDIPD------IIPCTSLIRGFCRIGKTKKATWVMEI 117

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           L ++G +P+V+TYN+ I   C   ++D A  +   M    VAP+ V + T++ +     +
Sbjct: 118 LEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGK 174

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + +E+L    ++   P     +I+++   K
Sbjct: 175 LKQAMEVLDRQLQKECYPDVITYTILIEATCK 206



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 57/105 (54%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY++++ GL +EG VD+A + F  ++   I PN +TYNS++ G C +   + A  
Sbjct: 436 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 495

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
               M+ +  +    T+ ++++ +       EA  LL+ +   G+
Sbjct: 496 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 37/74 (50%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  +PN +TYN+I+ GLCK    D+A +    M  +   P   TY  LI G  Y     
Sbjct: 467 GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAK 526

Query: 69  EAEYLFIEMMDRGL 82
           EA  L  E+  RGL
Sbjct: 527 EALDLLNELCSRGL 540


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 130/239 (54%), Gaps = 7/239 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V Y+TIIDG+CK+  V+ A +L+ +M  + I+PNVVTY++LI GF       
Sbjct: 220 GKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLK 279

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M+   ++ DV TFN+++D  CK+ K+  A +L+D M   G  P      NIV
Sbjct: 280 DAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPP------NIV 333

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  ++D LCK  ++  A  L   L   G+ PN+ TY I I  LC   +++ A ++F D+
Sbjct: 334 TYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDL 393

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII-VDLLVKNE 246
            VKG     V +  +   F +K    +   LL  M++   +P A    +I + L  K E
Sbjct: 394 LVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGE 452



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N I+  L K         L  +M+   I PN+V  N LI+ FC       A  +
Sbjct: 85  PPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSV 144

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +++  G   + +TF  ++  LC   ++ +A    D ++  G       + N ++YG L
Sbjct: 145 FAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGF------QFNQISYGTL 198

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK+G+ + A +L + +    + PNVV Y+  I  +C D+ ++ A DL+ +M  KG+
Sbjct: 199 IDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGI 258

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +PN V ++ L+  F    +    ++L   M   N+ P     +I+VD+  K+
Sbjct: 259 SPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKS 310



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V  N +I+  C+ G +  A  +F ++     NPN +T+ +LI G C     ++A  
Sbjct: 119 KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALN 178

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +++  G Q + +++  ++D LCK  +   A  LL  +    V+P      N+V Y  
Sbjct: 179 FHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQP------NVVMYST 232

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG+CK   + +A +L   +   G+ PNVVTY+  I       ++  A DLF  M  + 
Sbjct: 233 IIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISEN 292

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + P+   F  L+  F +  + S  ++L+  M  R   P     S I+D L K  
Sbjct: 293 IKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTH 346



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 6/197 (3%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           N++ Y+S    F   ND ++A  LF  ++ +      + FN I+  L K++       L 
Sbjct: 51  NLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLS 110

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
             M   G++P      N+V    LI+  C++G +  A  +   + + G  PN +T+   I
Sbjct: 111 KKMEFRGIKP------NLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLI 164

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             LC   Q+ +A +    +   G   N + + TL+    +  ET   ++LLR +D + V 
Sbjct: 165 KGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQ 224

Query: 230 PYASILSIIVDLLVKNE 246
           P   + S I+D + K++
Sbjct: 225 PNVVMYSTIIDGMCKDK 241



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY  +IDGLC  G ++ A+ +F  +  +  +  VVTY  + +GFC     +EA  
Sbjct: 364 RPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASA 423

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           L  +M + G   D  T+ +I   L K  + D A +L
Sbjct: 424 LLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEKL 459


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTY ++IDG CKE  +DKA  +   M  +   PN+ T+N LI+G+C AN  ++   L
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M  RG+ +D VT+N ++   C+  K++ A  L   M+   VRPD      IV+Y  L
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD------IVSYKIL 463

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLC  G+ + A E+ + + ++ +  ++  YNI IH +CN  ++D A DLF  + +KGV
Sbjct: 464 LDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGV 523

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+   +  ++    +K   S+   L R M++    P     +I++
Sbjct: 524 KPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y+ IIDGLCK+G +D A  LF +M+ +    +++ Y +LI GFCYA   ++   
Sbjct: 244 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAK 303

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  DVV F+ ++D   K  K+ EA  L   MIQ G+ PD       V Y  
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT------VTYTS 357

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK  +L  A  +   +   G  PN+ T+NI I+  C    +D   +LF  M ++G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V  + V + TL+  F    +     EL + M  R V P      I++D L  N
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDN 470



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+N +I+G CK   +D   ELF +M    +  + VTYN+LI GFC       A+
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ R ++ D+V++ +++D LC N + ++A  + + + +  +      E++I  Y 
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM------ELDIGIYN 496

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C   K+ +A +L  SL   G+ P+V TYNI I  LC    + +A  LF  ME  
Sbjct: 497 IIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEED 556

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G +PN   +  L+ + + + + +K  +L+  + +      AS + ++VD+L
Sbjct: 557 GHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDML 607



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TVT++T+I+GLC EG V +A EL  +M +    P ++T N+L++G C     ++A  
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M++ G Q + VT+  ++  +CK+ +   A  LL  M +  ++ DA      V Y  
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDA------VKYSI 252

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK G L NA  L   +   G   +++ Y   I   C   + D    L  DM  + 
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F+ L+  F+++ +  +  EL + M +R + P     + ++D   K
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364



 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 122/245 (49%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  +T N +++GLC  G V  A  L  +M +    PN VTY  ++   C +     A  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M +R ++ D V +++I+D LCK+  +D A  L + M   G + D      I+ Y  
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD------IIIYTT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C  G+  +  +L + + +  + P+VV ++  I     + ++ +A +L  +M  +G
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           ++P+ V +T+L+  F ++N+  K   +L  M  +   P     +I+++   K  +  + +
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407

Query: 253 PQFNR 257
             F +
Sbjct: 408 ELFRK 412



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 6/224 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D A +LF +M      P ++ ++ L          +    L  +M  +G+  ++ T +++
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           ++  C+ RK+  A   +  +I+ G  PD       V +  LI+GLC  G++  A EL   
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDT------VTFSTLINGLCLEGRVSEALELVDR 167

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G  P ++T N  ++ LC + ++  A  L   M   G  PN V +  ++    +  +
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           T+  +ELLR M++R +   A   SII+D L K+    N+   FN
Sbjct: 228 TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 271



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYN +I GLCK+G + +A  LF +M+++  +PN  TYN LI       D  ++  
Sbjct: 524 KPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAK 583

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  E+   G   D  T  +++D L   R
Sbjct: 584 LIEEIKRCGFSVDASTVKMVVDMLSDGR 611


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P TV++NT+I+GLCK   +D+   L   M++  I P+V TY+ LIHG C     + AE 
Sbjct: 255 RPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQ 314

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  RGL+ + +TF  ++D  C++R++D A      M+  GV+PD      +V Y  
Sbjct: 315 LFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPD------LVMYNT 368

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLCK+G +  AR+L   +   G+ P+ +TY   I   C +  ++ A ++   M  +G
Sbjct: 369 LLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEG 428

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V  + V FT L+  F R          LR M +  + P  +  ++++D
Sbjct: 429 VVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVID 476



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 128/261 (49%), Gaps = 29/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I GLCKEG +D A++LF +M+   + PN +T+ +LI G C +   + A   
Sbjct: 291 PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNT 350

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
           + +M+  G++ D+V +N +++ LCK   +++A +L+D M   G++PD          +C+
Sbjct: 351 YHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCK 410

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                               ++ VA+  LI G C+ G++++A    + +  AG+ P+  T
Sbjct: 411 EGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDAT 470

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y + I   C    +     L  +M++ G  P  + +  LM    ++ +      LL +M 
Sbjct: 471 YTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAML 530

Query: 225 KRNVMPYASILSIIVDLLVKN 245
              V P     +I+++   KN
Sbjct: 531 NLGVTPDDITYNILLEGHCKN 551



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YNT+++GLCK G V+KA++L  +M+   + P+ +TY +LI G+C   D   A  
Sbjct: 360 KPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAME 419

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G+  D V F  ++   C++ ++ +A R L  M++ G++PD         Y  
Sbjct: 420 IRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDD------ATYTM 473

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK G +K   +L + +   G  P V+TYN+ ++ LC   QM  A+ L   M   G
Sbjct: 474 VIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLG 533

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V P+ + +  L+    +  +   +++L    +K  ++ YA   S++ +
Sbjct: 534 VTPDDITYNILLEGHCKNGKAEDLLKLRN--EKGLIVDYAYYTSLVSE 579



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 106/195 (54%), Gaps = 9/195 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+IDG CKEG ++ A E+   M +E +  + V + +LI GFC      +AE 
Sbjct: 395 KPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAER 454

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM++ G++ D  T+ +++D  CK   +    +LL  M   G +P       ++ Y  
Sbjct: 455 TLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKP------GVITYNV 508

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLCK G++KNA  L +++   G+ P+ +TYNI +   C +    KA DL      KG
Sbjct: 509 LMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKN---GKAEDLLKLRNEKG 565

Query: 193 VAPNCVIFTTLMPSF 207
           +  +   +T+L+  +
Sbjct: 566 LIVDYAYYTSLVSEY 580



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 6/212 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           ++ ++      GFV  A + F  +++ N          L+     +N        + E++
Sbjct: 156 FDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEIL 215

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           + G    V  +N+++++ CK   + +A  + + + + G+RP        V++  LI+GLC
Sbjct: 216 EYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRP------TTVSFNTLINGLC 269

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K   L     L +++    + P+V TY++ IH LC + ++D A  LF +M+ +G+ PN +
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            FT L+    R       +     M    V P
Sbjct: 330 TFTALIDGQCRSRRIDSAMNTYHQMLTMGVKP 361


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 131/230 (56%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA- 70
           C P+ VT+N +I+ LC++  + +A ++  +M      PN ++YN L+HGFC     + A 
Sbjct: 344 CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAI 403

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           EYL I M+ RG   D+VT+N ++  LCK+ K+D A  +L+ +   G  P       ++ Y
Sbjct: 404 EYLEI-MVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSP------VLITY 456

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGL K+GK + A EL + + R GL P+++TY+  +  L  + ++D+A  +F DME 
Sbjct: 457 NTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEG 516

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             + P+ V +  +M    +  +TS+ I+ L  M ++   P  +  +I+++
Sbjct: 517 LSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIE 566



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ VTYN +I+G+CKEG +D+A +    M      PNV+T+N ++   C      +AE
Sbjct: 274 CKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAE 333

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G    VVTFN++++ LC+ R +  A  +L+ M + G  P      N ++Y 
Sbjct: 334 RLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVP------NSLSYN 387

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G C+  K+  A E  + +   G  P++VTYN  + ALC D ++D A ++   +  K
Sbjct: 388 PLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSK 447

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           G +P  + + T++    +  +T   +ELL  M ++ + P    Y+++L
Sbjct: 448 GCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLL 495



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNTI+  LC  G + +A E+  +       P+V+TY  LI   C  +   +A  L
Sbjct: 206 PDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKL 265

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G + DVVT+NV+++ +CK  ++DEA + L+ M      P   C+ N++ +  +
Sbjct: 266 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM------PSYGCKPNVITHNII 319

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  +C  G+  +A  L   + R G  P+VVT+NI I+ LC    + +A D+   M   G 
Sbjct: 320 LRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGC 379

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + +  L+  F ++ +  + IE L  M  R   P
Sbjct: 380 VPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYP 416



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 124/240 (51%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +R+    C P+ +TY  +I+  C +  V +A +L  +M+ +   P+VVTYN LI+G C  
Sbjct: 232 DRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 291

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA      M   G + +V+T N+I+  +C   +  +A RLL  M++ G  P     
Sbjct: 292 GRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSP----- 346

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++V +  LI+ LC+   L  A ++ + + + G +PN ++YN  +H  C +++MD+A + 
Sbjct: 347 -SVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEY 405

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M  +G  P+ V + TL+ +  +  +    +E+L  +  +   P     + ++D L K
Sbjct: 406 LEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTK 465



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 117/235 (49%), Gaps = 11/235 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +   ++I G C+ G   KA  +   +++    P+V+TYN LI G+C + + ++A   
Sbjct: 139 PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKA--- 195

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +E+++R  +  DVVT+N I+  LC + K+ EA  +LD  +Q    PD      ++ Y  
Sbjct: 196 -LEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPD------VITYTI 248

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+  C    +  A +L   + + G  P+VVTYN+ I+ +C + ++D+A     +M   G
Sbjct: 249 LIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG 308

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
             PN +    ++ S            LL  M ++   P     +I+++ L +  +
Sbjct: 309 CKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRL 363



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 15/228 (6%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           NG+R F           N  +  L + G +++  +   +M  +   P+V+   SLI GFC
Sbjct: 99  NGSRSF------EEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFC 152

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
            +    +A  +   + + G   DV+T+NV++   CK+ ++D+A  +L+ M    V PD  
Sbjct: 153 RSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPD-- 207

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
               +V Y  ++  LC  GKLK A E+     +    P+V+TY I I A CND  + +A 
Sbjct: 208 ----VVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAM 263

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            L  +M  KG  P+ V +  L+    ++    + I+ L +M      P
Sbjct: 264 KLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKP 311



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT++  LCK+G VD A E+  Q+  +  +P ++TYN++I G         A 
Sbjct: 414 CYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAV 473

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +GL+ D++T++ ++  L +  K+DEA ++   M    ++P A      V Y 
Sbjct: 474 ELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSA------VTYN 527

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            ++ GLCK  +   A +    +   G  P   TY I I  + +
Sbjct: 528 AIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGIAD 570



 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           G+  KP+ VTYN I+ GLCK     +A +    M ++   P   TY  LI G 
Sbjct: 516 GLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 134/237 (56%), Gaps = 6/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   KP+ V YNTII+ LCK   +  A +++ +M  + I+P+VVTY +LIHGFC      
Sbjct: 190 GHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLK 249

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM  + +  +V TFN+++D L K  KM EA  LL +M++  ++PD F      
Sbjct: 250 EAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVF------ 303

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LIDG   + ++K+A+ +  S+ + G+ P+V  Y   I+ LC  + +D+A  LF +M
Sbjct: 304 TYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEM 363

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + K + P+ V + +L+    + +   + I L + M ++ + P     +I++D L K+
Sbjct: 364 KHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKS 420



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYN++IDG      V  AK +F  M    + P+V  Y ++I+G C     +EA  
Sbjct: 299 KPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMS 358

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  + +  D+VT+N ++D LCKN  ++ A  L   M + G++PD +      +Y  
Sbjct: 359 LFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVY------SYTI 412

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGLCK G+L++A+E+ Q L   G   NV  Y + I+ LC     D+A DL   ME KG
Sbjct: 413 LLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKG 472

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P+ V F  ++ +   K+E  K  ++LR M  R ++
Sbjct: 473 CMPDAVTFDIIIRALFEKDENDKAEKILREMIARGLL 509



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N +ID L KEG + +AK L   M    I P+V TYNSLI G+   ++   A+Y+
Sbjct: 265 PNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYV 324

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  RG+  DV  +  +++ LCK + +DEA  L + M    + PD      IV Y  L
Sbjct: 325 FYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPD------IVTYNSL 378

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK   L+ A  L + +   G+ P+V +Y I +  LC   +++ A ++F  +  KG 
Sbjct: 379 IDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGY 438

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             N   +T L+    +     + ++L   M+ +  MP A    II+  L + +
Sbjct: 439 HLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKD 491



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T  +N I+  L           LF Q +   I P++ T + LI+ FC+      A  +
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  ++ RG   + +T N ++  LC   ++ +A    D ++  G + D       V+YG L
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQ------VSYGTL 168

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK G+ K    L + L    + P+VV YN  I++LC ++ +  A D++ +M VKG+
Sbjct: 169 INGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGI 228

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+ V +TTL+  F       +   LL  M  +N+ P     +I++D L K
Sbjct: 229 SPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSK 279



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 120/245 (48%), Gaps = 6/245 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V+Y T+I+GLCK G       L  +++  ++ P+VV YN++I+  C      +A  ++
Sbjct: 161 DQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVY 220

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +G+  DVVT+  ++   C    + EA  LL+ M    + P      N+  +  LI
Sbjct: 221 SEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINP------NVCTFNILI 274

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D L K GK+K A+ L   + +A + P+V TYN  I      +++  A  +F  M  +GV 
Sbjct: 275 DALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVT 334

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
           P+   +T ++    +     + + L   M  +N++P     + ++D L KN     +I  
Sbjct: 335 PDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIAL 394

Query: 255 FNRQK 259
             R K
Sbjct: 395 CKRMK 399



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 6/159 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           FN I+  L  N+       L       G+ PD  C ++I     LI+  C    +  A  
Sbjct: 60  FNNILSSLVNNKHYPTVISLFKQFEPNGITPD-LCTLSI-----LINCFCHQAHITLAFS 113

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           +  ++ + G  PN +T N  I  LC   ++ KA      +  +G   + V + TL+    
Sbjct: 114 VFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLC 173

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +  ET  V  LLR ++  +V P   + + I++ L KN++
Sbjct: 174 KTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKL 212


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 131/244 (53%), Gaps = 8/244 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           NG  E G++  P+ VTYN +IDG CK+G    A E+   M+  N +PN  TYN LI GFC
Sbjct: 368 NGMLEKGLI--PSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFC 425

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
              + ++A  L  +M++R LQ +VVT+N+++   CK   +  A +LL LM + G+ PD +
Sbjct: 426 RGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEW 485

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                  Y   ID LCK G ++ AR L +SL   G+  N V Y+  I   C   ++    
Sbjct: 486 ------TYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGR 539

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            L   M   G  PN + + +L+  + ++    +   L+  M KR++ P A   +I++D L
Sbjct: 540 FLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNL 599

Query: 243 VKNE 246
           +K++
Sbjct: 600 LKDD 603



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N V+Y  +I G C+   VD+A +LF QM ++N  P V TY  +I   C      EA 
Sbjct: 270 CLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEAL 329

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM ++  Q +V T+ V++  LC++   D+A ++L+ M++ G+ P      ++V Y 
Sbjct: 330 NMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIP------SVVTYN 383

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK G   +A E+   +      PN  TYN  I   C  + + KA  L   M  +
Sbjct: 384 ALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLER 443

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + PN V +  L+    ++ +     +LL  M++  ++P     S+ +D L K
Sbjct: 444 KLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCK 496



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 8/236 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  P+  TY+  ID LCK G V++A+ LF  +K++ I  N V Y++LI G+C    
Sbjct: 477 ESGLV--PDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGK 534

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++  +L  +M+  G   + +T+N ++D  CK +   EA  L+D+MI+  + P A     
Sbjct: 535 VSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAA----- 589

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y  LID L K  +   A ++   +   G  P+V  Y   IHA C+  ++  A  L  
Sbjct: 590 -DTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLIC 648

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            M  KG+ P+ +++T  + ++ R         +L+ M +    P     S ++  L
Sbjct: 649 KMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHL 704



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T TY ++I G C+   VD A  +FL M ++    N V+Y +LIHGFC A   +EA  LF
Sbjct: 238 DTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLF 297

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M +      V T+ VI+  LC+  +  EA  +   M +        C+ N+  Y  LI
Sbjct: 298 SQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTE------KHCQPNVHTYTVLI 351

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC+     +A+++   +   GL+P+VVTYN  I   C       A ++   ME    +
Sbjct: 352 CSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCS 411

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           PN   +  L+  F R     K + LL  M +R + P     +I++
Sbjct: 412 PNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILI 456



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 6/219 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T NT+++G CK G V +A+    ++    ++ +  TY SLI G+C   + + A  +
Sbjct: 202 PNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAI 261

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+ M ++G   + V++  ++   C+ R++DEA +L   M +    P       +  Y  +
Sbjct: 262 FLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWP------TVRTYTVI 315

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LC++G+   A  + + +T     PNV TY + I +LC D   D A  +   M  KG+
Sbjct: 316 IFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGL 375

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
            P+ V +  L+  + +K  ++  +E+L  M+  N  P A
Sbjct: 376 IPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNA 414



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 8/199 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  K N V Y+T+IDG CK G V   + L  +M      PN +TYNSLI G+C   
Sbjct: 511 KEKGI--KANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEK 568

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           +  EA  L   M+ R ++    T+ +++D L K+ + D+A  + D M+  G  PD F   
Sbjct: 569 NFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVF--- 625

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y   I   C  G+LK+A  L   +   G+MP+ + Y + I A      +D A  + 
Sbjct: 626 ---IYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGIL 682

Query: 186 LDMEVKGVAPNCVIFTTLM 204
             M   G  P+   ++ L+
Sbjct: 683 KRMHEVGCEPSYYTYSCLI 701



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 35/248 (14%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P   TY  +ID L K+   D+A ++F QM     +P+V  Y + IH +C      +AE 
Sbjct: 586 EPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEV 645

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M  +G+  D + + + +D   +   +D A  +L  M + G      CE +   Y C
Sbjct: 646 LICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVG------CEPSYYTYSC 699

Query: 133 LIDGLCK----------------IGKLKN-------------ARELSQSLTRAGLMPNVV 163
           LI  L                   G   N               +L   +   G  PN  
Sbjct: 700 LIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNAN 759

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   I  LC    ++ AH LF  M+ KG +PN  I+ +L+    +     + I  L  M
Sbjct: 760 TYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIM 819

Query: 224 DKRNVMPY 231
            +   +P+
Sbjct: 820 IENRHLPH 827



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 6/151 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           +N+++  L +   +DE   +   M+   V P      NI     +++G CK+G +  A  
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTP------NIFTLNTMVNGYCKLGNVVEAEL 225

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
               + +AGL  +  TY   I   C ++ +D A+ +FL M  KG   N V +T L+  F 
Sbjct: 226 YVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFC 285

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIV 239
                 + ++L   M + N  P     ++I+
Sbjct: 286 EARRVDEALKLFSQMHEDNCWPTVRTYTVII 316



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA- 70
           C PN  TY   I GLCK G ++ A  LF  MK++  +PN   YNSL+   C      EA 
Sbjct: 754 CAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAI 813

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI--V 128
            +L I + +R L   + +  +++  L      ++A R+    +Q        CE N   +
Sbjct: 814 RWLDIMIENRHL-PHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQ--------CEYNYDEM 864

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
            +  LIDGL K G      +L   +   G   +  TY++ I      +++D
Sbjct: 865 VWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGFDGIQEID 915



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 6/171 (3%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           +LF +M +    PN  TY   I G C       A  LF  M ++G   +   +N ++   
Sbjct: 744 DLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCS 803

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C+     EA R LD+MI+    P      ++ +   L+ GL   G  + A+ +  S  + 
Sbjct: 804 CQLGLYGEAIRWLDIMIENRHLP------HLDSCKLLLCGLYDEGNDEKAKRVFCSFLQC 857

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
               + + + + I  L      DK  DLF  ME +G   +   ++ L+  F
Sbjct: 858 EYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + N V Y+T+ID LCK    D A  LF +M+++ + PNV+TY+SLI   C     ++A  
Sbjct: 250 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASR 309

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  ++VTF+ ++D   K  K+ +A +L + MI+  + P      NI  Y  
Sbjct: 310 LLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDP------NIFTYSS 363

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C + +L  A+++ + + R   +PNVVTYN  I+  C  +++DK  +LF +M  +G
Sbjct: 364 LINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRG 423

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V +TTL+  F +  +      + + M    V P     +I++D L KN
Sbjct: 424 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 476



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT N++++G C    +  A  L  QM +    P+ VT+ +LIHG    N  +EA  
Sbjct: 145 EPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVA 204

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ RG Q D+VT+  +++ LCK    D A  LL+ M    +      E N+V Y  
Sbjct: 205 LIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKI------EANVVIYST 258

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK     +A  L   +   G+ PNV+TY+  I  LCN  +   A  L  DM  + 
Sbjct: 259 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERK 318

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + PN V F+ L+ +F++K +  K  +L   M KR++ P    Y+S++
Sbjct: 319 INPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLI 365



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN +I+  C+   +  A  L  +M      P++VT NSL++GFC+ N  ++A  L 
Sbjct: 112 NLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALV 171

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M++ G + D VTF  ++  L  + K  EA  L+D M+Q G +PD      +V YG ++
Sbjct: 172 DQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPD------LVTYGAVV 225

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G    A  L   +  A +  NVV Y+  I +LC     D A +LF +ME KGV 
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 285

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           PN + +++L+         S    LL  M +R + P     S ++D  VK
Sbjct: 286 PNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVK 335



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 6/133 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I+G CK   VDK  ELF +M    +  N VTY +LIHGF  A D + A+
Sbjct: 389 CLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 448

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  +++T+N+++D LCKN K+ +A  + + + +  + PD      I  Y 
Sbjct: 449 MVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD------IYTYN 502

Query: 132 CLIDGLCKIGKLK 144
            +I+G+CK GK K
Sbjct: 503 IMIEGMCKAGKWK 515


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNTVTYNTII  LCKE  V++A +L L +  + I P+V TYNSLI G C + +   A 
Sbjct: 367 CSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAM 426

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+ EM  +G   D  T+N+++D LC   K+ EA  LL  M   G      C  N++ Y 
Sbjct: 427 ELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSG------CARNVITYN 480

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK  ++  A E+   +   G+  N VTYN  I  LC  E++++A  L   M ++
Sbjct: 481 TLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIME 540

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P+   + +L+  F +  +  K  +++++M      P
Sbjct: 541 GLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEP 579



 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYN +ID LC  G + +A  L  +M+      NV+TYN+LI GFC      EAE
Sbjct: 437 CHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAE 496

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M  +G+  + VT+N ++D LCK+ +++EA++L+D MI  G+RPD F       Y 
Sbjct: 497 EIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKF------TYN 550

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   CK G +K A ++ Q++   G  P++VTY   I  LC   +++ A  L   +++K
Sbjct: 551 SLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMK 610

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+      +  ++ +  R+  + + + L R M ++   P A    I+
Sbjct: 611 GINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIV 657



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N +++GL K G V  A E+   M  E  +P++ TYNSLI G C   + +EA  +
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++R    + VT+N I+  LCK  +++EAT+L  ++   G+ PD      +  Y  L
Sbjct: 359 LNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPD------VCTYNSL 412

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC       A EL + +   G  P+  TYN+ I +LC   ++ +A +L  +MEV G 
Sbjct: 413 IQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGC 472

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           A N + + TL+  F +    ++  E+   M+ + V   +   + ++D L K+E
Sbjct: 473 ARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSE 525



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 117/266 (43%), Gaps = 42/266 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---------- 62
           +P+  T+N +I  LC+   +  A  L  +M+D  + P+  T+ +++ GF           
Sbjct: 192 RPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMR 251

Query: 63  -----------------------YANDGNEAEYL-FIEMMD--RGLQSDVVTFNVIMDEL 96
                                  +  +G   E L FIE M    G   D  TFN++++ L
Sbjct: 252 VKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGL 311

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            K   +  A  ++D+M++ G  PD      I  Y  LI GLCK+G++  A ++   +   
Sbjct: 312 SKTGHVKHALEVMDMMLREGFDPD------IYTYNSLISGLCKLGEVDEAVKVLNQMIER 365

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
              PN VTYN  I  LC + Q+++A  L L +  KG+ P+   + +L+         +  
Sbjct: 366 DCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVA 425

Query: 217 IELLRSMDKRNVMPYASILSIIVDLL 242
           +EL + M  +   P     ++++D L
Sbjct: 426 MELYKEMKTKGCHPDEFTYNMLIDSL 451



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 8/135 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           C+P+ VTY T+I GLCK G V+ A +L   +QMK  N+ P+   YN +I          E
Sbjct: 577 CEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHA--YNPVIQALFRRKRSKE 634

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           A  LF EM+++    D VT+ ++   LC+    + EA   +  M++ G  P+ F    ++
Sbjct: 635 AVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPE-FSSFYML 693

Query: 129 AYGCLIDGLCKIGKL 143
           A G     L  +G L
Sbjct: 694 AEGLF--SLAMVGTL 706



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 116/298 (38%), Gaps = 66/298 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMK----------------------------- 43
           KP++  +  ++  L K G  D  K++  +MK                             
Sbjct: 86  KPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEILQ 145

Query: 44  -------DENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                  +  +  N   YN L++     N     E     M+ RG++ DV TFN+++  L
Sbjct: 146 FVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKAL 205

Query: 97  CKNRKMDEATRLLDLMIQGGVRPD--AFCEI------------------NIVAYGC---- 132
           C+  ++  A  L++ M   G+ PD   F  I                   +V  GC    
Sbjct: 206 CRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTN 265

Query: 133 -----LIDGLCKIGKLKNARELSQSLT-RAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
                L++G CK G+++ A    + ++ R G  P+  T+N+ ++ L     +  A ++  
Sbjct: 266 VTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMD 325

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            M  +G  P+   + +L+    +  E  + +++L  M +R+  P     + I+  L K
Sbjct: 326 MMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCK 383


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 126/243 (51%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y+T++DGLCK+G V +A  L L+M  + I PN+VTY  LI G C      EA  L
Sbjct: 214 PNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSL 273

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EMM  G+  D+ + N+++D LCK  K+ +A  ++  MI  G  PD F       Y  L
Sbjct: 274 LDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVF------TYNSL 327

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  C   ++  A  + + +   G +P++V Y   IH  C  + ++KA  L  +M   G 
Sbjct: 328 IDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGF 387

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V +TTL+  F +        EL  +M K   +P     +II+D L K+++   ++ 
Sbjct: 388 TPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALS 447

Query: 254 QFN 256
            F+
Sbjct: 448 LFH 450



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y ++I G CK   ++KA  L  +M      P+VVT+ +LI GFC       A+
Sbjct: 352 CLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAK 411

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF+ M   G   ++ T  +I+D LCK++ + EA  L   M +  +      ++NIV Y 
Sbjct: 412 ELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNL------DLNIVIYS 465

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DG+C  GKL  A EL   L   GL  NV  Y I I+       +DKA DL  +ME  
Sbjct: 466 IILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEEN 525

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  P+   +   +   + + E ++ I+ L  M  +     A+   +I++ L  N+
Sbjct: 526 GCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTEMIINYLSTNQ 580



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+  +I+GLC +G V +A EL   ++      +V TY  LI+G C     +EA  
Sbjct: 143 EPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVG 202

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +M +R    +VV ++ +MD LCK+  + EA  L   M   G++P      N+V Y C
Sbjct: 203 WLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKP------NLVTYTC 256

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  G+ K A  L   + + G+MP++ + NI +  LC + ++ +A  +   M + G
Sbjct: 257 LIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVG 316

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             P+   + +L+  +  +N+  +   +   M  R  +P
Sbjct: 317 EVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLP 354



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEAEY 72
           P+ + +  ++  + K      A  L  +M     I P+    N +I+  C+         
Sbjct: 73  PSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGFS 132

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+  GL+  VVTF ++++ LC    +  A  L+D + + G R D      +  YG 
Sbjct: 133 VLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSD------VKTYGV 186

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK+GK   A    + +      PNVV Y+  +  LC D  + +A  L L+M  KG
Sbjct: 187 LINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKG 246

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN V +T L+          +   LL  M K  VMP    L+I+VD+L K
Sbjct: 247 IKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCK 298


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y+ IIDGLCK+G    +  LF++M+D+ I PN+VTYN +I GFC +   + A+ 
Sbjct: 250 KPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQR 309

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM++R +  +VVT+N +++   K  K  EA  L D M+  G+ P      N + Y  
Sbjct: 310 LLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIP------NTITYNS 363

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK  +L  A ++   +   G  P+V T+   I   C  +++D   +L  +M  +G
Sbjct: 364 MIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRG 423

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V + TL+  F    + +  ++L + M    V P     + ++D L  N
Sbjct: 424 LVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN 476



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  T+ T+IDG C    +D   EL  +M    +  N VTYN+LIHGFC   D N A 
Sbjct: 389 CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAAL 448

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-----CEIN 126
            L  +M+  G+  D+VT N ++D LC N K+ +A  +   M +  +  DA       E +
Sbjct: 449 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPD 508

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           ++ Y  LI GL   GK   A EL + +   G++P+ +TY+  I  LC   ++D+A  +F+
Sbjct: 509 VLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFV 568

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
            M  K  +PN V F TL+  + +       +EL   M +R ++  A I
Sbjct: 569 SMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAII 616



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 129/228 (56%), Gaps = 17/228 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT+TYN++IDG CK+  +D A+++F  M  +  +P+V T+ +LI G+C A   ++   L
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RGL ++ VT+N ++   C    ++ A  L   MI  GV PD      IV    L
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD------IVTCNTL 469

Query: 134 IDGLCKIGKLKNARELSQSLTRA-----------GLMPNVVTYNITIHALCNDEQMDKAH 182
           +DGLC  GKLK+A E+ +++ ++           G+ P+V+TYNI I  L N+ +  +A 
Sbjct: 470 LDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAE 529

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +L+ +M  +G+ P+ + +++++    +++   +  ++  SM  ++  P
Sbjct: 530 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSP 577



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 127/258 (49%), Gaps = 42/258 (16%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEG--------------------------FVD-------- 33
           F  +C+P+ +T+ T+++GLC+EG                          FVD        
Sbjct: 174 FHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDT 233

Query: 34  -KAKELFLQMKD-ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
             A  L  +M++  +I PNVV Y+++I G C     +++  LFIEM D+G+  ++VT+N 
Sbjct: 234 VSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNC 293

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++   C + +   A RLL  M++  + P      N+V Y  LI+   K GK   A EL  
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISP------NVVTYNALINAFVKEGKFFEAAELYD 347

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G++PN +TYN  I   C  +++D A D+F  M  KG +P+   FTTL+  +    
Sbjct: 348 EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAK 407

Query: 212 ETSKVIELLRSMDKRNVM 229
                +ELL  M +R ++
Sbjct: 408 RIDDGMELLHEMPRRGLV 425



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 11/234 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+ T++ GLC +  V +A +LF Q+      P+V+T+ +L++G C      EA  L
Sbjct: 149 PDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVAL 204

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGC 132
              M++ GLQ D +T+   +D +CK      A  LL  M +   ++P      N+V Y  
Sbjct: 205 LDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKP------NVVIYSA 258

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK G+  ++  L   +   G+ PN+VTYN  I   C   +   A  L  +M  + 
Sbjct: 259 IIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERK 318

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++PN V +  L+ +F+++ +  +  EL   M  R ++P     + ++D   K +
Sbjct: 319 ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 18/224 (8%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIH 59
           VC P+ VT NT++DGLC  G +  A E+F  M+              + P+V+TYN LI 
Sbjct: 459 VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILIC 517

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G        EAE L+ EM  RG+  D +T++ ++D LCK  ++DEAT++   M      P
Sbjct: 518 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSP 577

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                 N+V +  LI+G CK G++ +  EL   + R G++ + + Y   I+       ++
Sbjct: 578 ------NVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNIN 631

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            A D+F +M   GV P+ +    ++  F  K E  + + +L  +
Sbjct: 632 GALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 38/263 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +N ++  + +    D    L+ +M+ + I  ++ ++  LI  FC  +    A   
Sbjct: 79  PSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 138

Query: 74  FIEMMDRGLQSDVV-------------------------------TFNVIMDELCKNRKM 102
           F ++   GL  DVV                               TF  +M+ LC+  ++
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRV 198

Query: 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPN 161
            EA  LLD M++ G++PD       + YG  +DG+CK+G   +A  L + +   + + PN
Sbjct: 199 VEAVALLDRMVENGLQPDQ------ITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPN 252

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VV Y+  I  LC D +   +H+LF++M+ KG+ PN V +  ++  F      S    LL+
Sbjct: 253 VVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQ 312

Query: 222 SMDKRNVMPYASILSIIVDLLVK 244
            M +R + P     + +++  VK
Sbjct: 313 EMLERKISPNVVTYNALINAFVK 335



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 10/172 (5%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M+       V+ FN +M  + +  + D    L   M +  +R D      I ++  
Sbjct: 68  LFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCD------IYSFTI 121

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C   KL  A      LT+ GL P+VVT+   +H LC D ++ +A DLF  +    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---- 177

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+ + FTTLM    R+    + + LL  M +  + P        VD + K
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCK 229


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 136/253 (53%), Gaps = 8/253 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  RE GV  +P+ VTY+T+I  LC+ G +D A E F QM D+ + P++ TY+ LI GFC
Sbjct: 415 NEMREQGV--EPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFC 472

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
              D  +A+ L ++MM++G++ D+  FN I++ LCK  ++ +A  + D  I  G+ P   
Sbjct: 473 THGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHP--- 529

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N++ Y  L+DG C +GK++NA  +   +  AG+ PNVV Y   ++  C   ++D+  
Sbjct: 530 ---NVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGL 586

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF ++  KG+ P+  ++  ++    +   T         M +  +       SI++  L
Sbjct: 587 SLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGL 646

Query: 243 VKNEISLNSIPQF 255
            KN  S  +I  F
Sbjct: 647 FKNSCSDEAILLF 659



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 6/251 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G VC PN V YNT+IDG  KEG V+KA +LF +M    I+P++ TYN +++  C A  
Sbjct: 207 EGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARA 266

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++AE +  +M+D+G+  D  T+N ++       +  EA R+   M   G+ PD      
Sbjct: 267 MDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPD------ 320

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V    L+  LCK GK+K+AR++  S+   G   ++ +Y I ++       +    +LF 
Sbjct: 321 VVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFN 380

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M   G+AP+  IF  L+ ++ +     +   +   M ++ V P     S ++  L +  
Sbjct: 381 LMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIG 440

Query: 247 ISLNSIPQFNR 257
              +++ +FN+
Sbjct: 441 KMDDAVEKFNQ 451



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 129/247 (52%), Gaps = 11/247 (4%)

Query: 1   MANGNREFGVVC----KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS 56
           M N  R F V+     +PN V Y T+++G CK G +D+   LF ++  + I P+   YN 
Sbjct: 547 MENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNI 606

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           ++HG   A     A+  F EM + G+  D  T+++++  L KN   DEA  L   +    
Sbjct: 607 ILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMN 666

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           V+      I+I     +I G+ +I +++ A++L  S++R+GL+P+VVTY+I +  L  + 
Sbjct: 667 VK------IDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEG 720

Query: 177 QMDKAHDLFLDMEVKGV-APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            +++A D+F  ME  G   PN  +   ++   + K E  +    L  +D+R+     S  
Sbjct: 721 LVEEADDMFSSMENAGCEQPNSQLLNHVVRELLEKREIVRAGTYLSKIDERSFSLDHSTT 780

Query: 236 SIIVDLL 242
           ++++DL 
Sbjct: 781 TLLIDLF 787



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)

Query: 2   ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           A+G R    V  P   TY  ++D   +          F Q+    +  + +  ++L+ G 
Sbjct: 98  AHGPR----VLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGL 153

Query: 62  CYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           C A    EA + L   M   G   DV ++ +++  LC +RK  +A  LL +M +GG    
Sbjct: 154 CEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGG---- 209

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A C  N VAY  +IDG  K G +  A +L   + + G+ P++ TYN  ++ALC    MDK
Sbjct: 210 AVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDK 269

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  +   M  KGV P+   + +L+  +    +  + + + + M  + ++P    L+ ++ 
Sbjct: 270 AEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMA 329

Query: 241 LLVKN 245
            L K+
Sbjct: 330 SLCKH 334



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 127/273 (46%), Gaps = 29/273 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  +Y  +++G   +G +    ELF  M  + I P+   +N LI  +      + A  
Sbjct: 353 KTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATI 412

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
           +F EM ++G++ DVVT++ ++  LC+  KMD+A    + MI  GV P           FC
Sbjct: 413 IFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFC 472

Query: 124 --------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                 +I  +  +I+ LCK+G++ +A+ +       GL PNV+
Sbjct: 473 THGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVM 532

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            YN  +   C   +M+ A  +F  M   G+ PN V++ TL+  + +     + + L R +
Sbjct: 533 VYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREI 592

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
             + + P  ++ +II+  L +   ++ +  +F+
Sbjct: 593 LHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFH 625



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 97/209 (46%), Gaps = 7/209 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+T  YN I+ GL + G    AK  F +M +  I  +  TY+ ++ G    +  +EA  
Sbjct: 598 KPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAIL 657

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF E+    ++ D+ T N+++  + + R+++EA  L   + + G+ P      ++V Y  
Sbjct: 658 LFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVP------SVVTYSI 711

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           ++  L K G ++ A ++  S+  AG   PN    N  +  L    ++ +A      ++ +
Sbjct: 712 MMTNLIKEGLVEEADDMFSSMENAGCEQPNSQLLNHVVRELLEKREIVRAGTYLSKIDER 771

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELL 220
             + +    T L+  F  K    + I  L
Sbjct: 772 SFSLDHSTTTLLIDLFSSKGTCREHIRFL 800


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 137/251 (54%), Gaps = 9/251 (3%)

Query: 14  PNTVTYNTIIDGL---CKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           P+ VTYNT+I GL   CK G  D+AKE+F +MK + + PNV++Y+SL+HGFC A    E+
Sbjct: 158 PDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEES 217

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + LF EM+D+G+Q ++V FNV++D LCK  K+ + +    L +     P   CE N ++Y
Sbjct: 218 KRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLS---MPSKGCEHNEISY 274

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI+G CKI K++ A  L   + + G  PNV TY+  +  L    ++  A+ LF  M+ 
Sbjct: 275 TILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKA 334

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN---EI 247
            G++ +  I+   +    +     + +EL   +   N        S ++D L K    EI
Sbjct: 335 SGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEI 394

Query: 248 SLNSIPQFNRQ 258
           +     Q +++
Sbjct: 395 AWEFFKQLSQE 405



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 127/249 (51%), Gaps = 35/249 (14%)

Query: 13  KPNTVTYNTIIDGLCKEGFV---DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           +PN V +N +ID LCKEG +     A++LFL M  +    N ++Y  LI+G+C      E
Sbjct: 230 QPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEE 289

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA-------- 121
           A  L+ EM   G + +V T++ ++  L +  K+ +A +L  +M   G+  D+        
Sbjct: 290 AMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLD 349

Query: 122 -FCE--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
             C+                    ++  +Y  LIDGLCK GK++ A E  + L++ GL P
Sbjct: 350 GLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQP 409

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEV---KGVAPNCVIFTTLMPSFIRKNETSKVI 217
           NVVT NI IH  C  EQ+DKA+ LF  ME     G  P+ + + TL+  F   N+  +V+
Sbjct: 410 NVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVV 469

Query: 218 ELLRSMDKR 226
            LL  M KR
Sbjct: 470 NLLHKMFKR 478



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 12/252 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI---HGFCYANDGNEA 70
           P+  T N + + LC    V +       +      P++VTYN+LI   +G C     +EA
Sbjct: 123 PDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEA 182

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + +F EM  +G+  +V++++ ++   C   K++E+ RL + M+  GV+P      N+V +
Sbjct: 183 KEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQP------NLVQF 236

Query: 131 GCLIDGLCK---IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             LID LCK   IG L +AR+L  S+   G   N ++Y I I+  C   ++++A +L+ +
Sbjct: 237 NVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNE 296

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M   G  PN   ++TL+   ++  +     +L   M    +   + I  I +D L KN +
Sbjct: 297 MPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGV 356

Query: 248 SLNSIPQFNRQK 259
              ++  FN  K
Sbjct: 357 LFEAMELFNELK 368



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 16/233 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   ++N ++ GL K     +   L+ +M+   ++P++ T N L +  C  N  +E    
Sbjct: 88  PPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAA 147

Query: 74  FIEMMDRGLQSDVVTFNVIMD---ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              ++ RG   D+VT+N ++     LCK    DEA  + + M   G+ P      N+++Y
Sbjct: 148 MTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIP------NVISY 201

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ---MDKAHDLFLD 187
             L+ G C  GKL+ ++ L   +   G+ PN+V +N+ I  LC + +   +  A  LFL 
Sbjct: 202 SSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLS 261

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM----DKRNVMPYASILS 236
           M  KG   N + +T L+  + +  +  + + L   M     + NV  Y+++L+
Sbjct: 262 MPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLT 314



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 9/179 (5%)

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A + F  MM       + +FN ++  L K     +   L + M   G+ PD F  +NI+
Sbjct: 73  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLF-TLNIL 131

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI---HALCNDEQMDKAHDLF 185
           A     + LC + ++         + R G +P++VTYN  I   + LC     D+A ++F
Sbjct: 132 A-----NCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIF 186

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +M+ +G+ PN + +++L+  F    +  +   L   M  + V P     ++++D+L K
Sbjct: 187 EEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCK 245


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y+ IIDGLCK+G    +  LF++M+D+ I PN+VTYN +I GFC +   + A+ 
Sbjct: 250 KPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQR 309

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM++R +  +VVT+N +++   K  K  EA  L D M+  G+ P      N + Y  
Sbjct: 310 LLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIP------NTITYNS 363

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK  +L  A ++   +   G  P+V T+   I   C  +++D   +L  +M  +G
Sbjct: 364 MIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRG 423

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V + TL+  F    + +  ++L + M    V P     + ++D L  N
Sbjct: 424 LVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN 476



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  T+ T+IDG C    +D   EL  +M    +  N VTYN+LIHGFC   D N A 
Sbjct: 389 CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAAL 448

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-----CEIN 126
            L  +M+  G+  D+VT N ++D LC N K+ +A  +   M +  +  DA       E +
Sbjct: 449 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPD 508

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           ++ Y  LI GL   GK   A EL + +   G++P+ +TY+  I  LC   ++D+A  +F+
Sbjct: 509 VLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFV 568

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
            M  K  +PN V F TL+  + +       +EL   M +R ++  A I
Sbjct: 569 SMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAII 616



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 127/258 (49%), Gaps = 42/258 (16%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEG--------------------------FVD-------- 33
           F  +C+P+ +T+ T+++GLC+EG                          FVD        
Sbjct: 174 FHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDT 233

Query: 34  -KAKELFLQMKD-ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
             A  L  +M++  +I PNVV Y+++I G C     +++  LFIEM D+G+  ++VT+N 
Sbjct: 234 VSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNC 293

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++   C + +   A RLL  M++  + P      N+V Y  LI+   K GK   A EL  
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISP------NVVTYNALINAFVKEGKFFEAAELYD 347

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G++PN +TYN  I   C  +++D A D+F  M  KG +P+   FTTL+  +    
Sbjct: 348 EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAK 407

Query: 212 ETSKVIELLRSMDKRNVM 229
                +ELL  M +R ++
Sbjct: 408 RIDDGMELLHEMPRRGLV 425



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 129/228 (56%), Gaps = 17/228 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT+TYN++IDG CK+  +D A+++F  M  +  +P+V T+ +LI G+C A   ++   L
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RGL ++ VT+N ++   C    ++ A  L   MI  GV PD      IV    L
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD------IVTCNTL 469

Query: 134 IDGLCKIGKLKNARELSQSLTRA-----------GLMPNVVTYNITIHALCNDEQMDKAH 182
           +DGLC  GKLK+A E+ +++ ++           G+ P+V+TYNI I  L N+ +  +A 
Sbjct: 470 LDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAE 529

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +L+ +M  +G+ P+ + +++++    +++   +  ++  SM  ++  P
Sbjct: 530 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSP 577



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 11/234 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+ T++ GLC +  V +A +LF Q+      P+V+T+ +L++G C      EA  L
Sbjct: 149 PDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVAL 204

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGC 132
              M++ GLQ D +T+   +D +CK      A  LL  M +   ++P      N+V Y  
Sbjct: 205 LDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKP------NVVIYSA 258

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK G+  ++  L   +   G+ PN+VTYN  I   C   +   A  L  +M  + 
Sbjct: 259 IIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERK 318

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++PN V +  L+ +F+++ +  +  EL   M  R ++P     + ++D   K +
Sbjct: 319 ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 18/226 (7%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIH 59
           VC P+ VT NT++DGLC  G +  A E+F  M+              + P+V+TYN LI 
Sbjct: 459 VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILIC 517

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G        EAE L+ EM  RG+  D +T++ ++D LCK  ++DEAT++   M      P
Sbjct: 518 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSP 577

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                 N+V +  LI+G CK G++ +  EL   + R G++ + + Y   I+       ++
Sbjct: 578 ------NVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNIN 631

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            A D+F +M   GV P+ +    ++  F  K E  + + +L  + +
Sbjct: 632 GALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQR 677



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 38/263 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +N ++  + +    D    L+ +M+ + I  ++ ++  LI  FC  +    A   
Sbjct: 79  PSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 138

Query: 74  FIEMMDRGLQSDVV-------------------------------TFNVIMDELCKNRKM 102
           F ++   GL  DVV                               TF  +M+ LC+  ++
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRV 198

Query: 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPN 161
            EA  LLD M++ G++PD       + YG  +DG+CK+G   +A  L + +   + + PN
Sbjct: 199 VEAVALLDRMVENGLQPDQ------ITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPN 252

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VV Y+  I  LC D +   +H+LF++M+ KG+ PN V +  ++  F      S    LL+
Sbjct: 253 VVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQ 312

Query: 222 SMDKRNVMPYASILSIIVDLLVK 244
            M +R + P     + +++  VK
Sbjct: 313 EMLERKISPNVVTYNALINAFVK 335



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 10/172 (5%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M+       V+ FN +M  + +  + D    L   M +  +R D      I ++  
Sbjct: 68  LFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCD------IYSFTI 121

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C   KL  A      LT+ GL P+VVT+   +H LC D ++ +A DLF  +    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---- 177

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+ + FTTLM    R+    + + LL  M +  + P        VD + K
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCK 229


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 128/232 (55%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VT+N +I+ LC+EG   KAK+    M+   + PNVVTYN++I+G+C       A  
Sbjct: 214 KSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASK 273

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M D+ L+ D  T+N  +  LCK R+++EA+ +L  +++ G+ P+A      V Y  
Sbjct: 274 IFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNA------VTYNA 327

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C  G L  A      +   G++ +V TYN+ IHAL  ++++++A D+  +M  KG
Sbjct: 328 LIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKG 387

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V P+ V +   +  + R     K + L   M ++N+ P     + ++D+  K
Sbjct: 388 VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGK 439



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 120/233 (51%), Gaps = 8/233 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +GV  KPN VTYNT+I+G C  G  + A ++F  MKD+N+ P+  TYNS I   C     
Sbjct: 246 YGV--KPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRI 303

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA  +  ++++ GL  + VT+N ++D  C    +D+A    D M+  G+    F     
Sbjct: 304 EEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVF----- 358

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  LI  L    +++ A ++ + +   G+ P+VVTYNI I+  C      KA  LF +
Sbjct: 359 -TYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDE 417

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           M  K + P    +T+L+  F ++N  S+  E  +   K  ++P   + + ++D
Sbjct: 418 MVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALID 470



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 8/241 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV  +P+ VTYN  I+G C+ G   KA  LF +M ++NI P V TY SLI  F   N
Sbjct: 384 REKGV--EPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRN 441

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EAE  F + +  G+  D++ FN ++D  C N  +D A +LL  M    V PD     
Sbjct: 442 RMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDE---- 497

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V +  L+ G C+  K++ A++L   +   G+ P+ ++YN  I        M  A ++F
Sbjct: 498 --VTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVF 555

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M   G  P  + +  L+  + +  E     ELLR M  + + P  S    +++ +  N
Sbjct: 556 DEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTN 615

Query: 246 E 246
           +
Sbjct: 616 D 616



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 126/257 (49%), Gaps = 48/257 (18%)

Query: 9   GVVCK-------PNTVTYNTIIDGLCKEGFVDKA-----------------------KEL 38
           GV+CK       PN VTYN +IDG C +G +DKA                         L
Sbjct: 308 GVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHAL 367

Query: 39  FLQ------------MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV 86
           FL+            M+++ + P+VVTYN  I+G+C   +  +A  LF EM+++ ++  V
Sbjct: 368 FLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTV 427

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
            T+  ++D   K  +M EA       I+ G+ PD      I+ +  LIDG C  G +  A
Sbjct: 428 ETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPD------IIMFNALIDGHCVNGNIDRA 481

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
            +L + +  A ++P+ VT+N  +   C + ++++A  L  +M+ +G+ P+ + + TL+  
Sbjct: 482 FQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISG 541

Query: 207 FIRKNETSKVIELLRSM 223
           + ++ +    +E+   M
Sbjct: 542 YSKRGDMKDALEVFDEM 558



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 109/227 (48%), Gaps = 6/227 (2%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           T+ ++ ++   C+    D+A E    MK+  I P   T NSL+      N    A +++ 
Sbjct: 147 TLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYE 206

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           EM+   ++S +VTFN++++ LC+  K  +A   +  M   GV+P      N+V Y  +I+
Sbjct: 207 EMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKP------NVVTYNTVIN 260

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           G C  GK + A ++ +++    L P+  TYN  I  LC + ++++A  +   +   G+ P
Sbjct: 261 GYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVP 320

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           N V +  L+     K +  K       M  R ++      ++++  L
Sbjct: 321 NAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHAL 367


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  144 bits (363), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 6/235 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P++ TY+T+++GL K G V++A ++F +M D  +  ++V YNSL+     A + +
Sbjct: 233 GDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMD 292

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
               L  EM  +G   D  +FN IMD L K  K D A  +   M++ G +PD      ++
Sbjct: 293 RVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPD------LI 346

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  LID   + G    AR++ + +  AG +P   TYN  IH L  D Q+D+A  +  +M
Sbjct: 347 SYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEM 406

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           E  G  P+ V +  LM    ++ E  +   L + M  + V P     ++ +D L 
Sbjct: 407 ETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLA 461



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ +   YN +I    + G +D A E+F +MK +   P+  TY  L++    A    EA 
Sbjct: 96  CQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEAR 155

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F  M++RGL  ++ T+N++MD   K  ++D A  L   M + G +P      ++V Y 
Sbjct: 156 SFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQP------SVVTYN 209

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LC  G++  AR+L   +T  G  P+  TY+  ++ L    ++++AH +F +M  +
Sbjct: 210 ILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDR 269

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           GVA + V + +L+ +  +     +V +L++ M ++   P A   + I+D L K
Sbjct: 270 GVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGK 322



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            +P+  TY  +++ L K G V +A+  F  M +  + PN+ TYN L+  F      + A 
Sbjct: 131 SEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMAL 190

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  RG Q  VVT+N+++D LC   ++  A +L   M   G  PD++       Y 
Sbjct: 191 GLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYT------YS 244

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++GL K G+++ A ++ + +   G+  ++V YN  +  L     MD+   L  +M  K
Sbjct: 245 TLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRK 304

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G  P+   F T+M +  + N+     E+   M +    P     +I++D
Sbjct: 305 GFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILID 353



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 9/223 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  ++NTI+D L K    D A+E+F +M +    P++++YN LI  +    D  +A  +
Sbjct: 308 PDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQM 367

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++ G   +  T+N ++  L  + ++DEA  +L+ M   G RPD      +V Y  L
Sbjct: 368 LEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPD------VVTYNRL 421

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +D L K G+ + A  L Q +   G+ P+ ++Y + I  L  D+++D+A  LF DM+  G 
Sbjct: 422 MDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGC 481

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
             +  ++  L+ +  R  +T    +L     +   MP  S L+
Sbjct: 482 PVDKAMYRILIRAAHRAGDTELEAQL---KHESQFMPVESRLT 521



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 8/237 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +PNT+    +I    +      A +LF Q +    +P V  +  LI     + +  
Sbjct: 25  GRPLRPNTLV--KLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFE 82

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            AE ++ +++ +G Q D   +NV++    ++ ++D A  +   M   G  PD +      
Sbjct: 83  RAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYT----- 137

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            YG L++ L K G+++ AR    ++   GL PN+ TYN+ + A     Q+D A  LF +M
Sbjct: 138 -YGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEM 196

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + +G  P+ V +  L+ +           +L   M      P +   S +V+ L K+
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKS 253



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN ++D L K G   +A  LF QMKD+ + P+ ++Y   I G  + +  +EA 
Sbjct: 411 CRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEAL 470

Query: 72  YLFIEMMDRGLQSDVVTFNVIM 93
            LF +M   G   D   + +++
Sbjct: 471 VLFKDMKAVGCPVDKAMYRILI 492


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA- 70
           C P+ VT+N +I+ LC++  + +A ++  +M      PN ++YN L+HGFC     + A 
Sbjct: 345 CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAI 404

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           EYL I M+ RG   D+VT+N ++  LCK+ K D A  +L+ +   G  P       ++ Y
Sbjct: 405 EYLEI-MVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSP------VLITY 457

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGL K+GK + A EL + + R GL P+++TY+  +  L  + ++D+A  +F DME 
Sbjct: 458 NTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEG 517

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             + P+ V +  +M    +  +TS+ I+ L  M ++   P  +  +I+++
Sbjct: 518 LSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIE 567



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ VTYN +I+G+CKEG +D+A +    M      PNV+T+N ++   C      +AE
Sbjct: 275 CKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAE 334

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G    VVTFN++++ LC+ R +  A  +L+ M + G  P      N ++Y 
Sbjct: 335 RLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMP------NSLSYN 388

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G C+  K+  A E  + +   G  P++VTYN  + ALC D + D A ++   +  K
Sbjct: 389 PLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSK 448

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           G +P  + + T++    +  +T    ELL  M ++ + P    Y+++L
Sbjct: 449 GCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLL 496



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNTI+  LC  G + +A E+  +       P+V+TY  LI   C  +   +A  L
Sbjct: 207 PDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKL 266

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G + DVVT+NV+++ +CK  ++DEA + L+ M      P   C+ N++ +  +
Sbjct: 267 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM------PLYGCQPNVITHNII 320

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  +C  G+  +A  L   + R G  P+VVT+NI I+ LC    + +A D+   M   G 
Sbjct: 321 LRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGC 380

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + +  L+  F ++ +  + IE L  M  R   P
Sbjct: 381 MPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYP 417



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 124/240 (51%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +R+    C P+ +TY  +I+  C +  V +A +L  +M+ +   P+VVTYN LI+G C  
Sbjct: 233 DRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 292

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA      M   G Q +V+T N+I+  +C   +  +A RLL  M++ G  P     
Sbjct: 293 GRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSP----- 347

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++V +  LI+ LC+   L  A ++ + + + G MPN ++YN  +H  C +++MD+A + 
Sbjct: 348 -SVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEY 406

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M  +G  P+ V + TL+ +  +  +    +E+L  +  +   P     + ++D L K
Sbjct: 407 LEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTK 466



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 118/235 (50%), Gaps = 11/235 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +   ++I G C+ G   KA  +   +++    P+V+TYN LI G+C + + ++A   
Sbjct: 140 PDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKA--- 196

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +++++R  +  DVVT+N I+  LC + K+ EA  +LD  +Q    PD      ++ Y  
Sbjct: 197 -LQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPD------VITYTI 249

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+  C    +  A +L   + + G  P+VVTYN+ I+ +C + ++D+A     +M + G
Sbjct: 250 LIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYG 309

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
             PN +    ++ S            LL  M ++   P     +I+++ L +  +
Sbjct: 310 CQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRL 364



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           NG+R F           N  +  L + G +++  +   +M  +   P+V+   SLI GFC
Sbjct: 100 NGSRSF------EEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFC 153

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
            +    +A  +   + + G   DV+T+NV++   CK+ ++D+A ++L+ M    V PD  
Sbjct: 154 RSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPD-- 208

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
               +V Y  ++  LC  GKLK A E+     +    P+V+TY I I A CND  + +A 
Sbjct: 209 ----VVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAM 264

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            L  +M  KG  P+ V +  L+    ++    + I+ L +M      P
Sbjct: 265 KLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQP 312



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 6/126 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  +TYNT+IDGL K G  + A EL  +M+ + + P+++TY++L+ G       +EA 
Sbjct: 450 CSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAI 509

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M    ++   VT+N IM  LCK ++   A   L  M++ G +P          Y 
Sbjct: 510 KIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTK------ATYT 563

Query: 132 CLIDGL 137
            LI+G+
Sbjct: 564 ILIEGI 569



 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           G+  KP+ VTYN I+ GLCK     +A +    M ++   P   TY  LI G 
Sbjct: 517 GLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 130/231 (56%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+I+ +CK G + +A E+F QM+   + PN  TY +LI GFC     NEA  +
Sbjct: 345 PNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKV 404

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G    VVT+N ++   C   ++ EA  +L  M++ G+ PD      +V+Y  +
Sbjct: 405 LSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPD------VVSYSTV 458

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+  +L  A ++ + +   G++P+ VTY+  I  LC  +++ +A DLF +M  +G+
Sbjct: 459 IAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGL 518

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V +T+L+ ++    E SK + L   M +R  +P     S++++ L K
Sbjct: 519 PPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNK 569



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 123/218 (56%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY T+IDG C++G +++A ++  +M     +P+VVTYN+L+HG+C+     EA  
Sbjct: 379 RPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVG 438

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M++RGL  DVV+++ ++   C+ R++ +A ++ + M++ GV PD       V Y  
Sbjct: 439 ILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDT------VTYSS 492

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC   KL  A +L + + R GL P+ VTY   I+A C D ++ KA  L  +M  +G
Sbjct: 493 LIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRG 552

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             P+ V ++ L+    +K  T     LL  +     +P
Sbjct: 553 FLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVP 590



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 131/236 (55%), Gaps = 7/236 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+++G CKEG + +   L  +M  + ++PNVVTY +LI+  C A + + A  +
Sbjct: 310 PDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEI 369

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M  RGL+ +  T+  ++D  C+   M+EA ++L  MI  G  P      ++V Y  L
Sbjct: 370 FDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSP------SVVTYNAL 423

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G C +G+++ A  + + +   GL P+VV+Y+  I   C + ++ KA  +  +M  KGV
Sbjct: 424 VHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGV 483

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEIS 248
            P+ V +++L+     + +  +  +L R M +R + P   +  S+I    V  E+S
Sbjct: 484 LPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELS 539



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N ++YN++I+GLC +G + +  EL  +M+ + + P+ VTYN+L++GFC   + ++   L 
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLL 335

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +GL  +VVT+  +++ +CK   +  A  + D M   G+RP      N   Y  LI
Sbjct: 336 SEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRP------NERTYTTLI 389

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG C+ G +  A ++   +  +G  P+VVTYN  +H  C   ++ +A  +   M  +G+ 
Sbjct: 390 DGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           P+ V ++T++  F R+ E  K  ++   M ++ V+P    Y+S++
Sbjct: 450 PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLI 494



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN II G+  +G ++K      +M+ E I+PNVVTYN+LI   C      EA  L
Sbjct: 205 PNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMAL 264

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G+ ++++++N +++ LC   +M E   L++ M   G+ PD       V Y  L
Sbjct: 265 LRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDE------VTYNTL 318

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G CK G L     L   +   GL PNVVTY   I+ +C    + +A ++F  M V+G+
Sbjct: 319 VNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGL 378

Query: 194 APNCVIFTTLMPSFIRK---NETSKVI-ELLRSMDKRNVMPYASIL 235
            PN   +TTL+  F +K   NE  KV+ E++ S    +V+ Y +++
Sbjct: 379 RPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALV 424



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 11/232 (4%)

Query: 14  PNTVTYNTIIDGLCKEGF-----VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           P  ++YN ++D L +         D A+ +F  M    ++PNV TYN +I G     D  
Sbjct: 165 PTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLE 224

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +      +M   G+  +VVT+N ++D  CK +K+ EA  LL  M  GGV        N++
Sbjct: 225 KGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGV------AANLI 278

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  +I+GLC  G++    EL + +   GL+P+ VTYN  ++  C +  + +   L  +M
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             KG++PN V +TTL+    +    S+ +E+   M  R + P     + ++D
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLID 390



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYNT+ID  CK+  V +A  L   M    +  N+++YNS+I+G C     +E   L
Sbjct: 240 PNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGEL 299

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL  D VT+N +++  CK   + +   LL  M+  G+ P      N+V Y  L
Sbjct: 300 VEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSP------NVVTYTTL 353

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ +CK G L  A E+   +   GL PN  TY   I   C    M++A+ +  +M V G 
Sbjct: 354 INCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGF 413

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           +P+ V +  L+  +       + + +LR M +R + P    Y+++++
Sbjct: 414 SPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIA 460



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 127/272 (46%), Gaps = 44/272 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y+T+I G C+E  + KA ++  +M ++ + P+ VTY+SLI G C      EA  L
Sbjct: 450 PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDL 509

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------- 120
           F EMM RGL  D VT+  +++  C + ++ +A RL D M+Q G  PD             
Sbjct: 510 FREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNK 569

Query: 121 -------------AFCEINI---VAYGCLID---------------GLCKIGKLKNAREL 149
                         F E ++   V Y  LI+               G C  G +  A  +
Sbjct: 570 KARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRV 629

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            +++ +    PN   YN+ IH       + KA++L++++E    A + V    L+ +  R
Sbjct: 630 FKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAR 689

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           +    ++  LL+++ +   +  A +  ++V++
Sbjct: 690 EGMNDELSRLLQNILRSCRLNDAKVAKVLVEV 721



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 116/235 (49%), Gaps = 11/235 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN-----E 69
           ++  ++ ++  L + GFV KA  L          P V++YN+++      +  N     +
Sbjct: 131 SSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDD 190

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           AE +F +M+  G+  +V T+NVI+  +     +++    +  M + G+ P      N+V 
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISP------NVVT 244

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LID  CK  K+K A  L +++   G+  N+++YN  I+ LC   +M +  +L  +M 
Sbjct: 245 YNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMR 304

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            KG+ P+ V + TL+  F ++    + + LL  M  + + P     + +++ + K
Sbjct: 305 GKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK 359



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 47/109 (43%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   YN +I G  + G V KA  L+++++  +   + V   +L+         +E   
Sbjct: 639 KPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSR 698

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           L   ++     +D     V+++   K   MD    +L  M + G+ PD 
Sbjct: 699 LLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPDG 747


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 126/246 (51%), Gaps = 9/246 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VTY  I+DGLCK G    A +L  +M+D+  +PN+ TYN ++ G C     +EA+
Sbjct: 76  CLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAK 135

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM  RG   DVVT+N  +  LCK  ++DEA + L  M    V PD      +V+Y 
Sbjct: 136 KMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPD------VVSYT 186

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GLCK G L +A  +   +T  G  P+VVTY+  I   C   ++++A  L   M   
Sbjct: 187 TVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKL 246

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  PN V + +L+ +  R     K  ++L  M++R   P     +  +D L K E    +
Sbjct: 247 GCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKA 306

Query: 252 IPQFNR 257
              F+R
Sbjct: 307 KAVFDR 312



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G  C P+   YN +I G  K     +A +   +M   +  P VVTY +++ G C A 
Sbjct: 37  KEMG--CVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAG 94

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  L  EM D+G   ++ T+NVI++ LC+ RK+DEA ++L+ M   G  PD     
Sbjct: 95  RTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD----- 149

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y   I GLCK  ++  AR+    L R  + P+VV+Y   I+ LC    +D A  + 
Sbjct: 150 -VVTYNSFIKGLCKCDRVDEARKF---LARMPVTPDVVSYTTVINGLCKSGDLDSASRML 205

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASILSII 238
             M  +G  P+ V +++L+  F +  E  + + LL SM K     N++ Y S+L  +
Sbjct: 206 DQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGAL 262



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 139/276 (50%), Gaps = 31/276 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN V YN+++  L + G + KA+++ ++M+     P+VV+YN+ I G C A    +A+
Sbjct: 248 CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAK 307

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA-------------------TRLLDLM 112
            +F  M++RG   +  +++++++ELCK +++D+A                   T LLD +
Sbjct: 308 AVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGL 367

Query: 113 IQGG-----------VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
            +GG           V  +  CE ++  Y  ++D  CK  ++  A ++ + +       N
Sbjct: 368 CKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC-N 426

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVT+NI +H LC D+++  A  + L M  +G  P+ V + TL+ +  +  +++  +EL  
Sbjct: 427 VVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFE 486

Query: 222 SMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
              K   +P     S ++  LV   ++  +   F +
Sbjct: 487 EAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTK 522



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 9/234 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  T+  ++ GLC+   ++KA++L  +MK+    P+   YN+LI G+  A D  +A 
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAF 65

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               EM+       VVT+  I+D LCK  +  +A +LLD M   G  P      NI  Y 
Sbjct: 66  KFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSP------NIYTYN 119

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +++GLC+  KL  A+++ + +   G  P+VVTYN  I  LC  +++D+A      M   
Sbjct: 120 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP-- 177

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V P+ V +TT++    +  +      +L  M  R   P     S ++D   K 
Sbjct: 178 -VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKG 230



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 15/235 (6%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C+P+   YN ++D  CK   +DKA ++  QM + N   NVVT+N L+HG C  +  ++A
Sbjct: 388 ICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC-NVVTWNILVHGLCVDDRLSDA 446

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           E + + M+D G   D VT+  ++D +CK  K   A  L +  ++GG  PD      +V Y
Sbjct: 447 ETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPD------VVTY 500

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GL      + A  L   L       +V  +N  I     +   D    LF+++  
Sbjct: 501 SALITGLVHENMAEEAYLLFTKL-------DVALWNAMILGYAENGSGDLGLKLFVELIE 553

Query: 191 KGVAPNCVIFTTLMPSFIRKNET-SKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             V PN   F   +   + K E+  K   L     K    P   + + ++D+  K
Sbjct: 554 SDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAK 608



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 91/189 (48%), Gaps = 30/189 (15%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------------- 120
           M+D+  Q D  TF +++  LC++ ++++A +LL  M + G  PD                
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 121 ---AF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
              AF          C   +V Y  ++DGLCK G+ K+A +L   +   G  PN+ TYN+
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD-KR 226
            +  LC + ++D+A  +  +M V+G  P+ V + + +    + +   +  + L  M    
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTP 180

Query: 227 NVMPYASIL 235
           +V+ Y +++
Sbjct: 181 DVVSYTTVI 189



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           MI    +PDAF       +  L+ GLC+  +L+ AR+L   +   G +P+   YN  I  
Sbjct: 1   MIDKSCQPDAF------TFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISG 54

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
               +   +A     +M      P  V +T ++    +   T   ++LL  M  +   P 
Sbjct: 55  YSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPN 114

Query: 232 ASILSIIVDLL 242
               ++IV+ L
Sbjct: 115 IYTYNVIVEGL 125


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 141/279 (50%), Gaps = 31/279 (11%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           + KPN VT+N++I GLC  G + +A ++   M++     N+VTYN LI G    +   +A
Sbjct: 322 IVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKA 381

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-------- 122
             L  EM   GL+ D  T+++++   CK  ++D A  LL  M   G+ P+ F        
Sbjct: 382 MELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVA 441

Query: 123 -CE-------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
            CE                   +++VAY  +I G CK G LK A+EL +S+   GL P+ 
Sbjct: 442 MCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDA 501

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTY+I I+       M+ A+ +   M   G  P+  +F +L+  +  K E +KV+EL+R 
Sbjct: 502 VTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIRE 561

Query: 223 MDKRNVMPYASILSIIVDLLV---KNEISLNSIPQFNRQ 258
           M  +N+   + I+S +   LV   + +  L S+P F+ +
Sbjct: 562 MITKNIALDSKIISTLSTSLVASNEGKALLQSLPDFSAE 600



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 12/236 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN V+Y  ++  LC +   D+A  L   M+   +  +VVTY +LI G C A + ++A 
Sbjct: 111 CRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAV 170

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM + G++ +VV ++ ++   CK+ + ++  ++   M + G+ PD      +V Y 
Sbjct: 171 ELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD------VVMYT 224

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID LCK+GK K A  +   + R GL PNVVTYN+ I+ +C +  + +A  +   M  K
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM------DKRNVMPYASILSIIVDL 241
           GVAP+ V + TL+       E  + + LL  M       K NV+ + S++  + D+
Sbjct: 285 GVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDI 340



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 12/202 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  GV  + + VTY T+I GLC    VDKA EL  +M +  I PNVV Y+SL+ G+C + 
Sbjct: 142 RSAGV--RADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSG 199

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +   +F+EM ++G++ DVV +  ++D LCK  K  +A  ++D+M++ G+ P      
Sbjct: 200 RWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP------ 253

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+V Y  LI+ +CK G +K A  + + ++  G+ P+VVTYN  I  L +  +MD+A  L 
Sbjct: 254 NVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLL 313

Query: 186 LDMEVKG---VAPNCVIFTTLM 204
            +M V+G   V PN V F +++
Sbjct: 314 EEM-VRGKNIVKPNVVTFNSVI 334



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 8/220 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y  +ID LCK G   KA  +   M    + PNVVTYN LI+  C      EA  
Sbjct: 217 EPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIG 276

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRPDAFCEINIVAY 130
           +  +M ++G+  DVVT+N ++  L    +MDEA  LL+ M++G   V+P      N+V +
Sbjct: 277 VLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP------NVVTF 330

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I GLC IG+++ A ++   +   G M N+VTYN+ I  L    ++ KA +L  +M  
Sbjct: 331 NSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS 390

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            G+ P+   ++ L+  F +  +  +  +LL +M  R + P
Sbjct: 391 LGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEP 430



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D V++N ++  LC+    D A  LL  M    + P   C  N V+Y  L+  LC      
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAM---SLEPHPACRPNAVSYTVLMRALCADRLAD 132

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            A  L +S+  AG+  +VVTY   I  LC+  ++DKA +L  +M   G+ PN V++++L+
Sbjct: 133 QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLL 192

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + +      V ++   M ++ + P   + + ++D L K
Sbjct: 193 QGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 141/279 (50%), Gaps = 31/279 (11%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           + KPN VT+N++I GLC  G + +A ++   M++     N+VTYN LI G    +   +A
Sbjct: 322 IVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKA 381

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-------- 122
             L  EM   GL+ D  T+++++   CK  ++D A  LL  M   G+ P+ F        
Sbjct: 382 MELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVA 441

Query: 123 -CE-------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
            CE                   +++VAY  +I G CK G LK A+EL +S+   GL P+ 
Sbjct: 442 MCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDA 501

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTY+I I+       M+ A+ +   M   G  P+  +F +L+  +  K E +KV+EL+R 
Sbjct: 502 VTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIRE 561

Query: 223 MDKRNVMPYASILSII-VDLLVKNEIS--LNSIPQFNRQ 258
           M  +N+   + I+S +   L+  NE    L S+P F+ +
Sbjct: 562 MITKNIALDSKIISTLSTSLVASNEGKALLQSLPDFSAE 600



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 12/237 (5%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            C+PN V+Y  ++  LC +   D+A  L   M+   +  +VVTY +LI G C A + ++A
Sbjct: 110 ACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKA 169

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  EM + G++ +VV ++ ++   CK+ + ++  ++   M + G+ PD      +V Y
Sbjct: 170 VELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD------VVMY 223

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LID LCK+GK K A  +   + R GL PNVVTYN+ I+ +C +  + +A  +   M  
Sbjct: 224 TGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSE 283

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM------DKRNVMPYASILSIIVDL 241
           KGVAP+ V + TL+       E  + + LL  M       K NV+ + S++  + D+
Sbjct: 284 KGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDI 340



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 12/202 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  GV  + + VTY T+I GLC    VDKA EL  +M +  I PNVV Y+SL+ G+C + 
Sbjct: 142 RSAGV--RADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSG 199

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +   +F+EM ++G++ DVV +  ++D LCK  K  +A  ++D+M++ G+ P      
Sbjct: 200 RWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP------ 253

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+V Y  LI+ +CK G +K A  + + ++  G+ P+VVTYN  I  L +  +MD+A  L 
Sbjct: 254 NVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLL 313

Query: 186 LDMEVKG---VAPNCVIFTTLM 204
            +M V+G   V PN V F +++
Sbjct: 314 EEM-VRGKNIVKPNVVTFNSVI 334



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 8/220 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y  +ID LCK G   KA  +   M    + PNVVTYN LI+  C      EA  
Sbjct: 217 EPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIG 276

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRPDAFCEINIVAY 130
           +  +M ++G+  DVVT+N ++  L    +MDEA  LL+ M++G   V+P      N+V +
Sbjct: 277 VLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP------NVVTF 330

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I GLC IG+++ A ++   +   G M N+VTYN+ I  L    ++ KA +L  +M  
Sbjct: 331 NSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS 390

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            G+ P+   ++ L+  F +  +  +  +LL +M  R + P
Sbjct: 391 LGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEP 430



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D V++N ++  LC+    D A  LL  M    + P   C  N V+Y  L+  LC      
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAM---SLEPHPACRPNAVSYTVLMRALCADRLAD 132

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            A  L +S+  AG+  +VVTY   I  LC+  ++DKA +L  +M   G+ PN V++++L+
Sbjct: 133 QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLL 192

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + +      V ++   M ++ + P   + + ++D L K
Sbjct: 193 QGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 121/244 (49%), Gaps = 6/244 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  +Y+ +I GLC+   VD+A EL  +M D    PNVVTY SL+ G C      EA 
Sbjct: 83  CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAV 142

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M+ RG   D V +NV++D   K   M EA RL + M++ G  P  F       Y 
Sbjct: 143 DLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVF------TYN 196

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G  + G+    + L + + R G +PN+ T+N  +   C    M +AH LFL+M   
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL 256

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+ V + TLM     K +  +   LLR M +  V P     +I++D   K+    ++
Sbjct: 257 GCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHA 316

Query: 252 IPQF 255
           I  F
Sbjct: 317 IKLF 320



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYN+++ G  ++G   + + LF  M  +   PN+ T+N+L+ GFC   D  EA 
Sbjct: 188 CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAH 247

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF+EM   G   DVV++N +M  +C   K  EA RLL  MI+ GV PD      IV+Y 
Sbjct: 248 RLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPD------IVSYN 301

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG  K G L +A +L   + ++GL P+  +Y+  I  LC   ++  A  +F DM   
Sbjct: 302 ILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN 361

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G AP+  +   L+    R    ++  EL ++M K   +P
Sbjct: 362 GSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVP 400



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            T++YN +++ L K G  D     +  M      PN  TY  L+   C A    EA  +F
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  +G   +V ++++++  LC+ +K+DEA  LL+ MI GG +P      N+V YG L+
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP------NVVTYGSLL 129

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLCK+GKLK A +L   +   G  P+ V YN+ I        M +A+ LF +M  KG  
Sbjct: 130 SGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCI 189

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           P    + +L+  F RK E  +V  L + M ++  +P
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVP 225



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+N ++DG CK G + +A  LFL+M+     P+VV+YN+L+ G C     +EA+
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQ 282

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+  G+  D+V++N+++D   K+  +D A +L   + + G+ PDAF      +Y 
Sbjct: 283 RLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAF------SYS 336

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +ID LC+ GK+  A  + + +   G  P+       +  LC  E++ ++ +LF  M   
Sbjct: 337 TIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKF 396

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              P    +  LM    +   +  V E+   + +R   P   I  +I++ L +++
Sbjct: 397 ECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSD 451



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 29/199 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT++ G+C +G   +A+ L  +M    + P++V+YN LI G+  +   + A 
Sbjct: 258 CPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAI 317

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV--- 128
            LF E+   GL+ D  +++ I+D LC+  K+  A  +   MI  G  PDA   I +V   
Sbjct: 318 KLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGL 377

Query: 129 --------------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                                      Y  L+  LCK  +  +  E+   LT  G  P+V
Sbjct: 378 CRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDV 437

Query: 163 VTYNITIHALCNDEQMDKA 181
               + +  L   +  + A
Sbjct: 438 EISKVILETLRRSDDKEAA 456


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 129/218 (59%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+NT+I+GLC E  V +A  L  +M +    PNVVTYNS+++G C + D + A  
Sbjct: 132 EPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALD 191

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M +R +++DV T++ I+D LC++  +D A  L   M   G++       ++V Y  
Sbjct: 192 LLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS------SLVTYNS 245

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLCK GK  +  +L + +T   ++PNV+T+N+ I     + ++ +A++L+ +M  KG
Sbjct: 246 LVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKG 305

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++PN + + +LM  +  +N  S+   +L  M + N  P
Sbjct: 306 ISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSP 343



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+ ++I G CK   VD+  +LF ++    +  N VTY+ L+ GFC +     AE
Sbjct: 341 CSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAE 400

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G+  DV+T+ +++D LC N K+++A  + + + +  +  D      IV Y 
Sbjct: 401 ELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLD------IVMYT 454

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++A  L  SL   G+ PNV+TY + I  LC    + +A+ L   ME  
Sbjct: 455 IIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 514

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  + +   +L+  M        AS + +++D+L
Sbjct: 515 GNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 565



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  TY+TIID LC++G +D A  LF +M+ + I  ++VTYNSL+ G C A   N+   
Sbjct: 202 KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQ 261

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M  R +  +V+TFNV++D   K  K+ EA  L   MI  G+ P      N + Y  
Sbjct: 262 LLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISP------NTITYNS 315

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C   +L  A  +   + R    P++VT+   I   C  +++D+   LF  +  +G
Sbjct: 316 LMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRG 375

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V ++ L+  F +  +     EL + M    V+P      I++D L  N
Sbjct: 376 LVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDN 428



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTYN+I++G+CK G    A +L  +M + N+  +V TY+++I   C     + A 
Sbjct: 166 CQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAI 225

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G++S +VT+N ++  LCK  K ++  +LL  M    + P      N++ + 
Sbjct: 226 SLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIP------NVITFN 279

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GKL+ A EL + +   G+ PN +TYN  +   C   ++ +A+++   M   
Sbjct: 280 VLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRN 339

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             +P+ V FT+L+  + +     + ++L R + KR ++      SI+V
Sbjct: 340 NCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILV 387



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V ++    G+      +   +   +M+   I  N+ T N +I+ FC       A  +
Sbjct: 63  PSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 122

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++M  G + D  TFN +++ LC   K+ EA  L+  M++ G +P      N+V Y  +
Sbjct: 123 LGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQP------NVVTYNSI 176

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+CK G    A +L + +    +  +V TY+  I +LC D  +D A  LF +ME KG+
Sbjct: 177 VNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 236

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + V + +L+    +  + +  ++LL+ M  R ++P     ++++D+ VK
Sbjct: 237 KSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVK 287



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           NI     +I+  C+  K   A  +   + + G  P+  T+N  I+ LC + ++ +A  L 
Sbjct: 99  NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLV 158

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M   G  PN V + +++    +  +TS  ++LLR MD+RNV       S I+D L ++
Sbjct: 159 ARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRD 218


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TYN +ID LC  G + +A  L  +M+      NV+TYN+LI GFC      EAE
Sbjct: 310 CQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAE 369

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M  +GL  + VT+N ++D LCK+R++ EA +L+D MI  G++PD F       Y 
Sbjct: 370 EIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKF------TYN 423

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++   C+ G ++ A ++ Q++T  G  P++VTY   I  LC   +++ A  L   +++K
Sbjct: 424 SMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLK 483

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+      +  ++ +  ++  T + + L R M+++   P A    I+
Sbjct: 484 GMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIV 530



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 10/215 (4%)

Query: 21  TIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80
           + ID +  EG    A EL+ +MK++   P+  TYN LI   CY     EA  L  EM   
Sbjct: 284 SFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEIS 343

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLM-IQGGVRPDAFCEINIVAYGCLIDGLCK 139
           G   +V+T+N ++D  CKN+K++EA  + D M IQG  R       N V Y  LIDGLCK
Sbjct: 344 GCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSR-------NSVTYNTLIDGLCK 396

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
             +++ A +L   +   GL P+  TYN  +   C +  + KA D+   M   G  P+ V 
Sbjct: 397 SRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVT 456

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVM--PYA 232
           + TL+    +         LLRS+  + ++  P+A
Sbjct: 457 YGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHA 491



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 115/269 (42%), Gaps = 57/269 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI-------------- 58
           KP+  T+N +I  LCK   +  A  +  +M    + P+  T+ +L+              
Sbjct: 190 KPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFR 249

Query: 59  ---------------------HGFC--------------YANDGNE--AEYLFIEMMDRG 81
                                HGFC               +N+G    A  L+ EM ++G
Sbjct: 250 VKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKG 309

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
            Q D  T+N+++D LC   K+ EA  LL  M   G      C  N++ Y  LIDG CK  
Sbjct: 310 CQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISG------CARNVITYNTLIDGFCKNK 363

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           K++ A E+   +   GL  N VTYN  I  LC   ++ +A  L   M ++G+ P+   + 
Sbjct: 364 KIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYN 423

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +++  F R+ +  K  +++++M      P
Sbjct: 424 SMLTYFCREGDIQKAADIVQTMTSNGCEP 452



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 51/279 (18%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EFG+    +T+ YN +++ L     +   + +   M  + I P+V T+N LI   C A+ 
Sbjct: 151 EFGLAL--DTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQ 208

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMD-------------------------------- 94
              A  +  EM   GL  D  TF  +M                                 
Sbjct: 209 IRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNV 268

Query: 95  ---ELCKNRKMDEATRLLDLMIQGGVRPDAF----------CEINIVAYGCLIDGLCKIG 141
                CK  +++EA   +D M   G    A           C+ +   Y  LID LC  G
Sbjct: 269 LVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRG 328

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           KL+ A  L + +  +G   NV+TYN  I   C ++++++A ++F  ME++G++ N V + 
Sbjct: 329 KLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYN 388

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           TL+    +     +  +L+  M    + P    Y S+L+
Sbjct: 389 TLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLT 427



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 121/314 (38%), Gaps = 81/314 (25%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMK--DENINPNV------------------- 51
           +PN+  Y  I+  L K G  +  K++  +MK  D  I+  V                   
Sbjct: 84  RPNSSIYEEILRKLGKVGSFNSMKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILC 143

Query: 52  ---------------VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                          + YN L++     N     E +   M+ +G++ DV TFN+++  L
Sbjct: 144 IVEVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKAL 203

Query: 97  CKNRKMDEATRLLDLMIQGGVRP-----------------------------DAFCEINI 127
           CK  ++  A  +++ M   G+ P                             DA C +  
Sbjct: 204 CKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTN 263

Query: 128 VAYGCLIDGLCKIGKLKNAR----------------ELSQSLTRAGLMPNVVTYNITIHA 171
           V    L+ G CK G+++ A                 EL   +   G  P+  TYN+ I +
Sbjct: 264 VTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDS 323

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
           LC   ++ +A  L  +ME+ G A N + + TL+  F +  +  +  E+   M+ + +   
Sbjct: 324 LCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRN 383

Query: 232 ASILSIIVDLLVKN 245
           +   + ++D L K+
Sbjct: 384 SVTYNTLIDGLCKS 397



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 7/170 (4%)

Query: 43  KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102
           K  N  PN   Y  ++         N  + +  EM     Q D     + +D   K    
Sbjct: 79  KQPNFRPNSSIYEEILRKLGKVGSFNSMKDILQEMKGLDCQIDRGVLLIFIDSYAKFELY 138

Query: 103 DEATRLLDLM-IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +E   ++++M ++ G+  D       + Y  L++ L    KLK    +  ++   G+ P+
Sbjct: 139 EEILCIVEVMEVEFGLALDT------LLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPD 192

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
           V T+NI I ALC   Q+  A  +  +M   G+ P+   FTTLM  FI + 
Sbjct: 193 VSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEG 242



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 15/141 (10%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG- 67
           G+V  P+   YN +I  L K     +A  LF +M+++   P+  TY  +  G   +N G 
Sbjct: 484 GMVLTPHA--YNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGL--SNSGG 539

Query: 68  --NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA    IEM+++G   +  +F ++ + LC     D   +L+DL+++       F + 
Sbjct: 540 PIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSMEDTLIKLVDLVMEKA----NFSQN 595

Query: 126 NIVAYGCLIDGLCKIGKLKNA 146
            +V    +I G  KI K ++A
Sbjct: 596 EVV----MIRGFLKIRKFQDA 612


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 122/241 (50%), Gaps = 29/241 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V YNTIIDGL K+G    A  LF++M+++ I P++VTYN +I+GFC +   ++AE L
Sbjct: 251 PNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQL 310

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
             EM++R +  DVVTF+ +++   K  K  EA  L D M+   + P         D FC+
Sbjct: 311 LQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCK 370

Query: 125 IN--------------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
            N                    I+ +  LI G C+  ++ +  +L   +T AGL+ N +T
Sbjct: 371 QNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTIT 430

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   IH  C    ++ A DL  +M   GV PN V   TL+       +    +E+ ++M 
Sbjct: 431 YTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 225 K 225
           K
Sbjct: 491 K 491



 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +T+NT+I G C+   VD   +L  +M +  +  N +TY +LIHGFC   D N A+
Sbjct: 389 CSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQ 448

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-----GVRPDAFCEIN 126
            L  EM+  G+  +VVT N ++D LC N K+ +A  +   M +        RP    E +
Sbjct: 449 DLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPD 508

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LI GL   GK   A EL + +   G++P+ +TY+  I  LC   ++D+A  +F 
Sbjct: 509 VQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFD 568

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
            M  K  +P+ V F TL+  + +       +EL   M +R ++  A
Sbjct: 569 SMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADA 614



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 123/231 (53%), Gaps = 11/231 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  ++  ++   C    +  A   F ++     +P VVT+N+L+HG C  +  +EA  LF
Sbjct: 115 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLF 174

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M     + +VVTF  +M+ LC+  ++ EA  LLD M++ G++P      N + YG ++
Sbjct: 175 HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQP------NQITYGTIV 224

Query: 135 DGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           DG+CK+G   +A  L + +   + ++PNVV YN  I  L  D +   AH+LF++M+ K +
Sbjct: 225 DGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEI 284

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V +  ++  F      S   +LL+ M +R + P     S +++  VK
Sbjct: 285 FPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVK 335



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 18/224 (8%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIH 59
           VC PN VT NT++DGLC  G +  A E+F  M+              + P+V TYN LI 
Sbjct: 459 VC-PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILIC 517

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G        EAE L+ EM  RG+  D +T++ ++D LCK  ++DEAT++ D M      P
Sbjct: 518 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP 577

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           D      +V +  LI G CK G + +  EL   + + G++ + +TY   I+     + +D
Sbjct: 578 D------VVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNID 631

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            A D+F +M   GV P+ +    ++     K E  + + +L  +
Sbjct: 632 GALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDL 675



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 124/252 (49%), Gaps = 33/252 (13%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG + K    P  VT+NT++ GLC E  + +A +LF QM      PNVVT+ +L++G C 
Sbjct: 139 FGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCR 194

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN----------RKMDEATRLLDLMI 113
                EA  L   M++ GLQ + +T+  I+D +CK           RKM+E + ++    
Sbjct: 195 EGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIP--- 251

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
                       N+V Y  +IDGL K G+  +A  L   +    + P++VTYN  I+  C
Sbjct: 252 ------------NVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFC 299

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
              +   A  L  +M  + + P+ V F+ L+ +F+++ +  +  EL   M  R+++P   
Sbjct: 300 ISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTV 359

Query: 234 ILSIIVDLLVKN 245
             S ++D   K 
Sbjct: 360 TYSSMIDGFCKQ 371



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 7/189 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           + +R F  V +P+  TYN +I GL  EG   +A+EL+ +M    I P+ +TY+S+I G C
Sbjct: 497 DASRPFNGV-EPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC 555

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
             +  +EA  +F  M  +    DVVTFN ++   CK   +D+   L   M Q G+  DA 
Sbjct: 556 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADA- 614

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                + Y  LI G  K+  +  A ++ Q +  +G+ P+ +T    +  L + E++++A 
Sbjct: 615 -----ITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAV 669

Query: 183 DLFLDMEVK 191
            +  D+++ 
Sbjct: 670 AMLEDLQMS 678


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYN +I+GLCK   V KA++L ++M+   ++P+V T+N+LI  +  A    +   
Sbjct: 223 RPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFT 282

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +  +M  +G++SDV++F  ++   CKN K+ EA  +LD MI   V P         DA+ 
Sbjct: 283 VLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI 342

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           E                     +IV Y  L+ GLC+  ++  A EL  +L   GL P+VV
Sbjct: 343 ESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 402

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +YN  I A CN    DKA +L  +M   G+ P    + TL+ +         +  L + M
Sbjct: 403 SYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 462

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
             +NV P +SI  I+VD  V+ E
Sbjct: 463 LHKNVEPSSSIYGIMVDAYVRCE 485



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN ++ GLC+ G +D+ + L  +M   ++ P+  TY+ L  G     +      
Sbjct: 83  KPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLS 142

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF E + +G+     T +++++ LCK+ K+ +A ++L++++  G+ P        V Y  
Sbjct: 143 LFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVP------TTVIYNT 196

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C++  L+ A  + + +    + P+ +TYN  I+ LC  E + KA DL ++ME  G
Sbjct: 197 LINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSG 256

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P+   F TL+ ++    +  K   +L  M ++ +         +V    KN
Sbjct: 257 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN 309



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +I GL + G    A ++F +M D  + PN +TYN++I G     D      L
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M+  G + ++VT+NV++  LC+  +MDE   L+D M    + PD F           
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 124 -----------------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             + + AY C  L++GLCK GK+  A ++ + L   GL+P  V 
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I+  C    +  A  +F  M+ + + P+ + +  L+    +    +K  +L+  M+
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 253

Query: 225 KRNVMPYASILSIIVD 240
           K  V P     + ++D
Sbjct: 254 KSGVDPSVETFNTLID 269



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 114/216 (52%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + +++ +++   CK G + +A  +   M  +++ PN   YNS+I  +  + D  +A  
Sbjct: 293 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFL 352

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M + G+ + +VT+N+++  LC++ ++DEA  L+  +   G+RPD      +V+Y  
Sbjct: 353 LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPD------VVSYNT 406

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I   C  G    A EL Q + + G+ P + TY+  + AL +  ++     L+  M  K 
Sbjct: 407 IISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKN 466

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           V P+  I+  ++ +++R    SKV  L + M ++ +
Sbjct: 467 VEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 502



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 6/181 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   YN+IID   + G  ++A  L  +MK+  ++ ++VTYN L+ G C ++  +EAE L
Sbjct: 329 PNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 388

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              + ++GL+ DVV++N I+   C     D+A  LL  M + G+RP       +  Y  L
Sbjct: 389 IYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRP------TLRTYHTL 442

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  L   G++ +   L Q +    + P+   Y I + A    E   K   L  +M  KG+
Sbjct: 443 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 502

Query: 194 A 194
           A
Sbjct: 503 A 503



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNTII   C +G  DKA EL  +M    I P + TY++L+     A   ++ E 
Sbjct: 398 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMEC 457

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           L+ +M+ + ++     + +++D   +     +   L   M + G+  D
Sbjct: 458 LYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 505



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 6/142 (4%)

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
           +G   PDAF      +Y  +I GL + GK  +A ++   +   G++PN +TYN  I    
Sbjct: 9   EGAPPPDAF------SYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHV 62

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
               ++    L   M   G  PN V +  L+    R     +   L+  M   ++ P   
Sbjct: 63  KGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGF 122

Query: 234 ILSIIVDLLVKNEISLNSIPQF 255
             SI+ D L +   S   +  F
Sbjct: 123 TYSILFDGLTRTGESRTMLSLF 144


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYN +I+GLCK   V KA++L ++M+   ++P+V T+N+LI  +  A    +   
Sbjct: 401 RPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFT 460

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +  +M  +G++SDV++F  ++   CKN K+ EA  +LD MI   V P         DA+ 
Sbjct: 461 VLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI 520

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           E                     +IV Y  L+ GLC+  ++  A EL  +L   GL P+VV
Sbjct: 521 ESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 580

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +YN  I A CN    DKA +L  +M   G+ P    + TL+ +         +  L + M
Sbjct: 581 SYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 640

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
             +NV P +SI  I+VD  V+ E
Sbjct: 641 LHKNVEPSSSIYGIMVDAYVRCE 663



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN ++ GLC+ G +D+ + L  +M   ++ P+  TY+ L  G     +      
Sbjct: 261 KPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLS 320

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF E + +G+     T +++++ LCK+ K+ +A ++L++++  G+ P        V Y  
Sbjct: 321 LFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVP------TTVIYNT 374

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C++  L+ A  + + +    + P+ +TYN  I+ LC  E + KA DL ++ME  G
Sbjct: 375 LINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSG 434

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P+   F TL+ ++    +  K   +L  M ++ +         +V    KN
Sbjct: 435 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN 487



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +I GL + G    A ++F +M D  + PN +TYN++I G     D      L
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 251

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M+  G + ++VT+NV++  LC+  +MDE   L+D M    + PD F           
Sbjct: 252 RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 311

Query: 124 -----------------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             + + AY C  L++GLCK GK+  A ++ + L   GL+P  V 
Sbjct: 312 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 371

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I+  C    +  A  +F  M+ + + P+ + +  L+    +    +K  +L+  M+
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 225 KRNVMPYASILSIIVD 240
           K  V P     + ++D
Sbjct: 432 KSGVDPSVETFNTLID 447



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 114/216 (52%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + +++ +++   CK G + +A  +   M  +++ PN   YNS+I  +  + D  +A  
Sbjct: 471 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFL 530

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M + G+ + +VT+N+++  LC++ ++DEA  L+  +   G+RPD      +V+Y  
Sbjct: 531 LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPD------VVSYNT 584

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I   C  G    A EL Q + + G+ P + TY+  + AL +  ++     L+  M  K 
Sbjct: 585 IISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKN 644

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           V P+  I+  ++ +++R    SKV  L + M ++ +
Sbjct: 645 VEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 6/181 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   YN+IID   + G  ++A  L  +MK+  ++ ++VTYN L+ G C ++  +EAE L
Sbjct: 507 PNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 566

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              + ++GL+ DVV++N I+   C     D+A  LL  M + G+RP       +  Y  L
Sbjct: 567 IYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRP------TLRTYHTL 620

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  L   G++ +   L Q +    + P+   Y I + A    E   K   L  +M  KG+
Sbjct: 621 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680

Query: 194 A 194
           A
Sbjct: 681 A 681



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 8/209 (3%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P++ + N L+    +     +    F  ++  G + D   +N ++        +D A  +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 109 LDLM--IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
           +  M   +G   PDAF      +Y  +I GL + GK  +A ++   +   G++PN +TYN
Sbjct: 180 VRRMGRSEGAPPPDAF------SYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYN 233

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             I        ++    L   M   G  PN V +  L+    R     +   L+  M   
Sbjct: 234 TMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASH 293

Query: 227 NVMPYASILSIIVDLLVKNEISLNSIPQF 255
           ++ P     SI+ D L +   S   +  F
Sbjct: 294 SMFPDGFTYSILFDGLTRTGESRTMLSLF 322



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNTII   C +G  DKA EL  +M    I P + TY++L+     A   ++ E 
Sbjct: 576 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMEC 635

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           L+ +M+ + ++     + +++D   +     +   L   M + G+  D
Sbjct: 636 LYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CKEG  + A E+  +M    + PNVV YN+++ G C A+   +AE
Sbjct: 262 CTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAE 321

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +    D VTFN+++D  C+N  +D    LL+ M++ G  PD      ++ Y 
Sbjct: 322 ELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPD------VITYT 375

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L +++   G  PN ++Y I +  LC+ E+   A +L   M  +
Sbjct: 376 TVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQ 435

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  PN V F T++    +K    + IELL+ M      P     S ++D L K
Sbjct: 436 GCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGK 488



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG +D+A  L   M      PN ++Y  ++ G C      +AE
Sbjct: 367 CMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAE 426

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+ +G   + VTFN I++ LCK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 427 ELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPD------LISYS 480

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK + A EL   +   G+ PNV+TY+    AL  + ++DK   +F +++  
Sbjct: 481 TVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDA 540

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +  + V++  ++ S  ++ ET   I+ L  M     MP  S  + ++  L  
Sbjct: 541 TIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLAS 593



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 8/219 (3%)

Query: 12  CKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           CKPNT++Y  ++ GLC  E +VD A+EL  +M  +   PN VT+N++I+  C      +A
Sbjct: 402 CKPNTISYTIVLKGLCSTERWVD-AEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQA 460

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  +M+  G   D+++++ ++D L K  K +EA  LL++MI  G+ P      N++ Y
Sbjct: 461 IELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITP------NVITY 514

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +   L + G++    ++  ++  A +  + V YN  I +LC   + D A D    M  
Sbjct: 515 SSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVS 574

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            G  PN   +T L+     +    +  +LL  +  R  +
Sbjct: 575 NGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSRRAV 613



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 16/229 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P    Y+ II+  C+ G    A  +   +  +    +    N +I+  C     +E  
Sbjct: 147 CVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGL 206

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI----------QGGVRPDA 121
            +  ++   G ++D+V++N ++  LC  ++  +   L+D M+          Q G  PD 
Sbjct: 207 EMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPD- 265

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                I  Y  +IDG+CK G  + A E+   +   GL PNVV YN  +  +C+ ++ +KA
Sbjct: 266 -----IRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKA 320

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +L  +M  K    + V F  L+  F +     +VIELL  M +   MP
Sbjct: 321 EELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMP 369



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 16/237 (6%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM- 78
           N +I+ +C +G VD+  E+  ++       ++V+YN+++ G C A    + E L  EM+ 
Sbjct: 190 NLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVK 249

Query: 79  ---------DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
                      G   D+  +  I+D +CK    + A  +L  M   G++P      N+V 
Sbjct: 250 VHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKP------NVVC 303

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++ G+C   + + A EL   + +     + VT+NI +   C +  +D+  +L   M 
Sbjct: 304 YNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 363

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             G  P+ + +TT++  F ++    + + LL++M      P     +I++  L   E
Sbjct: 364 EHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTE 420



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/267 (19%), Positives = 93/267 (34%), Gaps = 71/267 (26%)

Query: 50  NVVTYNSLIHGFCYAND------------------------------GNEAEYLFI--EM 77
            VV YN+++ G+C                                  G  A+ L +  EM
Sbjct: 83  GVVDYNAMVAGYCRVGQVEAARRLAAAVPVPPNAYTYFPVVRGLCGRGRIADALAVLDEM 142

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------------- 121
             R        ++VI++  C++     A R+L+ +   G   D                 
Sbjct: 143 TSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCV 202

Query: 122 -------------FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA----------GL 158
                         CE +IV+Y  ++ GLC   +  +  EL   + +           G 
Sbjct: 203 DEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGC 262

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P++  Y   I  +C +   + A+++   M   G+ PN V + T++      +   K  E
Sbjct: 263 TPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEE 322

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKN 245
           LL  M ++N        +I+VD   +N
Sbjct: 323 LLTEMYQKNCPLDDVTFNILVDFFCQN 349



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 12/139 (8%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
            + ++  LC   +  +A R LD          A     +V Y  ++ G C++G+++ AR 
Sbjct: 55  LSALIRSLCVAGRTADAVRALDA---------AGNAAGVVDYNAMVAGYCRVGQVEAARR 105

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           L+ ++    + PN  TY   +  LC   ++  A  +  +M  +   P   ++  ++ S  
Sbjct: 106 LAAAVP---VPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESAC 162

Query: 209 RKNETSKVIELLRSMDKRN 227
           R    S  + +L ++  + 
Sbjct: 163 RSGGYSSALRVLEALHAKG 181


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 119/231 (51%), Gaps = 8/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMK--DENINPNVVTYNSLIHGFCYANDGNEAE 71
           PNTVTY  +I GLC  G V++A  +  +MK       PNVVTY  LIHG C         
Sbjct: 194 PNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGM 253

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               EM+  G   +  T+  ++  LC+     EA  LL+ M+  G      CE+++V Y 
Sbjct: 254 EFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIG------CELDVVIYN 307

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK+G+L  ARE+   +   G+ P+V TY   I  LC+   +D+A  L  +M  K
Sbjct: 308 SLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAK 367

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G+ PN V +TTL+  F + + T   ++L+  M    +MP   I  I+   L
Sbjct: 368 GIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKILFKSL 418



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 99/199 (49%), Gaps = 6/199 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN VTY  +I GLC++G  +   E   +M      PN  TY +LIHG C      
Sbjct: 226 GNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFL 285

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM+  G + DVV +N ++D LCK  ++D A  +  LM++ GV PD F      
Sbjct: 286 EAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVF------ 339

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI GLC  G L  A  L Q +   G++PN VTY   I+     ++ D A  L  +M
Sbjct: 340 TYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEM 399

Query: 189 EVKGVAPNCVIFTTLMPSF 207
           +  G+ P   I+  L  S 
Sbjct: 400 KSNGLMPAGDIYKILFKSL 418



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 8/211 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + ++Y+  I+GLCK+G + +A E+F +M+++   P+  TYN LI+G C          L 
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  RG    VVT+  ++   C   ++D A  +LD M   G+ P      N V Y  LI
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITP------NTVTYTALI 203

Query: 135 DGLCKIGKLKNARELSQSLTRAG--LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            GLC  G+++ A  + + +   G    PNVVTY   IH LC     +   +   +M + G
Sbjct: 204 QGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISG 263

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             PN   +T L+    +K    +   LL  M
Sbjct: 264 CFPNNATYTALIHGLCQKGSFLEAAVLLNEM 294



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
           +DV++++  ++ LCK  ++ EA  +   M + G  PD+F       Y  LI+GLCK  +L
Sbjct: 89  TDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSF------TYNILINGLCKDAQL 142

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
           +    L   +   G  P VVTY   IH  C   ++D A D+  +ME +G+ PN V +T L
Sbjct: 143 EMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTAL 202

Query: 204 MPSFIRKNETSKVIELLRSMDKR------NVMPYASIL 235
           +       E  + I +L+ M  R      NV+ Y  ++
Sbjct: 203 IQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLI 240



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 67/115 (58%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N    + C+ + V YN++IDGLCK G +D A+E+ + M ++ + P+V TY SLI G C A
Sbjct: 292 NEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDA 351

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
              +EA  L  EM  +G+  + VT+  +++   +  + D A +L++ M   G+ P
Sbjct: 352 GLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMP 406



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
           + ++++Y   I+GLCK G++  A E+ + +   G  P+  TYNI I+ LC D Q++    
Sbjct: 88  DTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVS 147

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIV 239
           L  +M+ +G +P  V +TTL+  F         +++L  M+ R + P    Y +++  + 
Sbjct: 148 LMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLC 207

Query: 240 D 240
           D
Sbjct: 208 D 208


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V YNT+I G CK   V++  E+F +M    +  N VTY +LIHGF  A D + A+
Sbjct: 352 CFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 411

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  D++T+N+++D LC N  ++ A  + + M +  ++ D      IV Y 
Sbjct: 412 MVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLD------IVTYT 465

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+ LCK GK+++  +L  SL+  G+ PNVVTY   +   C     ++A  LF++M+  
Sbjct: 466 TMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKED 525

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  + +   EL++ M        AS   ++ ++L
Sbjct: 526 GPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNML 576



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TY+  I+  C+   +  A  +  +M      P++VT NSL++GFC+ N  +EA  L 
Sbjct: 109 NLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 168

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M++ G Q D VTF  ++  L ++ K  EA  L++ M+  G +PD      +V YG +I
Sbjct: 169 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD------LVTYGAVI 222

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G+   A  L   + +  +  +VV YN  I  LC  + MD A DLF  ME KG+ 
Sbjct: 223 NGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIK 282

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+   +  L+         S    LL  M ++N+ P     + ++D  VK
Sbjct: 283 PDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK 332



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 124/235 (52%), Gaps = 7/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY  +I+GLCK G  D A  L  +M+   I  +VV YN++I G C     ++A 
Sbjct: 211 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAF 270

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M  +G++ DV T+N ++  LC   +  +A+RLL  M++  + PD      +V + 
Sbjct: 271 DLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPD------LVFFN 324

Query: 132 CLIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            LID   K GKL  A +L   + ++    P+VV YN  I   C  +++++  ++F +M  
Sbjct: 325 ALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQ 384

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +G+  N V +TTL+  F +  +      + + M    V P     +I++D L  N
Sbjct: 385 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNN 439



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 5/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V YNTIIDGLCK   +D A +LF +M+ + I P+V TYN LI   C     ++A  
Sbjct: 247 EADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASR 306

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+++ +  D+V FN ++D   K  K+ EA +L D M++        C  ++VAY  
Sbjct: 307 LLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVK-----SKHCFPDVVAYNT 361

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  +++   E+ + +++ GL+ N VTY   IH        D A  +F  M   G
Sbjct: 362 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 421

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           V P+ + +  L+            + +   M KR++
Sbjct: 422 VHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDM 457



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT N++++G C    + +A  L  QM +    P+ VT+ +L+HG    N  +EA  L
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ +G Q D+VT+  +++ LCK  + D A  LL+ M +G +  D      +V Y  +
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEAD------VVIYNTI 256

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK   + +A +L   +   G+ P+V TYN  I  LCN  +   A  L  DM  K +
Sbjct: 257 IDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNI 316

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            P+ V F  L+ +F+++ +  +  +L   M K
Sbjct: 317 NPDLVFFNALIDAFVKEGKLVEAEKLYDEMVK 348



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 6/228 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A  LF  M      P++V ++ L+      N  +    L  +M + G+  ++ T+++
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
            ++  C+  ++  A  +L  M++ G  P      +IV    L++G C   ++  A  L  
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGP------SIVTLNSLLNGFCHGNRISEAVALVD 169

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  P+ VT+   +H L    +  +A  L   M VKG  P+ V +  ++    ++ 
Sbjct: 170 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 229

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           E    + LL  M+K  +     I + I+D L K +   ++   FN+ +
Sbjct: 230 EPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME 277



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY T++ G C++G  ++A  LF++MK++   PN  TYN+LI       D   +  
Sbjct: 493 KPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAE 552

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM   G   D  TF ++ + L   R
Sbjct: 553 LIKEMRSCGFAGDASTFGLVTNMLHDGR 580


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNT TYN +I GLCK+  V KA  L  +M +  ++P+++TYNSLIHG C  ND   A 
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAY 459

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M + GL  D  T++V +D LCK  +++EA  L D +   GV+       N V Y 
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKA------NEVIYT 513

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK+GK+  A  L + +     +PN  TYN+ I  LC +++M +A  L   M   
Sbjct: 514 ALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM 573

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           GV P  V +T L+   ++       +++   M      P
Sbjct: 574 GVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQP 612



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N V+Y  +I GLC+ G +++A +LF  M ++N  P V TY  LI+    +    EA 
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL 319

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM ++G + +V T+ V++D LCK  KMDEA ++L  M + G+ P      ++V Y 
Sbjct: 320 NLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIP------SVVTYN 373

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK G + +A E+   +      PN  TYN  I  LC   ++ KA  L   M  +
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLER 433

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++P+ + + +L+    + N+      LL  M++  ++P     S+ +D L K
Sbjct: 434 KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK 486



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 128/238 (53%), Gaps = 8/238 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N + EF    KP    YNTI+  L K   +D+ K ++L++ +  I+PN+ T+N++++G+C
Sbjct: 148 NADGEFKF--KPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYC 205

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
              +  EAE    +++  GL  D  T+  ++   C+N+ +D A  +  +M Q G      
Sbjct: 206 KIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG------ 259

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           C+ N V+Y  LI GLC+ G++  A +L   +T     P V TY + I+AL    +  +A 
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL 319

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +LF +M+ KG  PN   +T L+    ++N+  +  ++L  M ++ ++P     + ++D
Sbjct: 320 NLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALID 377



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 6/199 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V Y  +IDG CK G +D A  L  +M ++   PN  TYN LI G C      EA  
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+  G++  VVT+ +++ E+ K+   D A ++ + M+  G +PD      +  Y  
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPD------VCTYTA 619

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +      G L+   ++   +   G++P++VTY + I          +A D    M   G
Sbjct: 620 FLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTG 679

Query: 193 VAPNCVIFTTLMPSFIRKN 211
             P+  I + L+ +   +N
Sbjct: 680 CKPSLYIVSILIKNLSHEN 698



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 106/259 (40%), Gaps = 35/259 (13%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            C PN+ TYN +I+GLCKE  + +A  L  +M    + P VVTY  LI         + A
Sbjct: 539 ACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHA 598

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F  M+  G Q DV T+   +        ++E   ++  M + G+ PD      +V Y
Sbjct: 599 LKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD------LVTY 652

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK---------- 180
             LIDG  ++G    A +  + +   G  P++   +I I  L ++ +M +          
Sbjct: 653 TVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSV 712

Query: 181 -------------------AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
                              A  LF  M   G   +  I+  L+  F ++    +   L+ 
Sbjct: 713 SNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVH 772

Query: 222 SMDKRNVMPYASILSIIVD 240
            M +R + P   I + ++D
Sbjct: 773 HMKERGMSPSEDIYNSLLD 791



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 35/250 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA--- 70
           P+ VTY  +IDG  + G   +A +    M D    P++   + LI    + N   E    
Sbjct: 647 PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSE 706

Query: 71  ---------------------EY-----LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
                                EY     LF +M++ G   DV  +  ++   C+  +++E
Sbjct: 707 IGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEE 766

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           A  L+  M + G+ P          Y  L+D  CK+G    A  L  ++   GL+P + +
Sbjct: 767 AQGLVHHMKERGMSPSEDI------YNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLES 820

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y + +  L  +   +KA  +F  +   G   + V +  L+   ++++   +  EL+  M+
Sbjct: 821 YKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIME 880

Query: 225 KRNVMPYASI 234
           +++    A I
Sbjct: 881 EKDATAQADI 890



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 6/171 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           +N I+  L K   +DE   +   ++   + P      NI  +  +++G CKIG +  A  
Sbjct: 162 YNTILMSLSKFLLIDEMKTVYLELLNNQISP------NIYTFNAMVNGYCKIGNVVEAEL 215

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
            +  + +AGL P+  TY   I   C ++ +D A+++FL M  KG   N V +T L+    
Sbjct: 216 YASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLC 275

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
                ++ ++L   M + N  P     ++++  L  +   + ++  FN  K
Sbjct: 276 EAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMK 326



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A +LF +M +     +V  Y +LI GFC      EA+ L   M +RG+      +N ++D
Sbjct: 732 ALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLD 791

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             CK     EA RL+D M++ G+ P       + +Y  L+ GL   G  + A+ +   L 
Sbjct: 792 CCCKLGVYAEAVRLVDAMVENGLLP------LLESYKLLVCGLYIEGSNEKAKAVFHGLL 845

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
             G   + V + + I  L   + +D+  +L   ME K       I    +      N T 
Sbjct: 846 SCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADIACAALMRLAAANSTK 905

Query: 215 KVIE 218
             +E
Sbjct: 906 GALE 909


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   YN +I GLCK G +D A+ +   M + +  P+V+TY SLI G C  N  +EA 
Sbjct: 123 CHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEAR 182

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M + GL  D V +N +++ LCK  +++E ++LL+ M++ G  PD F      +Y 
Sbjct: 183 KLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTF------SYN 236

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++  LC+ GK + A ++ + +      P+VVTYN  +   C   +MD+A  L  DM  +
Sbjct: 237 TVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGR 296

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             AP  + +TTL+  F R +  +    ++  M K  + P     + ++D L K
Sbjct: 297 RCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCK 349



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 10/225 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN+++DG CK   +D+A+ L   M      P V+TY +LI GF  A+   +A 
Sbjct: 263 CGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAY 322

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M   G+  D+VT+N ++D LCK  K++EA  LL++M++    PD      +V Y 
Sbjct: 323 RVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPD------VVTYS 376

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++GLCK+GK+ +AR L + +   G  PN+VT+N  I   C   ++D+ H +   M+  
Sbjct: 377 ILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEV 436

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLR-SMDKRNVMPYASIL 235
              P+ V ++TL+  + + N       +L  S DK +   Y+S+L
Sbjct: 437 SCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKAS---YSSML 478



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 132/254 (51%), Gaps = 23/254 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN ++DGLCK G +++A EL   M +++  P+VVTY+ L++G C     ++A  L
Sbjct: 335 PDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLL 394

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
              M++RG Q ++VTFN ++D  CK  K+DE  ++L+LM +    P         D +C+
Sbjct: 395 LEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCK 454

Query: 125 INIV--------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170
            N +              +Y  +++GLC  GK++ A+E+   +T+ G  P    Y + I 
Sbjct: 455 ANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIG 514

Query: 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            LC+ E+ D+A  +   M  +G  PN   ++ L+    +       I +L  M ++  +P
Sbjct: 515 GLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVP 574

Query: 231 YASILSIIVDLLVK 244
             +  + ++D   K
Sbjct: 575 DVATYTSLIDGFCK 588



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 124/251 (49%), Gaps = 35/251 (13%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VT+NT+IDG CK G VD+  ++   MK+ +  P+VVTY++LI G+C AN   +A 
Sbjct: 403 CQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAF 462

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            +       G+  D  +++ +++ LC   K++EA  ++DLM + G  P +          
Sbjct: 463 AIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGL 516

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               CE N+  Y  LI+GLCK  ++++A  +   +   G +P+V
Sbjct: 517 CDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDV 576

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            TY   I   C   +MD A+  F  M   G  P+ + +  L+  F +     K IE+++ 
Sbjct: 577 ATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQL 636

Query: 223 MDKRNVMPYAS 233
           M ++   P A+
Sbjct: 637 MLEKGCNPDAA 647



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 108/194 (55%), Gaps = 6/194 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y+++++GLC  G V++A+E+   M  +   P    Y  +I G C    G+EA  +
Sbjct: 469 PDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKM 528

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M +RG + ++ T++++++ LCK +++++A  +LD+M++ G  PD      +  Y  L
Sbjct: 529 LQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPD------VATYTSL 582

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CKI K+  A +  +++  +G  P+ + YNI I   C    ++KA ++   M  KG 
Sbjct: 583 IDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGC 642

Query: 194 APNCVIFTTLMPSF 207
            P+   + +LM S 
Sbjct: 643 NPDAATYFSLMRSL 656



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 8/211 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY  +I G  + G      E+  +M     +P+V+T+N+++  +C   D + A  
Sbjct: 21  KPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALS 80

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F   M         T+ +++  LC+ +++DEA +LLD MIQ    PDA        Y C
Sbjct: 81  HFRGKM--WCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDA------AVYNC 132

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK+GK+  AR + + +     +P+V+TY   I   C    +D+A  L   M+  G
Sbjct: 133 LIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESG 192

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           + P+ V +  L+    ++N+  +V +LL  M
Sbjct: 193 LTPDTVAYNALLNGLCKQNQLEEVSKLLEEM 223



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P +  Y  II GLC     D+A ++   M +    PN+ TY+ LI+G C      +A 
Sbjct: 502 CPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAI 561

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+++G   DV T+  ++D  CK  KMD A +    M   G  PD       +AY 
Sbjct: 562 NVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDK------LAYN 615

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            LI G C+ G ++ A E+ Q +   G  P+  TY   + +L
Sbjct: 616 ILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 48  NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
            P+  TY +LI GF  A +      +  EM+ R    DV+T N I+   C+   +D A  
Sbjct: 21  KPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALS 80

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
                     R   +C      Y  LI GLC+  ++  A +L   + +    P+   YN 
Sbjct: 81  HF--------RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNC 132

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I  LC   ++D A ++   M  +   P+ + +T+L+    + N   +  +L+  M +  
Sbjct: 133 LIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESG 192

Query: 228 VMP 230
           + P
Sbjct: 193 LTP 195


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 132/248 (53%), Gaps = 6/248 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ ++Y+T+ID LCK   VDKA E F +M+     PNVVTY+SLI G C  +  +E  
Sbjct: 216 CEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECL 275

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L + M ++G   +++ FN ++  L KN + ++A +  + +++ G +P      N+V Y 
Sbjct: 276 ELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKP------NVVTYN 329

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             + GLCK G++  A  +   +  + + P+V+TY+  I   C   +MDKA D+F  M V 
Sbjct: 330 VAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVH 389

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
              P+ V F TL+  F    ++ +   +   M     +P     ++++D +   +   ++
Sbjct: 390 ECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESA 449

Query: 252 IPQFNRQK 259
           +  +++ K
Sbjct: 450 LEIYHKMK 457



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 134/277 (48%), Gaps = 43/277 (15%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            R   V C PN VTY+++IDGLCK     +  EL L MK++    N++ +N+++H   + 
Sbjct: 244 KRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHAL-WK 302

Query: 65  NDGNEAEYLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           ND  E    F E ++  G + +VVT+NV +  LCK  ++DEA R+L  M++  V PD   
Sbjct: 303 NDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPD--- 359

Query: 124 EINIVAYGCLIDGLCKIGKL--------------------------------KNARE--- 148
              ++ Y  +IDG CK G++                                K +RE   
Sbjct: 360 ---VITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFR 416

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           + + +  AG +P + TYN+ +  +C  + ++ A +++  M+ K   P+C  +  L+    
Sbjct: 417 VHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLC 476

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           R     +  E L  M+  NV+P  +I   +V++L K 
Sbjct: 477 RARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQ 513



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E   +C PN + Y T+I+G CK G VD+A EL  +MK+  +  +V+ +++LI G C    
Sbjct: 102 ELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGR 161

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            +EA   F  M +     +V+T+N +++ LCK  ++DEA  L D M +        CE +
Sbjct: 162 IDEALEQFKSMGEE-CSPNVITYNTVVNGLCKANRIDEALELFDDM-EKRYEASHGCEPD 219

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +++Y  +ID LCK  ++  A E  + +   G  PNVVTY+  I  LC  ++  +  +L L
Sbjct: 220 VISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLL 279

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE----LLRSMDKRNVMPY 231
            M+ KG   N + F  ++ +  + +E  K  +    LL+S  K NV+ Y
Sbjct: 280 HMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTY 328



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN  + GLCK G VD+A  + L+M +  + P+V+TY+S+I GFC A   ++A+ 
Sbjct: 322 KPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADD 381

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  MM        VTF  ++    +++K  EA R+ + M+  G  P       +  Y  
Sbjct: 382 VFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIP------GLQTYNV 435

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D +C    +++A E+   + R    P+  TY   I  LC   ++D+A +    ME   
Sbjct: 436 LMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADN 495

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           V PN  I   L+    ++ E  +   +L ++ +    P      I+V+ L
Sbjct: 496 VVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEEL 545



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 113/218 (51%), Gaps = 12/218 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T   +++   K    ++A  L  +  +    PN + Y ++I+GFC A   ++A  L 
Sbjct: 75  NAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELL 134

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM +RG++ DV+  + ++  LC+  ++DEA      M +        C  N++ Y  ++
Sbjct: 135 DEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-------CSPNVITYNTVV 187

Query: 135 DGLCKIGKLKNARELSQSLTR-----AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +GLCK  ++  A EL   + +      G  P+V++Y+  I ALC  +++DKA++ F  M 
Sbjct: 188 NGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMR 247

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
             G APN V +++L+    + +  S+ +ELL  M ++ 
Sbjct: 248 AVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKG 285



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 18/249 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY  +I  LC+   VD+AKE    M+ +N+ PN    ++L+   C   + +EA  
Sbjct: 462 QPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACS 521

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   +++ G Q    TF ++++EL   +K + A++LL        R   F   +   Y  
Sbjct: 522 VLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLL--------RSPGFV-ADAATYSL 572

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +  +CK GK   A E+ + +   G+ P+  TY   + +LC  ++++ A   F  M  +G
Sbjct: 573 CVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRG 632

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV---------DLLV 243
            AP  V +T L+      +   +   +  +M      P A  +  +          DLLV
Sbjct: 633 CAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQDLLV 692

Query: 244 KNEISLNSI 252
           +  I   +I
Sbjct: 693 RQRIMTMAI 701



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 35/198 (17%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC-------- 123
           G Q +  T  V+++   K ++ +EA RLL   ++    P         + FC        
Sbjct: 71  GFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQA 130

Query: 124 ------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
                       +++++ +  LI GLC+ G++  A E  +S+      PNV+TYN  ++ 
Sbjct: 131 FELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPNVITYNTVVNG 189

Query: 172 LCNDEQMDKAHDLFLDMEVK-----GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           LC   ++D+A +LF DME +     G  P+ + ++T++ +  +     K  E  + M   
Sbjct: 190 LCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAV 249

Query: 227 NVMPYASILSIIVDLLVK 244
              P     S ++D L K
Sbjct: 250 GCAPNVVTYSSLIDGLCK 267


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y++II GLC +G  D   ++  +M   NI PNVVT+++LI  F       EA+ 
Sbjct: 276 KADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKE 335

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+ RG+  D +T++ ++D  CK  ++ EA ++LDLM+  G      CE NIV Y  
Sbjct: 336 LYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKG------CEPNIVTYSI 389

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+  CK  ++ N   L   ++  GL+ + VTYN  +   C   +++ A +LF +M  +G
Sbjct: 390 LINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRG 449

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           V P+ V +  L+       E  K +E+   M K  ++    I +II+
Sbjct: 450 VPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIII 496



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y+ +ID LCK+G +D A  LF +M+ + I  +VV Y+S+I G C     ++   
Sbjct: 241 KASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAK 300

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+ R +  +VVTF+ ++D   K  K+ EA  L + M+  G+ PD       + Y  
Sbjct: 301 MLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDT------ITYSS 354

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK  +L  A ++   +   G  PN+VTY+I I++ C  +++D    LF ++  KG
Sbjct: 355 LIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKG 414

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V + TL+  F +  + +   EL + M  R V P      I++D L  N
Sbjct: 415 LVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDN 467



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTY+ +I+  CK   VD    LF ++  + +  + VTYN+L+ GFC +   N A+
Sbjct: 380 CEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAK 439

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ RG+   VVT+ +++D LC N ++ +A  + + M +  +       + I  Y 
Sbjct: 440 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMI------LGIGIYN 493

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C   K+ +A  L  SL+  G+ P+V+TYN+ I  LC    + +A  LF  M+  
Sbjct: 494 IIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKED 553

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G AP+   +  L+ + +  +     +EL+  M  R     AS + ++V +L
Sbjct: 554 GCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVVML 604



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 136/263 (51%), Gaps = 41/263 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---------- 62
           +PNT+T++T+I+G C EG V +A  L  +M +    PNVVT N+LI+G C          
Sbjct: 136 EPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALV 195

Query: 63  -------YANDGNEAEY------------------LFIEMMDRGLQSDVVTFNVIMDELC 97
                  Y  + NE  Y                  LF +M +R +++ VV +++++D LC
Sbjct: 196 LIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLC 255

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K+  +D+A  L + M   G++ D      +VAY  +I GLC  G+  +  ++ + +    
Sbjct: 256 KDGNLDDALSLFNEMEMKGIKAD------VVAYSSIIGGLCNDGRWDDGAKMLREMIGRN 309

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           ++PNVVT++  I     + ++ +A +L+ +M  +G+AP+ + +++L+  F ++N   +  
Sbjct: 310 IIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEAN 369

Query: 218 ELLRSMDKRNVMPYASILSIIVD 240
           ++L  M  +   P     SI+++
Sbjct: 370 QMLDLMVSKGCEPNIVTYSILIN 392



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 125/242 (51%), Gaps = 6/242 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T N +I+  C++  +  A  +  +       PN +T+++LI+GFC     +EA  L 
Sbjct: 103 NMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALV 162

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M++   + +VVT N +++ LC   ++ EA  L+D M++ G      CE N + YG ++
Sbjct: 163 DRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYG------CEANEITYGPVL 216

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           + +CK G    A +L + +    +  +VV Y+I I +LC D  +D A  LF +ME+KG+ 
Sbjct: 217 NRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIK 276

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
            + V +++++             ++LR M  RN++P     S ++D+ VK    L +   
Sbjct: 277 ADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKEL 336

Query: 255 FN 256
           +N
Sbjct: 337 YN 338



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           V++A +LF  M      P+++ ++ L        + +       EM   G++ ++ T N+
Sbjct: 50  VNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNI 109

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C+ RK+  A  ++   ++ G  P      N + +  LI+G C  G++  A  L  
Sbjct: 110 MINCFCRKRKLLFAFSVVGRALKFGFEP------NTITFSTLINGFCLEGRVSEAVALVD 163

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +      PNVVT N  I+ LC   ++ +A  L   M   G   N + +  ++    +  
Sbjct: 164 RMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSG 223

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
            T+  ++L R M++R++       SI++D L K+    +++  FN
Sbjct: 224 NTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFN 268



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYN +I GLCK+G + +A  LF +MK++   P+  TYN LI      +    +  
Sbjct: 521 KPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVE 580

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM  RG  +D  T  +++  L   R
Sbjct: 581 LIEEMKMRGFAADASTIKMVVVMLSDGR 608


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +   Y+ ++DGLCK+G V +A  LF QM  + I P++ TYN LIHG C  +   EA 
Sbjct: 219 CNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAA 278

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM +G+  DV TFNVI     K   +  A  +   M+  G+  D      +V Y 
Sbjct: 279 PLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHD------VVTYT 332

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I   C + ++K+A E+   +   G +PN+VTY   IH  C  + M+KA     +M   
Sbjct: 333 SIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNN 392

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ PN V ++TL+    +  +     EL   M K   +P     +II+D L K
Sbjct: 393 GLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFK 445



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 119/261 (45%), Gaps = 29/261 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY +II   C    +  A E+F  M  +   PN+VTY SLIHG+C   + N+A Y  
Sbjct: 327 DVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFL 386

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCEI 125
            EM++ GL  +VVT++ ++  +CK  K   A  L  +M + G  P         D   + 
Sbjct: 387 GEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKC 446

Query: 126 NIVAYGCLI--------------------DGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
           N  +    +                    DG+C  GKL +A EL   L+  G+  +VVTY
Sbjct: 447 NFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTY 506

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           NI I  LC +  +D A DL + ME  G  PN   +   +   +R+ + SK  + L  M  
Sbjct: 507 NIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKD 566

Query: 226 RNVMPYASILSIIVDLLVKNE 246
           +     A+    +++    N+
Sbjct: 567 KGFQADATTTKFLINYFSANK 587



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 42/244 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY ++I G C+   ++KA     +M +  ++PNVVT+++LI G C A     A+
Sbjct: 359 CLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAK 418

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDEL----------------------------------- 96
            LF+ M   G   ++ T  +I+D L                                   
Sbjct: 419 ELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGM 478

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C + K+++A  L   +   GV+      I++V Y  +I GLCK G L +A +L   +   
Sbjct: 479 CSSGKLNDALELFSYLSSKGVK------IDVVTYNIMIKGLCKEGLLDDAEDLLMKMEEN 532

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  PN  TYN+ +  L    Q+ K+    + M+ KG   +    T  + ++   N+ ++ 
Sbjct: 533 GCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQADATT-TKFLINYFSANKENRA 591

Query: 217 IELL 220
           +E+ 
Sbjct: 592 LEVF 595



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N +   + K      A  L   M    + P V T N +I+  C  +       +
Sbjct: 81  PCVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCRLSHAVFGFSV 140

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G++  +VTFN I++ LC    + +A R +D +   G   D++        G +
Sbjct: 141 LGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSY------TCGAI 194

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            +GLCK+G    A    + +       +V  Y+  +  LC D  + +A +LF  M  KG+
Sbjct: 195 TNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGI 254

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   +  L+      +   +   LL +M ++ +MP     ++I     K
Sbjct: 255 QPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFK 305



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 4/102 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VTYN +I GLCKEG +D A++L ++M++    PN  TYN  + G       +++  
Sbjct: 500 KIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLLRRYQISKSTK 559

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
             + M D+G Q+D  T   +++    N++     R L++ +Q
Sbjct: 560 YLMFMKDKGFQADATTTKFLINYFSANKE----NRALEVFLQ 597


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V YN IID +CK   V+ A +L+ QM  + I P+V TYN+LI GF   +  N
Sbjct: 194 GKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLN 253

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  LF +M    +  +V TFN+++D  CK  K+++A  +L +M++  ++PD      +V
Sbjct: 254 YAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPD------VV 307

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C I K+  A+++  S+   G++ NV  Y   ++  C  + +D+A +LF +M
Sbjct: 308 TYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEM 367

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             + + PN V +++L+    +       ++L+  M  R   P     S I+D L KN 
Sbjct: 368 RCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNH 425



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 120/229 (52%), Gaps = 12/229 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           MA+G    GV+   N   Y T+++G CK   VD+A  LF +M+   I PNVVTY+SLI G
Sbjct: 332 MASG----GVIA--NVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDG 385

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C       A  L  EM DRG   ++VT++ I+D LCKN  +D+A  LL  +   G+RPD
Sbjct: 386 LCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPD 445

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            +       Y  LI GLC+ G+L++A+ + + L   G   +V  Y + I   C+    DK
Sbjct: 446 MY------TYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDK 499

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           A  L   ME  G  PN   +  ++ S   K+E     +LLR M  R ++
Sbjct: 500 ALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGLL 548



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 7/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYN+++DG C    V+KAK++F  M    +  NV  Y ++++GFC     +EA  
Sbjct: 303 KPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAIN 362

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  R +  +VVT++ ++D LCK  ++  A +L+D M   G  P      NIV Y  
Sbjct: 363 LFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPP------NIVTYSS 416

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D LCK   +  A  L  +L   G+ P++ TY I I  LC   +++ A ++F D+ VKG
Sbjct: 417 ILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKG 476

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS-IIVDLLVKNE 246
              +   +T ++  F  K    K + LL  M+    +P A     +I+ L  K+E
Sbjct: 477 YNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDE 531



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T  +N I+  L K      A  L  QM+   I  +  T+N LI+ F      + +  +
Sbjct: 59  PPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSI 118

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +++ +G     +TFN ++  LC    + +A    D ++  G   D       V+YG L
Sbjct: 119 FAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQ------VSYGTL 172

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+G++  A +L + +    + PN V YN+ I  +C  + ++ A DL+  M  K +
Sbjct: 173 INGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRI 232

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   +  L+  F   ++ +  I+L   M K N+ P     +I+VD   K
Sbjct: 233 CPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCK 283



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +T+NT+I GLC +G + +A     ++  +  + + V+Y +LI+G C       A  L
Sbjct: 129 PTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQL 188

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +  + +Q + V +N+I+D +CK + +++A  L   M+   + PD F       Y  L
Sbjct: 189 LKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVF------TYNAL 242

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G   + KL  A +L   + +  + PNV T+NI +   C + +++ A  +   M    +
Sbjct: 243 ISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDI 302

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V + +LM  +   N+ +K  ++  SM    V+    I + +V+   K
Sbjct: 303 KPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCK 353



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 6/159 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           FN I+  L K +    A  L   M   G+  D F       +  LI+   ++G    +  
Sbjct: 64  FNKILSSLVKAKHHSTALSLHQQMELNGIESDFF------TFNILINCFSQLGLNSLSFS 117

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           +   + + G  P  +T+N  I  LC    + +A      +  +G   + V + TL+    
Sbjct: 118 IFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLC 177

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +    +  ++LL+ +D + V P A + ++I+D + K ++
Sbjct: 178 KVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKL 216


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  143 bits (360), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YNTIIDG CK G V+ A ELF +M+ + +  + VTYNSL+ G C +   ++A  
Sbjct: 171 RPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAAR 230

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  +V+TF  ++D   K  K  EA +L + M +  V PD F       Y  
Sbjct: 231 LMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVF------TYNS 284

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLC  G++  A+++   +   G +P+VVTYN  I+  C  +++D+   LF +M  +G
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG 344

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASIL 235
           +  + + + T++  + +        E+   MD R N+  Y+ +L
Sbjct: 345 LVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILL 388



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 130/243 (53%), Gaps = 26/243 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +T+  +ID   KEG   +A +L+ +M    ++P+V TYNSLI+G C     +EA+ +
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV---------------- 117
              M+ +G   DVVT+N +++  CK++++DE T+L   M Q G+                
Sbjct: 302 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ 361

Query: 118 --RPDAFCEI--------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
             RPDA  EI        NI  Y  L+ GLC   +++ A  L +++ ++ +  ++ TYNI
Sbjct: 362 AGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNI 421

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            IH +C    ++ A DLF  +  KG+ P+ V +TT++  F RK +  K   L R M +  
Sbjct: 422 VIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481

Query: 228 VMP 230
           ++P
Sbjct: 482 LLP 484



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 106/184 (57%), Gaps = 9/184 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+I+G CK   VD+  +LF +M    +  + +TYN++I G+  A   + A+
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 369

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M  R    ++ T+++++  LC N ++++A  L + M +  +      E++I  Y 
Sbjct: 370 EIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEI------ELDITTYN 420

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+CKIG +++A +L +SL+  GL P+VV+Y   I   C   Q DK+  L+  M+  
Sbjct: 421 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 480

Query: 192 GVAP 195
           G+ P
Sbjct: 481 GLLP 484



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 20/242 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++I+G C+   V  A +L  +M++    P+VV YN++I G C     N+A  
Sbjct: 136 EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVE 195

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M   G+++D VT+N ++  LC + +  +A RL+  M+   + P      N++ +  
Sbjct: 196 LFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP------NVITFTA 249

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID   K GK   A +L + +TR  + P+V TYN  I+ LC   ++D+A  +   M  KG
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             P+ V + TL+  F +     +  +L R M +R               LV + I+ N+I
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG--------------LVGDTITYNTI 355

Query: 253 PQ 254
            Q
Sbjct: 356 IQ 357



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 100/208 (48%), Gaps = 6/208 (2%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           +LF +M      P++V ++ ++     + + +    LF  M   G+  D+ ++N++++ L
Sbjct: 55  DLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCL 114

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C+  +   A  ++  M++ G  PD      +V    LI+G C+  ++ +A +L   +   
Sbjct: 115 CRCSRFVIALSVVGKMMKFGYEPD------VVTVSSLINGFCQGNRVFDAIDLVSKMEEM 168

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+VV YN  I   C    ++ A +LF  ME  GV  + V + +L+         S  
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
             L+R M  R+++P     + ++D+ VK
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVK 256



 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 137 LCKIGKLKNAR---ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           L KI K KN      L   +   G+  ++ +YNI I+ LC   +   A  +   M   G 
Sbjct: 76  LSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGY 135

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V  ++L+  F + N     I+L+  M++    P   I + I+D   K  +  +++ 
Sbjct: 136 EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVE 195

Query: 254 QFNRQK 259
            F+R +
Sbjct: 196 LFDRME 201


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  143 bits (360), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YNTIIDG CK G V+ A ELF +M+ + +  + VTYNSL+ G C +   ++A  
Sbjct: 112 RPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAAR 171

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  +V+TF  ++D   K  K  EA +L + M +  V PD F       Y  
Sbjct: 172 LMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVF------TYNS 225

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLC  G++  A+++   +   G +P+VVTYN  I+  C  +++D+   LF +M  +G
Sbjct: 226 LINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG 285

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASIL 235
           +  + + + T++  + +        E+   MD R N+  Y+ +L
Sbjct: 286 LVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILL 329



 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 130/243 (53%), Gaps = 26/243 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +T+  +ID   KEG   +A +L+ +M    ++P+V TYNSLI+G C     +EA+ +
Sbjct: 183 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 242

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV---------------- 117
              M+ +G   DVVT+N +++  CK++++DE T+L   M Q G+                
Sbjct: 243 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ 302

Query: 118 --RPDAFCEI--------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
             RPDA  EI        NI  Y  L+ GLC   +++ A  L +++ ++ +  ++ TYNI
Sbjct: 303 AGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNI 362

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            IH +C    ++ A DLF  +  KG+ P+ V +TT++  F RK +  K   L R M +  
Sbjct: 363 VIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 422

Query: 228 VMP 230
           ++P
Sbjct: 423 LLP 425



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 106/184 (57%), Gaps = 9/184 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+I+G CK   VD+  +LF +M    +  + +TYN++I G+  A   + A+
Sbjct: 251 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 310

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M  R    ++ T+++++  LC N ++++A  L + M +  +      E++I  Y 
Sbjct: 311 EIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEI------ELDITTYN 361

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+CKIG +++A +L +SL+  GL P+VV+Y   I   C   Q DK+  L+  M+  
Sbjct: 362 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 421

Query: 192 GVAP 195
           G+ P
Sbjct: 422 GLLP 425



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 20/242 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++I+G C+   V  A +L  +M++    P+VV YN++I G C     N+A  
Sbjct: 77  EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVE 136

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M   G+++D VT+N ++  LC + +  +A RL+  M+   + P      N++ +  
Sbjct: 137 LFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP------NVITFTA 190

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID   K GK   A +L + +TR  + P+V TYN  I+ LC   ++D+A  +   M  KG
Sbjct: 191 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 250

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             P+ V + TL+  F +     +  +L R M +R               LV + I+ N+I
Sbjct: 251 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG--------------LVGDTITYNTI 296

Query: 253 PQ 254
            Q
Sbjct: 297 IQ 298



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 95/196 (48%), Gaps = 6/196 (3%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P++V ++ ++     + + +    LF  M   G+  D+ ++N++++ LC+  +   A  +
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           +  M++ G  PD      +V    LI+G C+  ++ +A +L   +   G  P+VV YN  
Sbjct: 68  VGKMMKFGYEPD------VVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTI 121

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I   C    ++ A +LF  ME  GV  + V + +L+         S    L+R M  R++
Sbjct: 122 IDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI 181

Query: 229 MPYASILSIIVDLLVK 244
           +P     + ++D+ VK
Sbjct: 182 VPNVITFTAVIDVFVK 197



 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 137 LCKIGKLKNAR---ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           L KI K KN      L   +   G+  ++ +YNI I+ LC   +   A  +   M   G 
Sbjct: 17  LSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGY 76

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V  ++L+  F + N     I+L+  M++    P   I + I+D   K  +  +++ 
Sbjct: 77  EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVE 136

Query: 254 QFNRQK 259
            F+R +
Sbjct: 137 LFDRME 142


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TY+ +ID  C+ G +D A   F +M  + I   V  YNSLI+G C   D + AE 
Sbjct: 397 RPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAES 456

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LFIEM ++G++    TF  ++   CK+ ++ +A +L + MI  G+ P      N+  +  
Sbjct: 457 LFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITP------NVYTFTA 510

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC   K+  A EL   L    + P  VTYN+ I   C D ++DKA +L  DM  KG
Sbjct: 511 LISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKG 570

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASIL 235
           + P+   +  L+         SK  + +  + K+NV    M Y+++L
Sbjct: 571 LVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALL 617



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P     + ++DGL K+G +D A EL +++      PN+  YN+LI+  C   D ++AE L
Sbjct: 328 PTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELL 387

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  M    L+ + +T+++++D  C++ ++D A    D MIQ G+         + AY  L
Sbjct: 388 YSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGE------TVYAYNSL 441

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK G L  A  L   +T  G+ P   T+   I   C D Q+ KA  L+  M   G+
Sbjct: 442 INGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGI 501

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN   FT L+      N+ ++  EL   + +R + P     +++++
Sbjct: 502 TPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIE 548



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P   T+ ++I G CK+  V KA +L+ +M D  I PNV T+ +LI G C  N   EA  
Sbjct: 467 EPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASE 526

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF E+++R ++   VT+NV+++  C++ K+D+A  LL+ M Q G+ PD +       Y  
Sbjct: 527 LFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTY------TYRP 580

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  G++  A++    L +  +  N + Y+  +H  C + ++ +A     +M  +G
Sbjct: 581 LISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRG 640

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V    L+   +++ +     +LL+ M  + + P   I + ++D   K
Sbjct: 641 INMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSK 692



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 7/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +++GLCK G +D+A  LF +M+  N+ PN +TY   +       +  EA 
Sbjct: 711 CFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAI 770

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+ +GL ++ VT N+I+   CK  +  EAT++L  M + G+ PD       V Y 
Sbjct: 771 GLHHAML-KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDC------VTYS 823

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI   C+ G +  + +L  ++   GL P++V YN+ I+  C + ++DKA +L  DM  +
Sbjct: 824 TLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRR 883

Query: 192 GVAPN 196
           G+ P+
Sbjct: 884 GIIPD 888



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y ++ID   KEG   KA E +  M  E   PNVVTY +L++G C A + + A  
Sbjct: 677 RPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGL 736

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M    +  + +T+   +D L K   M EA  L   M++G +        N V +  
Sbjct: 737 LFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLL-------ANTVTHNI 789

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G CK+G+   A ++   +T  G+ P+ VTY+  I+  C    +  +  L+  M  +G
Sbjct: 790 IIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRG 849

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+ V +  L+       E  K  EL   M +R ++P
Sbjct: 850 LEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIP 887



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 109/211 (51%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T + ++  +C+     +AKE    M+    + ++VTYN LIHG C  +  +EA  
Sbjct: 222 RPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVE 281

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   +  +GL +DVVT+  ++   C+ ++ +   +L+D M++ G  P         A   
Sbjct: 282 VKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTE------AAVSG 335

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGL K GK+ +A EL   + R G +PN+  YN  I++LC    +DKA  L+ +M +  
Sbjct: 336 LVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMN 395

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           + PN + ++ L+ SF R       I     M
Sbjct: 396 LRPNGITYSILIDSFCRSGRLDVAISYFDRM 426



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 42/253 (16%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N + Y+ ++ G C+EG + +A     +M    IN ++V +  LI G     D      
Sbjct: 607 KLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFD 666

Query: 73  LFIEMMDRGLQSD-----------------------------------VVTFNVIMDELC 97
           L  +M D+GL+ D                                   VVT+  +M+ LC
Sbjct: 667 LLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLC 726

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  +MD A  L   M    V P      N + YGC +D L K G +K A  L  ++ + G
Sbjct: 727 KAGEMDRAGLLFKRMQAANVPP------NSITYGCFLDNLTKEGNMKEAIGLHHAMLK-G 779

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L+ N VT+NI I   C   +  +A  +  +M   G+ P+CV ++TL+  + R       +
Sbjct: 780 LLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASV 839

Query: 218 ELLRSMDKRNVMP 230
           +L  +M  R + P
Sbjct: 840 KLWDTMLNRGLEP 852



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 6/196 (3%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           + + +N L+  +  ++   +A  +   M    L  +V T + +++ L K RK      L 
Sbjct: 154 STLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELF 213

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           D  +  GVRPD +          ++  +C++     A+E  + +   G   ++VTYN+ I
Sbjct: 214 DESVNAGVRPDPY------TCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLI 267

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           H LC  +++ +A ++   +  KG+A + V + TL+  F R  +    I+L+  M +    
Sbjct: 268 HGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFS 327

Query: 230 PYASILSIIVDLLVKN 245
           P  + +S +VD L K 
Sbjct: 328 PTEAAVSGLVDGLRKQ 343



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 103/235 (43%), Gaps = 7/235 (2%)

Query: 12  CK-PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           CK  +T+ +N ++        +  A  +   M   N+ P V T ++L++G          
Sbjct: 150 CKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITV 209

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF E ++ G++ D  T + ++  +C+ +    A   +  M   G       +++IV Y
Sbjct: 210 WELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGF------DLSIVTY 263

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GLCK  ++  A E+ +SL   GL  +VVTY   +   C  +Q +    L  +M  
Sbjct: 264 NVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVE 323

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            G +P     + L+    ++ +     EL+  + +   +P   + + +++ L K 
Sbjct: 324 LGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKG 378


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YNT+IDGLCK G ++ A EL  +M+ + +  +VVTYN+L+ G CY+   ++A  
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +MM R +  DVVTF  ++D   K   +DEA  L   MIQ  V P      N V Y  
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDP------NNVTYNS 286

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLC  G+L +A++    +   G  PNVVTYN  I   C    +D+   LF  M  +G
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              +   + TL+  + +  +    +++   M  R V P
Sbjct: 347 FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTP 384



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 6/221 (2%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            PN  TYN++I+G C  G +  AK +F  M  +   P+VVTYN+LI GFC +    +   L
Sbjct: 812  PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 871

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            F EM  +GL  D  T+N ++   C+  K++ A ++ + M+  GV PD      IV Y  L
Sbjct: 872  FCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPD------IVTYNIL 925

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            +D LC  GK++ A  + + L ++ +  +++TYNI I  LC  +++ +A  LF  +  KGV
Sbjct: 926  LDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGV 985

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
             P+ + + T++    RK    +  +L R M +   MP   I
Sbjct: 986  KPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERI 1026



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 124/219 (56%), Gaps = 6/219 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + +  +ID   KEG + +A+ L+ +M   ++ PNV TYNSLI+GFC      +A+Y+
Sbjct: 777 PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYM 836

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   DVVT+N ++   CK++++++  +L   M   G+  DAF       Y  L
Sbjct: 837 FDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAF------TYNTL 890

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ GKL  A+++   +   G+ P++VTYNI +  LCN+ +++KA  +  D++   +
Sbjct: 891 IHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEM 950

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             + + +  ++    R ++  +   L RS+ ++ V P A
Sbjct: 951 DVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDA 989



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 119/211 (56%), Gaps = 10/211 (4%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C P+ VTYNT+I G CK   V+   +LF +M  + +  +  TYN+LIHG+C A   N A+
Sbjct: 845  CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 904

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +F  M+D G+  D+VT+N+++D LC N K+++A  +++ + +  +      +++I+ Y 
Sbjct: 905  KVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEM------DVDIITYN 958

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             +I GLC+  KLK A  L +SLTR G+ P+ + Y   I  LC      +A  L   M+  
Sbjct: 959  IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 1018

Query: 192  GVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            G  P+  I+   +    R + TS   EL+++
Sbjct: 1019 GFMPSERIYDETL----RDHYTSLSAELIKA 1045



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 114/216 (52%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN+II+GLC  G +  AK+ F  M  +   PNVVTYN+LI GFC     +E   L
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL 338

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G  +D+ T+N ++   C+  K+  A  +   M+   V PD      I+ +  L
Sbjct: 339 FQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD------IITHCIL 392

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC  G++++A      +  +     +V YNI IH LC  ++++KA +LF  + V+GV
Sbjct: 393 LHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            P+   +T ++    +     +  EL+R M +  ++
Sbjct: 453 KPDARTYTIMILGLCKNGPRREADELIRRMKEEGII 488



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 6/212 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+ +++ G C    +  A  L + M      PNVV YN+LI G C   + N A  
Sbjct: 138 EPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALE 197

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  +GL +DVVT+N ++  LC + +  +A R+L  M++  + PD      +V +  
Sbjct: 198 LLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPD------VVTFTA 251

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G L  A+EL + + ++ + PN VTYN  I+ LC   ++  A   F  M  KG
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
             PN V + TL+  F +     + ++L + M 
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMS 343



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG V  PN V YNT+I+GLCK   ++ A E+F  M+ + I  + VTYN+LI G   +   
Sbjct: 703 FGFV--PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRW 760

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            +A  L  +M+ R +  +V+ F  ++D   K   + EA  L   MI+  V P      N+
Sbjct: 761 TDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVP------NV 814

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  LI+G C  G L +A+ +   +   G  P+VVTYN  I   C  ++++    LF +
Sbjct: 815 FTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCE 874

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           M  +G+  +   + TL+  + +  + +   ++   M    V P     +I++D L  N
Sbjct: 875 MTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNN 932



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 6/182 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I G CK   VD+  +LF +M  E  N ++ TYN+LIHG+C       A 
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M+ R +  D++T  +++  LC N +++ A    D M +          I IVAY 
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEK------YIGIVAYN 425

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLCK  K++ A EL   L   G+ P+  TY I I  LC +    +A +L   M+ +
Sbjct: 426 IMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEE 485

Query: 192 GV 193
           G+
Sbjct: 486 GI 487



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT  ++++G C+     +A  L   M      PNVV YN++I+G C   D N A  
Sbjct: 671 RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALE 730

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +G+++D VT+N ++  L  + +  +A RLL  M++  + P      N++ +  
Sbjct: 731 VFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDP------NVIFFTA 784

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G L  AR L + + R  ++PNV TYN  I+  C    +  A  +F  M  KG
Sbjct: 785 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 844

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             P+ V + TL+  F +       ++L   M
Sbjct: 845 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEM 875



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 6/213 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + VTYNT+I GL   G    A  L   M    I+PNV+ + +LI  F    +  EA  
Sbjct: 741 RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARN 800

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+ R +  +V T+N +++  C +  + +A  + DLM+  G  PD      +V Y  
Sbjct: 801 LYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPD------VVTYNT 854

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  ++++  +L   +T  GL+ +  TYN  IH  C   +++ A  +F  M   G
Sbjct: 855 LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 914

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           V+P+ V +  L+       +  K + ++  + K
Sbjct: 915 VSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK 947



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +  ++  + K    D    L+ +M++  I+ ++ ++  LIH FC  +  + A  L
Sbjct: 602 PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 661

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM  G +  +VT   +++  C+  +  EA  L+D M   G  P      N+V Y  +
Sbjct: 662 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP------NVVIYNTV 715

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK   L NA E+   + + G+  + VTYN  I  L N  +   A  L  DM  + +
Sbjct: 716 INGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKI 775

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + FT L+ +F+++    +   L + M +R+V+P
Sbjct: 776 DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVP 812



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 10/223 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++  +I   C+   +  A  +  +M      P++VT+ SL+HGFC  N   +A  L I M
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +  G + +VV +N ++D LCKN +++ A  LL+ M + G+  D      +V Y  L+ GL
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGAD------VVTYNTLLTGL 221

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G+  +A  + + + +  + P+VVT+   I        +D+A +L+ +M    V PN 
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNN 281

Query: 198 VIFTTLMPSFI---RKNETSKVIELLRSMD-KRNVMPYASILS 236
           V + +++       R  +  K  +L+ S     NV+ Y +++S
Sbjct: 282 VTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLIS 324



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 6/212 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D A  LF +M      P++V +  ++      N  +   YL+ +M + G+  D+ +F ++
Sbjct: 586 DDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTIL 645

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +   C+  ++  A  LL  M++ G RP      +IV  G L++G C+  + + A  L  S
Sbjct: 646 IHCFCRCSRLSLALALLGKMMKLGFRP------SIVTLGSLLNGFCQGNRFQEAVSLVDS 699

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G +PNVV YN  I+ LC +  ++ A ++F  ME KG+  + V + TL+        
Sbjct: 700 MDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGR 759

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +    LLR M KR + P     + ++D  VK
Sbjct: 760 WTDAARLLRDMVKRKIDPNVIFFTALIDTFVK 791



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 6/213 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           + A  LF +M      P++V +  L+             Y   +M   G+  D+ +F ++
Sbjct: 53  EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTIL 112

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +   C+  ++  A  +L  M++ G  P      +IV +G L+ G C + ++ +A  L   
Sbjct: 113 IHCFCRCSRLSFALSVLGKMMKLGYEP------SIVTFGSLLHGFCLVNRIGDAFSLVIL 166

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           + ++G  PNVV YN  I  LC + +++ A +L  +ME KG+  + V + TL+        
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGR 226

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            S    +LR M KR++ P     + ++D+ VK 
Sbjct: 227 WSDAARMLRDMMKRSINPDVVTFTALIDVFVKQ 259



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%)

Query: 5    NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            NR       P+ VTYN ++D LC  G ++KA  +   ++   ++ +++TYN +I G C  
Sbjct: 908  NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT 967

Query: 65   NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            +   EA  LF  +  +G++ D + +  ++  LC+     EA +L   M + G  P 
Sbjct: 968  DKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPS 1023



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 110/292 (37%), Gaps = 61/292 (20%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI------------------------- 47
           KP+  TY  +I GLCK G   +A EL  +MK+E I                         
Sbjct: 453 KPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEEHSSSNKEISLSL 512

Query: 48  ---------NPNV------VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
                    NP        + ++S + GF          YL +E  +    S   +F+  
Sbjct: 513 REIWERSKSNPFWMQRLIPIAFSSSVKGFV------RRHYLLLERGNNPETSLSRSFSGA 566

Query: 93  MD-----ELCKNR----KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
                  E  +N     K D+A  L   M+Q    P      +IV +  ++  + K+ K 
Sbjct: 567 SHHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPIP------SIVDFTRVLTVIAKMNKF 620

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
                L   +   G+  ++ ++ I IH  C   ++  A  L   M   G  P+ V   +L
Sbjct: 621 DIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSL 680

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
           +  F + N   + + L+ SMD    +P   I + +++ L KN    N++  F
Sbjct: 681 LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVF 732


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNT TYN +I GLCK+  V KA  L  +M +  ++P+++TYNSLIHG C  ND   A 
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAY 459

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M + GL  D  T++V +D LCK  +++EA  L D +   GV+       N V Y 
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKA------NEVIYT 513

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK+GK+  A  L + +     +PN  TYN+ I  LC +++M +A  L   M   
Sbjct: 514 ALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM 573

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           GV P  V +T L+   ++       +++   M      P
Sbjct: 574 GVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQP 612



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N V+Y  +I GLC+ G +++A +LF  M ++N  P V TY  LI+    +    EA 
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL 319

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM ++G + +V T+ V++D LCK  KMDEA ++L  M + G+ P      ++V Y 
Sbjct: 320 NLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIP------SVVTYN 373

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK G + +A E+   +      PN  TYN  I  LC   ++ KA  L   M  +
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLER 433

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++P+ + + +L+    + N+      LL  M++  ++P     S+ +D L K
Sbjct: 434 KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK 486



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 128/238 (53%), Gaps = 8/238 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N + EF    KP    YNTI+  L K   +D+ K ++L++ +  I+PN+ T+N++++G+C
Sbjct: 148 NADGEFKF--KPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYC 205

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
              +  EAE    +++  GL  D  T+  ++   C+N+ +D A  +  +M Q G      
Sbjct: 206 KIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG------ 259

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           C+ N V+Y  LI GLC+ G++  A +L   +T     P V TY + I+AL    +  +A 
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL 319

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +LF +M+ KG  PN   +T L+    ++N+  +  ++L  M ++ ++P     + ++D
Sbjct: 320 NLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALID 377



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 6/199 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V Y  +IDG CK G +D A  L  +M ++   PN  TYN LI G C      EA  
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+  G++  VVT+ +++ E+ K+   D A ++ + M+  G +PD      +  Y  
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPD------VCTYTA 619

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +      G L+   ++   +   G++P++VTY + I          +A D    M   G
Sbjct: 620 FLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTG 679

Query: 193 VAPNCVIFTTLMPSFIRKN 211
             P+  I + L+ +   +N
Sbjct: 680 CKPSLYIVSILIKNLSHEN 698



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 24/252 (9%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            C PN+ TYN +I+GLCKE  + +A  L  +M    + P VVTY  LI         + A
Sbjct: 539 ACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHA 598

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F  M+  G Q DV T+   +        ++E   ++  M + G+ PD      +V Y
Sbjct: 599 LKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD------LVTY 652

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK---------- 180
             LIDG  ++G    A +  + +   G  P++   +I I  L ++ +M +          
Sbjct: 653 TVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSV 712

Query: 181 --------AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
                   A  LF  M   G   +  I+  L+  F ++    +   L+  M +R + P  
Sbjct: 713 SNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSE 772

Query: 233 SILSIIVDLLVK 244
            I + ++D   K
Sbjct: 773 DIYNSLLDCCCK 784



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 24/245 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND------- 66
           P+ VTY  +IDG  + G   +A +    M D    P++   + LI    + N        
Sbjct: 647 PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSE 706

Query: 67  ------GNEAEY-----LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
                  N  EY     LF +M++ G   DV  +  ++   C+  +++EA  L+  M + 
Sbjct: 707 IGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKER 766

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G+ P          Y  L+D  CK+G    A  L  ++   GL+P + +Y + +  L  +
Sbjct: 767 GMSPSE------DIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIE 820

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
              +KA  +F  +   G   + V +  L+   ++++   +  EL+  M+++   P     
Sbjct: 821 GSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTY 880

Query: 236 SIIVD 240
           S++++
Sbjct: 881 SLLIE 885



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 19/209 (9%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M     E G+    NT+ Y               A +LF +M +     +V  Y +LI G
Sbjct: 700 MKETRSEIGIDSVSNTLEYEI-------------ALKLFEKMVEHGCTIDVSIYGALIAG 746

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC      EA+ L   M +RG+      +N ++D  CK     EA RL+D M++ G+ P 
Sbjct: 747 FCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLP- 805

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 + +Y  L+ GL   G  + A+ +   L   G   + V + + I  L   + +D+
Sbjct: 806 -----LLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDE 860

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
             +L   ME KG  PN + ++ L+    R
Sbjct: 861 CSELIDIMEEKGCQPNPLTYSLLIEGLER 889



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 6/171 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           +N I+  L K   +DE   +   ++   + P      NI  +  +++G CKIG +  A  
Sbjct: 162 YNTILMSLSKFLLIDEMKTVYLELLNNQISP------NIYTFNAMVNGYCKIGNVVEAEL 215

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
            +  + +AGL P+  TY   I   C ++ +D A+++FL M  KG   N V +T L+    
Sbjct: 216 YASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLC 275

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
                ++ ++L   M + N  P     ++++  L  +   + ++  FN  K
Sbjct: 276 EAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMK 326


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VTY+++I GLC +G  D   ++  +M   NI P+VVT+++LI  F       EA+ 
Sbjct: 306 KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKE 365

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+ RG+  D +T+N ++D  CK   + EA ++ DLM+  G  PD      IV Y  
Sbjct: 366 LYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD------IVTYSI 419

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+  CK  ++ +   L + ++  GL+PN +TYN  +   C   +++ A +LF +M  +G
Sbjct: 420 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 479

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           V P+ V +  L+       E +K +E+   M K  +     I +II+
Sbjct: 480 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII 526



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y+ +ID LCK+G  D A  LF +M+ + I  +VVTY+SLI G C     ++   
Sbjct: 271 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 330

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+ R +  DVVTF+ ++D   K  K+ EA  L + MI  G+ PD       + Y  
Sbjct: 331 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT------ITYNS 384

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK   L  A ++   +   G  P++VTY+I I++ C  +++D    LF ++  KG
Sbjct: 385 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 444

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + PN + + TL+  F +  + +   EL + M  R V P      I++D L  N
Sbjct: 445 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDN 497



 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 128/246 (52%), Gaps = 29/246 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT++ +ID   KEG + +AKEL+ +M    I P+ +TYNSLI GFC  N  +EA  +
Sbjct: 342 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 401

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
           F  M+ +G + D+VT++++++  CK +++D+  RL   +   G+ P+          FC+
Sbjct: 402 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 461

Query: 125 I--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                ++V YG L+DGLC  G+L  A E+ + + ++ +   +  
Sbjct: 462 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI 521

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YNI IH +CN  ++D A  LF  +  KGV P+ V +  ++    +K   S+   L R M 
Sbjct: 522 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 581

Query: 225 KRNVMP 230
           +    P
Sbjct: 582 EDGCTP 587



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY+ +I+  CK   VD    LF ++  + + PN +TYN+L+ GFC +   N A+
Sbjct: 410 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 469

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ RG+   VVT+ +++D LC N ++++A  + + M +  +       + I  Y 
Sbjct: 470 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM------TLGIGIYN 523

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C   K+ +A  L  SL+  G+ P+VVTYN+ I  LC    + +A  LF  M+  
Sbjct: 524 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 583

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  P+   +  L+ + +  +     +EL+  M        +S + +++D+L
Sbjct: 584 GCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 634



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 8/224 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+G   +P+ VTY  +++ LCK G    A +LF +M++ NI  +VV Y+ +I   C    
Sbjct: 232 EYGF--QPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 289

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++A  LF EM  +G+++DVVT++ ++  LC + K D+  ++L  MI   + PD      
Sbjct: 290 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD------ 343

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V +  LID   K GKL  A+EL   +   G+ P+ +TYN  I   C +  + +A+ +F 
Sbjct: 344 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 403

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            M  KG  P+ V ++ L+ S+ +       + L R +  + ++P
Sbjct: 404 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP 447



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            R + +  +P+T+T++T+++G C EG V +A  L  +M +    P++VT ++LI+G C  
Sbjct: 158 GRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK 217

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA  L   M++ G Q D VT+  +++ LCK+     A  L   M +  ++      
Sbjct: 218 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKA----- 272

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++V Y  +ID LCK G   +A  L   +   G+  +VVTY+  I  LCND + D    +
Sbjct: 273 -SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKM 331

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +M  + + P+ V F+ L+  F+++ +  +  EL   M  R + P     + ++D   K
Sbjct: 332 LREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 391



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +T+I+GLC +G V +A  L  +M +    P+ VTY  +++  C + +   A  
Sbjct: 201 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 260

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M +R +++ VV +++++D LCK+   D+A  L + M   G++ D      +V Y  
Sbjct: 261 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD------VVTYSS 314

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  GK  +  ++ + +    ++P+VVT++  I     + ++ +A +L+ +M  +G
Sbjct: 315 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 374

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +AP+ + + +L+  F ++N   +  ++   M  +   P     SI+++
Sbjct: 375 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 422



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 112/208 (53%), Gaps = 6/208 (2%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P+ +T+++L++GFC     +EA  L   M++   + D+VT + +++ LC   ++ EA  L
Sbjct: 167 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 226

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           +D M++ G +PD       V YG +++ LCK G    A +L + +    +  +VV Y+I 
Sbjct: 227 IDRMVEYGFQPDE------VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIV 280

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I +LC D   D A  LF +ME+KG+  + V +++L+       +     ++LR M  RN+
Sbjct: 281 IDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 340

Query: 229 MPYASILSIIVDLLVKNEISLNSIPQFN 256
           +P     S ++D+ VK    L +   +N
Sbjct: 341 IPDVVTFSALIDVFVKEGKLLEAKELYN 368



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 10/175 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  ++DGLC  G ++KA E+F +M+   +   +  YN +IHG C A+  ++A  L
Sbjct: 482 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSL 541

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  + D+G++ DVVT+NV++  LCK   + EA  L   M + G  PD F       Y  L
Sbjct: 542 FCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDF------TYNIL 595

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           I        L ++ EL + +   G   +  T  + I  L +D ++DK+   FLDM
Sbjct: 596 IRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML-SDRRLDKS---FLDM 646



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 102/237 (43%), Gaps = 30/237 (12%)

Query: 32  VDKAKELFLQMKDENINPNVVTYN------------SLIHGFCYANDGNEAEYLFIEMMD 79
           V+ A +LF  M      P  + +N             L+ GFC   + N           
Sbjct: 80  VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELN----------- 128

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G++ D+ T  ++++  C+ +K+  A  +L    + G  PD       + +  L++G C 
Sbjct: 129 -GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDT------ITFSTLVNGFCL 181

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G++  A  L   +      P++VT +  I+ LC   ++ +A  L   M   G  P+ V 
Sbjct: 182 EGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVT 241

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           +  ++    +   ++  ++L R M++RN+       SI++D L K+    +++  FN
Sbjct: 242 YGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFN 298



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 3/100 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYN +I GLCK+G + +A  LF +MK++   P+  TYN LI      +    +  
Sbjct: 551 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 610

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           L  EM   G  +D  T  +++D L  +R++D++   LD++
Sbjct: 611 LIEEMKVCGFSADSSTIKMVIDML-SDRRLDKS--FLDML 647


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YNT+IDGLCK G ++ A EL  +M+ + +  +VVTYN+L+ G CY+   ++A  
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +MM R +  DVVTF  ++D   K   +DEA  L   MIQ  V P      N V Y  
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDP------NNVTYNS 286

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLC  G+L +A++    +   G  PNVVTYN  I   C    +D+   LF  M  +G
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              +   + TL+  + +  +    +++   M  R V P
Sbjct: 347 FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTP 384



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 114/216 (52%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN+II+GLC  G +  AK+ F  M  +   PNVVTYN+LI GFC     +E   L
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL 338

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G  +D+ T+N ++   C+  K+  A  +   M+   V PD      I+ +  L
Sbjct: 339 FQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD------IITHCIL 392

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC  G++++A      +  +     +V YNI IH LC  ++++KA +LF  + V+GV
Sbjct: 393 LHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            P+   +T ++    +     +  EL+R M +  ++
Sbjct: 453 KPDARTYTIMILGLCKNGPRREADELIRRMKEEGII 488



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 6/212 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+ +++ G C    +  A  L + M      PNVV YN+LI G C   + N A  
Sbjct: 138 EPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALE 197

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  +GL +DVVT+N ++  LC + +  +A R+L  M++  + PD      +V +  
Sbjct: 198 LLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPD------VVTFTA 251

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G L  A+EL + + ++ + PN VTYN  I+ LC   ++  A   F  M  KG
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
             PN V + TL+  F +     + ++L + M 
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMS 343



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 98/182 (53%), Gaps = 6/182 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I G CK   VD+  +LF +M  E  N ++ TYN+LIHG+C       A 
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M+ R +  D++T  +++  LC N +++ A    D M       ++   I IVAY 
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDM------RESEKYIGIVAYN 425

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLCK  K++ A EL   L   G+ P+  TY I I  LC +    +A +L   M+ +
Sbjct: 426 IMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEE 485

Query: 192 GV 193
           G+
Sbjct: 486 GI 487



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 10/223 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++  +I   C+   +  A  +  +M      P++VT+ SL+HGFC  N   +A  L I M
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +  G + +VV +N ++D LCKN +++ A  LL+ M + G+  D      +V Y  L+ GL
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGAD------VVTYNTLLTGL 221

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G+  +A  + + + +  + P+VVT+   I        +D+A +L+ +M    V PN 
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNN 281

Query: 198 VIFTTLMPSFI---RKNETSKVIELLRSMD-KRNVMPYASILS 236
           V + +++       R  +  K  +L+ S     NV+ Y +++S
Sbjct: 282 VTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLIS 324



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 6/213 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           + A  LF +M      P++V +  L+             Y   +M   G+  D+ +F ++
Sbjct: 53  EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTIL 112

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +   C+  ++  A  +L  M++ G  P      +IV +G L+ G C + ++ +A  L   
Sbjct: 113 IHCFCRCSRLSFALSVLGKMMKLGYEP------SIVTFGSLLHGFCLVNRIGDAFSLVIL 166

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           + ++G  PNVV YN  I  LC + +++ A +L  +ME KG+  + V + TL+        
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGR 226

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            S    +LR M KR++ P     + ++D+ VK 
Sbjct: 227 WSDAARMLRDMMKRSINPDVVTFTALIDVFVKQ 259


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VTY+++I GLC +G  D   ++  +M   NI P+VVT+++LI  F       EA+ 
Sbjct: 277 KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKE 336

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+ RG+  D +T+N ++D  CK   + EA ++ DLM+  G  PD      IV Y  
Sbjct: 337 LYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD------IVTYSI 390

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+  CK  ++ +   L + ++  GL+PN +TYN  +   C   +++ A +LF +M  +G
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           V P+ V +  L+       E +K +E+   M K  +     I +II+
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII 497



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y+ +ID LCK+G  D A  LF +M+ + I  +VVTY+SLI G C     ++   
Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 301

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+ R +  DVVTF+ ++D   K  K+ EA  L + MI  G+ PD       + Y  
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT------ITYNS 355

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK   L  A ++   +   G  P++VTY+I I++ C  +++D    LF ++  KG
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + PN + + TL+  F +  + +   EL + M  R V P      I++D L  N
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDN 468



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 128/246 (52%), Gaps = 29/246 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT++ +ID   KEG + +AKEL+ +M    I P+ +TYNSLI GFC  N  +EA  +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
           F  M+ +G + D+VT++++++  CK +++D+  RL   +   G+ P+          FC+
Sbjct: 373 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432

Query: 125 I--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                ++V YG L+DGLC  G+L  A E+ + + ++ +   +  
Sbjct: 433 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI 492

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YNI IH +CN  ++D A  LF  +  KGV P+ V +  ++    +K   S+   L R M 
Sbjct: 493 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 552

Query: 225 KRNVMP 230
           +    P
Sbjct: 553 EDGCTP 558



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY+ +I+  CK   VD    LF ++  + + PN +TYN+L+ GFC +   N A+
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ RG+   VVT+ +++D LC N ++++A  + + M +  +       + I  Y 
Sbjct: 441 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM------TLGIGIYN 494

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C   K+ +A  L  SL+  G+ P+VVTYN+ I  LC    + +A  LF  M+  
Sbjct: 495 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 554

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  P+   +  L+ + +  +     +EL+  M        +S + +++D+L
Sbjct: 555 GCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 605



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 8/224 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+G   +P+ VTY  +++ LCK G    A +LF +M++ NI  +VV Y+ +I   C    
Sbjct: 203 EYGF--QPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 260

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++A  LF EM  +G+++DVVT++ ++  LC + K D+  ++L  MI   + PD      
Sbjct: 261 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD------ 314

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V +  LID   K GKL  A+EL   +   G+ P+ +TYN  I   C +  + +A+ +F 
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 374

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            M  KG  P+ V ++ L+ S+ +       + L R +  + ++P
Sbjct: 375 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP 418



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            R + +  +P+T+T++T+++G C EG V +A  L  +M +    P++VT ++LI+G C  
Sbjct: 129 GRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK 188

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA  L   M++ G Q D VT+  +++ LCK+     A  L   M +  ++      
Sbjct: 189 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKA----- 243

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++V Y  +ID LCK G   +A  L   +   G+  +VVTY+  I  LCND + D    +
Sbjct: 244 -SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKM 302

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             +M  + + P+ V F+ L+  F+++ +  +  EL   M  R + P
Sbjct: 303 LREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +T+I+GLC +G V +A  L  +M +    P+ VTY  +++  C + +   A  
Sbjct: 172 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M +R +++ VV +++++D LCK+   D+A  L + M   G++ D      +V Y  
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD------VVTYSS 285

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  GK  +  ++ + +    ++P+VVT++  I     + ++ +A +L+ +M  +G
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +AP+ + + +L+  F ++N   +  ++   M  +   P     SI+++
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 393



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 112/208 (53%), Gaps = 6/208 (2%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P+ +T+++L++GFC     +EA  L   M++   + D+VT + +++ LC   ++ EA  L
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           +D M++ G +PD       V YG +++ LCK G    A +L + +    +  +VV Y+I 
Sbjct: 198 IDRMVEYGFQPDE------VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIV 251

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I +LC D   D A  LF +ME+KG+  + V +++L+       +     ++LR M  RN+
Sbjct: 252 IDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 311

Query: 229 MPYASILSIIVDLLVKNEISLNSIPQFN 256
           +P     S ++D+ VK    L +   +N
Sbjct: 312 IPDVVTFSALIDVFVKEGKLLEAKELYN 339



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 10/175 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  ++DGLC  G ++KA E+F +M+   +   +  YN +IHG C A+  ++A  L
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSL 512

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  + D+G++ DVVT+NV++  LCK   + EA  L   M + G  PD F       Y  L
Sbjct: 513 FCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDF------TYNIL 566

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           I        L ++ EL + +   G   +  T  + I  L +D ++DK+   FLDM
Sbjct: 567 IRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML-SDRRLDKS---FLDM 617



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 103/240 (42%), Gaps = 30/240 (12%)

Query: 32  VDKAKELFLQMKDENINPNVVTYN------------SLIHGFCYANDGNEAEYLFIEMMD 79
           V+ A +LF  M      P  + +N             L+ GFC   + N           
Sbjct: 51  VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELN----------- 99

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G++ D+ T  ++++  C+ +K+  A  +L    + G  PD       + +  L++G C 
Sbjct: 100 -GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDT------ITFSTLVNGFCL 152

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G++  A  L   +      P++VT +  I+ LC   ++ +A  L   M   G  P+ V 
Sbjct: 153 EGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVT 212

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           +  ++    +   ++  ++L R M++RN+       SI++D L K+    +++  FN  +
Sbjct: 213 YGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 272



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 3/100 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYN +I GLCK+G + +A  LF +MK++   P+  TYN LI      +    +  
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 581

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           L  EM   G  +D  T  +++D L  +R++D++   LD++
Sbjct: 582 LIEEMKVCGFSADSSTIKMVIDML-SDRRLDKS--FLDML 618


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 136/268 (50%), Gaps = 31/268 (11%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+G   K +  TYN  I G CK G V  A  +F +M  E + PN+VTYNSLI   C A +
Sbjct: 318 EWGF--KRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGE 375

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI- 125
            + A  +   M   GL  D+VT  +++D LCK++++D+A  L + +++ G+ PD +    
Sbjct: 376 VSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTI 435

Query: 126 ----------------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
                                       +IV Y CLIDGLC+ G++ NA  L   +   G
Sbjct: 436 LIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKG 495

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
            +P+ +TY+I + AL   + +D+A  LF  M  +G+ P+ + +T ++  + +     + I
Sbjct: 496 PLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAI 555

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKN 245
            L R M  +N++P     +I+ + + K+
Sbjct: 556 NLFREMHMKNLVPDIVTYTILFNAVFKS 583



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT   ++ G C +G VD A+ELF  + +     +V TYN  IHG+C      +A  
Sbjct: 287 EPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVR 346

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM   G+  ++VT+N ++D LCK  ++  A  ++  M + G+ PD      IV    
Sbjct: 347 VFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPD------IVTCCI 400

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGLCK  +L  A  L   L  +GL P+V +Y I IH  C   +M +A +L  DM +K 
Sbjct: 401 LLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKN 460

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P+ V ++ L+    R    S    LL  M  +  +P     SI++D L K +    ++
Sbjct: 461 LVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAV 520

Query: 253 PQFNR 257
             FN+
Sbjct: 521 FLFNQ 525



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 125/249 (50%), Gaps = 6/249 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   K N V Y+ +ID LC+ GFVD+  E + +M    + PN  TY SLI G C      
Sbjct: 178 GFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFL 237

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           E   L  EM+ RGL   V  F V++D LCKN  + EA  + D M+  G  P      NIV
Sbjct: 238 EGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEP------NIV 291

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
               L+ G C  G +  AREL  ++   G   +V TYN+ IH  C   ++  A  +F +M
Sbjct: 292 TCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEM 351

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             +GV PN V + +L+    +  E S   E++++M +  + P      I++D L K++  
Sbjct: 352 CREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRL 411

Query: 249 LNSIPQFNR 257
             +I  FN+
Sbjct: 412 DQAILLFNQ 420



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 20/230 (8%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TV  NT++ GLC  G V KA E   ++ +   + N V+Y  LI+G C     NEA  L 
Sbjct: 106 DTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNL- 164

Query: 75  IEMMDRG---------LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + M+++          ++ +VV +++++D LC+N  +DE     + M+  GV P+ F   
Sbjct: 165 LRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEF--- 221

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               YG LI GLC +GK      L   + R GL  +V  + + I  LC +  + +A ++F
Sbjct: 222 ---TYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMF 278

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPY 231
            +M  +G  PN V  T LM  +  K       EL  ++     KR+V  Y
Sbjct: 279 DEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTY 328


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYN ++D  C++G V +AK L  +M  + I P VV Y +LIHG C  +   EAE +
Sbjct: 184 PTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESM 243

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M D G+  ++ T+NV+MD  CK   + +A  L   M+  G++P      N+V +G L
Sbjct: 244 FRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQP------NVVTFGIL 297

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK+ +L  AR     + + G++PNVV +N  I          +A DL L+ME   +
Sbjct: 298 IDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKI 357

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +P+   ++ L+ +  R     +  ++L+ M+K  V   + + + ++D
Sbjct: 358 SPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLID 404



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 119/210 (56%), Gaps = 6/210 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  V Y T+I GLC E  + +A+ +F QMKD  + PN+ TYN L+ G+C   +  +A +
Sbjct: 218 EPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALH 277

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+  M+D GLQ +VVTF +++D LCK R++  A R    M + GV P      N+V +  
Sbjct: 278 LYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVP------NVVVFNS 331

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  K G    A +L   + +  + P+V TY+I I   C    +++A D+   ME +G
Sbjct: 332 LIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEG 391

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V  N V++ +L+  + ++    K +E+ ++
Sbjct: 392 VPANSVVYNSLIDGYCKEGNMEKALEIFKA 421



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 117/241 (48%), Gaps = 10/241 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P     N +++GL K+   D   EL+  M    + P VVTYN L+   C   D   A+ L
Sbjct: 149 PAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSL 208

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +G++  VV +  ++  LC   K+ EA  +   M   GV P      N+  Y  L
Sbjct: 209 ISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFP------NLYTYNVL 262

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK   +K A  L Q +   GL PNVVT+ I I ALC   ++  A   F+ M   GV
Sbjct: 263 MDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGV 322

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN V+F +L+  + +    S+  +LL  M+K  + P     SI    L+KN   L ++ 
Sbjct: 323 VPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSI----LIKNACRLGTVE 378

Query: 254 Q 254
           +
Sbjct: 379 E 379



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 12/190 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT+  +ID LCK   +  A+  F+QM    + PNVV +NSLI G+  A + +EA  
Sbjct: 288 QPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATD 347

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L +EM    +  DV T+++++   C+   ++EA  +L  M + GV        N V Y  
Sbjct: 348 LLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGV------PANSVVYNS 401

Query: 133 LIDGLCKIGKLKNARELSQS------LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           LIDG CK G ++ A E+ ++      + R GL P+ + Y + +    N + M     L  
Sbjct: 402 LIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHA 461

Query: 187 DMEVKGVAPN 196
           DM   G+ PN
Sbjct: 462 DMIKMGIVPN 471



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 14/167 (8%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FGVV  PN V +N++IDG  K G   +A +L L+M+   I+P+V TY+ LI   C    
Sbjct: 319 KFGVV--PNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGT 376

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA------TRLLDLMIQGGVRPD 120
             EA+ +   M   G+ ++ V +N ++D  CK   M++A      T+    M + G+RPD
Sbjct: 377 VEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPD 436

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           A      +AY  ++ G      + +   L   + + G++PN VT  +
Sbjct: 437 A------LAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQV 477



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 11/204 (5%)

Query: 41  QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           Q++    NP+V  +  LI  F      +EA  +++++   G    V   N +++ L K  
Sbjct: 111 QLRGSKFNPSV--FGVLIIAFSEVGLVDEALRVYLKV---GAFPAVQACNALLNGLLKKS 165

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
             D    L + M+   + P       +V Y  L+D  C+ G +  A+ L   + + G+ P
Sbjct: 166 SFDIMWELYNNMVSRRLFP------TVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEP 219

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            VV Y   IH LC++ ++ +A  +F  M+  GV PN   +  LM  + +     + + L 
Sbjct: 220 TVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLY 279

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
           + M    + P      I++D L K
Sbjct: 280 QGMLDDGLQPNVVTFGILIDALCK 303


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 130/259 (50%), Gaps = 44/259 (16%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC------ 62
           G   KP+ V YNTII+ LCK   +  A +++ +M  + I+P+VVTY +LIHGFC      
Sbjct: 191 GHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMK 250

Query: 63  ---------------------------YANDG-----NEAEYLFIEMMDRGLQSDVVTFN 90
                                         +G     +EA  LF EM  + +  D+VT+N
Sbjct: 251 EAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYN 310

Query: 91  VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150
            ++D LCKN  ++ A  LL  M + G++PD +      +Y  L+DGLCK G+L+ A+E  
Sbjct: 311 SLIDGLCKNHHLERAIALLKEMKEHGIQPDVY------SYTILLDGLCKGGRLEIAKEFF 364

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           Q L   G   NV  YN+ I+ LC      +A DL   ME KG  PN + F T++ +   K
Sbjct: 365 QHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEK 424

Query: 211 NETSKVIELLRSMDKRNVM 229
           +E  K  ++LR M  R ++
Sbjct: 425 DENDKAEKILREMIARGLL 443



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T  +N I+  L K         LF Q +   I P++ T + LI+ FC+      A  +
Sbjct: 56  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 115

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  ++ RG   D +T N ++  LC   ++ +     D ++  G + D       V+YG L
Sbjct: 116 FANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQ------VSYGTL 169

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK G+ K    L + L    + P+VV YN  I++LC ++ +  A D++ +M VKG+
Sbjct: 170 INGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGI 229

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+ V +TTL+  F    +  +   LL  M  +N+ P     S+++D L K
Sbjct: 230 SPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGK 280



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 2/112 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  +P+  +Y  ++DGLCK G ++ AKE F  +  +  + NV  YN +I+G C A 
Sbjct: 333 KEHGI--QPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAG 390

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
              EA  L  +M  +G   + +TF  I+  L +  + D+A ++L  MI  G+
Sbjct: 391 LFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARGL 442



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 6/159 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           FN I+  L KN++      L       G+ PD  C ++I     LI+  C    +  A  
Sbjct: 61  FNNILSSLVKNKRYPTVISLFKQFEPNGITPD-LCTLSI-----LINCFCHQAHITLAFS 114

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           +  ++ + G  P+ +T N  I  LC   ++ K       +  +G   + V + TL+    
Sbjct: 115 VFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLC 174

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +  ET  V  LLR ++  +V P   + + I++ L KN++
Sbjct: 175 KAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKL 213


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +  +I GLC+ G V  A E F QM      PNV  YN L+HG C +    +A  L
Sbjct: 148 PDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTL 207

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM       DVVT+N ++D +CK R+++E  +L + M   G  P      N++ +  L
Sbjct: 208 FAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVP------NVITFSTL 261

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+L+ A E+  S+  AG  PN  TY   I  LC  E++ +A +LF  M    +
Sbjct: 262 IHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACI 321

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
            P+ V + +L+  + ++    +  +L R M 
Sbjct: 322 PPDAVAYNSLIAGYCKRGSMDEAEKLYREMS 352



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN   YN ++ GLC  G +++A  LF +MK  + +P+VVTYN+L+   C A    E  
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGC 240

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M   G   +V+TF+ ++  LC+  ++++A  +   M++ G +P+ +       Y 
Sbjct: 241 KLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKY------TYT 294

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME-V 190
            LI GLC+  K+  AREL + +T+A + P+ V YN  I   C    MD+A  L+ +M   
Sbjct: 295 TLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGG 354

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G+ P  V F TL+  F +  +  +  EL+  M  + +   +    I++  L +
Sbjct: 355 AGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSR 408



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 124/234 (52%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   +N ++ G  +   ++KA+E++  M +    P+ V+Y+ LIHG       +E+ 
Sbjct: 41  CNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESL 100

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM+ RG    +  ++ ++  L K R++D A+ L D MI+GG  PD      ++ Y 
Sbjct: 101 KILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPD-----RLMFYE 155

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLC+ GK+K+A E  + + + G  PNV  YN+ +H LC+  Q+++A+ LF +M+  
Sbjct: 156 -LILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSH 214

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             +P+ V + TL+ +  +     +  +L  +M     +P     S ++  L + 
Sbjct: 215 SCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRT 268



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +T++T+I GLC+ G ++KA E+F  M +    PN  TY +LI G C A    +A  L
Sbjct: 253 PNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQAREL 312

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGC 132
           F +M    +  D V +N ++   CK   MDEA +L   M  G G++P       IV +  
Sbjct: 313 FEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQP------TIVTFNT 366

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK+GKL  A EL   +   GL  +  TY I I  L    ++D+A +++  M  K 
Sbjct: 367 LIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKK 426

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + V   + +    +     +   +  +  K   +P      I+ + L+K
Sbjct: 427 FLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIK 478



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 106/218 (48%), Gaps = 7/218 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  TY T+I GLC+   V +A+ELF +M    I P+ V YNSLI G+C     +EAE
Sbjct: 286 CKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAE 345

Query: 72  YLFIEMMD-RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            L+ EM    GLQ  +VTFN ++D  CK  K+  A  L+  M   G+  D+        Y
Sbjct: 346 KLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADS------CTY 399

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GL +  KL  A E+ + +     + + V+    +  LC    +D+A+ +F     
Sbjct: 400 RILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRK 459

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            G  PN   F  L  S I+        +L+     R++
Sbjct: 460 SGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARDI 497



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 6/201 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M+D+NI  NV TY+S+I          E+  +  EMM  G   DV  FN +M    ++  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           M++A  +   M++ G +PD       V+Y  LI GL KIGKL  + ++   +   G  P+
Sbjct: 61  MEKAREVYQHMVESGYKPDN------VSYHILIHGLAKIGKLDESLKILSEMVMRGQTPS 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           +  Y+  + AL    ++D A  LF +M   G  P+ ++F  L+    +  +     E  +
Sbjct: 115 MQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFK 174

Query: 222 SMDKRNVMPYASILSIIVDLL 242
            M K    P   + ++++  L
Sbjct: 175 QMPKHGCQPNVPVYNVLLHGL 195



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +P  VT+NT+IDG CK G + +A EL  +M  + +  +  TY  LI G   A   +
Sbjct: 354 GAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLD 413

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  ++ +M ++    D V+    +  LCK   +D+A  + +   + G  P      N  
Sbjct: 414 EALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVP------NPE 467

Query: 129 AYGCLIDGLCKIGKLKNAREL 149
            +  L + L K+G++++A++L
Sbjct: 468 TFRILSESLIKLGRVEDAQKL 488


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 117/217 (53%), Gaps = 6/217 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  T+N +ID  CK G +D A ELF  M D    P++ TYN +I G C AN  ++A 
Sbjct: 238 CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDAR 297

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M + G   DVVT+N I+  LCK  ++DEA  + +++  GG   D      +V   
Sbjct: 298 QLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLD------VVTCS 351

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK  +L +A +L + + R G  P+VV Y I IH  C  +Q+DK+   F +M  K
Sbjct: 352 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 411

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           G  P  + ++ ++    +         LL++M +R V
Sbjct: 412 GCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 64/298 (21%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I+G CK G +D+A  LF QM + + +P+V TYN LI G+C      +  
Sbjct: 133 CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGA 192

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAF 122
            L  EM+  G + + +T+N +MD L K+ K  +A  L  +M++   +P         D F
Sbjct: 193 KLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMF 252

Query: 123 CEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C++                    +I  Y  +I G C+  ++ +AR+L + +T AG  P+V
Sbjct: 253 CKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDV 312

Query: 163 VTYNITIHALCNDEQMDKAHDL---------FLD-------------------------- 187
           VTYN  +  LC   Q+D+A+++         FLD                          
Sbjct: 313 VTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLRE 372

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           ME  G AP+ V +T L+  F + ++  K +     M  +  +P     SI++D L K+
Sbjct: 373 MERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKS 430



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 10/235 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+    C P+ +TY  ++D LCK   +  A  +   M +    PNVVTYN+LI+GFC   
Sbjct: 92  RDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLG 151

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + +EA  LF +M++     DV T+N+++D  CK  +  +  +LL  M++ G      CE 
Sbjct: 152 NMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYG------CEP 205

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N + Y  L+D L K GK  +A  L+Q + R    P+  T+N+ I   C   Q+D A++LF
Sbjct: 206 NFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELF 265

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
             M  +G  P+   +  ++    R N      +LL  M +    P    Y SI+S
Sbjct: 266 QLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVS 320



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 119/234 (50%), Gaps = 7/234 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C P+++TY+T+I+G CK     +A  L  +M+   I P+   YN++I G C  N   ++
Sbjct: 28  LCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLC-DNGRVDS 86

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +    M R     V+T+ +++D LCK+ ++ +A+ +L+ MI+ G  P      N+V Y
Sbjct: 87  ALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAP------NVVTY 140

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI+G CK+G +  A  L   +      P+V TYNI I   C  E+      L  +M  
Sbjct: 141 NTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVK 200

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G  PN + + TLM S ++  +      L + M +R+  P     ++++D+  K
Sbjct: 201 YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK 254



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 7/226 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++    ++    +A +LF        +P+ +TY++LI+GFC A D  +A  L  EM  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           RG+      +N I+  LC N ++D A      M +        C  +++ Y  L+D LCK
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR-------HCAPSVITYTILVDALCK 114

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
             ++ +A  + + +  AG  PNVVTYN  I+  C    MD+A  LF  M     +P+   
Sbjct: 115 SARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 174

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  L+  + ++       +LL+ M K    P     + ++D LVK+
Sbjct: 175 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKS 220



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 7/192 (3%)

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           N L+  F       EA  LF   +      D +T++ +++  CK R   +A RLLD M +
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            G+ P      +   Y  +I GLC  G++ +A    + + R    P+V+TY I + ALC 
Sbjct: 62  RGIVP------HNAVYNTIIKGLCDNGRVDSALVHYRDMQRH-CAPSVITYTILVDALCK 114

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
             ++  A  +  DM   G APN V + TL+  F +     + + L   M + +  P    
Sbjct: 115 SARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 174

Query: 235 LSIIVDLLVKNE 246
            +I++D   K E
Sbjct: 175 YNILIDGYCKQE 186


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 134/271 (49%), Gaps = 32/271 (11%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           + G  CKPN  TYNT+I+GLCK G +D A  LF ++  + ++P+  TY++L+HG C A  
Sbjct: 139 KMGKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAER 198

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------- 119
              A  ++  M++     D   +N + D  CK R++DEA  +L  MIQ G +P       
Sbjct: 199 LEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNC 258

Query: 120 -------------DAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                        +A+          C  N V YG +I GL KI +++   EL + +++A
Sbjct: 259 IINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKA 318

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF--IRKNETS 214
           GL P+   Y+  I+A     ++D+A  +  D     V P+  ++TTL+  +   RK    
Sbjct: 319 GLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVD 378

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + + L ++M  R V P     +I++  L K 
Sbjct: 379 EALLLFQNMKDRRVWPNVITYNIVLRGLCKT 409



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 9/215 (4%)

Query: 12  CKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           CKP+ VTYN II+G+C+ +  +++A  LF QM   +  PN VTY ++I G     +    
Sbjct: 249 CKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRC 308

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF  M   GL  D   ++ ++    K RK+DEA  +L    +  V PD +       Y
Sbjct: 309 LELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVY------MY 362

Query: 131 GCLIDGLCKIGKLK--NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
             LI G C+  K +   A  L Q++    + PNV+TYNI +  LC   + D+A+ +F +M
Sbjct: 363 TTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEM 422

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
                +PN + F  +    I   +T K   +   M
Sbjct: 423 FKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFMDM 457



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 114/270 (42%), Gaps = 31/270 (11%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            RE    C+P+  ++  II   C      +A      M+   I P+V  YN ++ G+C  
Sbjct: 68  KRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDL 127

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A   F + M +  + +V T+N +++ LCK  K+D A  L   +    V PD F  
Sbjct: 128 GRVGRALIKFGK-MGKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTY 186

Query: 125 INIV-----------------------------AYGCLIDGLCKIGKLKNARELSQSLTR 155
             +V                             AY  + DG CK  ++  A E+ +++ +
Sbjct: 187 STLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQ 246

Query: 156 AGLMPNVVTYNITIHALCN-DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
            G  P+VVTYN  I+ +C    ++++A+ LF  M      PN V + T++    +  E  
Sbjct: 247 RGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQ 306

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + +EL + M K  + P       ++   VK
Sbjct: 307 RCLELFKGMSKAGLSPDGYAYHSLIYAFVK 336



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 8/186 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN VTY T+I GL K   V +  ELF  M    ++P+   Y+SLI+ F      +
Sbjct: 282 GSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLD 341

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK--MDEATRLLDLMIQGGVRPDAFCEIN 126
           EA+ +  +     +  DV  +  ++   C+ RK  +DEA  L   M    V P      N
Sbjct: 342 EAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWP------N 395

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           ++ Y  ++ GLCK G+   A ++ Q + +    PN +T+ +    + +  + DK   +F+
Sbjct: 396 VITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFM 455

Query: 187 DMEVKG 192
           DM  KG
Sbjct: 456 DMVYKG 461



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 102/231 (44%), Gaps = 13/231 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   Y  ++  L +     +A   F +    +  P++ ++  +I  FC   +   A  
Sbjct: 41  RHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWR 100

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               M   G+  DV  +NV++   C   ++  A      +I+ G +    C+ N+  Y  
Sbjct: 101 YLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRA------LIKFG-KMGKTCKPNVATYNT 153

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD---KAHDLFLDME 189
           +I+GLCK GK+  A  L   L    + P+  TY+  +H LC  E+++   K +D+ L+  
Sbjct: 154 VINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEAN 213

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             G A     +  +   F ++    + +E+L++M +R   P     + I++
Sbjct: 214 YDGDAG---AYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIIN 261


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 121/199 (60%), Gaps = 7/199 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C P  VTYNT+IDGLCK G ++ A  L+  M ++ ++ P++ TY++LI+G   +N G +A
Sbjct: 271 CHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKA 330

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L+ EM+D G   DVVT+N ++D LCK+   D+A  +   M  G V     C+ N++ Y
Sbjct: 331 YELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNV-----CDPNVITY 385

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LID  CK+ +L +A +L++ +    L+P+ VT+   I  LC + ++D+AH+LF  +  
Sbjct: 386 TVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIG- 444

Query: 191 KGVAPNCVIFTTLMPSFIR 209
           K   P+ V+F T++  + +
Sbjct: 445 KTCKPDSVLFNTMLAGYCK 463



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/241 (34%), Positives = 128/241 (53%), Gaps = 8/241 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           ++   +  PN ++Y  +IDGLCK   VDKA  LF QM D+ I P+VVTY +LI G     
Sbjct: 195 KDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQR 254

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCE 124
              EA  LF E   +G    VVT+N ++D LCK  +++ A  L D M+ +  ++PD F  
Sbjct: 255 RVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMF-- 312

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                Y  LI+GL    + + A EL + +   G  P+VVTYN  +  LC     DKA ++
Sbjct: 313 ----TYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEI 368

Query: 185 FLDMEVKGVA-PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           F  M V  V  PN + +T L+  F + +     ++L + M+ R+++P A   + ++  L 
Sbjct: 369 FRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLC 428

Query: 244 K 244
           K
Sbjct: 429 K 429



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 41/269 (15%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI----------------------- 47
           V +P+ V+YNT+++G  K G V KA  LF +MKD  I                       
Sbjct: 132 VFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLRSHNIVLRGLCSGGKISMAW 191

Query: 48  ----------NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                     +PN+++Y  +I G C +   ++A  LF +M+D+ +  DVVT+  ++D L 
Sbjct: 192 EVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLG 251

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR-A 156
           K R++ EA  L +     G  P       +V Y  +IDGLCK G+++NA  L   + R  
Sbjct: 252 KQRRVKEAYDLFEEARAKGCHP------TVVTYNTMIDGLCKCGRIENALTLYDDMVREP 305

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
            L P++ TY+  I+ L    + +KA++L+ +M   G +P+ V + TL+    +     K 
Sbjct: 306 HLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKA 365

Query: 217 IELLRSMDKRNVM-PYASILSIIVDLLVK 244
           +E+ R M   NV  P     ++++D   K
Sbjct: 366 MEIFRKMGVGNVCDPNVITYTVLIDRFCK 394



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 99/185 (53%), Gaps = 8/185 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDGNEA 70
           C P+ VTYNT++DGLCK G  DKA E+F +M   N+ +PNV+TY  LI  FC  +   +A
Sbjct: 342 CSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDA 401

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  EM  R L  D VTF  ++ +LCK  ++DEA  L +  I    +PD+      V +
Sbjct: 402 VKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFE-SIGKTCKPDS------VLF 454

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++ G CKI ++ +A++L   +  +G  P + TY   +   C   +   A  ++ +M  
Sbjct: 455 NTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIE 514

Query: 191 KGVAP 195
            G  P
Sbjct: 515 MGFPP 519



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 9/157 (5%)

Query: 6   REFGV--VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           R+ GV  VC PN +TY  +ID  CK   +  A +L  +M+  ++ P+ VT+ ++I   C 
Sbjct: 370 RKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCK 429

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
            +  +EA  LF E + +  + D V FN ++   CK  ++D+A +L D M+  G      C
Sbjct: 430 ESRIDEAHELF-ESIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSG------C 482

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
              +  Y  L+ G C+ G+  +A  +   +   G  P
Sbjct: 483 APTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPP 519



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 1/107 (0%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+ T+I  LCKE  +D+A ELF  +  +   P+ V +N+++ G+C     ++A+ L
Sbjct: 415 PDAVTFTTVIQKLCKESRIDEAHELFESI-GKTCKPDSVLFNTMLAGYCKITRIDDAKKL 473

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
              M+D G    + T+  ++   C+  +  +A  +   MI+ G  P+
Sbjct: 474 HDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 10/247 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NEAE 71
           +PN V YN I+DGLCK G V +A  LF +M   N+ PNVVTYN LI G C    G  E  
Sbjct: 185 EPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGV 244

Query: 72  YLFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            LF EM+ ++G+  DV TF+++++  CK   +  A  ++  MI+ GV      E+N+V Y
Sbjct: 245 GLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGV------ELNVVTY 298

Query: 131 GCLIDGLCKIGKLKNARELSQSLTR--AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
             LI G C   +++ A  +   + R   G +P+VVTYN  IH  C  ++++KA  L  +M
Sbjct: 299 NSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEM 358

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             KG+ P+   +T+L+  F    +     EL  +M  +  +P     ++++D L K  + 
Sbjct: 359 VGKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLD 418

Query: 249 LNSIPQF 255
             ++  F
Sbjct: 419 SEAMTLF 425



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 123/238 (51%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ VTYN++I G CK   V+KA  L  +M  + ++P+V T+ SLI GF       
Sbjct: 325 GEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPL 384

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A+ LFI M D+G    + T  V++D L K     EA  L   M + G+      +++IV
Sbjct: 385 AAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGL------DLDIV 438

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  ++DG+CK+GKL +AR+L   +   GL  +  T+NI I  LC +  +D A +L   M
Sbjct: 439 IYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKM 498

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +  G  PN   +   +   +RK + S+  + L+ M  +     A+   +++  L  NE
Sbjct: 499 KENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPVDATTAELLIRFLSANE 556



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ-SDVVTFN 90
           V  + + F +M   N  P +  +N L      +     A  L   +   G + +DV T N
Sbjct: 57  VSVSVDFFHRMLTLNPFPCIQDFNLLFGIVAKSQHFATAISLIKTLHSLGYEIADVCTLN 116

Query: 91  VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG-CLIDGLCKIGKLKNAREL 149
           ++++ LC+ RK      +L LM + G+ P     +N +A G C+++GLCKIG    A E 
Sbjct: 117 ILINCLCRLRKTTLGFAVLGLMTKIGLEP-TLVTLNTIANGLCIVNGLCKIGDTSGALES 175

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            + + +  L PNVV YN  +  LC    + +A  LF +M V  V PN V +  L+     
Sbjct: 176 LKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCG 235

Query: 210 K-NETSKVIELLRSM-DKRNVMPYASILSIIVDLLVKNEISLNS 251
           +     + + L   M  ++ ++P     SI+V+   K  + L +
Sbjct: 236 EVGGWREGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRA 279



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K ++ T+N +I GLC+EG +D A+EL  +MK+    PN  +YN  + G     D + +  
Sbjct: 469 KIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDISRSRK 528

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
               M D+G   D  T  +++  L  N +
Sbjct: 529 YLQIMKDKGFPVDATTAELLIRFLSANEE 557


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P TV++NT+I+GLCK   +D+   L   M++  I P+V TY+ LIHG C     + AE 
Sbjct: 255 RPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQ 314

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  RGL+ + +TF  ++D   ++R+MD A      M+  GV+PD      +V Y  
Sbjct: 315 LFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPD------LVMYNT 368

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLCK+G +  AR+L   +   G+ P+ +TY   I   C +  ++ A ++   M  +G
Sbjct: 369 LLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEG 428

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V  + V FT L+  F R          LR M +  + P  +  ++++D
Sbjct: 429 VVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVID 476



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YNT+++GLCK G V+KA++L  +MK   + P+ +TY +LI G+C   D   A  
Sbjct: 360 KPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAME 419

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G+  D V F  ++   C++ ++ +A R L  M++ G++PD         Y  
Sbjct: 420 IRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDD------ATYTM 473

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK G +K   +L + +   G  P V+TYN+ ++ LC   QM  A+ L   M   G
Sbjct: 474 VIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLG 533

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V P+ + +  L+    +  +   +++L    +K  ++ YA   S++ +
Sbjct: 534 VTPDDITYNILLEGHCKNGKAEDLLKLRN--EKGLIVDYAYYTSLVSE 579



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 127/261 (48%), Gaps = 29/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I GLCKEG +D A++LF +M+   + PN +T+ +LI G   +   + A   
Sbjct: 291 PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNT 350

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
           + +M+  G++ D+V +N +++ LCK   +++A +L+D M   G++PD          +C+
Sbjct: 351 YHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCK 410

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                               ++ VA+  LI G C+ G++++A    + +  AG+ P+  T
Sbjct: 411 EGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDAT 470

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y + I   C    +     L  +M++ G  P  + +  LM    ++ +      LL +M 
Sbjct: 471 YTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAML 530

Query: 225 KRNVMPYASILSIIVDLLVKN 245
              V P     +I+++   KN
Sbjct: 531 NLGVTPDDITYNILLEGHCKN 551



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 106/195 (54%), Gaps = 9/195 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+IDG CKEG ++ A E+   M +E +  + V + +LI GFC      +AE 
Sbjct: 395 KPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAER 454

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM++ G++ D  T+ +++D  CK   +    +LL  M   G +P       ++ Y  
Sbjct: 455 TLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKP------GVITYNV 508

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLCK G++KNA  L +++   G+ P+ +TYNI +   C +    KA DL      KG
Sbjct: 509 LMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKN---GKAEDLLKLRNEKG 565

Query: 193 VAPNCVIFTTLMPSF 207
           +  +   +T+L+  +
Sbjct: 566 LIVDYAYYTSLVSEY 580



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 6/212 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           ++ ++      GFV  A + F  +++ N          L+     +N        + E++
Sbjct: 156 FDALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEIL 215

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           + G    V  +N+++++ CK   + +A  + + + + G+RP        V++  LI+GLC
Sbjct: 216 EYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRP------TTVSFNTLINGLC 269

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K   L     L +++    + P+V TY++ IH LC + ++D A  LF +M+ +G+ PN +
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            FT L+    R       +     M    V P
Sbjct: 330 TFTALIDGQYRSRRMDSAMNTYHQMLTMGVKP 361


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 130/231 (56%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYNT+I G CK   V+   ELF +M    +  + VTY +LI G  +  D + A+
Sbjct: 320 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 379

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  D++T+++++D LC N K+++A  + D M +  ++      ++I  Y 
Sbjct: 380 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK------LDIYIYT 433

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+ +  +L  SL+  G+ PNVVTYN  I  LC+   + +A+ L   M+  
Sbjct: 434 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 493

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  P+   + TL+ + +R  + +   EL+R M     +  AS + ++ ++L
Sbjct: 494 GPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 544



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN++I+G C    +DKAK++F  M  ++  P++ TYN+LI GFC +    +   L
Sbjct: 287 PDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 346

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  D VT+  ++  L  +   D A ++   M+  GV PD      I+ Y  L
Sbjct: 347 FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD------IMTYSIL 400

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLC  GKL+ A E+   + ++ +  ++  Y   I  +C   ++D   DLF  + +KGV
Sbjct: 401 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 460

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V + T++     K    +   LL+ M +   +P
Sbjct: 461 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP 497



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V +NTIID LCK   VD A  LF +M+ + I PNVVTY+SLI   C     ++A  
Sbjct: 181 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 240

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+++ +  ++VTFN ++D   K  K  EA +L D MI+  + PD F       Y  
Sbjct: 241 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIF------TYNS 294

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+++ + +      P++ TYN  I   C  ++++   +LF +M  +G
Sbjct: 295 LINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG 354

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +TTL+       +     ++ + M    V P     SI++D L  N
Sbjct: 355 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 407



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTY  +++GLCK G +D A  L  +M+   I  +VV +N++I   C     ++A 
Sbjct: 145 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 204

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G++ +VVT++ ++  LC   +  +A++LL  MI+  + P      N+V + 
Sbjct: 205 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP------NLVTFN 258

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GK   A +L   + +  + P++ TYN  I+  C  +++DKA  +F  M  K
Sbjct: 259 ALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK 318

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              P+   + TL+  F +        EL R M  R ++
Sbjct: 319 DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 356



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY+++I  LC  G    A +L   M ++ INPN+VT+N+LI  F       EAE 
Sbjct: 216 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 275

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  D+ T+N +++  C + ++D+A ++ + M+     PD      +  Y  
Sbjct: 276 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD------LDTYNT 329

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  ++++  EL + ++  GL+ + VTY   I  L +D   D A  +F  M   G
Sbjct: 330 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 389

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           V P+ + ++ L+       +  K +E+   M K  +
Sbjct: 390 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 425



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    +  A  L  QM +    P+ +T+ +LIHG    N  +EA  
Sbjct: 76  EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 135

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ RG Q ++VT+ V+++ LCK   +D A  LL+ M    +      E ++V +  
Sbjct: 136 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI------EADVVIFNT 189

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK   + +A  L + +   G+ PNVVTY+  I  LC+  +   A  L  DM  K 
Sbjct: 190 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 249

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V F  L+ +F+++ +  +  +L   M KR++ P
Sbjct: 250 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP 287



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 8/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFL--QMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           P+   +N ++  + K    D    L L  +M      P++VT +SL++G+C+    ++A 
Sbjct: 40  PSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 99

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M++ G + D +TF  ++  L  + K  EA  L+D M+Q G +P      N+V YG
Sbjct: 100 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP------NLVTYG 153

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +++GLCK G +  A  L   +  A +  +VV +N  I +LC    +D A +LF +ME K
Sbjct: 154 VVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 213

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ PN V +++L+         S   +LL  M ++ + P     + ++D  VK
Sbjct: 214 GIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 266



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+T+ T+I GL       +A  L  +M      PN+VTY  +++G C   D + A  
Sbjct: 111 RPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 170

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M    +++DVV FN I+D LCK R +D+A  L   M   G+RP      N+V Y  
Sbjct: 171 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP------NVVTYSS 224

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC  G+  +A +L   +    + PN+VT+N  I A   + +  +A  L  DM  + 
Sbjct: 225 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 284

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + +L+  F   +   K  ++   M  ++  P
Sbjct: 285 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP 322



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYNT+I GLC +  + +A  L  +MK++   P+  TYN+LI       D   +  
Sbjct: 461 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 520

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM       D  T  ++ + L   R
Sbjct: 521 LIREMRSCRFVGDASTIGLVANMLHDGR 548


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+ID LCK G V+ A   F QM  E ++P+++T+ SLIHG C   +  + E L
Sbjct: 328 PNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKL 387

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++RG+  + +  N IMD LCK  ++ EA    D +I  GV+PD      +V+Y  L
Sbjct: 388 SFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPD------VVSYTIL 441

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  + +L   +   GL P+ VTY+  ++  C + ++D A  L+ +M  K V
Sbjct: 442 IDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDV 501

Query: 194 APNCVIFTTLM 204
            PN + +  ++
Sbjct: 502 KPNAITYNIIL 512



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 119/238 (50%), Gaps = 22/238 (9%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN ++YN +I+GL KEG VDKA  LF +M  +   PN+VTYNS+I G C A   +
Sbjct: 132 GYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMD 191

Query: 69  EAEYLFIEMMDR----------------GLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           +AE +  +M D+                GLQ DVVT+++++D  CK  +  EA  + D M
Sbjct: 192 KAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSM 251

Query: 113 IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
           ++ G  PDA+       Y  L+ G    G L +  +L   + + G+      +NI I A 
Sbjct: 252 VRRGQNPDAY------TYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAY 305

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             +E +DKA   F++M  KG +PN V +TT++    +       +     M    + P
Sbjct: 306 AKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSP 363



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 130/238 (54%), Gaps = 6/238 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            R   +  +P+ VTY+ +++G CK G VD A  L+ +M  +++ PN +TYN ++HG  +A
Sbjct: 459 GRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHA 518

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A   +++++D G+Q  + T+N+++  LC+N  +DEA R+       G+R   F +
Sbjct: 519 GRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQ-----GLRSKEF-Q 572

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           + +  +  +I GL K+G++ +A+ L  ++  +GL+P+ + Y + I +   +  ++++ +L
Sbjct: 573 LEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDEL 632

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           FL ME  G   N      ++   + K +  +    L  +D++     AS   +++ ++
Sbjct: 633 FLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLTKIDEKEYSVEASTAVLLISIV 690



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 45/262 (17%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---------- 62
           +P+ VTY+ +ID  CK G   +A+ +F  M     NP+  TY +L+HG+           
Sbjct: 222 QPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHD 281

Query: 63  -----------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                  YA +   ++A   FIEM  +G   +VVT+  ++D LC
Sbjct: 282 LLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILC 341

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  ++++A      M+  G+ PD      I+ +  LI GLC IG+ K   +LS  +   G
Sbjct: 342 KAGRVEDAVSHFSQMVSEGLSPD------IITFTSLIHGLCTIGEWKKVEKLSFEMINRG 395

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PN +  N  + +LC + ++ +AHD F  +   GV P+ V +T L+  +    +  + I
Sbjct: 396 IHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESI 455

Query: 218 ELLRSMDKRNVMP----YASIL 235
           +LL  M    + P    Y+++L
Sbjct: 456 KLLGRMVSIGLRPDNVTYSALL 477



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N +I    K   +DKA   F++M+ +  +PNVVTY ++I   C A    +A   F +M+
Sbjct: 298 FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMV 357

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             GL  D++TF  ++  LC   +  +  +L   MI  G+ P+A      +    ++D LC
Sbjct: 358 SEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNA------IFLNTIMDSLC 411

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A +    +   G+ P+VV+Y I I   C D +MD++  L   M   G+ P+ V
Sbjct: 412 KEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNV 471

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            ++ L+  + +       + L R M  ++V P A   +II+
Sbjct: 472 TYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIIL 512



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 115/254 (45%), Gaps = 37/254 (14%)

Query: 18  TYNTIIDGLCKEGFVDKAKE--------LFLQMKDENIN--PNVVTYNSLIHGFCYANDG 67
           T+  +I   C  G +D A E            M D+  N  PNV++YN +I+G     + 
Sbjct: 96  TFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGLFKEGEV 155

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           ++A  LF EM+ +G   ++VT+N ++D LCK + MD+A  +L  M               
Sbjct: 156 DKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDK------------ 203

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
                        G+L+ A  L + ++  GL P+VVTY++ I   C   +  +A ++F  
Sbjct: 204 -------------GQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDS 250

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M  +G  P+   + TL+  +  K     + +LL  M +  +     + +I++    KNE 
Sbjct: 251 MVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNET 310

Query: 248 SLNSIPQF--NRQK 259
              ++  F   RQK
Sbjct: 311 LDKAMTAFIEMRQK 324


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 6/235 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           +  +P+ VTY+++I G+CK     ++  L  +M   NI P+VVT++  +  FC     +E
Sbjct: 343 IAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSE 402

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ +   M++RGL+ +VVT+N +MD  C + +MDEA ++ D+M+  G  PD      +++
Sbjct: 403 AQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPD------VLS 456

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI G CK  ++  A++L   ++  GL PN +T+   I  LC   +   A +LF  M 
Sbjct: 457 YNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMG 516

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             G  P+ + ++TL+  F +     + + L  ++ K  + P   I  I++  + K
Sbjct: 517 SHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCK 571



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 29/248 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P  V+Y+ IID LCK   V++A +LF  M+   I+P VVTYNSLI+G C +    +A 
Sbjct: 240 CEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQAS 299

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            LF EM++  ++ DVVTF++++D LCK   + EA  +   MIQ  + PD           
Sbjct: 300 ILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGV 359

Query: 123 CEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C+                     ++V +   +D  CK G +  A+ +   +   GL PNV
Sbjct: 360 CKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNV 419

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTYN  +   C   QMD+A  +F  M  KG AP+ + +  L+  + +     +  +L   
Sbjct: 420 VTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDE 479

Query: 223 MDKRNVMP 230
           M  + + P
Sbjct: 480 MSHKGLTP 487



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 119/218 (54%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT++  +D  CK+G V +A+ +   M +  + PNVVTYNSL+ G+C  +  +EA  
Sbjct: 381 RPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARK 440

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M+++G   DV+++N+++   CK+ ++DEA +L D M   G+ P      N + +  
Sbjct: 441 VFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTP------NSITHTT 494

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+ G+   A+EL + +   G  P+++TY+  +   C    +D+A  LF  ++   
Sbjct: 495 LISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQ 554

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN VI   L+    +  +     EL  S+    + P
Sbjct: 555 LKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQP 592



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +T+NT+I+GLC EG + +A E    +      P V T+  +++G C     + A  
Sbjct: 171 KPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIV 230

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +M++   + +VV++++I+D LCKNR ++EA  L   M   G+ P       +V Y  
Sbjct: 231 WMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISP------TVVTYNS 284

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G+C  G+ K A  L + +    + P+VVT++I + ALC +  + +A  +F  M    
Sbjct: 285 LIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIA 344

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V +++L+    + +   +   LL  M  RN+ P     SI VD+  K
Sbjct: 345 MEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCK 396



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 90/152 (59%), Gaps = 8/152 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ ++YN +I G CK   +D+AK+LF +M  + + PN +T+ +LI G C A     A+
Sbjct: 450 CAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAK 509

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFCEINIVAY 130
            LF +M   G   D++T++ ++   CK+  +DEA  L + + +  ++P+   C+I     
Sbjct: 510 ELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKI----- 564

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
             L+ G+CK GKL++A+EL  SL+   L P+V
Sbjct: 565 --LLGGMCKAGKLEDAKELFSSLSIEELQPDV 594



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N ++  L +    D    ++ +M+   ++ +V T   LI+  C+ +       +
Sbjct: 102 PCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSV 161

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++   G +  ++TFN +++ LC   ++ EA   LD ++  G +P  +    IV     
Sbjct: 162 LGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIV----- 216

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            +GLCKIGK   A    + +      P VV+Y+I I +LC +  +++A DLF  M   G+
Sbjct: 217 -NGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGI 275

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +P  V + +L+       +  +   L + M + N+ P     SI+VD L K  + L ++ 
Sbjct: 276 SPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALS 335

Query: 254 QFNR 257
            F +
Sbjct: 336 VFGK 339



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 12/232 (5%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FGV C   T+T   +I+ LC    V     +  ++      P+++T+N+LI+G C     
Sbjct: 133 FGVSCSVYTLT--ILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRI 190

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA      +M RG Q  V T  +I++ LCK  K   A   +  M++        CE  +
Sbjct: 191 VEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELD------CEPEV 244

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V+Y  +ID LCK   +  A +L   +   G+ P VVTYN  I+ +CN  Q  +A  LF +
Sbjct: 245 VSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKE 304

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           M    + P+ V F+ L+ +  ++    + + +   M +  + P    Y+S++
Sbjct: 305 MLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLI 356


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 8/224 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R   + C P+ VTYN++IDG  K G +++ ++L  +M+     P+VVTYN+L++ FC   
Sbjct: 219 RMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFG 278

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A   F EM   G+ ++VVTF+  +D  CKN  + EA +L   M   G++P      
Sbjct: 279 RMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKP------ 332

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N V Y CL+DG CK G+L +A  L+  + + G+  NVVTY + +  LC + ++ +A D+F
Sbjct: 333 NEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVF 392

Query: 186 LDMEVKGVAPNCVIFTTLMPS-FIRKNETSKVIELLRSMDKRNV 228
             ME  G+  N +++TTL+   F+ KN + + + LL  M  + +
Sbjct: 393 RLMERAGIRANELLYTTLIHGHFVYKN-SERALSLLSEMKDKGM 435



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 41/284 (14%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C+P+ VTYN +++  CK G +++A   F +MK E +  NVVT+++ +  FC      
Sbjct: 257 GCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVR 316

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  LF +M  +G++ + VT+  ++D  CK  ++D+A  L + M+Q GV       +N+V
Sbjct: 317 EAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGV------PLNVV 370

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH------------------ 170
            Y  L+DGLCK GK+  A ++ + + RAG+  N + Y   IH                  
Sbjct: 371 TYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEM 430

Query: 171 -----------------ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
                             LCN +++D+A  L   M+  G+ PN VI+T +M +  +  + 
Sbjct: 431 KDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKE 490

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           S+ I LL+ M      P       +VD L K      +I  FN+
Sbjct: 491 SEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNK 534



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 117/260 (45%), Gaps = 29/260 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VT++T +D  CK G V +A +LF QM+ + + PN VTY  L+ G C A   ++A  L 
Sbjct: 298 NVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLT 357

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------------- 119
            EM+ +G+  +VVT+ V++D LCK  K+ EA  +  LM + G+R                
Sbjct: 358 NEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVY 417

Query: 120 --------------DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                         D   E+++  YG LI GLC + KL  A+ L   +   GL PN V Y
Sbjct: 418 KNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIY 477

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
              + A     +  +A  L   M   G  PN V +  L+    +     + I     M  
Sbjct: 478 TNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVD 537

Query: 226 RNVMPYASILSIIVDLLVKN 245
             + P     + +VD L KN
Sbjct: 538 LGLEPNVQAYTALVDGLCKN 557



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 6/192 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y  I+D   K     +A  L  +M D    PN+VTY +L+ G C A   +EA  
Sbjct: 471 KPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAIS 530

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M+D GL+ +V  +  ++D LCKN ++D+A  LLD MI  G+  D     N+V    
Sbjct: 531 HFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLD-----NVVCTS- 584

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG  K G L++A  L   +  +GL  ++  Y   +   CN   + +A ++  +M   G
Sbjct: 585 LMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENG 644

Query: 193 VAPNCVIFTTLM 204
           + P+ V++  L+
Sbjct: 645 ITPDAVVYNCLI 656



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 120/252 (47%), Gaps = 25/252 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND-GNEAEY 72
           P+ V  +T++  L   G +D A     ++++  + PN  T N ++   C A +  +E  +
Sbjct: 128 PSVV--DTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHIL--LCLARERSSELAW 183

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              E +      +V TFN+++D LCK   + EA  LL  M   G  PD      +V Y  
Sbjct: 184 RLFEQLP---APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPD------VVTYNS 234

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  K G+L+   +L   +   G  P+VVTYN  ++  C   +M++A+  F +M+ +G
Sbjct: 235 LIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREG 294

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD-----------L 241
           V  N V F+T + +F +     + ++L   M  + + P     + +VD           L
Sbjct: 295 VMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDAL 354

Query: 242 LVKNEISLNSIP 253
           ++ NE+    +P
Sbjct: 355 VLTNEMVQQGVP 366



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 6/134 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y  ++DGLCK G +DKA  L  +M D+ ++ + V   SL+ G     +  +A  
Sbjct: 541 EPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFA 600

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++ GLQ D+  +   +   C    + EA  +L  MI+ G+ PDA      V Y C
Sbjct: 601 LKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDA------VVYNC 654

Query: 133 LIDGLCKIGKLKNA 146
           LI+   K+G ++ A
Sbjct: 655 LINKCQKLGNMEEA 668



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 26/199 (13%)

Query: 77  MMDRGLQSDVV----------------TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           + DRGL  D V                T N I+  L + R  + A RL + +        
Sbjct: 138 LADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQLPAP----- 192

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+  +  +ID LCK G L  AR L   +   G  P+VVTYN  I       ++++
Sbjct: 193 -----NVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEE 247

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              L  +M   G  P+ V +  L+  F +     +       M +  VM      S  VD
Sbjct: 248 VEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVD 307

Query: 241 LLVKNEISLNSIPQFNRQK 259
              KN +   ++  F + +
Sbjct: 308 AFCKNGMVREAMKLFAQMR 326


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 129/231 (55%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYNT+I G CK   V+   ELF +M    +  + VTY +LI G  +  D + A+
Sbjct: 321 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 380

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+  G+  D++T+++++D LC N K+++A  + D M +  ++ D      I  Y 
Sbjct: 381 KVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD------IYIYT 434

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+ +  +L  SL+  G+ PNVVTYN  I  LC+   + +A+ L   M+  
Sbjct: 435 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 494

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  P+   + TL+ + +R  + +   EL+R M     +  AS + ++ ++L
Sbjct: 495 GPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 545



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN++I+G C    +DKAK++F  M  ++  P++ TYN+LI GFC +    +   L
Sbjct: 288 PDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 347

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  D VT+  ++  L  +   D A ++   M+  GV PD      I+ Y  L
Sbjct: 348 FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD------IMTYSIL 401

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLC  GKL+ A E+   + ++ +  ++  Y   I  +C   ++D   DLF  + +KGV
Sbjct: 402 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 461

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V + T++     K    +   LL+ M +   +P
Sbjct: 462 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP 498



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V +NTIID LCK   VD A  LF +M+ + I PNVVTY+SLI   C     ++A  
Sbjct: 182 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+++ +  ++VTFN ++D   K  K  EA +L D MI+  + PD F       Y  
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIF------TYNS 295

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+++ + +      P++ TYN  I   C  ++++   +LF +M  +G
Sbjct: 296 LINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG 355

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +TTL+       +     ++ + M    V P     SI++D L  N
Sbjct: 356 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 408



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTY  +++GLCK G +D A  L  +M+   I  +VV +N++I   C     ++A 
Sbjct: 146 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 205

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G++ +VVT++ ++  LC   +  +A++LL  MI+  + P      N+V + 
Sbjct: 206 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP------NLVTFN 259

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GK   A +L   + +  + P++ TYN  I+  C  +++DKA  +F  M  K
Sbjct: 260 ALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK 319

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              P+   + TL+  F +        EL R M  R ++
Sbjct: 320 DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 357



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN +I+  C+   +  A  L  +M      P++VT +SL++G+C+    ++A  L 
Sbjct: 44  NLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 103

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M++ G + D +TF  ++  L  + K  EA  L+D M+Q G +P      N+V YG ++
Sbjct: 104 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP------NLVTYGVVV 157

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G +  A  L   +  A +  +VV +N  I +LC    +D A +LF +ME KG+ 
Sbjct: 158 NGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 217

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           PN V +++L+         S   +LL  M ++ + P     + ++D  VK
Sbjct: 218 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 267



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY+++I  LC  G    A +L   M ++ INPN+VT+N+LI  F       EAE 
Sbjct: 217 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 276

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  D+ T+N +++  C + ++D+A ++ + M+     PD      +  Y  
Sbjct: 277 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD------LDTYNT 330

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  ++++  EL + ++  GL+ + VTY   I  L +D   D A  +F  M   G
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           V P+ + ++ L+       +  K +E+   M K  +
Sbjct: 391 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    +  A  L  QM +    P+ +T+ +LIHG    N  +EA  
Sbjct: 77  EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 136

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ RG Q ++VT+ V+++ LCK   +D A  LL+ M    +  D      +V +  
Sbjct: 137 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD------VVIFNT 190

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK   + +A  L + +   G+ PNVVTY+  I  LC+  +   A  L  DM  K 
Sbjct: 191 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 250

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V F  L+ +F+++ +  +  +L   M KR++ P
Sbjct: 251 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP 288



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+T+ T+I GL       +A  L  +M      PN+VTY  +++G C   D + A  
Sbjct: 112 RPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 171

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M    +++DVV FN I+D LCK R +D+A  L   M   G+RP      N+V Y  
Sbjct: 172 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP------NVVTYSS 225

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC  G+  +A +L   +    + PN+VT+N  I A   + +  +A  L  DM  + 
Sbjct: 226 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 285

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + +L+  F   +   K  ++   M  ++  P
Sbjct: 286 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP 323



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYNT+I GLC +  + +A  L  +MK++   P+  TYN+LI       D   +  
Sbjct: 462 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 521

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM       D  T  ++ + L   R
Sbjct: 522 LIREMRSCRFVGDASTIGLVANMLHDGR 549


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  V++NT+I G CK G V++   L   M+ E + P+V T+++LI+G C     +E   
Sbjct: 280 RPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSL 339

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  RGL  + VTF  ++D  CK  K+D A +   +M+  GVRPD      +V Y  
Sbjct: 340 LFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPD------LVTYNA 393

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK+G LK AR L   +T +GL P+ +T+   I   C D  M+ A ++   M  +G
Sbjct: 394 LINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEG 453

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V FT L+    R+        +L  M      P     ++++D   K
Sbjct: 454 IELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCK 505



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 125/246 (50%), Gaps = 7/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A + F  M  + + P++VTYN+LI+G C   D  EA  L
Sbjct: 351 PNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRL 410

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GL+ D +TF  ++D  CK+  M+ A  +   M++ G+      E++ VA+  L
Sbjct: 411 VNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGI------ELDDVAFTAL 464

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G++ +A  +   +  AG  P+  TY + I   C    +     L  +M+  G 
Sbjct: 465 ISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGH 524

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P  V +  LM    ++ +      LL +M    V P     +I++D   K+  S++ + 
Sbjct: 525 VPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVD-VD 583

Query: 254 QFNRQK 259
            FN +K
Sbjct: 584 IFNSEK 589



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 6/214 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           ++++  L+L++ D    P +  +N L+HGFC A D   A  +F E+  RGL+  VV+FN 
Sbjct: 229 IERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNT 288

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++   CK+  ++E  RL  +M   GV PD F       +  LI+GLCK G+L     L  
Sbjct: 289 LISGCCKSGDVEEGFRLKGVMESEGVCPDVF------TFSALINGLCKEGRLDEGSLLFD 342

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   GL+PN VT+   I   C   ++D A   F  M  +GV P+ V +  L+    +  
Sbjct: 343 EMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVG 402

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  +   L+  M    + P     + ++D   K+
Sbjct: 403 DLKEARRLVNEMTASGLKPDKITFTTLIDGCCKD 436



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 23/208 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +T+ T+IDG CK+G ++ A E+  +M +E I  + V + +LI G C     ++A  
Sbjct: 420 KPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGR 479

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G + D  T+ +++D  CK   +    +LL  M   G  P       +V Y  
Sbjct: 480 MLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVP------GVVTYNA 533

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-- 190
           L++GLCK G++KNA+ L  ++   G+ PN +TYNI +            H   +D+++  
Sbjct: 534 LMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDG-------HSKHGSSVDVDIFN 586

Query: 191 --KGVAPNCVIFTTLMPSFIRKNETSKV 216
             KG+  +   +T L+      NE+SK 
Sbjct: 587 SEKGLVTDYASYTALV------NESSKT 608



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 83/210 (39%), Gaps = 18/210 (8%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEAT----- 106
           +Y +++H  C      +A  L   ++ R G  S    F+ I+  + ++     +      
Sbjct: 121 SYCTMLHFLCLHRMLPQAHSLVSFLVSRKGTNSASTLFSSILRTMPRHHHHHHSVGLVFD 180

Query: 107 RLLDLMIQGGVRPDAFCEINIVA--------YGC--LIDGLCKIGKLKNARELSQSLT-- 154
            L+   +  G  PDA     +V          GC  L+  + ++  ++  R  +  L   
Sbjct: 181 ALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALYLEVL 240

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
            +G  P +  +N+ +H  C    +  A  +F ++  +G+ P  V F TL+    +  +  
Sbjct: 241 DSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVE 300

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +   L   M+   V P     S +++ L K
Sbjct: 301 EGFRLKGVMESEGVCPDVFTFSALINGLCK 330


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 121/244 (49%), Gaps = 6/244 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  +Y+ +I GLC+   VD+A EL  +M D    PNVVTY SL+ G C      EA 
Sbjct: 83  CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAV 142

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M+ RG   D V +NV++D   K   M EA RL + M++ G  P  F       Y 
Sbjct: 143 DLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVF------TYN 196

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G  + G+    + L + + R G +PN+ T+N  +   C    M +AH LFL+M   
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL 256

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+ V + TL+     K +  +   LLR M +  V P     +I++D   K+    ++
Sbjct: 257 GCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHA 316

Query: 252 IPQF 255
           I  F
Sbjct: 317 IKLF 320



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYN+++ G  ++G   + + LF  M  +   PN+ T+N+L+ GFC   D  EA 
Sbjct: 188 CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAH 247

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF+EM   G   DVV++N ++  +C   K  EA RLL  MI+ GV PD      IV+Y 
Sbjct: 248 RLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPD------IVSYN 301

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG  K G L +A +L   + ++GL P+  +Y+  I  LC   ++  A  +F DM   
Sbjct: 302 ILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN 361

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G AP+  +   L+    R    ++  EL ++M K   +P
Sbjct: 362 GSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVP 400



 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            T++YN +++ L K G  D     +  M      PN  TY  L+   C A    EA  +F
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  +G   +V ++++++  LC+ +K+DEA  LL+ MI GG +P      N+V YG L+
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP------NVVTYGSLL 129

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLCK+GKLK A +L   +   G  P+ V YN+ I        M +A+ LF +M  KG  
Sbjct: 130 SGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCI 189

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           P    + +L+  F RK E  +V  L + M ++  +P
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVP 225



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+N ++DG CK G + +A  LFL+M+     P+VV+YN+LI G C     +EA+
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQ 282

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+  G+  D+V++N+++D   K+  +D A +L   + + G+ PDAF      +Y 
Sbjct: 283 RLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAF------SYS 336

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +ID LC+ GK+  A  + + +   G  P+       +  LC  E++ ++ +LF  M   
Sbjct: 337 TIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKF 396

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              P    +  LM    +   +  V E+   + +R   P   I  +I++ L +++
Sbjct: 397 ECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSD 451



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 29/199 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT+I G+C +G   +A+ L  +M    + P++V+YN LI G+  +   + A 
Sbjct: 258 CPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAI 317

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV--- 128
            LF E+   GL+ D  +++ I+D LC+  K+  A  +   MI  G  PDA   I +V   
Sbjct: 318 KLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGL 377

Query: 129 --------------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                                      Y  L+  LCK  +  +  E+   LT  G  P+V
Sbjct: 378 CRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDV 437

Query: 163 VTYNITIHALCNDEQMDKA 181
               + +  L   +  D A
Sbjct: 438 EISKVILETLRRSDDKDAA 456



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
            +++N +++ L K+ + D      + M+  G  P      N   YG L+  LC+  + + 
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVP------NTYTYGYLLRSLCQAQRFEE 70

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           AR + + +   G  PNV +Y+I I  LC  +++D+A +L  +M   G  PN V + +L+ 
Sbjct: 71  ARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLS 130

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              +  +  + ++L   M  R   P   + ++++D   K 
Sbjct: 131 GLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKK 170


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 134/264 (50%), Gaps = 29/264 (10%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C+P+ V YNTI+D LCK+  V++A  +F +MK   I P VVTY SLIHG        E
Sbjct: 225 VGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKE 284

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--------- 120
           A  L  EM    +  D+V F+V++D +CK  ++ EA  +L  M + GV PD         
Sbjct: 285 AFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMN 344

Query: 121 AFC---EI-----------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
            +C   E+                 ++ ++  L++G CK  ++  A++L   +T  GL+P
Sbjct: 345 GYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIP 404

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           + V+YN  I  LC   +  +A +LF DM   G  PN V ++ L+    ++    + + L 
Sbjct: 405 DTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLF 464

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
           R+M+   + P     +I++D + K
Sbjct: 465 RAMENSGLKPDLVTYNIMIDGMCK 488



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 124/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V ++ +ID +CKEG V +A+ +   M +  + P+V TYN+L++G+C   +  EA  +
Sbjct: 299 PDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKV 358

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   DV +F+++++  CK +++DEA +L D M   G+ PD       V+Y  L
Sbjct: 359 FEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDT------VSYNTL 412

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+  +   A EL + +   G  PN+VTY+I +  L     +D+A  LF  ME  G+
Sbjct: 413 ISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGL 472

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+ V +  ++    +  +     EL   +  + + P   + +  +D + K 
Sbjct: 473 KPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKG 524



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 103/182 (56%), Gaps = 6/182 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +++ +++G CK   +D+AK+LF +M    + P+ V+YN+LI G C A    EAE L
Sbjct: 369 PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEEL 428

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M   G   ++VT+++++D L K   +D+A  L   M   G++PD      +V Y  +
Sbjct: 429 FKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPD------LVTYNIM 482

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG+CK GK K+AREL   L+  GL PN      TI  +C    +D+AH  F  ME    
Sbjct: 483 IDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDC 542

Query: 194 AP 195
           +P
Sbjct: 543 SP 544



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +T++T+I+G C EG + +A ELF  M      PNV +Y+ +I G C      E   
Sbjct: 158 EPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIK 217

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M   G + DVV +N I+D LCK+R ++EA  +   M   G+ P       +V Y  
Sbjct: 218 LLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILP------TVVTYTS 271

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GL  +G+ K A  L   +    +MP++V +++ I  +C + ++ +A  +   M   G
Sbjct: 272 LIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMG 331

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V P+   + TLM  +  + E  +  ++   M  +  MP     SI+V+
Sbjct: 332 VEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVN 379



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 115/236 (48%), Gaps = 7/236 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +  +   L +         L  QM+   I+ +V++   LI+ FC     +    +
Sbjct: 89  PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSV 148

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  GL+ +V+TF+ +++  C   K+  A  L D+M+  G +P      N+ +Y  +
Sbjct: 149 LGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKP------NVHSYSII 202

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC++GK     +L + +   G  P+VV YN  +  LC D  +++A  +F  M+  G+
Sbjct: 203 IKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGI 262

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK-NEIS 248
            P  V +T+L+          +   LL  M   N+MP     S+++D++ K  E+S
Sbjct: 263 LPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVS 318



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 60/110 (54%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ ++D L K+G++D+A  LF  M++  + P++VTYN +I G C      +A  L
Sbjct: 439 PNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDAREL 498

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           F E+  +GLQ +       +D +CK   +DEA +    M +    P   C
Sbjct: 499 FAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGC 548



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           N+A   F  M++      +V F  +   L + +       L   M   G+  D      +
Sbjct: 73  NDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHD------V 126

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           ++   LI+  C++  +     +   + + GL PNV+T++  I+  C + ++ +A +LF  
Sbjct: 127 LSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDV 186

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M  +G  PN   ++ ++    R  +T++VI+LL  M      P   I + IVD L K+ +
Sbjct: 187 MVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRL 246

Query: 248 SLNSIPQFNRQK 259
              ++  F + K
Sbjct: 247 VNEAVHIFCKMK 258


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 129/263 (49%), Gaps = 48/263 (18%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + KP+ V Y+TIID LCK   V +A  LF +M  + I+ +VVTYN+LI+GFC      
Sbjct: 191 GRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLK 250

Query: 69  EA---------------------------------------EY---LFIEMMDRGLQSDV 86
           EA                                        Y   L  EM DRG  +DV
Sbjct: 251 EAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADV 310

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           +T++ ++D LCKN  +D A  L + M   G+RP+ F       +  L+DGL K G+LK+A
Sbjct: 311 ITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMF------TFTILLDGLWKGGRLKDA 364

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
           +E+ Q L   G   NV TYN+ I+  C    +++A  +   ME  G  PN   F T++ +
Sbjct: 365 QEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIA 424

Query: 207 FIRKNETSKVIELLRSMDKRNVM 229
             +K+E  K  +LLR M  R ++
Sbjct: 425 LFKKDENDKAEKLLRQMIARGLL 447



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 7/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   +   P  + +N I+D   K         L  +++ + I P++ T N LI+ FC+ 
Sbjct: 48  NRMLCMRHTPPIIQFNKILDSFAKMKHYSTV-SLSHRLELKGIQPDLFTLNILINCFCHM 106

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                   +  +++ RG     VT N ++  LC   ++ +A    D ++  G       +
Sbjct: 107 GQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGF------Q 160

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +N V YG LI+G+CKIG  + A +L + +      P+VV Y+  I ALC  + + +A+ L
Sbjct: 161 LNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGL 220

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +M VKG++ + V + TL+  F    +  + I LL  M  + + P     +I+VD L K
Sbjct: 221 FSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCK 280



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 48/275 (17%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T N +I+  C  G +     +  ++      P+ VT N+LI G C      +A +
Sbjct: 90  QPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALH 149

Query: 73  LFIEMMDRGLQ-----------------------------------SDVVTFNVIMDELC 97
              +++ +G Q                                    DVV ++ I+D LC
Sbjct: 150 FHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALC 209

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K + + EA  L   M   G+  D      +V Y  LI G C +GKLK A  L   +    
Sbjct: 210 KYQLVSEAYGLFSEMTVKGISAD------VVTYNTLIYGFCIVGKLKEAIGLLNVMVLKT 263

Query: 158 LMPNVVTYNITIHALCNDEQMDKA-------HDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           + P+V TY I + ALC + ++ +A        DL  +M  +G   + + +++L+    + 
Sbjct: 264 INPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKN 323

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               + I L   M  + + P     +I++D L K 
Sbjct: 324 GHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKG 358


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 131/250 (52%), Gaps = 9/250 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY  IID LCK+G +D A   F +M+ + I  NV TYNSLI  FC     ++   
Sbjct: 262 KPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQ 321

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  +VVTF+ ++D L K  K+ EA  L + MI  G+ P      N + Y  
Sbjct: 322 LLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEP------NTITYNS 375

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC   +L  A ++   +   G  P++ TYNI I+  C  +Q+D    LF  M ++G
Sbjct: 376 LIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRG 435

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN---EISL 249
           +  + V ++TL+  F +  +     ++ + M  + V P     +I++D L  N   E +L
Sbjct: 436 MIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEAL 495

Query: 250 NSIPQFNRQK 259
             + Q ++ K
Sbjct: 496 GILDQMHKCK 505



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 122/239 (51%), Gaps = 13/239 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           MANG       C+PN  TY  I++ +CK G    A +L  +M+   I P+VVTY  +I  
Sbjct: 222 MANG-------CQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDN 274

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     ++A   F EM  +G++++V T+N ++   C   + D+  +LL  MI   + P 
Sbjct: 275 LCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITP- 333

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V +  LID L K GKL  A++L   +   G+ PN +TYN  I+ LCND+++D+
Sbjct: 334 -----NVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDE 388

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           A+ +   M  KG  P+   +  L+  F +  +    + L R M  R ++      S ++
Sbjct: 389 ANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLI 447



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 128/236 (54%), Gaps = 6/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYN +I+G CK   VD    LF +M    +  + VTY++LI GFC +     A+
Sbjct: 401 CDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAK 460

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM+ +G+   ++T+ +++D LC N +++EA  +LD M +  +      E++I  Y 
Sbjct: 461 KVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKM------ELDIGIYN 514

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C   K+ +A  L  SL   G+  ++ +YNI +  LC    + +A  LF  M+  
Sbjct: 515 IIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKED 574

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           G  P+   + TL+ + +R N+ +  ++L+  M +      AS + I++D+L   E+
Sbjct: 575 GYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDMLSSGEL 630



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  +PNTVT+NT+++GLC EG V +A EL   M      P+++T N++++G C  +  
Sbjct: 152 FKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRV 211

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +EA  L   MM  G Q +  T+  I++ +CK+     A  LL  M    ++P      ++
Sbjct: 212 SEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKP------HV 265

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  +ID LCK G+L +A      +   G+  NV TYN  I + C+  + D    L  D
Sbjct: 266 VTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRD 325

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M  + + PN V F+ L+ S +++ + ++  +L   M  R + P
Sbjct: 326 MITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEP 368



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 12/230 (5%)

Query: 18  TYNTIIDGLCKE---GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           T N +I+  C+    GF   A     ++  E   PN VT+N+L++G C      EA  L 
Sbjct: 127 TLNIMINCFCRRRKLGFAFSAMGKIFKLGYE---PNTVTFNTLLNGLCLEGRVFEAVELV 183

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+      D++T N I++ LC   ++ EA  L+  M+  G +P+ F       YG ++
Sbjct: 184 DCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQF------TYGPIL 237

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           + +CK G   +A +L + +    + P+VVTY I I  LC D ++D A   F +ME KG+ 
Sbjct: 238 NRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIK 297

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            N   + +L+ SF          +LLR M  R + P     S ++D LVK
Sbjct: 298 ANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVK 347



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 10/222 (4%)

Query: 28  KEGFVDKAKE----LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ 83
           + G VD  K+    LF  M      P V+ +N L          +    L  +M  +G+ 
Sbjct: 63  RSGLVDIKKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIA 122

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
            D+ T N++++  C+ RK+  A   +  + + G  P      N V +  L++GLC  G++
Sbjct: 123 YDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEP------NTVTFNTLLNGLCLEGRV 176

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
             A EL   +  +  +P+++T N  ++ LC  +++ +A DL   M   G  PN   +  +
Sbjct: 177 FEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPI 236

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +    +   T+  ++LLR M+ R + P+    +II+D L K+
Sbjct: 237 LNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKD 278


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + T+IDGLC+   + +AK +FL M    + P V  YNSLIHG   +    EA   
Sbjct: 276 PNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAF 335

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E++ +GL+ D  T ++++  LC   +M  ATR L++M Q G+       +N  AY  L
Sbjct: 336 FQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGI------ALNAAAYNVL 389

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  CK G L  A      ++  G+ PNVVTY+  I     + +M+ A  ++ +M  KGV
Sbjct: 390 IDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGV 449

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V +T L+    +  +      L + M+++ +   A  +S++VD L +
Sbjct: 450 EPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCR 500



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 103/191 (53%), Gaps = 4/191 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV  +PN VTY+++IDG  K G ++ A  ++ +M  + + PNVVTY +LIHG     D
Sbjct: 411 EVGV--EPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGD 468

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI- 125
            + A +L  EM ++G+ S+ +T +V++D LC+  ++ +A R + +   G  + +    I 
Sbjct: 469 MDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFI-MEYSGQKKSEKNPSIA 527

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N V Y  LI GL   G+   A      +  +G++P+  TY + I  LC    +  A  L+
Sbjct: 528 NSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLY 587

Query: 186 LDMEVKGVAPN 196
            DM   GV P 
Sbjct: 588 ADMVKVGVKPT 598



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 114/261 (43%), Gaps = 29/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+I+    +G V KA E++ QM    I+PNVVTY ++I   C  +   +AE L
Sbjct: 171 PSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCIGDAEGL 230

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
           F+EM + G++ ++ T+N +M    K   +  A      +++ G+ P         D  C+
Sbjct: 231 FLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCQ 290

Query: 125 IN--------------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
            N                    +  Y  LI G  + G  + A    Q + R GL P+  T
Sbjct: 291 ANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPDEFT 350

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
            +I +  LC+  QM  A      M+  G+A N   +  L+  + +     + +     M 
Sbjct: 351 CSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMS 410

Query: 225 KRNVMPYASILSIIVDLLVKN 245
           +  V P     S ++D   KN
Sbjct: 411 EVGVEPNVVTYSSLIDGHSKN 431



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P     N I+DGL K   + +  ELF +M    + P+VVTYN+LI+   +  D  +A  +
Sbjct: 136 PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEV 195

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+ R +  +VVT+  ++  LC+   + +A  L   M + G+RP      N+  Y  L
Sbjct: 196 WDQMVARRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGMRP------NLYTYNAL 249

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +    K   +K+A      L + GL+PN V +   I  LC   ++ +A ++FLDM    V
Sbjct: 250 MSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEV 309

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           AP   ++ +L+    R     + +   + + ++ + P     SI+V
Sbjct: 310 APTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPDEFTCSIVV 355



 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T + ++ GLC  G +  A      M+   I  N   YN LI  +C + + +EA  
Sbjct: 345 RPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALV 404

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               M + G++ +VVT++ ++D   KN +M+ A  +   M+  GV P      N+V Y  
Sbjct: 405 TCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEP------NVVTYTA 458

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           LI G  K G +  A  L + +   G+  N +T ++ +  LC + ++  A
Sbjct: 459 LIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDA 507



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
             ++  L +    D+A  +F ++++    P +   N+++ G   A+       LF EM+ 
Sbjct: 110 GVLVIALSQMALPDEALSVFGRLREL---PALPACNAILDGLVKAHMLARVWELFDEMLG 166

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           RG+   VVT+N +++       + +A  + D M+   + P      N+V Y  +I  LC+
Sbjct: 167 RGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDP------NVVTYTTMICALCE 220

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
              + +A  L   +  AG+ PN+ TYN  + +    + +  A   + D+   G+ PN VI
Sbjct: 221 EDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVI 280

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           FTTL+    + N  ++   +   M +  V P   + + ++
Sbjct: 281 FTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLI 320


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  T+NT+IDG C    +D   EL  +M +  +  +  TYN+LIHGFC   D N A 
Sbjct: 385 CSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAAL 444

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-----GVRPDAFCEIN 126
            L  +M+  G+  D+VT N ++D LC N K+ +A  +   M +        RP    E +
Sbjct: 445 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPD 504

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LI GL   GK   A EL + +   G++PN +TY+  I+ LC   ++D+A  +F 
Sbjct: 505 VQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFD 564

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
            M  K  +P+ V F TL+  + +       +EL   M +R ++  A
Sbjct: 565 SMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADA 610



 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 109/212 (51%), Gaps = 6/212 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN +IDG C  G   +A+ L  +M +  INPNVVTY++LI+ +       EAE L
Sbjct: 282 PDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEEL 341

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+ RG+  + +T+N ++D  CK  ++D A  +  +M   G  PD F       +  L
Sbjct: 342 YDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVF------TFNTL 395

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C   ++ +  EL   +T  GL+ +  TYN  IH  C    ++ A DL   M   GV
Sbjct: 396 IDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGV 455

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            P+ V   TL+       +    +E+ ++M K
Sbjct: 456 CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQK 487



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 125/243 (51%), Gaps = 17/243 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +I+   KE    +A+EL+ +M    I PN +TYNS+I GFC  N  + AE++
Sbjct: 317 PNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHM 376

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  +G   DV TFN ++D  C  +++D+ T LL  M + G+  D         Y  L
Sbjct: 377 FYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADT------TTYNTL 430

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME---- 189
           I G C +G L  A +LSQ +  +G+ P++VT N  +  LC++ ++  A ++F  M+    
Sbjct: 431 IHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 490

Query: 190 -------VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
                    GV P+   +  L+   I + +  +  EL + M  R ++P     S +++ L
Sbjct: 491 DLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGL 550

Query: 243 VKN 245
            K 
Sbjct: 551 CKQ 553



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y+ IIDGL K+G    A  L+ +M+++ I P++ TYN +I GFC +   +EA+ 
Sbjct: 246 KPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQR 305

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM++R +  +VVT++ +++   K RK  EA  L D M+  G+ P      N + Y  
Sbjct: 306 LLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIP------NTITYNS 359

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK  +L  A  +   +   G  P+V T+N  I   C  +++D   +L  +M   G
Sbjct: 360 MIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETG 419

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  +   + TL+  F    + +  ++L + M    V P     + ++D L  N
Sbjct: 420 LVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN 472



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 124/234 (52%), Gaps = 7/234 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F  +C+PN VT+ T+++GLC+EG V +A  L  +M ++ + PN +TY +++ G C   D 
Sbjct: 170 FHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDT 229

Query: 68  NEAEYLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             A  L  +M +   ++ +VV ++ I+D L K+ +  +A  L   M + G+ PD F    
Sbjct: 230 VSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLF---- 285

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y C+IDG C  G+   A+ L Q +    + PNVVTY+  I+A   + +  +A +L+ 
Sbjct: 286 --TYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYD 343

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +M  +G+ PN + + +++  F ++N       +   M  +   P     + ++D
Sbjct: 344 EMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLID 397



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  ++N +I   C    +  A   F ++      P+VVT+++L+HG C  +  +EA  LF
Sbjct: 111 DVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLF 170

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M     + +VVTF  +M+ LC+  ++ EA  LLD M++ G++P      N + YG ++
Sbjct: 171 HQM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQP------NQITYGTIV 220

Query: 135 DGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           DG+CKIG   +A  L + +   + + PNVV Y+  I  L  D +   AH+L+ +M+ KG+
Sbjct: 221 DGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGI 280

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   +  ++  F      S+   LL+ M +R + P     S +++  VK
Sbjct: 281 FPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVK 331



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 15/243 (6%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG + K    P+ VT++T++ GLC E  V +A +LF QM      PNVVT+ +L++G C 
Sbjct: 135 FGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCR 190

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAF 122
                EA  L   M++ GLQ + +T+  I+D +CK      A  LL  M +   ++P   
Sbjct: 191 EGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKP--- 247

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V Y  +IDGL K G+  +A  L   +   G+ P++ TYN  I   C+  +  +A 
Sbjct: 248 ---NVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQ 304

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            L  +M  + + PN V ++ L+ +++++ +  +  EL   M  R ++P     + ++D  
Sbjct: 305 RLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGF 364

Query: 243 VKN 245
            K 
Sbjct: 365 CKQ 367



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 18/224 (8%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIH 59
           VC P+ VT NT++DGLC  G +  A E+F  M+              + P+V TYN LI 
Sbjct: 455 VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILIS 513

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G        EAE L+ EM  RG+  + +T++ +++ LCK  ++DEAT++ D M      P
Sbjct: 514 GLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 573

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           D      +V +  L+ G CK G++ +  EL   + R G++ + +TY   IH       ++
Sbjct: 574 D------VVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNIN 627

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            A D+F +M   GV P+ +   +++     K E  + + +L  +
Sbjct: 628 GALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDL 671



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 7/189 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           + +R F  V +P+  TYN +I GL  EG   +A+EL+ +M    I PN +TY+S+I+G C
Sbjct: 493 DASRPFNGV-EPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLC 551

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
             +  +EA  +F  M  +    DVVTFN ++   CK  ++D+   L   M + G+  DA 
Sbjct: 552 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADA- 610

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                + Y  LI G  K+G +  A ++ Q +  +G+ P+ +T    +  L + E++ +A 
Sbjct: 611 -----ITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAV 665

Query: 183 DLFLDMEVK 191
            +  D+++ 
Sbjct: 666 AMLEDLQMS 674



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L  GF       +A  LF +M+       V+ FN +M  + +  + D    L   M +  
Sbjct: 48  LRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQ 107

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +  D +      ++  LI   C   KL  A      +T+ G  P+VVT++  +H LC ++
Sbjct: 108 IPCDVY------SFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVED 161

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++ +A DLF  M      PN V FTTLM    R+    + + LL  M +  + P      
Sbjct: 162 RVSEALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYG 217

Query: 237 IIVDLLVK 244
            IVD + K
Sbjct: 218 TIVDGMCK 225


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 26/243 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +T+  +I+   +EG   +AK+ + +M    I+P+V TYNS+IHG C     +EA+ +
Sbjct: 242 PNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQI 301

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV---------------- 117
              M+ +G   DVVT+N +++  CK +++DE T+L+  M Q G+                
Sbjct: 302 LDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQ 361

Query: 118 --RPDAFCEI--------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
             RPDA  EI        NI  Y  L+ GLC   +++ A  L +S+ ++ +  ++ TYNI
Sbjct: 362 AGRPDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNI 421

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            IH +C    ++ A DLF  +  KG+ P+ V +TT++  F RK    K   L R M +  
Sbjct: 422 VIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDG 481

Query: 228 VMP 230
           ++P
Sbjct: 482 LLP 484



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 17/244 (6%)

Query: 3   NGNREFGVV----------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVV 52
            GNR FG V          CK + V YNTIIDG CK G V+ A  LF +M+ + +  + V
Sbjct: 151 QGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTV 210

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           TYNSL+ G C +   ++A  L  +M+ R +  +V+TF  +++   +  K  EA +  + M
Sbjct: 211 TYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEM 270

Query: 113 IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
           I+  + PD F       Y  +I GLC  G++  A+++   +   G  P+VVTYN  I+  
Sbjct: 271 IRRCIDPDVF------TYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGF 324

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPY 231
           C  +++D+   L  +M  +G+  + V F T++  + +        E+   M  R N+  Y
Sbjct: 325 CKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMGSRPNIRTY 384

Query: 232 ASIL 235
           + +L
Sbjct: 385 SILL 388



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++I+G C+   V  A +L  +M++     +VV YN++I GFC     N A  
Sbjct: 136 EPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALV 195

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M   G+++D VT+N ++  LC + +  +A RL+  M+   + P      N++ +  
Sbjct: 196 LFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVP------NVITFTA 249

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+   + GK   A++  + + R  + P+V TYN  IH LC   Q+D+A  +   M  KG
Sbjct: 250 LINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKG 309

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P+ V + TL+  F +     +  +L+R M +R ++
Sbjct: 310 CFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLV 346



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D+A +LF  M      P++V ++ L+     + + +    LF  M   G+  D+ T+N+
Sbjct: 50  LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++ LC+  +   A  ++  M++ G  PD      +V    LI+G C+  ++  A +L  
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPD------VVTVSSLINGFCQGNRVFGAVDLVS 163

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +       +VV YN  I   C    ++ A  LF  ME  GV  + V + +L+       
Sbjct: 164 KMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSG 223

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             S    L+R M  R+++P     + +++  V+
Sbjct: 224 RRSDAARLMRDMVMRDIVPNVITFTALINAFVR 256



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 59/107 (55%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY+ ++ GLC    V+KA  LF  M+   +  ++ TYN +IHG C   +  +A  
Sbjct: 378 RPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWD 437

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           LF  +  +GL+ DVVT+  ++   C+ R  D+A  L   M + G+ P
Sbjct: 438 LFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGLLP 484



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 6/158 (3%)

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +DEA  L   MIQ    P      +IV +  L+  + K         L  ++   G+  +
Sbjct: 50  LDEAIDLFCNMIQSRPLP------SIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHD 103

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           + TYNI I+ LC   +   A  +   M   G  P+ V  ++L+  F + N     ++L+ 
Sbjct: 104 LYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVS 163

Query: 222 SMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            M++        I + I+D   K  +  N++  F R +
Sbjct: 164 KMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRME 201


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 125/239 (52%), Gaps = 7/239 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   KP+ V Y TII  LCK   +  A +L+ +M  + I+PNV TY +LIHGFC   +  
Sbjct: 194 GHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLK 253

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM  + +  DV TFN+++D L K  K+DEA  L + M    + P      NIV
Sbjct: 254 EAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFP------NIV 307

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LIDGLCK   L+ A  L + +   G+ PNV +Y I + ALC   +++ A   F  +
Sbjct: 308 TYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHL 367

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA-SILSIIVDLLVKNE 246
            VKG   N   +  ++    +      V++L   M+ +  MP A +  +II  LL K+E
Sbjct: 368 LVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDE 426



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +A+ NR   +   P T  +N I+  L K         LF Q +   I P++ T + LI+ 
Sbjct: 46  VASFNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINC 105

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+      A  +F  ++ RG   + +T N ++  LC   ++  A    D ++  G + D
Sbjct: 106 FCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLD 165

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  V+YG LI+GLCK G+ K    L + L    + P++V Y   IH LC ++ +  
Sbjct: 166 Q------VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGD 219

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A DL+ +M VKG++PN   +TTL+  F       +   LL  M  +N+ P     +I++D
Sbjct: 220 ACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILID 279

Query: 241 LLVK 244
            L K
Sbjct: 280 ALAK 283



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 6/159 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           FN I+  L KN++      L       G+ PD  C ++I     LI+  C +  +  A  
Sbjct: 64  FNNILSSLVKNKRYPTVISLFKQFEPNGITPD-LCTLSI-----LINCFCHLTHITFAFS 117

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           +  ++ + G  PN +T N  I  LC   ++ +A      +  +G   + V + TL+    
Sbjct: 118 VFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLC 177

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +  ET  V  LLR ++  +V P   + + I+  L KN++
Sbjct: 178 KAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKL 216



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 2/112 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+  +PN  +Y  ++D LCK G ++ AK+ F  +  +  + NV TYN +I+G C A 
Sbjct: 333 KEQGI--QPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAG 390

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
              +   L  +M  +G   + +TF  I+  L +  + D+A + L  MI  G+
Sbjct: 391 LFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIARGL 442


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CK+G  + A ++  +M    + PNVV YN+++ G C A    EAE
Sbjct: 254 CTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAE 313

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM       D VTFN+++D  C+N  +D    LL+ M++ G  PD      ++ Y 
Sbjct: 314 DLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPD------VITYT 367

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L ++++  G  PN ++Y I +  LC  E+   A +L   M  +
Sbjct: 368 TVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQ 427

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  PN V F TL+    +K    + IELL+ M      P     S ++D L K
Sbjct: 428 GCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 480



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG VD+A  L   M      PN ++Y  ++ G C A    +A+
Sbjct: 359 CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQ 418

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+ +G   + VTFN +++ +CK    ++A  LL  M+  G  PD      +++Y 
Sbjct: 419 ELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPD------LISYS 472

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK + A EL   +   G+ PN + Y+    AL  + + DK   +F  ++  
Sbjct: 473 TVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDA 532

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            V  +  ++  ++ S  ++ ET + I+    M     MP  S  +I++
Sbjct: 533 TVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILI 580



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 8/219 (3%)

Query: 12  CKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           CKPNT++Y  ++ GLC+ E +VD A+EL   M  +   PN VT+N+LI+  C      +A
Sbjct: 394 CKPNTISYTIVLKGLCRAERWVD-AQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQA 452

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  +M+  G   D+++++ ++D L K  K +EA  LL++MI  G+ P      N + Y
Sbjct: 453 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITP------NTIIY 506

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +   L + G+     ++  S+  A +  +   YN  I +LC   + D+A D F  M  
Sbjct: 507 SSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVS 566

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            G  PN   +T L+     +    +  +LL  +  R  +
Sbjct: 567 NGCMPNESTYTILIRGLASEGLVREAQDLLSELCSRRAV 605



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 18/256 (7%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFL----------QMKDENINPNVVTYNS 56
            FG  C+P+ V+YN ++ GLC     D  +EL +          QM +    P++  Y +
Sbjct: 206 SFG--CEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYAT 263

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           +I G C       A  +   M   GL+ +VV +N ++  LC   + +EA  LL  M Q  
Sbjct: 264 IIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQED 323

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
                 C ++ V +  L+D  C+ G +    EL + +   G +P+V+TY   I+  C + 
Sbjct: 324 ------CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEG 377

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
            +D+A  L  +M   G  PN + +T ++    R        EL+  M ++  +P     +
Sbjct: 378 LVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFN 437

Query: 237 IIVDLLVKNEISLNSI 252
            +++ + K  ++  +I
Sbjct: 438 TLINFMCKKGLAEQAI 453



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 4/223 (1%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C       + I++  C+ G    A      +  +    +    N ++   C     +E  
Sbjct: 139 CAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGV 198

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG----GVRPDAFCEINI 127
            L  ++   G + D+V++N ++  LC  ++ D+   L+  M++        P+  C  ++
Sbjct: 199 ELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDL 258

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  +IDG+CK G  + A ++   +   GL PNVV YN  +  LC+ E+ ++A DL  +
Sbjct: 259 RMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAE 318

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M  +    + V F  L+  F +     +VIELL  M +   +P
Sbjct: 319 MFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIP 361


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 132/246 (53%), Gaps = 8/246 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA- 70
           C P+ VT+N +I+ LC++G + +A ++  +M      PN ++YN L+HGFC     + A 
Sbjct: 117 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAI 176

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           +YL I M+ RG   D+VT+N ++  LCK+ K+D A  LL+ +   G  P       ++ Y
Sbjct: 177 QYLEI-MVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSP------VLITY 229

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGL K+GK   A EL   +   GL P+V+TY+  I  L  + ++++A   F D+E 
Sbjct: 230 NTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEG 289

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            GV PN   + ++M    +  +T + I+ L  M  +   P     +I+++ +    ++  
Sbjct: 290 FGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKE 349

Query: 251 SIPQFN 256
           ++   N
Sbjct: 350 ALELLN 355



 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ VTYN +++G+CKEG +D+A +    M      PNV+T+N ++   C      +AE
Sbjct: 47  CKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAE 106

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +G    VVTFN++++ LC+   +  A  +L+ M      P   C  N ++Y 
Sbjct: 107 KLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKM------PTHGCTPNSLSYN 160

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G CK  K+  A +  + +   G  P++VTYN  + ALC D ++D A +L   +  K
Sbjct: 161 PLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSK 220

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           G +P  + + T++    +  +T + +ELL  M  + + P    Y+S+++
Sbjct: 221 GCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIA 269



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 120/240 (50%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +R+    C P+ +TY  +I+  C E  V +A +L  +M      P+VVTYN L++G C  
Sbjct: 5   DRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKE 64

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA      M   G Q +V+T N+I+  +C   +  +A +LL  M++ G  P     
Sbjct: 65  GRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSP----- 119

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++V +  LI+ LC+ G L  A ++ + +   G  PN ++YN  +H  C +++MD+A   
Sbjct: 120 -SVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQY 178

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M  +G  P+ V + T++ +  +  +    +ELL  +  +   P     + ++D L K
Sbjct: 179 LEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSK 238



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 6/182 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT++  LCK+G VD A EL  Q+  +  +P ++TYN++I G       ++A 
Sbjct: 187 CYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAV 246

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +GL+ DV+T++ ++  L +  K++EA +    +   GV+P+AF       Y 
Sbjct: 247 ELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAF------TYN 300

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLCK  +   A +    +   G  P  V+Y I I  + N+    +A +L  ++  +
Sbjct: 301 SIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSR 360

Query: 192 GV 193
           GV
Sbjct: 361 GV 362



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FGV  KPN  TYN+I+ GLCK    D+A +    M  +   P  V+Y  LI G       
Sbjct: 290 FGV--KPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLA 347

Query: 68  NEAEYLFIEMMDRGL 82
            EA  L  E+  RG+
Sbjct: 348 KEALELLNELCSRGV 362


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  T+ T+IDG C    +D   EL  +M    +  N VTYN+LIHGFC   D N A 
Sbjct: 391 CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAAL 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-----CEIN 126
            L  +M+  G+  D+VT N ++D LC N K+ +A  +   M +  +  DA       E +
Sbjct: 451 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPD 510

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           ++ Y  LI GL   GK   A EL + +   G++P+ +TY+  I  LC   ++D+A  +F+
Sbjct: 511 VLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFV 570

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
            M  K  +PN V F TL+  + +       +EL   M +R ++  A I
Sbjct: 571 SMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAII 618



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y+ IID LCK+G    A+ LF +M+++ I P++ TYNS+I GFC +   ++AE L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++R +  DVVT+N +++   K  K  EA  L D M+  G+ P      N + Y  +
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIP------NTITYNSM 366

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +L  A ++   +   G  P+V T+   I   C  +++D   +L  +M  +G+
Sbjct: 367 IDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 426

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             N V + TL+  F    + +  ++L + M    V P     + ++D L  N
Sbjct: 427 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN 478



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 129/228 (56%), Gaps = 17/228 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT+TYN++IDG CK+  +D A+++F  M  +  +P+V T+ +LI G+C A   ++   L
Sbjct: 358 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 417

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RGL ++ VT+N ++   C    ++ A  L   MI  GV PD      IV    L
Sbjct: 418 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD------IVTCNTL 471

Query: 134 IDGLCKIGKLKNARELSQSLTRA-----------GLMPNVVTYNITIHALCNDEQMDKAH 182
           +DGLC  GKLK+A E+ +++ ++           G+ P+V+TYNI I  L N+ +  +A 
Sbjct: 472 LDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAE 531

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +L+ +M  +G+ P+ + +++++    +++   +  ++  SM  ++  P
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSP 579



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 124/253 (49%), Gaps = 29/253 (11%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG + K    P+ VT+ T++ GLC E  V +A + F QM +    PNVVT+ +L++G C 
Sbjct: 137 FGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN----------RKMDEATRLLDLMI 113
                EA  L   MM+ GLQ   +T+  I+D +CK           RKM+E + ++    
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIP--- 253

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
                       N+V Y  +ID LCK G+  +A+ L   +   G+ P++ TYN  I   C
Sbjct: 254 ------------NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           +  +   A  L  +M  + ++P+ V +  L+ +F+++ +  +  EL   M  R ++P   
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 361

Query: 234 ILSIIVDLLVKNE 246
             + ++D   K +
Sbjct: 362 TYNSMIDGFCKQD 374



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++N +I   C    +  A   F ++    ++P+VVT+ +L+HG C  +  +EA   F +M
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +   + +VVTF  +M+ LC+  ++ EA  LLD M++ G++P        + YG ++DG+
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ------ITYGTIVDGM 229

Query: 138 CKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           CK G   +A  L + +   + ++PNVV Y+  I +LC D +   A +LF +M+ KG+ P+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + +++  F      S   +LL+ M +R + P     + +++  VK
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 18/224 (8%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIH 59
           VC P+ VT NT++DGLC  G +  A E+F  M+              + P+V+TYN LI 
Sbjct: 461 VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILIC 519

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G        EAE L+ EM  RG+  D +T++ ++D LCK  ++DEAT++   M      P
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSP 579

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                 N+V +  LI+G CK G++ +  EL   + R G++ + + Y   I+       ++
Sbjct: 580 ------NVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNIN 633

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            A D+F +M   GV P+ +    ++  F  K E  + + +L  +
Sbjct: 634 GALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 677



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L  GF       +A  LF +M+       VV F  +M  + +  + D    L   M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +R D      I ++  LI   C   KL  A      +T+ GL P+VVT+   +H LC ++
Sbjct: 110 IRCD------IYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVED 163

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++ +A D F  M      PN V FTTLM    R+    + + LL  M +  + P      
Sbjct: 164 RVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 237 IIVDLLVKNEISLNSI 252
            IVD + K   +++++
Sbjct: 224 TIVDGMCKKGDTVSAL 239


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y TIIDG+CK+G  + A ++  +M    + PNVV YN+++ G C A    EAE
Sbjct: 279 CTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAE 338

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM       D VTFN+++D  C+N  +D    LL+ M++ G  PD      ++ Y 
Sbjct: 339 DLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPD------VITYT 392

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK G +  A  L ++++  G  PN ++Y I +  LC  E+   A +L   M  +
Sbjct: 393 TVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQ 452

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  PN V F TL+    +K    + IELL+ M      P     S ++D L K
Sbjct: 453 GCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 505



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY T+I+G CKEG VD+A  L   M      PN ++Y  ++ G C A    +A+
Sbjct: 384 CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQ 443

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+ +G   + VTFN +++ +CK   +++A  LL  M+  G  PD      +++Y 
Sbjct: 444 ELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPD------LISYS 497

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK + A EL   +   G+ PN + Y+    AL  + + DK   +F  ++  
Sbjct: 498 TVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDA 557

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            V  +  ++  ++ S  ++ ET + I+    M     MP  S  +I++
Sbjct: 558 TVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILI 605



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  ++   N ++  +C++G VD+  EL  ++      P++V+YN+++ G C A   ++ E
Sbjct: 174 CTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVE 233

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L +EM+  G   +V TFN ++  LC+N   ++    L  M + G  PD      +  Y 
Sbjct: 234 ELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPD------LRMYA 287

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG+CK G  + A ++   +   GL PNVV YN  +  LC+ E+ ++A DL  +M  +
Sbjct: 288 TIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQE 347

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
               + V F  L+  F +     +VIELL  M +   +P
Sbjct: 348 DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIP 386



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 8/219 (3%)

Query: 12  CKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           CKPNT++Y  ++ GLC+ E +VD A+EL   M  +   PN VT+N+LI+  C      +A
Sbjct: 419 CKPNTISYTIVLKGLCRAERWVD-AQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQA 477

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  +M+  G   D+++++ ++D L K  K +EA  LL++MI  G+ P      N + Y
Sbjct: 478 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITP------NTIIY 531

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +   L + G+     ++  S+  A +  +   YN  I +LC   + D+A D F  M  
Sbjct: 532 SSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVS 591

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            G  PN   +T L+     +    +  +LL  +  R  +
Sbjct: 592 NGCMPNESTYTILIRGLASEGLVREAQDLLSELCSRRAV 630



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            FG  C+P+ V+YN ++ GLC     D  +EL ++M      PNV T+N+LI   C    
Sbjct: 206 SFG--CEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGL 263

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +      +M + G   D+  +  I+D +CK+   + A  +L  M   G++P      N
Sbjct: 264 FEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKP------N 317

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  ++ GLC   + + A +L   + +     + VT+NI +   C +  +D+  +L  
Sbjct: 318 VVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLE 377

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M   G  P+ + +TT++  F ++    + + LL++M      P     +I++  L + E
Sbjct: 378 QMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAE 437



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 9/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
             V YN +I G C+ G V  A+ L   +    + PN  TY  ++   C      +A  + 
Sbjct: 75  GVVAYNAMIAGYCRAGQVAAARRLAAAVP---VPPNAYTYFPIVRSLCARGLIADALTVL 131

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  RG  +     +VI++  C+      A R L ++   G   D+    N+V     +
Sbjct: 132 DEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSG-NCNLV-----V 185

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             +C+ G +    EL + L   G  P++V+YN  +  LC  ++ D   +L ++M   G  
Sbjct: 186 SAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCP 245

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           PN   F TL+    R     +V E L  M +    P   + + I+D + K+
Sbjct: 246 PNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKD 296



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  I+  LC  G +  A  +  +M            + ++   C       A   
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +  +G   D    N+++  +C+   +DE   LL  +      P   CE +IV+Y  +
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKL------PSFGCEPDIVSYNAV 219

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC   +  +  EL   + R G  PNV T+N  I  LC +   ++ H+    M   G 
Sbjct: 220 LKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGC 279

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
            P+  ++ T++    +        ++L  M     K NV+ Y ++L
Sbjct: 280 TPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVL 325



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C       + I++  C+ G    A      +  +    +    N ++   C     +E  
Sbjct: 139 CAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGV 198

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++   G + D+V++N ++  LC  ++ D+   L+  M++ G  P      N+  + 
Sbjct: 199 ELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPP------NVATFN 252

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G  +   E    +   G  P++  Y   I  +C D   + A+D+   M   
Sbjct: 253 TLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSY 312

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN V + T++          +  +LL  M + +        +I+VD   +N
Sbjct: 313 GLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQN 366


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 17/232 (7%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +T+NT+IDG C    +D   EL  +M +  +  +  TYN+LIHGF    D N A 
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAAL 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-----------GVRPD 120
            L  EM+  GL  D+VT + ++D LC N K+ +A  +  +M +            GV PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +  Y  LI GL   GK   A EL + +   G++P+ +TY+  I  LC   ++D+
Sbjct: 511 ------VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           A  +F  M  K  +PN V FTTL+  + +       +EL   M +R ++  A
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y+ IID LCK+G    A+ LF +M+++ I P++ TYNS+I GFC +   ++AE L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++R +  DVVT+N +++   K  K  EA  L D M+  G+ P      N + Y  +
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP------NTITYSSM 366

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +L  A  +   +   G  PN++T+N  I   C  +++D   +L  +M   G+
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             +   + TL+  F    + +  ++LL+ M    + P       ++D L  N
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++  +I   C    +  A   F ++    ++P+VVT+N+L+HG C  +  +EA  LF +M
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +   + +VVTF  +M+ LC+  ++ EA  LLD M++ G++P        + YG ++DG+
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ------ITYGTIVDGM 229

Query: 138 CKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           CKIG   +A +L + +   + ++PNVV Y+  I +LC D +   A +LF +M+ KG+ P+
Sbjct: 230 CKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + +++  F      S   +LL+ M +R + P     + +++  VK
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 11/243 (4%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG + K    P+ VT+NT++ GLC E  V +A  LF QM +    PNVVT+ +L++G C 
Sbjct: 137 FGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAF 122
                EA  L   MM+ GLQ   +T+  I+D +CK      A  LL  M +   + P   
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIP--- 253

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V Y  +ID LCK G+  +A+ L   +   G+ P++ TYN  I   C+  +   A 
Sbjct: 254 ---NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            L  +M  + ++P+ V +  L+ +F+++ +  +  EL   M  R ++P     S ++D  
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 243 VKN 245
            K 
Sbjct: 371 CKQ 373



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 17/221 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIHGFC 62
           P+ VT +T++DGLC  G +  A E+F  M+              + P+V TYN LI G  
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 EAE L+ EM  RG+  D +T++ ++D LCK  ++DEAT++ D M      P   
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP--- 579

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V +  LI+G CK G++ +  EL   + R G++ N +TY   I        ++ A 
Sbjct: 580 ---NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           D+F +M   GV P+ +    ++     K E  + + +L  +
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +I GL  EG   +A+EL+ +M    I P+ +TY+S+I G C  +  +EA  
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +    +VVTF  +++  CK  ++D+   L   M + G+  +A      + Y  
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA------ITYIT 621

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           LI G  K+G +  A ++ Q +  +G+ P+ +T    +  L + E++ +A
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 670



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 6/188 (3%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L  GF       +A  LF +M+       VV F  +M  + +  + D    L   M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +R D      I ++  LI   C   KL  A      +T+ GL P+VVT+N  +H LC ++
Sbjct: 110 IRCD------IYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVED 163

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++ +A +LF  M      PN V FTTLM    R+    + + LL  M +  + P      
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 237 IIVDLLVK 244
            IVD + K
Sbjct: 224 TIVDGMCK 231


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 127/245 (51%), Gaps = 8/245 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N   E G+  KP+ V Y TIID LCK G V+ A  LF QM++  I P+VV Y SL++G
Sbjct: 164 MVNQMVEMGI--KPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C +    +A+ L   M  R ++ DV+TFN ++D   K  K  +A  L + MI+  + P 
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP- 280

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                NI  Y  LI+G C  G +  AR++   +   G  P+VV Y   I+  C  +++D 
Sbjct: 281 -----NIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDD 335

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  +F +M  KG+  N + +TTL+  F +  + +   E+   M  R V P     ++++ 
Sbjct: 336 AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLH 395

Query: 241 LLVKN 245
            L  N
Sbjct: 396 CLCYN 400



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 44/253 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY ++I+G C EG VD+A+++F  M+ +   P+VV Y SLI+GFC     ++A  +
Sbjct: 280 PNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKI 339

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  +GL  + +T+  ++    +  K + A  +   M+  GV P      NI  Y  L
Sbjct: 340 FYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPP------NIRTYNVL 393

Query: 134 IDGLCKIGKLKNARELSQSLTRA---GLMPNVVTYNITIHALCNDEQMDKAHDLFLDME- 189
           +  LC  GK+K A  + + + +    G+ PN+ TYN+ +H LC + +++KA  +F DM  
Sbjct: 394 LHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRK 453

Query: 190 ----------------------------------VKGVAPNCVIFTTLMPSFIRKNETSK 215
                                              KGV PN V +TT++    R+    +
Sbjct: 454 REMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHE 513

Query: 216 VIELLRSMDKRNV 228
              L R M +  V
Sbjct: 514 AHVLFRKMKEDGV 526



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T N +++  C+      A     +M      P++VT+ SLI+GFC  N   EA  +  +M
Sbjct: 109 TCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQM 168

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++ G++ DVV +  I+D LCKN  ++ A  L D M   G+RPD      +V Y  L++GL
Sbjct: 169 VEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPD------VVMYTSLVNGL 222

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G+ ++A  L + +T+  + P+V+T+N  I A   + +   A +L+ +M    +APN 
Sbjct: 223 CNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNI 282

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             +T+L+  F  +    +  ++   M+ +   P
Sbjct: 283 FTYTSLINGFCMEGCVDEARQMFYLMETKGCFP 315



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 34/216 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y ++I+G CK   VD A ++F +M  + +  N +TY +LI GF      N A+
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQ 372

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ---GGVRPDAFCEINIV 128
            +F  M+ RG+  ++ T+NV++  LC N K+ +A  + + M +    GV P+ +   N++
Sbjct: 373 EVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIW-TYNVL 431

Query: 129 AYGCLIDG------------------------------LCKIGKLKNARELSQSLTRAGL 158
            +G   +G                              +CK GK+KNA  L  SL   G+
Sbjct: 432 LHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGV 491

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            PNVVTY   I  L  +    +AH LF  M+  GV+
Sbjct: 492 KPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +  +++ + K    D    L   ++   ++ ++ T N L++ FC ++    A   
Sbjct: 70  PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF 129

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM  G + D+VTF  +++  C   +M+EA  +++ M++ G++PD      +V Y  +
Sbjct: 130 LGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPD------VVMYTTI 183

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK G +  A  L   +   G+ P+VV Y   ++ LCN  +   A  L   M  + +
Sbjct: 184 IDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKI 243

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ + F  L+ +F+++ +     EL   M + ++ P
Sbjct: 244 KPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP 280



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 6/224 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           ++A +LF  M +    P+++ +  L++        +    L   +   G+  D+ T N++
Sbjct: 54  NEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLL 113

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           M+  C++ +   A+  L  M++ G  PD      IV +  LI+G C   +++ A  +   
Sbjct: 114 MNCFCQSSQPYLASSFLGKMMKLGFEPD------IVTFTSLINGFCLGNRMEEAMSMVNQ 167

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G+ P+VV Y   I +LC +  ++ A  LF  ME  G+ P+ V++T+L+        
Sbjct: 168 MVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
                 LLR M KR + P     + ++D  VK    L++   +N
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYN 271


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 5/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY+T+I+GLCK+G VD A ELF  M+  N  PNVVT+N LI G C A    EA 
Sbjct: 298 CSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEAR 357

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+  M + G   D++T+N ++D LCK+ ++DEA +L   + + GV        N V Y 
Sbjct: 358 QLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSA-----ANAVTYS 412

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L  G   +G++ +A  +   L   G  P++ TY   I   C   +  +  +L  +M  K
Sbjct: 413 TLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASK 472

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P     + ++      N T + I+L  SM  R     A I +++V+ + +
Sbjct: 473 GFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMAR 525



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 12/231 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N +I+G CK   +D A +L   M ++   PNV T+  LI G C AN   EA+ L
Sbjct: 230 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 289

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G   +VVT++ +++ LCK  ++D+A  L  LM +    P      N+V +  L
Sbjct: 290 LEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPP------NVVTHNIL 343

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  +++ AR+L   +   G  P+++TYN  I  LC   Q+D+A  LF  +   GV
Sbjct: 344 IDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 403

Query: 194 -APNCVIFTTLMPSFI---RKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            A N V ++TL   +    R  +  ++  +L  +DK      A+  S+I++
Sbjct: 404 SAANAVTYSTLFHGYAALGRMADACRIFSML--VDKGFSPDLATYTSLILE 452



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 132/246 (53%), Gaps = 7/246 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+  +I GLCK   V +A++L  +M     +PNVVTY+++I+G C     ++A 
Sbjct: 263 CVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAY 322

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M  R    +VVT N+++D LCK ++++EA +L   M + G  PD      I+ Y 
Sbjct: 323 ELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD------IITYN 376

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            LIDGLCK  ++  A +L Q++  +G+   N VTY+   H      +M  A  +F  +  
Sbjct: 377 SLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVD 436

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
           KG +P+   +T+L+  + + +   +V+EL+  M  +   P  + LS ++  L +   +  
Sbjct: 437 KGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTER 496

Query: 251 SIPQFN 256
           +I  F+
Sbjct: 497 AIQLFD 502



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 122/234 (52%), Gaps = 7/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY  ++  LCK G  D+A+ +  +M  +   P+ VT+++LI G C      +A 
Sbjct: 122 CAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAF 181

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELC-KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            +  +++ RG+ +    F  I+  LC K   ++ A+++L ++I  G  P       ++ +
Sbjct: 182 RVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTP------TVLMF 235

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I+G CK   L +A +L + +   G +PNV T+ I I  LC   ++ +A  L   M +
Sbjct: 236 NLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVM 295

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G +PN V ++T++    ++ +     EL + M++RN  P     +I++D L K
Sbjct: 296 GGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCK 349



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 95/188 (50%), Gaps = 9/188 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM---KDENINPNVVTYNSLIHGFCYANDGN 68
           C  + + YN +++G+ +    DKA  +  Q+   +D   NP+    ++L+   C     +
Sbjct: 509 CTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTD 568

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A+ L  +M +RG  + V ++N ++  L + ++ DEAT++ + M+  G  P+    +N+V
Sbjct: 569 DAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPE-ISTVNVV 627

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
                I  LC   K+ +A EL Q +++ G  P++ T N  I   C   + D A  L  +M
Sbjct: 628 -----ISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEM 682

Query: 189 EVKGVAPN 196
              G+ PN
Sbjct: 683 TEAGLEPN 690



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 115/294 (39%), Gaps = 72/294 (24%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP-NVVTYNSLIHGFCYA 64
           RE G  C P+ +TYN++IDGLCK   VD+A +LF  + +  ++  N VTY++L HG+   
Sbjct: 364 RETG--CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAAL 421

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM---------------------- 102
               +A  +F  ++D+G   D+ T+  ++ E CK  +                       
Sbjct: 422 GRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTL 481

Query: 103 -------------DEATRLLDLMIQGGVRPDAFCEINIVAYG------------------ 131
                        + A +L D M   G   DA    N+V  G                  
Sbjct: 482 SAVLGGLFEGNHTERAIQLFDSMAARGCTDDALI-YNLVVEGMARASKHDKALAVLEQVI 540

Query: 132 ---------------CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
                           L++ LC++GK  +A++L   ++  G    V +YN  +  L   +
Sbjct: 541 DKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQ 600

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + D+A  +F  M   G AP       ++       +     EL++ M K    P
Sbjct: 601 RWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCP 654



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 6/154 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++   + +++ LC+ G  D AK+L  +M +      V +YN L+ G       +EA  +
Sbjct: 549 PSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQV 608

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+  G   ++ T NV++  LC   K+D+A  L+  M + G  PD      I     L
Sbjct: 609 FEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPD------IETCNTL 662

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           I G CK G+   AR+L + +T AGL PN  T+++
Sbjct: 663 IGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDL 696



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 105/301 (34%), Gaps = 76/301 (25%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  + N  +D LC+     +A  LF         PN  TY  LI GF  A D + A  L 
Sbjct: 21  NVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLL 80

Query: 75  IEMMDRGLQS----------------------------------DVVTFNVIMDELCKNR 100
            EM   G +                                   DV+T+  ++  LCK  
Sbjct: 81  EEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAG 140

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA-RELSQSLTRA--- 156
           K DEA  +L  M+  G  PD       V +  LIDGLCK G  + A R L   + R    
Sbjct: 141 KFDEAQGMLREMVAQGCAPDT------VTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGN 194

Query: 157 --------------------------------GLMPNVVTYNITIHALCNDEQMDKAHDL 184
                                           G  P V+ +N+ I+  C  + +D A+ L
Sbjct: 195 SDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKL 254

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M  KG  PN   FT L+    + N   +  +LL  M      P     S +++ L K
Sbjct: 255 LEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCK 314

Query: 245 N 245
            
Sbjct: 315 Q 315



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   T N +I  LC    VD A EL  +M      P++ T N+LI G+C +   + A  L
Sbjct: 619 PEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKL 678

Query: 74  FIEMMDRGLQSDVVTFNVI 92
             EM + GL+ +  T +++
Sbjct: 679 LEEMTEAGLEPNDTTHDLL 697



 Score = 40.4 bits (93), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL 57
           C P+  T NT+I G CK G  D A++L  +M +  + PN  T++ L
Sbjct: 652 CCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 7/232 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDG 67
           G  C+P+ VTYNT+I G CK   ++KA E+F  +K  ++ +P+VVTY S+I G+C A   
Sbjct: 234 GFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKM 293

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA  L  +M+  G+    VTFNV++D   K  +M  A  +   MI  G  PD      +
Sbjct: 294 REASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD------V 347

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V +  LIDG C++G++     L + +   G+ PN  TY+I I+ALCN+ ++ KA +L   
Sbjct: 348 VTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQ 407

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +  K + P   ++  ++  F +  + ++   ++  M+K+   P     +I++
Sbjct: 408 LASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 6/236 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G VC P+ VTY ++I G CK G + +A  L   M    I P  VT+N L+ G+  A +  
Sbjct: 270 GSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEML 329

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            AE +  +M+  G   DVVTF  ++D  C+  ++ +  RL + M   G+ P+AF      
Sbjct: 330 TAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAF------ 383

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI+ LC   +L  AREL   L    ++P    YN  I   C   ++++A+ +  +M
Sbjct: 384 TYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEM 443

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           E K   P+ + FT L+     K    + + +   M      P    +S ++  L+K
Sbjct: 444 EKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLK 499



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELF-LQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           N++++ L K   V+ A +LF   ++ ++ N +  T+N LI G C      +A  L   M 
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMS 233

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G + D+VT+N ++   CK+ ++++A+ +   +  G V     C  ++V Y  +I G C
Sbjct: 234 GFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSV-----CSPDVVTYTSMISGYC 288

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GK++ A  L   + R G+ P  VT+N+ +       +M  A ++   M   G  P+ V
Sbjct: 289 KAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVV 348

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            FT+L+  + R  + S+   L   M+ R + P A   SI+++ L
Sbjct: 349 TFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINAL 392



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VT+N ++DG  K G +  A+E+  +M      P+VVT+ SLI G+C     ++   L
Sbjct: 310 PTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRL 369

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM  RG+  +  T++++++ LC   ++ +A  LL  +    + P  F       Y  +
Sbjct: 370 WEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPF------MYNPV 423

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK GK+  A  + + + +    P+ +T+ I I   C   +M +A  +F  M   G 
Sbjct: 424 IDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGC 483

Query: 194 APNCVIFTTLMPSFIRKN---ETSKVIELLRSMDKRNVMP 230
           +P+ +  ++L+   ++     E   + ++ R     NV+P
Sbjct: 484 SPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVP 523



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY+ +I+ LC E  + KA+EL  Q+  ++I P    YN +I GFC A   NEA  +
Sbjct: 380 PNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVI 439

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +  + D +TF +++   C   +M EA  +   M+  G  PD       +    L
Sbjct: 440 VEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDK------ITVSSL 493

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVV-----TYNITIHA 171
           +  L K G  K A  L+Q + R G   NVV     T N T+ A
Sbjct: 494 LSCLLKAGMAKEAYHLNQ-IARKGQSNNVVPPETKTANATLAA 535



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 28/227 (12%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           NI  +  TYN L    C A   + A  +F  M   G+  +      ++    +  K+  A
Sbjct: 98  NIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFA 157

Query: 106 T-----------------RLLDLMIQGGVRPDA---------FCEIN-IVAYGCLIDGLC 138
           T                  LL+ +++     DA         F   N    +  LI GLC
Sbjct: 158 TALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLC 217

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV-APNC 197
            +GK + A EL   ++  G  P++VTYN  I   C   +++KA ++F D++   V +P+ 
Sbjct: 218 GVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDV 277

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V +T+++  + +  +  +   LL  M +  + P     +++VD   K
Sbjct: 278 VTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAK 324



 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ +T+  +I G C +G + +A  +F +M     +P+ +T +SL+     A    EA 
Sbjct: 448 CKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA- 506

Query: 72  YLFIEMMDRGLQSDVV 87
           Y   ++  +G  ++VV
Sbjct: 507 YHLNQIARKGQSNNVV 522


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 17/232 (7%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +T+NT+IDG C    +D   EL  +M +  +  +  TYN+LIHGF    D N A 
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAAL 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-----------GVRPD 120
            L  EM+  GL  D+VT + ++D LC N K+ +A  +  +M +            GV PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +  Y  LI GL   GK   A EL + +   G++P+ +TY+  I  LC   ++D+
Sbjct: 511 ------VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           A  +F  M  K  +PN V FTTL+  + +       +EL   M +R ++  A
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y+ IID LCK+G    A+ LF +M+++ I P++ TYNS+I GFC +   ++AE L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++R +  DVVT+N +++   K  K  EA  L D M+  G+ P      N + Y  +
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP------NTITYSSM 366

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +L  A  +   +   G  PN++T+N  I   C  +++D   +L  +M   G+
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             +   + TL+  F    + +  ++LL+ M    + P       ++D L  N
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 25/242 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+NT++ GLC E  V +A  LF QM +    PNVVT+ +L++G C      EA  L
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVAL 206

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKN----------RKMDEATRLLDLMIQGGVRPDAFC 123
              MM+ GLQ   +T+  I+D +CK           RKM+E + ++              
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIP------------- 253

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N+V Y  +ID LCK G+  +A+ L   +   G+ P++ TYN  I   C+  +   A  
Sbjct: 254 --NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQ 311

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           L  +M  + ++P+ V +  L+ +F+++ +  +  EL   M  R ++P     S ++D   
Sbjct: 312 LLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFC 371

Query: 244 KN 245
           K 
Sbjct: 372 KQ 373



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 122/261 (46%), Gaps = 42/261 (16%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           ++ F   C+PN VT+ T+++GLC+EG + +A  L  +M ++ + P  +TY +++ G C  
Sbjct: 173 HQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232

Query: 65  NDG------------------------------------NEAEYLFIEMMDRGLQSDVVT 88
            D                                     ++A+ LF EM ++G+  D+ T
Sbjct: 233 GDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           +N ++   C + +  +A +LL  M++  + PD      +V Y  LI+   K GK   A E
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPD------VVTYNALINAFVKEGKFFEAEE 346

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           L   +   G++PN +TY+  I   C   ++D A  +F  M  KG +PN + F TL+  + 
Sbjct: 347 LYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC 406

Query: 209 RKNETSKVIELLRSMDKRNVM 229
                   +ELL  M +  ++
Sbjct: 407 GAKRIDDGMELLHEMTETGLV 427



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++  +I   C    +  A   F ++    ++P+VVT+N+L+HG C  +  +EA  LF +M
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +   + +VVTF  +M+ LC+  ++ EA  LLD M++ G++P        + YG ++DG+
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ------ITYGTIVDGM 229

Query: 138 CKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           CK G   +A  L + +   + ++PNVV Y+  I +LC D +   A +LF +M+ KG+ P+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + +++  F      S   +LL+ M +R + P     + +++  VK
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 17/221 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIHGFC 62
           P+ VT +T++DGLC  G +  A E+F  M+              + P+V TYN LI G  
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 EAE L+ EM  RG+  D +T++ ++D LCK  ++DEAT++ D M      P   
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP--- 579

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V +  LI+G CK G++ +  EL   + R G++ N +TY   I        ++ A 
Sbjct: 580 ---NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           D+F +M   GV P+ +    ++     K E  + + +L  +
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +I GL  EG   +A+EL+ +M    I P+ +TY+S+I G C  +  +EA  
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +    +VVTF  +++  CK  ++D+   L   M + G+  +A      + Y  
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA------ITYIT 621

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           LI G  K+G +  A ++ Q +  +G+ P+ +T    +  L + E++ +A
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 670



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L  GF       +A  LF +M+       VV F  +M  + +  + D    L   M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +R D      I ++  LI   C   KL  A      LT+ GL P+VVT+N  +H LC ++
Sbjct: 110 IRCD------IYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVED 163

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++ +A +LF  M      PN V FTTLM    R+    + + LL  M +  + P      
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 237 IIVDLLVKNEISLNSI 252
            IVD + K   +++++
Sbjct: 224 TIVDGMCKKGDTVSAL 239


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 17/232 (7%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +T+NT+IDG C    +D   EL  +M +  +  +  TYN+LIHGF    D N A 
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAAL 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-----------GVRPD 120
            L  EM+  GL  D+VT + ++D LC N K+ +A  +  +M +            GV PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +  Y  LI GL   GK   A EL + +   G++P+ +TY+  I  LC   ++D+
Sbjct: 511 ------VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           A  +F  M  K  +PN V FTTL+  + +       +EL   M +R ++  A
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y+ IID LCK+G    A+ LF +M+++ I P++ TYNS+I GFC +   ++AE L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++R +  DVVT+N +++   K  K  EA  L D M+  G+ P      N + Y  +
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP------NTITYSSM 366

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +L  A  +   +   G  PN++T+N  I   C  +++D   +L  +M   G+
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             +   + TL+  F    + +  ++LL+ M    + P       ++D L  N
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 124/252 (49%), Gaps = 29/252 (11%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG + K    P+ VT+NT++ GLC E  V +A  LF QM +    PNVVT+ +L++G C 
Sbjct: 137 FGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN----------RKMDEATRLLDLMI 113
                EA  L   MM+ GLQ   +T+  I+D +CK           RKM+E + ++    
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIP--- 253

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
                       N+V Y  +ID LCK G+  +A+ L   +   G+ P++ TYN  I   C
Sbjct: 254 ------------NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           +  +   A  L  +M  + ++P+ V +  L+ +F+++ +  +  EL   M  R ++P   
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 234 ILSIIVDLLVKN 245
             S ++D   K 
Sbjct: 362 TYSSMIDGFCKQ 373



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++  +I   C    +  A   F ++    ++P+VVT+N+L+HG C  +  +EA  LF +M
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +   + +VVTF  +M+ LC+  ++ EA  LLD M++ G++P        + YG ++DG+
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ------ITYGTIVDGM 229

Query: 138 CKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           CK G   +A  L + +   + ++PNVV Y+  I +LC D +   A +LF +M+ KG+ P+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + +++  F      S   +LL+ M +R + P     + +++  VK
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 17/221 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIHGFC 62
           P+ VT +T++DGLC  G +  A E+F  M+              + P+V TYN LI G  
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 EAE L+ EM  RG+  D +T++ ++D LCK  ++DEAT++ D M      P   
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP--- 579

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V +  LI+G CK G++ +  EL   + R G++ N +TY   I        ++ A 
Sbjct: 580 ---NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           D+F +M   GV P+ +    ++     K E  + + +L  +
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +I GL  EG   +A+EL+ +M    I P+ +TY+S+I G C  +  +EA  
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +    +VVTF  +++  CK  ++D+   L   M + G+  +A      + Y  
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA------ITYIT 621

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           LI G  K+G +  A ++ Q +  +G+ P+ +T    +  L + E++ +A
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 670



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L  GF       +A  LF +M+       VV F  +M  + +  + D    L   M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +R D      I ++  LI   C   KL  A      +T+ GL P+VVT+N  +H LC ++
Sbjct: 110 IRCD------IYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVED 163

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++ +A +LF  M      PN V FTTLM    R+    + + LL  M +  + P      
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 237 IIVDLLVKNEISLNSI 252
            IVD + K   +++++
Sbjct: 224 TIVDGMCKKGDTVSAL 239


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+++GLCKE  +  A+EL  +MK+  + P++ T+ +LIHG+C   +  +A 
Sbjct: 365 CLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKAL 424

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F  + D+ L+ D+VT+N ++D +C+   + +A  L D M    + P      N V Y 
Sbjct: 425 QFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFP------NHVTYS 478

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID  C+ G++ NA      +   G++PN++TYN  I   C    + K       M   
Sbjct: 479 ILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHD 538

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            V P+ + + TL+  ++++ +  +   LL+ M+  NV P A   ++I+
Sbjct: 539 KVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMII 586



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 124/257 (48%), Gaps = 29/257 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  VTYN+++ GL + G  DKA+E+F  M    + P+V ++N LI GFC A +  EA  
Sbjct: 226 KPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALR 285

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
            + EM  R +  DVV+F+ ++    +  +MD A   L  M + G+ PD          FC
Sbjct: 286 FYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFC 345

Query: 124 EINI-----------VAYGCLID---------GLCKIGKLKNARELSQSLTRAGLMPNVV 163
              +           VA+GCL D         GLCK  +L +A EL   +   G+ P++ 
Sbjct: 346 RAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLC 405

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T+   IH  C D  ++KA   F  +  + + P+ V + TL+    R+ +  K  EL   M
Sbjct: 406 TFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDM 465

Query: 224 DKRNVMPYASILSIIVD 240
             R + P     SI++D
Sbjct: 466 HSREIFPNHVTYSILID 482



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  +E GV   P+  T+ T+I G C++G ++KA + F  + D+ + P++VTYN+LI G C
Sbjct: 393 NEMKERGV--PPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMC 450

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
              D  +A  L+ +M  R +  + VT+++++D  C+  ++D A   LD M+  G+ P   
Sbjct: 451 RQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVP--- 507

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              NI+ Y  +I G C+ G +   ++    +    +MP+++TYN  IH    + +M +A 
Sbjct: 508 ---NIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAF 564

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +L   ME + V P+ V +  ++  F       +   + + M  R + P
Sbjct: 565 NLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEP 612



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYNT+IDG+C++G + KA EL+  M    I PN VTY+ LI   C     + A  
Sbjct: 436 RPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFA 495

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM+++G+  +++T+N I+   C++  + +  + L  M    V PD      ++ Y  
Sbjct: 496 FLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPD------LITYNT 549

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K GK+  A  L + +    + P+ VTYN+ I        M +A  ++  M  +G
Sbjct: 550 LIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARG 609

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + +++   +    + K  +L   M ++ + P
Sbjct: 610 IEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAP 647



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           + G+     + +  +   N   N  T N ++H +C      E + +  EM  R +  DVV
Sbjct: 136 RAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVV 195

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           T NV++D   +   ++ A  L+D M+  G++P       +V Y  ++ GL + G+   AR
Sbjct: 196 THNVMVDARFRAGDVEAAMALIDSMVSKGIKP------GLVTYNSVLKGLLRNGRWDKAR 249

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           E+ +++   G+ P+V ++N+ I   C   ++++A   + +M  + V P+ V F+ L+  F
Sbjct: 250 EVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLF 309

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
            R+ E     E LR M +  +MP   I ++++    +  + L ++
Sbjct: 310 TRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEAL 354



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 6/183 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +ID  C++G VD A     +M ++ I PN++TYNS+I G+C + + ++ +  
Sbjct: 472 PNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQF 531

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M    +  D++T+N ++    K  KM EA  LL +M    V+PDA      V Y  +
Sbjct: 532 LPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDA------VTYNMI 585

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G    G ++ A  + + +   G+ P+  TY   I+         K+  L  +M  KG+
Sbjct: 586 ISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGL 645

Query: 194 APN 196
           AP+
Sbjct: 646 APD 648



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN II G    G + +A  ++ +M    I P+  TY S+I+G   A +  ++  
Sbjct: 576 QPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQ 635

Query: 73  LFIEMMDRGLQSD 85
           L  EM+ +GL  D
Sbjct: 636 LHDEMLQKGLAPD 648


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 17/232 (7%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +T+NT+IDG C    +D   EL  +M +  +  +  TYN+LIHGF    D N A 
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAAL 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-----------GVRPD 120
            L  EM+  GL  D+VT + ++D LC N K+ +A  +  +M +            GV PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +  Y  LI GL   GK   A EL + +   G++P+ +TY+  I  LC   ++D+
Sbjct: 511 ------VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           A  +F  M  K  +PN V FTTL+  + +       +EL   M +R ++  A
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y+ IID LCK+G    A+ LF +M+++ I P++ TYNS+I GFC +   ++AE L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++R +  DVVT+N +++   K  K  EA  L D M+  G+ P      N + Y  +
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP------NTITYSSM 366

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +L  A  +   +   G  PN++T+N  I   C  +++D   +L  +M   G+
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             +   + TL+  F    + +  ++LL+ M    + P       ++D L  N
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 29/252 (11%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG + K    P+ VT+ T++ GLC E  V +A  LF QM +    PNVVT+ +L++G C 
Sbjct: 137 FGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN----------RKMDEATRLLDLMI 113
                EA  L   MM+ GLQ   +T+  I+D +CK           RKM+E + ++    
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIP--- 253

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
                       N+V Y  +ID LCK G+  +A+ L   +   G+ P++ TYN  I   C
Sbjct: 254 ------------NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           +  +   A  L  +M  + ++P+ V +  L+ +F+++ +  +  EL   M  R ++P   
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 234 ILSIIVDLLVKN 245
             S ++D   K 
Sbjct: 362 TYSSMIDGFCKQ 373



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++N +I   C    +  A   F ++    ++P+VVT+ +L+HG C  +  +EA  LF +M
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQM 175

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +   + +VVTF  +M+ LC+  ++ EA  LLD M++ G++P        + YG ++DG+
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ------ITYGTIVDGM 229

Query: 138 CKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           CK G   +A  L + +   + ++PNVV Y+  I +LC D +   A +LF +M+ KG+ P+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + +++  F      S   +LL+ M +R + P     + +++  VK
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 17/221 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIHGFC 62
           P+ VT +T++DGLC  G +  A E+F  M+              + P+V TYN LI G  
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 EAE L+ EM  RG+  D +T++ ++D LCK  ++DEAT++ D M      P   
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP--- 579

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V +  LI+G CK G++ +  EL   + R G++ N +TY   I        ++ A 
Sbjct: 580 ---NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           D+F +M   GV P+ +    ++     K E  + + +L  +
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +I GL  EG   +A+EL+ +M    I P+ +TY+S+I G C  +  +EA  
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +    +VVTF  +++  CK  ++D+   L   M + G+  +A      + Y  
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA------ITYIT 621

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           LI G  K+G +  A ++ Q +  +G+ P+ +T    +  L + E++ +A
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 670



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L  GF       +A  LF +M+       VV F  +M  + +  + D    L   M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +R D      I ++  LI   C   KL  A      +T+ GL P+VVT+   +H LC ++
Sbjct: 110 IRCD------IYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVED 163

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++ +A +LF  M      PN V FTTLM    R+    + + LL  M +  + P      
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 237 IIVDLLVKNEISLNSI 252
            IVD + K   +++++
Sbjct: 224 TIVDGMCKKGDTVSAL 239


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  + Y TIIDGLCK   +D A  LF +M+ + I PNVVTY+SLI   C     ++A  
Sbjct: 253 EPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 312

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  DV TF+ ++D   K  K+ EA +L D M++  + P      +IV Y  
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP------SIVTYSS 366

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+++ + +      P+VV+Y+  I   C  +++D+  +LF +M  +G
Sbjct: 367 LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRG 426

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V +TTL+    +  +     E+ + M    V P     + ++D L KN
Sbjct: 427 LVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y+T+I G CK   VD+  ELF +M    +  N VTY +LI G   A D + A+
Sbjct: 392 CFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQ 451

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM+  G+  +++T+N ++D LCKN K+++A  + + + +  + P       I  Y 
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP------TIYTYN 505

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++  +L  +L+  G+ P+VV YN  I   C     ++A  LF +M+  
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  +     EL++ M        AS + ++ ++L
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY  +++GLCK G  D A  L  +M+   + P V+ Y ++I G C     ++A 
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDAL 276

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G++ +VVT++ ++  LC   +  +A+RLL  MI+  + PD F       + 
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF------TFS 330

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GKL  A +L   + +  + P++VTY+  I+  C  +++D+A  +F  M  K
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
              P+ V ++TL+  F +     + +EL R M +R    N + Y +++
Sbjct: 391 HCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TY+ +I+  C+   +  A  +  +M      PN+VT +SL++G+C++   +EA  L 
Sbjct: 115 NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 174

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   G Q + VTFN ++  L  + K  EA  L+D M+  G +PD      +V YG ++
Sbjct: 175 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPD------LVTYGVVV 228

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G    A  L   + +  L P V+ Y   I  LC ++ MD A +LF +ME KG+ 
Sbjct: 229 NGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIR 288

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           PN V +++L+         S    LL  M +R + P     S ++D  VK
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT +++++G C    + +A  L  QM      PN VT+N+LIHG    N  +EA  
Sbjct: 148 EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVA 207

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ +G Q D+VT+ V+++ LCK    D A  LL+ M QG + P       ++ Y  
Sbjct: 208 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEP------GVLIYTT 261

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK   + +A  L + +   G+ PNVVTY+  I  LCN  +   A  L  DM  + 
Sbjct: 262 IIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + P+   F+ L+ +F+++ +  +  +L   M KR++ P    Y+S++
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 368



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 6/215 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A  LF +M      P+++ ++ L+      N  +    L  +M + G+  +  T+++
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSI 121

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C+  ++  A  +L  M++ G  P      NIV    L++G C   ++  A  L  
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEP------NIVTLSSLLNGYCHSKRISEAVALVD 175

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  PN VT+N  IH L    +  +A  L   M  KG  P+ V +  ++    ++ 
Sbjct: 176 QMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +T     LL  M++  + P   I + I+D L KN+
Sbjct: 236 DTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNK 270



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YNT+I G C++G  ++A  LF +MK++   PN   YN+LI       D   +  
Sbjct: 533 KPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAE 592

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM   G   D  T  ++ + L   R
Sbjct: 593 LIKEMRSCGFAGDASTIGLVTNMLHDGR 620


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 17/232 (7%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +T+NT+IDG C    +D   EL  +M +  +  +  TYN+LIHGF    D N A 
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAAL 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-----------GVRPD 120
            L  EM+  GL  D+VT + ++D LC N K+ +A  +  +M +            GV PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +  Y  LI GL   GK   A EL + +   G++P+ +TY+  I  LC   ++D+
Sbjct: 511 ------VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           A  +F  M  K  +PN V FTTL+  + +       +EL   M +R ++  A
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616



 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y+ IID LCK+G    A+ LF +M+++ I P++ TYNS+I GFC +   ++AE L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++R +  DVVT+N +++   K  K  EA  L D M+  G+ P      N + Y  +
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP------NTITYSSM 366

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +L  A  +   +   G  PN++T+N  I   C  +++D   +L  +M   G+
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             +   + TL+  F    + +  ++LL+ M    + P       ++D L  N
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 123/252 (48%), Gaps = 29/252 (11%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG + K    P+ VT+ T++ GLC E  V +A + F QM +    PNVVT+ +L++G C 
Sbjct: 137 FGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN----------RKMDEATRLLDLMI 113
                EA  L   MM+ GLQ   +T+  I+D +CK           RKM+E + ++    
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIP--- 253

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
                       N+V Y  +ID LCK G+  +A+ L   +   G+ P++ TYN  I   C
Sbjct: 254 ------------NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           +  +   A  L  +M  + ++P+ V +  L+ +F+++ +  +  EL   M  R ++P   
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 234 ILSIIVDLLVKN 245
             S ++D   K 
Sbjct: 362 TYSSMIDGFCKQ 373



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++N +I   C    +  A   F ++    ++P+VVT+ +L+HG C  +  +EA   F +M
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +   + +VVTF  +M+ LC+  ++ EA  LLD M++ G++P        + YG ++DG+
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ------ITYGTIVDGM 229

Query: 138 CKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           CK G   +A  L + +   + ++PNVV Y+  I +LC D +   A +LF +M+ KG+ P+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + +++  F      S   +LL+ M +R + P     + +++  VK
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 17/221 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----------NINPNVVTYNSLIHGFC 62
           P+ VT +T++DGLC  G +  A E+F  M+              + P+V TYN LI G  
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 EAE L+ EM  RG+  D +T++ ++D LCK  ++DEAT++ D M      P   
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP--- 579

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V +  LI+G CK G++ +  EL   + R G++ N +TY   I        ++ A 
Sbjct: 580 ---NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGAL 636

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           D+F +M   GV P+ +    ++     K E  + + +L  +
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +I GL  EG   +A+EL+ +M    I P+ +TY+S+I G C  +  +EA  
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +    +VVTF  +++  CK  ++D+   L   M + G+  +A      + Y  
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA------ITYIT 621

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           LI G  K+G +  A ++ Q +  +G+ P+ +T    +  L + E++ +A
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 670



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L  GF       +A  LF +M+       VV F  +M  + +  + D    L   M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +R D      I ++  LI   C   KL  A      +T+ GL P+VVT+   +H LC ++
Sbjct: 110 IRCD------IYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVED 163

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++ +A D F  M      PN V FTTLM    R+    + + LL  M +  + P      
Sbjct: 164 RVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223

Query: 237 IIVDLLVKNEISLNSI 252
            IVD + K   +++++
Sbjct: 224 TIVDGMCKKGDTVSAL 239


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 7/232 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDG 67
           G  C+P+ VTYNT+I G CK   ++KA E+F  +K  ++ +P+VVTY S+I G+C A   
Sbjct: 234 GFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKM 293

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA  L  +M+  G+    VTFNV++D   K  +M  A  +   MI  G  PD      +
Sbjct: 294 REASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD------V 347

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V +  LIDG C++G++     L + +   G+ PN  TY+I I+ALCN+ ++ KA +L   
Sbjct: 348 VTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQ 407

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +  K + P   ++  ++  F +  + ++   ++  M+K+   P     +I++
Sbjct: 408 LASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 6/236 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G VC P+ VTY ++I G CK G + +A  L   M    I P  VT+N L+ G+  A +  
Sbjct: 270 GSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEML 329

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            AE +  +M+  G   DVVTF  ++D  C+  ++ +  RL + M   G+ P+AF      
Sbjct: 330 TAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAF------ 383

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI+ LC   +L  AREL   L    ++P    YN  I   C   ++++A+ +  +M
Sbjct: 384 TYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEM 443

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           E K   P+ + FT L+     K    + + +   M      P    +S ++  L+K
Sbjct: 444 EKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLK 499



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELF-LQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           N++++ L K   V+ A +LF   ++ ++ N +  T+N LI G C      +A  L   M 
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMS 233

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G + D+VT+N ++   CK+ ++++A+ +   +  G V     C  ++V Y  +I G C
Sbjct: 234 GFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSV-----CSPDVVTYTSMISGYC 288

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GK++ A  L   + R G+ P  VT+N+ +       +M  A ++   M   G  P+ V
Sbjct: 289 KAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVV 348

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            FT+L+  + R  + S+   L   M+ R + P A   SI+++ L
Sbjct: 349 TFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINAL 392



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VT+N ++DG  K G +  A+E+  +M      P+VVT+ SLI G+C     ++   L
Sbjct: 310 PTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRL 369

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM  RG+  +  T++++++ LC   ++ +A  LL  +    + P  F       Y  +
Sbjct: 370 WEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPF------MYNPV 423

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK GK+  A  + + + +    P+ +T+ I I   C   +M +A  +F  M   G 
Sbjct: 424 IDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGC 483

Query: 194 APNCVIFTTLMPSFIRKN---ETSKVIELLRSMDKRNVMP 230
           +P+ +  ++L+   ++     E   + ++ R     NV+P
Sbjct: 484 SPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVP 523



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY+ +I+ LC E  + KA+EL  Q+  ++I P    YN +I GFC A   NEA  +
Sbjct: 380 PNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVI 439

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +  + D +TF +++   C   +M EA  +   M+  G  PD       +    L
Sbjct: 440 VEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDK------ITVSSL 493

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVV-----TYNITIHA 171
           +  L K G  K A  L+Q + R G   NVV     T N T+ A
Sbjct: 494 LSCLLKAGMAKEAYHLNQ-IARKGQSNNVVPLETKTANATLAA 535



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 28/227 (12%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           NI  +  TYN L    C A   + A  +F  M   G+  +      ++    +  K+  A
Sbjct: 98  NIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFA 157

Query: 106 T-----------------RLLDLMIQGGVRPDA---------FCEIN-IVAYGCLIDGLC 138
           T                  LL+ +++     DA         F   N    +  LI GLC
Sbjct: 158 TALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLC 217

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV-APNC 197
            +GK + A EL   ++  G  P++VTYN  I   C   +++KA ++F D++   V +P+ 
Sbjct: 218 GVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDV 277

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V +T+++  + +  +  +   LL  M +  + P     +++VD   K
Sbjct: 278 VTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAK 324



 Score = 37.7 bits (86), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ +T+  +I G C +G + +A  +F +M     +P+ +T +SL+     A    EA 
Sbjct: 448 CKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA- 506

Query: 72  YLFIEMMDRGLQSDVV 87
           Y   ++  +G  ++VV
Sbjct: 507 YHLNQIARKGQSNNVV 522


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 10/246 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NEAEY 72
           PN V YN I+DGLCK G V +A  L  +M   N+ PNVVTYN LI G C    G  E   
Sbjct: 213 PNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVG 272

Query: 73  LFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           LF EM+ ++G+  DV TF++++D  CK   +  A  ++  M++ GV P      N+V Y 
Sbjct: 273 LFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEP------NVVTYN 326

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG--LMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            LI G C   +++ A  +   + R G   +P+VVT+N  IH  C  +++DKA  L  +M 
Sbjct: 327 SLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMV 386

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
            KG+ P+   +T+L+  F    +     EL  +M +   +P     ++++D L+K  +  
Sbjct: 387 GKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDS 446

Query: 250 NSIPQF 255
            ++  F
Sbjct: 447 EAVTLF 452



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 14/262 (5%)

Query: 1   MANGNREFGVV------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY 54
           M    R FG++      C P+ VT+N++I G CK   VDKA  L  +M  + ++P+V T+
Sbjct: 338 MEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTW 397

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            SLI GFC       A  LF  M + G   ++ T  V++D L K     EA  L   M++
Sbjct: 398 TSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMK 457

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            G+      +++IV Y  ++DG+CK+GKL +AR+L   +   GL  +  TYNI I  LC 
Sbjct: 458 SGL------DLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCR 511

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
           +  +D A +L   M+  G  PN   +   +   +RK + ++  + L+ M  +     A+ 
Sbjct: 512 EGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGFPVDATT 571

Query: 235 LSIIVDLLVKNE--ISLNSIPQ 254
             +++  L  NE   S    PQ
Sbjct: 572 AELLIRFLSANEEDKSFKEFPQ 593



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 118/251 (47%), Gaps = 33/251 (13%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT NTI++GLC EG V+ A  L  +M++   + N  TY +L++G C   D + A  
Sbjct: 142 EPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALE 201

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM---------------IQG-- 115
              +M+ R L  +VV +N I+D LCK   + EA  LL  M               IQG  
Sbjct: 202 CLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLC 261

Query: 116 ----------GVRPDAFCEINIV----AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
                     G+  +   E  IV     +  L+DG CK G L  A  +   + R G+ PN
Sbjct: 262 GEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPN 321

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDM--EVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           VVTYN  I   C   QM++A  +F  M  E +G  P+ V   +L+  + +  E  K + L
Sbjct: 322 VVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSL 381

Query: 220 LRSMDKRNVMP 230
           L  M  + + P
Sbjct: 382 LSEMVGKGLDP 392



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 123/275 (44%), Gaps = 45/275 (16%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  P+  T++ ++DG CKEG + +A+ +   M    + PNVVTYNSLI G+C  + 
Sbjct: 280 EKGIV--PDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQ 337

Query: 67  GNEAEYLFIEMM--DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
             EA  +F  M+    G    VVT N ++   CK +++D+A  LL  M+  G+ PD F  
Sbjct: 338 MEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVF-- 395

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN----------------------- 161
                +  LI G C++ K   AREL  ++   G +PN                       
Sbjct: 396 ----TWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTL 451

Query: 162 ------------VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
                       +V YNI +  +C   +++ A  L   + VKG+  +   +  ++    R
Sbjct: 452 FRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCR 511

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +       ELLR M +    P     ++ V  L++
Sbjct: 512 EGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLR 546



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 12/225 (5%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T N  I+ LC          +   M    + P +VT N++++G C   D N A +L  +M
Sbjct: 112 TLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKM 171

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            + G   +  T+  +++ LCK      A   L  M++  + P      N+V Y  ++DGL
Sbjct: 172 ENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGP------NVVVYNAILDGL 225

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND-EQMDKAHDLFLDMEV-KGVAP 195
           CK G +  A  L   +    + PNVVTYN  I  LC +     +   LF +M   KG+ P
Sbjct: 226 CKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVP 285

Query: 196 NCVIFTTLMPSFIRKN----ETSKVIELLRSMDKRNVMPYASILS 236
           +   F+ L+  F ++       S V  ++R   + NV+ Y S+++
Sbjct: 286 DVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIA 330



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 6/148 (4%)

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142
            +DV T N+ ++ LC  RK      +L LM + G+ P       +V    +++GLC  G 
Sbjct: 107 SADVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEP------TLVTLNTIVNGLCIEGD 160

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           + +A  L + +   G   N  TY   ++ LC       A +    M  + + PN V++  
Sbjct: 161 VNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNA 220

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++    ++    + + LL  M   NV P
Sbjct: 221 ILDGLCKRGLVGEALGLLHEMGVVNVEP 248



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 5/156 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           FN++   + K++    A  L+ ++   G      C +NI      I+ LC + K      
Sbjct: 77  FNLLFGLVAKSQHYATAISLIKILHSLGDGSADVCTLNIA-----INCLCHMRKTTLGFA 131

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           +   +T+ GL P +VT N  ++ LC +  ++ A  L   ME  G   N   +  L+    
Sbjct: 132 VLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLC 191

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  +TS  +E L+ M KRN+ P   + + I+D L K
Sbjct: 192 KIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCK 227


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 5/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY+T+I+GLCK+G VD A ELF  M+  N  PNVVT+N LI G C A    EA 
Sbjct: 250 CSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEAR 309

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+  M + G   D++T+N ++D LCK+ ++DEA +L   + + GV        N V Y 
Sbjct: 310 QLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSA-----ANAVTYS 364

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L  G   +G++ +A  +   L   G  P++ TY   I   C   +  +  +L  +M  K
Sbjct: 365 TLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASK 424

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P     + ++      N T + I+L  SM  R     A I +++V+ + +
Sbjct: 425 GFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMAR 477



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 12/231 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N +I+G CK   +D A +L   M ++   PNV T+  LI G C AN   EA+ L
Sbjct: 182 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 241

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G   +VVT++ +++ LCK  ++D+A  L  LM +    P      N+V +  L
Sbjct: 242 LEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPP------NVVTHNIL 295

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  +++ AR+L   +   G  P+++TYN  I  LC   Q+D+A  LF  +   GV
Sbjct: 296 IDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 355

Query: 194 -APNCVIFTTLMPSFI---RKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            A N V ++TL   +    R  +  ++  +L  +DK      A+  S+I++
Sbjct: 356 SAANAVTYSTLFHGYAALGRMADACRIFSML--VDKGFSPDLATYTSLILE 404



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 132/246 (53%), Gaps = 7/246 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+  +I GLCK   V +A++L  +M     +PNVVTY+++I+G C     ++A 
Sbjct: 215 CVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAY 274

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M  R    +VVT N+++D LCK ++++EA +L   M + G  PD      I+ Y 
Sbjct: 275 ELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD------IITYN 328

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            LIDGLCK  ++  A +L Q++  +G+   N VTY+   H      +M  A  +F  +  
Sbjct: 329 SLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVD 388

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
           KG +P+   +T+L+  + + +   +V+EL+  M  +   P  + LS ++  L +   +  
Sbjct: 389 KGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTER 448

Query: 251 SIPQFN 256
           +I  F+
Sbjct: 449 AIQLFD 454



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 31/260 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V + T++ GLC  G V +A E F  M  ++  P+V+TY +L+H  C A   +EA+ + 
Sbjct: 43  NAVVHTTLMKGLCDAGRVVEALEHFRAMA-KDCAPDVMTYTALVHALCKAGKFDEAQGML 101

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV-RPDAFCEI-------- 125
            EM+ RG   D VTF+ ++D LCK    ++A R+L+ +IQ G+   DA  E         
Sbjct: 102 REMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNK 161

Query: 126 ---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                 ++ +  +I+G CK   L +A +L + +   G +PNV T
Sbjct: 162 YNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFT 221

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           + I I  LC   ++ +A  L   M   G +PN V ++T++    ++ +     EL + M+
Sbjct: 222 FTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLME 281

Query: 225 KRNVMPYASILSIIVDLLVK 244
           +RN  P     +I++D L K
Sbjct: 282 RRNCPPNVVTHNILIDGLCK 301



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 95/188 (50%), Gaps = 9/188 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM---KDENINPNVVTYNSLIHGFCYANDGN 68
           C  + + YN +++G+ +    +KA  +  Q+   +D   NP+    ++L+   C     +
Sbjct: 461 CTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTD 520

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A+ L  +M +RG  + V ++N ++  L + ++ DEAT++ + M+  G  P+    +N+V
Sbjct: 521 DAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPE-ISTVNVV 579

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
                I  LC   K+ +A EL Q +++ G  P++ T N  I   C   + D A  L  +M
Sbjct: 580 -----ISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEM 634

Query: 189 EVKGVAPN 196
              G+ PN
Sbjct: 635 TEAGLEPN 642



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 115/294 (39%), Gaps = 72/294 (24%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP-NVVTYNSLIHGFCYA 64
           RE G  C P+ +TYN++IDGLCK   VD+A +LF  + +  ++  N VTY++L HG+   
Sbjct: 316 RETG--CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAAL 373

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM---------------------- 102
               +A  +F  ++D+G   D+ T+  ++ E CK  +                       
Sbjct: 374 GRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTL 433

Query: 103 -------------DEATRLLDLMIQGGVRPDAFCEINIVAYG------------------ 131
                        + A +L D M   G   DA    N+V  G                  
Sbjct: 434 SAVLGGLFEGNHTERAIQLFDSMAARGCTDDALI-YNLVVEGMARASKHNKALAVLEQVI 492

Query: 132 ---------------CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
                           L++ LC++G+  +A++L   ++  G    V +YN  +  L   +
Sbjct: 493 DKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQ 552

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + D+A  +F  M   G AP       ++       +     EL++ M K    P
Sbjct: 553 RWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCP 606



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 6/154 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++   + +++ LC+ G  D AK+L  +M +      V +YN L+ G       +EA  +
Sbjct: 501 PSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQV 560

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+  G   ++ T NV++  LC   K+D+A  L+  M + G  PD      I     L
Sbjct: 561 FEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPD------IETCNTL 614

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           I G CK G+   AR+L + +T AGL PN  T+++
Sbjct: 615 IGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDL 648



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   T N +I  LC    VD A EL  +M      P++ T N+LI G+C +   + A  L
Sbjct: 571 PEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKL 630

Query: 74  FIEMMDRGLQSDVVTFNVI 92
             EM + GL+ +  T +++
Sbjct: 631 LEEMTEAGLEPNDTTHDLL 649



 Score = 40.4 bits (93), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL 57
           C P+  T NT+I G CK G  D A++L  +M +  + PN  T++ L
Sbjct: 604 CCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V YNTIID +CK+   + A +L+ +M  + I P+V TYN+LI+GFC      
Sbjct: 234 GKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLK 293

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M    +  DV TFN+++D  CK  ++ EA   L +M++ G++PD      +V
Sbjct: 294 DAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPD------VV 347

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+D  C + ++  A+ +  +++  G+  NV +Y+I I+  C  + +D+A  LF +M
Sbjct: 348 TYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEM 407

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             K + PN + +++L+    +    S  +EL   M  R   P
Sbjct: 408 HHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQP 449



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 22/249 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N ++D  CKEG V +AK     M  + I P+VVTYNSL+  +C  N+ N+A+ +
Sbjct: 309 PDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSI 368

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  RG+ ++V +++++++  CK + +D+A +L   M    + P      N++ Y  L
Sbjct: 369 FNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFP------NVITYSSL 422

Query: 134 IDGLCKIGKLKNARELSQ------------SLTRA----GLMPNVVTYNITIHALCNDEQ 177
           IDGLCK G++  A EL+             +LTR     G+ PN+ TY I I  LC   +
Sbjct: 423 IDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGR 482

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           ++ A ++F D+ VKG       +T ++  F  K    + + LL  M     +P A    I
Sbjct: 483 LEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEI 542

Query: 238 IVDLLVKNE 246
           I+  L  N+
Sbjct: 543 IIRSLFDND 551



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 10/214 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYN+++D  C    V+KAK +F  M    +  NV +Y+ +I+ FC     ++A  
Sbjct: 343 KPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMK 402

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC--------- 123
           LF EM  + +  +V+T++ ++D LCK+ ++  A  L D M   G +PD            
Sbjct: 403 LFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQG 462

Query: 124 -EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+  Y  LIDGLCK G+L++AR + + L   G    V TY + IH  CN    D+A 
Sbjct: 463 IRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAM 522

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
            L   M+     PN V +  ++ S    +E  K 
Sbjct: 523 TLLSKMKDNCCIPNAVTYEIIIRSLFDNDENDKA 556



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 100/199 (50%), Gaps = 6/199 (3%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           + PN+V YN++I   C     N+A  L+ EM+ + +  DV T+N +++  C   K+ +A 
Sbjct: 237 LQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAI 296

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
            L + M    + PD +       +  L+D  CK G++K A+     + + G+ P+VVTYN
Sbjct: 297 GLFNKMTSENINPDVY------TFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYN 350

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             +   C   +++KA  +F  M  +GV  N   ++ ++  F +     + ++L + M  +
Sbjct: 351 SLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHK 410

Query: 227 NVMPYASILSIIVDLLVKN 245
            + P     S ++D L K+
Sbjct: 411 QIFPNVITYSSLIDGLCKS 429



 Score = 43.5 bits (101), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           TY  +I G C +G  D+A  L  +MKD    PN VTY  +I      ++ ++AE  F++
Sbjct: 504 TYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRSLFDNDENDKAENFFVK 562


>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 257

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN +ID  C  G    A +L   M ++ INP++VT+++LI+ F      +EAE +
Sbjct: 43  PNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEI 102

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+   +    +T+N ++D  CK  ++D+A R+LD M   G  PD      +V +  L
Sbjct: 103 YKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPD------VVTFSTL 156

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK  ++ N  E+   + R G++ N VTY   IH  C    +D A DL  +M   GV
Sbjct: 157 INGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGV 216

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           AP+ + F  ++     K E  K   +L  + K
Sbjct: 217 APDYITFHCMLAGLCSKKELRKAFAILEDLQK 248



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 127/236 (53%), Gaps = 7/236 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V    I+D LCK+G    A+ LF +M ++ I PNV+TYN +I  FC++   ++A+ 
Sbjct: 7   KADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQ 66

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+++ +  D+VTF+ +++   K RK+ EA  +   M++  + P        + Y  
Sbjct: 67  LLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFP------TTITYNS 120

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK  ++ +A+ +  S+   G  P+VVT++  I+  C  +++D   ++F +M  +G
Sbjct: 121 MIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 180

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEI 247
           +  N V +TTL+  F +  +     +LL  M    V P Y +   ++  L  K E+
Sbjct: 181 IVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKEL 236



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 83/143 (58%), Gaps = 6/143 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T+TYN++IDG CK+  VD AK +   M  +  +P+VVT+++LI+G+C A   +    +
Sbjct: 113 PTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEI 172

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RG+ ++ VT+  ++   C+   +D A  LL+ MI  GV PD       + + C+
Sbjct: 173 FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPD------YITFHCM 226

Query: 134 IDGLCKIGKLKNARELSQSLTRA 156
           + GLC   +L+ A  + + L ++
Sbjct: 227 LAGLCSKKELRKAFAILEDLQKS 249



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 10/191 (5%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNE--AEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99
           M   +I  +VV   +++   C   DGN   A+ LF EM ++G+  +V+T+N ++D  C +
Sbjct: 1   MGQSHIKADVVISTAIVDRLC--KDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHS 58

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
            +  +A +LL  MI+  + PD      IV +  LI+   K  K+  A E+ + + R  + 
Sbjct: 59  GRWSDADQLLRHMIEKQINPD------IVTFSALINAFVKERKVSEAEEIYKEMLRWSIF 112

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P  +TYN  I   C  +++D A  +   M  KG +P+ V F+TL+  + +       +E+
Sbjct: 113 PTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEI 172

Query: 220 LRSMDKRNVMP 230
              M +R ++ 
Sbjct: 173 FCEMHRRGIVA 183



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 60/99 (60%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT++T+I+G CK   VD   E+F +M    I  N VTY +LIHGFC   D + A+
Sbjct: 146 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 205

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
            L  EM+  G+  D +TF+ ++  LC  +++ +A  +L+
Sbjct: 206 DLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILE 244


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 127/245 (51%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TY+T+IDGLCK+  +  A  LF  +    I  +VV YNSLIHG C      EA  
Sbjct: 192 RPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATR 251

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+   +  D  TFN+++D LCK  ++ EA  +  +M++ G +PD      IV Y  
Sbjct: 252 LLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPD------IVTYNA 305

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G C    +  AREL   + + GL P+V+ YN+ I+  C  + +D+A  LF ++  K 
Sbjct: 306 LMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKN 365

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + PN   + +L+    +    S V EL+  M  R   P     +I +D   K++    +I
Sbjct: 366 LVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAI 425

Query: 253 PQFNR 257
             F +
Sbjct: 426 SLFRQ 430



 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 120/217 (55%), Gaps = 7/217 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ + YN +I+G CK   VD+A  LF +++ +N+ PN+ TYNSLI G C     +  + 
Sbjct: 332 EPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQE 391

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM DRG   D+VT+N+ +D  CK++  ++A  L   ++Q G+ PD +       Y  
Sbjct: 392 LVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFY------MYDV 444

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++  CK  KLK A E  Q L   G  PNV TY I I+ALC D   D+A  L   M+   
Sbjct: 445 IVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDND 504

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P+ V F T++ +   +NET K  +L   M +R ++
Sbjct: 505 CPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLV 541



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT+NT+I+G C  G V KA    L +  +    +  +Y SLI+G C      +A  
Sbjct: 122 QPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQ 181

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M +  ++ +++T++ ++D LCK+R + +A RL  L+   G+       +++VAY  
Sbjct: 182 LLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGIL------VDVVAYNS 235

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C +G+ + A  L   + R  + P+  T+NI + ALC + ++ +A  +F  M  +G
Sbjct: 236 LIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRG 295

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             P+ V +  LM  F   N  S+  EL   M KR + P
Sbjct: 296 EKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEP 333



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 124/263 (47%), Gaps = 40/263 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N ++D LCKEG + +A+ +F  M      P++VTYN+L+ GFC +N+ +EA  L
Sbjct: 263 PDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEAREL 322

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ RGL+ DV+ +NV+++  CK   +DEA  L   +    + P      N+  Y  L
Sbjct: 323 FNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVP------NLATYNSL 376

Query: 134 IDGLCKIGKLKNAREL-------------------------------SQSLTRA---GLM 159
           IDGLCK+G++   +EL                               + SL R    G+ 
Sbjct: 377 IDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIW 436

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+   Y++ +   C  E++  A +    + + G  PN   +T ++ +  +     + + L
Sbjct: 437 PDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTL 496

Query: 220 LRSMDKRNVMPYASILSIIVDLL 242
           L  MD  +  P A     I+  L
Sbjct: 497 LSKMDDNDCPPDAVTFETIIGAL 519



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 8/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    ++ ++  + + G    A  LF Q+  + I P++ T   LI+ +C+    + A  L
Sbjct: 53  PPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSL 112

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL-LDLMIQGGVRPDAFCEINIVAYGC 132
              ++  G Q ++VTFN +++  C N  + +A    LDLM +G         ++  +YG 
Sbjct: 113 LGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGY-------PLDEFSYGS 165

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK G+ ++A +L Q +    + PN++TY+  I  LC D  +  A  LF  +  +G
Sbjct: 166 LINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRG 225

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V + +L+       +  +   LL  M + N+ P     +I+VD L K
Sbjct: 226 ILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCK 277



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 6/183 (3%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +     +  F+ ++  + +      A  L   +   G+ P      +I     L
Sbjct: 43  FNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITP------SIATLTIL 96

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  C    L  A  L  ++ + G  PN+VT+N  I+  C +  + KA    LD+  KG 
Sbjct: 97  INCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGY 156

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
             +   + +L+    +  +T   ++LL+ M++  V P     S ++D L K+ +  +++ 
Sbjct: 157 PLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALR 216

Query: 254 QFN 256
            F+
Sbjct: 217 LFS 219



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY  +I+ LCK+   D+A  L  +M D +  P+ VT+ ++I      N+ ++AE
Sbjct: 470 CCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAE 529

Query: 72  YLFIEMMDRGLQSD 85
            L +EM++RGL +D
Sbjct: 530 KLRLEMIERGLVND 543



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y+ I++  CK   +  A+E    +      PNV TY  +I+  C     +EA  L
Sbjct: 437 PDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTL 496

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             +M D     D VTF  I+  L +  + D+A +L   MI+ G+  D
Sbjct: 497 LSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLVND 543


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 8/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+N +I  LC+ G V+ A E+  Q+      PN ++YN L+H FC     ++A 
Sbjct: 82  CPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKA- 140

Query: 72  YLFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             F+E+M  RG   D+V++N ++  LC+N ++D A  LL  +   G  P       +++Y
Sbjct: 141 MAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSP------VLISY 194

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGL K GK K A EL   +   GL P+++TY      LC ++++++A   F  ++ 
Sbjct: 195 NTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQD 254

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
            G+ P  V++  ++    ++ ET   I+L   M     MP  S  +I+V+ L 
Sbjct: 255 MGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLA 307



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 6/182 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT++  LC+ G VD A +L  Q+K +  +P +++YN++I G   A    EA 
Sbjct: 152 CYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEAL 211

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +GLQ D++T+  I   LC+  K++EA R    +   G+RP       +V Y 
Sbjct: 212 ELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRP------TVVLYN 265

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLCK  +  NA +L   +   G MPN  TY I +  L  +  + +A DL   +  +
Sbjct: 266 AILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQLCSR 325

Query: 192 GV 193
           GV
Sbjct: 326 GV 327



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 106/208 (50%), Gaps = 6/208 (2%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           +L  +M+D+   P+++TYN +++G C     ++A      +   G + + V++N+++  L
Sbjct: 2   KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGL 61

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
               + ++A +L++ M   G  P      N+V +  LI  LC+ G ++ A E+ + + + 
Sbjct: 62  FTAERWEDAEKLMEEMAHKGCPP------NVVTFNMLISFLCRRGLVEPAMEVLEQIPKY 115

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  PN ++YN  +HA C  ++MDKA      M  +G  P+ V + TL+ +  R  E    
Sbjct: 116 GCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVA 175

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
           I+LL  +  +   P     + ++D L K
Sbjct: 176 IDLLHQLKGKGCSPVLISYNTVIDGLTK 203



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 6/151 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P  ++YNT+IDGL K G   +A EL  +M  + + P+++TY ++  G C  +   
Sbjct: 184 GKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIE 243

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA   F ++ D G++  VV +N I+  LCK R+   A  L   MI  G  P      N  
Sbjct: 244 EAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMP------NES 297

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
            Y  L++GL   G +K AR+L   L   G++
Sbjct: 298 TYTILVEGLAYEGLVKEARDLLGQLCSRGVV 328


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ VTYNT+++GLCKE  +  A+ L  +M++  + P++ T+ +LIHG+C     +
Sbjct: 359 GCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLD 418

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF  M+++ L+ D+VT+N ++D +C+   +D+A  L D M    + P      N V
Sbjct: 419 KALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP------NHV 472

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LID  C+ G++++A      +   G++PN++TYN  I   C    + K       M
Sbjct: 473 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 532

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V  V+P+ + + TL+  +I++++     +LL  M+K  V P
Sbjct: 533 MVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQP 574



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  VTYN+++ GLC+ G  DKA E+F +M D  + P+V ++  LI GFC   +  EA  
Sbjct: 223 KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 282

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ EM  RG++ D+V+F+ ++    +  KMD A   L  M   G+ PD       V Y  
Sbjct: 283 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG------VIYTM 336

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C+ G + +A  +   +   G +P+VVTYN  ++ LC + ++  A  L  +M  +G
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P+   FTTL+  +  + +  K ++L  +M  + + P     + ++D + + 
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 449



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 16/229 (6%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN----PNVVTYNSLIHGF 61
           R FG+V  P+ V Y  +I G C+ G +  A    L+++DE +     P+VVTYN+L++G 
Sbjct: 323 RCFGLV--PDGVIYTMVIGGFCRAGLMSDA----LRVRDEMVGCGCLPDVVTYNTLLNGL 376

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           C      +AE L  EM +RG+  D+ TF  ++   C   K+D+A +L D M+   +RPD 
Sbjct: 377 CKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD- 435

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                IV Y  LIDG+C+ G L  A +L   +    + PN VTY+I I + C   Q++ A
Sbjct: 436 -----IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 490

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
                +M  KG+ PN + + +++  + R    SK  + L+ M    V P
Sbjct: 491 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSP 539



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  RE GV   P+  T+ T+I G C EG +DKA +LF  M ++ + P++VTYN+LI G
Sbjct: 388 LLNEMRERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 445

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C   D ++A  L+ +M  R +  + VT+++++D  C+  ++++A   LD MI  G+ P 
Sbjct: 446 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP- 504

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                NI+ Y  +I G C+ G +   ++  Q +    + P+++TYN  IH    +++M  
Sbjct: 505 -----NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHD 559

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  L   ME + V P+ V +  L+  F       +   +   M  + + P
Sbjct: 560 AFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEP 609



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYNT+IDG+C++G +DKA +L+  M    I PN VTY+ LI   C      +A  
Sbjct: 433 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 492

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM+++G+  +++T+N I+   C++  + +  + L  M+   V PD      ++ Y  
Sbjct: 493 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD------LITYNT 546

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K  K+ +A +L   + +  + P+VVTYN+ I+       + +A  +F  M  KG
Sbjct: 547 LIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKG 606

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + +++   +    + +  +L   M +R   P
Sbjct: 607 IEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAP 644



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 115/237 (48%), Gaps = 6/237 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NT T N ++   CK    DK   +  +M+   + P+VVT+N ++     A D   A  L 
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 214

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+ +GL+  +VT+N ++  LC++   D+A  +   M   GV PD      + ++  LI
Sbjct: 215 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPD------VRSFTILI 268

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C++G+++ A ++ + +   G+ P++V+++  I       +MD A     +M   G+ 
Sbjct: 269 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 328

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           P+ VI+T ++  F R    S  + +   M     +P     + +++ L K    L++
Sbjct: 329 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 385



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 99/183 (54%), Gaps = 6/183 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +ID  C++G V+ A     +M ++ I PN++TYNS+I G+C + + ++ +  
Sbjct: 469 PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 528

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM   +  D++T+N ++    K  KM +A +LL++M +  V+PD      +V Y  L
Sbjct: 529 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPD------VVTYNML 582

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G    G ++ A  + + +   G+ P+  TY   I+         +A  L  +M  +G 
Sbjct: 583 INGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGF 642

Query: 194 APN 196
           AP+
Sbjct: 643 APD 645



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 107/212 (50%), Gaps = 6/212 (2%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           + G+   A + +  +   N   N  T N ++H +C A + ++ + +  EM  R +  DVV
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 192

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           T NV++D   +    + A  L+D M+  G++P       IV Y  ++ GLC+ G    A 
Sbjct: 193 THNVMVDARFRAGDAEAAMALVDSMVSKGLKP------GIVTYNSVLKGLCRSGMWDKAW 246

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           E+ + +   G+ P+V ++ I I   C   ++++A  ++ +M  +G+ P+ V F+ L+  F
Sbjct: 247 EVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLF 306

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            R+ +    +  LR M    ++P   I ++++
Sbjct: 307 ARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 338



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142
           + +  T N+++   CK  + D+   ++  M +  V PD      +V +  ++D   + G 
Sbjct: 153 EVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPD------VVTHNVMVDARFRAGD 206

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
            + A  L  S+   GL P +VTYN  +  LC     DKA ++F +M+  GVAP+   FT 
Sbjct: 207 AEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTI 266

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           L+  F R  E  + +++ + M  R + P     S ++ L  +
Sbjct: 267 LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 308



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN +I+G    G V +A  +F +M  + I P+  TY S+I+G   A +  EA  
Sbjct: 573 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 632

Query: 73  LFIEMMDRGLQSD 85
           L  EM+ RG   D
Sbjct: 633 LHDEMLQRGFAPD 645


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN II+GLCKEG VD A  +   M  +   P+VVTY++L+ G C     +EA  
Sbjct: 336 EPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVD 395

Query: 73  LFIEMMDR--GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           L   +M +   ++ DV  FN+++ ELCK R++  A R+   M++ G         NIV Y
Sbjct: 396 LLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPS------NIVTY 449

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDG    GKL  A EL +    +G+ PN  TY + I+ LC  + +  A  LF     
Sbjct: 450 NILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRA 509

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G  P    + TLM S  R++   +   L + M   N  P     +II+D  +K
Sbjct: 510 SGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLK 563



 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 120/212 (56%), Gaps = 6/212 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  CKPN+VT++ +IDG CK G V++   L  +M+   +  +V  Y++LI GFC   D  
Sbjct: 192 GGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIE 251

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
             + LF EM+ + +  +VVT++ +M+ LCK +K  EA ++LD M    VRPD      +V
Sbjct: 252 RGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPD------VV 305

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           AY  L DGL K G+  +A ++   + + G  PN VTYN  I+ LC + ++D A  +   M
Sbjct: 306 AYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETM 365

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
             KG  P+ V ++TL+       +  + ++LL
Sbjct: 366 AKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLL 397



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   +N ++ G C+ G   KA +LF  MK   + P+ V+YN++I+G C      EA+ LF
Sbjct: 128 NVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELF 187

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM     + + VTF+ ++D  CKN  ++E   LL+ M + G+  D F       Y  LI
Sbjct: 188 KEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVF------VYSALI 241

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C  G ++  +EL   + R  + PNVVTY+  ++ALC  ++  +A  +   M    V 
Sbjct: 242 SGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVR 301

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+ V +T L     +    S  I++L  M KR   P     + I++ L K
Sbjct: 302 PDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCK 351



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 129/247 (52%), Gaps = 9/247 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTYN +IDG    G + KA EL+    D  I+PN  TY  LI+G C     + A+ LF
Sbjct: 445 NIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLF 504

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +    G +  V  +N +M  LC+   +++A  L   M      PD      +V++  +I
Sbjct: 505 NKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPD------VVSFNIII 558

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G +++A+EL   +    L+P+ +T++I I+      Q+D+A  L+  M   G  
Sbjct: 559 DGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHV 618

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL--VKNEISLNSI 252
           P+ V+F +L+  +  K +T KV+ +L+ M  ++V+  + + S I+  L  +  ++ +  I
Sbjct: 619 PDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEKI 678

Query: 253 -PQFNRQ 258
            P+F++ 
Sbjct: 679 LPKFSQH 685



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 13/230 (5%)

Query: 29  EGFVDKAKELF------LQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL 82
           E FV+  K  F      L MK    + NV  +N L+ GFC + D ++A  LF  M    L
Sbjct: 102 ESFVNTQKPSFAFGVLGLIMK-RGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCL 160

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142
             D V++N +++ LCK +++ EA  L   M  G  +P      N V +  LIDG CK G 
Sbjct: 161 IPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKP------NSVTFSALIDGFCKNGD 214

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           ++    L + + + GL  +V  Y+  I   C+   +++  +LF +M  K V PN V ++ 
Sbjct: 215 VEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSC 274

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           LM +  +K +  +  ++L +M    V P     +++ D L KN  + ++I
Sbjct: 275 LMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAI 324



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  + NT+ID L K    D    +  +M   ++ P   + ++LI  F      + A  +
Sbjct: 57  PSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGV 116

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +M RG   +V  FN+++   C++    +A  L  +M +  + PD       V+Y  +
Sbjct: 117 LGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDC------VSYNTV 170

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK  +L  A+EL + +      PN VT++  I   C +  +++   L  +ME  G+
Sbjct: 171 INGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGL 230

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +  +++ L+  F  K +  +  EL   M ++NV P     S +++ L K +
Sbjct: 231 EGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQ 283



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 6/170 (3%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N++     +P    YNT++  LC+E  V++A+ LF +M++ N +P+VV++N +I G   A
Sbjct: 505 NKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKA 564

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            D   A+ L +EM++  L  D +TF+++++   K  ++DEA  L + M+  G  PDA   
Sbjct: 565 GDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDA--- 621

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
              V +  L+ G    GK +    + Q +    ++ +    +  +  LCN
Sbjct: 622 ---VLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCN 668


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+I G CK   V++  E+F +M    +  N VTYN LI G   A D + A+
Sbjct: 392 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 451

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM+  G+  +++T+N ++D LCKN K+++A  + + + +  + P       I  Y 
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP------TIYTYN 505

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++  +L  +L+  G+ P+VV YN  I   C     ++A  LF +M+  
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  +     EL++ M        AS + ++ ++L
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  + YNTIIDGLCK   +D A  LF +M+ + I PNVVTY+SLI   C     ++A  
Sbjct: 253 EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 312

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  DV TF+ ++D   K  K+ EA +L D M++  + P      +IV Y  
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP------SIVTYSS 366

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+++ + +      P+VVTYN  I   C  +++++  ++F +M  +G
Sbjct: 367 LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 426

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V +  L+    +  +     E+ + M    V P     + ++D L KN
Sbjct: 427 LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           MA  +R     C+P+ VTY  +++GLCK G  D A  L  +M+   + P V+ YN++I G
Sbjct: 206 MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 265

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     ++A  LF EM  +G++ +VVT++ ++  LC   +  +A+RLL  MI+  + PD
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            F       +  LID   K GKL  A +L   + +  + P++VTY+  I+  C  +++D+
Sbjct: 326 VF------TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  +F  M  K   P+ V + TL+  F +     + +E+ R M +R ++      +I++ 
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439

Query: 241 LLVK 244
            L +
Sbjct: 440 GLFQ 443



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT +++++G C    + +A  L  QM      PN VT+N+LIHG    N  +EA  
Sbjct: 148 EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMA 207

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ +G Q D+VT+ V+++ LCK    D A  LL+ M QG + P       ++ Y  
Sbjct: 208 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEP------GVLIYNT 261

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK   + +A  L + +   G+ PNVVTY+  I  LCN  +   A  L  DM  + 
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + P+   F+ L+ +F+++ +  +  +L   M KR++ P    Y+S++
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 368



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TY+ +I+  C+   +  A  +  +M      PN+VT +SL++G+C++   +EA  L 
Sbjct: 115 NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 174

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   G Q + VTFN ++  L  + K  EA  L+D M+  G +PD      +V YG ++
Sbjct: 175 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPD------LVTYGVVV 228

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G    A  L   + +  L P V+ YN  I  LC  + MD A +LF +ME KG+ 
Sbjct: 229 NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIR 288

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           PN V +++L+         S    LL  M +R + P     S ++D  VK
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 6/177 (3%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           ++A  LF EM+       ++ F+ ++  + K  K D    L + M   G+  + +     
Sbjct: 63  DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHY----- 117

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  LI+  C+  +L  A  +   + + G  PN+VT +  ++  C+ +++ +A  L   
Sbjct: 118 -TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M V G  PN V F TL+      N+ S+ + L+  M  +   P      ++V+ L K
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 233



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YNT+I G C++G  ++A  LF +MK++   PN   YN+LI       D   +  
Sbjct: 533 KPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAE 592

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM   G   D  T  ++ + L   R
Sbjct: 593 LIKEMRSCGFAGDASTIGLVTNMLHDGR 620


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 125/234 (53%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY   IDG  K G ++ A   F +M    + PNV  Y +LI G C   +  EA  
Sbjct: 527 RPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFS 586

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  ++ R +  DV T++V++  L +N KM EA  +   + + G+ P+AF       Y  
Sbjct: 587 VFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF------TYNS 640

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK G +  A +L + +   G+ P++VTYNI I  LC   ++++A +LF D+E +G
Sbjct: 641 LISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRG 700

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + PNCV +  ++  + +    +   +LL  M  R V P A I ++I++   K E
Sbjct: 701 LTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEE 754



 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 129/233 (55%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN II GLC+   +D+A EL   M D+ + P++ TY+ LI+GFC      EA+
Sbjct: 246 CSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAK 305

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            + +EM+D GL+ + +T+N ++D   +   +++A R+ D M+  G+      E N++ + 
Sbjct: 306 LMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGI------EANLIIWN 359

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++G+CK GK++ A E+ Q +   G+ P+  TY++ I   C  + M +A +L  +M+ +
Sbjct: 360 TLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKR 419

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +AP  + ++ ++    R         +LR M    + P A + + ++    K
Sbjct: 420 KLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 472



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 128/255 (50%), Gaps = 28/255 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN++I G CK+G VDKA +L  +M  + INP++VTYN LI G C A +   A+ L
Sbjct: 633 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 692

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------CE 124
           F ++  RGL  + VT+  ++D  CK++    A +LL+ M+  GV PDAF         C+
Sbjct: 693 FDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCK 752

Query: 125 -------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                               + V++  LI+G CK GKL+ A  L + +     +PN VTY
Sbjct: 753 EEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTY 812

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
              I   C    M +A  L+L+M+ + V P    +T+L+  +      S+V  L   M  
Sbjct: 813 TSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVA 872

Query: 226 RNVMPYASILSIIVD 240
           + + P      +++D
Sbjct: 873 KGIEPDKMTYYVMID 887



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I   CK G V  AK + L+M ++  +PN+VTYN +I G C A   +EA  L
Sbjct: 213 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIEL 272

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+D+GL  D+ T++++++  C  ++  EA  +L  MI  G++P+       + Y  L
Sbjct: 273 KRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEP------ITYNAL 326

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  + G ++ A  +   +   G+  N++ +N  ++ +C   +M+KA ++  +M  KGV
Sbjct: 327 IDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGV 386

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   ++ L+    R    ++  ELL  M KR + P     S+I++ L +
Sbjct: 387 EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCR 437



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 124/232 (53%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y T++    KEG V++++ +  +M+++ I P+V  YNSLI GFC A    EA  
Sbjct: 457 KPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 516

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             +EM++R L+ +  T+   +D   K  +M+ A R  + M+  GV P      N+  Y  
Sbjct: 517 YLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLP------NVGIYTA 570

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK G +  A  + + +    ++ +V TY++ IH L  + +M +A  +F +++ KG
Sbjct: 571 LIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKG 630

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN   + +L+    ++    K  +LL  M  + + P     +I++D L K
Sbjct: 631 LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCK 682



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   Y  +I+G CKEG V +A  +F  +    +  +V TY+ LIHG       +EA  +
Sbjct: 563 PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGI 622

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E+ ++GL  +  T+N ++   CK   +D+A++LL+ M   G+ PD      IV Y  L
Sbjct: 623 FSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPD------IVTYNIL 676

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+++ A+ L   +   GL PN VTY   +   C  +    A  L  +M ++GV
Sbjct: 677 IDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGV 736

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            P+  I+  ++    ++ +  K ++L + M ++      S  ++I
Sbjct: 737 PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLI 781



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 28/234 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN +IDGLCK G +++AK LF  ++   + PN VTY +++ G+C + +   A  L
Sbjct: 668 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 727

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------DAFCEI 125
             EM+ RG+  D   +NVI++  CK  K ++A  L   M++ G           + +C+ 
Sbjct: 728 LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKS 787

Query: 126 --------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                               N V Y  LID  CK G +  A+ L   +    +MP   TY
Sbjct: 788 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 847

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
              +H   N   M +   LF +M  KG+ P+ + +  ++ ++ R+    +  +L
Sbjct: 848 TSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL 901



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++ TY+ +I+G C+   + +A EL  +MK   + P V+TY+ +I+G C   +      
Sbjct: 387 EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNA 446

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  GL+ + V +  +M    K  +++E+  +L+ M + G+ PD FC      Y  
Sbjct: 447 ILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFC------YNS 500

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  +++ AR     +    L PN  TY   I       +M+ A   F +M   G
Sbjct: 501 LIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCG 560

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PN  I+T L+    ++   ++   + R +  R V+      S+++  L +N
Sbjct: 561 VLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRN 613



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 6/183 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY ++ID  CK G + +AK L+L+M++ N+ P   TY SL+HG+    + +E   L
Sbjct: 807 PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 866

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G++ D +T+ V++D  C+   + EA +L D ++  G+       +++ AY  L
Sbjct: 867 FEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGM------PMSVAAYDAL 920

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LCK  +     +L   +  +G    + T ++          MD+A ++   M   G 
Sbjct: 921 IQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGW 980

Query: 194 APN 196
             N
Sbjct: 981 VSN 983



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 6/226 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TV++NT+I+G CK G + +A  L  +M ++   PN VTY SLI   C A    EA+ L+
Sbjct: 773 STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLW 832

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           +EM +R +     T+  ++        M E + L + M+  G+ PD       + Y  +I
Sbjct: 833 LEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDK------MTYYVMI 886

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D  C+ G +  A +L   +   G+  +V  Y+  I ALC  E+  +   L  ++   G  
Sbjct: 887 DAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFR 946

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
                 + +   F       +  E+LRSM K   +   + L  +VD
Sbjct: 947 LGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVD 992



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY  +ID  C+EG V +A +L  ++  + +  +V  Y++LI   C   +  E   
Sbjct: 876 EPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLK 935

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  E+ + G +  + T +VI         MDEA  +L  M++ G         N  + G 
Sbjct: 936 LLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVS------NTTSLGD 989

Query: 133 LIDG 136
           L+DG
Sbjct: 990 LVDG 993


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 133/263 (50%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYN +I+GLCK   V KA++L ++M+   ++P+V T+N+LI  +  A    +   
Sbjct: 401 RPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFT 460

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +  +M  +G++SDV++F  ++   CKN K+ EA  +LD MI   V P         DA+ 
Sbjct: 461 VLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI 520

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           E                     +IV Y  L+ GLC+  ++  A EL  +L   GL P+VV
Sbjct: 521 ESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 580

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +YN  I A CN    DKA +L  +M   G+ P      TL+ +         +  L + M
Sbjct: 581 SYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQM 640

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
             +NV P +SI  I+VD  V+ E
Sbjct: 641 LHKNVEPSSSIYGIMVDAYVRCE 663



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN ++ GLC+ G +D+ + L  +M   ++ P+  TY+ L  G     +      
Sbjct: 261 KPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLS 320

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF E + +G+     T +++++ LCK+ K+ +A ++ ++++  G+ P        V Y  
Sbjct: 321 LFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVP------TTVIYNT 374

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C++  L+ A  + + +    + P+ +TYN  I+ LC  E + KA DL ++ME  G
Sbjct: 375 LINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSG 434

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P+   F TL+ ++    +  K   +L  M ++ +         +V    KN
Sbjct: 435 VDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN 487



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +I GL + G    A ++F +M D  + PN +TYN++I G     D      L
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRL 251

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M+  G + +VVT+NV++  LC+  +MDE   L+D M    + PD F           
Sbjct: 252 RDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTR 311

Query: 124 -----------------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             + + AY C  L++GLCK GK+  A+++ + L   GL+P  V 
Sbjct: 312 TGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVI 371

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I+  C    +  A  +F  M+ + + P+ + +  L+    +    +K  +L+  M+
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 225 KRNVMPYASILSIIVD 240
           K  V P     + ++D
Sbjct: 432 KSGVDPSVETFNTLID 447



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 113/216 (52%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + +++ +++   CK G + +A  +   M  +++ PN   YNS+I  +  + D  +A  
Sbjct: 471 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALL 530

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M + G+ + +VT+N+++  LC++ ++DEA  L+  +   G+RPD      +V+Y  
Sbjct: 531 LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPD------VVSYNT 584

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I   C  G    A EL Q + + G+ P + T +  + AL +  ++     L+  M  K 
Sbjct: 585 IISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKN 644

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           V P+  I+  ++ +++R    SKV  L + M ++ +
Sbjct: 645 VEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 131/290 (45%), Gaps = 64/290 (22%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T + +++GLCK+G V KAK++F  +    + P  V YN+LI+G+C   D   A  +F +M
Sbjct: 336 TCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM 395

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAF------ 122
             R ++ D +T+N +++ LCK   + +A  L+  M + GV P         DA+      
Sbjct: 396 KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQL 455

Query: 123 --------------CEINIVAYGCLIDGLCKIGKLKNARE-------------------- 148
                          + +++++G ++   CK GK+  A                      
Sbjct: 456 EKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSI 515

Query: 149 ---------------LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
                          L + +  +G+  ++VTYN+ +  LC   Q+D+A +L   +  +G+
Sbjct: 516 IDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGL 575

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
            P+ V + T++ +   K +T K +ELL+ M+K  + P       +V  L 
Sbjct: 576 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALA 625



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 6/181 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   YN+IID   + G  ++A  L  +MK+  ++ ++VTYN L+ G C ++  +EAE L
Sbjct: 507 PNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 566

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              + ++GL+ DVV++N I+   C     D+A  LL  M + G+RP       +     L
Sbjct: 567 IYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRP------TLRTCHTL 620

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  L   G++ +   L Q +    + P+   Y I + A    E   K   L  +M  KG+
Sbjct: 621 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680

Query: 194 A 194
           A
Sbjct: 681 A 681



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 8/209 (3%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P++ + N L+    +     +    F  ++  G + D   +N ++        +D A  +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 109 LDLM--IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
           L  M   +G   PDAF      +Y  +I GL + GK  +A ++   +   G+ PN +TYN
Sbjct: 180 LRRMGRSEGAPPPDAF------SYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYN 233

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             I        ++    L   M   G  PN V +  L+    R     +   L+  M   
Sbjct: 234 TMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASH 293

Query: 227 NVMPYASILSIIVDLLVKNEISLNSIPQF 255
           +++P     SI+ D L +   S   +  F
Sbjct: 294 SMLPDGFTYSILFDGLTRTGESQTMLSLF 322



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 53/108 (49%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNTII   C +G  DKA EL  +M    I P + T ++L+     A   ++ E 
Sbjct: 576 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMEC 635

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           L+ +M+ + ++     + +++D   +     +   L   M + G+  D
Sbjct: 636 LYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ VTYNT+++GLCKE  +  A+ L  +M++  + P++ T+ +LIHG+C     +
Sbjct: 298 GCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLD 357

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF  M+++ L+ D+VT+N ++D +C+   +D+A  L D M    + P      N V
Sbjct: 358 KALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP------NHV 411

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LID  C+ G++++A      +   G++PN++TYN  I   C    + K       M
Sbjct: 412 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 471

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V  V+P+ + + TL+  +I++++     +LL  M+K  V P
Sbjct: 472 MVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQP 513



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  VTYN+++ GLC+ G  DKA E+F +M D  + P+V ++  LI GFC   +  EA  
Sbjct: 162 KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 221

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ EM  RG++ D+V+F+ ++    +  KMD A   L  M   G+ PD       V Y  
Sbjct: 222 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG------VIYTM 275

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C+ G + +A  +   +   G +P+VVTYN  ++ LC + ++  A  L  +M  +G
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P+   FTTL+  +  + +  K ++L  +M  + + P     + ++D + + 
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 388



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 16/229 (6%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN----PNVVTYNSLIHGF 61
           R FG+V  P+ V Y  +I G C+ G +  A    L+++DE +     P+VVTYN+L++G 
Sbjct: 262 RCFGLV--PDGVIYTMVIGGFCRAGLMSDA----LRVRDEMVGCGCLPDVVTYNTLLNGL 315

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           C      +AE L  EM +RG+  D+ TF  ++   C   K+D+A +L D M+   +RPD 
Sbjct: 316 CKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD- 374

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                IV Y  LIDG+C+ G L  A +L   +    + PN VTY+I I + C   Q++ A
Sbjct: 375 -----IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 429

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
                +M  KG+ PN + + +++  + R    SK  + L+ M    V P
Sbjct: 430 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSP 478



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  RE GV   P+  T+ T+I G C EG +DKA +LF  M ++ + P++VTYN+LI G
Sbjct: 327 LLNEMRERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 384

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C   D ++A  L+ +M  R +  + VT+++++D  C+  ++++A   LD MI  G+ P 
Sbjct: 385 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP- 443

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                NI+ Y  +I G C+ G +   ++  Q +    + P+++TYN  IH    +++M  
Sbjct: 444 -----NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHD 498

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  L   ME + V P+ V +  L+  F       +   +   M  + + P
Sbjct: 499 AFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEP 548



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 113/215 (52%), Gaps = 6/215 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYNT+IDG+C++G +DKA +L+  M    I PN VTY+ LI   C      +A  
Sbjct: 372 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 431

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM+++G+  +++T+N I+   C++  + +  + L  M+   V PD      ++ Y  
Sbjct: 432 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD------LITYNT 485

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K  K+ +A +L   + +  + P+VVTYN+ I+       + +A  +F  M  KG
Sbjct: 486 LIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKG 545

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           + P+   + +++   +    + +  +L   M +R 
Sbjct: 546 IEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 115/237 (48%), Gaps = 6/237 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NT T N ++   CK    DK   +  +M+   + P+VVT+N ++     A D   A  L 
Sbjct: 94  NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 153

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+ +GL+  +VT+N ++  LC++   D+A  +   M   GV PD      + ++  LI
Sbjct: 154 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPD------VRSFTILI 207

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C++G+++ A ++ + +   G+ P++V+++  I       +MD A     +M   G+ 
Sbjct: 208 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 267

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           P+ VI+T ++  F R    S  + +   M     +P     + +++ L K    L++
Sbjct: 268 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 324



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 107/212 (50%), Gaps = 6/212 (2%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           + G+   A + +  +   N   N  T N ++H +C A + ++ + +  EM  R +  DVV
Sbjct: 72  RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 131

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           T NV++D   +    + A  L+D M+  G++P       IV Y  ++ GLC+ G    A 
Sbjct: 132 THNVMVDARFRAGDAEAAMALVDSMVSKGLKP------GIVTYNSVLKGLCRSGMWDKAW 185

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           E+ + +   G+ P+V ++ I I   C   ++++A  ++ +M  +G+ P+ V F+ L+  F
Sbjct: 186 EVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLF 245

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            R+ +    +  LR M    ++P   I ++++
Sbjct: 246 ARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 277


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 117/235 (49%), Gaps = 6/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y+TI+DGLCK+G V +A  L  +M  + + PN+VTY  LI G C      EA  
Sbjct: 214 KPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGS 273

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EMM  G++ D+   N+++D  CK  K+ +A  ++  MI  G  PD F       Y  
Sbjct: 274 LLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVF------TYNS 327

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C   K+  A  +   +   G +P++V +   IH  C D+ ++KA  L  +M   G
Sbjct: 328 LIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMG 387

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
             P+   +TTL+  F +        EL  +M K   +P     ++I+D L K  +
Sbjct: 388 FVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENL 442



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V + ++I G CK+  ++KA  L  +M      P+V T+ +LI GFC A     A+ L
Sbjct: 355 PDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKEL 414

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+ M   G   ++ T  VI+D LCK   + EA  L   M +  +      ++NIV Y  L
Sbjct: 415 FLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNL------DLNIVIYSIL 468

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG+C  GKL  A EL  SL   GL  NV  Y I I  LC    +DKA DL ++ME  G 
Sbjct: 469 LDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGC 528

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN   +   +   + K E ++ I+ L  M  +     A+    I++ L  NE
Sbjct: 529 LPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTEFIINYLSTNE 581



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY  +I+GLCK G    A     +M++ N  PNVV Y++++ G C     +EA  L  EM
Sbjct: 184 TYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEM 243

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             +G++ ++VT+  ++  LC   +  EA  LLD M++ G+RPD    +NI     L+D  
Sbjct: 244 NGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPD-LQMLNI-----LVDAF 297

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK GK+  A+ +   +   G  P+V TYN  IH  C   +M++A  +F  M  +G  P+ 
Sbjct: 298 CKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDI 357

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           V+FT+L+  + +    +K + LL  M K   +P  +  + ++
Sbjct: 358 VVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLI 399



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 134/266 (50%), Gaps = 30/266 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+    N ++D  CKEG V +AK +   M      P+V TYNSLIH +C  N  NEA  
Sbjct: 284 RPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMR 343

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
           +F  M+ RG   D+V F  ++   CK++ +++A  LL+ M + G  PD          FC
Sbjct: 344 VFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFC 403

Query: 124 E-----------INIVAYG---------CLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           +           +N+  YG          ++DGLCK   L  A  L++++ ++ L  N+V
Sbjct: 404 QAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIV 463

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            Y+I +  +C+  +++ A +LF  +  KG+  N  I+T ++    ++    K  +LL +M
Sbjct: 464 IYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINM 523

Query: 224 DKRNVMPYASILSIIVD-LLVKNEIS 248
           ++   +P     ++ V  LL K EI+
Sbjct: 524 EENGCLPNNCTYNVFVQGLLTKKEIA 549



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 33/252 (13%)

Query: 26  LCKEGF---VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-G 81
           LC  G    +D+A +LF  M      P+V  +  L+           A  L   M    G
Sbjct: 48  LCWSGKLKNIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLG 107

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC--------- 123
           +++D +T N++++ LC+ + +     +L  M + G+ P         +  C         
Sbjct: 108 IEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAV 167

Query: 124 -----------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
                       +++  YG LI+GLCK G    A    + +      PNVV Y+  +  L
Sbjct: 168 GLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGL 227

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           C D  + +A +L  +M  KGV PN V +  L+          +   LL  M K  + P  
Sbjct: 228 CKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDL 287

Query: 233 SILSIIVDLLVK 244
            +L+I+VD   K
Sbjct: 288 QMLNILVDAFCK 299


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y+ +IDG CK   + +A++L+ QM D N  PNV TYN+ ++G        +A+ +
Sbjct: 155 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 214

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+  G   DV+T++ ++      RK D+A  L + MI  G RP+A      V Y CL
Sbjct: 215 YEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNA------VTYNCL 268

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK  K   A EL + +   G  P+ VTY   ++  CN  ++++A ++F +M  KG 
Sbjct: 269 LHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGH 328

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V +  L+  F R  +  +  +L + M  R   P     +I++D L K +   +++ 
Sbjct: 329 DPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVE 388

Query: 254 QFNR 257
            F R
Sbjct: 389 VFER 392



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 133/261 (50%), Gaps = 30/261 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TYN  ++GL ++G +  A+ ++ +M     +P+V+TY++LIHGF  A   ++A 
Sbjct: 188 CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAH 247

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            LF  M+ RG + + VT+N ++  LCK  K DEA  L   M++ G  PD          F
Sbjct: 248 ELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGF 307

Query: 123 CEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C +                    ++VAY CL+ G  + GK   AR+L Q +      P+ 
Sbjct: 308 CNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDT 367

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEV-KGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V++NI I  L   +++D A ++F  ME   G +P+ V + +L+     +   S+ +++ +
Sbjct: 368 VSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFK 427

Query: 222 SMDKRNVMPYASILSIIVDLL 242
            +D+  + P     +++++ +
Sbjct: 428 EIDRLKLSPDPHAFNVLLEAM 448



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 7/214 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +YN++++ LCK   V +A  +F  M  E ++ P+VV+Y+ LI GFC  ++   AE L+ +
Sbjct: 123 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQ 182

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+D     +V T+N  ++ L +  ++ +A  + + MI  G  PD      ++ Y  LI G
Sbjct: 183 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPD------VITYSTLIHG 236

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
                K   A EL +++   G  PN VTYN  +H LC + + D+AH+LF  M  +G  P+
Sbjct: 237 FSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPD 296

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V +TTL+  F    +  + +E+   M  +   P
Sbjct: 297 KVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDP 330



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 34/246 (13%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T +++I  LCK G VD A  L   M      P++ T++ LI+  C A+   EA+  F++ 
Sbjct: 51  TCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQE-FLQG 109

Query: 78  MDRGLQ---SDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRP---------DAFCE 124
           M+R +    S   ++N +++ LCK +K+ +A  +   M+ +  V P         D FC+
Sbjct: 110 MNRTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCK 169

Query: 125 I--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           I                    N+  Y   ++GL + G++ +A+ + + +  AG  P+V+T
Sbjct: 170 IDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVIT 229

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+  IH      + D+AH+LF  M  +G  PN V +  L+    ++++  +  EL R M 
Sbjct: 230 YSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMV 289

Query: 225 KRNVMP 230
           +R   P
Sbjct: 290 ERGCDP 295



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 35/265 (13%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVV---TYNSLIHGFCYANDGNEAE 71
           N V +   + GLCK G +++A E    M++   +       T +S+I   C A   + A 
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA------------TR---------LLD 110
            L   M+ RG   D+ T +++++ELCK  K+ EA            TR         LL+
Sbjct: 70  SLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLN 129

Query: 111 LMIQGGVRPDAFCEI-----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
            + +      AF              ++V+Y  LIDG CKI +L  A +L + +     +
Sbjct: 130 SLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCV 189

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           PNV TYN  ++ L    ++  A  ++ +M   G +P+ + ++TL+  F    +  +  EL
Sbjct: 190 PNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHEL 249

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
             +M  R   P A   + ++  L K
Sbjct: 250 FEAMISRGCRPNAVTYNCLLHGLCK 274



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           V +   +  LCK+ K+++A      M +              +   +I  LCK G++ +A
Sbjct: 12  VAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHS---VIQELCKAGRVDSA 68

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM--EVKGVAPNCVIFTTLM 204
             L +++ + G  P++ T+++ I+ LC  +++ +A +    M   +   A +C  + +L+
Sbjct: 69  LSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLL 128

Query: 205 PSFIRKNETSKVIELLRSM-DKRNVMPYASILSIIVD------------LLVKNEISLNS 251
            S  +  +  +   +  +M  +R+V+P     SI++D             L K  I LN 
Sbjct: 129 NSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNC 188

Query: 252 IP 253
           +P
Sbjct: 189 VP 190


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C P+ VTYNT+I G CK   V++  E+F +M    +  N VTYN LI G   A D + A+
Sbjct: 1006 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 1065

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +F EM+  G+  +++T+N ++D LCKN K+++A  + + + +  + P       I  Y 
Sbjct: 1066 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP------TIYTYN 1119

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             +I+G+CK GK+++  +L  +L+  G+ P+VV YN  I   C     ++A  LF +M+  
Sbjct: 1120 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 1179

Query: 192  GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            G  PN   + TL+ + +R  +     EL++ M        AS + ++ ++L
Sbjct: 1180 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 1230



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            +P  + YNTIIDGLCK   +D A  LF +M+ + I PNVVTY+SLI   C     ++A  
Sbjct: 867  EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 926

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            L  +M++R +  DV TF+ ++D   K  K+ EA +L D M++  + P      +IV Y  
Sbjct: 927  LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP------SIVTYSS 980

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            LI+G C   +L  A+++ + +      P+VVTYN  I   C  +++++  ++F +M  +G
Sbjct: 981  LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 1040

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +  N V +  L+    +  +     E+ + M    V P     + ++D L KN
Sbjct: 1041 LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 1093



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN IID LCK   V+ A + F +++ + I PNVVTY +L++G C ++  ++A  
Sbjct: 290 KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAAR 349

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ + +  +V+T++ ++D   KN K+ EA  L + M++  + PD      IV Y  
Sbjct: 350 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD------IVTYSS 403

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLC   ++  A ++   +   G + +VV+YN  I+  C  ++++    LF +M  +G
Sbjct: 404 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 463

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V + TL+  F +  +  K  E    MD   + P     +I++  L  N
Sbjct: 464 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDN 516



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 1    MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
            MA  +R     C+P+ VTY  +++GLCK G  D A  L  +M+   + P V+ YN++I G
Sbjct: 820  MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 879

Query: 61   FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             C     ++A  LF EM  +G++ +VVT++ ++  LC   +  +A+RLL  MI+  + PD
Sbjct: 880  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 939

Query: 121  AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
             F       +  LID   K GKL  A +L   + +  + P++VTY+  I+  C  +++D+
Sbjct: 940  VF------TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 993

Query: 181  AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            A  +F  M  K   P+ V + TL+  F +     + +E+ R M +R ++      +I++ 
Sbjct: 994  AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 1053

Query: 241  LLVK 244
             L +
Sbjct: 1054 GLFQ 1057



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY  +++GLC       A  L   M  + I PNV+TY++L+  F       EA+ 
Sbjct: 325 RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 384

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+   +  D+VT++ +++ LC + ++DEA ++ DLM+  G      C  ++V+Y  
Sbjct: 385 LFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG------CLADVVSYNT 438

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK  ++++  +L + +++ GL+ N VTYN  I        +DKA + F  M+  G
Sbjct: 439 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 498

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           ++P+   +  L+       E  K + +   M KR    +++ Y +++
Sbjct: 499 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 545



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT +++++G C    + +A  L  QM      PN VT+N+LIHG    N  +EA  
Sbjct: 762 EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMA 821

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+ +G Q D+VT+ V+++ LCK    D A  LL+ M QG + P       ++ Y  
Sbjct: 822 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEP------GVLIYNT 875

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK   + +A  L + +   G+ PNVVTY+  I  LCN  +   A  L  DM  + 
Sbjct: 876 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 935

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           + P+   F+ L+ +F+++ +  +  +L   M KR++ P    Y+S++
Sbjct: 936 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 982



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TY+ +I+  C+   +  A  +  +M      PN+VT +SL++G+C++   +EA  L 
Sbjct: 729 NHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV 788

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   G Q + VTFN ++  L  + K  EA  L+D M+  G +PD      +V YG ++
Sbjct: 789 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPD------LVTYGVVV 842

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G    A  L   + +  L P V+ YN  I  LC  + MD A +LF +ME KG+ 
Sbjct: 843 NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIR 902

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           PN V +++L+         S    LL  M +R + P     S ++D  VK
Sbjct: 903 PNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 952



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 126/242 (52%), Gaps = 20/242 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT  ++++G C+   V  A  L  +M +    P++V YN++I   C     N+A  
Sbjct: 255 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFD 314

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F E+  +G++ +VVT+  +++ LC + +  +A RLL  MI+  + P      N++ Y  
Sbjct: 315 FFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP------NVITYSA 368

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D   K GK+  A+EL + + R  + P++VTY+  I+ LC  +++D+A+ +F  M  KG
Sbjct: 369 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 428

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
              + V + TL+  F +       ++L R M +R               LV N ++ N++
Sbjct: 429 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG--------------LVSNTVTYNTL 474

Query: 253 PQ 254
            Q
Sbjct: 475 IQ 476



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V+YNT+I+G CK   V+   +LF +M    +  N VTYN+LI GF  A D ++A+
Sbjct: 429 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 488

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F +M   G+  D+ T+N+++  LC N ++++A  + + M +  +      +++IV Y 
Sbjct: 489 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM------DLDIVTYT 542

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+CK GK++ A  L  SL+  GL P++VTY   +  LC    + +   L+  M+ +
Sbjct: 543 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 602

Query: 192 GVAPN 196
           G+  N
Sbjct: 603 GLMKN 607



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 118/226 (52%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +N ++  + K    D    L  +M+   I  ++ T+N +I+ FC     + A  +
Sbjct: 186 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 245

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G + D VT   +++  C+  ++ +A  L+D M++ G +PD      IVAY  +
Sbjct: 246 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPD------IVAYNAI 299

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK  ++ +A +  + + R G+ PNVVTY   ++ LCN  +   A  L  DM  K +
Sbjct: 300 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 359

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            PN + ++ L+ +F++  +  +  EL   M + ++ P    Y+S++
Sbjct: 360 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLI 405



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 21/222 (9%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NTVTYNT+I G  + G VDKA+E F QM    I+P++ TYN L+ G C   +  +A  +F
Sbjct: 467 NTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 526

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M  R +  D+VT+  ++  +CK  K++EA  L   +   G++PD      IV Y  ++
Sbjct: 527 EDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD------IVTYTTMM 580

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLC  G L     L   + + GLM N  T         +D  +  + +L   M   G A
Sbjct: 581 SGLCTKGLLHEVEALYTKMKQEGLMKNDCTL--------SDGDITLSAELIKKMLSCGYA 632

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           P+       +   I+     K + LLR+   +    Y   LS
Sbjct: 633 PS-------LLKDIKSGVCKKALSLLRAFSGKTSYDYREKLS 667



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 6/214 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           ++ A +LF  M      P++V +N L+         +    L  +M   G+++D+ TFN+
Sbjct: 169 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 228

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C   ++  A  +L  M++ G  PD       V  G L++G C+  ++ +A  L  
Sbjct: 229 VINCFCCCFQVSLALSILGKMLKLGYEPDR------VTIGSLVNGFCRRNRVSDAVSLVD 282

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  P++V YN  I +LC  ++++ A D F ++E KG+ PN V +T L+      +
Sbjct: 283 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS 342

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             S    LL  M K+ + P     S ++D  VKN
Sbjct: 343 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKN 376



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 114/284 (40%), Gaps = 58/284 (20%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN----------------- 55
           KP+ VTY T++ GLC +G + + + L+ +MK E +  N  T +                 
Sbjct: 570 KPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSC 629

Query: 56  -------------------SLIHGFC----------YANDG------NEAEYLFIEMMDR 80
                              SL+  F            + +G      ++A  LF EM+  
Sbjct: 630 GYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKS 689

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
                ++ F+ ++  + K  K D    L + M   G+  + +       Y  LI+  C+ 
Sbjct: 690 RPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHY------TYSILINCFCRR 743

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
            +L  A  +   + + G  PN+VT +  ++  C+ +++ +A  L   M V G  PN V F
Sbjct: 744 SQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTF 803

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            TL+      N+ S+ + L+  M  +   P      ++V+ L K
Sbjct: 804 NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 847



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            KP+ V YNT+I G C++G  ++A  LF +MK++   PN   YN+LI       D   +  
Sbjct: 1147 KPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAE 1206

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
            L  EM   G   D  T  ++ + L   R
Sbjct: 1207 LIKEMRSCGFAGDASTIGLVTNMLHDGR 1234



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 84  SDVVTFNVIMDELCKNR----KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           S  V+   + + L K R    K+++A  L   M++    P      +IV +  L+  + K
Sbjct: 147 SSSVSGGDLRERLSKTRLRDIKLNDAIDLFSDMVKSRPFP------SIVDFNRLLSAIVK 200

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           + K      L + +   G+  ++ T+NI I+  C   Q+  A  +   M   G  P+ V 
Sbjct: 201 LKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVT 260

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +L+  F R+N  S  + L+  M +    P     + I+D L K +
Sbjct: 261 IGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTK 307


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+NT++DG CK G + +A E+  +M  ENI P+V+TY  L++G C       A 
Sbjct: 267 CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAF 326

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           YL  E++ +G   DV+ +  ++D LCK+ +++EA +L+  M   G      C   +V Y 
Sbjct: 327 YLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRG------CRTGVVMYS 380

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G C+ G +  ARE+   +    ++P + TYNI +  L  D  + KA  L  D+  +
Sbjct: 381 SLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVAR 440

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           G  P+ V + TL+    + N   +  +L   M  R   P    L  +V
Sbjct: 441 GYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVV 488



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 127/232 (54%), Gaps = 9/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +T N ++ G+CK+G V++A E+   MK     P+V+TYNS+IH  C A    EA  +
Sbjct: 202 PDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEI 261

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M       D+VTFN ++D  CK   +  A  +L+ M +  + PD      ++ Y  L
Sbjct: 262 LKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPD------VITYTIL 312

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLC++G+++ A  L + + R G +P+V+ Y   +  LC   ++++AH L  +M V+G 
Sbjct: 313 VNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGC 372

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               V++++L+  + R     K  E+L  M   N++P     +I++  L+K+
Sbjct: 373 RTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKD 424



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 114/215 (53%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + Y +++DGLCK G +++A +L  +M        VV Y+SL+ G+C A + ++A  +
Sbjct: 339 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+   +   + T+N+++  L K+  + +A  L+  ++  G  PD      +V Y  L
Sbjct: 399 LAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPD------VVTYNTL 452

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  +++ A +L+  +   G  PN VT    +  LC   ++D A  L ++M  K  
Sbjct: 453 IDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRH 512

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           APN V++T+L+    + +       +L +M  + V
Sbjct: 513 APNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGV 547



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 48/271 (17%)

Query: 12  CKPNTVT-----------------------------------YNTIIDGLCKEGFVDKAK 36
           C PN VT                                   +N +I GL K+G  D+A 
Sbjct: 58  CSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAV 117

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS--DVVTFNVIMD 94
           +LF  M+   + P +VTYN++I G C + +  +A  L  EM+ +G +S  D+VT+N +++
Sbjct: 118 KLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLIN 177

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
              +  ++ EA    + M   G+ PD   C I       L+ G+CK G ++ A E+   +
Sbjct: 178 AFYRASRIREACAFREKMKAAGINPDVLTCNI-------LVSGICKDGDVEEALEILDGM 230

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
             AG +P+V+TYN  IHALC   ++ +A ++   M     +P+ V F TL+  F +    
Sbjct: 231 KLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS---CSPDLVTFNTLLDGFCKAGML 287

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + +E+L  M + N++P     +I+V+ L +
Sbjct: 288 PRALEVLEEMCRENILPDVITYTILVNGLCR 318



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 6/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+   V Y++++ G C+ G V KA+E+  +M   N+ P + TYN ++ G       ++A 
Sbjct: 372 CRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAV 431

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +++ RG   DVVT+N ++D LCK  ++ EA  L D M   G  P      N V  G
Sbjct: 432 SLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFP------NDVTLG 485

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLC++G++ +A  L   ++R    PNVV Y   I  LC  ++MD A  +   M  +
Sbjct: 486 SVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQ 545

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           GVA +   +  L+ S       ++ + +   M  R  +P  S    + +  + N +
Sbjct: 546 GVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSV 601



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 9/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN+II  LC  G V +A E+   +K  + +P++VT+N+L+ GFC A     A  +
Sbjct: 237 PDVITYNSIIHALCVAGKVVEAAEI---LKTMSCSPDLVTFNTLLDGFCKAGMLPRALEV 293

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM    +  DV+T+ ++++ LC+  ++  A  LL+ +++ G  PD      ++AY  L
Sbjct: 294 LEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD------VIAYTSL 347

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+++ A +L + ++  G    VV Y+  +   C    + KA ++  +M    +
Sbjct: 348 VDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINM 407

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P    +  ++   I+    SK + L+  +  R  +P     + ++D L K
Sbjct: 408 VPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCK 458



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 8/220 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  +YN ++D L K G   +  +++  +     +PN+VT+  LI G C A     A  
Sbjct: 24  KHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALE 83

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               + +  +  DV  FNV++  L K+   D+A +L + M    V+P+      IV Y  
Sbjct: 84  FLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPE------IVTYNT 137

Query: 133 LIDGLCKIGKLKNARELSQSLTRAG--LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           +I GLCK G L+ AREL + + R G    P++VTYN  I+A     ++ +A      M+ 
Sbjct: 138 VISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKA 197

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            G+ P+ +    L+    +  +  + +E+L  M     +P
Sbjct: 198 AGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVP 237



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 55/120 (45%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           ++ +Y  L+D L K G      ++ + L  +G  PN+VT+ I I   C   Q  +A +  
Sbjct: 26  DVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFL 85

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             ++   VAP+  IF  L+    +     + ++L  +M+   V P     + ++  L K+
Sbjct: 86  RALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKS 145



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 43/89 (48%)

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G   +V +YN  +  L       +   ++ D+   G +PN V F  L+    +  +  + 
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRA 81

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +E LR++D+ +V P   I ++++  L K+
Sbjct: 82  LEFLRALDEFSVAPDVYIFNVLIHGLFKD 110


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 6/232 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+N +I  LC++G V+ A E+  Q+     +PN ++YN L+H FC     ++A 
Sbjct: 296 CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAM 355

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+ RG   D+V++N ++  LC++ ++D A  LL  +   G  P       +++Y 
Sbjct: 356 AFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP------VLISYN 409

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK K A EL   +   GL P+++TY+     LC +++++ A   F  ++  
Sbjct: 410 TVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM 469

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G+ PN V++  ++    ++ ET   I+L   M     MP  S  +I+++ L 
Sbjct: 470 GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 521



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 9/225 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R     C P+ + YN ++ G C  G VD A+    +   E    +  T ++LI G C   
Sbjct: 118 RRVLAACGPDVMAYNAMMAGYCGAGQVDAARRWCAERAVER---DAYTCDTLIRGLCGRG 174

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A  +  EM+ R    DVVT+ ++++  CK     +A +LLD M   G  PD     
Sbjct: 175 RTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPD----- 229

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            IV Y  +++G+C+ G++ +A E  ++L   G  PN V+YNI +  LC  E+ + A +L 
Sbjct: 230 -IVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELM 288

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +M  KG  PN V F  L+    RK      +E+L  + K    P
Sbjct: 289 GEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSP 333



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 6/181 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT++  LC+ G VD A EL  Q+KD+   P +++YN++I G   A    EA 
Sbjct: 366 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 425

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +GLQ D++T++ I   LC+  ++++A R    +   G+RP      N V Y 
Sbjct: 426 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRP------NTVLYN 479

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLCK  +  +A +L   +   G MPN  TY I I  L  +  + +A DL  ++  +
Sbjct: 480 AIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 539

Query: 192 G 192
           G
Sbjct: 540 G 540



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 6/216 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+++YN ++   CK+  +DKA      M      P++V+YN+L+   C + + + A 
Sbjct: 331 CSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV 390

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++ D+G    ++++N ++D L K  K  EA  LL+ M+  G++PD      I+ Y 
Sbjct: 391 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD------IITYS 444

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +  GLC+  ++++A      +   G+ PN V YN  I  LC   +   A DLF  M   
Sbjct: 445 TIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN 504

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           G  PN   +T L+     +    +  +LL  +  R 
Sbjct: 505 GCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 20/257 (7%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  G   +P+  T   +I  L   G   +A+ +          P+V+ YN+++ G+C A 
Sbjct: 88  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAA-----CGPDVMAYNAMMAGYCGAG 142

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A     E   R ++ D  T + ++  LC   +   A  +LD M++    PD     
Sbjct: 143 QVDAARRWCAE---RAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPD----- 194

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y  L++  CK    K A +L   +   G  P++VTYN+ ++ +C + ++D A +  
Sbjct: 195 -VVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFL 253

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            ++   G  PN V +  ++             EL+  M ++   P     ++++  L + 
Sbjct: 254 KNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRK 313

Query: 246 EI------SLNSIPQFN 256
            +       L  IP++ 
Sbjct: 314 GLVEPALEVLEQIPKYG 330


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 125/234 (53%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY   IDG  K G ++ A   F +M    + PNV  Y +LI G C   +  EA  
Sbjct: 518 RPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFS 577

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  ++ R +  DV T++V++  L +N KM EA  +   + + G+ P+AF       Y  
Sbjct: 578 VFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF------TYNS 631

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK G +  A +L + +   G+ P++VTYNI I  LC   ++++A +LF D+E +G
Sbjct: 632 LISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRG 691

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + PNCV +  ++  + +    +   +LL  M  R V P A I ++I++   K E
Sbjct: 692 LTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEE 745



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 128/255 (50%), Gaps = 28/255 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN++I G CK+G VDKA +L  +M  + INP++VTYN LI G C A +   A+ L
Sbjct: 624 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 683

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------CE 124
           F ++  RGL  + VT+  ++D  CK++    A +LL+ M+  GV PDAF         C+
Sbjct: 684 FDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCK 743

Query: 125 -------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                               + V++  LI+G CK GKL+ A  L + +     +PN VTY
Sbjct: 744 EEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTY 803

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
              I   C    M +A  L+L+M+ + V P    +T+L+  +      S+V  L   M  
Sbjct: 804 TSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVA 863

Query: 226 RNVMPYASILSIIVD 240
           + + P      +++D
Sbjct: 864 KGIEPDKMTYYVMID 878



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 124/232 (53%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y T++    KEG V++++ +  +M+++ I P+V  YNSLI GFC A    EA  
Sbjct: 448 KPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 507

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             +EM++R L+ +  T+   +D   K  +M+ A R  + M+  GV P      N+  Y  
Sbjct: 508 YLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLP------NVGIYTA 561

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK G +  A  + + +    ++ +V TY++ IH L  + +M +A  +F +++ KG
Sbjct: 562 LIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKG 621

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN   + +L+    ++    K  +LL  M  + + P     +I++D L K
Sbjct: 622 LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCK 673



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 121/217 (55%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I+G C E    +AK + L+M D  + P  +TYN+LI GF    D  +A  +
Sbjct: 274 PDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRI 333

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G++++++ +N +++ +CK  KM++A  ++  M++ GV PD+        Y  L
Sbjct: 334 KDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDS------QTYSLL 387

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G C+   +  A EL   + +  L P V+TY++ I+ LC    +   + +  +M + G+
Sbjct: 388 IEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGL 447

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V++TTLM +  ++    +   +L  M ++ ++P
Sbjct: 448 KPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILP 484



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   Y  +I+G CKEG V +A  +F  +    +  +V TY+ LIHG       +EA  +
Sbjct: 554 PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGI 613

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E+ ++GL  +  T+N ++   CK   +D+A++LL+ M   G+ PD      IV Y  L
Sbjct: 614 FSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPD------IVTYNIL 667

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+++ A+ L   +   GL PN VTY   +   C  +    A  L  +M ++GV
Sbjct: 668 IDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGV 727

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            P+  I+  ++    ++ +  K ++L + M ++      S  ++I
Sbjct: 728 PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLI 772



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 28/234 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN +IDGLCK G +++AK LF  ++   + PN VTY +++ G+C + +   A  L
Sbjct: 659 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 718

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------DAFCEI 125
             EM+ RG+  D   +NVI++  CK  K ++A  L   M++ G           + +C+ 
Sbjct: 719 LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKS 778

Query: 126 --------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                               N V Y  LID  CK G +  A+ L   +    +MP   TY
Sbjct: 779 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 838

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
              +H   N   M +   LF +M  KG+ P+ + +  ++ ++ R+    +  +L
Sbjct: 839 TSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL 892



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++ TY+ +I+G C+   + +A EL  +MK   + P V+TY+ +I+G C   +      
Sbjct: 378 EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNA 437

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  GL+ + V +  +M    K  +++E+  +L+ M + G+ PD FC      Y  
Sbjct: 438 ILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFC------YNS 491

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  +++ AR     +    L PN  TY   I       +M+ A   F +M   G
Sbjct: 492 LIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCG 551

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PN  I+T L+    ++   ++   + R +  R V+      S+++  L +N
Sbjct: 552 VLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRN 604



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  +TYN +IDG  ++G +++A  +  +M    I  N++ +N+L++G C A    +A  
Sbjct: 308 KPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALE 367

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EMM++G++ D  T++++++  C+ + M  A  LLD M +  + P       ++ Y  
Sbjct: 368 IMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAP------TVLTYSV 421

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLC+ G L+    + + +   GL PN V Y   + A   + +++++  +   M  +G
Sbjct: 422 IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG 481

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+   + +L+  F +     +    L  M +R + P A      +D
Sbjct: 482 ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFID 529



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 123/249 (49%), Gaps = 23/249 (9%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ ++ N+++  L K   V+   ++F  M    + P+V TY ++I   C   +  +A+ 
Sbjct: 186 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 245

Query: 73  LFIEM-----------------MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           + +EM                 +D+GL  D+ T++++++  C  ++  EA  +L  MI  
Sbjct: 246 VLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV 305

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G++P+       + Y  LIDG  + G ++ A  +   +   G+  N++ +N  ++ +C  
Sbjct: 306 GLKPEP------ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKA 359

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            +M+KA ++  +M  KGV P+   ++ L+    R    ++  ELL  M KR + P     
Sbjct: 360 GKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTY 419

Query: 236 SIIVDLLVK 244
           S+I++ L +
Sbjct: 420 SVIINGLCR 428



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 84/151 (55%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY ++ID  CK G + +AK L+L+M++ N+ P   TY SL+HG+    + +E   L
Sbjct: 798 PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 857

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G++ D +T+ V++D  C+   + EA +L D ++  G+   +   + +     +
Sbjct: 858 FEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVI 917

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
             G    G +  A E+ +S+ + G + N  +
Sbjct: 918 ARGFQIAGNMDEAAEVLRSMVKFGWVSNTTS 948



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 12/188 (6%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TV++NT+I+G CK G + +A  L  +M ++   PN VTY SLI   C A    EA+ L+
Sbjct: 764 STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLW 823

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           +EM +R +     T+  ++        M E + L + M+  G+ PD       + Y  +I
Sbjct: 824 LEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDK------MTYYVMI 877

Query: 135 DGLCKIGKLKNARELSQSL------TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           D  C+ G +  A +L   +       ++G    + T ++          MD+A ++   M
Sbjct: 878 DAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSM 937

Query: 189 EVKGVAPN 196
              G   N
Sbjct: 938 VKFGWVSN 945


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ VTYNT+++GLCKE  +  A+ L  +M++  + P++ T+ +LIHG+C     +
Sbjct: 44  GCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLD 103

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF  M+++ L+ D+VT+N ++D +C+   +D+A  L D M    + P      N V
Sbjct: 104 KALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP------NHV 157

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LID  C+ G++++A      +   G++PN++TYN  I   C    + K       M
Sbjct: 158 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 217

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V  V+P+ + + TL+  +I++++     +LL  M+K  V P
Sbjct: 218 MVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQP 259



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 16/229 (6%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN----PNVVTYNSLIHGF 61
           R FG+V  P+ V Y  +I G C+ G +  A    L+++DE +     P+VVTYN+L++G 
Sbjct: 8   RCFGLV--PDGVIYTMVIGGFCRAGLMSDA----LRVRDEMVGCGCLPDVVTYNTLLNGL 61

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           C      +AE L  EM +RG+  D+ TF  ++   C   K+D+A +L D M+   +RPD 
Sbjct: 62  CKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD- 120

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                IV Y  LIDG+C+ G L  A +L   +    + PN VTY+I I + C   Q++ A
Sbjct: 121 -----IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 175

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
                +M  KG+ PN + + +++  + R    SK  + L+ M    V P
Sbjct: 176 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSP 224



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  RE GV   P+  T+ T+I G C EG +DKA +LF  M ++ + P++VTYN+LI G
Sbjct: 73  LLNEMRERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 130

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C   D ++A  L+ +M  R +  + VT+++++D  C+  ++++A   LD MI  G+ P 
Sbjct: 131 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP- 189

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                NI+ Y  +I G C+ G +   ++  Q +    + P+++TYN  IH    +++M  
Sbjct: 190 -----NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHD 244

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  L   ME + V P+ V +  L+  F       +   +   M  + + P
Sbjct: 245 AFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEP 294



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYNT+IDG+C++G +DKA +L+  M    I PN VTY+ LI   C      +A  
Sbjct: 118 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 177

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM+++G+  +++T+N I+   C++  + +  + L  M+   V PD      ++ Y  
Sbjct: 178 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD------LITYNT 231

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K  K+ +A +L   + +  + P+VVTYN+ I+       + +A  +F  M  KG
Sbjct: 232 LIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKG 291

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + +++   +    + +  +L   M +R   P
Sbjct: 292 IEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAP 329



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 10/199 (5%)

Query: 41  QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           +M+   + P+ V Y  +I GFC A   ++A  +  EM+  G   DVVT+N +++ LCK R
Sbjct: 6   EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 65

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           ++ +A  LL+ M + GV PD      +  +  LI G C  GKL  A +L  ++    L P
Sbjct: 66  RLLDAEGLLNEMRERGVPPD------LCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRP 119

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++VTYN  I  +C    +DKA+DL+ DM  + + PN V ++ L+ S   K +       L
Sbjct: 120 DIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFL 179

Query: 221 RSMDKRNVMP----YASIL 235
             M  + ++P    Y SI+
Sbjct: 180 DEMINKGILPNIMTYNSII 198



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 99/183 (54%), Gaps = 6/183 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +ID  C++G V+ A     +M ++ I PN++TYNS+I G+C + + ++ +  
Sbjct: 154 PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 213

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM   +  D++T+N ++    K  KM +A +LL++M +  V+PD      +V Y  L
Sbjct: 214 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPD------VVTYNML 267

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G    G ++ A  + + +   G+ P+  TY   I+         +A  L  +M  +G 
Sbjct: 268 INGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGF 327

Query: 194 APN 196
           AP+
Sbjct: 328 APD 330



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN +I+G    G V +A  +F +M  + I P+  TY S+I+G   A +  EA  
Sbjct: 258 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 317

Query: 73  LFIEMMDRGLQSD 85
           L  EM+ RG   D
Sbjct: 318 LHDEMLQRGFAPD 330


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+I G CK   V++  E+F +M    +  N VTYN LI G   A D + A+
Sbjct: 187 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 246

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM+  G+  +++T+N ++D LCKN K+++A  + + + +  + P       I  Y 
Sbjct: 247 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP------TIYTYN 300

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++  +L  +L+  G+ P+VV YN  I   C     ++A  LF +M+  
Sbjct: 301 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 360

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  +     EL++ M        AS + ++ ++L
Sbjct: 361 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 411



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  + YNTIIDGLCK   +D A  LF +M+ + I PNVVTY+SLI   C     ++A  
Sbjct: 48  EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 107

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  DV TF+ ++D   K  K+ EA +L D M++  + P      +IV Y  
Sbjct: 108 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP------SIVTYSS 161

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+++ + +      P+VVTYN  I   C  +++++  ++F +M  +G
Sbjct: 162 LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 221

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V +  L+    +  +     E+ + M    V P     + ++D L KN
Sbjct: 222 LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 274



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           MA  +R     C+P+ VTY  +++GLCK G  D A  L  +M+   + P V+ YN++I G
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     ++A  LF EM  +G++ +VVT++ ++  LC   +  +A+RLL  MI+  + PD
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 120

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            F       +  LID   K GKL  A +L   + +  + P++VTY+  I+  C  +++D+
Sbjct: 121 VF------TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 174

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  +F  M  K   P+ V + TL+  F +     + +E+ R M +R ++      +I++ 
Sbjct: 175 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 234

Query: 241 LLVK 244
            L +
Sbjct: 235 GLFQ 238



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YNT+I G C++G  ++A  LF +MK++   PN   YN+LI       D   +  
Sbjct: 328 KPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAE 387

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM   G   D  T  ++ + L   R
Sbjct: 388 LIKEMRSCGFAGDASTIGLVTNMLHDGR 415


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 6/213 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YN  I GLCK G VD A+  F  +  +   P+  TY +LIHG+  A + +EA  L
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 771

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ RGL  ++VT+N +++ LCK+  +D A RL   + Q G+ P      N+V Y  L
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFP------NVVTYNTL 825

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CKIG +  A +L   +   G+ P+VVTY+  I+ LC    ++++  L   M   GV
Sbjct: 826 IDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
               + + TL+  +IR  E  K+ +L   M  R
Sbjct: 886 DSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIR 918



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 122/264 (46%), Gaps = 38/264 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +IDG CKEG +DKA   + +M +  ++ N++  ++++ G       +EA  L
Sbjct: 610 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 669

Query: 74  FIEMMDRG--------LQSDV------------------------VTFNVIMDELCKNRK 101
             +M+D G        L+SD+                        + +N+ +  LCK  K
Sbjct: 670 MQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGK 729

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +D+A R   ++   G  PD F       Y  LI G    G +  A  L   + R GL+PN
Sbjct: 730 VDDARRFFSMLSLKGFVPDNF------TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 783

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           +VTYN  I+ LC  E +D+A  LF  +  KG+ PN V + TL+  + +        +L  
Sbjct: 784 IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKD 843

Query: 222 SMDKRNVMPYASILSIIVDLLVKN 245
            M +  + P     S +++ L K+
Sbjct: 844 KMIEEGISPSVVTYSALINGLCKH 867



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 125/234 (53%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N    N++I+G CK G + +A+ +  +M D N+ P+  +YN+L+ G+C     +EA  
Sbjct: 364 KTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 423

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+  G++  V+T+N ++  LC+    D+A ++  LM++ GV PD       V Y  
Sbjct: 424 LCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDE------VGYST 477

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGL K+   + A  L + +   G   + +T+N  I  LC   +M +A ++F  M+  G
Sbjct: 478 LLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLG 537

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +P+ + + TL+  + + +   +  ++  +M++  + P   + + ++  L K+ 
Sbjct: 538 CSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSR 591



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 103/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY T+I G    G VD+A  L  +M    + PN+VTYN+LI+G C + + + A+ L
Sbjct: 747 PDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRL 806

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F ++  +GL  +VVT+N ++D  CK   MD A +L D MI+ G+ P      ++V Y  L
Sbjct: 807 FHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISP------SVVTYSAL 860

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK G ++ + +L   + +AG+   ++ Y   +       +M K H L+  M ++ +
Sbjct: 861 INGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIRCL 920

Query: 194 APNCV 198
           +   +
Sbjct: 921 STTAI 925



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%), Gaps = 5/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    + +++  CK+G VD+A     +M++  + PN+VTY+SLI+G+    D   A+ +
Sbjct: 224 PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGV 283

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M ++G+  +VVT+ +++   CK  KMDEA ++L      G++ +A    +  AYG L
Sbjct: 284 LKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLR-----GMQEEAALVPDERAYGVL 338

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C+ GK+ +A  L   + R GL  N+   N  I+  C   ++ +A  +   M    +
Sbjct: 339 IDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNL 398

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+   + TL+  + R+  TS+   L   M +  + P
Sbjct: 399 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEP 435



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 9/236 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY+++I+G    G V+ AK +   M ++ ++ NVVTY  LI G+C     +EAE 
Sbjct: 258 EPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEK 317

Query: 73  LFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAY 130
           +   M +   L  D   + V++D  C+  K+D+A RLLD M++ G++ + F C       
Sbjct: 318 VLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICN------ 371

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI+G CK G++  A  +   +    L P+  +YN  +   C +    +A +L   M  
Sbjct: 372 -SLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 430

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +G+ P  + + TL+    R       +++   M KR V P     S ++D L K E
Sbjct: 431 EGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKME 486



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y  +IDG C+ G +D A  L  +M    +  N+   NSLI+G+C   + +EAE +
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+D  L+ D  ++N ++D  C+     EA  L D M+Q G+ P       ++ Y  L
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEP------TVLTYNTL 443

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC++G   +A ++   + + G+ P+ V Y+  +  L   E  + A  L+ D+  +G 
Sbjct: 444 LKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGF 503

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             + + F T++    +  +  +  E+   M      P       ++D
Sbjct: 504 TKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLID 550



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +T+NT+I GLCK G + +A+E+F +MKD   +P+ +TY +LI G+C A++  +A  +   
Sbjct: 508 ITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M    +   +  +N ++  L K+R++ E T LL  M   G+ P      NIV YG LIDG
Sbjct: 568 MEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTP------NIVTYGALIDG 621

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK G L  A      +T  GL  N++  +  +  L    ++D+A+ L   M   G  P+
Sbjct: 622 WCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD 681

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              F   + S IR     K+ + L    K  ++P   + +I +  L K 
Sbjct: 682 HECF---LKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKT 727



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 24/252 (9%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKEL-FLQM--KDENINPNVVTYNSLIHGFC 62
           R    + K N V  + I+D + +   ++    L F Q   K +N  PNV +Y  L+H   
Sbjct: 54  RRCNAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILS 113

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLM----IQGGV 117
                +E      +++D     D    NVI DEL    R+   +  + D++    ++ G+
Sbjct: 114 RGRMYDETRAYLNQLVDLCKFKD--RGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGL 171

Query: 118 RPDAFCEIN----------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
             +A    +          + +   L++ L K G+   A  + Q + R G++P+V   +I
Sbjct: 172 TKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSI 231

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK-- 225
            ++A C D ++D+A      ME  GV PN V + +L+  ++   +      +L+ M +  
Sbjct: 232 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKG 291

Query: 226 --RNVMPYASIL 235
             RNV+ Y  ++
Sbjct: 292 VSRNVVTYTLLI 303



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 43/75 (57%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+ +I+GLCK G ++++ +L  QM    ++  ++ Y +L+ G+  + +  +   L
Sbjct: 852 PSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKL 911

Query: 74  FIEMMDRGLQSDVVT 88
           +  M  R L +  ++
Sbjct: 912 YDMMHIRCLSTTAIS 926


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY++I+DGLC  G VD A EL  ++K     P+ + Y +++ G C       AE
Sbjct: 333 CIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAE 392

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      D VTFN ++  LC+   +D A ++++ M + G  PD      IV Y 
Sbjct: 393 ELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPD------IVTYN 446

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGLC    + +A EL  +L   G  P++VT+N  +  LC+ ++ + A  L ++M   
Sbjct: 447 SIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHS 506

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              P+   F T++ S  +K    + IE L+ M +   +P  S  +I+VD L+K
Sbjct: 507 DCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLK 559



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN +I+ +C EG VD+A  +   +      P+ VTY  ++   C +    E E
Sbjct: 228 CEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVE 287

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM       D VTFN I+  LC+   +D A +++D M + G  PD      IV Y 
Sbjct: 288 ELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPD------IVTYS 341

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DGLC +G++ +A EL   L   G  P+ + Y   +  LC+ EQ + A +L  +M   
Sbjct: 342 SILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCS 401

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              P+ V F T++ S  +K    + I+++  M +    P     + I+D L
Sbjct: 402 DCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGL 452



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 121/241 (50%), Gaps = 6/241 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+NTI+  LC++G VD+A ++   M +    P++VTY+S++ G C     ++A 
Sbjct: 298 CAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAV 357

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   +   G + D + +  ++  LC   + + A  L+  M+     PD       V + 
Sbjct: 358 ELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDE------VTFN 411

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  LC+ G +  A ++ + ++  G  P++VTYN  I  LCN+  +D A +L  +++  
Sbjct: 412 TVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSY 471

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+ V F TL+      +      +L+ +M   +  P A+  + ++  L +  + L +
Sbjct: 472 GCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQA 531

Query: 252 I 252
           I
Sbjct: 532 I 532



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 120/259 (46%), Gaps = 27/259 (10%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN+IIDGLC E  +D A EL   ++     P++VT+N+L+ G C  +   +AE
Sbjct: 438 CNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAE 497

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAF 122
            L + MM      D  TFN ++  LC+   + +A   L +M + G  P         DA 
Sbjct: 498 QLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDAL 557

Query: 123 CEI------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
            +                   +++ Y  +I  + K GK++ A +L + +   GL P+ +T
Sbjct: 558 LKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTIT 617

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y    + +C ++  D+A  +   ++  G++P+   +  ++  F +   T   I+    M 
Sbjct: 618 YRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMV 677

Query: 225 KRNVMPYASILSIIVDLLV 243
               MP  S   I+++ L 
Sbjct: 678 SSGCMPDESTYIILLEALA 696



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 31/251 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+NT+I  LC++G VD+A ++  QM +   NP++VTYNS+I G C     ++A 
Sbjct: 403 CPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAM 462

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            L   +   G + D+VTFN ++  LC   + ++A +L+  M+     PDA          
Sbjct: 463 ELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSL 522

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C  N   Y  ++D L K GK + A +L   +T     P++
Sbjct: 523 CQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDL 580

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           +TYN  I  +    +M++A DL   M   G++P+ + + +L     R++ T + I +L  
Sbjct: 581 ITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCR 640

Query: 223 MDKRNVMPYAS 233
           +    + P A+
Sbjct: 641 LQDMGLSPDAT 651



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+   P+T T+N +I  LC  G V  A  +F  M     +P+VVTY+ L+   C A+   
Sbjct: 155 GMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYR 214

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  L  EM  +G + D+VT+NV+++ +C    +DEA  +L  +   G +PDA      V
Sbjct: 215 QAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDA------V 268

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  ++  LC   + K   EL   +      P+ VT+N  + +LC    +D+A  +   M
Sbjct: 269 TYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHM 328

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
              G  P+ V +++++            +ELL  +     K + + Y ++L
Sbjct: 329 SEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVL 379



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 12/229 (5%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V  N +I  LC  G V  A+ +F  +     +  VVTYN++++G+C A    +A  L   
Sbjct: 99  VPCNILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDARRLISG 155

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M       D  TFN ++  LC   ++ +A  + D M+  G  P      ++V Y  L+D 
Sbjct: 156 M---PFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSP------SVVTYSILLDA 206

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK    + A  L   +   G  P++VTYN+ I+A+CN+  +D+A ++  D+   G  P+
Sbjct: 207 TCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPD 266

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V +T ++ S        +V EL   M      P     + IV  L + 
Sbjct: 267 AVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQ 315



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 8/182 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TYN ++D L K G   +A +L   M   N  P+++TYN++I     A    EA 
Sbjct: 543 CIPNQSTYNIVVDALLKAGKTQEALKLLSGMT--NGTPDLITYNTVISNITKAGKMEEAL 600

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+  GL  D +T+  +   +C+    D A R+L  +   G+ PDA        Y 
Sbjct: 601 DLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDA------TFYN 654

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ G C+  +   A +    +  +G MP+  TY I + AL  +  +D+A  L +++   
Sbjct: 655 DILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSL 714

Query: 192 GV 193
           GV
Sbjct: 715 GV 716



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNT+I  + K G +++A +L   M    ++P+ +TY SL +G C  +  + A  +
Sbjct: 578 PDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRM 637

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI---NIVAY 130
              + D GL  D   +N I+   C+N + D A      M+  G  PD    I     +AY
Sbjct: 638 LCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAY 697

Query: 131 GCLID-------GLCKIGKLKNA 146
            CL+D        LC +G L  +
Sbjct: 698 ECLLDEAKQLLVNLCSLGVLDKS 720



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 12/196 (6%)

Query: 51  VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
           VV  N LI   C      +AE +F  +   G  + VVT+N +++  C+  ++++A RL+ 
Sbjct: 98  VVPCNILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDARRLIS 154

Query: 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170
            M      PD F       +  LI  LC  G++ +A  +   +   G  P+VVTY+I + 
Sbjct: 155 GM---PFPPDTF------TFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLD 205

Query: 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A C      +A  L  +M  KG  P+ V +  L+ +   + +  + + +L  +      P
Sbjct: 206 ATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKP 265

Query: 231 YASILSIIVDLLVKNE 246
            A   + ++  L  +E
Sbjct: 266 DAVTYTPVLKSLCGSE 281


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K ++ TYN +I GL  +GFV KA +L L+M++E I P VVTYN++IHG   +     A+ 
Sbjct: 305 KASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQV 364

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F+EM   GLQ DV+T+N +++  CK   + EA  L   +   G+ P       ++ Y  
Sbjct: 365 KFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAP------TVLTYNI 418

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C++G L+ AR L + +   G +P+V TY I +    N   +  A + F +M  KG
Sbjct: 419 LIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKG 478

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+C  + T + + +     +K   L   M    +       +I++D L K 
Sbjct: 479 LQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKT 531



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 129/296 (43%), Gaps = 64/296 (21%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYN +I GL + G V+ A+  F++M+   + P+V+TYNSL++G+C A    EA  L
Sbjct: 341 PTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLL 400

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL------------------------- 108
           F ++   GL   V+T+N+++D  C+   ++EA RL                         
Sbjct: 401 FGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHN 460

Query: 109 ----------LDLMIQGGVRPDAFC-----------------------------EINIVA 129
                      D M+  G++PD F                                + V 
Sbjct: 461 ACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVT 520

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LIDGLCK G L +A++L   +   GL P+ +TY   IHA C    + +A   F DM 
Sbjct: 521 YNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMI 580

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             G+AP+ V +T  + ++ R+          R M +  V P     ++++  L + 
Sbjct: 581 SDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRT 636



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 41/262 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYN +IDG C+ G +++A+ L  +M ++   P+V TY  L+ G   A     A   
Sbjct: 411 PTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREF 470

Query: 74  FIEMMDRGLQ-----------------------------------SDVVTFNVIMDELCK 98
           F EM+ +GLQ                                   SD VT+N+++D LCK
Sbjct: 471 FDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCK 530

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              +++A  L   M+  G++PD       + Y CLI   C+ G L+ AR+  + +   GL
Sbjct: 531 TGNLNDAKDLQMKMVHNGLQPDC------ITYTCLIHAHCERGLLREARKFFKDMISDGL 584

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+ VTY + IHA C    +  A+  F  M  +GV PN + +  L+ +  R   T     
Sbjct: 585 APSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYR 644

Query: 219 LLRSMDKRNVMPYASILSIIVD 240
               M +R ++P     ++++D
Sbjct: 645 HFHEMLERGLVPNKYTYTLLID 666



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 6/193 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TVTYN +IDGLCK G ++ AK+L ++M    + P+ +TY  LIH  C      EA   F
Sbjct: 517 DTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFF 576

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M+  GL    VT+ V +   C+   +  A      M++ GV P      N + Y  LI
Sbjct: 577 KDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEP------NEITYNVLI 630

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC+ G+ + A      +   GL+PN  TY + I   C +   + A   + +M   G+ 
Sbjct: 631 HALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIH 690

Query: 195 PNCVIFTTLMPSF 207
           P+ +    L   F
Sbjct: 691 PDYLTHKALFKGF 703



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YNT I      G + KA  L   M  E I+ + VTYN LI G C   + N+A+ 
Sbjct: 480 QPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKD 539

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L ++M+  GLQ D +T+  ++   C+   + EA +    MI  G+ P A      V Y  
Sbjct: 540 LQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSA------VTYTV 593

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I   C+ G L +A    + +   G+ PN +TYN+ IHALC   +   A+  F +M  +G
Sbjct: 594 FIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERG 653

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN   +T L+    ++      +     M +  + P
Sbjct: 654 LVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHP 691



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 120/283 (42%), Gaps = 46/283 (16%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNE- 69
           +P+ VTYNT++D   KEG  DK   L  +M+       PN VT+N +I G     D  E 
Sbjct: 234 EPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEA 293

Query: 70  ---------------------------------AEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                                            A+ L +EM + G+   VVT+N ++  L
Sbjct: 294 AEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGL 353

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            ++ +++ A      M   G++PD      ++ Y  L++G CK G LK A  L   L  A
Sbjct: 354 LQSGQVEAAQVKFVEMRAMGLQPD------VITYNSLLNGYCKAGSLKEALLLFGDLRHA 407

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P V+TYNI I   C    +++A  L  +M  +G  P+   +T LM         +  
Sbjct: 408 GLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMA 467

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            E    M  + + P         +  ++ E++L +I +  R +
Sbjct: 468 REFFDEMLSKGLQPDC----FAYNTRIRAELTLGAIAKAFRLR 506



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 81/153 (52%), Gaps = 6/153 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY  +I   C+ G + +A++ F  M  + + P+ VTY   IH +C   +   A  
Sbjct: 550 QPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYG 609

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M++ G++ + +T+NV++  LC+  +   A R    M++ G+ P+ +       Y  
Sbjct: 610 WFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKY------TYTL 663

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
           LIDG CK G  ++A      + + G+ P+ +T+
Sbjct: 664 LIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTH 696



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N ++  L      D    +  +M    I P++VTYN+L+  F      ++   L
Sbjct: 200 PDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAML 259

Query: 74  FIEMMDRG---LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             EM  RG   L +D VT NV++  L +   ++EA  +++     G+R     + +   Y
Sbjct: 260 LKEMETRGSGCLPND-VTHNVVITGLARKGDLEEAAEMVE-----GMRLSK--KASSFTY 311

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GL   G +K A +L   +   G+MP VVTYN  IH L    Q++ A   F++M  
Sbjct: 312 NPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRA 371

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ P+ + + +L+  + +     + + L   +    + P     +I++D
Sbjct: 372 MGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILID 421



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TYN +I  LC+ G    A   F +M +  + PN  TY  LI G C   +  +A  
Sbjct: 620 EPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMR 679

Query: 73  LFIEMMDRGLQSDVVTFNVI 92
            + EM   G+  D +T   +
Sbjct: 680 FYFEMHQNGIHPDYLTHKAL 699



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  PN  TY  +IDG CKEG  + A   + +M    I+P+ +T+ +L  GF   + 
Sbjct: 651 ERGLV--PNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGFDEGHM 708

Query: 67  GNEAEYL 73
            +  EYL
Sbjct: 709 NHAIEYL 715



 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 37/77 (48%)

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
             +   G+ P+V   N  +  L +  + D    +  +M   G+ P+ V + TL+ SF+++
Sbjct: 191 HEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKE 250

Query: 211 NETSKVIELLRSMDKRN 227
               KV  LL+ M+ R 
Sbjct: 251 GRNDKVAMLLKEMETRG 267


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/214 (34%), Positives = 121/214 (56%), Gaps = 6/214 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YNT+I GL ++G V KA +L   M  E ++P++ TYN +I+G C     ++A  
Sbjct: 360 KPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANN 419

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L    + +G   D+ TFN ++D  CK  KMD A  +LD M   GV PD      ++ Y  
Sbjct: 420 LLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPD------VITYNS 473

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK  K ++  E  + +   G +PN++TYNI I +LC   ++ +A DL  ++  +G
Sbjct: 474 ILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRG 533

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           + P+ V F T++  F    +  +  +L R M+++
Sbjct: 534 LIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQ 567



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 13/240 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N V Y T+I G  +E +  +A ELF +M    I P++ T+N L+H  C      E E
Sbjct: 177 CELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGE 236

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCK-------NRKMDEATRLLDLMIQGGVRPDAFCE 124
            L  +++  G+  ++ TFN+ +  LC+       N K+ EA   L  M+  G+ PD F  
Sbjct: 237 KLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDF-- 294

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                Y  +I G  K+GK+++A  + +     G +P+  TY   I  +C D  +D A  L
Sbjct: 295 ----TYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALAL 350

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +   KG+ P+ V++ TL+    ++    K ++L+  M K  + P     +++++ L K
Sbjct: 351 FEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCK 410



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 7/197 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+NT+IDG CK   +D A  +   M    + P+V+TYNS+++G C A    +    
Sbjct: 431 PDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMET 490

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  +M++G   +++T+N++++ LCK RK+ EA  LL+ +   G+ PD       V++G +
Sbjct: 491 FKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDP------VSFGTV 544

Query: 134 IDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           I G C  G L  A +L + + +   +   V TYNI I+A      MD A  LF +M  KG
Sbjct: 545 ISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKG 604

Query: 193 VAPNCVIFTTLMPSFIR 209
             P+   +  ++  F +
Sbjct: 605 CDPDSYTYRVMIDGFCK 621



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYNTII G  K G +  A  +    K +   P+  TY SLI G C   D + A  
Sbjct: 290 EPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALA 349

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF E + +GL+  +V +N ++  L +   + +A +L++ M + G+ PD      I  Y  
Sbjct: 350 LFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPD------IWTYNL 403

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCK+G + +A  L  +    G +P++ T+N  I   C   +MD A  +   M   G
Sbjct: 404 VINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHG 463

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V P+ + + +++    +  +   V+E  + + ++  +P     +I+++ L K
Sbjct: 464 VTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCK 515



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 7/189 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TYN +I+ LCK   V +A +L  ++++  + P+ V++ ++I GFC   D +EA 
Sbjct: 499 CLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAY 558

Query: 72  YLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            LF  M  +  +   V T+N++++   +   MD A +L   M   G  PD++       Y
Sbjct: 559 QLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSY------TY 612

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDG CK+G + +  +        G +P++ T+   I+ LC   ++ +A  +   M  
Sbjct: 613 RVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVR 672

Query: 191 KGVAPNCVI 199
            GV P  V+
Sbjct: 673 TGVVPEAVV 681



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 10/195 (5%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           ++G V +A ++F +M   N  P++ +YN++++        N+A  +++ M   G+  DV 
Sbjct: 88  RKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVC 147

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           TF + +   C+ ++   A RLL+ M      P   CE+N V Y  +I G  +      A 
Sbjct: 148 TFTIRIKSFCRTKRPLAALRLLNNM------PSQGCELNAVVYCTVISGFYEENYQVEAY 201

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           EL   + R G+ P++ T+N  +H LC    + +   L   +   GV PN   F   +   
Sbjct: 202 ELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGL 261

Query: 208 IRK----NETSKVIE 218
            RK       SKV+E
Sbjct: 262 CRKGVLEGANSKVVE 276



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
             TYN +I+   ++  +D A++LF +M D+  +P+  TY  +I GFC   + N      +
Sbjct: 574 VATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLL 633

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + ++ G    + TF  +++ LC   ++ EA  ++ LM++ GV P+A   I
Sbjct: 634 KEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVVTI 683



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 14/216 (6%)

Query: 34  KAKELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEAEYLFIEM---MDRGLQSDVVTF 89
           KA  +F  +K E+      +TY  +I    +  + +  E + +EM   +D  L   V  +
Sbjct: 22  KALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEGV--Y 79

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGKLKNARE 148
              M    +  K+ EA  + +       R D + CE +I +Y  +++ L + G    A +
Sbjct: 80  VSAMRNYGRKGKVQEAVDVFE-------RMDFYNCEPSIFSYNAIMNILVEYGYFNQAHK 132

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           +   +   G+ P+V T+ I I + C  ++   A  L  +M  +G   N V++ T++  F 
Sbjct: 133 VYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFY 192

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +N   +  EL   M +  + P+ +  + ++ +L K
Sbjct: 193 EENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCK 228


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+N +I  LC++G V+ A E+  Q+      PN ++YN L+H FC     ++A 
Sbjct: 294 CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAM 353

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+ RG   D+V++N ++  LC++ ++D A  LL  +       D  C   +++Y 
Sbjct: 354 AFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL------KDKGCAPVLISYN 407

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK K A EL   +   GL P+++TY+     LC +++++ A   F  ++  
Sbjct: 408 TVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM 467

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G+ PN V++  ++    ++ ET   I+L   M     MP  S  +I+++ L 
Sbjct: 468 GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 519



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 9/225 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R     C P+ + YN ++ G C  G +D A+ L  +M    + P+  TYN+LI G C   
Sbjct: 116 RRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRG 172

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A  +  EM+ R    DVVT+ ++++  CK     +A +LLD M   G  PD     
Sbjct: 173 RTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPD----- 227

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            IV Y  +++G+C+ G++ +A E  ++L   G  PN V+YNI +  LC  E+ + A +L 
Sbjct: 228 -IVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELM 286

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +M  KG  PN V F  L+    RK      +E+L  + K    P
Sbjct: 287 GEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTP 331



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 6/188 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT++  LC+ G VD A EL  Q+KD+   P +++YN++I G   A    EA 
Sbjct: 364 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 423

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +GLQ D++T++ I   LC+  ++++A R    +   G+RP      N V Y 
Sbjct: 424 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRP------NTVLYN 477

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLCK  +  +A +L   +   G MPN  TY I I  L  +  + +A DL  ++  +
Sbjct: 478 AIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 537

Query: 192 GVAPNCVI 199
           GV    +I
Sbjct: 538 GVVRKSLI 545



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+++YN ++   CK+  +DKA      M      P++V+YN+L+   C + + + A 
Sbjct: 329 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV 388

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++ D+G    ++++N ++D L K  K  EA  LL+ M+  G++PD      I+ Y 
Sbjct: 389 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD------IITYS 442

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +  GLC+  ++++A      +   G+ PN V YN  I  LC   +   A DLF  M   
Sbjct: 443 TIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN 502

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  PN   +T L+     +    +  +LL  +  R V+
Sbjct: 503 GCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 540



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 112/257 (43%), Gaps = 20/257 (7%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  G   +P+  T   +I  L   G   +A+ +          P+V+ YN+++ G+C A 
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVL-----AACGPDVMAYNAMVAGYCGAG 140

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A  L  EM    ++ D  T+N ++  LC   +   A  +LD M++    PD     
Sbjct: 141 QLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPD----- 192

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y  L++  CK    K A +L   +   G  P++VTYN+ ++ +C + ++D A +  
Sbjct: 193 -VVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFL 251

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            ++   G  PN V +  ++             EL+  M ++   P     ++++  L + 
Sbjct: 252 KNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRK 311

Query: 246 EI------SLNSIPQFN 256
            +       L  IP++ 
Sbjct: 312 GLVEPALEVLEQIPKYG 328


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 124/212 (58%), Gaps = 6/212 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PNTVTYNT+I  LCKE  V+ A EL   +  + + P+V T+NSLI G C  ++   A 
Sbjct: 368 CEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAM 427

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM ++G   D  T++++++ LC  R++ EA  LL  M   G      C  N+V Y 
Sbjct: 428 ELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSG------CARNVVVYN 481

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK  ++ +A ++   +   G+  + VTYN  I+ LC  +++++A  L   M ++
Sbjct: 482 TLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIME 541

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G+ P+   +TT++  F ++ +  +  +++++M
Sbjct: 542 GLKPDKFTYTTMLKYFCQQGDIKRAADIVQNM 573



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TY+ +I+ LC E  + +A  L  +M+      NVV YN+LI G C  N   +AE
Sbjct: 438 CDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAE 497

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M   G+    VT+N +++ LCK+++++EA +L+D MI  G++PD F    ++ Y 
Sbjct: 498 DIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKY- 556

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
                 C+ G +K A ++ Q++T  G  P++VTY   I  LC   ++D A  L   +++K
Sbjct: 557 -----FCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMK 611

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+      +  ++ +  ++  T + + L R M ++   P
Sbjct: 612 GMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPP 650



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 103/189 (54%), Gaps = 6/189 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N V YNT+IDGLCK   V  A+++F QM+   ++ + VTYN+LI+G C +    EA 
Sbjct: 473 CARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAA 532

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  GL+ D  T+  ++   C+   +  A  ++  M   G      CE +IV YG
Sbjct: 533 QLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNG------CEPDIVTYG 586

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCK G++  A +L +S+   G++     YN  I ALC  ++  +A  LF +M  K
Sbjct: 587 TLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEK 646

Query: 192 GVAPNCVIF 200
           G  P+ + +
Sbjct: 647 GDPPDVITY 655



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N +++GLC+ G + +  E+   M ++    +V TYNSLI G C   + +EA  +
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEI 359

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ R  + + VT+N ++  LCK   ++ AT L  ++   GV PD      +  +  L
Sbjct: 360 LHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPD------VCTFNSL 413

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC     + A EL + +   G  P+  TY+I I +LC++ ++ +A  L  +ME+ G 
Sbjct: 414 IQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGC 473

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           A N V++ TL+    + N      ++   M+   V   +   + +++ L K++
Sbjct: 474 ARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSK 526



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 31/253 (12%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+F V  KP+T  YN  +  L K   +   + L  +M  + + P+V T+N LI   C A+
Sbjct: 156 RDFAV--KPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAH 213

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG--------- 116
               A  +  +M + GL+ D  TF  +M    +   ++ A R+ +LM++ G         
Sbjct: 214 QLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVN 273

Query: 117 -------------------VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
                                 + FC  + V +  L++GLC+ G +K   E+   +   G
Sbjct: 274 VLVNGLCKEGRIEEALRFIYEEEGFCP-DQVTFNALVNGLCRTGHIKQGLEMMDFMLEKG 332

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
              +V TYN  I  LC   ++D+A ++   M  +   PN V + TL+ +  ++N      
Sbjct: 333 FELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAAT 392

Query: 218 ELLRSMDKRNVMP 230
           EL R +  + V+P
Sbjct: 393 ELARVLTSKGVLP 405



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 7/163 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY T++   C++G + +A ++   M      P++VTY +LI G C A   + A  
Sbjct: 544 KPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASK 603

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   +  +G+      +N ++  LCK ++  EA RL   M++ G  PD      ++ Y  
Sbjct: 604 LLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPD------VITYKI 657

Query: 133 LIDGLCKIG-KLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
           +  GLC  G  ++ A + +  +   G++P   ++      LC+
Sbjct: 658 VFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCS 700



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 11/133 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           C+P+ VTY T+I GLCK G VD A +L   +QMK   + P    YN +I   C      E
Sbjct: 578 CEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQA--YNPVIQALCKRKRTKE 635

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           A  LF EMM++G   DV+T+ ++   LC     + EA      M++ G+ P+        
Sbjct: 636 AMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPE------FP 689

Query: 129 AYGCLIDGLCKIG 141
           ++G L +GLC + 
Sbjct: 690 SFGFLAEGLCSLS 702



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 32/237 (13%)

Query: 38  LFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           LFL M +D  + P+   YN  +     AN     E L  +M+   +  DV TFN+++  L
Sbjct: 150 LFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRAL 209

Query: 97  CKNRKMDEATRLLDLMIQGGVRPD-----------------------------AFCEINI 127
           CK  ++  A  +L+ M   G+RPD                             + CE+  
Sbjct: 210 CKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTS 269

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V+   L++GLCK G+++ A  L       G  P+ VT+N  ++ LC    + +  ++   
Sbjct: 270 VSVNVLVNGLCKEGRIEEA--LRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDF 327

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M  KG   +   + +L+    +  E  + +E+L  M  R+  P     + ++  L K
Sbjct: 328 MLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCK 384



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 15/141 (10%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG- 67
           G+V  P    YN +I  LCK     +A  LF +M ++   P+V+TY  +  G C  N G 
Sbjct: 612 GMVLTPQA--YNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLC--NGGG 667

Query: 68  --NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA    +EM+++G+  +  +F  + + LC     D   +L++++++ G    +   I
Sbjct: 668 PIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQSETSI 727

Query: 126 NIVAYGCLIDGLCKIGKLKNA 146
                   I G  KI K  +A
Sbjct: 728 --------IRGFLKIQKFNDA 740


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 122/251 (48%), Gaps = 31/251 (12%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV   +   + T++ G C++G +  A+  F +M+   +  + VTY +LI+G C A +  
Sbjct: 350 GVVL--DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELK 407

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------- 119
           EAE +  EM D+GL  D VT+ V++D  CK  KM EA  + + M+Q  V P         
Sbjct: 408 EAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALS 467

Query: 120 DAFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           D  C                    E+NI  Y  LI+GLCK G L+ A      +  AGL 
Sbjct: 468 DGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK 527

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+V TY   I ALC  +++D+AH L  +M  KG+ P  V +  LM  F           L
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 220 LRSMDKRNVMP 230
           L  M ++N+ P
Sbjct: 588 LEWMLEKNIHP 598



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  + DGLCK+G V  A EL  +M  + +  N+ TYNSLI+G C A +  +A   
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            I+M + GL+ DV T+  I+  LC+++++D A  LL  M+  G++P       IV Y  L
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP------TIVTYNVL 571

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G C  G+++  + L + +    + PN  TYN  +   C ++ M    +++  M  + V
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN   +  L+    +     + +     M ++     AS  + ++ LL K +
Sbjct: 632 VPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY  +IDG CK G + +A  +  +M  + + PNVVTY +L  G C   D   A  L 
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  +GL+ ++ T+N +++ LCK   +++A R +  M + G++PD +       Y  +I
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY------TYTTII 537

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC+  +L  A  L Q +   G+ P +VTYN+ ++  C   +++    L   M  K + 
Sbjct: 538 GALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIH 597

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           PN   + +LM  +  +       E+ + M  + V+P  +  +I++
Sbjct: 598 PNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILI 642



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 29/245 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V Y ++I  LC EG V  A  +   M    +  +   + +++ GFC   D   A   F
Sbjct: 319 NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWF 378

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------FCEI 125
            EM  RGL +D VT+  +++ LC+  ++ EA R+L  M   G+  DA         +C++
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKV 438

Query: 126 --------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                               N+V Y  L DGLCK G +  A EL   +   GL  N+ TY
Sbjct: 439 GKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTY 498

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  I+ LC    +++A    +DM+  G+ P+   +TT++ +  +  E  +   LL+ M  
Sbjct: 499 NSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLD 558

Query: 226 RNVMP 230
           + + P
Sbjct: 559 KGIKP 563



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN++I+GLCK G +++A    + M +  + P+V TY ++I   C + + + A  L 
Sbjct: 494 NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLL 553

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+D+G++  +VT+NV+M+  C + +++   RLL+ M++  + P      N   Y  L+
Sbjct: 554 QEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHP------NTTTYNSLM 607

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    +K+  E+ + +    ++PN  TYNI I   C    M +A     +M  KG  
Sbjct: 608 KQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFR 667

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
                +  L+    +K + ++   L   M K  +     + +  +DL
Sbjct: 668 LTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDL 714



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY TII  LC+   +D+A  L  +M D+ I P +VTYN L++GFC +      + 
Sbjct: 527 KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+++ +  +  T+N +M + C  + M   T +   M+   V P      N   Y  
Sbjct: 587 LLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVP------NENTYNI 640

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           LI G CK   +K A      +   G      +YN  I  L   ++  +A  LF  M
Sbjct: 641 LIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 114/235 (48%), Gaps = 19/235 (8%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R++G+   P +   N +   LC+   +D+A +LF ++ ++N      +YN L+   C A 
Sbjct: 218 RQYGISPSPESC--NAV---LCRLP-LDEAVQLFQELPEKN----TCSYNILLKALCTAG 267

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  LF EM       DVVT+ +++   C   +++ A +LL  M   G+      E+
Sbjct: 268 RIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGL------EL 318

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N VAY  +I  LC  G++ +A  + + +   G++ +   +   +   C    +  A + F
Sbjct: 319 NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWF 378

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +M+ +G+A + V +T L+    R  E  +   +L+ M+ + +   A   ++++D
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLID 433



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 17/191 (8%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           L L+++   I+P+  + N+++         +EA  LF E+ ++    +  ++N+++  LC
Sbjct: 213 LLLRLRQYGISPSPESCNAVLCRLPL----DEAVQLFQELPEK----NTCSYNILLKALC 264

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
              ++ +A +L D M      PD      +V YG ++ G C + +L+ A +L   +   G
Sbjct: 265 TAGRIKDAHQLFDEMASP---PD------VVTYGIMVHGYCTLSELETAIKLLSEMAARG 315

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L  N V Y   I  LC++ Q+  A  +  DM + GV  +  +FTT+M  F RK + +   
Sbjct: 316 LELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAAR 375

Query: 218 ELLRSMDKRNV 228
                M KR +
Sbjct: 376 NWFDEMQKRGL 386


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 122/251 (48%), Gaps = 31/251 (12%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV   +   + T++ G C++G +  A+  F +M+   +  + VTY +LI+G C A +  
Sbjct: 350 GVVL--DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELK 407

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------- 119
           EAE +  EM D+GL  D VT+ V++D  CK  KM EA  + + M+Q  V P         
Sbjct: 408 EAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALS 467

Query: 120 DAFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           D  C                    E+NI  Y  LI+GLCK G L+ A      +  AGL 
Sbjct: 468 DGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK 527

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+V TY   I ALC  +++D+AH L  +M  KG+ P  V +  LM  F           L
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 220 LRSMDKRNVMP 230
           L  M ++N+ P
Sbjct: 588 LEWMLEKNIHP 598



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  + DGLCK+G V  A EL  +M  + +  N+ TYNSLI+G C A +  +A   
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            I+M + GL+ DV T+  I+  LC+++++D A  LL  M+  G++P       IV Y  L
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP------TIVTYNVL 571

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G C  G+++  + L + +    + PN  TYN  +   C ++ M    +++  M  + V
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN   +  L+    +     + +     M ++     AS  + ++ LL K +
Sbjct: 632 VPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY  +IDG CK G + +A  +  +M  + + PNVVTY +L  G C   D   A  L 
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  +GL+ ++ T+N +++ LCK   +++A R +  M + G++PD +       Y  +I
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY------TYTTII 537

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC+  +L  A  L Q +   G+ P +VTYN+ ++  C   +++    L   M  K + 
Sbjct: 538 GALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIH 597

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           PN   + +LM  +  +       E+ + M  + V+P  +  +I++
Sbjct: 598 PNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILI 642



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN++I+GLCK G +++A    + M +  + P+V TY ++I   C + + + A  L 
Sbjct: 494 NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLL 553

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+D+G++  +VT+NV+M+  C + +++   RLL+ M++  + P      N   Y  L+
Sbjct: 554 QEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHP------NTTTYNSLM 607

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    +K+  E+ + +    ++PN  TYNI I   C    M +A     +M  KG  
Sbjct: 608 KQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFR 667

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
                +  L+    +K + ++   L   M K  +     + +  +DL
Sbjct: 668 LTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDL 714



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 29/245 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V Y ++I  LC EG V  A  +   M    +  +   + +++ GFC   D   A   F
Sbjct: 319 NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWF 378

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------FCEI 125
            EM  RGL +D VT+  +++ LC+  ++ EA R+L  M   G+  DA         +C++
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKV 438

Query: 126 --------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                               N+V Y  L DGLCK G +  A EL   +   GL  N+ TY
Sbjct: 439 GKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTY 498

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  I+ LC    +++A    +DM+  G+ P+   +TT++ +  +  E  +   LL+ M  
Sbjct: 499 NSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLD 558

Query: 226 RNVMP 230
           + + P
Sbjct: 559 KGIKP 563



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY TII  LC+   +D+A  L  +M D+ I P +VTYN L++GFC +      + 
Sbjct: 527 KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+++ +  +  T+N +M + C  + M   T +   M+   V P      N   Y  
Sbjct: 587 LLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVP------NENTYNI 640

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           LI G CK   +K A      +   G      +YN  I  L   ++  +A  LF  M
Sbjct: 641 LIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 114/235 (48%), Gaps = 19/235 (8%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R++G+   P +   N +   LC+   +D+A +LF ++ ++N      +YN L+   C A 
Sbjct: 218 RQYGISPSPESC--NAV---LCRLP-LDEAVQLFQELPEKN----TCSYNILLKALCTAG 267

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  LF EM       DVVT+ +++   C   +++ A +LL  M   G+      E+
Sbjct: 268 RIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGL------EL 318

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N VAY  +I  LC  G++ +A  + + +   G++ +   +   +   C    +  A + F
Sbjct: 319 NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWF 378

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +M+ +G+A + V +T L+    R  E  +   +L+ M+ + +   A   ++++D
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLID 433



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 17/191 (8%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           L L+++   I+P+  + N+++         +EA  LF E+ ++    +  ++N+++  LC
Sbjct: 213 LLLRLRQYGISPSPESCNAVLCRLPL----DEAVQLFQELPEK----NTCSYNILLKALC 264

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
              ++ +A +L D M      PD      +V YG ++ G C + +L+ A +L   +   G
Sbjct: 265 TAGRIKDAHQLFDEMASP---PD------VVTYGIMVHGYCTLSELETAIKLLSEMAARG 315

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L  N V Y   I  LC++ Q+  A  +  DM + GV  +  +FTT+M  F RK + +   
Sbjct: 316 LELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAAR 375

Query: 218 ELLRSMDKRNV 228
                M KR +
Sbjct: 376 NWFDEMQKRGL 386



 Score = 37.0 bits (84), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 36/81 (44%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I G CK   + +A     +M ++       +YN+LI          EA  L
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692

Query: 74  FIEMMDRGLQSDVVTFNVIMD 94
           F +M    L ++   +N  +D
Sbjct: 693 FEKMRKERLTAEPDVYNFYID 713


>gi|357442909|ref|XP_003591732.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480780|gb|AES61983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 344

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 8/223 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G +   + V YNTIIDGLCK+  V+ A EL+ +M  E I+P+V T+NSLI+GFC      
Sbjct: 10  GKLVNSDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIGQLK 69

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M+ + +   V TF +++D LCK  KM EA  ++ +M++ GV P      N+V
Sbjct: 70  DAFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLP------NVV 123

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  +++G C + ++   + + ++++R G+ PN  +YNI I+  C  + +++A  LF +M
Sbjct: 124 TYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKIKIVNEALILFKEM 183

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
             +G+ P  V +++L+    +      +  L+R M   N + Y
Sbjct: 184 CCRGIVPITVTYSSLIDGLCKSTMLGSL--LMRCMLMVNHLIY 224



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 7/223 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY +I++G C    V+K K +F  +    + PN  +YN +I+GFC     NEA  L
Sbjct: 120 PNVVTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKIKIVNEALIL 179

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------DAFCEINI 127
           F EM  RG+    VT++ ++D LCK+  +        LM+   + P      DA C+ N 
Sbjct: 180 FKEMCCRGIVPITVTYSSLIDGLCKSTMLGSLLMRCMLMVNHLIYPLTVLYIDALCKSNH 239

Query: 128 VAYG-CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +     L+  +   G+LKNA+++ Q L   G   N+ TYNI I+ LC +   D+A  L  
Sbjct: 240 LDKAIALVKKIKDQGRLKNAQDVFQDLLIKGYSLNIQTYNIMINGLCKEGLFDEAEALLS 299

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            M+  G+ P+ V + T + +   K+E  K  +L R M  R ++
Sbjct: 300 KMDDYGIIPDAVTYETNIRALFHKDENEKAEKLFRKMIARGLL 342



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 41  QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           Q++ + +N +VV YN++I G C     N+A  L+ EM+   +  DV TFN ++   C   
Sbjct: 7   QIEGKLVNSDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIG 66

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           ++ +A  L   M+   + P  +       +  L+DGLCK GK+K A+ +   + + G++P
Sbjct: 67  QLKDAFGLFSQMVLKNINPSVY------TFTILVDGLCKEGKMKEAKSVIAMMMKDGVLP 120

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           NVVTY   +   C   +++K   +F  +   GVAPN   +  ++  F +    ++ + L 
Sbjct: 121 NVVTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKIKIVNEALILF 180

Query: 221 RSMDKRNVMPYASILSIIVDLLVKN 245
           + M  R ++P     S ++D L K+
Sbjct: 181 KEMCCRGIVPITVTYSSLIDGLCKS 205



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 6/166 (3%)

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
           + SDVV +N I+D LCK++ +++A  L   MI   + PD      +  +  LI G C IG
Sbjct: 13  VNSDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPD------VATFNSLIYGFCIIG 66

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           +LK+A  L   +    + P+V T+ I +  LC + +M +A  +   M   GV PN V +T
Sbjct: 67  QLKDAFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYT 126

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           ++M  +   NE +K   + R++ +  V P     +I+++   K +I
Sbjct: 127 SIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKIKI 172


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 14  PNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P  ++YN I+D + + +  V  A+ +F +M +  ++PNV TYN LI GFC A +     +
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLF 224

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM   G   +VVT+N I+D  CK RK+ EA +LL LM   G+ P      N+++Y  
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNP------NLISYNV 278

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLC+ G++K   E+ + +++   +P+ VT+N  I+  CN     +A  L  +M   G
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           ++PN V +TTL+ S  +    ++ +E L  M  R + P     + ++D
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 20/239 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY T+IDG  ++GF+ +A ++  +M +    P ++TYN+LI+G C      +A  L
Sbjct: 376 PNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGL 435

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++RG   DVV+++ I+   C+N+++++A +L   M+  G+ PD      +  Y  L
Sbjct: 436 LQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPD------VATYSSL 489

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK  +L    +L Q +   GL P+ VTY   I+A C +  +DKA  L  +M  KG 
Sbjct: 490 IQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGF 549

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +P+ V +  L+  F +++ T +   LL              L ++ +  V NEI+ N++
Sbjct: 550 SPDIVTYNVLINGFNKQSRTKEAKRLL--------------LKLLYEESVPNEITYNTL 594



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN ++YN +I+GLC+EG + +  E+  +M      P+ VT+N+LI+G+C   + ++A  L
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVL 330

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  GL  +VVT+  +++ +CK   ++ A   LD M   G+ P+         Y  L
Sbjct: 331 HAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNG------RTYTTL 384

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  + G LK A ++ + +   G  P ++TYN  I+  C   +M+ A  L  +M  +G 
Sbjct: 385 IDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF 444

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V ++T++  F R  E  K  +L   M  + + P  +  S ++  L K
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 120/217 (55%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+I+ +CK G +++A E   QM+D  ++PN  TY +LI GF       +A  +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++ G    ++T+N +++  C   +M++A+ LL  MI+ G  PD      +V+Y  +
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPD------VVSYSTI 454

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+  +L+ A +L   +   G+ P+V TY+  I  LC   ++ +  DLF +M   G+
Sbjct: 455 ISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGL 514

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V +T+L+ ++  + +  K + L   M ++   P
Sbjct: 515 PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSP 551



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 121/278 (43%), Gaps = 56/278 (20%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y+TII G C+   ++KA +L ++M  + I+P+V TY+SLI G C      E   L
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+  GL  D VT+  +++  C    +D+A RL D MIQ G  PD      IV Y  L
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPD------IVTYNVL 559

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN--------------------------- 166
           I+G  K  + K A+ L   L     +PN +TYN                           
Sbjct: 560 INGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLM 619

Query: 167 -----------------------ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
                                  + IH       ++KA++L+ +M   G AP+ V    L
Sbjct: 620 NEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMAL 679

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             S   + +  ++ +LL    K   +  A++  +++ +
Sbjct: 680 AKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGI 717



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 42/259 (16%)

Query: 6   REFGVVC-----------KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY 54
           R  G VC            P+ VTY ++I+  C EG +DKA  L  +M  +  +P++VTY
Sbjct: 497 RRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTY 556

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE---------------LCKN 99
           N LI+GF   +   EA+ L ++++      + +T+N ++D                 C  
Sbjct: 557 NVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMK 616

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             M+EA R+L+ M+Q G +      +N   Y  +I G  K+G ++ A  L + +  +G  
Sbjct: 617 GLMNEADRVLESMLQKGYK------LNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFA 670

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI-----RKNETS 214
           P+ VT      +L ++ +  + + L LD  +K    +C I    +   +     ++    
Sbjct: 671 PHSVTIMALAKSLYHEGKEVELNQL-LDYTLK----SCRITEAALAKVLIGINSKEGNMD 725

Query: 215 KVIELLRSMDKRNVMPYAS 233
            V  +L+ M    ++PY+S
Sbjct: 726 AVFNVLKDMALSGLLPYSS 744



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142
           +S    F++++    +   +++A  +++L    G  P       +++Y  ++D + +  +
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMP------GVLSYNAILDAVIRTKQ 182

Query: 143 -LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
            +K A  + + +  +G+ PNV TYNI I   C    ++     F +ME  G  PN V + 
Sbjct: 183 SVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYN 242

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           T++ ++ +  +  +  +LLR M  + + P
Sbjct: 243 TIIDAYCKLRKIGEAFKLLRLMALKGLNP 271


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  V++NT+I G CK G V++   L   M+ E + P+V T+++LI+G C     +E   
Sbjct: 174 RPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSL 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  +GL  + VTF V++D  CK  K+D A +   +M+  GVRPD      +V Y  
Sbjct: 234 LFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPD------LVTYNA 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK+G LK AR L   ++ +GL P+ +T+   I   C    M+ A ++   M  +G
Sbjct: 288 LINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEG 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V FT L+    R         +LR M      P     +++VD   K
Sbjct: 348 IELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCK 399



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 7/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+  +IDG CK G VD A + F  M  + + P++VTYN+LI+G C   D  EA  L
Sbjct: 245 PNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GL+ D +TF  ++D  CK   M+ A  +   M++ G+      E++ VA+  L
Sbjct: 305 VNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGI------ELDDVAFTVL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G++ +A  + + +  AG  P+  TY + +   C    +     L  +M+  G 
Sbjct: 359 ISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGH 418

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P  V +  LM    ++ +      LL +M    V P     +I+++   K+  S++ + 
Sbjct: 419 VPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVD-VD 477

Query: 254 QFNRQK 259
            FN +K
Sbjct: 478 IFNSEK 483



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 7/235 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P+  T++ +I+GLCKEG +D+   LF +M  + + PN VT+  LI G C     + A
Sbjct: 208 VC-PDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLA 266

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              F  M+ +G++ D+VT+N +++ LCK   + EA RL++ M   G+RPD       + +
Sbjct: 267 LKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDR------ITF 320

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDG CK G +++A E+ + +   G+  + V + + I  LC D ++  A  +  DM  
Sbjct: 321 TTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLS 380

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            G  P+   +T ++  F +K       +LL+ M     +P     + +++ L K 
Sbjct: 381 AGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQ 435



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 6/209 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           ++++   +L++ D    PN   +N L+HGFC       A  +F E+  RGL+  VV+FN 
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNT 182

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++   CK   ++E  RL  +M    V PD F       +  LI+GLCK G+L     L  
Sbjct: 183 LISGCCKAGAVEEGFRLKGVMESERVCPDVF------TFSALINGLCKEGRLDEGSLLFD 236

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   GL+PN VT+ + I   C   ++D A   F  M  +GV P+ V +  L+    +  
Sbjct: 237 EMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVG 296

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +  +   L+  M    + P     + ++D
Sbjct: 297 DLKEARRLVNEMSASGLRPDRITFTTLID 325



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 106/208 (50%), Gaps = 23/208 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T+ T+IDG CK G ++ A E+  +M +E I  + V +  LI G C     ++AE 
Sbjct: 314 RPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAER 373

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G + D  T+ +++D  CK   +    +LL  M   G  P       +V Y  
Sbjct: 374 MLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVP------GVVTYNA 427

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-- 190
           L++GLCK G++KNA+ L  ++   G+ PN +TYNI +            H   +D+++  
Sbjct: 428 LMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEG-------HSKHGSSVDVDIFN 480

Query: 191 --KGVAPNCVIFTTLMPSFIRKNETSKV 216
             KG+  +   +T L+      NE+SK 
Sbjct: 481 SEKGLVKDYASYTALV------NESSKT 502



 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 38/89 (42%)

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
           +G  PN   +N+ +H  C    +  A  +F ++  +G+ P  V F TL+    +     +
Sbjct: 136 SGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEE 195

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLLVK 244
              L   M+   V P     S +++ L K
Sbjct: 196 GFRLKGVMESERVCPDVFTFSALINGLCK 224


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+N +I  LC++G V+ A E+  Q+      PN ++YN L+H FC     ++A 
Sbjct: 93  CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAM 152

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+ RG   D+V++N ++  LC++ ++D A  LL  +   G  P       +++Y 
Sbjct: 153 AFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP------VLISYN 206

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK K A EL   +   GL P+++TY+     LC +++++ A   F  ++  
Sbjct: 207 TVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM 266

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G+ PN V++  ++    ++ ET   I+L   M     MP  S  +I+++ L 
Sbjct: 267 GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 318



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 6/188 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT++  LC+ G VD A EL  Q+KD+   P +++YN++I G   A    EA 
Sbjct: 163 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 222

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +GLQ D++T++ I   LC+  ++++A R    +   G+RP      N V Y 
Sbjct: 223 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRP------NTVLYN 276

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLCK  +  +A +L   +   G MPN  TY I I  L  +  + +A DL  ++  +
Sbjct: 277 AIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 336

Query: 192 GVAPNCVI 199
           GV    +I
Sbjct: 337 GVVRKSLI 344



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 8/219 (3%)

Query: 27  CKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV 86
           CK     +A +L  +M+D+   P++VTYN +++G C     ++A      +   G + + 
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           V++N+++  LC   + ++A  L+  M Q G  P      N+V +  LI  LC+ G ++ A
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPP------NVVTFNMLISFLCRKGLVEPA 116

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-KGVAPNCVIFTTLMP 205
            E+ + + + G  PN ++YN  +HA C  ++MDKA   FLD+ V +G  P+ V + TL+ 
Sbjct: 117 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAM-AFLDLMVSRGCYPDIVSYNTLLT 175

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  R  E    +ELL  +  +   P     + ++D L K
Sbjct: 176 ALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 214



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+++YN ++   CK+  +DKA      M      P++V+YN+L+   C + + + A 
Sbjct: 128 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV 187

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++ D+G    ++++N ++D L K  K  EA  LL+ M+  G++PD      I+ Y 
Sbjct: 188 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD------IITYS 241

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +  GLC+  ++++A      +   G+ PN V YN  I  LC   +   A DLF  M   
Sbjct: 242 TIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN 301

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  PN   +T L+     +    +  +LL  +  R V+
Sbjct: 302 GCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 339


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 133/246 (54%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N +ID LCKEG + +A+ +   M      P++VTYN+L+ G+C   + +EA  L
Sbjct: 263 PDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ RGL+ DV+ +NV++D  CK + +DEA  L   +    + P       I +Y  L
Sbjct: 323 FNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVP------TIASYNSL 376

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLC  G++ + ++L   +  +   P+VVTYNI I ALC + ++ +A  + + M  KGV
Sbjct: 377 IDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGV 436

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN V +  +M  +  +N  +   ++   M K  + P     +++++   K E+   +I 
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 254 QFNRQK 259
            F   +
Sbjct: 497 LFKEMR 502



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 130/237 (54%), Gaps = 7/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G    P+ VTYN +ID LCKEG + +A  + + M  + + PN+VTYN+++ G+C  N+ N
Sbjct: 398 GSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVN 457

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A+ +F  M+  GL+ D++ +NV+++  CK   +DEA  L   M    + PD      I 
Sbjct: 458 VAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPD------IA 511

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  LIDGLC +G++ + +EL   +  +G  P+V+TYNI + A C  +  DKA  LF  +
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI 571

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V+G+ P+      ++ +  +  +     + L+ +      P     +I+++ L K+
Sbjct: 572 -VEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKD 627



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 130/245 (53%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ + YN +IDG CK   VD+A  LF ++ ++N+ P + +YNSLI G C +   +  + 
Sbjct: 332 EPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKK 391

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM       DVVT+N+++D LCK  ++ EA  +L +M++ GV+P      NIV Y  
Sbjct: 392 LLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKP------NIVTYNA 445

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DG C    +  A+++   + ++GL P+++ YN+ I+  C  E +D+A  LF +M  K 
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKN 505

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P+   + +L+           V ELL  M      P     +I++D   K +    +I
Sbjct: 506 LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565

Query: 253 PQFNR 257
             F +
Sbjct: 566 SLFRQ 570



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y+ +IDGLCK+GFV  A  L  Q+ +  I  + VTYNSLI G C      E   
Sbjct: 192 QPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQ 251

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+   +  D  TFN+++D LCK  ++ EA  +L +M + G +PD      IV Y  
Sbjct: 252 LLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPD------IVTYNA 305

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G C    +  AREL   + + GL P+V+ YN+ I   C  + +D+A  LF ++  K 
Sbjct: 306 LMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKN 365

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P    + +L+         S V +LL  M      P     +I++D L K
Sbjct: 366 LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCK 417



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR      +P+ + YN +I+G CK   VD+A  LF +M+ +N+ P++ +YNSLI G C  
Sbjct: 464 NRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                 + L  EM D G   DV+T+N+++D  CK +  D+A  L   +++ G+ PD +  
Sbjct: 524 GRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTN 582

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             IV      D LCK  KLK A +  + L   G  PNV TY I I+ALC D    +A  L
Sbjct: 583 HAIV------DNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLL 636

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              ME     P+ + F  ++   +++NET K  +L   M  R ++
Sbjct: 637 LSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLV 681



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY T+I+GL K G +  A  L  +M+  ++ PN+V Y++LI G C     ++A  L  ++
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +RG+  D VT+N ++D  C   +  E T+LL  M++  V PD +       +  LID L
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDY------TFNILIDAL 275

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G++  A+ +   +++ G  P++VTYN  +   C+ E + +A +LF  M  +G+ P+ 
Sbjct: 276 CKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDV 335

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           + +  L+  + +     + + L + +  +N++P  +  + ++D L
Sbjct: 336 LNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGL 380



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT+NTII+G C  G + KA +    +  +    +  TY +LI+G         A +
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALH 181

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM    +Q ++V ++ ++D LCK+  + +A  L   + + G+  DA      V Y  
Sbjct: 182 LLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDA------VTYNS 235

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C +G+ +   +L   + R  + P+  T+NI I ALC + ++ +A  +   M  +G
Sbjct: 236 LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRG 295

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
             P+ V +  LM  +  +    +  EL   M KR + P     ++++D   K ++
Sbjct: 296 EKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKM 350



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   V   P T  ++ ++  + + G    A  LF Q++ + I+P++ T+  LI+ + + 
Sbjct: 44  NRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQ 103

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +    A  L   ++  G Q ++VTFN I++  C N  + +A      ++  G   D F  
Sbjct: 104 SHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQF-- 161

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                YG LI+GL K G++K A  L Q + ++ + PN+V Y+  I  LC D  +  A  L
Sbjct: 162 ----TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGL 217

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              +  +G+  + V + +L+          +V +LL  M + NV P     +I++D L K
Sbjct: 218 CSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCK 277



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 6/187 (3%)

Query: 59  HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
           H  C   + ++A   F  M+          F+ ++  + +      A  L   +   G+ 
Sbjct: 28  HKNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGIS 87

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           P      +I  +  LI+          A  L  ++ ++G  PN+VT+N  I+  C +  +
Sbjct: 88  P------SIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMI 141

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            KA D   ++  +G   +   + TL+    +  +    + LL+ M+K +V P   + S +
Sbjct: 142 FKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSAL 201

Query: 239 VDLLVKN 245
           +D L K+
Sbjct: 202 IDGLCKD 208


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+N +I  LC++G V+ A E+  Q+      PN ++YN L+H FC     ++A 
Sbjct: 168 CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAM 227

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+ RG   D+V++N ++  LC++ ++D A  LL  +   G  P       +++Y 
Sbjct: 228 AFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP------VLISYN 281

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGL K GK K A EL   +   GL P+++TY+     LC +++++ A   F  ++  
Sbjct: 282 TVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM 341

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G+ PN V++  ++    ++ ET   I+L   M     MP  S  +I+++ L 
Sbjct: 342 GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 393



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 8/234 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY  +++  CK     +A +L  +M+D+   P++VTYN +++G C     ++A 
Sbjct: 63  CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAI 122

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                +   G + + V++N+++  LC   + ++A  L+  M Q G  P      N+V + 
Sbjct: 123 EFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPP------NVVTFN 176

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV- 190
            LI  LC+ G ++ A E+ + + + G  PN ++YN  +HA C  ++MDKA   FLD+ V 
Sbjct: 177 MLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAM-AFLDLMVS 235

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +G  P+ V + TL+ +  R  E    +ELL  +  +   P     + ++D L K
Sbjct: 236 RGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 289



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 9/214 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + YN ++ G C  G +D A+ L  +M    + P+  TYN+LI G C       A  +  E
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+ R    DVVT+ ++++  CK     +A +LLD M   G  PD      IV Y  +++G
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPD------IVTYNVVVNG 111

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           +C+ G++ +A E  ++L   G  PN V+YNI +  LC  E+ + A +L  +M  KG  PN
Sbjct: 112 ICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN 171

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V F  L+    RK      +E+L  + K    P
Sbjct: 172 VVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTP 205



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT++  LC+ G VD A EL  Q+KD+   P +++YN++I G   A    EA 
Sbjct: 238 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 297

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +GLQ D++T++ I   LC+  ++++A R    +   G+RP      N V Y 
Sbjct: 298 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRP------NTVLYN 351

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +I GLCK  +  +A +L   +   G MPN  TY I I  L  +  + +A DL 
Sbjct: 352 AIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLL 405



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+++YN ++   CK+  +DKA      M      P++V+YN+L+   C + + + A 
Sbjct: 203 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV 262

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++ D+G    ++++N ++D L K  K  EA  LL+ M+  G++PD      I+ Y 
Sbjct: 263 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD------IITYS 316

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +  GLC+  ++++A      +   G+ PN V YN  I  LC   +   A DLF  M   
Sbjct: 317 TIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN 376

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           G  PN   +T L+     +    +  +LL  +  R
Sbjct: 377 GCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 411



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           + +N ++   C   ++D A RL+  M    V PDA+       Y  LI GLC  G+  NA
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEM---PVEPDAY------TYNTLIRGLCGRGRTANA 51

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
             +   + R   +P+VVTY I + A C      +A  L  +M  KG  P+ V +  ++  
Sbjct: 52  LAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 111

Query: 207 FIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             ++      IE L+++      P     +I++  L   E
Sbjct: 112 ICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAE 151



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 6   REFGVV----CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           R FG V     +PNTV YN II GLCK      A +LF  M      PN  TY  LI G 
Sbjct: 333 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 392

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
            Y     EA  L  E+  R  +  ++  ++I
Sbjct: 393 AYEGLIKEARDLLDELCSRAGEEILLDVHLI 423


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 122/251 (48%), Gaps = 31/251 (12%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV   +   + T++ G C++G +  A+  F +M+   +  + VTY +LI+G C A +  
Sbjct: 350 GVVL--DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELK 407

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------- 119
           EAE +  EM D+GL  D VT+ V++D  CK  KM EA  + + M+Q  V P         
Sbjct: 408 EAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALS 467

Query: 120 DAFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           D  C                    E+NI  Y  LI+GLCK G L+ A      +  AGL 
Sbjct: 468 DGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK 527

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+V TY   I ALC  +++D+AH L  +M  KG+ P  V +  LM  F           L
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 220 LRSMDKRNVMP 230
           L  M ++N+ P
Sbjct: 588 LEWMLEKNIHP 598



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  + DGLCK+G V  A EL  +M  + +  N+ TYNSLI+G C A +  +A   
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            I+M + GL+ DV T+  I+  LC+++++D A  LL  M+  G++P       IV Y  L
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP------TIVTYNVL 571

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G C  G+++  + L + +    + PN  TYN  +   C ++ M    +++  M  + V
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN   +  L+    +     + +     M ++     AS  + ++ LL K +
Sbjct: 632 VPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY  +IDG CK G + +A  +  +M  + + PNVVTY +L  G C   D   A  L 
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  +GL+ ++ T+N +++ LCK   +++A R +  M + G++PD +       Y  +I
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY------TYTTII 537

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC+  +L  A  L Q +   G+ P +VTYN+ ++  C   +++    L   M  K + 
Sbjct: 538 GALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIH 597

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           PN   + +LM  +  +       E+ + M  + V+P  +  +I++
Sbjct: 598 PNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILI 642



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN++I+GLCK G +++A    + M +  + P+V TY ++I   C + + + A  L 
Sbjct: 494 NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLL 553

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+D+G++  +VT+NV+M+  C + +++   RLL+ M++  + P      N   Y  L+
Sbjct: 554 QEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHP------NTTTYNSLM 607

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    +K+  E+ + +    ++PN  TYNI I   C    M +A     +M  KG  
Sbjct: 608 KQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFR 667

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
                +  L+    +K + ++   L   M K  +     + +  +DL
Sbjct: 668 LTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDL 714



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 29/245 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V Y ++I  LC EG V  A  +   M    +  +   + +++ GFC   D   A   F
Sbjct: 319 NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWF 378

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------FCEI 125
            EM  RGL +D VT+  +++ LC+  ++ EA R+L  M   G+  DA         +C++
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKV 438

Query: 126 --------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                               N+V Y  L DGLCK G +  A EL   +   GL  N+ TY
Sbjct: 439 GKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTY 498

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  I+ LC    +++A    +DM+  G+ P+   +TT++ +  +  E  +   LL+ M  
Sbjct: 499 NSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLD 558

Query: 226 RNVMP 230
           + + P
Sbjct: 559 KGIKP 563



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY TII  LC+   +D+A  L  +M D+ I P +VTYN L++GFC +      + 
Sbjct: 527 KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+++ +  +  T+N +M + C  + M   T +   M+   V P      N   Y  
Sbjct: 587 LLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVP------NENTYNI 640

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           LI G CK   +K A      +   G      +YN  I  L   ++  +A  LF  M
Sbjct: 641 LIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 114/235 (48%), Gaps = 19/235 (8%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R++G+   P +   N +   LC+   +D+A +LF ++ ++N      +YN L+   C A 
Sbjct: 218 RQYGISPSPESC--NAV---LCRLP-LDEAVQLFQELPEKN----TCSYNILLKALCTAG 267

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  LF EM       DVVT+ +++   C   +++ A +LL  M   G+      E+
Sbjct: 268 RIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGL------EL 318

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N VAY  +I  LC  G++ +A  + + +   G++ +   +   +   C    +  A + F
Sbjct: 319 NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWF 378

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +M+ +G+A + V +T L+    R  E  +   +L+ M+ + +   A   ++++D
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLID 433



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 17/191 (8%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           L L+++   I+P+  + N+++         +EA  LF E+ ++    +  ++N+++  LC
Sbjct: 213 LLLRLRQYGISPSPESCNAVLCRLPL----DEAVQLFQELPEK----NTCSYNILLKALC 264

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
              ++ +A +L D M      PD      +V YG ++ G C + +L+ A +L   +   G
Sbjct: 265 TAGRIKDAHQLFDEMASP---PD------VVTYGIMVHGYCTLSELETAIKLLSEMAARG 315

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L  N V Y   I  LC++ Q+  A  +  DM + GV  +  +FTT+M  F RK + +   
Sbjct: 316 LELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAAR 375

Query: 218 ELLRSMDKRNV 228
                M KR +
Sbjct: 376 NWFDEMQKRGL 386



 Score = 37.0 bits (84), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 36/81 (44%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I G CK   + +A     +M ++       +YN+LI          EA  L
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692

Query: 74  FIEMMDRGLQSDVVTFNVIMD 94
           F +M    L ++   +N  +D
Sbjct: 693 FEKMRKERLTAEPDVYNFYID 713


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y+ +IDG CK   + +A++L+ QM D N  PNV TYN+ ++G        +A+ +
Sbjct: 480 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 539

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+  G   DV+T++ ++      RK D+A  L + MI  G RP+A      V Y CL
Sbjct: 540 YEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNA------VTYNCL 593

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK  K   A EL + +   G  P+ VTY   ++  CN  ++++A ++F +M  KG 
Sbjct: 594 LHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGH 653

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V +  L+  F R  +  +  +L + M  R   P     +I++D L K +   +++ 
Sbjct: 654 DPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVE 713

Query: 254 QFNR 257
            F R
Sbjct: 714 VFER 717



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 140/280 (50%), Gaps = 35/280 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TYN  ++GL ++G +  A+ ++ +M     +P+V+TY++LIHGF  A   ++A 
Sbjct: 513 CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAH 572

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            LF  M+ RG + + VT+N ++  LCK  K DEA  L   M++ G  PD          F
Sbjct: 573 ELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGF 632

Query: 123 CEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C +                    ++VAY CL+ G  + GK   A++L Q +      P+ 
Sbjct: 633 CNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDT 692

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEV-KGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V++NI I  L   +++D A ++F  ME   G +P+ V + +L+     +   S+ +++ +
Sbjct: 693 VSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFK 752

Query: 222 SMDKRNVMPYASILSIIVD-----LLVKNEISLNSIPQFN 256
            +D+  + P     +++++     ++ + EI     P FN
Sbjct: 753 EIDRLKLSPDPHAFNVLLEAIKCGIVYQFEIRFKDPPAFN 792



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 112/213 (52%), Gaps = 7/213 (3%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           YN++++ LCK   V +A  +F  M  E +  P+VV+Y+ LI GFC  ++   AE L+ +M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +D     +V T+N  ++ L +  ++ +A  + + M+  G  PD      ++ Y  LI G 
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPD------VITYSTLIHGF 562

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
               K   A EL +++   G  PN VTYN  +H LC + + D+AH+LF  M  +G  P+ 
Sbjct: 563 SLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDR 622

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V +TTL+  F    +  + +E+   M  +   P
Sbjct: 623 VTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDP 655



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 121/251 (48%), Gaps = 34/251 (13%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++ T +++I  LCK G VD A  L   M      P++ T++ LI+  C A+   EA+ 
Sbjct: 371 QPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQE 430

Query: 73  LFIEMMDRGL---QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG----------GVRP 119
            F++ MDR +    S   ++N +++ LCK +K+ +A  +   M+             +  
Sbjct: 431 -FLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILI 489

Query: 120 DAFCEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           D FC+I                    N+  Y   ++GL + G++ +A+ + + +  AG  
Sbjct: 490 DGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCS 549

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+V+TY+  IH      + D+AH+LF  M  +G  PN V +  L+    ++++  +  EL
Sbjct: 550 PDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHEL 609

Query: 220 LRSMDKRNVMP 230
            R M +R   P
Sbjct: 610 FRKMVERGCDP 620



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 118/258 (45%), Gaps = 32/258 (12%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y+ +I  L + G +DKA+E  L++   NI P+  T +S+I   C A   + A  L   M+
Sbjct: 342 YDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMI 401

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATR---------------------LLDLMIQGGV 117
            RG   D+ T +++++ELCK  K+ EA                       LL+ + +   
Sbjct: 402 KRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKK 461

Query: 118 RPDAFCEI-----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
              AF              ++V+Y  LIDG CKI +L  A +L + +     +PNV TYN
Sbjct: 462 VHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYN 521

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             ++ L    ++  A  ++ +M   G +P+ + ++TL+  F    +  +  EL  +M  R
Sbjct: 522 AFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISR 581

Query: 227 NVMPYASILSIIVDLLVK 244
              P A   + ++  L K
Sbjct: 582 GCRPNAVTYNCLLHGLCK 599



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 119/234 (50%), Gaps = 10/234 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V +   + GLCK G +++A E    M+ E+++ +   Y+ LI     +   ++AE   
Sbjct: 304 NNVAWTAFLSGLCKSGKIEQAFEACRTMQ-ESLSSSQPVYDMLIRLLIESGRIDKAEEAC 362

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           +E+  R +Q    T + ++ ELCK  ++D A  LL+ MI+ G  PD      +  +  LI
Sbjct: 363 LEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPD------MATHSMLI 416

Query: 135 DGLCKIGKLKNARELSQSLTR--AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVK 191
           + LCK  K++ A+E  Q + R  +    +  +YN  +++LC  +++ +A  +F  M   +
Sbjct: 417 NELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSER 476

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              P+ V ++ L+  F + +E  +  +L + M   N +P  +  +  ++ L++ 
Sbjct: 477 SFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRK 530



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 112/234 (47%), Gaps = 8/234 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  TYN ++D L +   + +A ++F +M  + + PN  TY  L+   CY  + +EA  
Sbjct: 126 KHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVR 185

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM+D+G +     +  + + L    K  E +R+    ++  V       + ++    
Sbjct: 186 FFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRV------AVEMMLKKA 239

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+       K   A +L +++ ++G  P+   Y+  + A C  E +D+A  LFL+M V+ 
Sbjct: 240 LLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVES 299

Query: 193 VAP-NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            AP N V +T  +    +  +  +  E  R+M + ++     +  +++ LL+++
Sbjct: 300 KAPLNNVAWTAFLSGLCKSGKIEQAFEACRTM-QESLSSSQPVYDMLIRLLIES 352



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 8/178 (4%)

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
           +  DG EA   F  +  R  + DV T+N ++D+L ++R + +A ++ + M+  GV P+ F
Sbjct: 106 HLRDGGEALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGF 165

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                  Y  L+   C       A      +   G  P+   Y      L    +  +  
Sbjct: 166 ------TYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFS 219

Query: 183 DLF-LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +F  D+E K VA   ++   L+ +F+ +++  +  +L R+M K    P A+I S +V
Sbjct: 220 RVFGRDLE-KRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMV 276


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 128/250 (51%), Gaps = 8/250 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN V+Y+TIIDG  KEG VDKA  LF +M  +   P+VVTY+SLI G C A   N
Sbjct: 196 GYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMN 255

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +AE +   M D+G+  +  T+N+++   C   +++EA RLL  M   G++PD      +V
Sbjct: 256 KAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPD------VV 309

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI   CKIG+   AR +  S+ R G  PN   Y+I +H       +    DL LD+
Sbjct: 310 TYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDL-LDL 368

Query: 189 EVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            ++ G+      F  L+ ++ +     K +     M +  + P     S ++ +L K   
Sbjct: 369 MIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGR 428

Query: 248 SLNSIPQFNR 257
             +++  FN+
Sbjct: 429 VEDAVYHFNQ 438



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 121/221 (54%), Gaps = 10/221 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCYANDGNEA 70
           P+  +YN +I GLC E    +A EL L M  +   N +PNVV+Y+++I GF    + ++A
Sbjct: 163 PDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKA 222

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            +LF EM+ +G   DVVT++ ++D LCK + M++A  +L  M   GV P      N   Y
Sbjct: 223 YFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMP------NTRTY 276

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I G C +G+L+ A  L + ++ +GL P+VVTY + I   C   +  +A  +F  M  
Sbjct: 277 NIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVR 336

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
           KG  PN  I+  L+  +  K     V +LL  M  R+ +P+
Sbjct: 337 KGQKPNSTIYHILLHGYATKGALIDVRDLLDLM-IRDGIPF 376



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 104/181 (57%), Gaps = 6/181 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+Y+T+I  LCK G V+ A   F QM  E ++PN++++ SLIHG C   +  + E 
Sbjct: 410 RPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEE 469

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM++RG+  D +  N IMD LCK  ++ EA    D++I  GV+P      N+V+Y  
Sbjct: 470 LAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKP------NVVSYNT 523

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C +GK+  + +    +   GL P+  TYN  ++    + +++ A  L+ +M  K 
Sbjct: 524 LIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKD 583

Query: 193 V 193
           V
Sbjct: 584 V 584



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 10/227 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKEL-FLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           VT N +I GLC     D A ++ F +M +    P+V +YN+LI G C      EA  L +
Sbjct: 130 VTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLL 189

Query: 76  EMMDRG---LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            M   G      +VV+++ I+D   K  ++D+A  L D MI  G  PD      +V Y  
Sbjct: 190 HMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPD------VVTYSS 243

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK   +  A  + Q +   G+MPN  TYNI I   C+  Q+++A  L   M   G
Sbjct: 244 LIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSG 303

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V +  L+  + +    ++   +  SM ++   P ++I  I++
Sbjct: 304 LQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILL 350



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 131/238 (55%), Gaps = 6/238 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +R   +  +P++ TYN +++G  K G V+ A  L+ +M  +++    +T N ++HG   A
Sbjct: 542 DRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQA 601

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A  L+++M+DRG Q  + T+N ++  LC+N  +DEA R+ +      +R   F E
Sbjct: 602 GRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFE-----DLRSKEF-E 655

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +++  +  +I+ L K+G++  A+ L  ++   G +P+V+TY++ I +   +  ++++ DL
Sbjct: 656 LDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDL 715

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           FL ME  G A +  +   ++   + K +  +    L  +D++N    AS  ++++ ++
Sbjct: 716 FLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNFSVEASTAALLIPIV 773



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 10/234 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +  NTI+D LCKEG V +A++ F  +    + PNVV+YN+LI G+C+    +E+   
Sbjct: 481 PDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQ 540

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+  GL+ D  T+N +++   KN ++++A  L   M +  V+   FC I       +
Sbjct: 541 FDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVK---FCAIT---SNII 594

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GL + G++  AREL   +   G    + TYN  +  LC +  +D+A  +F D+  K  
Sbjct: 595 LHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEF 654

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
             +   F  ++ + ++     +   L  +M  R  +P+     I   L++K+ I
Sbjct: 655 ELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHV----ITYSLMIKSRI 704



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 7/222 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            +N +I    K G VDKA   F +M+   + P+VV+Y+++IH  C      +A Y F +M
Sbjct: 380 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQM 439

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +  GL  ++++F  ++  LC   +  +   L   MI  G+ PDA      +    ++D L
Sbjct: 440 VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDA------IFMNTIMDNL 493

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G++  A++    +   G+ PNVV+YN  I   C   +MD++   F  M   G+ P+ 
Sbjct: 494 CKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDS 553

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             +  L+  + +       + L R M +++V  + +I S I+
Sbjct: 554 WTYNALLNGYFKNGRVEDALALYREMFRKDV-KFCAITSNII 594



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 29/273 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT TYN +I G C  G +++A  L  +M    + P+VVTY  LI  +C      EA  +
Sbjct: 271 PNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSV 330

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------- 120
           F  M+ +G + +   +++++        + +   LLDLMI+ G+  +             
Sbjct: 331 FDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAK 390

Query: 121 ---------AFCEI-------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                    AF E+       ++V+Y  +I  LCKIG++++A      +   GL PN+++
Sbjct: 391 HGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIIS 450

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           +   IH LC+  +  K  +L  +M  +G+ P+ +   T+M +  ++    +  +    + 
Sbjct: 451 FTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVI 510

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
              V P     + ++D          SI QF+R
Sbjct: 511 HIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDR 543



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 43/235 (18%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC------ 62
           G   +P+ VTY  +I   CK G   +A+ +F  M  +   PN   Y+ L+HG+       
Sbjct: 301 GSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALI 360

Query: 63  ---------------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIM 93
                                      YA  G  ++A   F EM   GL+ DVV+++ ++
Sbjct: 361 DVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVI 420

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
             LCK  ++++A    + M+  G+ P      NI+++  LI GLC IG+ K   EL+  +
Sbjct: 421 HILCKIGRVEDAVYHFNQMVSEGLSP------NIISFTSLIHGLCSIGEWKKVEELAFEM 474

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSF 207
              G+ P+ +  N  +  LC + ++ +A D F DM +  GV PN V + TL+  +
Sbjct: 475 INRGIHPDAIFMNTIMDNLCKEGRVVEAQD-FFDMVIHIGVKPNVVSYNTLIDGY 528



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 96/212 (45%), Gaps = 13/212 (6%)

Query: 35  AKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           A  LF  M    +N    N      LI  FC     + A   F   +  G +   VT N 
Sbjct: 75  AVSLFNTMARSGVNMMAANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQ 134

Query: 92  IMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150
           ++  LC  ++ D+A  ++   M + G  PD F      +Y  LI GLC   K + A EL 
Sbjct: 135 LIKGLCDGKRTDDAMDMVFRRMPELGYTPDVF------SYNALIKGLCVEKKSQEALELL 188

Query: 151 QSLTRAG---LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
             +T  G     PNVV+Y+  I     + ++DKA+ LF +M  +G  P+ V +++L+   
Sbjct: 189 LHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGL 248

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +    +K   +L+ M  + VMP     +I++
Sbjct: 249 CKAQAMNKAEAILQHMFDKGVMPNTRTYNIMI 280



 Score = 43.9 bits (102), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 18/178 (10%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE-------ATRLLDLMIQGGVRPDAFCEI 125
           LF E++ +   + V  FN ++  + +             A  L + M + GV   A    
Sbjct: 36  LFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARSGVNMMA---A 92

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL- 184
           N    G LI   C +G+L  A        + G     VT N  I  LC+ ++ D A D+ 
Sbjct: 93  NRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDMV 152

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD-------KRNVMPYASIL 235
           F  M   G  P+   +  L+     + ++ + +ELL  M          NV+ Y++I+
Sbjct: 153 FRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTII 210


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTYN IID +C+EG VD+A+EL   +      PN V YN+++ G C      +AE
Sbjct: 12  CEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAE 71

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      +  T NVI++ L +   + + TR L+ M + G      C  N+V Y 
Sbjct: 72  ELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHG------CTANVVTYN 125

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C+ G + +A EL  ++   G  P++VTYN  +  LC+ +Q + A +L + M   
Sbjct: 126 AVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQN 185

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              P+ V F T++    +K    +  E+ + M ++   P ++  S I+  L K
Sbjct: 186 DCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAK 238



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 7/219 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N VTYN +I G+C++G VD A EL   M+     P++VTYN+L+ G C A+   +AE
Sbjct: 117 CTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAE 176

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L I+M       D VTFN I+  LC+   + +A  +   M      P+  C  N   Y 
Sbjct: 177 ELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQM------PEKGCNPNSTTYS 230

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GL K GK++ A EL   +   G   + + Y +   +L  ++++++   +   ++  
Sbjct: 231 TIIGGLAKAGKMEQALELLNEMASKGYNTDKM-YQLLTESLNKEDKIEEVVQVVHKLQDS 289

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G++P  V+F T++    R  +T   I++L  M     MP
Sbjct: 290 GISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMP 328



 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 6/221 (2%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           EL   M+ E   PNVVTYN +I   C   D ++A  L   +  RG + + V +N ++  L
Sbjct: 2   ELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGL 61

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C   +  +A  LLD M++    P+    +N++     ++ L + G L+      + +++ 
Sbjct: 62  CSIERWVDAEELLDEMVRENCPPNE-ATVNVI-----VNTLSRKGLLQKVTRYLEKMSKH 115

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G   NVVTYN  I  +C    +D A +L  +M+  G  P+ V + TL+      ++    
Sbjct: 116 GCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDA 175

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            EL+  M + + +P     + I+  L +  + L +   F +
Sbjct: 176 EELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQ 216



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 7/188 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+NTII  LC++G + +A E+F QM ++  NPN  TY+++I G   A    +A 
Sbjct: 187 CLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQAL 246

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +G  +D + + ++ + L K  K++E  +++  +   G+ P        V + 
Sbjct: 247 ELLNEMASKGYNTDKM-YQLLTESLNKEDKIEEVVQVVHKLQDSGISPQT------VLFN 299

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++  LC+ GK   A ++   +   G MP+ +TY I I  L  +  + +A +L   +  +
Sbjct: 300 TVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEARELVSRLCSR 359

Query: 192 GVAPNCVI 199
            V  N +I
Sbjct: 360 DVLSNSLI 367



 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P TV +NT++  LC+ G  D A ++   M      P+ +TY  LI G  Y     EA   
Sbjct: 293 PQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEAR-- 350

Query: 74  FIEMMDRGLQSDVVTFNVIMDE 95
             E++ R    DV++ ++I +E
Sbjct: 351 --ELVSRLCSRDVLSNSLIKNE 370


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  140 bits (353), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 133/246 (54%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N +ID LCKEG + +A+ +   M      P++VTYN+L+ G+C   + +EA  L
Sbjct: 263 PDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ RGL+ DV+ +NV++D  CK + +DEA  L   +    + P       I +Y  L
Sbjct: 323 FNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVP------TIASYNSL 376

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLC  G++ + ++L   +  +   P+VVTYNI I ALC + ++ +A  + + M  KGV
Sbjct: 377 IDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGV 436

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN V +  +M  +  +N  +   ++   M K  + P     +++++   K E+   +I 
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 254 QFNRQK 259
            F   +
Sbjct: 497 LFKEMR 502



 Score =  140 bits (352), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 130/237 (54%), Gaps = 7/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G    P+ VTYN +ID LCKEG + +A  + + M  + + PN+VTYN+++ G+C  N+ N
Sbjct: 398 GSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVN 457

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A+ +F  M+  GL+ D++ +NV+++  CK   +DEA  L   M    + PD      I 
Sbjct: 458 VAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPD------IA 511

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  LIDGLC +G++ + +EL   +  +G  P+V+TYNI + A C  +  DKA  LF  +
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI 571

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V+G+ P+      ++ +  +  +     + L+ +      P     +I+++ L K+
Sbjct: 572 -VEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKD 627



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 130/245 (53%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ + YN +IDG CK   VD+A  LF ++ ++N+ P + +YNSLI G C +   +  + 
Sbjct: 332 EPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKK 391

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM       DVVT+N+++D LCK  ++ EA  +L +M++ GV+P      NIV Y  
Sbjct: 392 LLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKP------NIVTYNA 445

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DG C    +  A+++   + ++GL P+++ YN+ I+  C  E +D+A  LF +M  K 
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKN 505

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P+   + +L+           V ELL  M      P     +I++D   K +    +I
Sbjct: 506 LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565

Query: 253 PQFNR 257
             F +
Sbjct: 566 SLFRQ 570



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 127/253 (50%), Gaps = 7/253 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR      +P+ + YN +I+G CK   VD+A  LF +M+ +N+ P++ +YNSLI G C  
Sbjct: 464 NRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                 + L  EM D G   DV+T+N+++D  CK +  D+A  L   +++ G+ PD +  
Sbjct: 524 GRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTN 582

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             IV      D LCK  KLK A +  + L   G  PNV TY I I+ALC D    +A  L
Sbjct: 583 HAIV------DNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLL 636

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              ME     P+ + F  ++   +++NET K  +L   M  R ++     L+   ++   
Sbjct: 637 LSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVNIEKSLNQSHNVFFP 696

Query: 245 NEISLNSIPQFNR 257
                 S+ +F R
Sbjct: 697 ASSGFQSVTEFYR 709



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y+ +IDGLCK+GFV  A  L  Q+ +  I  + VTYNSLI G C      E   
Sbjct: 192 QPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQ 251

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+   +  D  TFN+++D LCK  ++ EA  +L +M + G +PD      IV Y  
Sbjct: 252 LLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPD------IVTYNA 305

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G C    +  AREL   + + GL P+V+ YN+ I   C  + +D+A  LF ++  K 
Sbjct: 306 LMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKN 365

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P    + +L+         S V +LL  M      P     +I++D L K
Sbjct: 366 LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCK 417



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY T+I+GL K G +  A  L  +M+  ++ PN+V Y++LI G C     ++A  L  ++
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +RG+  D VT+N ++D  C   +  E T+LL  M++  V PD +       +  LID L
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDY------TFNILIDAL 275

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G++  A+ +   +++ G  P++VTYN  +   C+ E + +A +LF  M  +G+ P+ 
Sbjct: 276 CKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDV 335

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           + +  L+  + +     + + L + +  +N++P  +  + ++D L
Sbjct: 336 LNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGL 380



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT+NTII+G C  G + KA +    +  +    +  TY +LI+G         A +
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALH 181

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM    +Q ++V ++ ++D LCK+  + +A  L   + + G+  DA      V Y  
Sbjct: 182 LLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDA------VTYNS 235

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C +G+ +   +L   + R  + P+  T+NI I ALC + ++ +A  +   M  +G
Sbjct: 236 LIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRG 295

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
             P+ V +  LM  +  +    +  EL   M KR + P     ++++D   K ++
Sbjct: 296 EKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKM 350



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   V   P T  ++ ++  + + G    A  LF Q++ + I+P++ T+  LI+ + + 
Sbjct: 44  NRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQ 103

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +    A  L   ++  G Q ++VTFN I++  C N  + +A      ++  G   D F  
Sbjct: 104 SHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQF-- 161

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                YG LI+GL K G++K A  L Q + ++ + PN+V Y+  I  LC D  +  A  L
Sbjct: 162 ----TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGL 217

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              +  +G+  + V + +L+          +V +LL  M + NV P     +I++D L K
Sbjct: 218 CSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCK 277



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 6/187 (3%)

Query: 59  HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
           H  C   + ++A   F  M+          F+ ++  + +      A  L   +   G+ 
Sbjct: 28  HKNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGIS 87

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           P      +I  +  LI+          A  L  ++ ++G  PN+VT+N  I+  C +  +
Sbjct: 88  P------SIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMI 141

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            KA D   ++  +G   +   + TL+    +  +    + LL+ M+K +V P   + S +
Sbjct: 142 FKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSAL 201

Query: 239 VDLLVKN 245
           +D L K+
Sbjct: 202 IDGLCKD 208


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 15/226 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND------- 66
           P+ VTYNT++DGLCK   V++A  LF +M+     PN  ++N++I G C  +        
Sbjct: 426 PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQR 485

Query: 67  --GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA  L   M D G   DVVT++ ++  LC   ++D+A  LL+ M++   +P     
Sbjct: 486 GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKP----- 540

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             +V    LI GLCK G++K ARE+  ++  +G  P+VVTYN  +H  C   Q ++A +L
Sbjct: 541 -TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAREL 599

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             DM  +G+APN V +T L+    + N   +   +   M      P
Sbjct: 600 LSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP 645



 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 126/250 (50%), Gaps = 15/250 (6%)

Query: 12  CKPNTVTYNTIIDGLCKE---------GFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           C PN  ++NTII GLC++         G +D+A  L  +M D+   P+VVTY++LI G C
Sbjct: 459 CTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLC 518

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                ++A +L  +M+ R  +  VVT N ++  LCK  ++ EA  +LD M+  G  PD  
Sbjct: 519 SIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD-- 576

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
               +V Y  L+ G C+ G+ + AREL   +   GL PNVVTY   +  LC   ++ +A 
Sbjct: 577 ----VVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEAC 632

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            +F  M+  G APN   +T L+  F    +    ++L   M    + P   +   +   L
Sbjct: 633 GVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 692

Query: 243 VKNEISLNSI 252
            K+  S  ++
Sbjct: 693 CKSGRSARAL 702



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 18/253 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT N +++G C  G VDKA+EL   M DE   P+ V+Y +++ G C A    EA  
Sbjct: 209 EPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVR 268

Query: 73  LFIEMMDRGLQSDVVT---------FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           LF    DR L S   +         +N+++  LC+N ++DEA ++ + M +  V PD++ 
Sbjct: 269 LF---GDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSW- 324

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                +YG LIDGL K GKL +AR L Q L  +G+ P+ V Y   IH LC     D A +
Sbjct: 325 -----SYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 379

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           LF DM  +G  P+ V +  ++ +  ++    +  +L++ M +   +P     + ++D L 
Sbjct: 380 LFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLC 439

Query: 244 KNEISLNSIPQFN 256
           K+     ++  FN
Sbjct: 440 KSSRVEEALLLFN 452



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 107/208 (51%), Gaps = 6/208 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+T+I GLC    VD A+ L   M      P VVT N+LIHG C A    EA  +
Sbjct: 505 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 564

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G   DVVT+N ++   C+  + + A  LL  M+  G+ P      N+V Y  L
Sbjct: 565 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAP------NVVTYTAL 618

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK  +L  A  +   +  +G  PN+ TY   I   C+  Q+D    LF +M   G+
Sbjct: 619 VSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI 678

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLR 221
           +P+ V++ TL     +   +++ +E+LR
Sbjct: 679 SPDHVVYGTLAAELCKSGRSARALEILR 706



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 117/240 (48%), Gaps = 15/240 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ +Y  +IDGL K G ++ A+ LF ++    + P+ V Y SLIHG C AN  ++A  L
Sbjct: 321 PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 380

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M  RG     VT+NV++D  CK   ++EA  L+  MI+ G  PD      +V Y  +
Sbjct: 381 FADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPD------VVTYNTV 434

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE---------QMDKAHDL 184
           +DGLCK  +++ A  L   + R G  PN  ++N  I  LC            ++D+A  L
Sbjct: 435 MDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRL 494

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M   G  P+ V ++TL+              LL  M KR   P     + ++  L K
Sbjct: 495 LKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCK 554



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP  VT NT+I GLCK G + +A+E+   M     +P+VVTYN+L+HG C A     A 
Sbjct: 538 CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAR 597

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ RGL  +VVT+  ++  LCK  ++ EA  +   M   G  P      N+  Y 
Sbjct: 598 ELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP------NLFTYT 651

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            LI G C  G++    +L   +  AG+ P+ V Y      LC   +  +A ++ 
Sbjct: 652 ALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEIL 705



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 11/186 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++ GLCK   + +A  +F QMK     PN+ TY +LI GFC A   +    L
Sbjct: 610 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 669

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG--GVRPDAFCEINIVAYG 131
           F EM+  G+  D V +  +  ELCK+ +   + R L+++ +G   +R +A+ +     Y 
Sbjct: 670 FGEMVCAGISPDHVVYGTLAAELCKSGR---SARALEILREGRESLRSEAWGD---EVYR 723

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF---LDM 188
             +DGL + GK++ A    + + R G +P        +  LC   Q  +A  +    +D+
Sbjct: 724 FAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDL 783

Query: 189 EVKGVA 194
              G A
Sbjct: 784 AYGGKA 789



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 42/239 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    YN +ID L K    +  K++   M D    P+  T+ +++ G C A   +EAE +
Sbjct: 42  PYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELV 101

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  R +     T + +  ELC    M+ A +LL++M      P A    N  AY  +
Sbjct: 102 MDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIM------PVA----NSSAYNIV 151

Query: 134 IDGLCKIGKLKNARELSQSLTR--------------AGLM------------------PN 161
           +  LCK  ++ +A EL+++++                GLM                  P 
Sbjct: 152 VVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPC 211

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +VT N+ +   C+  Q+DKA +L   M  +  AP+ V + T++    +     + + L 
Sbjct: 212 LVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLF 270



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 119/266 (44%), Gaps = 38/266 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P++ T+ TI+ GLCK G +D+A+ +  +M+   I P   T + L H  C       A 
Sbjct: 75  CFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERA- 133

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +  +E+M     S    +N+++  LCK  ++D+A  L   M +  + P A   ++ V  G
Sbjct: 134 FQLLEIMPVANSS---AYNIVVVALCKAARVDDALELARTMSEKRI-PLAAGSLDSVLVG 189

Query: 132 ---------------------CLI------DGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                CL+      +G C  G++  AREL +++      P+ V+
Sbjct: 190 LMDSGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVS 249

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI------FTTLMPSFIRKNETSKVIE 218
           Y   +  LC   ++++A  LF D E+   + +         +  ++    + +   + ++
Sbjct: 250 YCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQ 309

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           +   M++RNV P +    I++D L K
Sbjct: 310 MFEKMNERNVSPDSWSYGILIDGLAK 335


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN +++G+CKEG +D+A +    M      PNV+T+N ++   C      +AE
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE 329

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G    VVTFN++++ LC+   +  A  +L+ M Q G +P      N ++Y 
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP------NSLSYN 383

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G CK  K+  A E  + +   G  P++VTYN  + ALC D +++ A ++   +  K
Sbjct: 384 PLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSK 443

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G +P  + + T++    +  +T K I+LL  M  +++ P     S +V  L +
Sbjct: 444 GCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNTI+  LC  G + +A E+  +M   +  P+V+TY  LI   C  +    A  L
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKL 261

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG   DVVT+NV+++ +CK  ++DEA + L+ M      P + C+ N++ +  +
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM------PSSGCQPNVITHNII 315

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  +C  G+  +A +L   + R G  P+VVT+NI I+ LC    + +A D+   M   G 
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGC 375

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + +  L+  F ++ +  + IE L  M  R   P
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYP 412



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 126/243 (51%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N +I+ LC++G + +A ++  +M      PN ++YN L+HGFC     + A   
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ RG   D+VT+N ++  LCK+ K+++A  +L+ +   G  P       ++ Y  +
Sbjct: 402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP------VLITYNTV 455

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGL K GK   A +L   +    L P+ +TY+  +  L  + ++D+A   F + E  G+
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGI 515

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN V F ++M    +  +T + I+ L  M  R   P  +  +I+++ L    ++  ++ 
Sbjct: 516 RPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE 575

Query: 254 QFN 256
             N
Sbjct: 576 LLN 578



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY  +I+  C++  V  A +L  +M+D    P+VVTYN L++G C     +EA 
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               +M   G Q +V+T N+I+  +C   +  +A +LL  M++ G  P      ++V + 
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP------SVVTFN 348

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+ LC+ G L  A ++ + + + G  PN ++YN  +H  C +++MD+A +    M  +
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V + T++ +  +  +    +E+L  +  +   P     + ++D L K
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 116/217 (53%), Gaps = 9/217 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +I G CK G ++ A  +  +M   +++P+VVTYN+++   C +    +A  +
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ R    DV+T+ ++++  C++  +  A +LLD M   G  PD      +V Y  L
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD------VVTYNVL 280

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+CK G+L  A +    +  +G  PNV+T+NI + ++C+  +   A  L  DM  KG 
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +P+ V F  L+    RK    + I++L  M +    P
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN+++YN ++ G CKE  +D+A E   +M      P++VTYN+++   C      +A 
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  ++  +G    ++T+N ++D L K  K  +A +LLD M    ++PD       + Y 
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDT------ITYS 488

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GL + GK+  A +      R G+ PN VT+N  +  LC   Q D+A D  + M  +
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR 548

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           G  PN   +T L+     +    + +ELL  +  + +M  +S
Sbjct: 549 GCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSS 590



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 10/177 (5%)

Query: 69  EAEYLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           E  + F+E M+  G   D++    ++   C+  K  +A ++L+++   G  PD      +
Sbjct: 119 EEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD------V 172

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + Y  +I G CK G++ NA  +   L R  + P+VVTYN  + +LC+  ++ +A ++   
Sbjct: 173 ITYNVMISGYCKAGEINNALSV---LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M  +   P+ + +T L+ +  R +     ++LL  M  R   P     +++V+ + K
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 64/112 (57%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+T+TY++++ GL +EG VD+A + F + +   I PN VT+NS++ G C +   + A  
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAID 540

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
             + M++RG + +  ++ ++++ L       EA  LL+ +   G+   +  E
Sbjct: 541 FLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAE 592



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 97/205 (47%), Gaps = 14/205 (6%)

Query: 41  QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           +++   +N     + +L  G  Y+N      Y     ++     + V  N  + ++ +  
Sbjct: 62  KVESSGLNGRAQKFETLSSG--YSNSNGNGHY---SSVNSSFALEDVESNNHLRQMVRTG 116

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           +++E  + L+ M+  G  PD      I+    LI G C++GK + A ++ + L  +G +P
Sbjct: 117 ELEEGFKFLENMVYHGNVPD------IIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVP 170

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +V+TYN+ I   C   +++ A  +   M    V+P+ V + T++ S     +  + +E+L
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 221 RSMDKRNVMPYASILSIIVDLLVKN 245
             M +R+  P     +I+++   ++
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRD 252


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 130/227 (57%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY+ +ID LCK+  +D A  L  +MK +NI PN+ TYNSLI G C      + + 
Sbjct: 200 KPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKT 259

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM++  +  +V TF++++D LCK  K+++A  ++  MI+ GV PD      I+ Y  
Sbjct: 260 LLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPD------IITYSA 313

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DG C  G++  AR +   L   G+ PN+ +Y+I I+  C  + + KA  LF ++  KG
Sbjct: 314 IMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKG 373

Query: 193 VAPNCVIFTTLMPSFI---RKNETSKVI-ELLRSMDKRNVMPYASIL 235
           + P+ V ++T++   I   R  +  K+  E+LR     ++  ++++L
Sbjct: 374 LKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLL 420



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 140/270 (51%), Gaps = 29/270 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY+ I+DG C  G VD+A+ +F  ++D+ I PN+ +Y+ LI+G+C   +  +A  
Sbjct: 305 EPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQ 364

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA----------- 121
           LF E+  +GL+ D VT++ I+  L +  ++ +A ++ D M++ G  PD            
Sbjct: 365 LFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYF 424

Query: 122 -----------FCEI-------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                      F ++       NI  Y  +I+GLCK  +++ A  + + L   GL+P+V 
Sbjct: 425 KYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVR 484

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN+ I   C +   D+   +   ME  G   N + +  +M  F R N+ S+++  ++ M
Sbjct: 485 TYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEM 544

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLNSIP 253
             R     A+   +++++L +N   ++ IP
Sbjct: 545 AGRGFSFDATTTGVLINVLKENPSIVDMIP 574



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 129/233 (55%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN++IDGLCK G  +K K L  +M + NINPNV T++ LI G C      +A+ +
Sbjct: 236 PNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEV 295

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+++G++ D++T++ IMD  C   ++D A R+ +++   G++P      NI +Y  L
Sbjct: 296 MRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKP------NIFSYSIL 349

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK   L  A +L   +++ GL P+ VTY+  +H L    ++  A  +F +M   G 
Sbjct: 350 INGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGP 409

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+  + +TL+  + +     + + L   +++       S  +++++ L KN+
Sbjct: 410 TPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKND 462



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 5/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + ++ +   +           LF +M+   I  +    N + + +C  +  + A  +
Sbjct: 60  PSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSV 119

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
               +  G+  +VVTFN ++  L    K+ +A  L   +++     +  CE N V YG +
Sbjct: 120 LPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVR-----EKICEPNEVMYGTV 174

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GL K G  +    L + + +    P+V TY+I I ALC D  +D A +L  +M+ K +
Sbjct: 175 MNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNI 234

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN   + +L+    +  +  KV  LL  M   N+ P     SI++D L K
Sbjct: 235 PPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCK 285



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 42/215 (19%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A  LF +M      P+V+ ++ L          +    LF EM   G+       N+
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           + +  C   ++D A  +L + ++ G+    F                             
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGI---PF----------------------------- 130

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA-PNCVIFTTLMPSFIRK 210
                    NVVT+N  +  L  + ++  A  LF  +  + +  PN V++ T+M    ++
Sbjct: 131 ---------NVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKR 181

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             T K + LLR M++ N  P     SI++D L K+
Sbjct: 182 GHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKD 216


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 12/231 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  PN VTYN+I+  LCK   +DKA+ +  QM D +I P+ VTY ++IHG+       
Sbjct: 302 GVV--PNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWK 359

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  +F EM   GL  D+VTFN +MD LCK+++  EA  +   +   G +PD      I+
Sbjct: 360 EAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPD------II 413

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  L+ G    G+  +   L  S+T  G++ +   +NI I+A      MD+A  +F +M
Sbjct: 414 SYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEM 473

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
             +GV+PN V + T++ +  R    +  +E L  M     K N + Y S++
Sbjct: 474 RGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLI 524



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 125/250 (50%), Gaps = 7/250 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G    PN VTY T+I  LC+ G +  A E   QM    + PN V Y+SLI GFC   D  
Sbjct: 475 GQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLI 534

Query: 69  EAEYLFIEMMDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +A+ L  EMMD+G+ + ++  F+ I+  LC   ++  A  + +L+I  G RPD F     
Sbjct: 535 KAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIF----- 589

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             +  LIDG C +GK+  A  +  ++  AG  P+VVTY+  I+      ++D    LF +
Sbjct: 590 -TFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFRE 648

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M  K V P  V ++ ++    R   TS   ++   M +       S  +II+  L +N  
Sbjct: 649 MLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNC 708

Query: 248 SLNSIPQFNR 257
           +  +I  F++
Sbjct: 709 TDEAITLFHK 718



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 128/234 (54%), Gaps = 7/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C P+  +YNT+I  LC      +A ++ L+M K +  +P+VV+Y  +IHG     + ++A
Sbjct: 232 CVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKA 291

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF EM+ +G+  +VVT+N I+  LCK R MD+A  +L  M    ++PD       V Y
Sbjct: 292 CNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDE------VTY 345

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I G   +G+ K A ++ + +TR GL+P++VT+N  + +LC  ++  +A ++F  +  
Sbjct: 346 TAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIAT 405

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           KG  P+ + ++ L+  +  +     +  L  SM    ++  +   +I+++   K
Sbjct: 406 KGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAK 459



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 10/231 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y  +I GL  EG + KA  LF +M  + + PNVVTYNS++H  C A   ++AE
Sbjct: 268 CSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAE 327

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M D  +Q D VT+  ++       +  EA ++   M + G+ PD      IV + 
Sbjct: 328 LVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPD------IVTFN 381

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK  + K A E+  S+   G  P++++Y+I +H    + +    ++LF  M   
Sbjct: 382 SLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDN 441

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           G+  +   F  L+ +  ++    + + +   M  + V P    YA++++ +
Sbjct: 442 GIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAAL 492



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 121/236 (51%), Gaps = 7/236 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+N++IDG C  G +DKA  +   M      P+VVTY++LI+G+  +   ++   
Sbjct: 585 RPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLI 644

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ + ++   VT+++++D L +  +   A ++   MI+ G        ++I  Y  
Sbjct: 645 LFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGT------AMSISTYTI 698

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLC+      A  L   L    L   +   N  IHAL   ++ ++AHDLF  +   G
Sbjct: 699 ILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASG 758

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV-KNEI 247
           + PN   +  ++ + +++    +   +  SM+K    P + +L+ I+ +L+ K EI
Sbjct: 759 LVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEI 814



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 121/248 (48%), Gaps = 13/248 (5%)

Query: 5   NREFGVV-------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL 57
           ++ FGV+        +P+ VTY+T+I+G  K G +D    LF +M  + + P  VTY+ +
Sbjct: 605 DKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLV 664

Query: 58  IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           + G   A   + A+ +F EM++ G    + T+ +I+  LC+N   DEA  L   +    +
Sbjct: 665 LDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNL 724

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
           +        I     +I  L K+ + + A +L  S++ +GL+PN  TY + I  L  +  
Sbjct: 725 K------FEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGS 778

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +++A  +F  ME  G AP+  +   ++   ++K E  K    +  +D   +   AS  S+
Sbjct: 779 VEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSL 838

Query: 238 IVDLLVKN 245
           ++ L    
Sbjct: 839 LISLFASK 846



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 9/253 (3%)

Query: 7   EFGVVCKPNTV-TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           E G    P TV TY  ++D  C+    D     F ++    +  + +  N+ +   CYA 
Sbjct: 155 EAGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAK 214

Query: 66  DGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFC 123
             +EA   L   M + G   D  ++N ++  LC   +  EA  +L  M +G G  PD   
Sbjct: 215 RTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPD--- 271

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
              +V+Y  +I GL   G++  A  L   + + G++PNVVTYN  +HALC    MDKA  
Sbjct: 272 ---VVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAEL 328

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +   M    + P+ V +T ++  +       +  ++ + M +  ++P     + ++D L 
Sbjct: 329 VLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLC 388

Query: 244 KNEISLNSIPQFN 256
           K++ S  +   F+
Sbjct: 389 KHKRSKEAAEIFH 401


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  II  LCK   VD+A  LF +M+ + I P+ VTY+SLI G C +   + A  L
Sbjct: 308 PDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWEL 367

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M  RG  +DV+T+   +  LCKN ++D+A  L+  +   G++P      NI  Y  L
Sbjct: 368 LDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQP------NINTYNIL 421

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G+ +NA+ + Q L   G    V TYNI I+ LC +   D+A  L   ME  G 
Sbjct: 422 IDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGC 481

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            P+ V + T++ +  + +E  K  +LLR M  R ++
Sbjct: 482 TPDVVTYETIIRALFKNDENHKAEKLLREMIARGLL 517



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 129/253 (50%), Gaps = 23/253 (9%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G +   N V Y+TIID LCKE  V +A EL+ QM  + ++P+VVT+++LI+GFC      
Sbjct: 181 GKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFK 240

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI--------------- 113
           EA  LF EM+   +  DV TFN+++D LCK     E   +L +M+               
Sbjct: 241 EAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNI 300

Query: 114 --QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
             +  V PD      + +Y  +I  LCKI  +  A  L   +   G+ P+ VTY+  I  
Sbjct: 301 IGKRRVTPD------VHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDG 354

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
           LC  E++  A +L   M  +G   + + +T+ + +  + ++  K + L++ +  + + P 
Sbjct: 355 LCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPN 414

Query: 232 ASILSIIVDLLVK 244
            +  +I++D L K
Sbjct: 415 INTYNILIDGLCK 427



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 8/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDK--AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           P+ + +N I+  L K    +   A  L+ +++   I P++VT+N++I+ +C+  + + A 
Sbjct: 44  PSIIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAF 103

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +++  G   D +T   ++  LC N K+ EA    D +I  G R      +N V+YG
Sbjct: 104 SVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFR------LNEVSYG 157

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK+G+ + A ++ + +    +  NVV Y+  I +LC ++ + +A++L+  M VK
Sbjct: 158 ILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVK 217

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V+P+ V F+ L+  F    +  +   L   M   N+ P     +I+VD L K
Sbjct: 218 KVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCK 270



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 23/250 (9%)

Query: 14  PNTVTYNTIIDGLCKEGF-----------------VDKAKELFLQMKDENINPNVVTYNS 56
           P+  T+N ++D LCKEG                  V+KAK +F  +    + P+V +Y  
Sbjct: 256 PDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTI 315

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           +I   C     +EA  LF EM  +G+  D VT++ ++D LCK+ ++  A  LLD M   G
Sbjct: 316 IIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARG 375

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
              D      ++ Y   +  LCK  ++  A  L + +   G+ PN+ TYNI I  LC + 
Sbjct: 376 QPAD------VITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEG 429

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           + + A  +F D+ +KG       +  ++     +    + + LL  M+     P      
Sbjct: 430 RFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYE 489

Query: 237 IIVDLLVKNE 246
            I+  L KN+
Sbjct: 490 TIIRALFKND 499



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 23/263 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+NT+I+  C  G +D A  +  ++     +P+ +T  +LI G C     +EA + 
Sbjct: 81  PSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHF 140

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ RG + + V++ ++++ LCK  +   A ++L   I G          N+V Y  +
Sbjct: 141 HDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLR-KIDG-----KLVNTNVVMYSTI 194

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK   +  A EL   +    + P+VVT++  I+  C   Q  +A  LF +M +  +
Sbjct: 195 IDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNI 254

Query: 194 APNCVIFTTLMPSFIRK-----------------NETSKVIELLRSMDKRNVMPYASILS 236
            P+   F  L+ +  ++                 N+ +K   +   + KR V P     +
Sbjct: 255 NPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYT 314

Query: 237 IIVDLLVKNEISLNSIPQFNRQK 259
           II+  L K ++   ++  FN  +
Sbjct: 315 IIIKRLCKIKMVDEALSLFNEMR 337



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 6/150 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            + +TY + +  LCK   VDKA  L  ++KD+ I PN+ TYN LI G C       A+ +
Sbjct: 378 ADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVI 437

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +++ +G +  V T+N++++ LC     DEA  LL+ M   G  PD      +V Y  +
Sbjct: 438 FQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPD------VVTYETI 491

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           I  L K  +   A +L + +   GL+   V
Sbjct: 492 IRALFKNDENHKAEKLLREMIARGLLEEKV 521



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 59/105 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TYN +IDGLCKEG  + A+ +F  +  +     V TYN +I+G C     +EA  
Sbjct: 412 QPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMT 471

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           L  +M D G   DVVT+  I+  L KN +  +A +LL  MI  G+
Sbjct: 472 LLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREMIARGL 516


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 126/235 (53%), Gaps = 11/235 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ ++YN +I+G CK   +D+AK++F +M    + PN  TYN+L+ GF       +  
Sbjct: 76  CIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGF-----WKQKI 130

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M  +G   D+VT+++ +  L K   +D+A  L   M    + PD      +V Y 
Sbjct: 131 QLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPD------LVIYN 184

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID +CK GKL++AREL   L   GL+P+V ++   I  LC +  +D+A+  F  ME  
Sbjct: 185 ILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERD 244

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  P+C  +  ++  F++ N  S+  +L + M  R     A   ++  DLL K++
Sbjct: 245 GCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADALTRTLAADLLSKDD 299



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 134/256 (52%), Gaps = 24/256 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N ++D LCK+G + +A+ +   M ++ + PN VTY+SL++G+   N   EA  +
Sbjct: 8   PDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKV 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
           F  M+ RG   DV+++N++++  CK +++DEA ++ D M   G+ P+             
Sbjct: 68  FNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGFWK 127

Query: 123 -------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
                        C  ++V Y   + GL K G L  A EL + +    L P++V YNI I
Sbjct: 128 QKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILI 187

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            A+C   +++ A +LFL + VKG+ P+   +T+++    R+    +  +  R M++    
Sbjct: 188 DAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCP 247

Query: 230 PYASILSIIVDLLVKN 245
           P     ++IV   ++N
Sbjct: 248 PDCCSYNVIVRGFLQN 263



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 46/164 (28%)

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT------------ 164
           + PDA      V +  L+D LCK GK+  A+ + +++   G+ PN VT            
Sbjct: 6   IMPDA------VTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQN 59

Query: 165 -----------------------YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
                                  YNI I+  C  +++D+A  +F +M  +G+ PN   + 
Sbjct: 60  RVFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYN 119

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           TL+  F ++      I+L + M  +   P     SI +  L K 
Sbjct: 120 TLLGGFWKQK-----IQLFKDMHAQGCSPDLVTYSIFLHGLSKQ 158


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 115/211 (54%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YNTIIDGLCK   VD A +L  +M+ + I P+ VTYNSLI G C +   ++A  
Sbjct: 183 EPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATR 242

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M  R +  DV TFN ++D   K  ++ EA  L + MI+  + PD      IV Y  
Sbjct: 243 MVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPD------IVTYSL 296

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC   +L  A ++   +   G  P+VVTY+I I+  C  ++++    LF +M  +G
Sbjct: 297 LIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           V  N V +T L+  + R  + +   E+ + M
Sbjct: 357 VVRNTVTYTVLIQGYCRAGKLNVAEEIFKWM 387



 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 128/217 (58%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N +ID   KEG + +A+EL+ +M   +++P++VTY+ LI+G C  +  +EAE +
Sbjct: 254 PDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQM 313

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   DVVT++++++  CK++K++   +L   M Q GV        N V Y  L
Sbjct: 314 FGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR------NTVTYTVL 367

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ GKL  A E+ + +   G+ PN++TYN+ +H LC++ +++KA  +  DM+  G+
Sbjct: 368 IQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGM 427

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             + V +  ++    +  E +   +L  S++ + + P
Sbjct: 428 DADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTP 464



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 118/217 (54%), Gaps = 6/217 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+ ++++G C+   +  A  +F +M +    PNVV YN++I G C +   + A  
Sbjct: 148 EPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALD 207

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M   G++ D VT+N ++  LC + + D+ATR++  M +  + PD F       +  
Sbjct: 208 LLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVF------TFNA 261

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G++  A EL + + R  L P++VTY++ I+ LC   ++D+A  +F  M  KG
Sbjct: 262 LIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKG 321

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P+ V ++ L+  + +  +    ++L   M +R V+
Sbjct: 322 CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV 358



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 6/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY+ +I+G CK   V+   +LF +M    +  N VTY  LI G+C A   N AE
Sbjct: 322 CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAE 381

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M+  G+  +++T+NV++  LC N K+++A  +L  M + G+  D      IV Y 
Sbjct: 382 EIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDAD------IVTYN 435

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+CK G++ +A +L  SL   GL P++ TY   +  L       +A  LF  M+  
Sbjct: 436 IIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKED 495

Query: 192 GVAPN 196
           G+ PN
Sbjct: 496 GILPN 500



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   ++ ++  + K    D    L+ QM+   I  N+ T N L++ FC  +  + A   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM  G + D+VTF  +++  C+  ++ +A  + D M++ G  P      N+V Y  +
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEP------NVVIYNTI 192

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  ++ NA +L   +   G+ P+ VTYN  I  LCN  + D A  +   M  + +
Sbjct: 193 IDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREI 252

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+   F  L+ + +++   S+  EL   M +R++ P     S+++
Sbjct: 253 YPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLI 298



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 6/213 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D + +LF  M      P++  ++ L+         +   YL+ +M   G+  ++ T N+
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C+  ++  A   L  M++ G  PD      IV +G L++G C+  ++ +A  +  
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMMKLGHEPD------IVTFGSLLNGFCRGDRIYDALYMFD 175

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  PNVV YN  I  LC  +Q+D A DL   MEV G+ P+ V + +L+       
Sbjct: 176 RMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSG 235

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
                  ++  M KR + P     + ++D  VK
Sbjct: 236 RWDDATRMVSCMTKREIYPDVFTFNALIDACVK 268



 Score = 45.1 bits (105), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 79/202 (39%), Gaps = 21/202 (10%)

Query: 58  IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           I G C++         + EM+  G+               +  K+D++  L   M+Q   
Sbjct: 33  ICGLCFSRRAYSGGSDYREMLRNGI---------------RYMKLDDSLDLFFHMVQCRP 77

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
            P      +I  +  L+  + K+ K      L + +   G+  N+ T NI ++  C   Q
Sbjct: 78  LP------SIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQ 131

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +  A      M   G  P+ V F +L+  F R +     + +   M +    P   I + 
Sbjct: 132 LSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNT 191

Query: 238 IVDLLVKNEISLNSIPQFNRQK 259
           I+D L K++   N++   NR +
Sbjct: 192 IIDGLCKSKQVDNALDLLNRME 213


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 10/235 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K +  T+N +I+ LCKEG + KAK+    M+   + PN+VTYN+++HG+C +   
Sbjct: 213 FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A+ +   M  + ++ D  T+  ++  +CK  +++EA+++ + M+Q G+RP A      
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSA------ 326

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LIDG C  G L  A      + + G+ P + TYN  IHAL  +++ D+A  +  +
Sbjct: 327 VIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASILSII 238
           ++ KG++P+ + +  L+  + R     K      E+L S  K     Y S+L ++
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYN++I  L  E   D+A+ +  +++++ I+P+ +TYN LI+G+C   +  +A  L
Sbjct: 359 PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G++    T+  ++  L K  +M EA  L   +   GV PD      ++ +  L
Sbjct: 419 HDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPD------VIMFNAL 472

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C    +K A EL + + R  + P+ VT+N  +   C + ++++A +LF +M+ +G+
Sbjct: 473 IDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGI 532

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+ + F TL+  + R+ +      +   M      P     + +V  L KN+
Sbjct: 533 KPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQ 585



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 108/200 (54%), Gaps = 8/200 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TY +++  L K+  + +A +LF ++  E + P+V+ +N+LI G C +N   +  +
Sbjct: 428 KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHC-SNSNVKGAF 486

Query: 73  LFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             ++ MDR  +  D VTFN IM   C+  K++EA  L D M + G++PD       +++ 
Sbjct: 487 ELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDH------ISFN 540

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G  + G +K+A  +   +   G  P V+TYN  +  LC +++ D A +L  +M  K
Sbjct: 541 TLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSK 600

Query: 192 GVAPNCVIFTTLMPSFIRKN 211
           G+ P+   + TL+    + N
Sbjct: 601 GMTPDDTTYFTLIEGIAKVN 620



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +++ ++ +I   C     D+A E F  MK++ + P + T NSL+  F   N    A  L+
Sbjct: 150 SSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM    ++S V TFN++++ LCK  K+ +A   +  M   GV+P      NIV Y  ++
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKP------NIVTYNTIV 263

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C  G+++ A  +  ++ R  + P+  TY   I  +C   ++++A  +F +M  KG+ 
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           P+ VI+ TL+  F  K            M K+ + P  S  + ++  L
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +I+G C+     KA  L  +M    I P   TY SL+H     N   EA+ L
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDL 453

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F ++   G+  DV+ FN ++D  C N  +  A  LL  M +  V PD       V +  +
Sbjct: 454 FKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE------VTFNTI 507

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G C+ GK++ AREL   + R G+ P+ +++N  I        +  A  +  +M   G 
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGF 567

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P  + +  L+    +  E     ELL+ M  + + P
Sbjct: 568 NPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 35/126 (27%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMK------------------------------ 43
           P+ VT+NTI+ G C+EG V++A+ELF +MK                              
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558

Query: 44  -----DENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                D   NP V+TYN+L+ G C   +G+ AE L  EM+ +G+  D  T+  +++ + K
Sbjct: 559 RNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618

Query: 99  NRKMDE 104
               DE
Sbjct: 619 VNIPDE 624


>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
 gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
          Length = 564

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY T IDGLCK G +D+A++++ +M D+ + PN   Y SL+  +C A D   A  ++
Sbjct: 289 DAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVY 348

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +GL+   V+ N+++   C + ++DEA  + + M++ G+      E +++ Y  LI
Sbjct: 349 DEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGI------EHDVITYNILI 402

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLCK G+L  A ++ + L  +GL P+V T+   I  +C + Q+D A +L   M  KG+ 
Sbjct: 403 QGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLKVMHAKGLE 462

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           P   I  +++  F +       +  L  M K+N+ P     + +V+LL
Sbjct: 463 PLARINDSIINGFCKARRPEDGMAWLAGMLKKNLKPREHTFNSLVELL 510



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 29/225 (12%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P+ V Y  +IHG      G+EA  +F E+  RG   D VT+   +D LCK   +DEA ++
Sbjct: 253 PDTVIYQRIIHGLFAHKMGSEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQI 312

Query: 109 LDLMIQGGVRPDAFCEINIVAYGC-----------------------------LIDGLCK 139
            + M+  G+ P+ +   ++VAY C                             L+ G C 
Sbjct: 313 WNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCT 372

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G++  A  + + + + G+  +V+TYNI I  LC   ++ +A  ++  +   G+ P+   
Sbjct: 373 HGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVST 432

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           FT L+ +   + +    +ELL+ M  + + P A I   I++   K
Sbjct: 433 FTPLIDTMCEEGQVDAAVELLKVMHAKGLEPLARINDSIINGFCK 477



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 6/169 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +TV+ N ++ G C  G VD+A  +F +M  + I  +V+TYN LI G C A   +EA  
Sbjct: 357 KESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQ 416

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +++  GL+  V TF  ++D +C+  ++D A  LL +M   G+ P A   IN      
Sbjct: 417 VYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLKVMHAKGLEPLA--RIN----DS 470

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           +I+G CK  + ++       + +  L P   T+N  +  L +  ++D A
Sbjct: 471 IINGFCKARRPEDGMAWLAGMLKKNLKPREHTFNSLVELLSSSGRVDDA 519



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 7/137 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+  +ID +C+EG VD A EL   M  + + P     +S+I+GFC A    +   
Sbjct: 427 EPSVSTFTPLIDTMCEEGQVDAAVELLKVMHAKGLEPLARINDSIINGFCKARRPEDGMA 486

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               M+ + L+    TFN +++ L  + ++D+A  +L+ M + G       E+  +A   
Sbjct: 487 WLAGMLKKNLKPREHTFNSLVELLSSSGRVDDALLVLNTMFKIGH------ELGSLACTM 540

Query: 133 LIDGLCKIGKLKNAREL 149
           L++ LC  GKL  + EL
Sbjct: 541 LVEQLC-TGKLCYSHEL 556



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 43/234 (18%)

Query: 45  ENINPNVVTYNSLIHGF-CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD 103
             + P +     L+  F   AN G  +E L + M+  G   D V +  I+  L  ++   
Sbjct: 214 RGVPPQLDAVADLVAAFSAAANFGKVSETLHL-MIAAGSVPDTVIYQRIIHGLFAHKMGS 272

Query: 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           EA R+ + +   G   DA      V Y   IDGLCK+G +  AR++   +   G+ PN  
Sbjct: 273 EALRVFNEIKLRGYNVDA------VTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEY 326

Query: 164 TY-----------------------------------NITIHALCNDEQMDKAHDLFLDM 188
            Y                                   NI +   C   ++D+A  +F +M
Sbjct: 327 AYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEM 386

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             KG+  + + +  L+    +    S+ I++   +    + P  S  + ++D +
Sbjct: 387 VKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTM 440


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 10/235 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K +  T+N +I+ LCKEG + KAK+    M+   + PN+VTYN+++HG+C +   
Sbjct: 213 FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRV 272

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A+ +   M  + ++ D  T+  ++  +CK  +++EA+++ + M+Q G+RP A      
Sbjct: 273 EAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSA------ 326

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LIDG C  G L  A      + + G+ P + TYN  IHAL  +++ D+A  +  +
Sbjct: 327 VIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASILSII 238
           ++ KG++P+ + +  L+  + R     K      E+L S  K     Y S+L ++
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYN++I  L  E   D+A+ +  +++++ I+P+ +TYN LI+G+C   +  +A  L
Sbjct: 359 PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G++    T+  ++  L K  +M EA  L   +   GV PDA      + +  L
Sbjct: 419 HDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDA------IMFNAL 472

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C    +K A EL + + R  + P+ VT+N  +   C + ++++A +LF +M+ +G+
Sbjct: 473 IDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGI 532

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+ + F TL+  + R+ +      +   M      P     + +V  L KN+
Sbjct: 533 KPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQ 585



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +++ ++ +I   C     D+A E F  MK++ + P + T NSL+  F   N    A  L+
Sbjct: 150 SSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM    ++S V TFN++++ LCK  K+ +A   +  M   GV+P      NIV Y  ++
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKP------NIVTYNTIV 263

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C  G+++ A  +  ++ R  + P+  TY   I  +C   ++++A  +F +M  KG+ 
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           P+ VI+ TL+  F  K            M K+ + P  S  + ++  L
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 107/200 (53%), Gaps = 8/200 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TY +++  L K+  + +A +LF ++  E + P+ + +N+LI G C +N   +  +
Sbjct: 428 KPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHC-SNSNVKGAF 486

Query: 73  LFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             ++ MDR  +  D VTFN IM   C+  K++EA  L D M + G++PD       +++ 
Sbjct: 487 ELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDH------ISFN 540

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G  + G +K+A  +   +   G  P V+TYN  +  LC +++ D A +L  +M  K
Sbjct: 541 TLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSK 600

Query: 192 GVAPNCVIFTTLMPSFIRKN 211
           G+ P+   + TL+    + N
Sbjct: 601 GMTPDDTTYFTLIEGIAKVN 620



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +I+G C+     KA  L  +M    I P   TY SL+H     N   EA+ L
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDL 453

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F ++   G+  D + FN ++D  C N  +  A  LL  M +  V PD       V +  +
Sbjct: 454 FKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE------VTFNTI 507

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G C+ GK++ AREL   + R G+ P+ +++N  I        +  A  +  +M   G 
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGF 567

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P  + +  L+    +  E     ELL+ M  + + P
Sbjct: 568 NPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 35/126 (27%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMK------------------------------ 43
           P+ VT+NTI+ G C+EG V++A+ELF +MK                              
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558

Query: 44  -----DENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                D   NP V+TYN+L+ G C   +G+ AE L  EM+ +G+  D  T+  +++ + K
Sbjct: 559 RNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618

Query: 99  NRKMDE 104
               DE
Sbjct: 619 VNIPDE 624



 Score = 36.6 bits (83), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           L+ S  R G   ++V ++  I + C+  + D+A + F  M+ KGV P      +L+  F+
Sbjct: 139 LAASRDRLGFKSSIV-FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFL 197

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + N T     L   M +  +       +I++++L K
Sbjct: 198 KLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCK 233


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN+++ GLC++G +  A ++  +M +E  +P++ TYN +I+G C   + ++A  
Sbjct: 382 KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAV 441

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  + + +G   DV TFN ++D  CK  K+D A +L++ M   G+ PD      ++ Y  
Sbjct: 442 VMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPD------VITYNS 495

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK GK K   E  + +   G  PN +TYNI I   C   Q+++A  + + M   G
Sbjct: 496 VLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDG 555

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V F TL+  F R  +      L + +D++     A   +I++
Sbjct: 556 LVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILI 602



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+NT+IDG CK   +D A +L  +M    I P+V+TYNS+++G C A    E    
Sbjct: 453 PDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNET 512

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G + + +T+N++++  CK  +++EA+ ++  M Q G+ PDA      V++  L
Sbjct: 513 FEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDA------VSFNTL 566

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G L  A  L Q L   G      T+NI I A  +   M  A  +F +M  KG 
Sbjct: 567 IHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGY 626

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+   +  L+    +     +    L  M  +  +P  +    +++LL  N 
Sbjct: 627 KPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNH 679



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 10/243 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYNTIIDG CK G + +A EL      +   P+ VTY SLI+G C   D   A 
Sbjct: 311 CIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERAL 370

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF E   + L+ D+V +N ++  LC+   +  A ++++ M++ G  PD      I  Y 
Sbjct: 371 ELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPD------IWTYN 424

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GLCK+G + +A  +       G +P+V T+N  I   C   ++D A  L   M   
Sbjct: 425 IIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTY 484

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+AP+ + + +++    +  +  +V E    M  +   P A    I  ++L++N   +N 
Sbjct: 485 GIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNA----ITYNILIENFCKINQ 540

Query: 252 IPQ 254
           + +
Sbjct: 541 LEE 543



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 123/267 (46%), Gaps = 40/267 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C      Y T++ GL   G    A+ LF +M   ++ P+V T+N+++H  C   D  E+ 
Sbjct: 172 CDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESG 231

Query: 72  YLFIEMMDRGLQS----------------------------------DVVTFNVIMDELC 97
            L  +++ RG+ +                                  DVVT+N +M  LC
Sbjct: 232 ALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLC 291

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K+ K+ EA + L  M+  G  PD F       Y  +IDG CK G L+ A EL +     G
Sbjct: 292 KDSKVQEAAQYLGRMMNQGCIPDDF------TYNTIIDGYCKSGMLQEATELLKDAVFKG 345

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
            +P+ VTY   I+ LC +  +++A +LF + + K + P+ V++ +L+    R+      +
Sbjct: 346 FVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHAL 405

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
           +++  M +    P     +II++ L K
Sbjct: 406 QVMNEMVEEGCHPDIWTYNIIINGLCK 432



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 10/233 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
             G    P+ VTYNT++ GLCK+  V +A +   +M ++   P+  TYN++I G+C +  
Sbjct: 271 RMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGM 330

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA  L  + + +G   D VT+  +++ LC    ++ A  L +      ++PD      
Sbjct: 331 LQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPD------ 384

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  L+ GLC+ G + +A ++   +   G  P++ TYNI I+ LC    +  A  +  
Sbjct: 385 LVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMN 444

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           D  VKG  P+   F TL+  + ++ +    ++L+  M    + P    Y S+L
Sbjct: 445 DAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVL 497



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 6/187 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN +TYN +I+  CK   +++A  + ++M  + + P+ V++N+LIHGFC   D + A 
Sbjct: 521 CRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAY 580

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF ++ ++G  +   TFN+++        M  A ++   MI  G +PD +       Y 
Sbjct: 581 LLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLY------TYR 634

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DGLCK   +  A      +   G +P++ T+   ++ L  + ++ +A  +   M   
Sbjct: 635 ILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRM 694

Query: 192 GVAPNCV 198
           GV P  V
Sbjct: 695 GVVPEVV 701



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 124/309 (40%), Gaps = 63/309 (20%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC-------- 62
            C P    YN I+D L    + D+A +++++M    + P+  T+   +  FC        
Sbjct: 101 ACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVA 160

Query: 63  --------------------------YAN-DGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95
                                     YA+  G  A +LF EM+ R +  DV TFN ++  
Sbjct: 161 LRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHA 220

Query: 96  LCKNRKMDEATRLLDLMIQGGV----------------------------RPDAFCEINI 127
           LC+   + E+  LL  +++ G+                            R  A+   ++
Sbjct: 221 LCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDV 280

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  L+ GLCK  K++ A +    +   G +P+  TYN  I   C    + +A +L  D
Sbjct: 281 VTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKD 340

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              KG  P+ V + +L+     + +  + +EL      +++ P   + + +V  L +  +
Sbjct: 341 AVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGL 400

Query: 248 SLNSIPQFN 256
            L+++   N
Sbjct: 401 ILHALQVMN 409



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
           S +  +  ++ EL    ++D+    L    +  + PD+   + + +    I    + G+L
Sbjct: 33  STIPAYRALIRELVSAGRLDDVDAAL-ASARSHLAPDSLQPLYVAS----IQAYARAGRL 87

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
           + A +  + +      P    YN  + AL N    D+AH +++ M   GVAP+    T  
Sbjct: 88  RAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVR 147

Query: 204 MPSFIRKNETSKVIELLRSMDKRN 227
           + SF         + LLRS+ +R 
Sbjct: 148 LKSFCLTGRPHVALRLLRSLSERG 171


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 147/275 (53%), Gaps = 33/275 (12%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + + N V YNT+IDG+ K+  V+ A +L+ +M  + I+P+VVTY++LI GF       
Sbjct: 201 GKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLK 260

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------- 119
           +A  LF +M+   ++ DV TFN+++D  CK  ++ +A  +LD+M+   ++P         
Sbjct: 261 DAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLV 320

Query: 120 DAFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           D FC                    + N+V Y  L+DG C + ++  A+++  ++++ G+ 
Sbjct: 321 DGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVT 380

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            NV +YNI I+  C  +++DKA  LF++M  K + P+ V + +L+    +  + S   +L
Sbjct: 381 ANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQL 440

Query: 220 LRSMDKR----NVMPYASILSIIVDLLVKNEISLN 250
           +  M  R    N++ Y SIL+ ++  L    I  N
Sbjct: 441 VNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPN 475



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 6/222 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N I+  L K         L  QM+ E INPN VT+N LI+ FC       A  +  +++
Sbjct: 71  FNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKIL 130

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G + D++T N  +   C   ++ +A    D ++  G   D       V+YG LI+GLC
Sbjct: 131 KMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQ------VSYGTLINGLC 184

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K+G+ + A +L + +    +  N V YN  I  +  D+ ++ A DL+ +M  K ++P+ V
Sbjct: 185 KVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVV 244

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            ++ L+  F    +    I+L   M   N+ P     +I+VD
Sbjct: 245 TYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVD 286



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T NT I G C +G + +A     ++     + + V+Y +LI+G C   +   A  
Sbjct: 135 EPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQ 194

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   +  + +Q + V +N ++D + K++ +++A  L   M+   + PD      +V Y  
Sbjct: 195 LLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPD------VVTYSA 248

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G   +GKLK+A +L   +    + P+V T+NI +   C + ++ KA ++   M ++ 
Sbjct: 249 LIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQD 308

Query: 193 VAPNCVIFTTLMPSFI--RKNETSKVI--ELLRSMDKRNVMPYASIL 235
           + PN   F TL+  F   RK +  K +   +++   K NV+ Y S++
Sbjct: 309 IKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLM 355



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 8/234 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+N +I+  C+ G +  A  +  ++      P+++T N+ I GFC     ++A   
Sbjct: 101 PNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNF 160

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA-FCEINIVAYGC 132
             +++  G   D V++  +++ LCK  +   A +LL        R D    ++N V Y  
Sbjct: 161 HDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLR-------RVDGKLVQLNAVMYNT 213

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG+ K   + +A +L   +    + P+VVTY+  I       ++  A DLF  M ++ 
Sbjct: 214 VIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILEN 273

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + P+   F  L+  F ++    K   +L  M  +++ P  S  + +VD   K+ 
Sbjct: 274 IKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDR 327



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 7/200 (3%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           +  N + Y+S+   F ++ND + A  LF  ++ +        FN I+  L K++      
Sbjct: 30  LQKNFIPYSSISTTF-HSNDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVL 88

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
            L   M   G+ P      N V +  LI+  C++G +  A  +   + + G  P+++T N
Sbjct: 89  SLSQQMEFEGINP------NFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLN 142

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             I   C   Q+ +A +    +   G   + V + TL+    +  ET   ++LLR +D +
Sbjct: 143 TFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGK 202

Query: 227 NVMPYASILSIIVDLLVKNE 246
            V   A + + ++D + K++
Sbjct: 203 LVQLNAVMYNTVIDGMSKDK 222


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 117/216 (54%), Gaps = 6/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +   Y T++ G C +G +  A+  F +M+ + +  + VTY +LI+G C A +  EAE + 
Sbjct: 363 DEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVL 422

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ R L  D VT+ V++D  CK  KM EA ++ + M+Q GV P      N+V Y  L 
Sbjct: 423 QEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAP------NVVTYTALS 476

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK G ++ A EL   ++  GL  N  TYN  I+ LC    +D+A     DM+  G+ 
Sbjct: 477 DGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLK 536

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           P+   +TTL+ +  +  E  +  +LL+ M    + P
Sbjct: 537 PDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKP 572



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY  ++DG CK G + +A ++   M    + PNVVTY +L  G C   D   A  L 
Sbjct: 433 DEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELL 492

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM ++GL+ +  T+N +++ LCK   +D+A R +  M   G++PD +       Y  LI
Sbjct: 493 HEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVY------TYTTLI 546

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D LCK G+L  A +L Q +   G+ P +VTYN+ ++  C   +++    L   M  K + 
Sbjct: 547 DALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIH 606

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           PN   + +LM  +   N      E+ + M  RNV P  +  +I++
Sbjct: 607 PNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILI 651



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTY T+I+GLC+ G + +A+++  +M    ++ + VTY  L+ G+C      EA  +   
Sbjct: 400 VTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNT 459

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+ RG+  +VVT+  + D LCK   +  A  LL  M   G+      E+N   Y  LI+G
Sbjct: 460 MVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGL------ELNACTYNSLING 513

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK G L  A      +  AGL P+V TY   I ALC   ++D+AHDL  +M   G+ P 
Sbjct: 514 LCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPT 573

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            V +  LM  F          +LL  M ++N+ P A+
Sbjct: 574 IVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNAT 610



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  + DGLCK+G V  A EL  +M ++ +  N  TYNSLI+G C A   ++A   
Sbjct: 467 PNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRT 526

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   GL+ DV T+  ++D LCK+ ++D A  LL  M+  G++P       IV Y  L
Sbjct: 527 MADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKP------TIVTYNVL 580

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G C  G+++  ++L + +    + PN  TYN  +   C    M    +++  M  + V
Sbjct: 581 MNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNV 640

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN   +  L+    +     +       M ++     AS  S ++ LL K +
Sbjct: 641 EPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKK 693



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 6/227 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN++I+GLCK G++D+A      M    + P+V TY +LI   C + + + A  L 
Sbjct: 503 NACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLL 562

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+D G++  +VT+NV+M+  C + +++   +LL+ M++  + P+A        Y  L+
Sbjct: 563 QEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNA------TTYNSLM 616

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    +K+  E+ + +    + PN  TYNI I   C    M +A     +M  KG  
Sbjct: 617 KQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFR 676

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
                ++ L+    +K +  +  +L   M K        + +  +D 
Sbjct: 677 LTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDF 723



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y +++  LC +G V  A  +   M    +  +   Y +++ GFC   D   A  
Sbjct: 326 EPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARR 385

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM  +GL +D VT+  +++ LC+  ++ EA ++L  M+   +      +++ V Y  
Sbjct: 386 WFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRL------DVDEVTYTV 439

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG CK GK+  A ++  ++ + G+ PNVVTY      LC    +  A++L  +M  KG
Sbjct: 440 LVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKG 499

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N   + +L+    +     + +  +  MD   + P     + ++D L K+
Sbjct: 500 LELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKS 552



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 6/180 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY T+ID LCK G +D+A +L  +M D  I P +VTYN L++GFC +      + 
Sbjct: 536 KPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKK 595

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+++ +  +  T+N +M + C    M   T +   M    V P      N   Y  
Sbjct: 596 LLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEP------NENTYNI 649

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK   +K A+     +   G      +Y+  I  L   ++  +A  LF DM  +G
Sbjct: 650 LIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEG 709



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 113/231 (48%), Gaps = 9/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN ++  LC  G V+ A++LF +M      P+VVTY  LIHG+C   +   A  L 
Sbjct: 261 NVCSYNILLKVLCGAGRVEDARQLFDEMASP---PDVVTYGILIHGYCALGELENAVKLL 317

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M+ RG++ +   +  ++  LC   ++ +A  +++ M+   V  D         Y  ++
Sbjct: 318 DDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDE------AVYTTVL 371

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C  G L +AR     + R GL  + VTY   I+ LC   ++ +A  +  +M  + + 
Sbjct: 372 SGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLD 431

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + V +T L+  + ++ + ++  ++  +M +R V P     + + D L K 
Sbjct: 432 VDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQ 482



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +EA  LF  + D+    +V ++N+++  LC   ++++A +L D M      PD      +
Sbjct: 248 DEAIELFQGLPDK----NVCSYNILLKVLCGAGRVEDARQLFDEMASP---PD------V 294

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V YG LI G C +G+L+NA +L   +   G+ PN   Y   +  LC+  ++  A  +  D
Sbjct: 295 VTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVED 354

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           M    V  +  ++TT++  F  K +          M ++ +
Sbjct: 355 MVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGL 395


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 6/221 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN++I+G C  G +  AK +F  M  +   P+VVTYN+LI GFC +    +   L
Sbjct: 287 PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 346

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  +GL  D  T+N ++   C+  K++ A ++ + M+  GV PD      IV Y  L
Sbjct: 347 FCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPD------IVTYNIL 400

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +D LC  GK++ A  + + L ++ +  +++TYNI I  LC  +++ +A  LF  +  KGV
Sbjct: 401 LDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGV 460

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
            P+ + + T++    RK    +  +L R M +   MP   I
Sbjct: 461 KPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERI 501



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 124/219 (56%), Gaps = 6/219 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + +  +ID   KEG + +A+ L+ +M   ++ PNV TYNSLI+GFC      +A+Y+
Sbjct: 252 PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYM 311

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   DVVT+N ++   CK++++++  +L   M   G+  DAF       Y  L
Sbjct: 312 FDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAF------TYNTL 365

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ GKL  A+++   +   G+ P++VTYNI +  LCN+ +++KA  +  D++   +
Sbjct: 366 IHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEM 425

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             + + +  ++    R ++  +   L RS+ ++ V P A
Sbjct: 426 DVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDA 464



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 119/211 (56%), Gaps = 10/211 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+I G CK   V+   +LF +M  + +  +  TYN+LIHG+C A   N A+
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 379

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M+D G+  D+VT+N+++D LC N K+++A  +++ + +  +      +++I+ Y 
Sbjct: 380 KVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEM------DVDIITYN 433

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLC+  KLK A  L +SLTR G+ P+ + Y   I  LC      +A  L   M+  
Sbjct: 434 IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 493

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           G  P+  I+   +    R + TS   EL+++
Sbjct: 494 GFMPSERIYDETL----RDHYTSLSAELIKA 520



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG V  PN V YNT+I+GLCK   ++ A E+F  M+ + I  + VTYN+LI G   +   
Sbjct: 178 FGFV--PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRW 235

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            +A  L  +M+ R +  +V+ F  ++D   K   + EA  L   MI+  V P      N+
Sbjct: 236 TDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVP------NV 289

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  LI+G C  G L +A+ +   +   G  P+VVTYN  I   C  ++++    LF +
Sbjct: 290 FTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCE 349

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           M  +G+  +   + TL+  + +  + +   ++   M    V P     +I++D L  N
Sbjct: 350 MTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNN 407



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT  ++++G C+     +A  L   M      PNVV YN++I+G C   D N A  
Sbjct: 146 RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALE 205

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +G+++D VT+N ++  L  + +  +A RLL  M++  + P      N++ +  
Sbjct: 206 VFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDP------NVIFFTA 259

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G L  AR L + + R  ++PNV TYN  I+  C    +  A  +F  M  KG
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             P+ V + TL+  F +       ++L   M
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEM 350



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 6/213 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + VTYNT+I GL   G    A  L   M    I+PNV+ + +LI  F    +  EA  
Sbjct: 216 RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARN 275

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+ R +  +V T+N +++  C +  + +A  + DLM+  G  PD      +V Y  
Sbjct: 276 LYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPD------VVTYNT 329

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK  ++++  +L   +T  GL+ +  TYN  IH  C   +++ A  +F  M   G
Sbjct: 330 LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 389

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           V+P+ V +  L+       +  K + ++  + K
Sbjct: 390 VSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK 422



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +  ++  + K    D    L+ +M++  I+ ++ ++  LIH FC  +  + A  L
Sbjct: 77  PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 136

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM  G +  +VT   +++  C+  +  EA  L+D M   G  P      N+V Y  +
Sbjct: 137 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP------NVVIYNTV 190

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK   L NA E+   + + G+  + VTYN  I  L N  +   A  L  DM  + +
Sbjct: 191 INGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKI 250

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + FT L+ +F+++    +   L + M +R+V+P
Sbjct: 251 DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVP 287



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 6/212 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D A  LF +M      P++V +  ++      N  +   YL+ +M + G+  D+ +F ++
Sbjct: 61  DDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTIL 120

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +   C+  ++  A  LL  M++ G RP      +IV  G L++G C+  + + A  L  S
Sbjct: 121 IHCFCRCSRLSLALALLGKMMKLGFRP------SIVTLGSLLNGFCQGNRFQEAVSLVDS 174

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G +PNVV YN  I+ LC +  ++ A ++F  ME KG+  + V + TL+        
Sbjct: 175 MDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGR 234

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +    LLR M KR + P     + ++D  VK
Sbjct: 235 WTDAARLLRDMVKRKIDPNVIFFTALIDTFVK 266



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR       P+ VTYN ++D LC  G ++KA  +   ++   ++ +++TYN +I G C  
Sbjct: 383 NRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT 442

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           +   EA  LF  +  +G++ D + +  ++  LC+     EA +L   M + G  P
Sbjct: 443 DKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMP 497



 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 6/155 (3%)

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           K D+A  L   M+Q    P      +IV +  ++  + K+ K      L   +   G+  
Sbjct: 59  KFDDAFSLFCEMLQSRPIP------SIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISH 112

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++ ++ I IH  C   ++  A  L   M   G  P+ V   +L+  F + N   + + L+
Sbjct: 113 DLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLV 172

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
            SMD    +P   I + +++ L KN    N++  F
Sbjct: 173 DSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVF 207


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 129/247 (52%), Gaps = 6/247 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P+ VTYNT+I G  KEG + KA  L+ +M  +   P+VVT+NS+I+  C A   + A
Sbjct: 111 VCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNA 170

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           E L  +M+D G+  + VT+  ++       + +EAT++   M   G+ PD      IV++
Sbjct: 171 ELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPD------IVSW 224

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
              +D LCK G+ K A E+  S+   G  PN+VTY I +H    +         F  M+ 
Sbjct: 225 NSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKG 284

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            G+  NC++FT L+ ++ ++    + + +L  M  + + P     S ++  L +     +
Sbjct: 285 DGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLAD 344

Query: 251 SIPQFNR 257
           ++ +FN+
Sbjct: 345 AVDKFNQ 351



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N+II+ LCK   VD A+ L  QM D  + PN VTY S+IHG+       EA  +
Sbjct: 149 PDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKM 208

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  D+V++N  MD LCK+ +  EA  +   M   G RP      NIV YG L
Sbjct: 209 FREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRP------NIVTYGIL 262

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G   +      ++   G++ N + + I I A      MD+A  +  +M+ +G+
Sbjct: 263 LHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGL 322

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +P+   ++TL+ +  R    +  ++    M    V P
Sbjct: 323 SPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQP 359



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCY 63
           N+  G   +PNTV Y+++I G C  G + KAKEL  +M +  I  PN+  +NS++H  C 
Sbjct: 350 NQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICK 409

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
                +A ++F  + D G +SD++ FN ++D  C   +M +A  +LD MI  G+ PD F 
Sbjct: 410 EGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTF- 468

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                 Y  L++G  K G++ +   L + ++   + P  VTYNI +  L    +   A  
Sbjct: 469 -----TYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQK 523

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           +  +M   G   +   +  ++    R N T + I + + +   NV
Sbjct: 524 MLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNV 568



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 109/215 (50%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TYNT+++G  K G +D    LF +M D+ I P  VTYN ++ G   A     A+ +
Sbjct: 465 PDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKM 524

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G    + T+N+I+  LC+N   DEA  +   +    V+       NI     +
Sbjct: 525 LHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVK------FNITTLNTM 578

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ +  + + + A++L  +++ +GL+PN  TY I I  L  +  +++A ++F  ME  G 
Sbjct: 579 INSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGC 638

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           AP   +    + + + K E  K    +  +D +++
Sbjct: 639 APCSRLLNDTIRTLLEKGEIVKAGNYMSKVDGKSI 673



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 7/219 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY  ++ G   EG        F  MK + I  N + +  LI  +      +EA  
Sbjct: 253 RPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAML 312

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM  +GL  DV T++ ++  LC+  ++ +A    + MI  GV+P      N V Y  
Sbjct: 313 ILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQP------NTVVYHS 366

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           LI G C  G L  A+EL   +   G+  PN+  +N  +H++C + ++  AH +F  ++  
Sbjct: 367 LIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDI 426

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G   + ++F TL+  +    E  K   +L +M    + P
Sbjct: 427 GERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGP 465



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 118/236 (50%), Gaps = 7/236 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + + +NT+IDG C  G + KA  +   M    I P+  TYN+L++G+  +   ++   
Sbjct: 429 RSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLN 488

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM D+ ++   VT+N+I+D L +  +   A ++L  MI  G        +++  Y  
Sbjct: 489 LFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGT------TVSLPTYNI 542

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLC+      A  + Q L    +  N+ T N  I+++   ++ ++A DLF  +   G
Sbjct: 543 ILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSG 602

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS-IIVDLLVKNEI 247
           + PN   +  ++ + +++    +   +  SM+K    P + +L+  I  LL K EI
Sbjct: 603 LVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGEI 658



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   +N+I+  +CKEG V  A  +F  +KD     +++ +N+LI G+C   +  +A  
Sbjct: 394 RPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFS 453

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+  G+  D  T+N +++   K+ ++D+   L   M    ++P        V Y  
Sbjct: 454 VLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKP------TTVTYNI 507

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DGL + G+   A+++   +   G   ++ TYNI +  LC +   D+A  +F  +    
Sbjct: 508 ILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMN 567

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V  N     T++ S        +  +L  ++    ++P AS   I++  L+K
Sbjct: 568 VKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLK 619



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 5/236 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           V  P   TY  +++G C+    +     F ++    +  +    N+++   C     ++A
Sbjct: 3   VAPPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDA 62

Query: 71  -EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            + L   M + G   D  ++ +++  LC + +  +A  LL +M     + +  C  ++V 
Sbjct: 63  VKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMM----AKEEGVCSPDVVT 118

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I G  K GK+  A  L   + + G +P+VVT+N  I+ALC    +D A  L   M 
Sbjct: 119 YNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMV 178

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             GV PN V +T+++  +       +  ++ R M  R ++P     +  +D L K+
Sbjct: 179 DNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKH 234


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 115/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN++IDG  K G +D     F +MK  +  P+V+TYNSLI+ FC +    +    
Sbjct: 166 PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEF 225

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM   GL+ +VV+++ ++D  CK   M +A +    M + G  P+ F       Y  L
Sbjct: 226 YREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEF------TYTSL 279

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +D  CKIG L +A  L+  +   G+  NVVTY   I  LC+ E+M +A  LF  M   GV
Sbjct: 280 VDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGV 339

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN   +  L+  F++     + +ELL  +  R + P
Sbjct: 340 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQP 376



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 41/281 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ +TYN++I+  CK G + K  E + +MK   + PNVV+Y++L+  FC  +   +A 
Sbjct: 199 CEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAI 258

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +++M   G   +  T+  ++D  CK   + +A RL + M++ GV      E N+V Y 
Sbjct: 259 KFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGV------EWNVVTYT 312

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLC   ++K A +L   +  AG++PN+ +YN  IH     + MD+A +L  +++ +
Sbjct: 313 ALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGR 372

Query: 192 GVAP-----------------------------------NCVIFTTLMPSFIRKNETSKV 216
           G+ P                                   N +I+TTLM ++ +    ++ 
Sbjct: 373 GIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEG 432

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           + LL  M + +         +++D L KN++   +I  F R
Sbjct: 433 LHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGR 473



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 36/269 (13%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +AN   E GV  + N VTY  +IDGLC    + +A++LF +M    + PN+ +YN+LIHG
Sbjct: 295 LANEMLEVGV--EWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHG 352

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP- 119
           F  A + + A  L  E+  RG+Q D++ +   +  LC   K++ A  +++ M + G++  
Sbjct: 353 FVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKAN 412

Query: 120 --------DAF--------------------CEINIVAYGCLIDGLCKIGKLKNARELSQ 151
                   DA+                     E+ +V +  LIDGLCK   +  A +   
Sbjct: 413 TLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFG 472

Query: 152 SLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
            ++   GL PN   Y   I  LC + Q+  A  LF  M  +G+ P+   +T+LM   +++
Sbjct: 473 RMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQ 532

Query: 211 NETSKVIELLRSMD----KRNVMPYASIL 235
               + + L   M     K +++ Y S++
Sbjct: 533 GNMLEALALRDKMAEIGMKLDLLAYTSLV 561



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 42/263 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY +++D  CK G +  A  L  +M +  +  NVVTY +LI G C A    EAE L
Sbjct: 271 PNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKL 330

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+  G+  ++ ++N ++    K + MD A  LL+ +   G++PD      ++ YG  
Sbjct: 331 FGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPD------LLLYGTF 384

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPN-------------------------------- 161
           I GLC + K++ A+ +   +   G+  N                                
Sbjct: 385 IWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDH 444

Query: 162 ---VVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVI 217
              VVT+ + I  LC ++ + KA D F  M    G+ PN  ++T ++    ++N+     
Sbjct: 445 EVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAAT 504

Query: 218 ELLRSMDKRNVMPYASILSIIVD 240
            L   M +  ++P  +  + ++D
Sbjct: 505 TLFEQMAQEGLVPDRTAYTSLMD 527



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P    ++ +   L   G +++A + F +MK   + P   + N L+H F      +  
Sbjct: 58  VCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGV 117

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           +  F +M+  G +  V T+N+++D + K   ++ A  L + M   G+ PD       V Y
Sbjct: 118 KRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDT------VTY 171

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDG  K+G+L +     + +      P+V+TYN  I+  C   ++ K  + + +M+ 
Sbjct: 172 NSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQ 231

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ PN V ++TL+ +F +++   + I+    M +   +P     + +VD
Sbjct: 232 SGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVD 281



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +P+ + Y T I GLC    ++ AK +  +M++  I  N + Y +L+  +  + +  
Sbjct: 371 GRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPT 430

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINI 127
           E  +L  EM +   +  VVTF V++D LCKN+ + +A      M    G++P+A      
Sbjct: 431 EGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNA------ 484

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  +IDGLCK  ++K A  L + + + GL+P+   Y   +        M +A  L   
Sbjct: 485 AVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDK 544

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M   G+  + + +T+L+  F + N+  K    L  M    ++P
Sbjct: 545 MAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILP 587



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 7/188 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K NT+ Y T++D   K G   +   L  +M++ +    VVT+  LI G C     ++A  
Sbjct: 410 KANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAID 469

Query: 73  LFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            F  M  D GLQ +   +  ++D LCK  ++  AT L + M Q G+ PD        AY 
Sbjct: 470 YFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDR------TAYT 523

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG  K G +  A  L   +   G+  +++ Y   +       Q+ KA     +M  +
Sbjct: 524 SLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGE 583

Query: 192 GVAPNCVI 199
            + P+ V+
Sbjct: 584 EILPDEVL 591



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG+  +PN   Y  +IDGLCKE  V  A  LF QM  E + P+   Y SL+ G     +
Sbjct: 477 DFGL--QPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGN 534

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             EA  L  +M + G++ D++ +  ++    +  ++ +A   L+ MI   + PD
Sbjct: 535 MLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPD 588


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 6/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y+TI+DGLCK+G V +A  L  +M  + + PN+VTY  LI G C      E   
Sbjct: 214 KPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGS 273

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+  G++ D+ T N+++D  CK  K+ +A  ++  MI  G  PD F       Y  
Sbjct: 274 LLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVF------TYNS 327

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C   K+  A  +   +   G +P++V +   IH  C D+ ++K   L  +M   G
Sbjct: 328 LIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMG 387

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
             P+ V +TTL+  F +        EL  +M K   +P     ++I+D L K  +
Sbjct: 388 FVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNL 442



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 119/235 (50%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V + ++I G CK+  ++K   L  +M      P+VVT+ +LI GFC A     A+
Sbjct: 353 CLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAK 412

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF+ M   G   ++ T  VI+D LCK   + EA  L + M +  +      ++NIV Y 
Sbjct: 413 ELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNL------DLNIVIYS 466

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG+C  GKL  A EL  SL   GL  NV TY I I  LC    +DKA DL ++ME  
Sbjct: 467 ILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEEN 526

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  P+   +   +   + K E ++ I+ L  M  +     A+   I ++ L  NE
Sbjct: 527 GCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTEITINYLSTNE 581



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 115/213 (53%), Gaps = 6/213 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY  +I+GLCK G    A E   +M++ N  PNVV Y++++ G C     +EA  L  EM
Sbjct: 184 TYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEM 243

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             +G++ ++VT+  ++  LC   +  E   LLD MI+ G+R D    +NI     L+D  
Sbjct: 244 SGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLD-LQTLNI-----LVDAF 297

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK GK+  A+ +   +   G  P+V TYN  IH  C   +M++A  +F  M  +G  P+ 
Sbjct: 298 CKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDI 357

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V+FT+L+  + +    +KV+ LL  M K   +P
Sbjct: 358 VVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVP 390



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 26  LCKEGFV---DKAKELFLQMKDENINPNVVTYNSLIHGFC----YANDGNEAEYLFIEMM 78
           LCK G V   D+A +LF  M      P+V  +  L+        Y    +  +++F  + 
Sbjct: 48  LCKSGKVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAISLVKHIFSSL- 106

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC------ 123
             G+++D +T N++++ LC+ + +     +L  M + G+ P         +  C      
Sbjct: 107 --GIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVA 164

Query: 124 --------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
                          +++  YG LI+GLCK G    A E  + +      PNVV Y+  +
Sbjct: 165 QAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIM 224

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             LC D  + +A +L  +M  KGV PN V +  L+          +   LL  M K  + 
Sbjct: 225 DGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMR 284

Query: 230 PYASILSIIVDLLVK 244
                L+I+VD   K
Sbjct: 285 LDLQTLNILVDAFCK 299


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 134/255 (52%), Gaps = 6/255 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            R   V C PN VTY+++IDGLCK   VD+A  L +Q+K E++ P  + YN++++GF   
Sbjct: 132 KRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQ 191

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +E   L + M ++G   +++ FN ++  L KN + ++A +  + +++ G +P     
Sbjct: 192 GKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKP----- 246

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V Y   + GLCK GK+  A  +   +  + + P+V+TY+  I   C   +MDKA D+
Sbjct: 247 -NVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDV 305

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  M V    P+ V F TL+  F    ++ +   +   M     +P     ++++D +  
Sbjct: 306 FTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCG 365

Query: 245 NEISLNSIPQFNRQK 259
            +   +++  +++ K
Sbjct: 366 ADSVESALEIYHKMK 380



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 18/235 (7%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E GV  K + + ++T+I GLC++G +D+A E F  M +E  +PNV+TYN++++G C AN
Sbjct: 26  KERGV--KMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPNVITYNTVVNGLCKAN 82

Query: 66  DGNEAEYLFIEMMDR-----GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             +E   LF +M  R     G + DV++++ ++D LCK +++D+A      M   G  P 
Sbjct: 83  RIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAP- 141

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V Y  LIDGLCK+ ++  A  L   L    ++P  + YN  ++      +  +
Sbjct: 142 -----NVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSE 196

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE----LLRSMDKRNVMPY 231
             +L L M+ KG   N + F  ++ +  + +E  K  +    LL+S  K NV+ Y
Sbjct: 197 CLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTY 251



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 131/243 (53%), Gaps = 10/243 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y T+I+G CK G VD+A EL  +MK+  +  +V+ +++LI G C     +EA   F  M 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           +     +V+T+N +++ LCK  ++DE   L D M +        CE ++++Y  +ID LC
Sbjct: 62  EE-CSPNVITYNTVVNGLCKANRIDEGLELFDDM-EKRYEASHGCEPDVISYSTVIDALC 119

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K  ++  A E  + +   G  PNVVTY+  I  LC  +++D+A+ L + ++ + + P  +
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAM 179

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVKNEISLNSIPQ 254
            +  ++  F R+ + S+ +ELL  M ++    N++ + ++L      L KN+    +   
Sbjct: 180 YYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHA----LWKNDEQEKACQF 235

Query: 255 FNR 257
           F R
Sbjct: 236 FER 238



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 126/260 (48%), Gaps = 34/260 (13%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-----DENINPNVVTYNSLIHG 60
           +  G  C PN +TYNT+++GLCK   +D+  ELF  M+          P+V++Y+++I  
Sbjct: 58  KSMGEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDA 117

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL----------- 109
            C A   ++A   F  M   G   +VVT++ ++D LCK  ++DEA  LL           
Sbjct: 118 LCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPR 177

Query: 110 ----DLMIQGGVRPDAFCE--------------INIVAYGCLIDGLCKIGKLKNARELSQ 151
               + ++ G  R     E              INI+ +  ++  L K  + + A +  +
Sbjct: 178 AMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFE 237

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            L ++G  PNVVTYN+ +H LC   ++D+A+ + L+M    V P+ + +++++  F +  
Sbjct: 238 RLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAG 297

Query: 212 ETSKVIELLRSMDKRNVMPY 231
              K  ++   M     +P+
Sbjct: 298 RMDKADDVFTRMMVHECIPH 317



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 125/296 (42%), Gaps = 57/296 (19%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY++IIDG CK G +DKA ++F +M      P+ VT+ +L+HGF       EA  +
Sbjct: 281 PDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRV 340

Query: 74  FIEMMDRGLQSDVVTFNVIMD-----------------------------------ELCK 98
             +M++ G    + T+NV+MD                                    LC+
Sbjct: 341 HEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCR 400

Query: 99  NRKMDEATRLLDLMIQGGVRP---------DAFCEINIVAYGC-LIDG---LCKIGKLKN 145
            R++DEA   LD+M    V P         +  C+   V   C ++D    +CK G+   
Sbjct: 401 ARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDE 460

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           A E+ + +   G+ P+  TY   + +LC  +++D A   F  M  +G AP  V +T L+ 
Sbjct: 461 AVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIG 520

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIV---------DLLVKNEISLNSI 252
                +       +  +M      P A  +  +          DLLV+  I   +I
Sbjct: 521 EACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQDLLVRQRIMTMAI 576



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 10  VVCKPNTVTYN-TIIDG---LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           V+CK   V    +++D    +CK G  D+A E+  QM  + + P+  TY +++   C  +
Sbjct: 432 VLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLD 491

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
             + A   F +M  RG    +VT+ +++ E C     D+A R+ + M+  G  P A
Sbjct: 492 RVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQA 547


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 29/270 (10%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R F ++  PN  T+N +ID LCKEG + +A+ LF++MK    +P+VVTYNSLI G+    
Sbjct: 190 RLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCG 249

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------ 119
           D  E E L  EM   G  +DVVT+N +++   K  +M++A      M + GV        
Sbjct: 250 DLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFS 309

Query: 120 ---DAFCEINIV--------------------AYGCLIDGLCKIGKLKNARELSQSLTRA 156
              DAFC+  +V                     Y  L+DG CK G+L +A  L   +   
Sbjct: 310 TFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQ 369

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL+PNVVTY + +  LC + ++ +A ++   ME  GV  N +++TTL+      N + + 
Sbjct: 370 GLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERA 429

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++LL  M  + +    S+   ++  L K++
Sbjct: 430 LDLLNQMKNKGMELDVSLYGTLIWGLCKDQ 459



 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 8/251 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV   N VT++T +D  CKEG V +A +LF QM+   + PN  TY SL+ G C A   +
Sbjct: 300 GVV--ANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLD 357

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  L  EM+ +GL  +VVT+ V++D LCK  K+ EA  +L LM +GGV+       N +
Sbjct: 358 DAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKA------NEL 411

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI G       + A +L   +   G+  +V  Y   I  LC D+++D+A  L   M
Sbjct: 412 LYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKM 471

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
              G+ PN VI+TT+M +  +  + S+ + LL  +      P       ++D L K    
Sbjct: 472 AGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSI 531

Query: 249 LNSIPQFNRQK 259
             +I  FN+ +
Sbjct: 532 SEAISHFNKMR 542



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 107/210 (50%), Gaps = 6/210 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++DGLCKEG V +A  +   M+   +  N + Y +LIHG    N+   A  L
Sbjct: 373 PNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDL 432

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M ++G++ DV  +  ++  LCK++K+DEA  LL  M   G+RP      N V Y  +
Sbjct: 433 LNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRP------NTVIYTTI 486

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +D L K GK   A  L   +  +G  PNVVTY   I  LC    + +A   F  M   G+
Sbjct: 487 MDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGL 546

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            PN   +T L+  F +    +K + L+  M
Sbjct: 547 DPNVQAYTALIDGFCKIGSLNKAMHLMNEM 576



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 6/177 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY  +IDGLCK G + +A   F +M++  ++PNV  Y +LI GFC     N+A +
Sbjct: 512 QPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMH 571

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+D+G+  D V +  ++D   K   + +A  L   MI+ G++ D +C      Y C
Sbjct: 572 LMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYC------YTC 625

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            I G C +  ++ AR +   +   G+ P+   YN  I        M++A  L  +ME
Sbjct: 626 FISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEME 682



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 6/199 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +PNTV Y TI+D L K G   +A  L  ++ D    PNVVTY +LI G C A   +
Sbjct: 473 GCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSIS 532

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA   F +M + GL  +V  +  ++D  CK   +++A  L++ MI  G+  D       V
Sbjct: 533 EAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDK------V 586

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LIDG  K   L++A  L   +  +GL  ++  Y   I   CN   M +A  +  +M
Sbjct: 587 VYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEM 646

Query: 189 EVKGVAPNCVIFTTLMPSF 207
              G+ P+  ++  L+  +
Sbjct: 647 IGTGITPDKTVYNCLIRKY 665



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y T+I GLCK+  VD+AK L  +M    + PN V Y +++     A   +EA  L  +++
Sbjct: 448 YGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKIL 507

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           D G Q +VVT+  ++D LCK   + EA    + M + G+ P      N+ AY  LIDG C
Sbjct: 508 DSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDP------NVQAYTALIDGFC 561

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           KIG L  A  L   +   G+  + V Y   I        +  A  L   M   G+  +  
Sbjct: 562 KIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLY 621

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +T  +  F   N   +   +L  M    + P  ++ + ++
Sbjct: 622 CYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLI 662



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 45/188 (23%)

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           T N I+  L +NR+     RL DL+      P+ F   NIV     ID LCK G+L  AR
Sbjct: 171 TCNHILLRLARNRQGGLVRRLFDLLPV----PNVF-TFNIV-----IDFLCKEGELVEAR 220

Query: 148 ELSQSLTRAGLMPNVVTYNITI--HALCND----EQ------------------------ 177
            L   +   G  P+VVTYN  I  +  C D    EQ                        
Sbjct: 221 ALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCF 280

Query: 178 -----MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
                M+KA+  F +M+ +GV  N V F+T + +F ++    + ++L   M  R +MP  
Sbjct: 281 SKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNE 340

Query: 233 SILSIIVD 240
              + +VD
Sbjct: 341 FTYTSLVD 348


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 117/215 (54%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTY  ++D LC  G VD A   F ++  E + P+ V + +LIHG C  +  ++AE L
Sbjct: 411 PDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEEL 470

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+ RG+  + + FN +++ LCK   +  A  + DLM++  V+ D      ++ Y  L
Sbjct: 471 AVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRD------VITYNTL 524

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L + +   G+ PN VTYN  I+  C + +++ A  LF  M  KGV
Sbjct: 525 IDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGV 584

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            P  V ++T++    +   T+   EL   M K  +
Sbjct: 585 NPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGI 619



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 127/246 (51%), Gaps = 9/246 (3%)

Query: 14  PNTVTYNTIIDGLCKEGF-VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P+ V+YNT+I+GL +EG  +D A  LF QM D+ ++P+VVTYNS+I     A   ++A  
Sbjct: 200 PDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAV 259

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           + + M+  G   + +T N ++   C + K ++A  +   M + GV PD F       Y  
Sbjct: 260 VLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVF------TYNT 313

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK- 191
           L+  LCK G+   AR++  S+ + G  PN  TY   +H    +  + K H L LDM V+ 
Sbjct: 314 LMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHL-LDMMVRN 372

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ P+  IF  L+ ++ +  +    + L   M ++ + P      I++D L       ++
Sbjct: 373 GIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDA 432

Query: 252 IPQFNR 257
           + QF R
Sbjct: 433 MAQFGR 438



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 14/229 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EA 70
           +P+  TYNT++  LCK G   +A+++F  M      PN  TY +L+HG  YA +G+  + 
Sbjct: 305 EPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHG--YATEGSLVKM 362

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            +L   M+  G+Q D   FN+++    K+ K+D+A  L   M + G+ PD       V Y
Sbjct: 363 HHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDT------VTY 416

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           G ++D LC +GK+ +A      L   GL P+ V +   IH LC  ++ DKA +L ++M  
Sbjct: 417 GIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIG 476

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSK---VIELLRSMD-KRNVMPYASIL 235
           +G+ PN + F TL+    ++   ++   + +L+  +D +R+V+ Y +++
Sbjct: 477 RGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLI 525



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 8/247 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYNT+I+G CK G ++ A  LF QM  + +NP +VTY++++ G   A     A+ 
Sbjct: 550 KPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKE 609

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M+  G++ D+ T+N+I+  LC+N   D+A R+     Q     D   E     +  
Sbjct: 610 LYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIF----QNLYLIDFHLENR--TFNI 663

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID L K G+   A++L  SL   GL+PNVVTY + + +L     +++  DLFL +E  G
Sbjct: 664 MIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNG 723

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV--KNEISLN 250
              N  +   L+   ++K E  K    L  +D+ N    AS    +V L+   K +  +N
Sbjct: 724 CTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLEASTAESLVLLVSSGKYDQHIN 783

Query: 251 SIPQFNR 257
           +IP+  R
Sbjct: 784 AIPEKYR 790



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 16/242 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-----KDENINPNVVTYNSLIHGFCYAND 66
           C PN  +Y  ++ GLC E    +A  L   M           P+VV+YN++I+G     +
Sbjct: 158 CTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLL--RE 215

Query: 67  GNE---AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           G +   A +LF +M+D+GL  DVVT+N I+  L K R MD+A  +L  M++ G  P    
Sbjct: 216 GRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMP---- 271

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N + +  L+ G C  GK  +A  + + + R G+ P+V TYN  +  LC + +  +A  
Sbjct: 272 --NRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARK 329

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +F  M  +G  PN   + TL+  +  +    K+  LL  M +  + P   I +I++    
Sbjct: 330 IFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYT 389

Query: 244 KN 245
           K+
Sbjct: 390 KH 391



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 112/256 (43%), Gaps = 33/256 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN+ TY T++ G   EG + K   L   M    I P+   +N LI  +      ++A  
Sbjct: 340 KPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAML 399

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M  +GL  D VT+ ++MD LC   K+D+A      +I  G+ PDA    N++   C
Sbjct: 400 LFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLC 459

Query: 133 -----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                        L++ LCK G +  A+ +   + R  +  +V+
Sbjct: 460 ARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVI 519

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  I   C   ++D+A  L   M + GV PN V + T++  + +         L R M
Sbjct: 520 TYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQM 579

Query: 224 DKRNVMP----YASIL 235
             + V P    Y++IL
Sbjct: 580 ASKGVNPGIVTYSTIL 595



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 114/250 (45%), Gaps = 13/250 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY+ +ID   + G +D A     ++         +T++ L+   C     +EA  +
Sbjct: 89  PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDI 148

Query: 74  FIEMMD-RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-----QGGVRPDAFCEINI 127
            +  M   G   +V ++ +++  LC   +  +A  LL  M+     +GG  PD      +
Sbjct: 149 ALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPD------V 202

Query: 128 VAYGCLIDGLCKIGK-LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           V+Y  +I+GL + G+ L  A  L   +   GL P+VVTYN  I AL     MDKA  + +
Sbjct: 203 VSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLV 262

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M   G  PN +   +L+  +    + +  I + + M +  V P     + ++  L KN 
Sbjct: 263 RMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNG 322

Query: 247 ISLNSIPQFN 256
            S+ +   F+
Sbjct: 323 RSMEARKIFD 332



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 9/172 (5%)

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
             D + A + F E++ R   S +V  N  + +  ++     A  L   M+    RP    
Sbjct: 32  GTDSHHAHHAFDELLHRPTTSSIVDLNRALSDAARHSPA-VAISLFRRMVMVA-RPKV-- 87

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N++ Y  +ID   ++G L  A      + R+G     +T++  + ALC+ ++  +A D
Sbjct: 88  PPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMD 147

Query: 184 LFL-DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM----DKRNVMP 230
           + L  M V G  PN   +T L+     +N + + + LL +M    D R   P
Sbjct: 148 IALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYP 199


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 129/269 (47%), Gaps = 43/269 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY T+I GLC    VD A EL  +M +  I PNVV Y+ L+HG+C          
Sbjct: 126 RPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGK 185

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  RG++ DVV +  ++D LC++ K+ +A R++D+M + G+ P      N+V Y  
Sbjct: 186 VFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEP------NVVTYNV 239

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI------------------------- 167
           LI+ +CK G ++ A +L ++++  G+ P+VVTYN                          
Sbjct: 240 LINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGE 299

Query: 168 ------------TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
                        IH LC    M +A  +   M   G   N V F  L+   +R ++  K
Sbjct: 300 TRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKK 359

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +EL+  M    + P +   SI+++   K
Sbjct: 360 AMELMDEMASSGLQPDSFTYSILINGFCK 388



 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           + E  +  +PN ++Y T++  LC +    +A  L   M+D  + P+VVTY +LI G C A
Sbjct: 83  SHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDA 142

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            D + A  L  EM + G++ +VV ++ ++   CK  + +   ++ + M   G+ PD    
Sbjct: 143 ADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPD---- 198

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             +V Y  LID LC+ GK+K A  +   +T  GL PNVVTYN+ I+++C +  + +A DL
Sbjct: 199 --VVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDL 256

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             +M  KGV P+ V + TL+       E  + + LL  M
Sbjct: 257 RKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEM 295



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 9/219 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCYANDGNEAE 71
           + V+YNT++  LC++G +D A  L   M  E      PN ++Y +L+   C      +A 
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M D G++ DVVT+  ++  LC    +D A  LL+ M + G+ P      N+V Y 
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEP------NVVVYS 168

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           CL+ G CK G+ ++  ++ + ++  G+ P+VV Y   I +LC   ++ KA  +   M  +
Sbjct: 169 CLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTER 228

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ PN V +  L+ S  ++    + ++L ++M ++ V P
Sbjct: 229 GLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQP 267



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 132/277 (47%), Gaps = 31/277 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T+N++I GLCK G++ +A ++   M +     N+V +N LI G    +   +A  
Sbjct: 303 RPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAME 362

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------------- 119
           L  EM   GLQ D  T++++++  CK R+++ A   L  M   G+ P             
Sbjct: 363 LMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMC 422

Query: 120 ---------------DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                          D  C+++  AY  +I G  K G+ K A E  + +   GL+P+ VT
Sbjct: 423 DQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVT 482

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+I I+       +  A  +   M   G  P+  +F +L+  +  K +T K++EL R M 
Sbjct: 483 YSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMT 542

Query: 225 KRNVMPYASILSIIVDLL---VKNEISLNSIPQFNRQ 258
            ++V     I+S IV  L   ++ +  L S+P F+ +
Sbjct: 543 AKDVALDPKIISTIVTSLGASIEGQKLLQSLPGFDTE 579



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 122/235 (51%), Gaps = 9/235 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYANDGNEA 70
           +P+ VTYNT+I GL     +D+A  L  +M   +  + P+++T+NS+IHG C      +A
Sbjct: 266 QPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQA 325

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +   M + G + ++V FN+++  L +  K+ +A  L+D M   G++PD+F       Y
Sbjct: 326 LQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSF------TY 379

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI+G CK+ +++ A      +   G+ P  V Y   + A+C+   M +A DLF +M+ 
Sbjct: 380 SILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMD- 438

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +    +   ++T++    +  E     E L+ M    ++P A   SI +++  K+
Sbjct: 439 RNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKS 493



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 3/161 (1%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D V++N ++  LC+   +D A  LL +M      P      N ++Y  L+  LC   +  
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSH---EPRLASRPNAISYTTLMRALCADRRAA 111

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            A  L +S+   G+ P+VVTY   I  LC+   +D A +L  +M   G+ PN V+++ L+
Sbjct: 112 QAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLL 171

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             + +      V ++   M  R + P   + + ++D L ++
Sbjct: 172 HGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRH 212


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN-INPNVVTYNSLIHGFCYANDG 67
           G  C P+ VTYNT+I G CK   + KA E+F  +K  +  +P+VVTY S+I G+C A   
Sbjct: 234 GFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKM 293

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA  L  +M+  G+    VTFNV++D   K  +M  A  +   MI  G  PD      +
Sbjct: 294 QEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPD------V 347

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V +  LIDG C++G++     L + +   G+ PN  TY+I I+ALC + ++ KA +L   
Sbjct: 348 VTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQ 407

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +  K + P   ++  ++  F +  + ++ I ++  M+K+   P     +I++
Sbjct: 408 LASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILI 459



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T T+N +I GLC  G  +KA EL   M      P++VTYN+LI GFC +N+  +A  +F
Sbjct: 205 DTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMF 264

Query: 75  IEM-MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            ++    G   DVVT+  ++   CK  KM EA+ LLD M++ G+ P        V +  L
Sbjct: 265 DDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTN------VTFNVL 318

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K G++  A E+   +   G  P+VVT+   I   C   Q+++   L+ +M  +G+
Sbjct: 319 VDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGM 378

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN   ++ L+ +  ++N   K  ELL  +  ++++P   + + ++D   K
Sbjct: 379 FPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCK 429



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY ++I G CK G + +A  L   M    I P  VT+N L+ G+  A + + AE
Sbjct: 273 CSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAE 332

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M+  G   DVVTF  ++D  C+  ++++  RL + M   G+ P+AF       Y 
Sbjct: 333 EIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAF------TYS 386

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+ LCK  +L  AREL   L    ++P    YN  I   C   ++++A  +  +ME K
Sbjct: 387 ILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKK 446

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              P+ + FT L+     K    + + +   M      P    +S ++  L+K
Sbjct: 447 KCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLK 499



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 7/226 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           N++++ L K   V+ A +LF + ++ ++ N +  T+N LI G C      +A  L   M 
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFEEHLRFQSCN-DTKTFNILIRGLCGVGKAEKAVELLGGMS 233

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G   D+VT+N ++   CK+ ++ +A  + D      V+  + C  ++V Y  +I G C
Sbjct: 234 GFGCLPDIVTYNTLIKGFCKSNELKKANEMFD-----DVKSSSGCSPDVVTYTSMISGYC 288

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GK++ A  L   + R G+ P  VT+N+ +       +M  A ++   M   G  P+ V
Sbjct: 289 KAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVV 348

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            FT+L+  + R  + ++   L   M+ R + P A   SI+++ L K
Sbjct: 349 TFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCK 394



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VT+N ++DG  K G +  A+E+  +M      P+VVT+ SLI G+C     N+   L
Sbjct: 310 PTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRL 369

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM  RG+  +  T++++++ LCK  ++ +A  LL  +    + P  F       Y  +
Sbjct: 370 WEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPF------MYNPV 423

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK GK+  A  + + + +    P+ +T+ I I   C   +M +A  +F  M   G 
Sbjct: 424 IDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGC 483

Query: 194 APNCVIFTTLMPSFIRKNETSKVIEL 219
           +P+ +  ++L+   ++     +   L
Sbjct: 484 SPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY+ +I+ LCKE  + KA+EL  Q+  ++I P    YN +I GFC A   NEA  +
Sbjct: 380 PNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVI 439

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +  + D +TF +++   C   +M EA  +   M+  G  PD       +    L
Sbjct: 440 VEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDK------ITVSSL 493

Query: 134 IDGLCKIGKLKNARELSQSLTRA----GLMPNVVTYNITIHA 171
           +  L K G  K A  L+Q   +     G      T N+T+ A
Sbjct: 494 LSCLLKAGMAKEAYHLNQIAHKGQINDGAPLETKTANVTLAA 535



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 28/227 (12%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           NI  +  TYN L    C A   + A  +F  M   G+  +      ++    +  K+  A
Sbjct: 98  NIRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCA 157

Query: 106 T-----------------RLLDLMIQGGVRPDA---------FCEIN-IVAYGCLIDGLC 138
           T                  LL+ +++     DA         F   N    +  LI GLC
Sbjct: 158 TALLLQSYEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLC 217

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME-VKGVAPNC 197
            +GK + A EL   ++  G +P++VTYN  I   C   ++ KA+++F D++   G +P+ 
Sbjct: 218 GVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDV 277

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V +T+++  + +  +  +   LL  M +  + P     +++VD   K
Sbjct: 278 VTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAK 324



 Score = 37.4 bits (85), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ +T+  +I G C +G + +A  +F +M     +P+ +T +SL+     A    EA 
Sbjct: 448 CKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAY 507

Query: 72  YL 73
           +L
Sbjct: 508 HL 509


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TYN II  LCK G +D+A + F +M  +N NP+V TY++L++G C     +EA +
Sbjct: 171 QPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVF 230

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G   + VTFNV++D L KN  +  A +L+D M   G  P      N V Y  
Sbjct: 231 LLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVP------NEVTYNT 284

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  GKL  A  L + +  +  +PN VTY   I+ L    + +    + + ME +G
Sbjct: 285 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 344

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              N  I+++L+    ++ ++   + L + M ++   P   +    +D L ++E
Sbjct: 345 QKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDE 398



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+N +ID L K G + +A +L   M  +   PN VTYN+LIHG C     ++A 
Sbjct: 240 CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAL 299

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+      + VT+  I++ L K R+ ++   +L  M + G + + +       Y 
Sbjct: 300 SLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEY------IYS 353

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GL K GK +NA  L + +   G  PNVV Y   I  LC DE+ D+A D+  +M  K
Sbjct: 354 SLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSK 413

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G  PN   +++LM  F +K ++ K I + + M
Sbjct: 414 GFLPNAFTYSSLMKGFFKKGDSQKAILVWKEM 445



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN---INPNVVTYNSLIHGFCYANDGN 68
           CK    ++N++++ + +EG    A + +L +   N     PN++TYN +I   C     +
Sbjct: 132 CKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQID 191

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A   F EM  +    DV T++ +M+ LCK R++DEA  LLD M   G  P      N V
Sbjct: 192 RAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLP------NPV 245

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  LID L K G L  A +L  ++   G +PN VTYN  IH LC   ++DKA  L   M
Sbjct: 246 TFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKM 305

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
                 PN V + T++   +++      + +L SM++R       I S ++  L K   S
Sbjct: 306 VSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKS 365

Query: 249 LNSI 252
            N++
Sbjct: 366 ENAV 369



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 15/240 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN V Y   IDGLC++   D+A+++  +M  +   PN  TY+SL+ GF    D  +A 
Sbjct: 380 CKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAI 439

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ EMM + ++ +VV  +V+++ LC++ ++ EA  +   M+  G++PD      +VAY 
Sbjct: 440 LVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPD------VVAYS 493

Query: 132 CLIDGLCKIGKLKNARELSQSL--TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            +I GLC +G +    +L   +        P+VVTYNI  +ALC  + + +A DL   M 
Sbjct: 494 SMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSML 553

Query: 190 VKGVAPN---CVIFTTLMPSFIRKNETSKVI--ELLRSMDKRNVMPYASILSIIVDLLVK 244
            +G  P+   C IF   +   I   +  ++   EL+  + KR      S L I+ ++L++
Sbjct: 554 DEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERK--LSALRIVEEMLLR 611



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 31/262 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY TII+GL K+   +    + + M++     N   Y+SLI G         A 
Sbjct: 310 CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAV 369

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-------- 123
            L+ EM ++G + +VV +   +D LC++ K DEA  +L  M+  G  P+AF         
Sbjct: 370 RLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGF 429

Query: 124 ---------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                                  N+V    L++GLC+ G+L+ A  +   +   GL P+V
Sbjct: 430 FKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDV 489

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVK--GVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           V Y+  I  LC+   +DK   LF +M+ +     P+ V +  L  +  R++  ++ I+LL
Sbjct: 490 VAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLL 549

Query: 221 RSMDKRNVMPYASILSIIVDLL 242
            SM      P +   +I ++ L
Sbjct: 550 NSMLDEGCDPDSLTCNIFLETL 571



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA---GLMPNVVTYNITIHALCNDE 176
           D  C+  + ++  +++ + + G    A +    +  A   G  PN++TYN+ I ALC   
Sbjct: 129 DLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLG 188

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           Q+D+A D F +M +K   P+   ++TLM    ++    + + LL  M     +P     +
Sbjct: 189 QIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFN 248

Query: 237 IIVDLLVKN 245
           +++D L KN
Sbjct: 249 VLIDALSKN 257


>gi|12324348|gb|AAG52140.1|AC022355_1 hypothetical protein; 19198-19943 [Arabidopsis thaliana]
          Length = 233

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 121/231 (52%), Gaps = 21/231 (9%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I G CK   VD+  ELF +M    +  N VTY +LI G   A D + A+
Sbjct: 10  CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQ 69

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM+  G+  D++T+N+++D LCKN K+++A                     +V +G
Sbjct: 70  EIFKEMVSDGVPPDIMTYNILLDGLCKNGKLEKA---------------------LVVFG 108

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +   +CK GK+++  +L  SL+  G+ PNVVTY   I   C     ++A+ LF  M+  
Sbjct: 109 YMQKRMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMISGFCKKGFKEEAYTLFRKMKED 168

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  P+   + TL+ + +R  + +   EL++ M        AS   ++ D+L
Sbjct: 169 GPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML 219



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY T+I G CK+GF ++A  LF +MK++   P+  TYN+LI       D   +  
Sbjct: 136 KPNVVTYTTMISGFCKKGFKEEAYTLFRKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 195

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM       D  T+ ++ D L   R
Sbjct: 196 LIKEMRSCRFAGDASTYGLVTDMLHDGR 223



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%)

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           PNVVTYN  I   C  +++D+  +LF +M  +G+  N V +TTL+    +  +     E+
Sbjct: 12  PNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEI 71

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKN 245
            + M    V P     +I++D L KN
Sbjct: 72  FKEMVSDGVPPDIMTYNILLDGLCKN 97


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + T+IDGLCK   + +AK +FL M    + P V  YNSLIHG   +    EA   
Sbjct: 276 PNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAF 335

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E++ + L+ D  T ++++  LC   +M  ATR L++M Q G+       +N  AY  L
Sbjct: 336 FQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGI------ALNAAAYNVL 389

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  CK G L  A      ++  G+ PNVVTY+  I     + +M+ A  ++ +M  KGV
Sbjct: 390 IDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGV 449

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V +T L+    +  +      L + M+++ +   A  +S++VD L +
Sbjct: 450 EPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCR 500



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 103/191 (53%), Gaps = 4/191 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV  +PN VTY+++IDG  K G ++ A  ++ +M  + + PNVVTY +LIHG     D
Sbjct: 411 EVGV--EPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGD 468

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI- 125
            + A +L  EM ++G+ S+ +T +V++D LC+  ++ +A R + +   G  + +    I 
Sbjct: 469 MDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFI-MEYSGQKKSEKNPSIA 527

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N V Y  LI GL   G+   A      +  +G++P+  TY + I  LC    +  A  L+
Sbjct: 528 NSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLY 587

Query: 186 LDMEVKGVAPN 196
            DM   GV P 
Sbjct: 588 ADMVKVGVKPT 598



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P     N I+DGL K   + +  ELF +M    + P+VVTYN+LI+   +  D  +A  +
Sbjct: 136 PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEV 195

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+ R +  +VVT+  ++  LC+   + +A  L   M + G+RP      N+  Y  L
Sbjct: 196 WDQMVARRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGMRP------NLYTYNAL 249

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +    K   +K+A      L + GL+PN V +   I  LC   ++ +A ++FLDM    V
Sbjct: 250 MSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEV 309

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           AP   ++ +L+    R     + +   + + ++ + P     SI+V
Sbjct: 310 APTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKELRPDEFTCSIVV 355



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+I+    +G V KA E++ QM    I+PNVVTY ++I+  C  +   +AE L
Sbjct: 171 PSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCIGDAEGL 230

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+EM + G++ ++ T+N +M    K   +  A      +++ G+ P      N V +  L
Sbjct: 231 FLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVP------NDVIFTTL 284

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  ++  A+ +   + R  + P V  YN  IH         +A   F ++  K +
Sbjct: 285 IDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKEL 344

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+    + ++       +       L  M +  +   A+  ++++D   K+
Sbjct: 345 RPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKS 396



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T + ++ GLC  G +  A      M+   I  N   YN LI  +C + + +EA  
Sbjct: 345 RPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALV 404

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               M + G++ +VVT++ ++D   KN +M+ A  +   M+  GV P      N+V Y  
Sbjct: 405 TCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEP------NVVTYTA 458

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           LI G  K G +  A  L + +   G+  N +T ++ +  LC + ++  A
Sbjct: 459 LIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDA 507



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
             ++  L +    D+A  +F ++++    P +   N+++ G   A+       LF EM+ 
Sbjct: 110 GVLVIALSQMALPDEALSVFGRLREL---PALPACNAILDGLVKAHMLARVWELFDEMLG 166

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           RG+   VVT+N +++       + +A  + D M+   + P      N+V Y  +I  LC+
Sbjct: 167 RGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDP------NVVTYTTMIYALCE 220

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
              + +A  L   +  AG+ PN+ TYN  + +    + +  A   + D+   G+ PN VI
Sbjct: 221 EDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVI 280

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           FTTL+    + N  ++   +   M +  V P   + + ++
Sbjct: 281 FTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLI 320


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 132/242 (54%), Gaps = 11/242 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y T+ID  CK GF+++A+  F +M+ +   PNVVTY +LIH +  +   ++A  +
Sbjct: 255 PDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEV 314

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR-PD----------AF 122
           +  M+ +G   ++VT+  ++D LCK  K+++A+++  +M +  V  PD          A 
Sbjct: 315 YEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGAS 374

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
            E N+  YG L+DGLCK  ++K AR+L +S++  G  PN V Y+  I   C   ++D+A 
Sbjct: 375 NEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQ 434

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           ++F  M   G  PN   +++L+    +       +++L  M + +  P   I + ++D L
Sbjct: 435 EVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGL 494

Query: 243 VK 244
            K
Sbjct: 495 CK 496



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 129/255 (50%), Gaps = 16/255 (6%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +PN  TY  ++DGLCK   V +A++L   M  E   PN V Y++LI G C A   +
Sbjct: 372 GASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLD 431

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA+ +F  M++ G   +V T++ ++D L K++++D A ++L  M++    P      N+V
Sbjct: 432 EAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAP------NVV 485

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  +IDGLCK+GK   A +L   +   G  PNVVTY   I       +++K  +L   M
Sbjct: 486 IYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQM 545

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASIL-----SIIV 239
             KG APN V +  L+          +  +LL  M +    R+V  Y  ++       I 
Sbjct: 546 SSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIA 605

Query: 240 DLLVKNEISLN-SIP 253
            L +  EIS N S+P
Sbjct: 606 SLYLSFEISENDSVP 620



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 122/250 (48%), Gaps = 23/250 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY+ +I  LC    V+KA +LF +MK   I P+V  Y +LI  FC A    +A   
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G   +VVT+  ++    K+RK+ +A  + ++M+  G  P      NIV Y  L
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTP------NIVTYTAL 333

Query: 134 IDGLCKIGKLKNARELSQSLTR-----------------AGLMPNVVTYNITIHALCNDE 176
           IDGLCK GK++ A ++ + + +                 A   PNV TY   +  LC   
Sbjct: 334 IDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAY 393

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           Q+ +A DL   M V+G  PN V++  L+    +  +  +  E+  +M +    P     S
Sbjct: 394 QVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYS 453

Query: 237 IIVDLLVKNE 246
            ++D L K++
Sbjct: 454 SLIDRLFKDK 463



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 23/246 (9%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +I    K   V KA E++  M  +   PN+VTY +LI G C A    +A 
Sbjct: 288 CAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKAS 347

Query: 72  YLF-------IEMMDRGL----------QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            ++       +E+ D  +          + +V T+  ++D LCK  ++ EA  LL  M  
Sbjct: 348 QIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSV 407

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            G      CE N V Y  LIDG CK GKL  A+E+  ++   G  PNV TY+  I  L  
Sbjct: 408 EG------CEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFK 461

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
           D+++D A  +   M     APN VI+T ++    +  +T +  +L+  M+++   P    
Sbjct: 462 DKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVT 521

Query: 235 LSIIVD 240
            + ++D
Sbjct: 522 YTAMID 527



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 115/239 (48%), Gaps = 11/239 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TY  ++ G   +  + + K +   M  E   P+   +NSL+H +C + D   A 
Sbjct: 73  CLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAY 132

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRK-----MDEATRLLDLMIQGGVRPDAFCEIN 126
            L  +M+  G Q   V +N+++  +C + +     +D A +    M++ GV      ++N
Sbjct: 133 KLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGV---VLNKVN 189

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           I  +      LC IGK + A  + + +   G +P+  TY+  I  LCN  +++KA  LF 
Sbjct: 190 ISNFS---RCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQ 246

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +M+  G+AP+  ++TTL+ SF +     +       M++    P     + ++   +K+
Sbjct: 247 EMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKS 305



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 31/242 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  +IDGLCK G  D+A +L + M+++  NPNVVTY ++I GF  +    +  
Sbjct: 480 CAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCL 539

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-------GGVRP--DAF 122
            L  +M  +G   + VT+ V+++  C    +DEA +LL+ M Q        G R   + F
Sbjct: 540 ELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGF 599

Query: 123 CEINIVA------------------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
               I +                  Y  LID   K G+L+ A EL++ L+      +   
Sbjct: 600 NREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPF-SAAN 658

Query: 165 YNITIHALCN---DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
            NI I  + N     + DKA +L+ DM  +G  P   I   L+   +R N   + ++LL 
Sbjct: 659 QNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNRWEEALQLLD 718

Query: 222 SM 223
           S+
Sbjct: 719 SI 720



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 9/170 (5%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   G + D  T       LCK+ K  EA  LL+   +    PD       V Y  +I G
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLE---KEEFVPDT------VLYTKMISG 51

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LC+    + A +    +  +  +PNV+TY I +    N E++ +   +   M  +G  P+
Sbjct: 52  LCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPS 111

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             IF +L+ ++ R  + +   +LL+ M +    P   + +I++  +  +E
Sbjct: 112 PRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSE 161


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 124/229 (54%), Gaps = 6/229 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY+ +++G  K+G   +  +++  MK   I PN   YN LI  +C     ++A  +
Sbjct: 226 PNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKV 285

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM ++G+   V+T+N+++  LC+ +K  EA +L+  + + G+ P      NIV Y  L
Sbjct: 286 FAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSP------NIVTYNIL 339

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G C +GK+  A  L   L  +GL P +VTYN  I      E +  A DL  +ME + +
Sbjct: 340 INGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCI 399

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           AP+ V +T L+ +F R N T K  E+   M+K  ++P     S+++  L
Sbjct: 400 APSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGL 448



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 8/239 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
            EFG+   PN V Y T+IDG CK G V  AK LF +M    + PN  TY+ L++GF    
Sbjct: 185 EEFGL--SPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQG 242

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              E   ++  M   G+  +   +N ++ E C    +D+A ++   M + G+        
Sbjct: 243 LQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGI------AC 296

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            ++ Y  LI GLC+  K   A +L   + + GL PN+VTYNI I+  C+  +MD A  LF
Sbjct: 297 GVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLF 356

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             ++  G++P  V + TL+  + +    +  ++L++ M++R + P     +I++D   +
Sbjct: 357 NQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFAR 415



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 29/262 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   YN +I   C  G VDKA ++F +M+++ I   V+TYN LI G C      EA  L
Sbjct: 261 PNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKL 320

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA---- 129
             ++   GL  ++VT+N++++  C   KMD A RL + +   G+ P       ++A    
Sbjct: 321 VHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSK 380

Query: 130 -------------------------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                    Y  LID   ++   + A E+   + ++GL+P+V T
Sbjct: 381 VENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYT 440

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y++ IH LC    M +A  LF  +    + PN VI+ T++  + ++  + + + LL  M 
Sbjct: 441 YSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMV 500

Query: 225 KRNVMPYASILSIIVDLLVKNE 246
              ++P  +     + LL ++E
Sbjct: 501 HSGMVPNVASFCSTIGLLCRDE 522



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 6/225 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN +I+G C  G +D A  LF Q+K   ++P +VTYN+LI G+    +   A  L
Sbjct: 331 PNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDL 390

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +R +    VT+ +++D   +    ++A  +  LM + G+ PD +       Y  L
Sbjct: 391 VKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVY------TYSVL 444

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC  G +K A +L +SL    L PN V YN  IH  C +    +A  L  +M   G+
Sbjct: 445 IHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGM 504

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            PN   F + +    R  +  +   LL  M    + P  S+  ++
Sbjct: 505 VPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 42/264 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C   T  Y+TI++        D+A      M  E   P   T+N+L+     +N  ++A 
Sbjct: 85  CLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAW 144

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           ++F E+  + +  D  +F +++   C+     +  RLL ++ + G+ P      N+V Y 
Sbjct: 145 WIFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSP------NVVIYT 197

Query: 132 CLIDGLCKIGKLKNAR-----------------------------------ELSQSLTRA 156
            LIDG CK G +  A+                                   ++ +++ R+
Sbjct: 198 TLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRS 257

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G++PN   YN  I   CN   +DKA  +F +M  KG+A   + +  L+    R  +  + 
Sbjct: 258 GIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEA 317

Query: 217 IELLRSMDKRNVMPYASILSIIVD 240
           ++L+  ++K  + P     +I+++
Sbjct: 318 VKLVHKVNKVGLSPNIVTYNILIN 341



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN+V YNT+I G CKEG   +A  L  +M    + PNV ++ S I   C      EAE 
Sbjct: 470 QPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAEL 529

Query: 73  LFIEMMDRGLQSDVVTFNVI 92
           L  +M++ GL+  V  + ++
Sbjct: 530 LLGQMINSGLKPSVSLYKMV 549


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TYN II  LCK G +D+A + F +M  +N NP+V TY++L++G C     +EA +
Sbjct: 195 QPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVF 254

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G   + VTFNV++D L KN  +  A +L+D M   G  P      N V Y  
Sbjct: 255 LLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVP------NEVTYNT 308

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  GKL  A  L + +  +  +PN VTY   I+ L    + +    + + ME +G
Sbjct: 309 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 368

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              N  I+++L+    ++ ++   + L + M ++   P   +    +D L ++E
Sbjct: 369 QKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDE 422



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+N +ID L K G + +A +L   M  +   PN VTYN+LIHG C     ++A 
Sbjct: 264 CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAL 323

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+      + VT+  I++ L K R+ ++   +L  M + G + + +       Y 
Sbjct: 324 SLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEY------IYS 377

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GL K GK +NA  L + +   G  PNVV Y   I  LC DE+ D+A D+  +M  K
Sbjct: 378 SLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSK 437

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G  PN   +++LM  F +K ++ K I + + M
Sbjct: 438 GFLPNAFTYSSLMKGFFKKGDSQKAILVWKEM 469



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN---INPNVVTYNSLIHGFCYANDGN 68
           CK    ++N++++ + +EG    A + +L +   N     PN++TYN +I   C     +
Sbjct: 156 CKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQID 215

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A   F EM  +    DV T++ +M+ LCK R++DEA  LLD M   G  P      N V
Sbjct: 216 RAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLP------NPV 269

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  LID L K G L  A +L  ++   G +PN VTYN  IH LC   ++DKA  L   M
Sbjct: 270 TFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKM 329

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
                 PN V + T++   +++      + +L SM++R       I S ++  L K   S
Sbjct: 330 VSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKS 389

Query: 249 LNSI 252
            N++
Sbjct: 390 ENAV 393



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 15/240 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN V Y   IDGLC++   D+A+++  +M  +   PN  TY+SL+ GF    D  +A 
Sbjct: 404 CKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAI 463

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ EMM + ++ +VV  +V+++ LC++ ++ EA  +   M+  G++PD      +VAY 
Sbjct: 464 LVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPD------VVAYS 517

Query: 132 CLIDGLCKIGKLKNARELSQSL--TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            +I GLC +G +    +L   +        P+VVTYNI  +ALC  + + +A DL   M 
Sbjct: 518 SMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSML 577

Query: 190 VKGVAPN---CVIFTTLMPSFIRKNETSKVI--ELLRSMDKRNVMPYASILSIIVDLLVK 244
            +G  P+   C IF   +   I   +  ++   EL+  + KR      S L I+ ++L++
Sbjct: 578 DEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERK--LSALRIVEEMLLR 635



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 31/262 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY TII+GL K+   +    + + M++     N   Y+SLI G         A 
Sbjct: 334 CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAV 393

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-------- 123
            L+ EM ++G + +VV +   +D LC++ K DEA  +L  M+  G  P+AF         
Sbjct: 394 RLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGF 453

Query: 124 ---------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                                  N+V    L++GLC+ G+L+ A  +   +   GL P+V
Sbjct: 454 FKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDV 513

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVK--GVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           V Y+  I  LC+   +DK   LF +M+ +     P+ V +  L  +  R++  ++ I+LL
Sbjct: 514 VAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLL 573

Query: 221 RSMDKRNVMPYASILSIIVDLL 242
            SM      P +   +I ++ L
Sbjct: 574 NSMLDEGCDPDSLTCNIFLETL 595



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA---GLMPNVVTYNITIHALCNDE 176
           D  C+  + ++  +++ + + G    A +    +  A   G  PN++TYN+ I ALC   
Sbjct: 153 DLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLG 212

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           Q+D+A D F +M +K   P+   ++TLM    ++    + + LL  M     +P     +
Sbjct: 213 QIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFN 272

Query: 237 IIVDLLVKN 245
           +++D L KN
Sbjct: 273 VLIDALSKN 281


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN+++ GLC++G +  A ++  +M ++  +P++ TYN +I+G C   + ++A  
Sbjct: 286 KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAV 345

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  + + +G   DV TFN ++D  CK  K+D A +L++ M   G+ PDA      + Y  
Sbjct: 346 VMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDA------ITYNS 399

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK GK K   E  + +   G  PN +TYNI I   C   Q+++A  + + M   G
Sbjct: 400 VLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDG 459

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ + F TL+  F R  +      L + +D++     A   +I++
Sbjct: 460 LVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILI 506



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 10/243 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYNTIIDG CK   + +A EL      +   P+ VTY SLI+G C   D   A 
Sbjct: 215 CIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERAL 274

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF E   + L+ D+V +N ++  LC+   +  A ++++ M++ G  PD      I  Y 
Sbjct: 275 ELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPD------IWTYN 328

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GLCK+G + +A  +       G +P+V T+N  I   C   ++D A  L   M + 
Sbjct: 329 IVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMY 388

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+AP+ + + +++    +  +  +V E    M  +   P A    I  ++L++N   +N 
Sbjct: 389 GIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNA----ITYNILIENFCKINQ 444

Query: 252 IPQ 254
           + +
Sbjct: 445 LEE 447



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 122/245 (49%), Gaps = 7/245 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C    + Y T++ GL   G    A+ LF +M   ++ P+V T+N+++H  C   D  E+ 
Sbjct: 76  CDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESG 135

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +++ RG+  +  T N+ +  LC+  +++EA  L++ M       DA+   ++V Y 
Sbjct: 136 ALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM-------DAYIAPDVVTYN 188

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK  K++ A +  + +   G +P+  TYN  I   C  + + +A +L  D   K
Sbjct: 189 TLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFK 248

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+ V + +L+     + +  + +EL      +++ P   + + +V  L +  + L++
Sbjct: 249 GFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHA 308

Query: 252 IPQFN 256
           +   N
Sbjct: 309 LQVMN 313



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 6/187 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN +TYN +I+  CK   +++A  + ++M  + + P+ +++N+LIHGFC   D + A 
Sbjct: 425 CRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAY 484

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF ++ ++G  +   TFN+++        M  A ++   MI  G +PD +       Y 
Sbjct: 485 LLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLY------TYR 538

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG CK   +  A      +   G +P++ T+   +++L  + ++ +A  +   M   
Sbjct: 539 VLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRM 598

Query: 192 GVAPNCV 198
           GV P  V
Sbjct: 599 GVVPEVV 605



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 46/259 (17%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC----- 62
           FG  C P    YN I+D L    + D+A +++++M    + P+  T+   I  FC     
Sbjct: 4   FG--CPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRP 61

Query: 63  -----------------------------YAN-DGNEAEYLFIEMMDRGLQSDVVTFNVI 92
                                        YA+  G +A +LF EM+ R +  DV TFN +
Sbjct: 62  HVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNV 121

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +  LC+   + E+  LL  +++ G+  + F C I        I GLC+ G+L+ A  L +
Sbjct: 122 LHALCQKGDIMESGALLAKVLKRGMSVNKFTCNI-------WIRGLCEGGRLEEAVALVE 174

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
           S+  A + P+VVTYN  +  LC D ++ +A      M  +G  P+   + T++  + +++
Sbjct: 175 SMD-AYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRD 233

Query: 212 ETSKVIELLRSMDKRNVMP 230
              +  ELL+    +  +P
Sbjct: 234 MLQEATELLKDAIFKGFVP 252



 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P    YN  + AL N    D+AH +++ M   GVAP+    T  + SF         
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 217 IELLRSMDKR--NVMPYA 232
           + LLRS+ +R  +V P A
Sbjct: 65  LRLLRSLPERGCDVKPLA 82


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 6/215 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN +I+G CK    D+A  LF +M    + P+VVTYNSLI+G C +   + A  L 
Sbjct: 204 NVWSYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLV 263

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM DRG   D++T++ ++D LCKN ++D+A  LL  +   G+RP      N+  Y  LI
Sbjct: 264 DEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRP------NMYTYTILI 317

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK G+L++A  + + L   G    V TY + IH  CN    D+A  L   M+     
Sbjct: 318 DGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCF 377

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           PN + +  ++ S    +E  K   LLR M  R ++
Sbjct: 378 PNALTYEIIIRSLFDNDENDKAENLLREMITRGLL 412



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY++++DG C    V+ AK +F  M    +  NV +YN +I+GFC     +EA  L
Sbjct: 168 PNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNL 227

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  R L  DVVT+N +++ LCK+ K+  A +L+D M   G  PD      I+ Y  L
Sbjct: 228 FEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPD------IITYSSL 281

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +D LCK  ++  A  L ++L   G+ PN+ TY I I  LC   +++ AH++F D+ VKG 
Sbjct: 282 LDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGY 341

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
                 +T ++  F  K    + + LL  M   +  P A    II+  L  N+
Sbjct: 342 NITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIIIRSLFDND 394



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 6/176 (3%)

Query: 29  EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT 88
           EG V +AK +   M  + INPN VTY+SL+ G+C  N+ N A+ +F  M  RG+ ++V +
Sbjct: 148 EGNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWS 207

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           +N++++  CK +  DEA  L + M    + PD      +V Y  LI+GLCK GK+  A +
Sbjct: 208 YNIMINGFCKIKMTDEAMNLFEEMHCRKLIPD------VVTYNSLINGLCKSGKISYALK 261

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
           L   +   G  P+++TY+  + ALC + Q+DKA  L  +++ +G+ PN   +T L+
Sbjct: 262 LVDEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILI 317



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY  +IDGLCK G ++ A  +F  +  +  N  V TY  +IHGFC     +EA  
Sbjct: 307 RPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALA 366

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           L  +M D     + +T+ +I+  L  N + D+A  LL  MI  G+
Sbjct: 367 LLSKMKDNSCFPNALTYEIIIRSLFDNDENDKAENLLREMITRGL 411



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 51/105 (48%)

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G +K A+ +   + + G+ PN VTY+  +   C   +++ A  +F  M ++GV  N   +
Sbjct: 149 GNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSY 208

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             ++  F +   T + + L   M  R ++P     + +++ L K+
Sbjct: 209 NIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKS 253


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 140/296 (47%), Gaps = 64/296 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA---NDG-- 67
           K +  TY+TIID LC++G +D A  LF +M+ + I  +VVTYNSL+ G C A   NDG  
Sbjct: 215 KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGAL 274

Query: 68  ------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                          EA  L+ EM+ RG+  +++T+N +MD  C
Sbjct: 275 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 334

Query: 98  KNRKMDEATRLLDLMIQGGVRPD---------AFCEI--------------------NIV 128
              ++ EA  +LDLM++    PD          +C +                    N V
Sbjct: 335 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 394

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G C+ GK+K A EL Q +   G++P+V+TY I +  LC++ +++KA ++F D+
Sbjct: 395 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 454

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +   +    V++TT++    +  +      L  S+  + V P     ++++  L K
Sbjct: 455 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 510



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+ ++I G C    VD   ++F  +    +  N VTY+ L+ GFC +     AE
Sbjct: 354 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 413

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G+  DV+T+ +++D LC N K+++A  + + + +  +      ++ IV Y 
Sbjct: 414 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM------DLGIVMYT 467

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++A  L  SL   G+ PNV+TY + I  LC    + +A+ L   ME  
Sbjct: 468 TIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 527

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G APN   + TL+ + +R  + +   +L+  M        AS + +++D+L+
Sbjct: 528 GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL 579



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 125/218 (57%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+NT+I GL  EG V +A  L  +M +    P+VVTYNS+++G C + D + A  
Sbjct: 145 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 204

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M +R +++DV T++ I+D LC++  +D A  L   M   G++       ++V Y  
Sbjct: 205 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS------SVVTYNS 258

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLCK GK  +   L + +    ++PNV+T+N+ +     + ++ +A++L+ +M  +G
Sbjct: 259 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 318

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++PN + + TLM  +  +N  S+   +L  M +    P
Sbjct: 319 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 356



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 130/229 (56%), Gaps = 8/229 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN+I++G+C+ G    A +L  +M++ N+  +V TY+++I   C     + A 
Sbjct: 179 CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAI 238

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G++S VVT+N ++  LCK  K ++   LL  M+   + P      N++ + 
Sbjct: 239 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP------NVITFN 292

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D   K GKL+ A EL + +   G+ PN++TYN  +   C   ++ +A+++ LD+ V+
Sbjct: 293 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM-LDLMVR 351

Query: 192 G-VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              +P+ V FT+L+  +         +++ R++ KR ++  A   SI+V
Sbjct: 352 NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 400



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V ++     + +    +   +   Q++   I  N+ T N +I+ FC       A  +
Sbjct: 76  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 135

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++M  G + D  TFN ++  L    K+ EA  L+D M++ G +PD      +V Y  +
Sbjct: 136 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPD------VVTYNSI 189

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+C+ G    A +L + +    +  +V TY+  I +LC D  +D A  LF +ME KG+
Sbjct: 190 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 249

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + V + +L+    +  + +    LL+ M  R ++P     ++++D+ VK
Sbjct: 250 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 300



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 45/222 (20%)

Query: 28  KEGFVDKAKE----LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ 83
           + G VD  K+    LF +M      P++V ++            N       ++   G+ 
Sbjct: 51  RSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIA 110

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
            ++ T N++++  C+  K   A  +L  +++ G  PD         +  LI GL   GK+
Sbjct: 111 HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT------TTFNTLIKGLFLEGKV 164

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
             A  L   +   G  P+VVTYN  ++ +C                              
Sbjct: 165 SEAVVLVDRMVENGCQPDVVTYNSIVNGIC------------------------------ 194

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
                R  +TS  ++LLR M++RNV       S I+D L ++
Sbjct: 195 -----RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRD 231



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%)

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           AE L  EM+ RG+  + +T++ ++D  CK  ++DEA ++LDLM+  G
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG 764



 Score = 41.6 bits (96), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV 86
           A+EL  +M    I PN +TY+SLI GFC  N  +EA  +   M+ +G  SD+
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG-DSDI 768



 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 21/26 (80%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELF 39
           PNT+TY+++IDG CKE  +D+A ++ 
Sbjct: 732 PNTITYSSLIDGFCKENRLDEANQML 757



 Score = 37.4 bits (85), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 35/69 (50%)

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            A EL + + + G+ PN +TY+  I   C + ++D+A+ +   M  KG +    +   LM
Sbjct: 717 TAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKGDSDIRYLLAGLM 776

Query: 205 PSFIRKNET 213
               + +ET
Sbjct: 777 RKKRKGSET 785


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 119/218 (54%), Gaps = 7/218 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN++I+GLC  G +D+AK++   +  +   PN VTYN+LI+G+C A   ++   +
Sbjct: 287 PNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKI 346

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G+  D  T+N +    C+  K   A ++L  M+  GV PD +       +  L
Sbjct: 347 LCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMY------TFNIL 400

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLC  GK+  A    + L ++  +  ++TYNI I  LC  ++++ A  LF  + +KGV
Sbjct: 401 LDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGV 460

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN-VMP 230
           +P+ + + T+M    RK    +  EL R M K + +MP
Sbjct: 461 SPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGLMP 498



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 6/234 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  +PN V YNTIID LC++G V+ A ++   MK   I P+VVTYNSLI    ++    
Sbjct: 177 GLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWG 236

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            +  +  +MM  G+  DV+TF+ ++D   K  ++ EA +  + MIQ  V P      NIV
Sbjct: 237 VSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNP------NIV 290

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI+GLC  G L  A+++   L   G  PN VTYN  I+  C  +++D    +   M
Sbjct: 291 TYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVM 350

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              GV  +   + TL   + +  + S   ++L  M    V P     +I++D L
Sbjct: 351 SRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGL 404



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+ ++++G C      +A  L  Q+      PNVV YN++I   C     N A  
Sbjct: 146 EPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALD 205

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M   G++ DVVT+N ++  L  +     + R+L  M++ G+ PD      ++ +  
Sbjct: 206 VLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPD------VITFSA 259

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G+L  A++    + +  + PN+VTYN  I+ LC    +D+A  +   +  KG
Sbjct: 260 LIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             PN V + TL+  + +       +++L  M +  V
Sbjct: 320 FFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGV 355



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A  LF  M + +  P++V ++ L+      N       LF  +   G+  D+ +F  ++D
Sbjct: 63  ALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLID 122

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             C+  ++  A   L  M++ G  P      +IV +G L++G C + +   A  L   + 
Sbjct: 123 CFCRCARLSLALSCLGKMMKLGFEP------SIVTFGSLVNGFCHVNRFYEAMSLVDQIV 176

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
             G  PNVV YN  I +LC   Q++ A D+   M+  G+ P+ V + +L+          
Sbjct: 177 GLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWG 236

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
               +L  M +  + P     S ++D+  K    L +  Q+N
Sbjct: 237 VSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYN 278


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 140/296 (47%), Gaps = 64/296 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA---NDG-- 67
           K +  TY+TIID LC++G +D A  LF +M+ + I  +VVTYNSL+ G C A   NDG  
Sbjct: 225 KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGAL 284

Query: 68  ------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                          EA  L+ EM+ RG+  +++T+N +MD  C
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 98  KNRKMDEATRLLDLMIQGGVRPD---------AFCEI--------------------NIV 128
              ++ EA  +LDLM++    PD          +C +                    N V
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G C+ GK+K A EL Q +   G++P+V+TY I +  LC++ +++KA ++F D+
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +   +    V++TT++    +  +      L  S+  + V P     ++++  L K
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 520



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 129/236 (54%), Gaps = 6/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+ ++I G C    VD   ++F  +    +  N VTY+ L+ GFC +     AE
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G+  DV+T+ +++D LC N K+++A  + + + +  +      ++ IV Y 
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM------DLGIVMYT 477

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++A  L  SL   G+ PNV+TY + I  LC    + +A+ L   ME  
Sbjct: 478 TIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 537

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           G APN   + TL+ + +R  + +   +L+  M        AS + +++D+L+  E+
Sbjct: 538 GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGEL 593



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 125/218 (57%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+NT+I GL  EG V +A  L  +M +    P+VVTYNS+++G C + D + A  
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M +R +++DV T++ I+D LC++  +D A  L   M   G++       ++V Y  
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS------SVVTYNS 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLCK GK  +   L + +    ++PNV+T+N+ +     + ++ +A++L+ +M  +G
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++PN + + TLM  +  +N  S+   +L  M +    P
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 366



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 130/229 (56%), Gaps = 8/229 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN+I++G+C+ G    A +L  +M++ N+  +V TY+++I   C     + A 
Sbjct: 189 CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAI 248

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G++S VVT+N ++  LCK  K ++   LL  M+   + P      N++ + 
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP------NVITFN 302

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D   K GKL+ A EL + +   G+ PN++TYN  +   C   ++ +A+++ LD+ V+
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM-LDLMVR 361

Query: 192 G-VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              +P+ V FT+L+  +         +++ R++ KR ++  A   SI+V
Sbjct: 362 NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V ++     + +    +   +   Q++   I  N+ T N +I+ FC       A  +
Sbjct: 86  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++M  G + D  TFN ++  L    K+ EA  L+D M++ G +PD      +V Y  +
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPD------VVTYNSI 199

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+C+ G    A +L + +    +  +V TY+  I +LC D  +D A  LF +ME KG+
Sbjct: 200 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + V + +L+    +  + +    LL+ M  R ++P     ++++D+ VK
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 45/222 (20%)

Query: 28  KEGFVDKAKE----LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ 83
           + G VD  K+    LF +M      P++V ++            N       ++   G+ 
Sbjct: 61  RSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIA 120

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
            ++ T N++++  C+  K   A  +L  +++ G  PD         +  LI GL   GK+
Sbjct: 121 HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT------TTFNTLIKGLFLEGKV 174

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
             A  L   +   G  P+VVTYN  ++ +C                              
Sbjct: 175 SEAVVLVDRMVENGCQPDVVTYNSIVNGIC------------------------------ 204

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
                R  +TS  ++LLR M++RNV       S I+D L ++
Sbjct: 205 -----RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRD 241


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 132/247 (53%), Gaps = 14/247 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+V  P+  TY  +ID  CK G + +A+  F +M  +N  PNVVTY SLIH +  A    
Sbjct: 483 GIV--PSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVF 540

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------- 119
           +A  LF  M+  G + +VVT+  ++D  CK  ++D+A ++   M QG +           
Sbjct: 541 DANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARM-QGDIESSDIDMYFKL 599

Query: 120 -DAFCEI-NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
            D  CE  NI+ YG L+DGLCK  +++ A EL  +++  G  PN + Y+  I   C   +
Sbjct: 600 DDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGK 659

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           ++ A ++F+ M  +G  PN   +++L+ S  ++     V+++L  M + +  P   I + 
Sbjct: 660 LENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTD 719

Query: 238 IVDLLVK 244
           ++D L K
Sbjct: 720 MIDGLCK 726



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 127/250 (50%), Gaps = 16/250 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY  ++DGLCK   V++A EL   M      PN + Y++LI GFC       A+ +
Sbjct: 607 PNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEV 666

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F++M +RG   ++ T++ +++ L K +++D   ++L  M++    P      N+V Y  +
Sbjct: 667 FVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTP------NVVIYTDM 720

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK+GK + A  L   +   G  PNV+TY   I       ++++  +L+ DM  KG 
Sbjct: 721 IDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGC 780

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASIL-----SIIVDLLVK 244
           APN + +  L+          +   LL  M +    R++  Y  I+       I  + + 
Sbjct: 781 APNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLL 840

Query: 245 NEISLN-SIP 253
           +E+S N S+P
Sbjct: 841 DELSENESVP 850



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 6/236 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +R   + C PN VTY  ++ G   +G + + K +   M  E   PN   +NSL+H +C +
Sbjct: 296 DRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKS 355

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-DAFC 123
            D + A  LF +M+  G Q   + +N+ +  +C N ++   + LL+L  +      D   
Sbjct: 356 RDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEEL-PGSDLLELAEKAYSEMLDLGV 414

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            +N V        LC  GK   A E+   +   G +P+  TY+  I  LC+  +++KA  
Sbjct: 415 VLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFL 474

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIR----KNETSKVIELLRSMDKRNVMPYASIL 235
           LF +M+  G+ P+   +T L+ SF +    +   +   E+LR     NV+ Y S++
Sbjct: 475 LFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLI 530



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 33/243 (13%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  +IDGLCK G  ++A  L L+M++    PNV+TY ++I GF       +  
Sbjct: 710 CTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCL 769

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG--------------GV 117
            L+ +M  +G   + +T+ V+++  C    +DEA RLLD M Q               G 
Sbjct: 770 ELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGF 829

Query: 118 RPDAFCEINIV-------------AYGCLIDGLCKIGKLKNA----RELSQSLTRAGLMP 160
             +    I ++              Y  LID   K G+L+ A     E+S S + A  + 
Sbjct: 830 NREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLA--VA 887

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           N   Y   I +L +  ++DKA +L+  M  K V P    F  L+    R  +  + ++L 
Sbjct: 888 NKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLS 947

Query: 221 RSM 223
            S+
Sbjct: 948 DSI 950



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +I   C+ G  + A E   ++KD     +  TYN+LI  F  A+  + A  +  EM +
Sbjct: 174 NFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSN 233

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G + D  T       LCK  +  +A  LL+   +    PD       V Y  ++ GLC+
Sbjct: 234 SGFRMDGCTLGCFAYSLCKAGRCGDALSLLE---KEEFVPDT------VFYNRMVSGLCE 284

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A ++   +     +PNVVTY I +       Q+ +   +   M  +G  PN  +
Sbjct: 285 ASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREM 344

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           F +L+ ++ +  + S   +L + M K    P   + +I +  +  NE
Sbjct: 345 FNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNE 391


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 6/190 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P++ TY T+I+GLCK G + +AKEL  +M+++ ++P+VV+Y SLIHG C +N+ +EA 
Sbjct: 187 CQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAI 246

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+  G++ +V T++ +MD LCK+    +A  LL++M++  + P      N+V Y 
Sbjct: 247 ELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLP------NMVTYS 300

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK GK + A E+   +   GL P+   Y   I  LC      +A +   +M + 
Sbjct: 301 TLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALG 360

Query: 192 GVAPNCVIFT 201
           G++PN   +T
Sbjct: 361 GISPNRASWT 370



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A  +F +M+D  + P   +Y ++       N    A   + EM ++G+   VV+ N+++ 
Sbjct: 104 AIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIK 163

Query: 95  ELCKNRK-MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
            LCKN + ++ A RL   M   G +PD++       YG LI+GLCK+GK+  A+EL   +
Sbjct: 164 ALCKNEETVESAFRLFREMPNRGCQPDSY------TYGTLINGLCKLGKISQAKELLDEM 217

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              GL P+VV+Y   IH LC    +D+A +L  +M + G+ PN   +++LM    +   +
Sbjct: 218 EEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHS 277

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           S+ +ELL  M +R ++P     S +++ L K      ++   +R +
Sbjct: 278 SQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMR 323



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 112/203 (55%), Gaps = 9/203 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           RE G+   P  V+ N +I  LCK E  V+ A  LF +M +    P+  TY +LI+G C  
Sbjct: 147 REKGI--PPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKL 204

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++A+ L  EM ++GL   VV++  ++  LC++  +DEA  LL+ MI  G+ P     
Sbjct: 205 GKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEP----- 259

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+  Y  L+DGLCK G    A EL + + R  L+PN+VTY+  I+ LC + +  +A ++
Sbjct: 260 -NVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEI 318

Query: 185 FLDMEVKGVAPNCVIFTTLMPSF 207
              M ++G+ P+  ++  ++   
Sbjct: 319 LDRMRLQGLKPDAGMYGRIISGL 341



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 7/231 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   +Y T+ D L +E  V +A   + +M+++ I P VV+ N LI   C   +  E+ +
Sbjct: 117 KPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAF 176

Query: 73  -LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM +RG Q D  T+  +++ LCK  K+ +A  LLD M + G+ P      ++V+Y 
Sbjct: 177 RLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSP------SVVSYT 230

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLC+   L  A EL + +   G+ PNV TY+  +  LC      +A +L   M  +
Sbjct: 231 SLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRR 290

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            + PN V ++TL+    ++ +  + +E+L  M  + + P A +   I+  L
Sbjct: 291 RLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGL 341



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 36/210 (17%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY++++DGLCK G   +A EL   M    + PN+VTY++LI+G C      EA  
Sbjct: 258 EPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVE 317

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------ 120
           +   M  +GL+ D   +  I+  LC      EA   +D M  GG+ P+            
Sbjct: 318 ILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHN 377

Query: 121 ----AFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                 C                     + I  + CL+   CK G L  A  + + +   
Sbjct: 378 MVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILD 437

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           G +P+   +N+ +  L + +++ +  +L +
Sbjct: 438 GCIPDEGMWNVLMCGLWDRKKVRETTELLV 467



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 104/229 (45%), Gaps = 7/229 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T+  +I  L        A+ +  +MK E+       + ++  G+   +   +A  +F +M
Sbjct: 52  TFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKM 111

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            D  ++    ++  + D L +   +  A      M + G+ P       +V+   LI  L
Sbjct: 112 EDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPP------TVVSLNILIKAL 165

Query: 138 CKIGK-LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           CK  + +++A  L + +   G  P+  TY   I+ LC   ++ +A +L  +ME KG++P+
Sbjct: 166 CKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPS 225

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V +T+L+    + N   + IELL  M    + P     S ++D L K+
Sbjct: 226 VVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKS 274


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 140/296 (47%), Gaps = 64/296 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA---NDG-- 67
           K +  TY+TIID LC++G +D A  LF +M+ + I  +VVTYNSL+ G C A   NDG  
Sbjct: 225 KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGAL 284

Query: 68  ------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                          EA  L+ EM+ RG+  +++T+N +MD  C
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 98  KNRKMDEATRLLDLMIQGGVRPD---------AFCEI--------------------NIV 128
              ++ EA  +LDLM++    PD          +C +                    N V
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G C+ GK+K A EL Q +   G++P+V+TY I +  LC++ +++KA ++F D+
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +   +    V++TT++    +  +      L  S+  + V P     ++++  L K
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 520



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 129/236 (54%), Gaps = 6/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+ ++I G C    VD   ++F  +    +  N VTY+ L+ GFC +     AE
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G+  DV+T+ +++D LC N K+++A  + + + +  +      ++ IV Y 
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM------DLGIVMYT 477

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++A  L  SL   G+ PNV+TY + I  LC    + +A+ L   ME  
Sbjct: 478 TIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 537

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           G APN   + TL+ + +R  + +   +L+  M        AS + +++D+L+  E+
Sbjct: 538 GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGEL 593



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 127/218 (58%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+NT+I+GLC EG V KA  L  +M +    P++VTYNS+++G C + D + A  
Sbjct: 155 EPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFD 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M +R +++DV T++ I+D LC++  +D A  L   M   G++       ++V Y  
Sbjct: 215 MLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS------SVVTYNS 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLCK GK  +   L + +    ++PNV+T+N+ +     + ++ +A++L+ +M  +G
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++PN + + TLM  +  +N  S+   +L  M +    P
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 366



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V ++     + +    +   +   Q++   I  N+ T N +I+ FC       A  +
Sbjct: 86  PGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++M  G + D  TFN +++ LC   K+ +A  L+D M++ G +PD      +V Y  +
Sbjct: 146 LGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPD------MVTYNSI 199

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+C+ G    A ++ + +    +  +V TY+  I +LC D  +D A  LF +ME KG+
Sbjct: 200 VNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + V + +L+    +  + +    LL+ M  R ++P     ++++D+ VK
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           NI     +I+  C+  K   A  +   + + G  P+  T+N  I+ LC + ++ KA  L 
Sbjct: 122 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLV 181

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M   G  P+ V + +++    R  +TS   ++LR M++RNV       S I+D L ++
Sbjct: 182 DRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRD 241


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN + +N I+D LCKEG   +A      M+   ++P +VTYN LI GFC     + A 
Sbjct: 41  CFPNALVFNGIMDALCKEGRSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRAL 100

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM  RG + + VT+N  +  LCK  K+D+A  L   M +  +R D +       Y 
Sbjct: 101 EILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVY------GYT 154

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLC+ GKL  A  L   +  +G +P    YN  +  LC   ++++AH LF  M   
Sbjct: 155 TLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGS 214

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G+ P+ + F  ++  + R +     + LL+ M    + P   I + ++D L
Sbjct: 215 GILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDAL 265



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  GV   P  VTYN +IDG CKE  + +A E+  +M      PN VTYN+ +HG C   
Sbjct: 72  RSMGV--SPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYG 129

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++A  LF  M ++ ++ DV  +  ++D LC+  K+ EA  LLD M   G  P   C  
Sbjct: 130 KVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC-- 187

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y  ++  LCK  ++  A +L + +T +G++P+ +T+ + +   C   ++D A  L 
Sbjct: 188 ----YNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLL 243

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
             M+  G+AP  VI+ TL+ +  R    S+   LL+ M  R + P +   +++
Sbjct: 244 QQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 104/201 (51%), Gaps = 11/201 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYNT + GLCK G VD A  LF  M ++ I  +V  Y +LI G C A    EA  
Sbjct: 112 EPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYS 171

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM + G       +N I+  LCK  +++EA +L   M   G+ PD       + +G 
Sbjct: 172 LLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPD------WLTFGM 225

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ G C+  ++ +A  L Q +  AGL P  V YN  I AL    ++ +A+ L  +M  +G
Sbjct: 226 MVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRG 285

Query: 193 VAPNCVIFTTLMPSFIRKNET 213
           ++PN   +     + +RK +T
Sbjct: 286 LSPNSRTY-----ALMRKQQT 301



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 98/204 (48%), Gaps = 6/204 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M ++   P VVT+  L+ G C AN   +A  L   M +RG   + + FN IMD LCK  +
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
             EA   ++ M   GV P       IV Y  LIDG CK  KL  A E+ Q +T  G  PN
Sbjct: 61  SAEAYGFIETMRSMGVSP------TIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPN 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
            VTYN  +H LC   ++D A  LF  M  K +  +   +TTL+    +  + ++   LL 
Sbjct: 115 HVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLD 174

Query: 222 SMDKRNVMPYASILSIIVDLLVKN 245
            M+    +P     + I+  L K 
Sbjct: 175 EMENSGCVPKPGCYNAILSWLCKG 198



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 45/94 (47%)

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G +P VVT+ I +  LC   ++  A +L   M  +G  PN ++F  +M +  ++  
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +++    + +M    V P     ++++D   K E
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEE 94


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 140/296 (47%), Gaps = 64/296 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA---NDG-- 67
           K +  TY+TIID LC++G +D A  LF +M+ + I  +VVTYNSL+ G C A   NDG  
Sbjct: 225 KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGAL 284

Query: 68  ------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                          EA  L+ EM+ RG+  +++T+N +MD  C
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 98  KNRKMDEATRLLDLMIQGGVRPD---------AFCEI--------------------NIV 128
              ++ EA  +LDLM++    PD          +C +                    N V
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G C+ GK+K A EL Q +   G++P+V+TY I +  LC++ +++KA ++F D+
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +   +    V++TT++    +  +      L  S+  + V P     ++++  L K
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 520



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+ ++I G C    VD   ++F  +    +  N VTY+ L+ GFC +     AE
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+  G+  DV+T+ +++D LC N K+++A  + + + +  +      ++ IV Y 
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM------DLGIVMYT 477

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+++A  L  SL   G+ PNV+TY + I  LC    + +A+ L   ME  
Sbjct: 478 TIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 537

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G APN   + TL+ + +R  + +   +L+  M        AS + +++D+L+
Sbjct: 538 GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL 589



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 125/218 (57%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+NT+I GL  EG V +A  L  +M +    P+VVTYNS+++G C + D + A  
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M +R +++DV T++ I+D LC++  +D A  L   M   G++       ++V Y  
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS------SVVTYNS 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLCK GK  +   L + +    ++PNV+T+N+ +     + ++ +A++L+ +M  +G
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++PN + + TLM  +  +N  S+   +L  M +    P
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 366



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 130/229 (56%), Gaps = 8/229 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN+I++G+C+ G    A +L  +M++ N+  +V TY+++I   C     + A 
Sbjct: 189 CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAI 248

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G++S VVT+N ++  LCK  K ++   LL  M+   + P      N++ + 
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP------NVITFN 302

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D   K GKL+ A EL + +   G+ PN++TYN  +   C   ++ +A+++ LD+ V+
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM-LDLMVR 361

Query: 192 G-VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              +P+ V FT+L+  +         +++ R++ KR ++  A   SI+V
Sbjct: 362 NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILV 410



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V ++     + +    +   +   Q++   I  N+ T N +I+ FC       A  +
Sbjct: 86  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++M  G + D  TFN ++  L    K+ EA  L+D M++ G +PD      +V Y  +
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPD------VVTYNSI 199

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+C+ G    A +L + +    +  +V TY+  I +LC D  +D A  LF +ME KG+
Sbjct: 200 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + V + +L+    +  + +    LL+ M  R ++P     ++++D+ VK
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 45/222 (20%)

Query: 28  KEGFVDKAKE----LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ 83
           + G VD  K+    LF +M      P++V ++            N       ++   G+ 
Sbjct: 61  RSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIA 120

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
            ++ T N++++  C+  K   A  +L  +++ G  PD         +  LI GL   GK+
Sbjct: 121 HNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT------TTFNTLIKGLFLEGKV 174

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
             A  L   +   G  P+VVTYN  ++ +C                              
Sbjct: 175 SEAVVLVDRMVENGCQPDVVTYNSIVNGIC------------------------------ 204

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
                R  +TS  ++LLR M++RNV       S I+D L ++
Sbjct: 205 -----RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRD 241


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+ T+I GLC EG + +A  LF +M DE   PNVVTY +LI+G C   + + A  
Sbjct: 112 QPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIR 171

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M     Q DVV +  I+D LCK+R++ EA  L   M+  G+ PD F       Y  
Sbjct: 172 LLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIF------TYTS 225

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  LC + + K+   L   +  + ++P+VV ++  + ALC + ++ +AH++   M  +G
Sbjct: 226 LVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRG 285

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V P+ V +TTLM     ++E  + +++   M ++   P
Sbjct: 286 VEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAP 323



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 6/244 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +++ NR   +   P+ V +  ++  + K         L  QM    + PNV T N LI+ 
Sbjct: 30  LSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINS 89

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+ N    A  +  +++  G Q D  TF  ++  LC   K+ EA  L D MI  G +P 
Sbjct: 90  FCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQP- 148

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V YG LI+GLCK+G    A  L +S+ +    P+VV Y   I +LC D Q+ +
Sbjct: 149 -----NVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTE 203

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A +LF  M  +G++P+   +T+L+ +     E   V  LL  M    ++P   I S +VD
Sbjct: 204 AFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 263

Query: 241 LLVK 244
            L K
Sbjct: 264 ALCK 267



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 123/255 (48%), Gaps = 40/255 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ V Y +IID LCK+  V +A  LF QM  + I+P++ TY SL+H  C   +     
Sbjct: 181 CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVT 240

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M++  +  DVV F+ ++D LCK  K+ EA  ++D+MIQ GV PD      +V Y 
Sbjct: 241 TLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPD------VVTYT 294

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND---------------- 175
            L+DG C   ++  A ++   + R G  P+V++Y   I+A   D                
Sbjct: 295 TLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKE 354

Query: 176 ------------------EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
                             +  +K   L  +M    + PN VIF+T++ +  ++ +  +  
Sbjct: 355 TPDAVKGGAVEVIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAH 414

Query: 218 ELLRSMDKRNVMPYA 232
           +++  M KR V P A
Sbjct: 415 DVVDMMIKRGVEPNA 429



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 6/184 (3%)

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
           + N  ++A   F  ++       +V F  ++  + K +       L   M   GV P   
Sbjct: 22  HFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPP--- 78

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+     LI+  C + ++  A  +   + + G  P+  T+   I  LC + ++ +A 
Sbjct: 79  ---NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEAL 135

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF  M  +G  PN V + TL+    +   TS  I LLRSM++ N  P   I + I+D L
Sbjct: 136 HLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 195

Query: 243 VKNE 246
            K+ 
Sbjct: 196 CKDR 199


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 126/237 (53%), Gaps = 6/237 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C PN V Y+T+IDG C  G +D+A+ +F  M  +   PNV TY SL++G+C      E
Sbjct: 196 VGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEE 255

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  E + +GL  D+VTF  I+  LC+  +   A +L   +   G  P      NI+ 
Sbjct: 256 AVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTP------NIMT 309

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           YG L+DGLCK G L+ A  L Q + R+ + PN+V Y I I +LC   ++    +LF  + 
Sbjct: 310 YGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLI 369

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +G+ PN   +T L+ +  ++    +  +L R M++    P     ++I+   ++++
Sbjct: 370 DEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHK 426



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 127/245 (51%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TYN II+ L K G  ++A     QM+     PNVV Y++LI G+C     +EA  
Sbjct: 164 QPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARS 223

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M+ +G   +V T+  +M+  CK  +++EA +LLD  ++ G+ PD      IV +  
Sbjct: 224 VFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPD------IVTFTT 277

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLC+ G+   A++L + +   G  PN++TY + +  LC    +++A  LF +M+   
Sbjct: 278 IISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRST 337

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           V PN VI+T L+ S  +  +     EL   +    + P     + +V  L K  + + + 
Sbjct: 338 VKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAH 397

Query: 253 PQFNR 257
             F +
Sbjct: 398 KLFRK 402



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+ T+++GLC EG +D+   L+  M    + PNV TYN +I+    +   NEA  
Sbjct: 129 EPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALG 188

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +M   G   +VV ++ ++D  C   +MDEA  + DLM+  G  P      N+  Y  
Sbjct: 189 FLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTP------NVYTYTS 242

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G CKI +++ A +L     R GL+P++VT+   I  LC   +   A  LF  +   G
Sbjct: 243 LMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHG 302

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             PN + +  L+    +     +   L + M +  V P   I +I++D L K
Sbjct: 303 HTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCK 354



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           + + +I+  C    VD    +  ++    + P++VT+ +L++G C     ++   L+ +M
Sbjct: 99  SLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDM 158

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           + RGLQ +V T+NVI++ L K+ K +EA   L  M + G  P      N+V Y  LIDG 
Sbjct: 159 LVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVP------NVVNYSTLIDGY 212

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G++  AR +   +   G  PNV TY   ++  C  E++++A  L  +   KG+ P+ 
Sbjct: 213 CLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDI 272

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V FTT++    R        +L R +      P      +++D L K+
Sbjct: 273 VTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKH 320



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 112/231 (48%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V ++ +   + + G  +    L  +++   I  ++ + + LI+ FC+ +  +    +
Sbjct: 60  PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  GL+  +VTF  +++ LC   KMD+   L D M+  G++P      N+  Y  +
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQP------NVYTYNVI 173

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ L K GK   A    + + + G +PNVV Y+  I   C   QMD+A  +F  M  KG 
Sbjct: 174 INSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGC 233

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN   +T+LM  + +     + ++LL    ++ ++P     + I+  L +
Sbjct: 234 TPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCR 284



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 11/162 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY  ++DGLCK G +++A  LF +M+   + PN+V Y  LI   C      + + L
Sbjct: 305 PNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKEL 364

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  ++D GL+ +V T+  ++  LCK   + EA +L   M + G  PD        AY  +
Sbjct: 365 FSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDK------CAYNVI 418

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           I G  +      AR+L + +   G   +  T      AL ND
Sbjct: 419 IQGFLQHKDPSMARQLVEEMVNRGFSADAAT-----RALLND 455


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN     T++ GLCKEG    A EL+ ++ ++    N+VT N+LIHG C   +  EA  
Sbjct: 453 RPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVR 512

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++RG   D +T+N ++   CK  K++E  +L   M++ G+ PD F       Y  
Sbjct: 513 LLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTF------TYNL 566

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G+C+IGKL  A  L        L+PNV TY + I   C  +++++   LF ++  + 
Sbjct: 567 LIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN 626

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +  N V++ TL+ ++ R   T +  +L   M  + + P  +  S ++
Sbjct: 627 LELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 673



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 118/218 (54%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T TYN +I G+C+ G +D+A  L+ + K  ++ PNV TY  +I G+C A+   E E 
Sbjct: 558 EPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEK 617

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF E++ + L+ + V +N ++   C+N    EA +L D M   G+ P          Y  
Sbjct: 618 LFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTT------ATYSS 671

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G+C IG++++A+ L   + + GL+PNVV Y   I   C   QMDK  ++  +M    
Sbjct: 672 LIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYD 731

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN + +T ++  + +  +     +LL  M  + ++P
Sbjct: 732 IHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVP 769



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   ++T I+  CK G V+ A +LF  M+   ++PNVVTYN+LIHG C   + +EA   
Sbjct: 244 PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRF 303

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G+ + ++T++V+++ L K  K +EA  +L   ++ G  P      N V Y  L
Sbjct: 304 KEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTP------NEVVYNTL 357

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK+G L +A  +   +   G+ PN VT N  I   C   QM++A  +  +M  +G 
Sbjct: 358 IDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGF 417

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + N   FTT++      +     +  LR M  RN+ P   +L+ +V  L K
Sbjct: 418 SINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCK 468



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +TYNT+I G CKEG V++  +L  +M  + I P+  TYN LIHG C     +EA  L+ E
Sbjct: 527 ITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNE 586

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLID 135
              R L  +V T+ V++D  CK  K++E  +L  +L+ Q         E+N V Y  LI 
Sbjct: 587 CKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN-------LELNSVVYNTLIR 639

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
             C+ G    A +L   +   G+ P   TY+  IH +CN  +M+ A  L  +M  +G+ P
Sbjct: 640 AYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLP 699

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           N V +T L+  + +  +  KV+ +L+ M   ++ P     ++++D
Sbjct: 700 NVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMID 744



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V YNT+IDG CK G +  A  +   M  + INPN VT NS+I GFC      +AE +
Sbjct: 349 PNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECI 408

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ RG   +   F  I+  LC N + + A R L  M+   +RP      N      L
Sbjct: 409 LEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRP------NDGLLTTL 462

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK GK  +A EL   L   G   N+VT N  IH LC    M +A  L   M  +G 
Sbjct: 463 VGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 522

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             + + + TL+    ++ +  +  +L   M K+ + P
Sbjct: 523 VLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEP 559



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 7/213 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN +I GLCK G +D+A     +M  + +N  ++TY+ LI+G       NEA  +
Sbjct: 279 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSV 338

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E +++G   + V +N ++D  CK   + +A R+   M+  G+ P      N V    +
Sbjct: 339 LKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINP------NSVTLNSI 392

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CKIG+++ A  + + +   G   N   +   IH LC + + + A     +M ++ +
Sbjct: 393 IQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNM 452

Query: 194 APNCVIFTTLMPSFIRKNETSKVIEL-LRSMDK 225
            PN  + TTL+    ++ + S  +EL  R ++K
Sbjct: 453 RPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK 485



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 108/215 (50%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +IDG CK   +++ ++LF ++  +N+  N V YN+LI  +C   +  EA  L
Sbjct: 594 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 653

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M  +G+     T++ ++  +C   +M++A  L+D M + G+ P      N+V Y  L
Sbjct: 654 HDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLP------NVVCYTAL 707

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK+G++     + Q ++   + PN +TY + I        M  A  L  +M  KG+
Sbjct: 708 IGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGI 767

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            P+ V +  L   F ++ +  +  ++   M +  +
Sbjct: 768 VPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGL 802



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 6/193 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N+V YNT+I   C+ G   +A +L   M+ + I P   TY+SLIHG C      +A+ L 
Sbjct: 630 NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLI 689

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM   GL  +VV +  ++   CK  +MD+   +L  M    + P      N + Y  +I
Sbjct: 690 DEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHP------NKITYTVMI 743

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G +K A +L   +   G++P+ VTYN+  +  C + ++++   +   M  +G+ 
Sbjct: 744 DGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLP 803

Query: 195 PNCVIFTTLMPSF 207
            + + +TTL+  +
Sbjct: 804 LDEITYTTLVHGW 816



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 6/214 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   + TII  LC     + A     +M   N+ PN     +L+ G C     ++A  L+
Sbjct: 420 NPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELW 479

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             ++++G  +++VT N ++  LCK   M EA RLL  M++ G   D       + Y  LI
Sbjct: 480 FRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK------ITYNTLI 533

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G CK GK++   +L   + + G+ P+  TYN+ IH +C   ++D+A +L+ + + + + 
Sbjct: 534 SGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV 593

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           PN   +  ++  + + ++  +  +L   +  +N+
Sbjct: 594 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNL 627



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T TY+++I G+C  G ++ AK L  +M+ E + PNVV Y +LI G+C     ++   +
Sbjct: 664 PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 723

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM    +  + +T+ V++D   K+  M  A +LL  M+  G+ PD       V Y  L
Sbjct: 724 LQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDT------VTYNVL 777

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            +G CK GK++   ++   +++ GL  + +TY   +H  
Sbjct: 778 TNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGW 816



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 6/132 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y  +I G CK G +DK   +  +M   +I+PN +TY  +I G+  + D   A  L
Sbjct: 699 PNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKL 758

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +G+  D VT+NV+ +  CK  K++E  ++ D M Q G+  D       + Y  L
Sbjct: 759 LHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDE------ITYTTL 812

Query: 134 IDGLCKIGKLKN 145
           + G  +   L N
Sbjct: 813 VHGWQQPSALTN 824



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L K  +L+ +  + +++ R G+ P+V  ++  I+A C   +++ A  LF DME  G
Sbjct: 218 LLSSLVKANELEKSYWVFETM-RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 276

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           V+PN V +  L+    +     +       M K  V       S++++ L+K E
Sbjct: 277 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLE 330



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A  L I ++DR L        V+  +  KNR ++ A+ + DL   G         + +
Sbjct: 129 SPARLLLIRLIDRKLP-------VLFGDP-KNRHIEIASAMADLNEVGE------SGVAV 174

Query: 128 VAYGCLIDGLCKIGK---LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            A   LI   C   +    +NA  + + L   G+ P V T    + +L    +++K++ +
Sbjct: 175 AAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWV 234

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           F  M  +GV+P+  +F+T + +F +  +    I+L   M+K  V P
Sbjct: 235 FETMR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSP 279


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 117/216 (54%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYNT+I G C  G + +A  L  +MK +NINP+V T+N LI         +EA  L
Sbjct: 266 PNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISL 325

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  + +  ++VT+  ++D LCKN  ++ A  L   M + G++PD +      +Y  L
Sbjct: 326 FEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVY------SYTIL 379

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +D LCK G+L+NA++  Q L   G   NV TYN+ I+ LC         DL   ME KG 
Sbjct: 380 LDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGC 439

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            P+ + F T++ +   K+E  K  + LR M  R ++
Sbjct: 440 MPDAITFKTIICALFEKDENDKAEKFLREMIARGLL 475



 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 125/239 (52%), Gaps = 7/239 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   KP+ V Y TII  LCK   V  A +L+ +M  + I+PNV TYN+LI+GFC   +  
Sbjct: 226 GHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLK 285

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM  + +  DV TFN+++D L K  K+DEA  L + M    + P      NIV
Sbjct: 286 EAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFP------NIV 339

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LIDGLCK   L+ A  L + +   G+ P+V +Y I + ALC   +++ A   F  +
Sbjct: 340 TYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHL 399

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA-SILSIIVDLLVKNE 246
            VKG   N   +  ++    +      V++L   M+ +  MP A +  +II  L  K+E
Sbjct: 400 LVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDE 458



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 6/259 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +A+ NR   +   P T  ++ I+  L K         LF Q +   + PN+ T N LI+ 
Sbjct: 78  VASFNRMLLMRPPPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINC 137

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC+      A  +F  ++ RG   D +T N ++  LC   ++  A    D ++  G + D
Sbjct: 138 FCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLD 197

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  V+YG LI+GLCK G+ K    L + L    + P+VV Y   IH LC ++++  
Sbjct: 198 Q------VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGD 251

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A DL+ +M VKG++PN   + TL+  F       +   LL  M  +N+ P     +I++D
Sbjct: 252 ACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILID 311

Query: 241 LLVKNEISLNSIPQFNRQK 259
            L K      +I  F   K
Sbjct: 312 ALGKEGKIDEAISLFEEMK 330



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 56/105 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  +Y  ++D LCK G ++ AK+ F  +  +  + NV TYN +I+G C A    +   
Sbjct: 370 QPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMD 429

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           L  +M  +G   D +TF  I+  L +  + D+A + L  MI  G+
Sbjct: 430 LKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARGL 474


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNTI+  LC  G + +A E+  +M   +  P+V+TY  LI   C  +   +A  L
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKL 261

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG   DVVT+NV+++ +CK  ++DEA + L+ M      P + C+ N++ +  +
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM------PSSGCQPNVITHNII 315

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  +C  G+  +A +L   + R G  P+VVT+NI I+ LC    + +A D+   M   G 
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGC 375

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + +  L+  F ++ +  + IE L  M  R   P
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYP 412



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN +++G+CKEG +D+A +    M      PNV+T+N ++   C      +AE
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE 329

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +G    VVTFN++++ LC+   +  A  +L+ M      P   C+ N ++Y 
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM------PKHGCQPNSLSYN 383

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G CK  K+  A E  + +   G  P++VTYN  + ALC D +++ A ++   +  K
Sbjct: 384 PLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSK 443

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G +P  + + T++    +  +T K I+LL  M  +++ P     S +V  L +
Sbjct: 444 GCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 6/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N +I+ LC++G + +A ++  +M      PN ++YN L+HGFC     + A   
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ RG   D+VT+N ++  LCK+ K+++A  +L+ +   G  P       ++ Y  +
Sbjct: 402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP------VLITYNTV 455

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGL K GK   A +L   +    L P+ +TY+  +  L  + ++D+A   F + E  GV
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGV 515

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN V F ++M    +  +T + I+ L  M  R   P  +  +I+++ L    ++  ++ 
Sbjct: 516 RPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALE 575

Query: 254 QFN 256
             N
Sbjct: 576 LLN 578



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY  +I+  C++  V +A +L  +M+D    P+VVTYN L++G C     +EA 
Sbjct: 235 CYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               +M   G Q +V+T N+I+  +C   +  +A +LL  M++ G  P      ++V + 
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP------SVVTFN 348

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+ LC+ G L  A ++ + + + G  PN ++YN  +H  C +++MD+A +    M  +
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V + T++ +  +  +    +E+L  +  +   P     + ++D L K
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 117/217 (53%), Gaps = 9/217 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +I G CK G ++ A  +  +M   +++P+VVTYN+++   C +    +A  +
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ R    DV+T+ ++++  C++  + +A +LLD M   G  PD      +V Y  L
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPD------VVTYNVL 280

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G+CK G+L  A +    +  +G  PNV+T+NI + ++C+  +   A  L  DM  KG 
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +P+ V F  L+    RK    + I++L  M K    P
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQP 377



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 6/222 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN+++YN ++ G CKE  +D+A E   +M      P++VTYN+++   C      +A 
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  ++  +G    ++T+N ++D L K  K  +A +LLD M    ++PD       + Y 
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDT------ITYS 488

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GL + GK+  A +      R G+ PN VT+N  +  LC   Q D+A D  + M  +
Sbjct: 489 SLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINR 548

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           G  P    +T L+     +    + +ELL  +  + +M  +S
Sbjct: 549 GCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMKRSS 590



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 12/241 (4%)

Query: 2   ANGNREFGVVCKP---NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI 58
           +NGN  F           V  N  +  L + G +++  +    M      P+++   +LI
Sbjct: 85  SNGNGHFSSANSSFVLEDVESNNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLI 144

Query: 59  HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
            GFC      +A  +   +   G   DV+T+NV++   CK  +++ A  +LD M    V 
Sbjct: 145 RGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVS 201

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           PD      +V Y  ++  LC  GKLK A E+   + +    P+V+TY I I A C D  +
Sbjct: 202 PD------VVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGV 255

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            +A  L  +M  +G  P+ V +  L+    ++    + I+ L  M      P     +II
Sbjct: 256 GQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315

Query: 239 V 239
           +
Sbjct: 316 L 316



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 89/177 (50%), Gaps = 10/177 (5%)

Query: 69  EAEYLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           E  + F+E M+  G   D++    ++   C+  K  +A ++L+++   G  PD      +
Sbjct: 119 EEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPD------V 172

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + Y  +I G CK G++ NA  +   L R  + P+VVTYN  + +LC+  ++ +A ++   
Sbjct: 173 ITYNVMISGYCKAGEINNALSV---LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M  +   P+ + +T L+ +  R +   + ++LL  M  R   P     +++V+ + K
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 135/256 (52%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+++G CK G +  AK+L  ++   N+ PNV+TY +LI  +C +    +A Y+
Sbjct: 50  PDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYM 109

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
           + EM  + L  DVVT+  IM+ LCK+ K++EA  +   M + GV P+ F           
Sbjct: 110 YDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFK 169

Query: 124 -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                ++V Y  L+DGL K G   NA ++ Q L    L+PN VT
Sbjct: 170 EGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVT 229

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+  I   C    ++K   L  +ME K + PN +++++++  + +K   ++ ++++R M 
Sbjct: 230 YSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMV 289

Query: 225 KRNVMPYASILSIIVD 240
           +RN++P   +   ++D
Sbjct: 290 QRNILPNVFVYGTLID 305



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 126/248 (50%), Gaps = 18/248 (7%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  K +  TYNT+I   C+ G + +A  +F  M  + I  +++TYN+LIHG+C ++   
Sbjct: 534 GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLK 593

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +  +M+  G+  +V T+N+++  L   R + EA  L++ M + G+ P+A       
Sbjct: 594 KAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNA------T 647

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G  KIG +K   +L   +   G +P   TYN+ I      ++M +A +L  +M
Sbjct: 648 TYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEM 707

Query: 189 EVKGVAPNCVIFTTLMPSF------------IRKNETSKVIELLRSMDKRNVMPYASILS 236
           +V+G+ PN   +  L+  +            ++++  ++   L   M+++  +P  + L+
Sbjct: 708 QVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLA 767

Query: 237 IIVDLLVK 244
            I   L K
Sbjct: 768 CISFTLAK 775



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 10/217 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  I++GLCK G V++AK +F +M++  + PN  +Y +LI       +GN AE  
Sbjct: 120 PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLF--KEGNVAEAF 177

Query: 74  FIE--MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++  M+ RG+  DVV +  +MD L K    + A  +  ++++  + P      N V Y 
Sbjct: 178 VLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVP------NCVTYS 231

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK+G +     L Q +    + PNV+ Y+  +        +++A D+   M  +
Sbjct: 232 ALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQR 291

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            + PN  ++ TL+  + + ++    ++L + M  R +
Sbjct: 292 NILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGL 328



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 113/237 (47%), Gaps = 8/237 (3%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G R+ G+   P++ T+NT+I+  CKEG +  A +L  +MK   + PN +T N L+   C 
Sbjct: 426 GMRQLGLA--PDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCA 483

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           A +  +   L  +M+  G      T   ++D   K+R+ D      D ++  GV+ D   
Sbjct: 484 AGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLD--- 540

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
              +  Y  LI   C++G ++ A  + + +   G++ +++TYN  IH  C    + KA  
Sbjct: 541 ---LSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFA 597

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +   M  +GV+PN   +  L+          +   L+  M +R ++P A+   I+V 
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVS 654



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 7/229 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + Y++I+DG  K+G +++A ++  +M   NI PNV  Y +LI G+  A+    A  L
Sbjct: 260 PNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDL 319

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL+ +    +  ++ L ++ +M+EA  L   M+  G+ PD       V Y  +
Sbjct: 320 FKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDR------VNYTSM 373

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K GK  +A  ++Q +T      +VV YN+ I+ L    + + +      M   G+
Sbjct: 374 MDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYE-SESFHTGMRQLGL 432

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           AP+   F T++ ++ ++      ++LL  M    + P +   +I+V  L
Sbjct: 433 APDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRL 481



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 6/163 (3%)

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
           ++  V  FNV++D  C+N ++  A  LL+ M   G  PD      IV Y  L++G CKIG
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPD------IVTYNTLMNGFCKIG 66

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
            L  A++L   ++   L PNV+TY   I A C  + ++ A  ++ +M VK + P+ V +T
Sbjct: 67  DLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYT 126

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +M    +  +  +   + R M++  V+P     + ++D L K
Sbjct: 127 CIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFK 169



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           I  +V  +N LI G+C   + + A  L   M   G   D+VT+N +M+  CK   +  A 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
           +L+  +    + P      N++ Y  LID  CK   L++A  +   +T   L+P+VVTY 
Sbjct: 73  KLMGEISLVNLEP------NVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYT 126

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             ++ LC   ++++A  +F +ME  GV PN   + TL+ S  ++   ++   L   M  R
Sbjct: 127 CIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVR 186

Query: 227 NVMPYASILSIIVDLLVKNEISLNSIPQFN 256
            +     + + ++D L K  ++ N+   F 
Sbjct: 187 GIGFDVVVYTALMDGLFKAGMANNAEDMFQ 216


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 122/236 (51%), Gaps = 10/236 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  +TYN++I G C+ G +D+A  L  +M D+N  P+V+TY +L+  FC     ++A 
Sbjct: 283 CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAY 342

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M+   L  DVVTF  ++D LC   +M++A  LL+ + + G      C   I  Y 
Sbjct: 343 ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG------CPPTIYTYN 396

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM--E 189
           C++DG CK  +++ A EL       G +PN VTYNI +   C   + D+A   +LD    
Sbjct: 397 CVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQ-YLDQLNS 455

Query: 190 VKGVAPNCV-IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             G  P  V ++  ++ +  R   T   ++    M +R  +P A+  + +V  L K
Sbjct: 456 EGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCK 511



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 106/208 (50%), Gaps = 6/208 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ VT+ +++DGLC EG ++ A EL  ++      P + TYN ++ G+C +N   +AE 
Sbjct: 354 SPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEE 413

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD-LMIQGGVRPDAFCEINIVAYG 131
           L  +   RG   + VT+N+++   C+  + D+A + LD L  +GG      C  ++  Y 
Sbjct: 414 LVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGP-----CPTSVAMYA 468

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++D LC+ G+  +A +  + + + G +P   T+   + ALC   Q  +AH+L  +M   
Sbjct: 469 IILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKY 528

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           G  P       ++ ++ R     K  EL
Sbjct: 529 GHTPGPGTCDAVVSAYCRAGMIQKADEL 556



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 123/265 (46%), Gaps = 46/265 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF------------ 61
           P T+ +N +I GLC+ G +  A  ++ QM D +  P+ +TY  L+HG             
Sbjct: 113 PGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKAGRLRDAVQV 171

Query: 62  -----------------------CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                                  C  +  ++A  L  EM+ RG+ ++ +T++ ++D LCK
Sbjct: 172 LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 231

Query: 99  NRKMDEATR-LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
             ++DEA   LL  + + G  PD      IV Y  +IDGLCK G+L++A ++ + ++ A 
Sbjct: 232 CERLDEAVALLLGEVTRRGFTPD------IVTYSTVIDGLCKAGRLRDAVDIFEEMSCA- 284

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
             P  +TYN  I   C    MD+A  L   M     AP+ + +TTLM +F +        
Sbjct: 285 --PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAY 342

Query: 218 ELLRSMDKRNVMPYASILSIIVDLL 242
           EL + M    + P     + +VD L
Sbjct: 343 ELFQQMVANKLSPDVVTFTSLVDGL 367



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 116/269 (43%), Gaps = 51/269 (18%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA-- 64
           E G V   N  TY  +I  LCK   +D+A  L L MK   +NP  + +N +I G C A  
Sbjct: 74  ELGAV---NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGR 130

Query: 65  -----------NDGNEAEYLFIEMMDRGLQS---------------------DVVTFNVI 92
                      ND +  ++L    +  GL                       D  T  V+
Sbjct: 131 LRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVV 190

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE-LSQ 151
           +  LC   ++D+A  L++ M+  G+        N + Y  L+DGLCK  +L  A   L  
Sbjct: 191 VQSLCLGDRVDDARELVEEMLHRGM------AANAITYSALVDGLCKCERLDEAVALLLG 244

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +TR G  P++VTY+  I  LC   ++  A D+F +M     AP  + + +L+  + R  
Sbjct: 245 EVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAG 301

Query: 212 ETSKVIELLRSMDKRNVMP----YASILS 236
           +  + I LL  M   N  P    Y +++S
Sbjct: 302 DMDEAIRLLGKMVDDNCAPDVITYTTLMS 330



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 8/181 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYN ++DG CK   V KA+EL    +     PN VTYN L+ G C A   ++A 
Sbjct: 388 CPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQAL 447

Query: 72  YLFIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
               ++   G    + V  + +I+D LC++ + D+A +  + MIQ G  P A        
Sbjct: 448 QYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAA------AT 501

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  ++  LCK  + + A EL + + + G  P   T +  + A C    + KA +L  ++ 
Sbjct: 502 FATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 561

Query: 190 V 190
           +
Sbjct: 562 L 562



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 9/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ V  NTI+  LC       A  LF +M +     N  TY +LIH  C A   +EA  
Sbjct: 43  SPDPVELNTILAELCDARDTTTAMALFDKMAELGAV-NHTTYYNLIHPLCKARLLDEAMG 101

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L ++M  RG+    +  NV++  LC+  ++  A  +   M      P  F     + Y  
Sbjct: 102 LLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM--NDAHPPDF-----LTYTK 154

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GL K G+L++A ++ Q +  A  +P+  T  + + +LC  +++D A +L  +M  +G
Sbjct: 155 LVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRG 214

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIE-LLRSMDKRNVMPYASILSIIVDLLVK 244
           +A N + ++ L+    +     + +  LL  + +R   P     S ++D L K
Sbjct: 215 MAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCK 267



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 9/233 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFL-QMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           ++ T+  ++ GL     +     L L +++D  ++P+ V  N+++   C A D   A  L
Sbjct: 9   DSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMAL 68

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M + G  +    +N+I   LCK R +DEA  LL  M   G+ P      N+V     
Sbjct: 69  FDKMAELGAVNHTTYYNLI-HPLCKARLLDEAMGLLLDMKSRGMNPGTLLH-NVV----- 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+L++A  + + +  A   P+ +TY   +H L    ++  A  +  +M     
Sbjct: 122 IGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARH 180

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+    T ++ S    +      EL+  M  R +   A   S +VD L K E
Sbjct: 181 VPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCE 233



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 44/100 (44%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C  +   Y  I+D LC++G  D A + + +M      P   T+ +++   C A+   
Sbjct: 457 GGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQ 516

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           +A  L  EM+  G      T + ++   C+   + +A  L
Sbjct: 517 QAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADEL 556


>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61400-like [Glycine max]
          Length = 498

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 6/242 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+ T+ID L K G +  A   F  M   ++ PN   YNSLIHG+C A D  EA +L
Sbjct: 133 PDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGDLLEAMWL 192

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM   G+ SDVVT+N+++  LC   +++EA  L++ M +  V        N V +  +
Sbjct: 193 RLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFA------NSVXFNVV 246

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CKIG ++ A E+   +T   + PNV+T++I I   CN   +  A  L+ +M +KG+
Sbjct: 247 IDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGI 306

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V +T L+    +   T +   L + M    + P    +S ++D L+K+  + ++I 
Sbjct: 307 VPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAIK 366

Query: 254 QF 255
            F
Sbjct: 367 MF 368



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 16/234 (6%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N+V +N +IDG CK G ++KA E+  QM +E I PNV+T++ LI GFC   +   A  L+
Sbjct: 239 NSVXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLY 298

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +G+  DVVT+  ++D  CK     EA RL   M+  G+ P+ F         C+I
Sbjct: 299 TEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMF------TVSCVI 352

Query: 135 DGLCKIGKLKNARELSQSLTRAGL----------MPNVVTYNITIHALCNDEQMDKAHDL 184
           DGL K G+  +A ++    T AG            PN + Y I I  LC D  + KA   
Sbjct: 353 DGLLKDGRTNDAIKMFLEKTGAGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKF 412

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           F +M+  G  P+ +++ T++ +  +      V+ L   M K  V+    I  ++
Sbjct: 413 FAEMKWNGFKPDMLVYVTMLQAHFQSKHMIDVMMLHADMVKMGVIQNTFIYRVL 466



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 5/203 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +T++ +IDG C +G V  A  L+ +M  + I P+VVTY +LI G C   +  EA  
Sbjct: 272 EPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFR 331

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA----FCEINIV 128
           L  EM+D GL  ++ T + ++D L K+ + ++A ++       G   D     FC  N +
Sbjct: 332 LHKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAIKMFLEKTGAGYPGDKMDSRFCSPNSM 391

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI GLC+ G +  A +    +   G  P+++ Y   + A    + M     L  DM
Sbjct: 392 MYAILIQGLCEDGXIFKATKFFAEMKWNGFKPDMLVYVTMLQAHFQSKHMIDVMMLHADM 451

Query: 189 EVKGVAPNCVIFTTLMPSFIRKN 211
              GV  N  I+  L   + R+N
Sbjct: 452 VKMGVIQNTFIYRVLSRGY-REN 473



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 111/282 (39%), Gaps = 55/282 (19%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P     N ++ GL K    D   E+++ M     +P V+TY  L++  C   D + A+ +
Sbjct: 2   PTLQPCNALLHGLVKTQMFDSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKV 61

Query: 74  FIEMMDRGLQSDVV--------------------------TFNVIMDELCKNRKMDEATR 107
           F EM++RG++ +VV                          T+  +MD       +     
Sbjct: 62  FDEMLERGIEPNVVIYGQMGEAEGVFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFY 121

Query: 108 LLDLMIQGGVRPDAFCEINIV-----------------------------AYGCLIDGLC 138
           L   M++ G+ PD      ++                             AY  LI G C
Sbjct: 122 LYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYC 181

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G L  A  L   + R G+  +VVTYNI I  LC+  ++++A  L   M+   V  N V
Sbjct: 182 KAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSV 241

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            F  ++    +  +  K IE+   M +  + P     SI++D
Sbjct: 242 XFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILID 283



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 52/107 (48%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN++ Y  +I GLC++G + KA + F +MK     P+++ Y +++     +    +  
Sbjct: 386 CSPNSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFKPDMLVYVTMLQAHFQSKHMIDVM 445

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
            L  +M+  G+  +   + V+     +N  +  A    + +++ G+ 
Sbjct: 446 MLHADMVKMGVIQNTFIYRVLSRGYRENGYLKSALMCSEYLMEYGIH 492


>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
 gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
          Length = 484

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 133/271 (49%), Gaps = 32/271 (11%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           + G  CKPN  TYNT+I+GLCK G +D A  LF ++  + ++P+  TY++L+HG C A  
Sbjct: 139 KMGKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAER 198

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------- 119
              A  ++  M++     D   +N + D  CK R++DEA  +L  MIQ   +P       
Sbjct: 199 LEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVTYNC 258

Query: 120 -------------DAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                        +A+          C  N V YG +I GL KI +++   EL + +++A
Sbjct: 259 IINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKA 318

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF--IRKNETS 214
           GL P+   Y+  I+A     ++D+A  +  D     V P+  ++TTL+  +   RK    
Sbjct: 319 GLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVD 378

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + + L ++M  R V P     +I++  L K 
Sbjct: 379 EALLLFQNMKDRRVWPNVITYNIVLRGLCKT 409



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 9/215 (4%)

Query: 12  CKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           CKP+ VTYN II+G+C+ +  +++A  LF QM   +  PN VTY ++I G     +    
Sbjct: 249 CKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRC 308

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF  M   GL  D   ++ ++    K RK+DEA  +L    +  V PD +       Y
Sbjct: 309 LELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVY------MY 362

Query: 131 GCLIDGLCKIGKLK--NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
             LI G C+  K +   A  L Q++    + PNV+TYNI +  LC   + D+A+ +F +M
Sbjct: 363 TTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEM 422

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
                +PN + F  +    I   +T K   +   M
Sbjct: 423 FKVKCSPNRMTFKVMTMGMIHCRKTDKFERIFMDM 457



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 113/270 (41%), Gaps = 31/270 (11%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            RE    C+P+  ++  II   C      +A      M+   I P+V  YN ++ G+C  
Sbjct: 68  KRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDL 127

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A   F + M +  + +V T+N +++ LCK  K+D A  L   +    V PD F  
Sbjct: 128 GRVGRALIKFGK-MGKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTY 186

Query: 125 INIV-----------------------------AYGCLIDGLCKIGKLKNARELSQSLTR 155
             +V                             AY  + DG CK  ++  A E+ +++ +
Sbjct: 187 STLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQ 246

Query: 156 AGLMPNVVTYNITIHALCN-DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
               P+VVTYN  I+ +C    ++++A+ LF  M      PN V + T++    +  E  
Sbjct: 247 RRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQ 306

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + +EL + M K  + P       ++   VK
Sbjct: 307 RCLELFKGMSKAGLSPDGYAYHSLIYAFVK 336



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 8/186 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN VTY T+I GL K   V +  ELF  M    ++P+   Y+SLI+ F      +
Sbjct: 282 GSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLD 341

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK--MDEATRLLDLMIQGGVRPDAFCEIN 126
           EA+ +  +     +  DV  +  ++   C+ RK  +DEA  L   M    V P      N
Sbjct: 342 EAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWP------N 395

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           ++ Y  ++ GLCK G+   A ++ Q + +    PN +T+ +    + +  + DK   +F+
Sbjct: 396 VITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCRKTDKFERIFM 455

Query: 187 DMEVKG 192
           DM  KG
Sbjct: 456 DMVYKG 461



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 102/231 (44%), Gaps = 13/231 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   Y  ++  L +     +A   F +    +  P++ ++  +I  FC   +   A  
Sbjct: 41  RHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWR 100

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               M   G+  DV  +NV++   C   ++  A      +I+ G +    C+ N+  Y  
Sbjct: 101 YLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRA------LIKFG-KMGKTCKPNVATYNT 153

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD---KAHDLFLDME 189
           +I+GLCK GK+  A  L   L    + P+  TY+  +H LC  E+++   K +D+ L+  
Sbjct: 154 VINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEAN 213

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             G A     +  +   F ++    + +E+L++M +R   P     + I++
Sbjct: 214 YDGDAG---AYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVTYNCIIN 261


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN     T++ GLCKEG    A EL+ ++ ++    N+VT N+LIHG C   +  EA  
Sbjct: 520 RPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVR 579

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++RG   D +T+N ++   CK  K++E  +L   M++ G+ PD F       Y  
Sbjct: 580 LLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTF------TYNL 633

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G+C+IGKL  A  L        L+PNV TY + I   C  +++++   LF ++  + 
Sbjct: 634 LIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN 693

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +  N V++ TL+ ++ R   T +  +L   M  + + P  +  S ++
Sbjct: 694 LELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 740



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 118/218 (54%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T TYN +I G+C+ G +D+A  L+ + K  ++ PNV TY  +I G+C A+   E E 
Sbjct: 625 EPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEK 684

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF E++ + L+ + V +N ++   C+N    EA +L D M   G+ P          Y  
Sbjct: 685 LFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPP------TTATYSS 738

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G+C IG++++A+ L   + + GL+PNVV Y   I   C   QMDK  ++  +M    
Sbjct: 739 LIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYD 798

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN + +T ++  + +  +     +LL  M  + ++P
Sbjct: 799 IHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVP 836



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   ++T I+  CK G V+ A +LF  M+   ++PNVVTYN+LIHG C   + +EA   
Sbjct: 311 PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRF 370

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G+ + ++T++V+++ L K  K +EA  +L   ++ G  P      N V Y  L
Sbjct: 371 KEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTP------NEVVYNTL 424

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK+G L +A  +   +   G+ PN VT N  I   C   QM++A  +  +M  +G 
Sbjct: 425 IDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGF 484

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + N   FTT++      +     +  LR M  RN+ P   +L+ +V  L K
Sbjct: 485 SINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCK 535



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + +TYNT+I G CKEG V++  +L  +M  + I P+  TYN LIHG C     +EA  L+
Sbjct: 592 DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLW 651

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCL 133
            E   R L  +V T+ V++D  CK  K++E  +L  +L+ Q         E+N V Y  L
Sbjct: 652 NECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN-------LELNSVVYNTL 704

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I   C+ G    A +L   +   G+ P   TY+  IH +CN  +M+ A  L  +M  +G+
Sbjct: 705 IRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGL 764

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN V +T L+  + +  +  KV+ +L+ M   ++ P     ++++D
Sbjct: 765 LPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMID 811



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V YNT+IDG CK G +  A  +   M  + INPN VT NS+I GFC      +AE +
Sbjct: 416 PNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECI 475

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ RG   +   F  I+  LC N + + A R L  M+   +RP      N      L
Sbjct: 476 LEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRP------NDGLLTTL 529

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK GK  +A EL   L   G   N+VT N  IH LC    M +A  L   M  +G 
Sbjct: 530 VGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 589

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             + + + TL+    ++ +  +  +L   M K+ + P
Sbjct: 590 VLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEP 626



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 7/213 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN +I GLCK G +D+A     +M  + +N  ++TY+ LI+G       NEA  +
Sbjct: 346 PNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSV 405

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E +++G   + V +N ++D  CK   + +A R+   M+  G+ P      N V    +
Sbjct: 406 LKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINP------NSVTLNSI 459

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CKIG+++ A  + + +   G   N   +   IH LC + + + A     +M ++ +
Sbjct: 460 IQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNM 519

Query: 194 APNCVIFTTLMPSFIRKNETSKVIEL-LRSMDK 225
            PN  + TTL+    ++ + S  +EL  R ++K
Sbjct: 520 RPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK 552



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 6/199 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +IDG CK   +++ ++LF ++  +N+  N V YN+LI  +C   +  EA  L
Sbjct: 661 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 720

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M  +G+     T++ ++  +C   +M++A  L+D M + G+ P      N+V Y  L
Sbjct: 721 HDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLP------NVVCYTAL 774

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK+G++     + Q ++   + PN +TY + I        M  A  L  +M  KG+
Sbjct: 775 IGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGI 834

Query: 194 APNCVIFTTLMPSFIRKNE 212
            P+ V +  L   F ++ +
Sbjct: 835 VPDTVTYNVLTNGFCKEGK 853



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 6/214 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   + TII  LC     + A     +M   N+ PN     +L+ G C     ++A  L+
Sbjct: 487 NPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELW 546

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             ++++G  +++VT N ++  LCK   M EA RLL  M++ G   D       + Y  LI
Sbjct: 547 FRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK------ITYNTLI 600

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G CK GK++   +L   + + G+ P+  TYN+ IH +C   ++D+A +L+ + + + + 
Sbjct: 601 SGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV 660

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           PN   +  ++  + + ++  +  +L   +  +N+
Sbjct: 661 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNL 694



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 10/186 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N+V YNT+I   C+ G   +A +L   M+ + I P   TY+SLIHG C      +A+ L 
Sbjct: 697 NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLI 756

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM   GL  +VV +  ++   CK  +MD+   +L  M    + P      N + Y  +I
Sbjct: 757 DEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHP------NKITYTVMI 810

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G +K A +L   +   G++P+ VTYN+  +  C + ++++   L  D    GV 
Sbjct: 811 DGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAED----GVG 866

Query: 195 PNCVIF 200
            N  +F
Sbjct: 867 FNSPLF 872



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 54/97 (55%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y  +I G CK G +DK   +  +M   +I+PN +TY  +I G+  + D   A  L
Sbjct: 766 PNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKL 825

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
             EM+ +G+  D VT+NV+ +  CK  K++E   L +
Sbjct: 826 LHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAE 862



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L K  +L+ +  + +++ R G+ P+V  ++  I+A C   +++ A  LF DME  G
Sbjct: 285 LLSSLVKANELEKSYWVFETM-RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 343

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           V+PN V +  L+    +     +       M K  V       S++++ L+K E
Sbjct: 344 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLE 397



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           +Y  L+     +   + A  L I ++DR L        V+  +  KNR ++ A+ + DL 
Sbjct: 181 SYCVLMRSLIVSGFVSPARLLLIRLIDRKLP-------VLFGD-PKNRHIEIASAMADLN 232

Query: 113 IQGGVRPDAFCEINIVAYGCLIDGLCKIGK---LKNARELSQSLTRAGLMPNVVTYNITI 169
             G         + + A   LI   C   +    +NA  + + L   G+ P V T    +
Sbjct: 233 EVGE------SGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLL 286

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            +L    +++K++ +F  M  +GV+P+  +F+T + +F +  +    I+L   M+K  V 
Sbjct: 287 SSLVKANELEKSYWVFETMR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVS 345

Query: 230 P 230
           P
Sbjct: 346 P 346


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 135/256 (52%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+++G CK G +  AK+L  ++   N+ PNV+TY +LI  +C +    +A Y+
Sbjct: 50  PDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYM 109

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
           + EM  + L  DVVT+  IM+ LCK+ K++EA  +   M + GV P+ F           
Sbjct: 110 YDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFK 169

Query: 124 -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                ++V Y  L+DGL K G   NA ++ Q L    L+PN VT
Sbjct: 170 EGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVT 229

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+  I   C    ++K   L  +ME K + PN +++++++  + +K   ++ ++++R M 
Sbjct: 230 YSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMV 289

Query: 225 KRNVMPYASILSIIVD 240
           +RN++P   +   ++D
Sbjct: 290 QRNILPNVFVYGTLID 305



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 126/248 (50%), Gaps = 18/248 (7%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  K +  TYNT+I   C+ G + +A  +F  M  + I  +++TYN+LIHG+C ++   
Sbjct: 534 GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLK 593

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +  +M+  G+  +V T+N+++  L   R + EA  L++ M + G+ P+A       
Sbjct: 594 KAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNA------T 647

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G  KIG +K   +L   +   G +P   TYN+ I      ++M +A +L  +M
Sbjct: 648 TYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEM 707

Query: 189 EVKGVAPNCVIFTTLMPSF------------IRKNETSKVIELLRSMDKRNVMPYASILS 236
           +V+G+ PN   +  L+  +            ++++  ++   L   M+++  +P  + L+
Sbjct: 708 QVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLA 767

Query: 237 IIVDLLVK 244
            I   L K
Sbjct: 768 CISFTLAK 775



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 10/217 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  I++GLCK G V++AK +F +M++  + PN  +Y +LI       +GN AE  
Sbjct: 120 PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLF--KEGNVAEAF 177

Query: 74  FIE--MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++  M+ RG+  DVV +  +MD L K    + A  +  ++++  + P      N V Y 
Sbjct: 178 VLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVP------NCVTYS 231

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK+G +     L Q +    + PNV+ Y+  +        +++A D+   M  +
Sbjct: 232 ALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQR 291

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            + PN  ++ TL+  + + ++    ++L + M  R +
Sbjct: 292 NILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGL 328



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 8/237 (3%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G R+ G+   P++ T+NT+I+  CKEG +  A +L  +MK   + PN +T N L+   C 
Sbjct: 426 GMRQLGLA--PDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCA 483

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           A +  +   L  +M+  G      T   ++D   K+R+ D    + D ++  GV+ D   
Sbjct: 484 AGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLD--- 540

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
              +  Y  LI   C++G ++ A  + + +   G++ +++TYN  IH  C    + KA  
Sbjct: 541 ---LSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFA 597

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +   M  +GV+PN   +  L+          +   L+  M +R ++P A+   I+V 
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVS 654



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 7/229 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + Y++I+DG  K+G +++A ++  +M   NI PNV  Y +LI G+  A+    A  L
Sbjct: 260 PNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDL 319

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL+ +    +  ++ L ++ +M+EA  L   M+  G+ PD       V Y  +
Sbjct: 320 FKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDR------VNYTSM 373

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K GK  +A  ++Q +T      +VV YN+ I+ L    + + +      M   G+
Sbjct: 374 MDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYE-SESFHTGMRQLGL 432

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           AP+   F T++ ++ ++      ++LL  M    + P +   +I+V  L
Sbjct: 433 APDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRL 481



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 6/163 (3%)

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
           ++  V  FNV++D  C+N ++  A  LL+ M   G  PD      IV Y  L++G CKIG
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPD------IVTYNTLMNGFCKIG 66

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
            L  A++L   ++   L PNV+TY   I A C  + ++ A  ++ +M VK + P+ V +T
Sbjct: 67  DLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYT 126

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +M    +  +  +   + R M++  V+P     + ++D L K
Sbjct: 127 CIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFK 169



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           I  +V  +N LI G+C   + + A  L   M   G   D+VT+N +M+  CK   +  A 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
           +L+  +    + P      N++ Y  LID  CK   L++A  +   +T   L+P+VVTY 
Sbjct: 73  KLMGEISLVNLEP------NVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYT 126

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             ++ LC   ++++A  +F +ME  GV PN   + TL+ S  ++   ++   L   M  R
Sbjct: 127 CIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVR 186

Query: 227 NVMPYASILSIIVDLLVKNEISLNSIPQFN 256
            +     + + ++D L K  ++ N+   F 
Sbjct: 187 GIGFDVVVYTALMDGLFKAGMANNAEDMFQ 216


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 8/238 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C+PN+ TY  ++DGLCKEG V++A  L  +MK + +  +VV Y++LI GFC     +
Sbjct: 38  GSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLD 97

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
             + LF EM+++G+  +VV ++ +++  CK     EAT +L  M + G++PD +      
Sbjct: 98  RGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVY------ 151

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y C+I GLCK G+ + A +L   +T  G  P+ VTYN+ I+ LC +  +  A  +F  M
Sbjct: 152 TYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETM 211

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM--DKRNVMPYASILSIIVDLLVK 244
             KG     V + TL+       +  + ++L  S+  D   V P     + ++  L K
Sbjct: 212 LEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCK 269



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNTII+GLCKE  ++KA +L ++M+  +  PN  TY  L+ G C      EA  L
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ DVV ++ ++   C    +D    L D M++ G+ P      N+V Y CL
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISP------NVVVYSCL 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK G  + A  +  ++T  G+ P+V TY   I  LC D +  KA DLF  M  KG 
Sbjct: 122 INGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGE 181

Query: 194 APNCVIFTTLMPSFIRK---NETSKVIELLRSMDKR-NVMPYASIL 235
            P+ V +  L+    ++    +  K+ E +    KR  V+ Y +++
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLI 227



 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 139/276 (50%), Gaps = 31/276 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V Y+T+I G C +G +D+ K LF +M ++ I+PNVV Y+ LI+GFC      EA  + 
Sbjct: 79  DVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVL 138

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------------- 119
             M +RG+Q DV T+  ++  LCK+ +  +A  L DLM + G  P               
Sbjct: 139 HTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKE 198

Query: 120 ----DAFC----------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG--LMPNVV 163
               DAF            + +V+Y  LI GLC  GKL  A +L  SL   G  + P+V+
Sbjct: 199 GCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVI 258

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T+N  I  LC + ++DKA +++  M  +G   N      L+  +I+     K +EL + +
Sbjct: 259 TFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRV 318

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            K  ++P ++  S+++D   K  +   +   F+R K
Sbjct: 319 HKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMK 354



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 128/276 (46%), Gaps = 50/276 (18%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEG-----------------------------------F 31
           E G   +P+ +T+NT+I GLCKEG                                    
Sbjct: 248 EDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGI 307

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +DKA EL+ ++    + P+  TY+ +I GFC  +  N A+ LF  M   GL   +  +N 
Sbjct: 308 IDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNT 367

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M  LCK   +++A RL   M +    PD       +++  +IDG  K G + +A+EL  
Sbjct: 368 LMASLCKESSLEQARRLFQEMKESNCEPDT------ISFNIMIDGTLKAGDIHSAKELLN 421

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            + + GL P+  TY+  I+ L    QM++A   F  M   G+ P+  ++ +L+  F   +
Sbjct: 422 DMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLND 481

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           E  +VI LLR M         + + +I+DL + N I
Sbjct: 482 EIEEVINLLRQM---------ADMGVILDLEITNSI 508



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 6/207 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ TY+ +IDG CK   ++ AK LF +MK   ++P +  YN+L+   C  +   +A  L
Sbjct: 325 PSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRL 384

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM +   + D ++FN+++D   K   +  A  LL+ M Q G+ PDA+       Y   
Sbjct: 385 FQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAY------TYSSF 438

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ L K+G+++ A+    S+  +G+ P+   Y+  I     ++++++  +L   M   GV
Sbjct: 439 INRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGV 498

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELL 220
             +  I  +++       E   V+ELL
Sbjct: 499 ILDLEITNSILTFLCNSAEHLHVMELL 525



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 96/172 (55%), Gaps = 6/172 (3%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D+V++N I++ LCK +++++A   +DL+++      + CE N   Y  L+DGLCK G+++
Sbjct: 9   DIVSYNTIINGLCKEKRLEKA---VDLLVE---MEGSSCEPNSFTYCILMDGLCKEGRVE 62

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            A  L   + R GL  +VV Y+  I   C+   +D+   LF +M  KG++PN V+++ L+
Sbjct: 63  EAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLI 122

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
             F +K    +   +L +M +R + P     + ++  L K+  +  ++  F+
Sbjct: 123 NGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFD 174



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+T+++N +IDG  K G +  AKEL   M+   + P+  TY+S I+         EA+
Sbjct: 393 CEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAK 452

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F  M+  G+  D   ++ ++     N +++E   LL  M   GV  D     +I+ + 
Sbjct: 453 GAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFL 512

Query: 132 C 132
           C
Sbjct: 513 C 513


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 121/214 (56%), Gaps = 5/214 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + + Y + I GLCK G +D+AK + ++M +    P+ V+YN +I+  C  N  +EA+ L 
Sbjct: 186 DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELM 245

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            + M+R     V    V++D LCK+R+++EA  +L+ M++ G R       ++V Y  +I
Sbjct: 246 DQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAP-----SVVTYSAVI 300

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK  +L +A  + Q + RAG +P+VVTY   I A C   ++D+A +LF  M  +G A
Sbjct: 301 DGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCA 360

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            + V +  L+  + R  +  + I ++  M  R +
Sbjct: 361 SDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 8/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   Y  +I  LCK   +D A   F QM      P+ VTY  L+H    A    +   
Sbjct: 46  KPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQ 105

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM+ +G   ++VT+  +++  CK  ++D+A  L+  +   G  P          Y  
Sbjct: 106 IFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSG------SLYST 159

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK  + + AREL +    AG + +V+ Y   I  LC   ++D+A  + + M   G
Sbjct: 160 LIDGLCKHDRHEEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAG 217

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            AP+ V +  ++ S  + N  S+  EL+    +R  MP   + +++VD L K+
Sbjct: 218 CAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKS 270



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 11/237 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY  ++  L K    ++  ++F +M  +  +P +VTY ++++G+C A   ++A 
Sbjct: 80  CLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQAL 139

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   +   G       ++ ++D LCK+ + +EA  L + M  G V+       +++ Y 
Sbjct: 140 SLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFE-MAAGDVQ-------DVIVYT 191

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             I GLCK GKL  A+ +   +  AG  P+ V+YN+ I++LC D ++ +A +L      +
Sbjct: 192 SFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMER 251

Query: 192 GVAPNCVIFTTLMPSFI--RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              P   + T L+      R+ E + VI L R ++  +  P     S ++D L K +
Sbjct: 252 KCMPGVPVCTVLVDGLCKSRRVEEACVI-LERMLEAGDRAPSVVTYSAVIDGLCKAD 307



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 8/201 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           L  +MK   I P +VT+ SLI   C  N  N+A  +F +M+D  ++ D   + V++  LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  K+D A    + M+Q G  PD       V Y  L+  L K  K +   ++ + +   G
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDK------VTYTVLVHSLFKACKWEQGHQIFEEMLSKG 114

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
             P +VTY   ++  C   ++D+A  L   ++  G +P+  +++TL+    + +   +  
Sbjct: 115 HSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEAR 174

Query: 218 EL--LRSMDKRNVMPYASILS 236
           EL  + + D ++V+ Y S +S
Sbjct: 175 ELFEMAAGDVQDVIVYTSFIS 195



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G+   +VTF  ++ +LC+    ++A ++   MI   V+PDAF       Y  
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAF------LYTV 54

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCKI KL  A    + + ++G +P+ VTY + +H+L    + ++ H +F +M  KG
Sbjct: 55  VIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKG 114

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +P  V + T++  + +     + + L+R +      P  S+ S ++D L K++
Sbjct: 115 HSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHD 168



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 62/104 (59%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+ +IDGLCK   +D A  +  +M+     P+VVTY ++I  FC     +EA  L
Sbjct: 291 PSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEAREL 350

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           F  M +RG  SDVV +N+++   C+  K+DEA  +++ M   G+
Sbjct: 351 FQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY  IID  CK G +D+A+ELF +M +     +VV YN LI G+C A   +EA 
Sbjct: 324 CVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAI 383

Query: 72  YLFIEMMDRGL 82
            +  EM  RG+
Sbjct: 384 AMIEEMAGRGI 394


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 135/256 (52%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+++G CK G +  AK+L  ++   N+ PNV+TY +LI  +C +    +A Y+
Sbjct: 50  PDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYM 109

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
           + EM  + L  DVVT+  IM+ LCK+ K++EA  +   M + GV P+ F           
Sbjct: 110 YDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFK 169

Query: 124 -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                ++V Y  L+DGL K G   NA ++ Q L    L+PN VT
Sbjct: 170 EGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVT 229

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+  I   C    ++K   L  +ME K + PN +++++++  + +K   ++ ++++R M 
Sbjct: 230 YSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMV 289

Query: 225 KRNVMPYASILSIIVD 240
           +RN++P   +   ++D
Sbjct: 290 QRNILPNVFVYGTLID 305



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 126/248 (50%), Gaps = 18/248 (7%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  K +  TYNT+I   C+ G + +A  +F  M  + I  +++TYN+LIHG+C ++   
Sbjct: 534 GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLK 593

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +  +M+  G+  +V T+N+++  L   R + EA  L++ M + G+ P+A       
Sbjct: 594 KAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNA------T 647

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G  KIG +K   +L   +   G +P   TYN+ I      ++M +A +L  +M
Sbjct: 648 TYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEM 707

Query: 189 EVKGVAPNCVIFTTLMPSF------------IRKNETSKVIELLRSMDKRNVMPYASILS 236
           +V+G+ PN   +  L+  +            ++++  ++   L   M+++  +P  + L+
Sbjct: 708 QVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLA 767

Query: 237 IIVDLLVK 244
            I   L K
Sbjct: 768 CISFTLAK 775



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 10/217 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  I++GLCK G V++AK +F +M++  + PN  +Y +LI       +GN AE  
Sbjct: 120 PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLF--KEGNVAEAF 177

Query: 74  FIE--MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++  M+ RG+  DVV +  +MD L K    + A  +  ++++  + P      N V Y 
Sbjct: 178 VLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVP------NCVTYS 231

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK+G +     L Q +    + PNV+ Y+  +        +++A D+   M  +
Sbjct: 232 ALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQR 291

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            + PN  ++ TL+  + + ++    ++L + M  R +
Sbjct: 292 NILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGL 328



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 8/237 (3%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G R+ G+   P++ T+NT+I+  CKEG +  A +L  +MK   + PN +T N L+   C 
Sbjct: 426 GMRQLGLA--PDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCA 483

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           A +  +   L  +M+  G      T   ++D   K+R+ D    + D ++  GV+ D   
Sbjct: 484 AGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLD--- 540

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
              +  Y  LI   C++G ++ A  + + +   G++ +++TYN  IH  C    + KA  
Sbjct: 541 ---LSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFA 597

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +   M  +GV+PN   +  L+          +   L+  M +R ++P A+   I+V 
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVS 654



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 7/229 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + Y++I+DG  K+G +++A ++  +M   NI PNV  Y +LI G+  A+    A  L
Sbjct: 260 PNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDL 319

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL+ +    +  ++ L ++ +M+EA  L   M+  G+ PD       V Y  +
Sbjct: 320 FKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDR------VNYTSM 373

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K GK  +A  ++Q +T      +VV YN+ I+ L    + + +      M   G+
Sbjct: 374 MDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYE-SESFHTGMRQLGL 432

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           AP+   F T++ ++ ++      ++LL  M    + P +   +I+V  L
Sbjct: 433 APDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRL 481



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 6/163 (3%)

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
           ++  V  FNV++D  C+N ++  A  LL+ M   G  PD      IV Y  L++G CKIG
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPD------IVTYNTLMNGFCKIG 66

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
            L  A++L   ++   L PNV+TY   I A C  + ++ A  ++ +M VK + P+ V +T
Sbjct: 67  DLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYT 126

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +M    +  +  +   + R M++  V+P     + ++D L K
Sbjct: 127 CIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFK 169



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           I  +V  +N LI G+C   + + A  L   M   G   D+VT+N +M+  CK   +  A 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
           +L+  +    + P      N++ Y  LID  CK   L++A  +   +T   L+P+VVTY 
Sbjct: 73  KLMGEISLVNLEP------NVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYT 126

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             ++ LC   ++++A  +F +ME  GV PN   + TL+ S  ++   ++   L   M  R
Sbjct: 127 CIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVR 186

Query: 227 NVMPYASILSIIVDLLVKNEISLNSIPQFN 256
            +     + + ++D L K  ++ N+   F 
Sbjct: 187 GIGFDVVVYTALMDGLFKAGMANNAEDMFQ 216


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTYN IID +C+EG VD+A+EL   +      PN V YN+++ GFC      +A+
Sbjct: 229 CEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDAD 288

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM+      +  T NVI++ LC+   + + T  L+ M + G      C  N+V Y 
Sbjct: 289 EILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHG------CTANVVTYN 342

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+C+ G + +A EL  ++   G  P++VTYN  +  LC+ ++ + A +L + M   
Sbjct: 343 AVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQN 402

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              P+   F T++  + +K    +  E+ + M ++   P ++  S I+  L K
Sbjct: 403 DRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTK 455



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 9/224 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           + FG  CKP+ VTYNT++ GLC     + A+EL ++M   +  P+  T+N++I  +C   
Sbjct: 365 QSFG--CKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKG 422

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  +F +M ++G   +  T++ I+  L K  KM++A  LL+ M   G   D     
Sbjct: 423 LILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKM--- 479

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y  L + L K  K++   ++   L  +G+ P  V YN  +  LC + + D A D+ 
Sbjct: 480 ----YRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVL 535

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            DM   G  P+   +  L+     +  + +  ELL  +  R+V+
Sbjct: 536 ADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSRLCSRDVL 579



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 9/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N ++  LC+ G    A  +      E       TY +L+ G+C A    +A  +
Sbjct: 94  PDVPLANRLVRDLCRRGRPADAARVVEACGPE---ATAATYGALVDGYCRAGLLEDARRV 150

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M      S     N ++  LC+  ++ +A  +LD M+  G  PD      +V Y  L
Sbjct: 151 VGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPD------VVTYNIL 204

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +   CK    + A EL   +   G  PN VTYN+ I A+C +  +D+A +L   +  +G 
Sbjct: 205 LQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGC 264

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V + T++  F          E+L  M + N  P  + L++I++ L +
Sbjct: 265 KPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCR 315


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 14  PNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P  ++YN I+D + + +  V  A+ +F +M +  ++PNV TYN LI GFC A +      
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLX 224

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM   G   +VVT+N I+D  CK RK+ EA +LL LM   G+ P      N+++Y  
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNP------NLISYNV 278

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLC+ G++K   E+ + +++   +P+ VT+N  I+  CN     +A  L  +M   G
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           ++PN V +TTL+ S  +    ++ +E L  M  R + P     + ++D
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 20/239 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY T+IDG  ++GF+ +A ++  +M +    P ++TYN+LI+G C      +A  L
Sbjct: 376 PNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGL 435

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++RG   DVV+++ I+   C+N+++++A +L   M+  G+ PD      +  Y  L
Sbjct: 436 LQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPD------VATYSSL 489

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK  +L    +L Q +   GL P+ VTY   I+A C +  +DKA  L  +M  KG 
Sbjct: 490 IQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGF 549

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +P+ V +  L+  F +++ T +   LL              L ++ +  V NEI+ N++
Sbjct: 550 SPDIVTYNVLINGFNKQSRTKEAKRLL--------------LKLLYEESVPNEITYNTL 594



 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN ++YN +I+GLC+EG + +  E+  +M      P+ VT+N+LI+G+C   + ++A  L
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVL 330

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  GL  +VVT+  +++ +CK   ++ A   LD M   G+ P+         Y  L
Sbjct: 331 HAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNG------RTYTTL 384

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  + G LK A ++ + +   G  P ++TYN  I+  C   +M+ A  L  +M  +G 
Sbjct: 385 IDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF 444

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V ++T++  F R  E  K  +L   M  + + P  +  S ++  L K
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 120/217 (55%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+I+ +CK G +++A E   QM+D  ++PN  TY +LI GF       +A  +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++ G    ++T+N +++  C   +M++A+ LL  MI+ G  PD      +V+Y  +
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPD------VVSYSTI 454

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+  +L+ A +L   +   G+ P+V TY+  I  LC   ++ +  DLF +M   G+
Sbjct: 455 ISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGL 514

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V +T+L+ ++  + +  K + L   M ++   P
Sbjct: 515 PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSP 551



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV   PN  TYN +I G C  G ++     F +M+     PNVVTYN++I  +C    
Sbjct: 196 ESGV--SPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA  L   M  +GL  +++++NV+++ LC+  +M E + +L+ M +    PD      
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDR----- 308

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V +  LI+G C +G    A  L   + + GL PNVVTY   I+++C    +++A +   
Sbjct: 309 -VTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLD 367

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            M  +G+ PN   +TTL+  F ++    +  ++++ M +    P
Sbjct: 368 QMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTP 411



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 121/278 (43%), Gaps = 56/278 (20%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y+TII G C+   ++KA +L ++M  + I+P+V TY+SLI G C      E   L
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+  GL  D VT+  +++  C    +D+A RL D MIQ G  PD      IV Y  L
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPD------IVTYNVL 559

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN--------------------------- 166
           I+G  K  + K A+ L   L     +PN +TYN                           
Sbjct: 560 INGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLM 619

Query: 167 -----------------------ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
                                  + IH       ++KA++L+ +M   G AP+ V    L
Sbjct: 620 NEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMAL 679

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             S   + +  ++ +LL    K   +  A++  +++ +
Sbjct: 680 AKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGI 717



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 42/259 (16%)

Query: 6   REFGVVC-----------KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY 54
           R  G VC            P+ VTY ++I+  C EG +DKA  L  +M  +  +P++VTY
Sbjct: 497 RRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTY 556

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE---------------LCKN 99
           N LI+GF   +   EA+ L ++++      + +T+N ++D                 C  
Sbjct: 557 NVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMK 616

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             M+EA R+L+ M+Q G +      +N   Y  +I G  K+G ++ A  L + +  +G  
Sbjct: 617 GLMNEADRVLESMLQKGYK------LNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFA 670

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI-----RKNETS 214
           P+ VT      +L ++ +  + + L LD  +K    +C I    +   +     ++    
Sbjct: 671 PHSVTIMALAKSLYHEGKEVELNQL-LDYTLK----SCRITEAALAKVLIGINSKEGNMD 725

Query: 215 KVIELLRSMDKRNVMPYAS 233
            V  +L+ M    ++PY+S
Sbjct: 726 AVFNVLKDMALSGLLPYSS 744



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142
           +S    F++++    +   +++A  +++L    G  P       +++Y  ++D + +  +
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMP------GVLSYNAILDAVIRTKQ 182

Query: 143 -LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
            +K A  + + +  +G+ PNV TYNI I   C    ++     F +ME  G  PN V + 
Sbjct: 183 SVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYN 242

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           T++ ++ +  +  +  +LLR M  + + P
Sbjct: 243 TIIDAYCKLRKIGEAFKLLRLMALKGLNP 271


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 116/216 (53%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +I+G CK    D A  LF +M    I PNVVTYNSLI G C +   + A  L
Sbjct: 287 PDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKL 346

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG   D++T++ ++D LCKN   D+A  LL  +   G++P      N+  Y  L
Sbjct: 347 VDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQP------NMYTYTIL 400

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK G+ ++A+ + + L   G   NV TY + IH  CN+    +A  +   ME  G 
Sbjct: 401 INGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGC 460

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN V +  ++ S   K+E  K  +LL  M  R ++
Sbjct: 461 IPNAVTYEIIIRSLFDKDENDKAEKLLLEMITRGLL 496



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY++++DG C    V+KAK +F  M    +NP++ +YN LI+GFC     + A  
Sbjct: 251 KPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMN 310

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM  R +  +VVT+N ++D LCK+ K+  A +L+D M   G  PD      I+ Y  
Sbjct: 311 LFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPD------IITYSS 364

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D LCK      A  L   L   GL PN+ TY I I+ LC   + + A ++F D+ VKG
Sbjct: 365 LLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKG 424

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              N   +T ++  F       + + +L  M++   +P A    II+  L
Sbjct: 425 YNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSL 474



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 101/182 (55%), Gaps = 6/182 (3%)

Query: 23  IDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL 82
           +   CKEG V +AK +F  M  +   PNVVTY+SL+ G+C   + N+A+ +F  M   G+
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142
             D+ ++N++++  CK +  D A  L + M    + P      N+V Y  LIDGLCK GK
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIP------NVVTYNSLIDGLCKSGK 339

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           +  A +L   +   G  P+++TY+  + ALC +   DKA  L   ++ +G+ PN   +T 
Sbjct: 340 ISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTI 399

Query: 203 LM 204
           L+
Sbjct: 400 LI 401



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 6/187 (3%)

Query: 58  IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           +  FC      EA+ +F  MM +G + +VVT++ +MD  C  +++++A  + + M QGGV
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
            PD      I +Y  LI+G CKI     A  L + +    ++PNVVTYN  I  LC   +
Sbjct: 286 NPD------IQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGK 339

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +  A  L  +M  +G  P+ + +++L+ +  + +   K I LL  +  + + P     +I
Sbjct: 340 ISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTI 399

Query: 238 IVDLLVK 244
           +++ L K
Sbjct: 400 LINGLCK 406



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 15/183 (8%)

Query: 66  DGNEAEYLFIEMMDR--GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           D N     F+  M +  G+ + V TF       CK  K+ EA  +   M++ G +P    
Sbjct: 204 DVNNLRECFVSFMFQYLGMMAPVSTF-------CKEGKVKEAKNVFAAMMKKGFKP---- 252

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N+V Y  L+DG C + ++  A+ +  ++ + G+ P++ +YNI I+  C  +  D A +
Sbjct: 253 --NVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMN 310

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           LF +M  + + PN V + +L+    +  + S  ++L+  M  R   P     S ++D L 
Sbjct: 311 LFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALC 370

Query: 244 KNE 246
           KN 
Sbjct: 371 KNH 373



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 56/105 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY  +I+GLCK G  + A+ +F  +  +  N NV TY  +IH FC      EA  
Sbjct: 391 QPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALA 450

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           +  +M + G   + VT+ +I+  L    + D+A +LL  MI  G+
Sbjct: 451 MLSKMEENGCIPNAVTYEIIIRSLFDKDENDKAEKLLLEMITRGL 495


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 124/244 (50%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVTYN +I+ L +   +  A  +   M     +PN+VTYN +I G+C   D  +A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ RG  +++VT+N I+   C +     A R+LDLM  GG +PD +      +Y  L
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW------SYTEL 501

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CKI K+++A  L   +   GL PN VTY   I   C DE++D A  L   M+  G 
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN   +  L+    ++N  S   EL + M +  + P     + ++D L KN  +  ++ 
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 254 QFNR 257
            FN+
Sbjct: 622 MFNK 625



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 7/238 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  +Y  +I G CK   ++ A  LF +M D+ + PN VTY +LI G+C     + A 
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M   G + +V T+NV++  L K      A  L  +MI+ G+ P      N+V Y 
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFP------NVVTYT 604

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGLCK G    A E+   +   G +PN++TY+  I AL  + ++++A +LF ++E  
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 664

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
           G+ P+ + +  ++ ++I   +       L  M K    P      +++  L KNE  L
Sbjct: 665 GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYLL 721



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +I G C  G   KA  +   M     + N+VTYN++I G+C + +   A 
Sbjct: 421 CSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSAL 480

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M D G + D  ++  ++   CK  KM+ A  L + M+  G+ P      N V Y 
Sbjct: 481 RILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCP------NEVTYT 534

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK  KL  A  L + + R+G  PNV TYN+ IH L        A +L   M  +
Sbjct: 535 ALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEE 594

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           G+ PN V +T ++    +   TS  +E+   M ++  +P    Y+S++
Sbjct: 595 GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 33/261 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + YN +I+ LCK+G V  A+ +  ++ +  ++P+  TY S+I G C  +D + A  
Sbjct: 212 QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQ 271

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           +F +M   G + + VT++ +++ LC + +++EA  L+  MI  G+ P A           
Sbjct: 272 VFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC 331

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              CE N+  Y  LI GLC  G LK A  L   ++R G+ PN V
Sbjct: 332 DMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTV 391

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  I+ L  + ++  A  +   M   G +PN V +  ++  +    +  K + ++ +M
Sbjct: 392 TYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNM 451

Query: 224 DKR----NVMPYASILSIIVD 240
            +R    N++ Y +I+    D
Sbjct: 452 LQRGHSANLVTYNTIIKGYCD 472



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EAEYLFI 75
            Y+ ++  L + G      + + +M  E + PN++ YN++I+  C   DGN  +AE +  
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC--KDGNVADAETIMK 239

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           ++ +  +  D  T+  ++   C+   +D A ++ + M + G      CE N V Y  LI+
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG------CEPNTVTYSTLIN 293

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLC  G++  A +L + +   G++P   T    I ALC+    + A  LF+DM+ KG  P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           N   +T L+            I L   M +  V P     + ++++LV+N 
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENR 404



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 16/189 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN  TYN +I GL K+     A+EL   M +E I PNVVTY ++I G C     + A 
Sbjct: 561 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 620

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+++G   +++T++ ++  L +  K++EA  L   + + G+ PD       + Y 
Sbjct: 621 EMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE------ITYV 674

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+     GK+++A      + +AG  P + TY + I  L N+        L  D  + 
Sbjct: 675 KMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEY-------LLADQRLA 727

Query: 192 G---VAPNC 197
               V PNC
Sbjct: 728 ALPDVVPNC 736



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 30/229 (13%)

Query: 12  CKPNTVTYNTIIDGL--------------------CKEGF--VDKAKELFLQMKDENINP 49
           C+P   TY  +I GL                    C  G+   D+     +  K   ++P
Sbjct: 701 CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 760

Query: 50  --NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
             +V   N+L+     A    EA  L   M+ +GL  D   +N ++  L + R +D A  
Sbjct: 761 GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMG 820

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           +   M   G      CE+++  Y  LI  LC++ + K AR   +++      P+ V   +
Sbjct: 821 VFKHMSTQG------CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAV 874

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
            I  L  D   D   +    ME +   P+  I+T L     +K     V
Sbjct: 875 LIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASKKRSWKHV 923



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 97  CKNRK-MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           C +++ M      LD++ Q G+R      + + AY  L+  L ++G      +    +  
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLR------MGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 208

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G+ PN++ YN  I+ALC D  +  A  +   +    ++P+   +T+++    RK++   
Sbjct: 209 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 268

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLL 242
            +++   M K    P     S +++ L
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGL 295


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 129/240 (53%), Gaps = 23/240 (9%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N+VTYN++IDG CKEG +DKA E+  QM +  + PNV+T+++LI G+C   +   A  ++
Sbjct: 391 NSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIY 450

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ + L  DVVT+  ++D  CK   M EA +L   M+  G+ P+ +         CL+
Sbjct: 451 SEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCY------TISCLL 504

Query: 135 DGLCKIGKLKNARELSQ----------SLTRAGLMP---NVVTYNITIHALCNDEQMDKA 181
           DGLCK GK+ +A EL            ++   G  P   N V Y   IH LC D Q  KA
Sbjct: 505 DGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKA 564

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS-MDKRNVMPYASILSIIVD 240
             LF DM   G+ P+ VI+  ++       +   ++ +L + M K  V+P +++  I+ +
Sbjct: 565 VKLFSDMRRYGLQPDEVIYVVMLRGLF---QVKYILMMLHADMLKFGVIPNSAVHVILCE 621



 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +T+ T+IDG C++G + +A+E+F +M+ + I P V+ Y  LI G C  N   EAE +
Sbjct: 180 PSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESM 239

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M + G+  +V T+N +MD  CK     +A RL   M+  G+ PD      +V +G L
Sbjct: 240 HRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPD------VVTFGIL 293

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G++K AR L  ++ +  + PN+  YN  I A C    + +A  LFL++E   V
Sbjct: 294 IDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEV 353

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +P+   ++ L+      + T +   +   M K  ++  +   + ++D
Sbjct: 354 SPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLID 400



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+  +IDGLCK G +  A+ LF+ M   ++ PN+  YNSLI  +C   D +EA  L
Sbjct: 285 PDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMAL 344

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+E+    +  DV T+++++  LC   + +EA  + + M + G+        N V Y  L
Sbjct: 345 FLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILA------NSVTYNSL 398

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK GK+  A E+   +T  G+ PNV+T++  I   C    +  A  ++ +M +K +
Sbjct: 399 IDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSL 458

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +P+ V +T ++    +     + ++L   M    + P    +S ++D L K+
Sbjct: 459 SPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKD 510



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 109/207 (52%), Gaps = 6/207 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   YN++ID  CK G V +A  LFL+++   ++P+V TY+ LI G C  +   EA  +
Sbjct: 320 PNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNI 379

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M   G+ ++ VT+N ++D  CK  KMD+A  +   M + GV P      N++ +  L
Sbjct: 380 FEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEP------NVITFSTL 433

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CKI  L+ A  +   +    L P+VVTY   I   C    M +A  L+ DM   G+
Sbjct: 434 IDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGI 493

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELL 220
            PNC   + L+    +  + S  +EL 
Sbjct: 494 TPNCYTISCLLDGLCKDGKISDALELF 520



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 15/201 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +T++T+IDG CK   +  A  ++ +M  ++++P+VVTY ++I G C      EA  
Sbjct: 424 EPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALK 483

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ----------GGVRPDAF 122
           L+ +M+D G+  +  T + ++D LCK+ K+ +A  L    I+          GG +P   
Sbjct: 484 LYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSL- 542

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N VAY  LI GLC+ G+   A +L   + R GL P+ V Y + +  L   + +    
Sbjct: 543 --TNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYILMM- 599

Query: 183 DLFLDMEVKGVAPNCVIFTTL 203
            L  DM   GV PN  +   L
Sbjct: 600 -LHADMLKFGVIPNSAVHVIL 619



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 41  QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           ++K     PNV  Y  LI   C      EA  ++ ++   G    +   NV++  L K  
Sbjct: 107 RLKSSKFTPNV--YGELIIVLCKMELVEEALSMYHKV---GAALTIQACNVLLYVLVKTG 161

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           + +   R+ + MI  G+ P      +++ +G LIDG C+ G L  A+E+   +   G++P
Sbjct: 162 RFELLWRIYEEMISNGLSP------SVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVP 215

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            V+ Y I I  LC+D ++++A  +   M   GV PN   + TLM  + +     + + L 
Sbjct: 216 TVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLY 275

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
           + M    ++P      I++D L K
Sbjct: 276 QDMLGEGLVPDVVTFGILIDGLCK 299



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   Y  +I  LCK   V++A  ++ ++        +   N L++             +
Sbjct: 115 PNV--YGELIIVLCKMELVEEALSMYHKV---GAALTIQACNVLLYVLVKTGRFELLWRI 169

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+  GL   V+TF  ++D  C+   +  A  + D M   G+ P       ++ Y  L
Sbjct: 170 YEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVP------TVIVYTIL 223

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC   K++ A  + +++   G+ PNV TYN  +   C      +A  L+ DM  +G+
Sbjct: 224 IRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGL 283

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V F  L+    +  E      L  +M K +V P  ++ + ++D   K
Sbjct: 284 VPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCK 334


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           + G + +PNTVTYN +IDG  K G  D+A ELF QM +E + PNV+T N+L+ G C    
Sbjct: 384 KMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGR 443

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A   F EM  +GL+ +  T+  ++   C    ++ A +  + M+  G  PDA     
Sbjct: 444 VHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDA----- 498

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  LI GLC  G++ +A  +   L  AG   +   YN+ I   C  +++++ ++L  
Sbjct: 499 -VVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLT 557

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +ME  GV P+ + + TL+    +  + +   +++  M K  + P       I+
Sbjct: 558 EMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAII 610



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 125/268 (46%), Gaps = 46/268 (17%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE--------------------NIN---- 48
           +PN +T NT++DGLCK G V +A E F +MK +                    NIN    
Sbjct: 425 QPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQ 484

Query: 49  -----------PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                      P+ V Y SLI G C A   N+A  +  ++   G   D   +NV++   C
Sbjct: 485 CFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFC 544

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K +K++    LL  M + GV+PD       + Y  LI  L K G    A ++ + + + G
Sbjct: 545 KKKKLERVYELLTEMEETGVKPDT------ITYNTLISYLGKTGDFATASKVMEKMIKEG 598

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           L P+VVTY   IHA C+ + +D+   +F +M     V PN VI+  L+ +  R N+  + 
Sbjct: 599 LRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRA 658

Query: 217 IELLRSMDKRNVMP----YASILSIIVD 240
           I L+  M  + V P    Y +IL  + D
Sbjct: 659 ISLMEDMKVKRVRPNTTTYNAILKGVRD 686



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 9/243 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN-PNVVTYNSLIHGF 61
            G+   GV  +P+ V +NT+IDGLCK G  +    L  +MK  NIN PN VTYN LI GF
Sbjct: 346 GGSNWVGV--EPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGF 403

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
             A + + A  LF +M + G+Q +V+T N ++D LCK+ ++  A    + M   G++ +A
Sbjct: 404 FKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNA 463

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                   Y  LI   C +  +  A +  + +  +G  P+ V Y   I  LC   +M+ A
Sbjct: 464 ------ATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDA 517

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             +   +++ G + +   +  L+  F +K +  +V ELL  M++  V P     + ++  
Sbjct: 518 SVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISY 577

Query: 242 LVK 244
           L K
Sbjct: 578 LGK 580



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 121/246 (49%), Gaps = 14/246 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  + N ++  L +   + +  EL  +M+   I P+VVT+  L++  C A   +EA  +F
Sbjct: 280 DAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVF 339

Query: 75  IEMMDRG------LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV-RPDAFCEINI 127
             +  +G      ++ DVV FN ++D LCK  K ++   LL+ M  G + RP      N 
Sbjct: 340 DRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRP------NT 393

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y CLIDG  K G    A EL + +   G+ PNV+T N  +  LC   ++ +A + F +
Sbjct: 394 VTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNE 453

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI-LSIIVDLLVKNE 246
           M+ KG+  N   +T L+ +F   N  ++ ++    M      P A +  S+I  L +   
Sbjct: 454 MKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGR 513

Query: 247 ISLNSI 252
           ++  S+
Sbjct: 514 MNDASV 519



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           L  ++ +  + P+      L+   C       A  +   +M  G   D  + N ++  L 
Sbjct: 233 LVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNALLTWLG 292

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL---- 153
           + R +     LL  M +  +RP      ++V +G L++ LCK  ++  A ++   L    
Sbjct: 293 RGRDIKRMNELLAEMEKRKIRP------SVVTFGILVNHLCKARRIDEALQVFDRLRGKG 346

Query: 154 --TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV-APNCVIFTTLMPSFIRK 210
                G+ P+VV +N  I  LC   + +    L  +M++  +  PN V +  L+  F + 
Sbjct: 347 GSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKA 406

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
               +  EL R M++  V P    L+ +VD L K+     ++  FN  K
Sbjct: 407 GNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMK 455



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 5/98 (5%)

Query: 4   GNREFGVVCK-----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI 58
           G + FG +C      PNTV YN +ID LC+   VD+A  L   MK + + PN  TYN+++
Sbjct: 622 GMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAIL 681

Query: 59  HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
            G       ++A  L   M++   + D +T  V+ + L
Sbjct: 682 KGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWL 719


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAEY 72
           N  TY  +I+G  K G      EL+ +MK   I PNV TYNS+I   C  NDG  N A  
Sbjct: 220 NQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCC--NDGKLNNAFE 277

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM +RG+  +VVT+N ++  LC+ R++ EA RL+  M + G+ P      N+++Y  
Sbjct: 278 LFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSP------NLISYNT 331

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C IG L  A  L   +  +G  P++ TYNI I      +      D+  +ME +G
Sbjct: 332 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 391

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           ++P+ V +T LM + +R +   K  ++  SM+K  ++    I  +++  L
Sbjct: 392 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGL 441



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y T+IDG CK G +++ K+LF +M + ++  N  TY  LI+GF       +   L
Sbjct: 184 PNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIEL 243

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M   G+  +V T+N ++   C + K++ A  L D M + GV        N+V Y  L
Sbjct: 244 YEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGV------ACNVVTYNTL 297

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+  ++  A  L   + R GL PN+++YN  I   C+   +DKA  LF  M+  G 
Sbjct: 298 IGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQ 357

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +P+   +  L+  F     ++ V +++R M+ R + P     +I++D LV+++
Sbjct: 358 SPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSD 410



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN ++YNT+IDG C  G +DKA  LF QMK    +P++ TYN LI GF  A +      +
Sbjct: 324 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM 383

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RGL    VT+ ++MD L ++  +++A ++   M + G+  D      I  YG L
Sbjct: 384 VREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVAD------IYIYGVL 437

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC +G +K A +L +SL    L PN V YN  I+  C +    +A  L  +M   G+
Sbjct: 438 IHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGM 497

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            PN   + + +    +  + ++   LL+ M +  + P  SI ++I
Sbjct: 498 VPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 542



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 132/241 (54%), Gaps = 8/241 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV C  N VTYNT+I GLC+E  V +A+ L  +MK + ++PN+++YN+LI G+C   
Sbjct: 283 RERGVAC--NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIG 340

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + ++A  LF +M   G    + T+N+++    + +     T ++  M   G+ P      
Sbjct: 341 NLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSK---- 396

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V Y  L+D L +   ++ A ++  S+ +AGL+ ++  Y + IH LC    M +A  LF
Sbjct: 397 --VTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLF 454

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             ++   + PN VI+ T++  + ++  + + + LL+ M +  ++P  +  +  + +L K+
Sbjct: 455 KSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKD 514

Query: 246 E 246
           E
Sbjct: 515 E 515



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 15/230 (6%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+  G    P + T+N ++  L K  F +KA  +F + K  N+  +V ++  +I G C  
Sbjct: 106 NQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKG-NVKLDVYSFGIMIKGCCEV 164

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++   +  +M + GL  +VV +  ++D  CKN  ++   +L   M           E
Sbjct: 165 GYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM----------GE 214

Query: 125 INIVA----YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           +++VA    Y  LI+G  K+G  K+  EL + +   G++PNV TYN  I   CND +++ 
Sbjct: 215 LDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNN 274

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A +LF +M  +GVA N V + TL+    ++    +   L+  M +  + P
Sbjct: 275 AFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSP 324



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 7/181 (3%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           +V+ + ++I+    +    +A +   +M+ RGL     TFN ++  L K+   ++A R+ 
Sbjct: 81  HVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVF 140

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           +   +G V+ D +      ++G +I G C++G L    E+   +   GL PNVV Y   I
Sbjct: 141 N-ETKGNVKLDVY------SFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLI 193

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              C +  +++   LF  M    V  N   +T L+  F +       IEL   M    ++
Sbjct: 194 DGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIV 253

Query: 230 P 230
           P
Sbjct: 254 P 254



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 46/80 (57%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V YNT+I G CKEG   +A  L  +M +  + PNV +YNS I   C      EAE 
Sbjct: 463 KPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEV 522

Query: 73  LFIEMMDRGLQSDVVTFNVI 92
           L  +M++ GL+  +  +N+I
Sbjct: 523 LLKDMIELGLKPSISIWNMI 542



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/106 (20%), Positives = 51/106 (48%)

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
           T+  +  +V ++ I I   C    +DK  ++   ME  G++PN V++TTL+    +  + 
Sbjct: 143 TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDI 202

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            +  +L   M + +V+      +++++   K  +  + I  + + K
Sbjct: 203 ERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMK 248


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 126/260 (48%), Gaps = 43/260 (16%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G  C  NTVTYN +I GLC+ G V++A      M+D  + P+  TY +LI+G C + 
Sbjct: 249 RERG--CGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 306

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             NEA+ L  EM    L+ +VV +  ++D   +    DEA +++  M+  GV+P      
Sbjct: 307 RSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQP------ 360

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTR------------------------------ 155
           N + Y  L+ GLCK+G++  A  L + + R                              
Sbjct: 361 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLL 420

Query: 156 -----AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                AG+ PNV TY+I IH LC   + +KA DL  +M  KG+ PN  ++  L+  + R+
Sbjct: 421 SEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCRE 480

Query: 211 NETSKVIELLRSMDKRNVMP 230
              S   E+   M K NV+P
Sbjct: 481 GNVSLACEIFDKMTKVNVLP 500



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 130/256 (50%), Gaps = 29/256 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TY+ ++ GLCK G +D+A  L  QM  ++  P+ +TYN +I G    +   +A  
Sbjct: 359 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 418

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L  EM + G+  +V T+++++  LC++ + ++A+ LL+ M   G++P+AF          
Sbjct: 419 LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 478

Query: 123 --------CEI-----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                   CEI           ++  Y  LI GL K+G+++ + +    +   GL+PN  
Sbjct: 479 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 538

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY+  IH    +  ++ A  L   M   G+ PN VI+  L+ S+ + ++  KV    +SM
Sbjct: 539 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 598

Query: 224 DKRNVMPYASILSIIV 239
             + VM    I  I++
Sbjct: 599 LDQGVMLDNRIYGILI 614



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y  +IDG  +EG  D+A ++  +M    + PN +TY++L+ G C     + A  
Sbjct: 324 KPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASL 383

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+    + D +T+N+I++   ++    +A RLL  M   G+ P      N+  Y  
Sbjct: 384 LLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISP------NVYTYSI 437

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLC+ G+ + A +L + +T  GL PN   Y   I   C +  +  A ++F  M    
Sbjct: 438 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 497

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P+   + +L+    +     +  +    M +R ++P     S ++   +KN
Sbjct: 498 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 550



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY+ +I G  K G ++ A++L  +M D  + PN V Y  L+  +  ++D  +    
Sbjct: 535 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 594

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+D+G+  D   + +++  L  +  M+ A R+L  + + G  PD      +  Y  L
Sbjct: 595 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPD------VHVYSSL 648

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK    + A  +   +++ G+ PN+V YN  I  LC    +  A ++F  +  KG+
Sbjct: 649 ISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGL 708

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PNCV +T+L+    +  + S    L   M    + P A + S++ 
Sbjct: 709 VPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLT 754



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 29/257 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   Y  +I G C+EG V  A E+F +M   N+ P++  YNSLI G        E+  
Sbjct: 464 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 523

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA--- 129
            F +M +RGL  +  T++ ++    KN  ++ A +L+  M+  G++P+    I+++    
Sbjct: 524 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF 583

Query: 130 --------------------------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                     YG LI  L   G ++ A  +   + + G +P+V 
Sbjct: 584 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVH 643

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            Y+  I  LC     +KA  +  +M  KGV PN V +  L+    +  + S    +  S+
Sbjct: 644 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 703

Query: 224 DKRNVMPYASILSIIVD 240
             + ++P     + ++D
Sbjct: 704 LAKGLVPNCVTYTSLID 720



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 30/228 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y+++I GLCK    +KA  +  +M  + ++PN+V YN+LI G C + D + A  +
Sbjct: 640 PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNV 699

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
           F  ++ +GL  + VT+  ++D  CK   +  A  L + M+  G+ PDAF   +++  GC 
Sbjct: 700 FNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFV-YSVLTTGCS 758

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       L+DG CK GK++   +L   +   GL+PN +T
Sbjct: 759 SAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALT 818

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
               I  L    ++ + H +F++++ K        F++L    I + +
Sbjct: 819 IENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGK 866



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 122/290 (42%), Gaps = 68/290 (23%)

Query: 2   ANGNREFGVV-------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY 54
           A+  + FG++         PN V YN +IDGLCK G +  A+ +F  +  + + PN VTY
Sbjct: 656 ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTY 715

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            SLI G C   D + A YL+ EM+  G+  D   ++V+         +++A  L++ M  
Sbjct: 716 TSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFL 775

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            G         +I ++  L+DG CK GK++   +L   +   GL+PN +T    I  L  
Sbjct: 776 RG-------HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSE 828

Query: 175 DEQMDKAH-------------------DLFLDMEVKGVAP-------------------- 195
             ++ + H                    LF+DM  +G  P                    
Sbjct: 829 AGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKA 888

Query: 196 --------------NCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMP 230
                          C  +  ++ +  RK + S+ + LL+ MDKR N+ P
Sbjct: 889 LMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQP 938



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 64/297 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+TYN II+G  +      A  L  +M++  I+PNV TY+ +IHG C + +  +A  
Sbjct: 394 RPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASD 453

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV---- 128
           L  EM  +GL+ +   +  ++   C+   +  A  + D M +  V PD +C  +++    
Sbjct: 454 LLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLS 513

Query: 129 -------------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                     Y  LI G  K G L++A +L Q +   GL PN V
Sbjct: 514 KVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 573

Query: 164 -----------------------------------TYNITIHALCNDEQMDKAHDLFLDM 188
                                               Y I IH L +   M+ A  +   +
Sbjct: 574 IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGI 633

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           E  G  P+  ++++L+    +  +  K   +L  M K+ V P     + ++D L K+
Sbjct: 634 EKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 690



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 13/227 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN-EAE 71
           KPN V Y  +++   K   ++K    F  M D+ +  +   Y  LIH    ++ GN EA 
Sbjct: 569 KPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNL--SSSGNMEAA 626

Query: 72  YLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           +  +  +++ G   DV  ++ ++  LCK    ++A  +LD M + GV P      NIV Y
Sbjct: 627 FRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDP------NIVCY 680

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDGLCK G +  AR +  S+   GL+PN VTY   I   C    +  A  L+ +M  
Sbjct: 681 NALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLA 740

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
            G+ P+  +++ L        +  + + L+  M  R    +ASI S 
Sbjct: 741 TGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG---HASISSF 784



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           + S +  +C   + + A+ + +EM +RG   + VT+NV++  LC++  ++EA      M 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             G+ PD F       YG LI+GLCK  +   A+ L   ++ A L PNVV Y   I    
Sbjct: 285 DYGLVPDGF------TYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFM 338

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            +   D+A  +  +M   GV PN + +  L+    +  +  +   LL+ M + +  P   
Sbjct: 339 REGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTI 398

Query: 234 ILSIIVD 240
             ++I++
Sbjct: 399 TYNLIIE 405


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 126/260 (48%), Gaps = 43/260 (16%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G  C  NTVTYN +I GLC+ G V++A      M+D  + P+  TY +LI+G C + 
Sbjct: 271 RERG--CGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 328

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             NEA+ L  EM    L+ +VV +  ++D   +    DEA +++  M+  GV+P      
Sbjct: 329 RSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQP------ 382

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTR------------------------------ 155
           N + Y  L+ GLCK+G++  A  L + + R                              
Sbjct: 383 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLL 442

Query: 156 -----AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                AG+ PNV TY+I IH LC   + +KA DL  +M  KG+ PN  ++  L+  + R+
Sbjct: 443 SEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCRE 502

Query: 211 NETSKVIELLRSMDKRNVMP 230
              S   E+   M K NV+P
Sbjct: 503 GNVSLACEIFDKMTKVNVLP 522



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 130/256 (50%), Gaps = 29/256 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TY+ ++ GLCK G +D+A  L  QM  ++  P+ +TYN +I G    +   +A  
Sbjct: 381 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 440

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L  EM + G+  +V T+++++  LC++ + ++A+ LL+ M   G++P+AF          
Sbjct: 441 LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 500

Query: 123 --------CEI-----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                   CEI           ++  Y  LI GL K+G+++ + +    +   GL+PN  
Sbjct: 501 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 560

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY+  IH    +  ++ A  L   M   G+ PN VI+  L+ S+ + ++  KV    +SM
Sbjct: 561 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 620

Query: 224 DKRNVMPYASILSIIV 239
             + VM    I  I++
Sbjct: 621 LDQGVMLDNRIYGILI 636



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y  +IDG  +EG  D+A ++  +M    + PN +TY++L+ G C     + A  
Sbjct: 346 KPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASL 405

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+    + D +T+N+I++   ++    +A RLL  M   G+ P      N+  Y  
Sbjct: 406 LLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISP------NVYTYSI 459

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLC+ G+ + A +L + +T  GL PN   Y   I   C +  +  A ++F  M    
Sbjct: 460 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 519

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P+   + +L+    +     +  +    M +R ++P     S ++   +KN
Sbjct: 520 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 572



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY+ +I G  K G ++ A++L  +M D  + PN V Y  L+  +  ++D  +    
Sbjct: 557 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 616

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+D+G+  D   + +++  L  +  M+ A R+L  + + G  PD      +  Y  L
Sbjct: 617 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPD------VHVYSSL 670

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK    + A  +   +++ G+ PN+V YN  I  LC    +  A ++F  +  KG+
Sbjct: 671 ISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGL 730

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PNCV +T+L+    +  + S    L   M    + P A + S++ 
Sbjct: 731 VPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLT 776



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 121/289 (41%), Gaps = 67/289 (23%)

Query: 2   ANGNREFGVV-------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY 54
           A+  + FG++         PN V YN +IDGLCK G +  A+ +F  +  + + PN VTY
Sbjct: 678 ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTY 737

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            SLI G C   D + A YL+ EM+  G+  D   ++V+         +++A  L++ M  
Sbjct: 738 TSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFL 797

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            G         +I ++  L+DG CK GK++   +L   +   GL+PN +T    I  L  
Sbjct: 798 RG-------HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSE 850

Query: 175 DEQMDKAH-------------------DLFLDMEVKGVAP-------------------- 195
             ++ + H                    LF+DM  +G  P                    
Sbjct: 851 AGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKA 910

Query: 196 --------------NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
                          C  +  ++ +  RK + S+ + LL+ MDKR + P
Sbjct: 911 LMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICP 959



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   Y  +I G C+EG V  A E+F +M   N+ P++  YNSLI G        E+  
Sbjct: 486 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 545

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M +RGL  +  T++ ++    KN  ++ A +L+  M+  G++P      N V Y  
Sbjct: 546 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP------NDVIYID 599

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++   K   ++      +S+   G+M +   Y I IH L +   M+ A  +   +E  G
Sbjct: 600 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNG 659

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             P+  ++++L+    +  +  K   +L  M K+ V P     + ++D L K+
Sbjct: 660 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 712



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 30/228 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y+++I GLCK    +KA  +  +M  + ++PN+V YN+LI G C + D + A  +
Sbjct: 662 PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNV 721

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
           F  ++ +GL  + VT+  ++D  CK   +  A  L + M+  G+ PDAF   +++  GC 
Sbjct: 722 FNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFV-YSVLTTGCS 780

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       L+DG CK GK++   +L   +   GL+PN +T
Sbjct: 781 SAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALT 840

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
               I  L    ++ + H +F++++ K        F++L    I + +
Sbjct: 841 IENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGK 888



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 6/211 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           + ++D   K G V  A E+ L M+D  + P++   N+L+     A+       +   M+ 
Sbjct: 178 DVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVG 237

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G+  DV T++ +++  CK R+ D A ++L  M + G      C +N V Y  LI GLC+
Sbjct: 238 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERG------CGLNTVTYNVLIAGLCR 291

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G ++ A    + +   GL+P+  TY   I+ LC   + ++A  L  +M    + PN V+
Sbjct: 292 SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVV 351

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +  L+  F+R+    +  ++++ M    V P
Sbjct: 352 YANLIDGFMREGNADEAFKMIKEMVAAGVQP 382



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 6/199 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M    I+P+V TY++LI  +C   + + A+ + +EM +RG   + VT+NV++  LC++  
Sbjct: 235 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 294

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           ++EA      M   G+ PD F       YG LI+GLCK  +   A+ L   ++ A L PN
Sbjct: 295 VEEAFGFKKDMEDYGLVPDGF------TYGALINGLCKSRRSNEAKALLDEMSCAELKPN 348

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VV Y   I     +   D+A  +  +M   GV PN + +  L+    +  +  +   LL+
Sbjct: 349 VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLK 408

Query: 222 SMDKRNVMPYASILSIIVD 240
            M + +  P     ++I++
Sbjct: 409 QMVRDSHRPDTITYNLIIE 427



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 13/227 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN-EAE 71
           KPN V Y  +++   K   ++K    F  M D+ +  +   Y  LIH    ++ GN EA 
Sbjct: 591 KPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNL--SSSGNMEAA 648

Query: 72  YLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           +  +  +++ G   DV  ++ ++  LCK    ++A  +LD M + GV P      NIV Y
Sbjct: 649 FRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDP------NIVCY 702

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDGLCK G +  AR +  S+   GL+PN VTY   I   C    +  A  L+ +M  
Sbjct: 703 NALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLA 762

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
            G+ P+  +++ L        +  + + L+  M  R    +ASI S 
Sbjct: 763 TGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG---HASISSF 806



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 24/162 (14%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++N ++DG CK G + +  +L   +    + PN +T  ++I G   A   +E   +F+E+
Sbjct: 805 SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL 864

Query: 78  MDRGLQSDVVTFN-VIMD-----------------ELCKNRKMDEATRLLDLMIQGGVRP 119
             +  +S    F+ + MD                 + CK   +D+A  L D+++      
Sbjct: 865 QQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSA-- 922

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
                +   +Y  ++D LC+ GKL  A  L + + + G+ P+
Sbjct: 923 ----PMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPS 960



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           + D G +S  V  +V++D   K+ ++ +A  ++ +M   G+ P   C         L+  
Sbjct: 166 LSDSGHRSPAV-LDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRC------CNALLKD 218

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           L +   +    ++ + +  AG+ P+V TY+  I A C   + D A  + ++M  +G   N
Sbjct: 219 LLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLN 278

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            V +  L+    R     +     + M+   ++P       +++ L K+  S
Sbjct: 279 TVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 330


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN + +N I+D LCKEG   +A      M+   ++P +VTYN LI GFC     + A 
Sbjct: 41  CFPNALVFNGIMDALCKEGRSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRAL 100

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM  RG + + VT+N  +  LCK  K+D+A  L   M +  +R D +       Y 
Sbjct: 101 EILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVY------GYT 154

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLC+ GKL  A  L   +  +G +P    YN  +  LC   ++++AH LF  M   
Sbjct: 155 TLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGS 214

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G+ P+ + F  ++  + R +     + LL+ M    + P   I + ++D L
Sbjct: 215 GILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDAL 265



 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  GV   P  VTYN +IDG CKE  + +A E+  +M      PN VTYN+ +HG C   
Sbjct: 72  RSMGV--SPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYG 129

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++A  LF  M ++ ++ DV  +  ++D LC+  K+ EA  LLD M   G  P   C  
Sbjct: 130 KVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC-- 187

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y  ++  LCK  ++  A +L + +T +G++P+ +T+ + +   C   ++D A  L 
Sbjct: 188 ----YNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLL 243

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
             M+  G+AP  VI+ TL+ +  R    S+   LL+ M  R + P +   +++
Sbjct: 244 QQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 108/210 (51%), Gaps = 14/210 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYNT + GLCK G VD A  LF  M ++ I  +V  Y +LI G C A    EA  
Sbjct: 112 EPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYS 171

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM + G       +N I+  LCK  +++EA +L   M   G+ PD       + +G 
Sbjct: 172 LLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPD------WLTFGM 225

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ G C+  ++ +A  L Q +  AGL P  V YN  I AL    ++ +A+ L  +M  +G
Sbjct: 226 MVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRG 285

Query: 193 VAPNCVIFTTLMPSFIRKNETSK---VIEL 219
           ++PN   +     + +RK +T     V+EL
Sbjct: 286 LSPNSRTY-----ALMRKQQTDDSNLVVEL 310



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 98/204 (48%), Gaps = 6/204 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M ++   P VVT+  L+ G C AN   +A  L   M +RG   + + FN IMD LCK  +
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
             EA   ++ M   GV P       IV Y  LIDG CK  KL  A E+ Q +T  G  PN
Sbjct: 61  SAEAYGYIETMRSMGVSP------TIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPN 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
            VTYN  +H LC   ++D A  LF  M  K +  +   +TTL+    +  + ++   LL 
Sbjct: 115 HVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLD 174

Query: 222 SMDKRNVMPYASILSIIVDLLVKN 245
            M+    +P     + I+  L K 
Sbjct: 175 EMENSGCVPKPGCYNAILSWLCKG 198



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 45/94 (47%)

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G +P VVT+ I +  LC   ++  A +L   M  +G  PN ++F  +M +  ++  
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +++    + +M    V P     +I++D   K E
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEE 94


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAEY 72
           N  TY  +I+G  K G      EL+ +MK   I PNV TYNS+I   C  NDG  N A  
Sbjct: 233 NQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCC--NDGKLNNAFE 290

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM +RG+  +VVT+N ++  LC+ R++ EA RL+  M + G+ P      N+++Y  
Sbjct: 291 LFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSP------NLISYNT 344

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C IG L  A  L   +  +G  P++ TYNI I      +      D+  +ME +G
Sbjct: 345 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 404

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           ++P+ V +T LM + +R +   K  ++  SM+K  ++    I  +++
Sbjct: 405 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLI 451



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y T+IDG CK G +++ K+LF +M + ++  N  TY  LI+GF       +   L
Sbjct: 197 PNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIEL 256

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M   G+  +V T+N ++   C + K++ A  L D M + GV        N+V Y  L
Sbjct: 257 YEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGV------ACNVVTYNTL 310

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+  ++  A  L   + R GL PN+++YN  I   C+   +DKA  LF  M+  G 
Sbjct: 311 IGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQ 370

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +P+   +  L+  F     ++ V +++R M+ R + P     +I++D LV+++
Sbjct: 371 SPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSD 423



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN ++YNT+IDG C  G +DKA  LF QMK    +P++ TYN LI GF  A +      +
Sbjct: 337 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM 396

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RGL    VT+ ++MD L ++  +++A ++   M + G+  D      I  YG L
Sbjct: 397 VREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVAD------IYIYGVL 450

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC +G +K A +L +SL    L PN V YN  I+  C +    +A  L  +M   G+
Sbjct: 451 IHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGM 510

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            PN   + + +    +  + ++   LL+ M +  + P  SI ++I
Sbjct: 511 VPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 555



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 132/241 (54%), Gaps = 8/241 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV C  N VTYNT+I GLC+E  V +A+ L  +MK + ++PN+++YN+LI G+C   
Sbjct: 296 RERGVAC--NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIG 353

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + ++A  LF +M   G    + T+N+++    + +     T ++  M   G+ P      
Sbjct: 354 NLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSK---- 409

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V Y  L+D L +   ++ A ++  S+ +AGL+ ++  Y + IH LC    M +A  LF
Sbjct: 410 --VTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLF 467

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             ++   + PN VI+ T++  + ++  + + + LL+ M +  ++P  +  +  + +L K+
Sbjct: 468 KSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKD 527

Query: 246 E 246
           E
Sbjct: 528 E 528



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 15/230 (6%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+  G    P + T+N ++  L K  F +KA  +F + K  N+  +V ++  +I G C  
Sbjct: 119 NQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKG-NVKLDVYSFGIMIKGCCEV 177

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++   +  +M + GL  +VV +  ++D  CKN  ++   +L   M           E
Sbjct: 178 GYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM----------GE 227

Query: 125 INIVA----YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           +++VA    Y  LI+G  K+G  K+  EL + +   G++PNV TYN  I   CND +++ 
Sbjct: 228 LDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNN 287

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A +LF +M  +GVA N V + TL+    ++    +   L+  M +  + P
Sbjct: 288 AFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSP 337



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 7/181 (3%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           +V+ + ++I+    +    +A + F +M+ RGL     TFN ++  L K+   ++A R+ 
Sbjct: 94  HVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVF 153

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           +   +G V+ D +      ++G +I G C++G L    E+   +   GL PNVV Y   I
Sbjct: 154 N-ETKGNVKLDVY------SFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLI 206

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              C +  +++   LF  M    V  N   +T L+  F +       IEL   M    ++
Sbjct: 207 DGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIV 266

Query: 230 P 230
           P
Sbjct: 267 P 267



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 46/80 (57%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V YNT+I G CKEG   +A  L  +M +  + PNV +YNS I   C      EAE 
Sbjct: 476 KPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEV 535

Query: 73  LFIEMMDRGLQSDVVTFNVI 92
           L  +M++ GL+  +  +N+I
Sbjct: 536 LLKDMIELGLKPSISIWNMI 555


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 7/217 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N +IDG  K+  +  + ++F +M D+++ PNV+TYNSLI+G C     NEA  +
Sbjct: 294 PNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGM 353

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G+Q +++T++ +++  CKN  M EA  + D +   G RP          Y  L
Sbjct: 354 RDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRP------TTRMYNML 407

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  CK+GK+ +   L + + R G++P+V TYN  I  LC +  ++ A  LF  +  KG+
Sbjct: 408 IDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL 467

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V F  LM  +  + E+ K   LL+ M K  + P
Sbjct: 468 -PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKP 503



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC-YANDGN--E 69
           +PN  T+N +I+ LCK G ++KA+++   MK    +PNVV+YN+LI G+C    +G   +
Sbjct: 220 QPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYK 279

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ +  EM++  +  ++ TFN+++D   K+  +  + ++   M+   V P      N++ 
Sbjct: 280 ADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIP------NVIT 333

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI+GLC  GK+  A  +   +  AG+ PN++TY+  I+  C +  M +A D+F  ++
Sbjct: 334 YNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVK 393

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +G  P   ++  L+ ++ +  +      L   M++  ++P     + ++  L +N
Sbjct: 394 GQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 117/232 (50%), Gaps = 8/232 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TY+++I+G CK G + +A ++F  +K +   P    YN LI  +C     ++   
Sbjct: 363 QPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFA 422

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G+  DV T+N ++  LC+N  ++ A +L D +   G+ PD      +V +  
Sbjct: 423 LKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PD------LVTFHI 475

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-K 191
           L++G C  G+ + A  L + +++ GL P  +TYNI +   C +  +  A ++   ME  +
Sbjct: 476 LMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKER 535

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
            +  N   +  L+  + +K +      LL  M ++ ++P      I+ + +V
Sbjct: 536 RLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMV 587



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 8/203 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +P T  YN +ID  CK G +D    L  +M+ E I P+V TYN LI G C   +  
Sbjct: 394 GQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE 453

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A+ LF ++ ++GL  D+VTF+++M+  C   +  +A  LL  M + G++P        +
Sbjct: 454 AAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRH------L 506

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            Y  ++ G CK G LK A  +   + +   L  NV +YN+ +       +++ A+ L  +
Sbjct: 507 TYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNE 566

Query: 188 MEVKGVAPNCVIFTTLMPSFIRK 210
           M  KG+ PN + +  +    + K
Sbjct: 567 MLEKGLVPNRITYEIVKEEMVDK 589



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 118/244 (48%), Gaps = 16/244 (6%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G +   + CKP       ++  L K+      + L+ +M    I PNV T+N +I+  C 
Sbjct: 183 GYKLSAMSCKP-------LMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCK 235

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK---NRKMDEATRLLDLMIQGGVRPD 120
               N+A  +  +M   G   +VV++N ++D  CK   N KM +A  +L  M++  V P 
Sbjct: 236 TGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSP- 294

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+  +  LIDG  K   L  + ++ + +    ++PNV+TYN  I+ LCN  ++++
Sbjct: 295 -----NLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINE 349

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  +   M   GV PN + + +L+  F +     + +++  S+  +   P   + ++++D
Sbjct: 350 AIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLID 409

Query: 241 LLVK 244
              K
Sbjct: 410 AYCK 413



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 9/198 (4%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           N   + EYL+ EM+ R +Q +V TFNV+++ LCK  KM++A  +++ M   G  P     
Sbjct: 202 NRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSP----- 256

Query: 125 INIVAYGCLIDGLCKI---GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
            N+V+Y  LIDG CK+   GK+  A  + + +    + PN+ T+NI I     D+ +  +
Sbjct: 257 -NVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGS 315

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             +F +M  + V PN + + +L+       + ++ I +   M    V P       +++ 
Sbjct: 316 LKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLING 375

Query: 242 LVKNEISLNSIPQFNRQK 259
             KN +   ++  F+  K
Sbjct: 376 FCKNGMMKEALDMFDSVK 393



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L K  +  +   L + + R  + PNV T+N+ I+ALC   +M+KA D+  DM+V G
Sbjct: 194 LMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIE---LLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +PN V + TL+  + +     K+ +   +L+ M +  V P  +  +I++D   K++
Sbjct: 254 YSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDD 310


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTYNT+++GLC+   +D A ELF +M +  + P+  T  +LIHG+C   +  +A 
Sbjct: 430 CVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKAL 489

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M  R L+ DVVT+N +MD  CK  +M++A  L   MI   + P      + +++ 
Sbjct: 490 SLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFP------SYISFS 543

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G C +G +  A  L   +   G+ P +VT N  I        + KA+D    M  +
Sbjct: 544 ILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISE 603

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           GV P+C+ + TL+ SF+++    +   L+ +M++R ++P
Sbjct: 604 GVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLP 642



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 121/257 (47%), Gaps = 29/257 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TYN +I+GLCKEG  ++AK +  +M    + PN  T+N ++   C   D  EAE 
Sbjct: 291 KPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAER 350

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           +F EM+ RG+  D+++F+ I+    +N ++  A    + M   G+ PD            
Sbjct: 351 VFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYC 410

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              C +++V Y  L++GLC+   L +A EL + +   G+ P+  
Sbjct: 411 RNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFY 470

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T    IH  C D  M KA  LF  M ++ + P+ V + TLM  F +  E  K  EL   M
Sbjct: 471 TLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDM 530

Query: 224 DKRNVMPYASILSIIVD 240
             R + P     SI+++
Sbjct: 531 ISREIFPSYISFSILIN 547



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 127/238 (53%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GV   P+TV Y  +I+G C+   V  A ++  +M +     +VVTYN+L++G C     +
Sbjct: 392 GVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLD 451

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A+ LF EM++RG+  D  T   ++   CK+  M +A  L + M    ++PD      +V
Sbjct: 452 DADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPD------VV 505

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG CK+G+++ A+EL   +    + P+ ++++I I+  C+   + +A  L+ +M
Sbjct: 506 TYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEM 565

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + KG+ P  V   T++  ++R    SK  + L +M    V P     + +++  VK E
Sbjct: 566 KEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEE 623



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT++DG CK G ++KAKEL+  M    I P+ ++++ LI+GFC     +EA  
Sbjct: 501 KPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFR 560

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM ++G++  +VT N I+    +   + +A   L+ MI  GV PD       + Y  
Sbjct: 561 LWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDC------ITYNT 614

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+   K      A  L  ++   GL+PN+VTYN  +       +M +A  +   M  KG
Sbjct: 615 LINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKG 674

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T+L+  ++ K+   +   +   M +R  +P
Sbjct: 675 INPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVP 712



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 29/243 (11%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTYNT+++  C+ G V +A  L   M  + + P + TYN+LI+G C       A+ +  E
Sbjct: 260 VTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDE 319

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--AFCEI--------- 125
           M+  GL  +  TFN ++ E C+   + EA R+ + M+Q GV PD  +F  I         
Sbjct: 320 MLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGE 379

Query: 126 ------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
                             + V Y  LI+G C+   +  A ++   +   G + +VVTYN 
Sbjct: 380 LGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNT 439

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            ++ LC  + +D A +LF +M  +GV P+    TTL+  + +    +K + L  +M  R+
Sbjct: 440 LLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRS 499

Query: 228 VMP 230
           + P
Sbjct: 500 LKP 502



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++  + K G+VD A +++          NV T N +++  C     +       EM +
Sbjct: 193 NALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEE 252

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           +G+ +D+VT+N +++  C+   + EA  L+D M   G++P  F       Y  LI+GLCK
Sbjct: 253 KGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLF------TYNALINGLCK 306

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G  + A+ +   +   GL PN  T+N  +   C  E + +A  +F +M  +GV P+ + 
Sbjct: 307 EGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLIS 366

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           F++++  F R  E  + +     M    ++P   I +I+++   +N+
Sbjct: 367 FSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRND 413



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 120/225 (53%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T N +++ LCK+G +D       +M+++ +  ++VTYN+L++ +C     +EA  L 
Sbjct: 223 NVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLV 282

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  +GL+  + T+N +++ LCK    + A R+LD M+  G+ P+A        +  ++
Sbjct: 283 DCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNA------ATFNPML 336

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C+   +  A  +   + + G++P++++++  +     + ++ +A   F  M+  G+ 
Sbjct: 337 VESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLV 396

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           P+ VI+T L+  + R ++ S  +++   M +R    +V+ Y ++L
Sbjct: 397 PDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLL 441



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 106/243 (43%), Gaps = 6/243 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V ++ +I    +   + +  E F  ++      ++   N+L+         + A  ++ +
Sbjct: 155 VVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYED 214

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
            +  G   +V T N++++ LCK+ K+D     L  M + GV  D      +V Y  L++ 
Sbjct: 215 FVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYAD------LVTYNTLVNA 268

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            C+ G +  A  L   +   GL P + TYN  I+ LC +   ++A  +  +M   G+ PN
Sbjct: 269 YCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPN 328

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
              F  ++    RK +  +   +   M +R V+P     S IV +  +N     ++  F 
Sbjct: 329 AATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFE 388

Query: 257 RQK 259
           + K
Sbjct: 389 KMK 391



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 61/107 (57%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNT+I+   KE   D+A  L   M++  + PN+VTYN+++ GF       EAE +
Sbjct: 607 PDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMV 666

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             +M+D+G+  D  T+  +++       M EA R+ D M+Q G  PD
Sbjct: 667 LHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 26/203 (12%)

Query: 48  NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD--------------------VV 87
           +PN     +LIH    +    EA+ L + ++ +   S                     VV
Sbjct: 96  SPNPSIIATLIHFLVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNVV 155

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
            F++++    + RK+ E +    L+     R   FC ++I A   L+  + K+G +  A 
Sbjct: 156 VFDLLIRTYVQARKLREGSEAFQLL-----RKRGFC-VSINACNALLGAIVKVGWVDLAW 209

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           ++ +   ++G + NV T NI ++ALC D ++D       +ME KGV  + V + TL+ ++
Sbjct: 210 KVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAY 269

Query: 208 IRKNETSKVIELLRSMDKRNVMP 230
            R+   S+   L+  M  + + P
Sbjct: 270 CRRGLVSEAFGLVDCMAGKGLKP 292


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 124/244 (50%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVTYN +I+ L +   +  A  +   M     +PN+VTYN +I G+C   D  +A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ RG  +++VT+N I+   C +     A R+LDLM  GG +PD +      +Y  L
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW------SYTEL 501

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CKI K+++A  L   +   GL PN VTY   I   C DE++D A  L   M+  G 
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN   +  L+    ++N  S   EL + M +  + P     + ++D L KN  +  ++ 
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 254 QFNR 257
            FN+
Sbjct: 622 MFNK 625



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 7/238 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  +Y  +I G CK   ++ A  LF +M D+ + PN VTY +LI G+C     + A 
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M   G + +V T+NV++  L K      A  L  +MI+ G+ P      N+V Y 
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFP------NVVTYT 604

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGLCK G    A E+   +   G +PN++TY+  I AL  + ++++A +LF ++E  
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 664

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
           G+ P+ + +  ++ ++I   +       L  M K    P      +++  L KNE  L
Sbjct: 665 GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYLL 721



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +I G C  G   KA  +   M     + N+VTYN++I G+C + +   A 
Sbjct: 421 CSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSAL 480

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M D G + D  ++  ++   CK  KM+ A  L + M+  G+ P      N V Y 
Sbjct: 481 RILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCP------NEVTYT 534

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK  KL  A  L + + R+G  PNV TYN+ IH L        A +L   M  +
Sbjct: 535 ALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEE 594

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           G+ PN V +T ++    +   TS  +E+   M ++  +P    Y+S++
Sbjct: 595 GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 33/261 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + YN +I+ LCK+G V  A+ +  ++ +  ++P+  TY S+I G C  +D + A  
Sbjct: 212 QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQ 271

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           +F +M   G + + VT++ +++ LC + +++EA  L+  MI  G+ P A           
Sbjct: 272 VFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC 331

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              CE N+  Y  LI GLC  G LK A  L   ++R G+ PN V
Sbjct: 332 DMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTV 391

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  I+ L  + ++  A  +   M   G +PN V +  ++  +    +  K + ++ +M
Sbjct: 392 TYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNM 451

Query: 224 DKR----NVMPYASILSIIVD 240
            +R    N++ Y +I+    D
Sbjct: 452 LQRGHSANLVTYNTIIKGYCD 472



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 127/304 (41%), Gaps = 76/304 (25%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDK-----------------------------------AK 36
           C+PNTVTY+T+I+GLC  G V++                                   A 
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
            LF+ MK++   PNV TY +LI G C +     A  LF  M   G+  + VT+N +++ L
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINIL 400

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            +NR++  A  +L+LM + G      C  NIV Y  +I G C +G  K A  +  ++ + 
Sbjct: 401 VENRRIKYAFVVLNLMGRNG------CSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQR 454

Query: 157 GLMPNVVTYNITIHALCN---------------------DE--------------QMDKA 181
           G   N+VTYN  I   C+                     DE              +M+ A
Sbjct: 455 GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESA 514

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             LF +M   G+ PN V +T L+  + +  +      LL  M +    P     ++++  
Sbjct: 515 FGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHG 574

Query: 242 LVKN 245
           L K 
Sbjct: 575 LTKQ 578



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EAEYLFI 75
            Y+ ++  L + G      + + +M  E + PN++ YN++I+  C   DGN  +AE +  
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC--KDGNVADAETIMK 239

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           ++ +  +  D  T+  ++   C+   +D A ++ + M + G      CE N V Y  LI+
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG------CEPNTVTYSTLIN 293

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLC  G++  A +L + +   G++P   T    I ALC+    + A  LF+DM+ KG  P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           N   +T L+            I L   M +  V P     + ++++LV+N 
Sbjct: 354 NVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENR 404



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 16/189 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN  TYN +I GL K+     A+EL   M +E I PNVVTY ++I G C     + A 
Sbjct: 561 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 620

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+++G   +++T++ ++  L +  K++EA  L   + + G+ PD       + Y 
Sbjct: 621 EMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE------ITYV 674

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+     GK+++A      + +AG  P + TY + I  L N+        L  D  + 
Sbjct: 675 KMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEY-------LLADQRLA 727

Query: 192 G---VAPNC 197
               V PNC
Sbjct: 728 ALPDVVPNC 736



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 30/216 (13%)

Query: 12  CKPNTVTYNTIIDGL--------------------CKEGF--VDKAKELFLQMKDENINP 49
           C+P   TY  +I GL                    C  G+   D+     +  K   ++P
Sbjct: 701 CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 760

Query: 50  --NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
             +V   N+L+     A    EA  L   M+ +GL  D   +N ++  L + R +D A  
Sbjct: 761 GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMG 820

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           +   M   G      CE+++  Y  LI  LC++ + K AR   +++      P+ V   +
Sbjct: 821 VFKHMSTQG------CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAV 874

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
            I  L  D   D   +    ME +   P+  I+T L
Sbjct: 875 LIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 97  CKNRK-MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           C +++ M      LD++ Q G+R      + + AY  L+  L ++G      +    +  
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLR------MGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 208

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G+ PN++ YN  I+ALC D  +  A  +   +    ++P+   +T+++    RK++   
Sbjct: 209 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 268

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLL 242
            +++   M K    P     S +++ L
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGL 295


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNTI+D LCK+G +  A++L + MK   + PN  TYN L++G+C      EA 
Sbjct: 239 CSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAA 298

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M    L  DV T+N++++ LC   +++EA +L D M    + PD      +V+Y 
Sbjct: 299 NVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPD------VVSYN 352

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G  +  K+  A +L + ++  G+ PN VT+NI +   C + +MD A +    ME  
Sbjct: 353 TLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEES 412

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G +P+CV + TL+  + +     +    +  M ++N+   +  L+ I+  L + +
Sbjct: 413 GFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREK 467



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VT+N ++   CKEG +D A     +M++   +P+ VTYN+LI+G+C A +  EA  
Sbjct: 380 KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFR 439

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM  + ++ D VT N I+  LC+ +K++EA +LL    + G   D       V+YG 
Sbjct: 440 TMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDE------VSYGT 493

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K G +  A +L   +    ++P+ VTYN  I  LC   + ++A     ++   G
Sbjct: 494 LIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESG 553

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + T++  + R+ +  K  +    M + +  P
Sbjct: 554 LLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKP 591



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 112/215 (52%), Gaps = 8/215 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V+Y T+I G  K+G VD+A +L+ +MK++ I P+ VTYN +I G C      +A     E
Sbjct: 489 VSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNE 548

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLID 135
           +++ GL  D  T+N I+   C+   +++A +  + M++   +PD F C I       L+ 
Sbjct: 549 LLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNI-------LLR 601

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLC  G L+ A +L  +    G   + VTYN  I +LC + ++D A +L  +ME K + P
Sbjct: 602 GLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGP 661

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +   +  ++ +        +  E +  M ++  +P
Sbjct: 662 DHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLP 696



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 9/235 (3%)

Query: 13  KPNTVTYNTIIDGLCK---EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           +PN +T NT+++ L +      V  ++E F       I PNV T+N +I+G+C  N   +
Sbjct: 167 RPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKD 226

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A      M       D VT+N I+D LCK  ++ +A  LL  M   G+ P      N   
Sbjct: 227 AVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLP------NRNT 280

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+ G CK+G LK A  + + +T+  L+P+V TYN+ I+ LCN+ ++++A  L  +ME
Sbjct: 281 YNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME 340

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + P+ V + TL+   +  ++ S+  +LL  M ++ V P A   +I+V    K
Sbjct: 341 NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCK 395



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 6/186 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN II GLC+ G  ++A     ++ +  + P+  TYN+++HG+C   D  +A   
Sbjct: 521 PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQF 580

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++   + DV T N+++  LC    +++A +L +  +  G        I+ V Y  L
Sbjct: 581 HNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGK------AIDTVTYNTL 634

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LCK G+L +A  L   +    L P+  TYN  I AL +  ++ +A +    M  KG 
Sbjct: 635 ITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGX 694

Query: 194 APNCVI 199
            P  V+
Sbjct: 695 LPXQVL 700



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 29/223 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYNTI+ G C+EG V+KA +   +M + +  P+V T N L+ G C      +A  L
Sbjct: 556 PDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKL 615

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F   + +G   D VT+N ++  LCK  ++D+A  LL  M +  + PD +       Y  +
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHY------TYNAI 669

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMP-----------------------NVVTYNITIH 170
           I  L   G+++ A E    +   G +P                       + V Y+  I 
Sbjct: 670 ITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIK 729

Query: 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
            LC + +   A  +F + + KG+  +   +  LM   I++ ++
Sbjct: 730 ELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRRKS 772



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 17/170 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T N ++ GLC EG ++KA +LF     +    + VTYN+LI   C     ++A  
Sbjct: 590 KPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFN 649

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN------ 126
           L  EM ++ L  D  T+N I+  L  + ++ EA   +  M++ G  P    +++      
Sbjct: 650 LLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVV 709

Query: 127 -----------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                       VAY   I  LC  GK K+A  +     + G+  +  TY
Sbjct: 710 TSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTY 759


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNTVTYNT+I  LCKE  ++ A +L   +  + + P+V T+N+LI G C + + + A 
Sbjct: 329 CSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAM 388

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM ++G + D  T+++++D LC  R++ EA  LL  M   G      C  N V Y 
Sbjct: 389 EMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSG------CARNAVVYN 442

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK  ++++A E+   +   G+  + VTYN  I  LC ++++++A  L   M ++
Sbjct: 443 TLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIME 502

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P+   + +L+  F R  +  K  +++++M      P
Sbjct: 503 GLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEP 541



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  TY+ +ID LC E  + +A  L  +M+      N V YN+LI G C +    +AE
Sbjct: 399 CKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAE 458

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M   G+    VT+N ++D LCKN++++EA++L+D MI  G++PD F       Y 
Sbjct: 459 EIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKF------TYN 512

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C++G ++ A ++ Q++   G  P++ TY   I  LC   ++D A  L   +++K
Sbjct: 513 SLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMK 572

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+      +  ++ +   +  T + + L R M +++  P A    I+
Sbjct: 573 GIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIV 619



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 130/238 (54%), Gaps = 6/238 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G  C    V+   +++G CKEG V++A    L++ +E  +P+ VT+NSL++GFC   + 
Sbjct: 220 LGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNV 279

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           N+A  +   M+++G   DV T+N ++  +CK  + ++A  +L  MI   +R    C  N 
Sbjct: 280 NDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMI---LRE---CSPNT 333

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI  LCK  +++ A +L++ L   GL+P+V T+N  I  LC  +  D A ++F +
Sbjct: 334 VTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEE 393

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           M+ KG  P+   ++ L+ S   +    + + LL+ M+       A + + ++D L K+
Sbjct: 394 MKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKS 451



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN++I G+CK G  +KA E+  QM     +PN VTYN+LI   C  N+   A  L
Sbjct: 296 PDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDL 355

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ +GL  DV TFN ++  LC ++  D A  + + M   G +PD F       Y  L
Sbjct: 356 ARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEF------TYSIL 409

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LC   +LK A  L + +  +G   N V YN  I  LC   +++ A ++F  ME+ GV
Sbjct: 410 IDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGV 469

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           + + V + TL+    +     +  +L+  M    + P    Y S+L+
Sbjct: 470 SRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLT 516



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N++++G C+ G V+ A ++   M ++  +P+V TYNSLI G C   +  +A  +
Sbjct: 261 PDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEI 320

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ R    + VT+N ++  LCK  +++ AT L  +++  G+ PD      +  +  L
Sbjct: 321 LQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPD------VCTFNTL 374

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC       A E+ + +   G  P+  TY+I I +LC + ++ +A  L  +ME  G 
Sbjct: 375 IQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGC 434

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           A N V++ TL+    +        E+   M+   V   +   + ++D L KN+
Sbjct: 435 ARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNK 487



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T+N +I  LCK   +  A  +  +M +  + P+ +T+ +L+ GF    D N A  +  +M
Sbjct: 160 TFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQM 219

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +  G     V+  V+++  CK  +++EA R +  + + G  PD       V +  L++G 
Sbjct: 220 LGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQ------VTFNSLVNGF 273

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C+IG + +A ++   +   G  P+V TYN  I  +C   + +KA ++   M ++  +PN 
Sbjct: 274 CRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNT 333

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V + TL+ +  ++NE     +L R +  + ++P
Sbjct: 334 VTYNTLISALCKENEIEAATDLARILVSKGLLP 366



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 118/294 (40%), Gaps = 64/294 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+T  YN  ++ L ++  +   + L  +M +E I  +V T+N LI   C A+    A  
Sbjct: 120 KPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAIL 179

Query: 73  LFIEMMDRGLQSDVVTFNVIM-----------------------------------DELC 97
           +  EM + GL+ D +TF  +M                                   +  C
Sbjct: 180 MLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFC 239

Query: 98  KNRKMDEATRLLDLMIQGGVRPD---------AFCEI--------------------NIV 128
           K  +++EA R +  + + G  PD          FC I                    ++ 
Sbjct: 240 KEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVY 299

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI G+CK+G+ + A E+ Q +      PN VTYN  I ALC + +++ A DL   +
Sbjct: 300 TYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARIL 359

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             KG+ P+   F TL+            +E+   M  +   P     SI++D L
Sbjct: 360 VSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSL 413



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 127/316 (40%), Gaps = 70/316 (22%)

Query: 2   ANGNREFGVVCK-PNTVTYN------TIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY 54
           +N   +F  +C  P++ T++      T++  L +    D    L  Q+K     PN  T+
Sbjct: 34  SNSTFKFPTLCTTPSSTTHHPLPPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTF 93

Query: 55  NSLIHGFC-----------------YANDGN----------------EAEYLFIEMMDRG 81
            +LI  F                  +  D N                  E L  +M++ G
Sbjct: 94  ATLIQSFTNFHEIENLLKILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEG 153

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE-------- 124
           +  DV TFNV++  LCK  ++  A  +L+ M   G++PD          F E        
Sbjct: 154 IVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGAL 213

Query: 125 ---INIVAYGC---------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
                ++ YGC         L++G CK G+++ A      ++  G  P+ VT+N  ++  
Sbjct: 214 KMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGF 273

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           C    ++ A D+   M  KG  P+   + +L+    +  E  K IE+L+ M  R   P  
Sbjct: 274 CRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNT 333

Query: 233 SILSIIVDLLVK-NEI 247
              + ++  L K NEI
Sbjct: 334 VTYNTLISALCKENEI 349



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 30/190 (15%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           ++VTYNT+IDGLCK   V++A +L  QM  E + P+  TYNSL+  FC   D  +A  + 
Sbjct: 472 SSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIV 531

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV--RPDAFCEI------- 125
             M   G + D+ T+  ++  LC+  ++D A++LL  +   G+   P A+  +       
Sbjct: 532 QTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMR 591

Query: 126 --------------------NIVAYGCLIDGLCKIG-KLKNARELSQSLTRAGLMPNVVT 164
                               + + +  +  GLC  G  ++ A + +  +   G++P   +
Sbjct: 592 KRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPS 651

Query: 165 YNITIHALCN 174
           +      LC+
Sbjct: 652 FGFLAEGLCS 661



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 11/132 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           C+P+  TY T+I GLC+ G VD A +L   +QMK   + P+   YN +I          E
Sbjct: 539 CEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHA--YNPVIQALFMRKRTKE 596

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
              LF EMM++    D +T  ++   LC     + EA      M++ G+ P+        
Sbjct: 597 GMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPE------FP 650

Query: 129 AYGCLIDGLCKI 140
           ++G L +GLC +
Sbjct: 651 SFGFLAEGLCSL 662


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TYN +I+GLC+ G +++   +  +M  +   P+ VTYN+L++G+C   + ++A  
Sbjct: 270 EPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALV 329

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+  GL  DVVT+  +++ +CK   ++ A    D M   G+RP      N V Y  
Sbjct: 330 LHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRP------NGVTYTS 383

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  + G +  A  +   + R+G  P +VTYN  ++  C   +M++A  L   ME KG
Sbjct: 384 LINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKG 443

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           ++P+ V ++T++  F R  E  +  ++   M ++ V P A   S ++  L
Sbjct: 444 LSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGL 493



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN +I G C  G ++     F +M+     PNVVTYN++I  +C     +EA  L 
Sbjct: 202 NVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLL 261

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M   GL+ +++T+N++++ LC+  +++E + +L  M + G  PD       V Y  L+
Sbjct: 262 RSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDG------VTYNTLV 315

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +G CK+G    A  L   + R GL P+VVTY   I+ +C    +++A + F  M V+G+ 
Sbjct: 316 NGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLR 375

Query: 195 PNCVIFTTLMPSFIRK---NETSKVI-ELLRSMDKRNVMPYASIL 235
           PN V +T+L+  F +K   +E  ++  E++RS     ++ Y ++L
Sbjct: 376 PNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALL 420



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 129/241 (53%), Gaps = 10/241 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY ++I+G  ++GF+D+A  ++ +M      P +VTYN+L++G C +    EA  
Sbjct: 375 RPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIG 434

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M  +GL  DVV+++ I+   C+ +++D A ++   M++ GV PDA      + Y  
Sbjct: 435 LLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDA------ITYSS 488

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+  +L  A +L Q +    L+P+  TY   I+  C +  +++A +L  +M  KG
Sbjct: 489 LIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKG 548

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVDLLVKNEIS 248
             P+ V +  L+    ++  T +   LL  +     +P    Y +++    D+  K+ ++
Sbjct: 549 FLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVA 608

Query: 249 L 249
           L
Sbjct: 609 L 609



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 9/203 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY+++I GLC++  +++A +LF +M ++++ P+  TY SLI+G+C   D NEA  L
Sbjct: 481 PDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNL 540

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-----DLMIQGGVRPDAFCE---- 124
             EM+ +G   D VT+NV+++ L K  +  EA RLL     D  I  G+  D   E    
Sbjct: 541 HDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSD 600

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           I   +   LI G C  G +  A ++ +S+ +    PN   YN+ IH  C D  + KAH L
Sbjct: 601 IEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKL 660

Query: 185 FLDMEVKGVAPNCVIFTTLMPSF 207
           + +M   G  P+ V    L+ + 
Sbjct: 661 YKEMVDFGFIPHTVTIIALVKAL 683



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 116/233 (49%), Gaps = 11/233 (4%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN-E 69
           +C  ++  ++ ++       F++KA  +    K     P V++YN+++            
Sbjct: 127 MCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIF 186

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           AE ++ EM+  G+  +V ++N+++   C    ++   R  + M +    P      N+V 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLP------NVVT 240

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I   CK+ ++  A +L +S+   GL PN++TYN+ I+ LC   ++++   +  +M+
Sbjct: 241 YNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMD 300

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASILSII 238
            KG AP+ V + TL+  + +     + +    E+LR+    +V+ Y S+++ +
Sbjct: 301 RKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTM 353



 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   YN II G C++G V KA +L+ +M D    P+ VT  +L+    Y+   +E   
Sbjct: 635 KPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKAL-YSEGMDEQLN 693

Query: 73  LFIEMMDRGLQ-SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
           L I  + R  + SD      ++    K   +D    LL  M + G  P      N
Sbjct: 694 LVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDGFLPSGAAPAN 748


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 128/253 (50%), Gaps = 29/253 (11%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            R F  +  PN  T+N +ID LCKEG + +A+ LF +MK+    P+VVT+NSLI G+   
Sbjct: 177 RRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKC 236

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP----- 119
            + +E E L  EM   G ++DVVT+N +++  CK  +M+ A      M + GV       
Sbjct: 237 GELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTF 296

Query: 120 ----DAFCE--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
               DAFC+                    +N   Y CLIDG CK G+L +A  L   + R
Sbjct: 297 STFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR 356

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G+  NVVTY + +  LC + ++ +A D+   ME  GV  N +++TTL+        + K
Sbjct: 357 QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEK 416

Query: 216 VIELLRSMDKRNV 228
            + LL  M  + +
Sbjct: 417 ALGLLSEMKNKGL 429



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 9/241 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VT++T +D  CKEG V +A +LF QM+   +  N  TY  LI G C A   ++A  L 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +G+  +VVT+ V++D LCK RK+ EA  +L +M + GVR       N + Y  LI
Sbjct: 352 DEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRA------NELLYTTLI 405

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G       + A  L   +   GL  ++  Y   I  LCN  ++D+A  L   M+  G+ 
Sbjct: 406 HGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLE 465

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL---LVKNEISLNS 251
           PN +I+TT+M +  +  +  + I +L+ +      P    L+  V L   +V   +SL+ 
Sbjct: 466 PNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDK 525

Query: 252 I 252
           +
Sbjct: 526 V 526



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT T N I+  L +    D++  L  ++ ++   PNV T+N +I   C   +  EA  L
Sbjct: 155 PNTRTCNHILLRLAR----DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSL 210

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M + G   DVVTFN ++D   K  ++DE  +L++ M + G      C+ ++V Y  L
Sbjct: 211 FSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG------CKADVVTYNAL 264

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CK G+++ A     ++ R G+M NVVT++  + A C +  + +A  LF  M V+G+
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           A N   +T L+    +       I LL  M ++ V       +++VD L K
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCK 375



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 16/208 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + N + Y T+I G       +KA  L  +MK++ +  ++  Y +LI G C  +  +EA+ 
Sbjct: 395 RANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC--------- 123
           L  +M + GL+ + + +  +MD   K+ K+ EA  +L  ++  G +P+  C         
Sbjct: 455 LLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFN 514

Query: 124 -------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
                   ++ V Y  L+DG  K G L +A  L   +  +GL  ++  Y   I   CN  
Sbjct: 515 EMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLN 574

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            M +A ++F +M   G+AP+  ++  L+
Sbjct: 575 MMPEAREVFSEMIGHGIAPDRAVYNCLI 602



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 26/199 (13%)

Query: 77  MMDRGLQSDVV----------------TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           + DRGL  D V                T N I+  L ++R    + RL+  + +    P+
Sbjct: 132 LADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDR----SGRLVRRLFEQLPAPN 187

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            F   NIV     ID LCK G+L  AR L   +   G +P+VVT+N  I       ++D+
Sbjct: 188 VF-TFNIV-----IDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDE 241

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              L  +M   G   + V +  L+  F +            +M +  VM      S  VD
Sbjct: 242 VEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVD 301

Query: 241 LLVKNEISLNSIPQFNRQK 259
              K  +   ++  F + +
Sbjct: 302 AFCKEGLVREAMKLFAQMR 320



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V Y  ++DG  K+G +  A  L  +M D  +  ++  Y   I GFC  N   EA  +F
Sbjct: 524 DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVF 583

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKM 102
            EM+  G+  D   +N ++ ++ + R++
Sbjct: 584 SEMIGHGIAPDRAVYNCLITQIPEIREL 611


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 118/216 (54%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   YN II+GLCK+  VD+A  LF +M  + INP+VVTYN LI G C     + +  
Sbjct: 249 EPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLE 308

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G   D++T+N ++  LCKN  +D+A  L+  +   G++P      N+  Y  
Sbjct: 309 LVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQP------NVCTYTT 362

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK G+L++A  + Q +   G    V TYN+ I+ LC     D+A  L   ME   
Sbjct: 363 LIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNA 422

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             P+ V + T++ +   K ET K  +LL +M  R +
Sbjct: 423 CIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGL 458



 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 112/191 (58%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T++ ++D LCK+    +A  L   M  + + PNVVTY +++ G+C  N  N+A  +
Sbjct: 180 PNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNI 239

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+  G++ +V  +N+I++ LCK +++DEA  L   M    + PD      +V Y  L
Sbjct: 240 FNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPD------VVTYNIL 293

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK+GK+  + EL   +   G   +++TYN  +HALC +  +D+A  L  +++ +G+
Sbjct: 294 IDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGI 353

Query: 194 APNCVIFTTLM 204
            PN   +TTL+
Sbjct: 354 QPNVCTYTTLI 364



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 9/234 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT   +++  C  G +     +  ++      PN +T+ +LI G C      EA  
Sbjct: 42  KPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALL 101

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               ++  G + D V++ ++M+ LCK   M E    + ++ +  V  D      +V Y  
Sbjct: 102 FHDHVVAHGFKLDQVSYAILMNGLCK---MGETRAAMQMLRKTWVNAD------VVMYST 152

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK   + +A  L   +   G+ PNV T++I + ALC D +  +A +L   M  KG
Sbjct: 153 IIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKG 212

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           V PN V +  +M  +   N+ +K + +   M +  V P     +II++ L K +
Sbjct: 213 VKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKK 266



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY T+IDGLCK+G ++ A  +F ++  E  +  V TYN +I+G C     +EA  
Sbjct: 354 QPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALA 413

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI----- 127
           L   M D     D V++  I+  L +  +  +  +LL  MI  G+      ++N+     
Sbjct: 414 LLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGLSKRLKKKVNMTTIAD 473

Query: 128 -----VAYGCLIDGL 137
                 AY  L DG+
Sbjct: 474 LNDKWAAYASLEDGM 488


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  +TYN++I G C+ G +D+A  L  +M D+   P+VVTY +L+  FC     ++A 
Sbjct: 242 CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAY 301

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M+   L  DVVTF  ++D LC   +M++A  LL+ + + G  P       I  Y 
Sbjct: 302 ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP------TIYTYN 355

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM--E 189
           C++DG CK  +++ A EL       G +PN VTYNI +   C   + D+A   +LD    
Sbjct: 356 CVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQ-YLDQLNS 414

Query: 190 VKGVAPNCV-IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             G  P  V ++  ++ +  R   T   ++    M +R  +P A+  + +V  L K
Sbjct: 415 EGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCK 470



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 131/297 (44%), Gaps = 63/297 (21%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VTYN+II G C+   VD+A     QM  E  +P+++TY +LI GFC + D     
Sbjct: 140 CAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGL 199

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRK------------------------------ 101
            L  E+  RG   D+VT++ ++D LCK  +                              
Sbjct: 200 ELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRA 259

Query: 102 --MDEATRLLDLMIQGGVRPD---------AFCEI--------------------NIVAY 130
             MDEA RLL  M+     PD         AFC++                    ++V +
Sbjct: 260 GDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTF 319

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L+DGLC  G++++A EL + +TR G  P + TYN  +   C   Q+ KA +L  D   
Sbjct: 320 TSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRS 379

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI--LSIIVDLLVKN 245
           +G  PN V +  L+    R   T + ++ L  ++        S+   +II+D L ++
Sbjct: 380 RGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRD 436



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T+ +N +I GLC+ G +  A  ++ QM D +  P+ +TY  L+HG   A    +A  +
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+      D  T  V++  LC   ++D+A  L++ M+  G+        N + Y  L
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGM------AANAITYSAL 115

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK  +L  A  L +++   G  P VVTYN  I   C   ++D+AH     M  +G 
Sbjct: 116 VDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGC 175

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ + +T L+  F +  +  + +ELL  + +R   P     S ++D L K
Sbjct: 176 HPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCK 226



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 6/208 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ VT+ +++DGLC EG ++ A EL  ++      P + TYN ++ G+C AN   +AE 
Sbjct: 313 SPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEE 372

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD-LMIQGGVRPDAFCEINIVAYG 131
           L  +   RG   + VT+N+++   C+  + D+A + LD L  +GG      C  ++  Y 
Sbjct: 373 LVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGP-----CPTSVAMYA 427

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++D LC+ G+  +A +  + + + G +P   T+   + ALC   Q  +AH+L  +M   
Sbjct: 428 IILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKY 487

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           G  P       ++ ++ R     K  EL
Sbjct: 488 GHTPGPGTCDAVVSAYCRAGMIQKADEL 515



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 8/181 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYN ++DG CK   V KA+EL    +     PN VTYN L+ G C A   ++A 
Sbjct: 347 CPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQAL 406

Query: 72  YLFIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
               ++   G    + V  + +I+D LC++ + D+A +  + MIQ G  P A        
Sbjct: 407 QYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAA------AT 460

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  ++  LCK  + + A EL + + + G  P   T +  + A C    + KA +L  ++ 
Sbjct: 461 FATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 520

Query: 190 V 190
           +
Sbjct: 521 L 521



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 44/100 (44%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C  +   Y  I+D LC++G  D A + + +M      P   T+ +++   C A+   
Sbjct: 416 GGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQ 475

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           +A  L  EM+  G      T + ++   C+   + +A  L
Sbjct: 476 QAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADEL 515



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLC+ G+L++A  + + +  A   P+ +TY   +H L    ++  A  +  +M    
Sbjct: 11  VIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSAR 69

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             P+    T ++ S    +      EL+  M  R +   A   S +VD L K E
Sbjct: 70  HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCE 123


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  +Y+  I+G CK   +D+A ELF +M    + PN VTYN+LI   C A    +A+ 
Sbjct: 177 KPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQV 236

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M   GL  D++ ++ ++D  CK   +DE   L   M +  V+PD      +V Y  
Sbjct: 237 LFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPD------LVVYTI 290

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G+C+  K+K+A+E+   L   GL P+V TY   +  LC +  + +A  LF  ME  G
Sbjct: 291 IINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDG 350

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             P    +  L+   ++ N+TS V++L+  M  R     A   + + D L  N+
Sbjct: 351 CMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKDFLPGND 404



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 6   REFGVV-CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +E G+V C P+ VT N+++ G C +G +DK +++F  M  + + P+V +Y+  I+G+C  
Sbjct: 134 KEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKV 193

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA  LF EM  RG+  + VT+N ++  LC+  +  +A  L   M   G+ PD    
Sbjct: 194 EKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPD---- 249

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             I+AY  L+DG CK G L     L Q + R  + P++V Y I I+ +C   ++  A ++
Sbjct: 250 --ILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEV 307

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              + V+G+ P+   +T L+    R+    + + L R M++   MP
Sbjct: 308 LSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMP 353



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N  T + +I+  C    VD    +F +       P+VV + +LI G C       A  
Sbjct: 72  KYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAG 131

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G   DVVT N +M   C   K+D+  ++  LM+  G++PD +      +Y  
Sbjct: 132 LLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVY------SYSI 185

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I+G CK+ K+  A EL   ++  G++PN VTYN  I ALC   +   A  LF  M   G
Sbjct: 186 FINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACG 245

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++P+ + ++TL+  F ++    +++ L + M +R V P   + +II++ + ++ 
Sbjct: 246 LSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSR 299



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 104/215 (48%), Gaps = 6/215 (2%)

Query: 30  GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89
           G +D A   F +M D N  P ++ +N L+              LF EM  RG++ +V T 
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149
           +++++  C    +D    +    ++ G +PD      +V +  LIDG+C+IGK + A  L
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTLKRGFKPD------VVIFTTLIDGVCRIGKTELAAGL 132

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            + +   G +P+VVT N  +   C+  ++DK   +F  M  KG+ P+   ++  +  + +
Sbjct: 133 LKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCK 192

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +  + +EL   M  R V+P A   + ++  L +
Sbjct: 193 VEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQ 227


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 128/252 (50%), Gaps = 29/252 (11%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R F  +  PN  T+N +ID LCKEG + +A+ LF +MK+    P+VVT+NSLI G+    
Sbjct: 178 RLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCG 237

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------ 119
           + +E E L  EM   G ++DVVT+N +++  CK  +M+ A      M + GV        
Sbjct: 238 ELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFS 297

Query: 120 ---DAFCE--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
              DAFC+                    +N   Y CLIDG CK G+L +A  L   + R 
Sbjct: 298 TFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQ 357

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G+  NVVTY + +  LC + ++ +A D+   ME  GV  N +++TTL+        + K 
Sbjct: 358 GVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKA 417

Query: 217 IELLRSMDKRNV 228
           + LL  M  + +
Sbjct: 418 LGLLSEMKNKGL 429



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 124/245 (50%), Gaps = 6/245 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VT++T +D  CKEG V +A +LF QM+   +  N  TY  LI G C A   ++A  L 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +G+  +VVT+ V++D LCK RK+ EA  +L +M + GVR       N + Y  LI
Sbjct: 352 DEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRA------NELLYTTLI 405

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G       + A  L   +   GL  ++  Y   I  LCN  ++D+A  L   M+  G+ 
Sbjct: 406 HGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLE 465

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
           PN +I+TT+M +  +  +  + I +L+ +      P       ++D L K      +I  
Sbjct: 466 PNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISH 525

Query: 255 FNRQK 259
           FN+ +
Sbjct: 526 FNKMR 530



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 8/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + Y T++D   K G V +A  +  ++ D    PNV+TY +LI G C A   +EA  
Sbjct: 465 EPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAIS 524

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M D GL  +V  +  ++D LCKN  ++EA +L + M+  G+  D       V Y  
Sbjct: 525 HFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDK------VVYTA 578

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG  K G L +A  L   +  +GL  ++  Y   I   CN   M +A ++F +M   G
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +AP+  ++  L+  + +     + I L   M++  V+P
Sbjct: 639 IAPDRAVYNCLISKYQKLGNLEEAISLQDEMER--VLP 674



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 6/209 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTY  ++DGLCKE  V +A+++   M+   +  N + Y +LIHG     +  +A  L 
Sbjct: 362 NVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLL 421

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM ++GL+ D+  +  ++  LC   K+DEA  LL  M + G+ P      N + Y  ++
Sbjct: 422 SEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP------NYIIYTTMM 475

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D   K GK+  A  + Q +  +G  PNV+TY   I  LC    +D+A   F  M   G+ 
Sbjct: 476 DACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLD 535

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           PN   +T L+    +    ++ ++L   M
Sbjct: 536 PNVQAYTALVDGLCKNGCLNEAVQLFNEM 564



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT T N I+  L +    D++  L  ++ ++   PNV T+N +I   C   +  EA  L
Sbjct: 155 PNTRTCNHILLRLAR----DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSL 210

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M + G   DVVTFN ++D   K  ++DE  +L++ M + G      C+ ++V Y  L
Sbjct: 211 FSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG------CKADVVTYNAL 264

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CK G+++ A     ++ R G+M NVVT++  + A C +  + +A  LF  M V+G+
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           A N   +T L+    +       I LL  M ++ V       +++VD L K
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCK 375



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 8/185 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TY  +IDGLCK G +D+A   F +M+D  ++PNV  Y +L+ G C     NEA  
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +G+  D V +  ++D   K   + +A  L   MI  G++ D FC      Y C
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFC------YTC 613

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I G C +  +  ARE+   +   G+ P+   YN  I        +++A  + L  E++ 
Sbjct: 614 FISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEA--ISLQDEMER 671

Query: 193 VAPNC 197
           V P+C
Sbjct: 672 VLPSC 676



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + N + Y T+I G       +KA  L  +MK++ +  ++  Y +LI G C  +  +EA+ 
Sbjct: 395 RANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M + GL+ + + +  +MD   K+ K+ EA  +L  ++  G +P      N++ Y  
Sbjct: 455 LLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQP------NVITYCA 508

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK G +  A      +   GL PNV  Y   +  LC +  +++A  LF +M  KG
Sbjct: 509 LIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           ++ + V++T L+  ++++        L   M
Sbjct: 569 MSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 26/199 (13%)

Query: 77  MMDRGLQSDVV----------------TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           + DRGL  D V                T N I+  L ++R    + RL+  + +    P+
Sbjct: 132 LADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDR----SGRLVRRLFEQLPAPN 187

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            F   NIV     ID LCK G+L  AR L   +   G +P+VVT+N  I       ++D+
Sbjct: 188 VF-TFNIV-----IDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDE 241

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              L  +M   G   + V +  L+  F +            +M +  VM      S  VD
Sbjct: 242 VEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVD 301

Query: 241 LLVKNEISLNSIPQFNRQK 259
              K  +   ++  F + +
Sbjct: 302 AFCKEGLVREAMKLFAQMR 320


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 124/244 (50%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVTYN +I+ L +   +  A  +   M     +PN+VTYN +I G+C   D  +A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ RG  +++VT+N I+   C +     A R+LDLM  GG +PD +      +Y  L
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW------SYTEL 501

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CKI K+++A  L   +   GL PN VTY   I   C DE++D A  L   M+  G 
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN   +  L+    ++N  S   EL + M +  + P     + ++D L KN  +  ++ 
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 254 QFNR 257
            FN+
Sbjct: 622 MFNK 625



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 7/238 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  +Y  +I G CK   ++ A  LF +M D+ + PN VTY +LI G+C     + A 
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M   G + +V T+NV++  L K      A  L  +MI+ G+ P      N+V Y 
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFP------NVVTYT 604

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGLCK G    A E+   +   G +PN++TY+  I AL  + ++++A +LF ++E  
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 664

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
           G+ P+ + +  ++ ++I   +       L  M K    P      +++  L KNE  L
Sbjct: 665 GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL-KNEYLL 721



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +I G C  G   KA  +   M     + N+VTYN++I G+C + +   A 
Sbjct: 421 CSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSAL 480

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M D G + D  ++  ++   CK  KM+ A  L + M+  G+ P      N V Y 
Sbjct: 481 RILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCP------NEVTYT 534

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK  KL  A  L + + R+G  PNV TYN+ IH L        A +L   M  +
Sbjct: 535 ALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEE 594

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           G+ PN V +T ++    +   TS  +E+   M ++  +P    Y+S++  +
Sbjct: 595 GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 33/261 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + YN +I+ LCK+G V  A+ +  ++ +  ++P+  TY S+I G C  +D + A  
Sbjct: 212 QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQ 271

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           +F +M   G + + VT++ +++ LC + +++EA  L+  MI  G+ P A           
Sbjct: 272 VFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC 331

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              CE N+  Y  LI GLC  G LK A  L   ++R G+ PN V
Sbjct: 332 DMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTV 391

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  I+ L  + ++  A  +   M   G +PN V +  ++  +    +  K + ++ +M
Sbjct: 392 TYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNM 451

Query: 224 DKR----NVMPYASILSIIVD 240
            +R    N++ Y +I+    D
Sbjct: 452 LQRGHSANLVTYNTIIKGYCD 472



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 127/304 (41%), Gaps = 76/304 (25%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDK-----------------------------------AK 36
           C+PNTVTY+T+I+GLC  G V++                                   A 
Sbjct: 281 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 340

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
            LF+ MK++   PNV TY +LI G C +     A  LF  M   G+  + VT+N +++ L
Sbjct: 341 RLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL 400

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            +NR++  A  +L+LM + G      C  NIV Y  +I G C +G  K A  +  ++ + 
Sbjct: 401 VENRRIKYAFVVLNLMGRNG------CSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQR 454

Query: 157 GLMPNVVTYNITIHALCN---------------------DE--------------QMDKA 181
           G   N+VTYN  I   C+                     DE              +M+ A
Sbjct: 455 GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESA 514

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             LF +M   G+ PN V +T L+  + +  +      LL  M +    P     ++++  
Sbjct: 515 FGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHG 574

Query: 242 LVKN 245
           L K 
Sbjct: 575 LTKQ 578



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EAEYLFI 75
            Y+ ++  L + G      + + +M  E + PN++ YN++I+  C   DGN  +AE +  
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC--KDGNVADAETIMK 239

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           ++ +  +  D  T+  ++   C+   +D A ++ + M + G      CE N V Y  LI+
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG------CEPNTVTYSTLIN 293

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLC  G++  A +L + +   G++P   T    I ALC+    + A  LF+DM+ KG  P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           N   +T L+            I L   M +  V P     + ++++LV+N 
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENR 404



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 16/189 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN  TYN +I GL K+     A+EL   M +E I PNVVTY ++I G C     + A 
Sbjct: 561 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 620

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+++G   +++T++ ++  L +  K++EA  L   + + G+ PD       + Y 
Sbjct: 621 EMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE------ITYV 674

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+     GK+++A      + +AG  P + TY + I  L N+        L  D  + 
Sbjct: 675 KMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEY-------LLADQRLA 727

Query: 192 G---VAPNC 197
               V PNC
Sbjct: 728 ALPDVVPNC 736



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 30/216 (13%)

Query: 12  CKPNTVTYNTIIDGL--------------------CKEGF--VDKAKELFLQMKDENINP 49
           C+P   TY  +I GL                    C  G+   D+     +  K   ++P
Sbjct: 701 CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 760

Query: 50  --NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
             +V   N+L+     A    EA  L   M+ +GL  D   +N ++  L + R +D A  
Sbjct: 761 GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMG 820

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           +   M   G      CE+++  Y  LI  LC++ + K AR   +++      P+ V   +
Sbjct: 821 VFKHMSTQG------CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAV 874

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
            I  L  D   D   +    ME +   P+  I+T L
Sbjct: 875 LIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 910



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 97  CKNRK-MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           C +++ M      LD++ Q G+R      + + AY  L+  L ++G      +    +  
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLR------MGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 208

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G+ PN++ YN  I+ALC D  +  A  +   +    ++P+   +T+++    RK++   
Sbjct: 209 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 268

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLL 242
            +++   M K    P     S +++ L
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGL 295


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 129/269 (47%), Gaps = 43/269 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY T+I GLC    VDKA EL  +M +  I PNVV Y+ L+ G+C A        
Sbjct: 145 RPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSK 204

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  RG++ DVV +  ++D LC+  K+ +AT+++D M++ G+ P      N+V Y  
Sbjct: 205 VFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEP------NVVTYNV 258

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLM--------------------------------- 159
           LI+ +CK G +K A  L  ++   G+                                  
Sbjct: 259 LINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGE 318

Query: 160 ----PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
               PNVVT+N  IH LC   +M +A  +   M   G A N V F  L+   +R ++  K
Sbjct: 319 TMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKK 378

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +EL+  M    + P +   SI+++   K
Sbjct: 379 AMELMDEMASSGLEPDSFTYSILINGFCK 407



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 139/277 (50%), Gaps = 31/277 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT+N++I GLCK G + +A ++   M +     N+VT+N LI G    +   +A  
Sbjct: 322 EPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAME 381

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
           L  EM   GL+ D  T++++++  CK  ++D A  LL  M + G+ P+         A C
Sbjct: 382 LMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALC 441

Query: 124 E-------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           E                   +++VAY  +I G C++   K+A E  + +   GL+P+ VT
Sbjct: 442 EQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVT 501

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y++ I+   N   +  A  +   M   G  P+  +F +L+  +  K +T KV+EL+R M 
Sbjct: 502 YSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMT 561

Query: 225 KRNVMPYASILSIIVDLLVKN---EISLNSIPQFNRQ 258
            +++   + I+S I   LV N   +  L S+P F+ +
Sbjct: 562 AKDIALDSKIISTIYTCLVANNEGKALLQSVPGFDTE 598



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 117/218 (53%), Gaps = 4/218 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y  +ID LC+EG V KA ++  +M +  + PNVVTYN LI+  C      EA  
Sbjct: 215 EPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMS 274

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+++G+  D VT+N ++  L    +MDEA  LL+ MI G    +   E N+V +  
Sbjct: 275 LRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHG----ETMVEPNVVTFNS 330

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLCK G+++ A ++   +   G   N+VT+N+ I  L    ++ KA +L  +M   G
Sbjct: 331 VIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSG 390

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   ++ L+  F +  +  +   LL  M +  + P
Sbjct: 391 LEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEP 428



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 115/211 (54%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  V+Y T++  LC E    +A  L   M+   + P+VVTY +LI G C A D ++A  
Sbjct: 110 RPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVE 169

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM + G++ +VV ++ ++   CK  + +  +++ + M   G+ PD      +V Y  
Sbjct: 170 LLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPD------VVMYTG 223

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LC+ GK+K A ++   +   GL PNVVTYN+ I+++C +  + +A  L  +M  KG
Sbjct: 224 LIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKG 283

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           VA + V + TL+       E  + + LL  M
Sbjct: 284 VALDAVTYNTLITGLSGVLEMDEAMGLLEEM 314



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 6/214 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V+YNT++  LC++G    A    L++      P  V+Y +L+   C      +A  L 
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   G++ DVVT+  ++  LC    +D+A  LL  M + G+ P      N+V Y CL+
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEP------NVVVYSCLL 190

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G CK G+ +   ++ + ++  G+ P+VV Y   I +LC + ++ KA  +   M  +G+ 
Sbjct: 191 QGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLE 250

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           PN V +  L+ S  ++    + + L  +M ++ V
Sbjct: 251 PNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGV 284



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 97/195 (49%), Gaps = 6/195 (3%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           + V+YN+++   C      +A    + +M    +   V++  +M  LC  R+  +A  LL
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
             M   GVRPD      +V YG LI GLC    +  A EL + +  +G+ PNVV Y+  +
Sbjct: 137 RDMQASGVRPD------VVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLL 190

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              C   + +    +F +M  +G+ P+ V++T L+ S  R+ +  K  +++  M +R + 
Sbjct: 191 QGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLE 250

Query: 230 PYASILSIIVDLLVK 244
           P     +++++ + K
Sbjct: 251 PNVVTYNVLINSMCK 265


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 6/240 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F ++  P+ VT+NTIID  C+   VD+  +L  ++    +  N  TYN+LIHGFC  ++ 
Sbjct: 419 FDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNL 478

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           N A+ LF EM+  G+  D +T N+++   C+N K++EA  L +++    +      +++ 
Sbjct: 479 NAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKI------DLDT 532

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           VAY  +I G+CK  K+  A +L  SL   G+ P+V TYN+ I   C    +  A+ LF  
Sbjct: 533 VAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHK 592

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M+  G  P+   + TL+   ++  E  K IEL+  M        A  + ++ DL+    +
Sbjct: 593 MKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRL 652



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 25/233 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V Y+ IID LCK+G    A+ LF +M ++ I PNV TYN +I GFC     ++A+ 
Sbjct: 288 KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 347

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
           L  +M++R +  DV+TFN ++    K  K+ EA +L D M+   + PD          FC
Sbjct: 348 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 407

Query: 124 EIN----------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           + N                +V +  +ID  C+  ++    +L + ++R GL+ N  TYN 
Sbjct: 408 KHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 467

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            IH  C  + ++ A DLF +M   GV P+ +    L+  F    +  + +EL 
Sbjct: 468 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELF 520



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+  G     + VTY TI++G+CK G    A  L  +M++ +I P+VV Y+++I   C  
Sbjct: 245 NKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKD 304

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++A+YLF EM+++G+  +V T+N ++D  C   +  +A RLL  MI+  + PD    
Sbjct: 305 GHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD---- 360

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ +  LI    K GKL  A +L   +    + P+ VTYN  I+  C   + D A  +
Sbjct: 361 --VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHM 418

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           F  M     +P+ V F T++  + R     + ++LLR + +R ++   +  + ++
Sbjct: 419 FDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI 469



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 16/228 (7%)

Query: 13  KPNTVTYNTIIDGLCKE----------GFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           +P+ VT+NT++ GLC E          G++ +   LF QM +  + P V+T+N+LI+G C
Sbjct: 173 QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLC 232

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 EA  L  +M+ +GL  DVVT+  I++ +CK      A  LL  M +  ++PD  
Sbjct: 233 LEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPD-- 290

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
               +V Y  +ID LCK G   +A+ L   +   G+ PNV TYN  I   C+  +   A 
Sbjct: 291 ----VVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQ 346

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            L  DM  + + P+ + F  L+ + +++ +  +  +L   M  R + P
Sbjct: 347 RLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFP 394



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +T+NT+I+GLC EG V +A  L  +M  + ++ +VVTY ++++G C   D   A  L
Sbjct: 219 PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 278

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M +  ++ DVV ++ I+D LCK+    +A  L   M++ G+ P      N+  Y C+
Sbjct: 279 LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP------NVFTYNCM 332

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  G+  +A+ L + +    + P+V+T+N  I A   + ++ +A  L  +M  + +
Sbjct: 333 IDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCI 392

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
            P+ V + +++  F + N       +   M   +V+ + +I+ +
Sbjct: 393 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDV 436



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 16/240 (6%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA---- 70
           N  ++N +I   C    +  +   F ++      P+VVT+N+L+HG C  +  +EA    
Sbjct: 140 NIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALF 199

Query: 71  ------EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                   LF +M++ GL   V+TFN +++ LC   ++ EA  L++ M+  G+       
Sbjct: 200 GYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLH------ 253

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           I++V YG +++G+CK+G  K+A  L   +    + P+VV Y+  I  LC D     A  L
Sbjct: 254 IDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYL 313

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +M  KG+APN   +  ++  F      S    LLR M +R + P     + ++   VK
Sbjct: 314 FSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVK 373



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 31/213 (14%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D A  L+ +M+   I  N+ ++N LI  FC  +  + +   F ++   G Q DVVTFN +
Sbjct: 123 DVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTL 182

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +  LC   ++ EA  L   M++ G   D   EI                           
Sbjct: 183 LHGLCLEDRISEALALFGYMVETGSLFDQMVEI--------------------------- 215

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
               GL P V+T+N  I+ LC + ++ +A  L   M  KG+  + V + T++    +  +
Sbjct: 216 ----GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 271

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           T   + LL  M++ ++ P   I S I+D L K+
Sbjct: 272 TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKD 304


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 6/240 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F ++  P+ VT+NTIID  C+   VD+  +L  ++    +  N  TYN+LIHGFC  ++ 
Sbjct: 424 FDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNL 483

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           N A+ LF EM+  G+  D +T N+++   C+N K++EA  L +++    +      +++ 
Sbjct: 484 NAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKI------DLDT 537

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           VAY  +I G+CK  K+  A +L  SL   G+ P+V TYN+ I   C    +  A+ LF  
Sbjct: 538 VAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHK 597

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M+  G  P+   + TL+   ++  E  K IEL+  M        A  + ++ DL+    +
Sbjct: 598 MKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRL 657



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 25/233 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V Y+ IID LCK+G    A+ LF +M ++ I PNV TYN +I GFC     ++A+ 
Sbjct: 293 KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 352

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
           L  +M++R +  DV+TFN ++    K  K+ EA +L D M+   + PD          FC
Sbjct: 353 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 412

Query: 124 EIN----------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           + N                +V +  +ID  C+  ++    +L + ++R GL+ N  TYN 
Sbjct: 413 KHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            IH  C  + ++ A DLF +M   GV P+ +    L+  F    +  + +EL 
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELF 525



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+  G     + VTY TI++G+CK G    A  L  +M++ +I P+VV Y+++I   C  
Sbjct: 250 NKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKD 309

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++A+YLF EM+++G+  +V T+N ++D  C   +  +A RLL  MI+  + PD    
Sbjct: 310 GHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD---- 365

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ +  LI    K GKL  A +L   +    + P+ VTYN  I+  C   + D A  +
Sbjct: 366 --VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHM 423

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           F  M     +P+ V F T++  + R     + ++LLR + +R ++   +  + ++
Sbjct: 424 FDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI 474



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +T+NT+I+GLC EG V +A  L  +M  + ++ +VVTY ++++G C   D   A  L
Sbjct: 224 PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 283

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M +  ++ DVV ++ I+D LCK+    +A  L   M++ G+ P      N+  Y C+
Sbjct: 284 LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP------NVFTYNCM 337

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  G+  +A+ L + +    + P+V+T+N  I A   + ++ +A  L  +M  + +
Sbjct: 338 IDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCI 397

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
            P+ V + +++  F + N       +   M   +V+ + +I+ +
Sbjct: 398 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDV 441



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 23/234 (9%)

Query: 13  KPNTVTYNTIIDGLCKE----------------GFVDKAKELFLQMKDENINPNVVTYNS 56
           +P+ VT+NT++ GLC E                GF++ A  LF QM +  + P V+T+N+
Sbjct: 173 QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE-AVALFDQMVEIGLTPVVITFNT 231

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           LI+G C      EA  L  +M+ +GL  DVVT+  I++ +CK      A  LL  M +  
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           ++PD      +V Y  +ID LCK G   +A+ L   +   G+ PNV TYN  I   C+  
Sbjct: 292 IKPD------VVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFG 345

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +   A  L  DM  + + P+ + F  L+ + +++ +  +  +L   M  R + P
Sbjct: 346 RWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFP 399



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 118/245 (48%), Gaps = 21/245 (8%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA---- 70
           N  ++N +I   C    +  +   F ++      P+VVT+N+L+HG C  +  +EA    
Sbjct: 140 NIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALF 199

Query: 71  -----------EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
                        LF +M++ GL   V+TFN +++ LC   ++ EA  L++ M+  G+  
Sbjct: 200 GYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLH- 258

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                I++V YG +++G+CK+G  K+A  L   +    + P+VV Y+  I  LC D    
Sbjct: 259 -----IDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 313

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            A  LF +M  KG+APN   +  ++  F      S    LLR M +R + P     + ++
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373

Query: 240 DLLVK 244
              VK
Sbjct: 374 SASVK 378



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 26/213 (12%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D A  L+ +M+   I  N+ ++N LI  FC  +  + +   F ++   G Q DVVTFN +
Sbjct: 123 DVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTL 182

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +  LC   ++ EA  L   M++ G     F E                     A  L   
Sbjct: 183 LHGLCLEDRISEALALFGYMVETG-----FLE---------------------AVALFDQ 216

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   GL P V+T+N  I+ LC + ++ +A  L   M  KG+  + V + T++    +  +
Sbjct: 217 MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 276

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           T   + LL  M++ ++ P   I S I+D L K+
Sbjct: 277 TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKD 309


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 6/240 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F ++  P+ VT+NTIID  C+   VD+  +L  ++    +  N  TYN+LIHGFC  ++ 
Sbjct: 208 FDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNL 267

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           N A+ LF EM+  G+  D +T N+++   C+N K++EA  L +++    +      +++ 
Sbjct: 268 NAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKI------DLDT 321

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           VAY  +I G+CK  K+  A +L  SL   G+ P+V TYN+ I   C    +  A+ LF  
Sbjct: 322 VAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHK 381

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M+  G  P+   + TL+   ++  E  K IEL+  M        A  + ++ DL+    +
Sbjct: 382 MKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLITDGRL 441



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 25/234 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V Y+ IID LCK+G    A+ LF +M ++ I PNV TYN +I GFC     ++A+ 
Sbjct: 77  KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 136

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
           L  +M++R +  DV+TFN ++    K  K+ EA +L D M+   + PD          FC
Sbjct: 137 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 196

Query: 124 EIN----------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           + N                +V +  +ID  C+  ++    +L + ++R GL+ N  TYN 
Sbjct: 197 KHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 256

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
            IH  C  + ++ A DLF +M   GV P+ +    L+  F    +  + +EL  
Sbjct: 257 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE 310



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+  G     + VTY TI++G+CK G    A  L  +M++ +I P+VV Y+++I   C  
Sbjct: 34  NKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKD 93

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++A+YLF EM+++G+  +V T+N ++D  C   +  +A RLL  MI+  + PD    
Sbjct: 94  GHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD---- 149

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ +  LI    K GKL  A +L   +    + P+ VTYN  I+  C   + D A  +
Sbjct: 150 --VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHM 207

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           F  M     +P+ V F T++  + R     + ++LLR + +R ++   +  + ++
Sbjct: 208 FDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI 258



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +T+NT+I+GLC EG V +A  L  +M  + ++ +VVTY ++++G C   D   A  L
Sbjct: 8   PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M +  ++ DVV ++ I+D LCK+    +A  L   M++ G+ P      N+  Y C+
Sbjct: 68  LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP------NVFTYNCM 121

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  G+  +A+ L + +    + P+V+T+N  I A   + ++ +A  L  +M  + +
Sbjct: 122 IDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCI 181

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
            P+ V + +++  F + N       +   M   +V+ + +I+ +
Sbjct: 182 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDV 225



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 6/189 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M +  + P V+T+N+LI+G C      EA  L  +M+ +GL  DVVT+  I++ +CK   
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
              A  LL  M +  ++PD      +V Y  +ID LCK G   +A+ L   +   G+ PN
Sbjct: 61  TKSALNLLSKMEETHIKPD------VVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V TYN  I   C+  +   A  L  DM  + + P+ + F  L+ + +++ +  +  +L  
Sbjct: 115 VFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCD 174

Query: 222 SMDKRNVMP 230
            M  R + P
Sbjct: 175 EMLHRCIFP 183



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M++ GL   V+TFN +++ LC   ++ EA  L++ M+  G+       I++V YG +++G
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLH------IDVVTYGTIVNG 54

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           +CK+G  K+A  L   +    + P+VV Y+  I  LC D     A  LF +M  KG+APN
Sbjct: 55  MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 114

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              +  ++  F      S    LLR M +R + P     + ++   VK
Sbjct: 115 VFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVK 162



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 49/93 (52%)

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   GL P V+T+N  I+ LC + ++ +A  L   M  KG+  + V + T++    +  +
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           T   + LL  M++ ++ P   I S I+D L K+
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKD 93


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 126/260 (48%), Gaps = 43/260 (16%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G  C  NTVTYN +I GLC+ G V++A      M+D  + P+  TY +LI+G C + 
Sbjct: 144 RERG--CGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 201

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             NEA+ L  EM    L+ +VV +  ++D   +    DEA +++  M+  GV+P      
Sbjct: 202 RSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQP------ 255

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTR------------------------------ 155
           N + Y  L+ GLCK+G++  A  L + + R                              
Sbjct: 256 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLL 315

Query: 156 -----AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                AG+ PNV TY+I IH LC   + +KA DL  +M  KG+ PN  ++  L+  + R+
Sbjct: 316 SEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCRE 375

Query: 211 NETSKVIELLRSMDKRNVMP 230
              S   E+   M K NV+P
Sbjct: 376 GNVSLACEIFDKMTKVNVLP 395



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 29/256 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TY+ ++ GLCK G +D+A  L  QM  ++  P+ +TYN +I G    ++  +A  
Sbjct: 254 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFR 313

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L  EM + G+  +V T+++++  LC++ + ++A+ LL+ M   G++P+AF          
Sbjct: 314 LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 373

Query: 123 --------CEI-----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                   CEI           ++  Y  LI GL K+G+++ + +    +   GL+PN  
Sbjct: 374 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 433

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY+  IH    +  ++ A  L   M   G+ PN VI+  L+ S+ + ++  KV    +SM
Sbjct: 434 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 493

Query: 224 DKRNVMPYASILSIIV 239
             + VM    I  I++
Sbjct: 494 LDQGVMLDNRIYGILI 509



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y  +IDG  +EG  D+A ++  +M    + PN +TY++L+ G C     + A  
Sbjct: 219 KPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASL 278

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+    + D +T+N+I++   ++    +A RLL  M   G+ P      N+  Y  
Sbjct: 279 LLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISP------NVYTYSI 332

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLC+ G+ + A +L + +T  GL PN   Y   I   C +  +  A ++F  M    
Sbjct: 333 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 392

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P+   + +L+    +     +  +    M +R ++P     S ++   +KN
Sbjct: 393 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 445



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY+ +I G  K G ++ A++L  +M D  + PN V Y  L+  +  ++D  +    
Sbjct: 430 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSST 489

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+D+G+  D   + +++  L  +  M+ A R+L  + + G  PD      +  Y  L
Sbjct: 490 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPD------VHVYSSL 543

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK    + A  +   +++ G+ PN+V YN  I  LC    +  A ++F  +  KG+
Sbjct: 544 ISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGL 603

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PNCV +T+L+    +  + S    L   M    + P A + S++ 
Sbjct: 604 VPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLT 649



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   Y  +I G C+EG V  A E+F +M   N+ P++  YNSLI G        E+  
Sbjct: 359 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 418

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M +RGL  +  T++ ++    KN  ++ A +L+  M+  G++P      N V Y  
Sbjct: 419 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP------NDVIYID 472

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++   K   ++      +S+   G+M +   Y I IH L +   M+ A  +  ++E  G
Sbjct: 473 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNG 532

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             P+  ++++L+    +  +  K   +L  M K+ V P     + ++D L K+
Sbjct: 533 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 585



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 30/228 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y+++I GLCK    +KA  +  +M  + ++PN+V YN+LI G C + D + A  +
Sbjct: 535 PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNV 594

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
           F  ++ +GL  + VT+  ++D  CK   +  A  L + M+  G+ PDAF   +++  GC 
Sbjct: 595 FNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFV-YSVLTTGCS 653

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       L+DG CK GK++   +L   +   GL+PN +T
Sbjct: 654 SAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALT 713

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
               I  L    ++ + H +F++++ K        F++L    I + +
Sbjct: 714 IENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGK 761



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 122/290 (42%), Gaps = 68/290 (23%)

Query: 2   ANGNREFGVV-------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY 54
           A+  + FG++         PN V YN +IDGLCK G +  A+ +F  +  + + PN VTY
Sbjct: 551 ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTY 610

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            SLI G C   D + A YL+ EM+  G+  D   ++V+         +++A  L++ M  
Sbjct: 611 TSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFL 670

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            G         +I ++  L+DG CK GK++   +L   +   GL+PN +T    I  L  
Sbjct: 671 RG-------HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSE 723

Query: 175 DEQMDKAH-------------------DLFLDMEVKGVAP-------------------- 195
             ++ + H                    LF+DM  +G  P                    
Sbjct: 724 AGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKA 783

Query: 196 --------------NCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMP 230
                          C  +  ++ +  RK + S+ + LL+ MDKR N+ P
Sbjct: 784 LMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQP 833



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 6/211 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           + ++D   K G V  A E+ L M+D  + P++   N+L+     A+       +   M+ 
Sbjct: 51  DVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVG 110

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G+  DV T++ +++  CK R+ D A ++L  M + G      C +N V Y  LI GLC+
Sbjct: 111 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERG------CGLNTVTYNVLIAGLCR 164

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G ++ A    + +   GL+P+  TY   I+ LC   + ++A  L  +M    + PN V+
Sbjct: 165 SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVV 224

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +  L+  F+R+    +  ++++ M    V P
Sbjct: 225 YANLIDGFMREGNADEAFKMIKEMVAAGVQP 255



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 6/199 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M    I+P+V TY++LI  +C   + + A+ + +EM +RG   + VT+NV++  LC++  
Sbjct: 108 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 167

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           ++EA      M   G+ PD F       YG LI+GLCK  +   A+ L   ++ A L PN
Sbjct: 168 VEEAFGFKKDMEDYGLVPDGF------TYGALINGLCKSRRSNEAKALLDEMSCAELKPN 221

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VV Y   I     +   D+A  +  +M   GV PN + +  L+    +  +  +   LL+
Sbjct: 222 VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLK 281

Query: 222 SMDKRNVMPYASILSIIVD 240
            M + +  P     ++I++
Sbjct: 282 QMVRDSHRPDTITYNLIIE 300



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y  +++   K   ++K    F  M D+ +  +   Y  LIH    + +   A  
Sbjct: 464 KPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFR 523

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  E+   G   DV  ++ ++  LCK    ++A  +LD M + GV P      NIV Y  
Sbjct: 524 VLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDP------NIVCYNA 577

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK G +  AR +  S+   GL+PN VTY   I   C    +  A  L+ +M   G
Sbjct: 578 LIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATG 637

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           + P+  +++ L        +  + + L+  M  R    +ASI S
Sbjct: 638 ITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG---HASISS 678



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           + D G +S  V  +V++D   K+ ++ +A  ++ +M   G+ P   C         L+  
Sbjct: 39  LSDSGHRSPAV-LDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRC------CNALLKD 91

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           L +   +    ++ + +  AG+ P+V TY+  I A C   + D A  + ++M  +G   N
Sbjct: 92  LLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLN 151

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            V +  L+    R     +     + M+   ++P       +++ L K+  S
Sbjct: 152 TVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 203


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 130/242 (53%), Gaps = 11/242 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+TYN II G+CKE  VDKA EL   +      P+++TYN L+         +E E 
Sbjct: 240 EPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEK 299

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+  G + +VVT ++++  LC++ K++EA  LL  M + G++PDA+C      Y  
Sbjct: 300 LISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYC------YDP 353

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C+ G+L  A E  + +   G +P++V YN  +  LC   + D+A ++F  ++  G
Sbjct: 354 LIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVG 413

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIV-DLLVKNEI 247
             PN   + TL  +     +  + +E++  +  + + P    Y S++S +  D +V   I
Sbjct: 414 CPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAI 473

Query: 248 SL 249
            L
Sbjct: 474 EL 475



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN VT++ +I  LC++G V++A  L   MK++ + P+   Y+ LI GFC     + A 
Sbjct: 309 CKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLAT 368

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+  G   D+V +N IM  LC+  K D+A  + + + + G  P      N+ +Y 
Sbjct: 369 EFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPP------NVSSYN 422

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L   L   G    A E+   L   G+ P+ +TYN  I  LC D  +D+A +L +DM+  
Sbjct: 423 TLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSG 482

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              PN V +  ++    + N  +  IE+L +M ++   P  +   ++++
Sbjct: 483 RYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIE 531



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 107/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN +I   C  G +D A E+F ++  +N  P V+TY  LI         + A  L
Sbjct: 171 PDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKL 230

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +GL+ D +T+N I+  +CK   +D+A  LL  +   G +PD      I+ Y  L
Sbjct: 231 LDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPD------IITYNIL 284

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  L   GK     +L   +   G  PNVVT++I I  LC D ++++A +L   M+ KG+
Sbjct: 285 LRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGL 344

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+   +  L+  F R+       E L  M     +P
Sbjct: 345 KPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLP 381



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 10/231 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P  +TY  +I+    +G +D A +L  +M  + + P+ +TYN++I G C     ++A 
Sbjct: 204 CEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAF 263

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   +  RG + D++T+N+++  L    K  E  +L+  MI  G +P      N+V + 
Sbjct: 264 ELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKP------NVVTHS 317

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ GK++ A  L +S+   GL P+   Y+  I   C + ++D A +    M   
Sbjct: 318 ILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISD 377

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASILSII 238
           G  P+ V + T+M    R  +  + +E+   +D+     NV  Y ++ S +
Sbjct: 378 GCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSAL 428



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   YN +I G  K   ++ A  +  +MK     P+VVTYN +I  FC     + A  
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALE 194

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F E++    +  V+T+ ++++    +  +D A +LLD M+  G+ PD       + Y  
Sbjct: 195 IFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDT------LTYNA 248

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G+CK   +  A EL +SL+  G  P+++TYNI +  L +  +  +   L  +M   G
Sbjct: 249 IIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIG 308

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             PN V  + L+ +  R  +  + + LLRSM ++ + P A
Sbjct: 309 CKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDA 348



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 6/161 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V YNTI+ GLC+ G  D+A E+F ++ +    PNV +YN+L      + D   A 
Sbjct: 379 CLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRAL 438

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            + ++++++G+  D +T+N ++  LC++  +DEA  LL  M  G  RP      N+V+Y 
Sbjct: 439 EMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRP------NVVSYN 492

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            ++ GLCK+ +  +A E+  ++T  G  PN  TY + I  +
Sbjct: 493 IILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGI 533



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +    +I G      + KA  + +++ +    P+V  YN+LI GF  AN    A  +
Sbjct: 102 PDVILCTKLIKGFFNSRNIGKATRV-MEILERYGKPDVFAYNALISGFIKANQLENANRV 160

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  RG   DVVT+N+++   C   K+D A  + + +++        CE  ++ Y  L
Sbjct: 161 LDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDN------CEPTVITYTIL 214

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+     G +  A +L   +   GL P+ +TYN  I  +C +  +DKA +L   +  +G 
Sbjct: 215 IEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGC 274

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+ + +  L+ + + + + S+  +L+  M      P     SI++  L ++
Sbjct: 275 KPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRD 326



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 27  CKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV 86
           C+ G  +++      M D+   P+V+    LI GF  + +  +A  + +E+++R  + DV
Sbjct: 80  CRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRV-MEILERYGKPDV 138

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
             +N ++    K  +++ A R+LD M   G  PD      +V Y  +I   C  GKL  A
Sbjct: 139 FAYNALISGFIKANQLENANRVLDRMKSRGFLPD------VVTYNIMIGSFCSRGKLDLA 192

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
            E+ + L +    P V+TY I I A   D  +D A  L  +M  KG+ P+ + +  ++  
Sbjct: 193 LEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRG 252

Query: 207 FIRKNETSKVIELLRSMDKRNVMP 230
             ++    K  ELLRS+  R   P
Sbjct: 253 MCKEMMVDKAFELLRSLSSRGCKP 276



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 6/144 (4%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C PN  +YNT+   L   G   +A E+ L++ ++ I+P+ +TYNSLI   C     +E
Sbjct: 412 VGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDE 471

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L ++M     + +VV++N+I+  LCK  + ++A  +L  M + G +P      N   
Sbjct: 472 AIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQP------NETT 525

Query: 130 YGCLIDGLCKIGKLKNARELSQSL 153
           Y  LI+G+   G    A EL+ SL
Sbjct: 526 YILLIEGIGFSGLRAEAMELANSL 549


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 131/246 (53%), Gaps = 8/246 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA- 70
           C P+ VT+N +I+ LC++G + +A ++  +M      PN ++YN L+H  C       A 
Sbjct: 348 CSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAI 407

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           EYL I M+ RG   D+VT+N ++  LCK+ K+D A  +L+ +   G  P       ++ Y
Sbjct: 408 EYLDI-MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSP------VLITY 460

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGL K+GK  +A +L   +   GL P+++TY+  +  L  + ++D+A   F D+E 
Sbjct: 461 NTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEE 520

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            GV PN + + ++M    +  +T + I+ L  M  R   P  +   I+++ L    ++  
Sbjct: 521 MGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKE 580

Query: 251 SIPQFN 256
           ++   N
Sbjct: 581 ALELLN 586



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 127/240 (52%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +R+    C P+ +TY  +I+  CKE  V +A +L  +M+D+   P+VVTYN LI+G C  
Sbjct: 236 DRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKE 295

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA      M   G Q +V+T N+I+  +C   +  +A + L  MI+ G  P     
Sbjct: 296 GRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSP----- 350

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++V +  LI+ LC+ G +  A ++ + + + G  PN ++YN  +HALC D++M++A + 
Sbjct: 351 -SVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEY 409

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M  +G  P+ V + TL+ +  +  +    +E+L  +  +   P     + ++D L K
Sbjct: 410 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSK 469



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNTI+  LC  G + +A E+  +       P+V+TY  LI   C  +   +A  L
Sbjct: 210 PDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKL 269

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM D+G + DVVT+NV+++ +CK  ++DEA R L+ M      P   C+ N++ +  +
Sbjct: 270 LDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHM------PSYGCQPNVITHNII 323

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  +C  G+  +A +    + R G  P+VVT+NI I+ LC    + +A D+   M   G 
Sbjct: 324 LRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGC 383

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + +  L+ +  +  +  + IE L  M  R   P
Sbjct: 384 TPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYP 420



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 9/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +I G CK G +  A +L  +M   +++P+VVTYN+++   C +    EA  +
Sbjct: 178 PDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEV 234

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
               M R    DV+T+ ++++  CK   + +A +LLD M   G +PD      +V Y  L
Sbjct: 235 LDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPD------VVTYNVL 288

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G+CK G+L  A      +   G  PNV+T+NI + ++C+  +   A     +M  KG 
Sbjct: 289 INGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGC 348

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +P+ V F  L+    RK    + I++L  M +    P +   + ++  L K++
Sbjct: 349 SPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDK 401



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+++YN ++  LCK+  +++A E    M      P++VTYN+L+   C     + A 
Sbjct: 383 CTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 442

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  ++  +G    ++T+N ++D L K  K D+A +LLD M   G++PD      I+ Y 
Sbjct: 443 EILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPD------IITYS 496

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GL + GK+  A      L   G+ PN +TYN  +  LC   Q  +A D    M  +
Sbjct: 497 TLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVAR 556

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           G  P    +  L+     +    + +ELL  +  R V+  +S   ++V +
Sbjct: 557 GCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVVKI 606



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 9/191 (4%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P+++   SLI G C      +A  +   + D G   DV+T+NV++   CK  ++  A +L
Sbjct: 143 PDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQL 202

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           LD M    V PD      +V Y  ++  LC  GKLK A E+     +    P+V+TY I 
Sbjct: 203 LDRM---SVSPD------VVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTIL 253

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I A C +  + +A  L  +M  KG  P+ V +  L+    ++    + I  L  M     
Sbjct: 254 IEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGC 313

Query: 229 MPYASILSIIV 239
            P     +II+
Sbjct: 314 QPNVITHNIIL 324



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 9/152 (5%)

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +  L +N +++E  + L+ M+  G  PD      I+A   LI GLCK GK   A  + + 
Sbjct: 117 LRRLVRNGELEEGFKFLEDMVCRGDIPD------IIACTSLIRGLCKTGKTWKATRVMEI 170

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           L  +G +P+V+TYN+ I   C   ++  A  L   M    V+P+ V + T++ +     +
Sbjct: 171 LEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGK 227

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + +E+L    +R   P     +I+++   K
Sbjct: 228 LKEAMEVLDRQMQRECYPDVITYTILIEATCK 259


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 8/233 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V   N  T+  +I+GL K+G      +LF +MK   + PN+ TYN L++ +C    
Sbjct: 225 EMGLVA--NQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGK 282

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              A  LF EM +RG++++VVT+N ++  +C+  ++ EA +L+D M +  V P      N
Sbjct: 283 ICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSP------N 336

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           ++ Y  LI G C +G L  A  L   L   GL P++VTYNI I             DL  
Sbjct: 337 LITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAR 396

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +ME +G++P+ V  T L+ +++R  E  K  ++  SM+K  ++P   +  +++
Sbjct: 397 EMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLI 449



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 132/240 (55%), Gaps = 8/240 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV  + N VTYNT+I G+C+E  V +A++L  QMK   ++PN++TYN+LI GFC   
Sbjct: 294 RERGV--EANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVG 351

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           + ++A  L  ++   GL   +VT+N++++   K         L   M   G+ P      
Sbjct: 352 NLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSK---- 407

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V    LID   ++ +++ A ++  S+ + GL+P+V  Y + IH LC    M ++  LF
Sbjct: 408 --VTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLF 465

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M    V P+ VI+ T++  + +++ + + + LLR M+ + ++P  +  S I+ +L K+
Sbjct: 466 RSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKD 525



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYNT+I G C  G +DKA  L  Q+K   ++P++VTYN LI G+  A +      L
Sbjct: 335 PNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADL 394

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG+    VT  V++D   + ++M++A ++   M + G+ PD +       YG L
Sbjct: 395 AREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVY------VYGVL 448

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC  G +K + +L +S+    + P+ V YN  IH  C ++   +A  L  +ME KG+
Sbjct: 449 IHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGL 508

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            PN   +++++    +  +  +   LL  M +  + P ASIL++I
Sbjct: 509 VPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMI 553



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y T+IDG CK G +++A+  F +M +  +  N  T+  LI+G        +   L
Sbjct: 195 PNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDL 254

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M   GL  ++ T+N +M+E C   K+  A  L D M + GV      E N+V Y  L
Sbjct: 255 FEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGV------EANVVTYNTL 308

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G+C+  ++  A +L   + +A + PN++TYN  I   C+   +DKA  L   ++  G+
Sbjct: 309 IGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGL 368

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+ V +  L+  + +      V +L R M+ R + P     ++++D  V+
Sbjct: 369 SPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVR 419



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 107/215 (49%), Gaps = 11/215 (5%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENI--NPNVVTYNSLIHGFCYANDGNEAEYL 73
            + Y +II+   K   +DKA   F +M D+ +   PN+  +NSL+     +N   +A   
Sbjct: 93  ALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNI--FNSLLGSLVRSNCFEKAWLF 150

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E+ +R ++ DV +F +++   C+N  +D++ +LL L+   G+ P      N+V Y  L
Sbjct: 151 FNELKER-VKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSP------NVVIYTTL 203

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G ++ AR     +   GL+ N  T+ + I+ L          DLF  M++ G+
Sbjct: 204 IDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGL 263

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            PN   +  LM  +  + +  +  +L   M +R V
Sbjct: 264 FPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGV 298



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 2/116 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
            +FG+V  P+   Y  +I GLC +G + ++ +LF  M + ++ P+ V YN++IHG+C  +
Sbjct: 434 EKFGLV--PDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKED 491

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           +   A  L  EM  +GL  +V +++ I+  LCK+ K +EA  LLD MI+  ++P A
Sbjct: 492 NSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSA 547



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YNT+I G CKE    +A  L  +M+ + + PNV +Y+S+I   C      EAE 
Sbjct: 474 EPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEV 533

Query: 73  LFIEMMDRGLQSDVVTFNVI 92
           L  +M++  L+      N+I
Sbjct: 534 LLDKMIELQLKPSASILNMI 553



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/229 (19%), Positives = 91/229 (39%), Gaps = 29/229 (12%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A+ L LQ+    I+    T  SL+H      + +    L  E               I++
Sbjct: 56  AQSLILQILSNKISSPFFTVPSLLHHLTQNQNPSMTTALLYE--------------SIIN 101

Query: 95  ELCKNRKMDEATRLLDLMIQGGV--RPDAFCEI--NIVAYGCLIDGLCKIGKLKNARELS 150
              K++ +D+A    + M+  G+  RP+ F  +  ++V   C         +LK   +  
Sbjct: 102 AHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKERVKF- 160

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                     +V ++ I I   C +  +DK+  L   ++  G++PN VI+TTL+    + 
Sbjct: 161 ----------DVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKN 210

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            +  +       M +  ++      +++++ L K  +  +    F + K
Sbjct: 211 GDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMK 259


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  VT+N+++ GLCK    DKAKE+F  M   ++ P+V ++N LI GFC   +  EA  
Sbjct: 224 KPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMK 283

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + EM  RG+  DVV+F+ ++       KMD A   L  M   G+ PD       V Y  
Sbjct: 284 FYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDG------VIYTM 337

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C+ G +  A  +   +   G +P+VVTYN  ++ LC   ++  A +L  +M+ +G
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERG 397

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V P+   FTTL+  + R     K ++L  ++  + + P     + ++D
Sbjct: 398 VTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLID 445



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 132/252 (52%), Gaps = 14/252 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN----PNVVTYNSLIHGFCYA 64
           G+   P+ V Y  +I G C+ G + +A    L+++DE +     P+VVTYN+L++G C  
Sbjct: 325 GLGLVPDGVIYTMVIGGFCRAGSMSEA----LRVRDEMVGLGCLPDVVTYNTLLNGLCKQ 380

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +   +AE L  EM +RG+  D+ TF  ++   C++   ++A +L D ++   +RPD    
Sbjct: 381 HRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPD---- 436

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             +VAY  LIDG+C+ G L  A EL   +    + PN VTY+I I + C   Q+++A   
Sbjct: 437 --VVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGF 494

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +M  KG  PN + + +++  + R     K  + L+ M + N++P     + ++   +K
Sbjct: 495 LDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIK 554

Query: 245 NEISLNSIPQFN 256
            E    +   FN
Sbjct: 555 EENMHGAFNVFN 566



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+ C P+ VTYNT+++GLCK+  +  A+EL  +MK+  + P++ T+ +LIHG+C   +  
Sbjct: 360 GLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFE 419

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF  ++ + L+ DVV +N ++D +C+   + +A  L D M    + P      N V
Sbjct: 420 KALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFP------NHV 473

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LID  C+ G+++ A      +   G +PN++TYN  I   C    + K       M
Sbjct: 474 TYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKM 533

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
               + P+ + F TL+  +I++        +   M+K  V P A   ++I++
Sbjct: 534 MQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIIN 585



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 6/245 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T N ++   CK    DKA  +  +M+   + P+VVT+N LI     A D + A  L 
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M ++GL+  +VTFN ++  LCK+R+ D+A  +   M Q  V PD      + ++  LI
Sbjct: 216 DSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPD------VRSFNILI 269

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C++G+++ A +  + + + G+ P+VV+++  I       +MD A     +M+  G+ 
Sbjct: 270 GGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLV 329

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
           P+ VI+T ++  F R    S+ + +   M     +P     + +++ L K    L++   
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEEL 389

Query: 255 FNRQK 259
            N  K
Sbjct: 390 LNEMK 394



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 110/212 (51%), Gaps = 6/212 (2%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           + G+   A+E +  +   +   N  T N ++H +C + + ++A+ +  EM  R +  DVV
Sbjct: 134 RAGWPHLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVV 193

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           T NV++D   +   +D A  L+D M   G++P       IV +  ++ GLCK  +   A+
Sbjct: 194 THNVLIDARFRAGDVDAAIALVDSMANKGLKP------GIVTFNSVLKGLCKHRRFDKAK 247

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           E+ +++ +  + P+V ++NI I   C   ++++A   + +M+ +GV P+ V F+ L+  F
Sbjct: 248 EVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLF 307

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             + +       LR M    ++P   I ++++
Sbjct: 308 STRGKMDHAAAYLREMKGLGLVPDGVIYTMVI 339



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 6/148 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN+II G C+ G V K ++   +M  +NI P+++T+N+LIHG+    + + A  +
Sbjct: 505 PNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNV 564

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M    +Q D VT+N+I++   +   M+EA R+   M   G+ PD +       Y  L
Sbjct: 565 FNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRY------TYMSL 618

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPN 161
           I+G    G  K A +L   +   G  P+
Sbjct: 619 INGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 95/183 (51%), Gaps = 6/183 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +ID  C++G V++A     +M  +   PN++TYNS+I G+C + +  + +  
Sbjct: 470 PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQF 529

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM   +  D++TFN ++    K   M  A  + ++M +  V+PDA      V Y  +
Sbjct: 530 LQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDA------VTYNMI 583

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G  + G ++ A  + + +  +G+ P+  TY   I+         +A  L  +M  +G 
Sbjct: 584 INGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGF 643

Query: 194 APN 196
           AP+
Sbjct: 644 APD 646



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 6/173 (3%)

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           AE  +  ++    + +  T N+++   CK+ + D+A  ++  M +  V PD      +V 
Sbjct: 141 AEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPD------VVT 194

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LID   + G +  A  L  S+   GL P +VT+N  +  LC   + DKA ++F  M+
Sbjct: 195 HNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMD 254

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              VAP+   F  L+  F R  E  + ++  + M +R V P     S ++ L 
Sbjct: 255 QCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLF 307



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN II+G  ++G +++A  +F +M    I P+  TY SLI+G   A +  EA  
Sbjct: 574 QPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQ 633

Query: 73  LFIEMMDRGLQSD 85
           L  EMM RG   D
Sbjct: 634 LHDEMMHRGFAPD 646


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V YN IID LCK   V+ A + F ++  + I PNVVTY +L++G C +   N+A  
Sbjct: 187 RPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAAR 246

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  +V+T++ ++D   KN K+ EA  + + M++  + PD      IV Y  
Sbjct: 247 LLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPD------IVTYSS 300

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLC   ++  A ++   +   G  P+VV+YN  I+  C  ++++    LF  M  +G
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRG 360

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V + TL+  F +  +  K  E    MD   V P     +I++  L  N
Sbjct: 361 LVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDN 413



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY  +++GLC  G  + A  L   M    I PNV+TY++L+  F       EA+ 
Sbjct: 222 RPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKE 281

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM+   +  D+VT++ +++ LC + ++DEA ++ DLM+  G  PD      +V+Y  
Sbjct: 282 IFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPD------VVSYNT 335

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK  ++++  +L + +++ GL+ N VTYN  I        +DKA + F  M+  G
Sbjct: 336 LINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFG 395

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           V+P+   +  L+          K + +   M K     +++ Y +++
Sbjct: 396 VSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVI 442



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+++I+GLC    +D+A ++F  M  +   P+VV+YN+LI+GFC A    +   L
Sbjct: 293 PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKL 352

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M  RGL ++ VT+N ++    +   +D+A      M   GV PD      I  Y  L
Sbjct: 353 FRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPD------IWTYNIL 406

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC  G L+ A  + + + ++ +  ++VTY   I  +C   +++ A  LF  + +KG+
Sbjct: 407 LGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGL 466

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
            P+ V +TT+M     K    +V  L   M +  +M   S+L +
Sbjct: 467 KPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKNDSMLCL 510



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 128/242 (52%), Gaps = 20/242 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT  ++++G C+   V  A  L  +M +    P++V YN++I   C     N+A  
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALD 211

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F E+  +G++ +VVT+  +++ LC + + ++A RLL  MI+  + P      N++ Y  
Sbjct: 212 FFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITP------NVITYSA 265

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D   K GK+  A+E+ + + R  + P++VTY+  I+ LC  +++D+A+ +F  M  KG
Sbjct: 266 LLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             P+ V + TL+  F +       ++L R M +R               LV N ++ N++
Sbjct: 326 CFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRG--------------LVNNTVTYNTL 371

Query: 253 PQ 254
            Q
Sbjct: 372 IQ 373



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 104/185 (56%), Gaps = 6/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT+I+G CK   V+   +LF +M    +  N VTYN+LI GF    D ++A+
Sbjct: 326 CFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQ 385

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F +M   G+  D+ T+N+++  LC N  +++A  + + M +  +      +++IV Y 
Sbjct: 386 EFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEM------DLDIVTYT 439

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+CK GK+++A  L  SL+  GL P++VTY   +  LC      +   L+  M+ +
Sbjct: 440 TVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQE 499

Query: 192 GVAPN 196
           G+  N
Sbjct: 500 GLMKN 504



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 119/226 (52%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +N ++  + K    D    L  +M+   I  ++ T+N +I+ FC     + A  +
Sbjct: 83  PSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSV 142

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G + D VT   +++  C+  ++ +A  L+D M++ G RPD      IVAY  +
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPD------IVAYNAI 196

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK  ++ +A +  + + R G+ PNVVTY   ++ LCN  + + A  L  DM  + +
Sbjct: 197 IDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKI 256

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            PN + ++ L+ +F++  +  +  E+   M + ++ P    Y+S++
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLI 302



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 6/211 (2%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A  LF +M      P++V +N L+         +    L  +M   G+++D+ TFN++++
Sbjct: 69  AINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             C   ++  A  +L  M++ G  PD       V  G L++G C+  ++ +A  L   + 
Sbjct: 129 CFCCCFQVSLALSVLGKMLKLGYEPDR------VTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
             G  P++V YN  I +LC   +++ A D F ++  KG+ PN V +T L+         +
Sbjct: 183 EIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWN 242

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               LLR M KR + P     S ++D  VKN
Sbjct: 243 DAARLLRDMIKRKITPNVITYSALLDAFVKN 273


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K ++ TYN +I  L + GFV KA+ L ++M++E I P VVTYN++IHG         A+ 
Sbjct: 305 KASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQV 364

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM   GL  DV+T+N +++  CK   + EA  LL  + + G+ P       ++ Y  
Sbjct: 365 KFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAP------TVLTYNT 418

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C++G L  AR L + +   G  P+V TY I ++       +  A + F +M  KG
Sbjct: 419 LIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKG 478

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+C  + T + + +  + T    +L   M  + + P     ++I+D L K 
Sbjct: 479 LQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKT 531



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 124/266 (46%), Gaps = 31/266 (11%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  G++  P+ +TYN++++  CK G + +A  L   ++   + P V+TYN+LI G+C   
Sbjct: 370 RAMGLL--PDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLG 427

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-- 123
           D  EA  L  EM+++G   DV T+ ++M+   K R +  A    D M+  G++PD F   
Sbjct: 428 DLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYN 487

Query: 124 -----EINI----------------------VAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                E+ +                      V Y  +IDGLCK G LK+A+ L   +   
Sbjct: 488 TRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSD 547

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P+ +TY   IHA C    + +A  L   M   G+ P+ V +T L+ +  R+      
Sbjct: 548 GLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSA 607

Query: 217 IELLRSMDKRNVMPYASILSIIVDLL 242
               R M    + P     ++++  L
Sbjct: 608 YGWFRKMLDVGIEPNEITYNVLIHAL 633



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 117/262 (44%), Gaps = 41/262 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYNT+IDG C+ G + +A+ L  +M ++   P+V TY  L++G     +   A   
Sbjct: 411 PTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREF 470

Query: 74  FIEMMDRGLQSD-----------------------------------VVTFNVIMDELCK 98
           F EM+ +GLQ D                                    VT+NVI+D LCK
Sbjct: 471 FDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCK 530

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              + +A RL   M+  G++PD       + Y CLI   C+ G L+ AR+L   +   GL
Sbjct: 531 TGNLKDAKRLKTKMVSDGLQPDC------ITYTCLIHAHCERGLLREARKLLNGMVSDGL 584

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+VVTY I +H  C    +  A+  F  M   G+ PN + +  L+ +      T     
Sbjct: 585 QPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFR 644

Query: 219 LLRSMDKRNVMPYASILSIIVD 240
               M +R + P     ++++D
Sbjct: 645 HFHEMLERGLAPNKYTYTLLID 666



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN IIDGLCK G +  AK L  +M  + + P+ +TY  LIH  C      EA  L
Sbjct: 516 PDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKL 575

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  GLQ  VVT+ +++   C+   +  A      M+  G+ P      N + Y  L
Sbjct: 576 LNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEP------NEITYNVL 629

Query: 134 IDGLCKIGKLKNA-RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           I  LC  G+   A R   + L R GL PN  TY + I   C +     A  L+ +M   G
Sbjct: 630 IHALCMTGRTPLAFRHFHEMLER-GLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNG 688

Query: 193 VAPNCVIFTTLMPSF 207
           + P+      L   F
Sbjct: 689 IPPDYCTHNALFKGF 703



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 106/229 (46%), Gaps = 9/229 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N ++  L      D  + ++ +M    + P +VTYN+L+  F      +EA  L
Sbjct: 200 PDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASML 259

Query: 74  FIEMMDR--GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             EM  +  G   + VTFNV++  L +   ++ A +L+D M +   +  +F       Y 
Sbjct: 260 LKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSM-RLSKKASSF------TYN 312

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  L + G ++ A  L   +   G+MP VVTYN  IH L   EQ + A   F +M   
Sbjct: 313 PLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAM 372

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P+ + + +L+  + +     + + LL  + +  + P     + ++D
Sbjct: 373 GLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLID 421



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 6/154 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY  +I   C+ G + +A++L   M  + + P+VVTY  L+H  C   +   A  
Sbjct: 550 QPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYG 609

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M+D G++ + +T+NV++  LC   +   A R    M++ G+ P+ +       Y  
Sbjct: 610 WFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKY------TYTL 663

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
           LIDG C+ G   +A  L   + + G+ P+  T+N
Sbjct: 664 LIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHN 697



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY  ++   C+ G +  A   F +M D  I PN +TYN LIH  C       A  
Sbjct: 585 QPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFR 644

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            F EM++RGL  +  T+ +++D  C+     +A RL   M Q G+ PD +C  N +  G
Sbjct: 645 HFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPD-YCTHNALFKG 702



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +IDG C+EG    A  L+ +M    I P+  T+N+L  GF   +  +  EY+
Sbjct: 656 PNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDEGHMYHAIEYM 715


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 9/246 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VTY  I+DGLCK      A +L  +M+D+  +PN+ TYN ++ G C     +EA+
Sbjct: 108 CLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAK 167

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM  RG   DVVT+N  +  LCK  ++DEA + L  M    V PD      +V+Y 
Sbjct: 168 KMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPD------VVSYT 218

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GLCK G L +A  +   ++  G  P+VVTY+  I   C   ++++A  L   M   
Sbjct: 219 TVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKL 278

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  PN V + +L+ +  R     K  ++L  M++R   P     +  +D L K E    +
Sbjct: 279 GCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKA 338

Query: 252 IPQFNR 257
              F+R
Sbjct: 339 KAVFDR 344



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G  C P+   YN +I G  K     +A +   +M   +  P VVTY +++ G C A 
Sbjct: 69  KEMG--CVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAE 126

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  L  EM D+G   ++ T+NVI++ LC+ RK+DEA ++L+ M   G  PD     
Sbjct: 127 RTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD----- 181

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y   I GLCK  ++  AR+    L R  + P+VV+Y   I+ LC    +D A  + 
Sbjct: 182 -VVTYNSFIKGLCKCDRVDEARKF---LARMPVTPDVVSYTTVINGLCKSGDLDSASRML 237

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASILSII 238
             M  +G  P+ V +++L+  F +  E  + + LL SM K     N++ Y S+L  +
Sbjct: 238 DHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGAL 294



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 39/285 (13%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY+++IDG CK G V++A  L   M      PN+V YNSL+          +AE
Sbjct: 245 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAE 304

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE----INI 127
            + +EM  RG   DVV++N  +D LCK  ++ +A  + D M++ G  P+A       ++I
Sbjct: 305 DMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDI 364

Query: 128 VAYGCLIDGLCKIGKLKNA------------------------------RELSQSLTRAG 157
           + Y  L+DGLCK G+   A                              R++ ++L    
Sbjct: 365 LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHK 424

Query: 158 LM-----PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
            M      NVVT+NI +H LC D+++  A  + L M  +G  P+ V + TL+ +  +  +
Sbjct: 425 QMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGK 484

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           ++  +EL     K   +P     S ++  LV   ++  +   F +
Sbjct: 485 SAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTK 529



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 9/234 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  T+  ++ GLC+   ++KA++L  +MK+    P+   YN+LI G+  A D  +A 
Sbjct: 38  CQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAF 97

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               EM+       VVT+  I+D LCK  +  +A +LLD M   G  P      NI  Y 
Sbjct: 98  KFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSP------NIYTYN 151

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +++GLC+  KL  A+++ + +   G  P+VVTYN  I  LC  +++D+A      M   
Sbjct: 152 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP-- 209

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V P+ V +TT++    +  +      +L  M  R   P     S ++D   K 
Sbjct: 210 -VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKG 262



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 124/266 (46%), Gaps = 39/266 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN V YN+++  L + G + KA+++ ++M+     P+VV+YN+ I G C A    +A+
Sbjct: 280 CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAK 339

Query: 72  YLFIEMMDRG----------LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV-RPD 120
            +F  M++RG          L  D++ + V++D LCK  + DEA  L   ++   +  PD
Sbjct: 340 AVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPD 399

Query: 121 AF---------CE-------------------INIVAYGCLIDGLCKIGKLKNARELSQS 152
            F         C+                    N+V +  L+ GLC   +L +A  +  +
Sbjct: 400 VFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLT 459

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G +P+ VTY   + A+C   +   A +LF +    G  P+ V ++ L+   + +N 
Sbjct: 460 MVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENM 519

Query: 213 TSKVIELLRSMDKRNVMPYASILSII 238
             +   L   + +R  +P    L ++
Sbjct: 520 AEEAYLLFTKLVERRWVPDDKTLGLL 545



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 7/222 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN ++  L +E   DKA  +F +M D++  P+  T+  L+ G C +N   +A  L 
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M + G   D   +N ++    K +   +A + L  M++    P       +V Y  ++
Sbjct: 66  GRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLP------TVVTYTNIV 119

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK  + ++A +L   +   G  PN+ TYN+ +  LC + ++D+A  +  +M V+G  
Sbjct: 120 DGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF 179

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMD-KRNVMPYASIL 235
           P+ V + + +    + +   +  + L  M    +V+ Y +++
Sbjct: 180 PDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVI 221



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 11/179 (6%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C+P+   YN ++D  CK   +DKA ++  QM ++N   NVVT+N L+HG C  +  ++A
Sbjct: 395 ICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC-NVVTWNILVHGLCVDDRLSDA 453

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           E + + M+D G   D VT+  ++D +CK  K   A  L +  ++GG  PD      +V Y
Sbjct: 454 ETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPD------VVTY 507

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH---ALCNDEQMDKAHDLFL 186
             LI GL      + A  L   L     +P+  T  + +H    L N  +  +  DL+L
Sbjct: 508 SALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGL-LHRKLKLLNKPRKAEVVDLYL 565



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G + +V T+N ++ +L +  + D+A+ +   MI    +PDAF       +  L+ GLC+ 
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAF------TFAILLRGLCRS 55

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
            +L+ AR+L   +   G +P+   YN  I      +   +A     +M      P  V +
Sbjct: 56  NQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTY 115

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           T ++    +   T   ++LL  M  +   P     ++IV+ L
Sbjct: 116 TNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGL 157



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 60/136 (44%)

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
           E N+  Y  L+  L +  +   A  + Q +      P+  T+ I +  LC   Q++KA  
Sbjct: 4   EHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARK 63

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           L   M+  G  P+  I+  L+  + +  +  +  + L  M K + +P     + IVD L 
Sbjct: 64  LLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLC 123

Query: 244 KNEISLNSIPQFNRQK 259
           K E + +++   +  +
Sbjct: 124 KAERTRDAVKLLDEMR 139


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 128/253 (50%), Gaps = 29/253 (11%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            R F  +  PN  T+N +ID LCKEG + +A+ LF +MK+    P+VVT+NSLI G+   
Sbjct: 177 RRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKC 236

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP----- 119
            + +E E L  EM   G ++DVVT+N +++  CK  +M+ A      M + GV       
Sbjct: 237 GELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTF 296

Query: 120 ----DAFCE--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
               DAFC+                    +N   Y CLIDG CK G+L +A  L   + R
Sbjct: 297 STFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR 356

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G+  NVVTY + +  LC + ++ +A D+   ME  GV  N +++TTL+        + K
Sbjct: 357 QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEK 416

Query: 216 VIELLRSMDKRNV 228
            + LL  M  + +
Sbjct: 417 ALGLLSEMKNKGL 429



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 124/245 (50%), Gaps = 6/245 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VT++T +D  CKEG V +A +LF QM+   +  N  TY  LI G C A   ++A  L 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +G+  +VVT+ V++D LCK RK+ EA  +L +M + GVR       N + Y  LI
Sbjct: 352 DEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRA------NELLYTTLI 405

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G       + A  L   +   GL  ++  Y   I  LCN  ++D+A  L   M+  G+ 
Sbjct: 406 HGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLE 465

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
           PN +I+TT+M +  +  +  + I +L+ +      P       ++D L K      +I  
Sbjct: 466 PNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISH 525

Query: 255 FNRQK 259
           FN+ +
Sbjct: 526 FNKMR 530



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 8/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + Y T++D   K G V +A  +  ++ D    PNV+TY +LI G C A   +EA  
Sbjct: 465 EPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAIS 524

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M D GL  +V  +  ++D LCKN  ++EA +L + M+  G+  D       V Y  
Sbjct: 525 HFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDK------VVYTA 578

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG  K G L +A  L   +  +GL  ++  Y   I   CN   M +A ++F +M   G
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +AP+  ++  L+  + +     + I L   M++  V+P
Sbjct: 639 IAPDRAVYNCLISKYQKLGNLEEAISLQDEMER--VLP 674



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 6/209 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTY  ++DGLCKE  V +A+++   M+   +  N + Y +LIHG     +  +A  L 
Sbjct: 362 NVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLL 421

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM ++GL+ D+  +  ++  LC   K+DEA  LL  M + G+ P      N + Y  ++
Sbjct: 422 SEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP------NYIIYTTMM 475

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D   K GK+  A  + Q +  +G  PNV+TY   I  LC    +D+A   F  M   G+ 
Sbjct: 476 DACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLD 535

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           PN   +T L+    +    ++ ++L   M
Sbjct: 536 PNVQAYTALVDGLCKNGCLNEAVQLFNEM 564



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT T N I+  L +    D++  L  ++ ++   PNV T+N +I   C   +  EA  L
Sbjct: 155 PNTRTCNHILLRLAR----DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSL 210

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M + G   DVVTFN ++D   K  ++DE  +L++ M + G      C+ ++V Y  L
Sbjct: 211 FSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG------CKADVVTYNAL 264

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CK G+++ A     ++ R G+M NVVT++  + A C +  + +A  LF  M V+G+
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           A N   +T L+    +       I LL  M ++ V       +++VD L K  
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKER 377



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 8/185 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TY  +IDGLCK G +D+A   F +M+D  ++PNV  Y +L+ G C     NEA  
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +G+  D V +  ++D   K   + +A  L   MI  G++ D FC      Y C
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFC------YTC 613

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I G C +  +  ARE+   +   G+ P+   YN  I        +++A  + L  E++ 
Sbjct: 614 FISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEA--ISLQDEMER 671

Query: 193 VAPNC 197
           V P+C
Sbjct: 672 VLPSC 676



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + N + Y T+I G       +KA  L  +MK++ +  ++  Y +LI G C  +  +EA+ 
Sbjct: 395 RANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M + GL+ + + +  +MD   K+ K+ EA  +L  ++  G +P      N++ Y  
Sbjct: 455 LLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQP------NVITYCA 508

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK G +  A      +   GL PNV  Y   +  LC +  +++A  LF +M  KG
Sbjct: 509 LIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           ++ + V++T L+  ++++        L   M
Sbjct: 569 MSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 26/199 (13%)

Query: 77  MMDRGLQSDVV----------------TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           + DRGL  D V                T N I+  L ++R    + RL+  + +    P+
Sbjct: 132 LADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDR----SGRLVRRLFEQLPAPN 187

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            F   NIV     ID LCK G+L  AR L   +   G +P+VVT+N  I       ++D+
Sbjct: 188 VF-TFNIV-----IDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDE 241

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              L  +M   G   + V +  L+  F +            +M +  VM      S  VD
Sbjct: 242 VEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVD 301

Query: 241 LLVKNEISLNSIPQFNRQK 259
              K  +   ++  F + +
Sbjct: 302 AFCKEGLVREAMKLFAQMR 320


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 129/231 (55%), Gaps = 9/231 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TYNT+I+G CK   V+   ELF +M    +  N VTY ++I GF  A D + A+
Sbjct: 394 CLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQ 453

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+   + +D++T+++++  LC   K+D A  +   + +  +      E+NI  Y 
Sbjct: 454 MVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEM------ELNIFIYN 507

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G+CK GK+  A +L  SL+   + P+VVTYN  I  LC+   + +A DLF  M+  
Sbjct: 508 TMIEGMCKAGKVGEAWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKED 564

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   + TL+ + +R  + +   EL++ M     +  AS +S++ ++L
Sbjct: 565 GTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML 615



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY T+++GLCK G +D A  L  +M+   I  NVV +N++I   C       A 
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAV 278

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  +G++ +VVT+N +++ LC   +  +A+RLL  M++  + P      N+V + 
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINP------NVVTFN 332

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   K GKL  A +L + + +  + P+ +TYN+ I+  C   ++D+A  +F  M  K
Sbjct: 333 ALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK 392

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
              PN   + TL+  F +       +EL R M +R    N + Y +I+
Sbjct: 393 DCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 133/254 (52%), Gaps = 22/254 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V +NTIID LCK   V+ A +LF +M+ + I PNVVTYNSLI+  C     ++A  
Sbjct: 255 KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR 314

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+++ +  +VVTFN ++D   K  K+ EA +L + MIQ  + PD       + Y  
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDT------ITYNL 368

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C   +L  A+++ + +     +PN+ TYN  I+  C  ++++   +LF +M  +G
Sbjct: 369 LINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRG 428

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASILS------------ 236
           +  N V +TT++  F +  +      + + M       ++M Y+ +L             
Sbjct: 429 LVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTAL 488

Query: 237 IIVDLLVKNEISLN 250
           +I   L K+E+ LN
Sbjct: 489 VIFKYLQKSEMELN 502



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY+  I+  C+   +  A  +  +M      P++VT +SL++G+C++   ++A  L  +M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++ G + D  TF  ++  L  + K  EA  L+D M+Q G +PD      +V YG +++GL
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPD------LVTYGTVVNGL 233

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G +  A  L   +  A +  NVV +N  I +LC    ++ A DLF +ME KG+ PN 
Sbjct: 234 CKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNV 293

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V + +L+         S    LL +M ++ + P     + ++D   K
Sbjct: 294 VTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFK 340



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT +++++G C    +  A  L  QM +    P+  T+ +LIHG    N  +EA  
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVA 209

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ RG Q D+VT+  +++ LCK   +D A  LL+ M    ++       N+V +  
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKA------NVVIFNT 263

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK   ++ A +L   +   G+ PNVVTYN  I+ LCN  +   A  L  +M  K 
Sbjct: 264 IIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKK 323

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V F  L+ +F ++ +  +  +L   M +R++ P
Sbjct: 324 INPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDP 361



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+I GLC +  + +A +LF +MK++   PN  TYN+LI       D   +  
Sbjct: 532 KPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAE 591

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           L  EM   G   D  T +++ + L   R
Sbjct: 592 LIKEMRSSGFVGDASTISLVTNMLHDGR 619


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 128/260 (49%), Gaps = 30/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN+II G CK+G + KA +L   M  + I+PN++TYN+LI+G C A +   A  L
Sbjct: 654 PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAREL 713

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
           F  +  +GL  + VT+  I+D  CK+  + +A RL D M   GV PD+F    ++  GC 
Sbjct: 714 FDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALID-GCR 772

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       L+DG CK GK+  A +L + +    + P+ VT
Sbjct: 773 KEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVT 832

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y I I   C    + +A   F+DM+ + + PN + +T L+  +      S++  L   M 
Sbjct: 833 YTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMI 892

Query: 225 KRNVMPYASILSIIVDLLVK 244
            +++ P     S+++D  +K
Sbjct: 893 AKDIEPDGVTWSVMIDAHLK 912



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 131/263 (49%), Gaps = 41/263 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---------- 62
           +P+ + YN++I GLCK   +++AK+  ++M +  + PNV TY +LIHG+C          
Sbjct: 513 QPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADR 572

Query: 63  -----------------------YANDGN--EAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                  Y  +G+  EA  +F  M+ R +  DV T++ ++  L 
Sbjct: 573 YFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLL 632

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +N K+  A  LL   ++ G+ PD F       Y  +I G CK G +  A +L + + + G
Sbjct: 633 RNGKLQGAMELLSEFLEKGLVPDVF------TYNSIISGFCKQGGIGKAFQLHEYMCQKG 686

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PN++TYN  I+ LC   ++++A +LF  +  KG+A N V + T++  + +    SK  
Sbjct: 687 ISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAF 746

Query: 218 ELLRSMDKRNVMPYASILSIIVD 240
            L   M  + V P + + S ++D
Sbjct: 747 RLFDEMTLKGVPPDSFVYSALID 769



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+T TYN +I+G  KE    + K+L  +MK  N+ P   T   +I+G C      +A  
Sbjct: 408 KPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASR 467

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M+  G++ + V +  ++    +  +  EA R+L +M + GV+PD  C      Y  
Sbjct: 468 VFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLC------YNS 521

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLCK  K++ A++    +   GL PNV TY   IH  C   +M  A   F +M   G
Sbjct: 522 VIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCG 581

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +APN V+ T L+  + ++  T++   + R M  R+V P     S ++  L++N
Sbjct: 582 IAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRN 634



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 40/281 (14%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y T+I G  +EG   +A  +   M  + + P+V+ YNS+I G C +    EA+ 
Sbjct: 478 KPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKD 537

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
             +EM++RGL+ +V T+  ++   CK+ +M  A R    M+  G+ P         D +C
Sbjct: 538 YLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYC 597

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           +                     ++  Y  LI GL + GKL+ A EL       GL+P+V 
Sbjct: 598 KEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVF 657

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  I   C    + KA  L   M  KG++PN + +  L+    +  E  +  EL   +
Sbjct: 658 TYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGI 717

Query: 224 DKRNVMPYASILSIIVDLLVK-----------NEISLNSIP 253
             + +   A   + I+D   K           +E++L  +P
Sbjct: 718 PGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVP 758



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TY  +I+   + G   + K L  +M+++  +P++VTYN +I G C A + +EA  L 
Sbjct: 235 DVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELK 294

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  +GL +DV T+++++D   K ++  EA  +L+ M   G++P        VAY  LI
Sbjct: 295 KLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGH------VAYTALI 348

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  + G    A  + + +   G+  N+ TYN  +  +C    M+KA  L  +M + G+ 
Sbjct: 349 DGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIK 408

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+   +  ++  ++++  TS+V +LL  M K N++P A    +I++ L ++
Sbjct: 409 PDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRH 459



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 119/254 (46%), Gaps = 41/254 (16%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKEL--------------------------------- 38
           C P+ VTYN +I GLC+ G VD+A EL                                 
Sbjct: 267 CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAK 326

Query: 39  --FLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
               +M  + + P  V Y +LI GF    D  EA  +  EM+ RG++ ++ T+N ++  +
Sbjct: 327 LMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGV 386

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK   M++A  LL+ MI  G++PD         Y  +I+G  K       ++L   + ++
Sbjct: 387 CKFGDMEKADALLNEMIMVGIKPDT------QTYNNMIEGYLKEQNTSRVKDLLSEMKKS 440

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
            L+P   T  + I+ LC    ++ A  +F  M   GV PN VI+TTL+   +++    + 
Sbjct: 441 NLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEA 500

Query: 217 IELLRSMDKRNVMP 230
           + +L+ MDK+ V P
Sbjct: 501 VRILKVMDKKGVQP 514



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   T   II+GLC+ G ++ A  +F  M    + PN V Y +LI G        EA  +
Sbjct: 444 PTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRI 503

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  +G+Q DV+ +N ++  LCK+RKM+EA   L  MI+ G++P      N+  YG L
Sbjct: 504 LKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKP------NVYTYGAL 557

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK G+++ A    + +   G+ PN V     I   C +    +A  +F  M  + V
Sbjct: 558 IHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSV 617

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
            P+   ++ L+   +R  +    +ELL    ++ ++P    Y SI+S
Sbjct: 618 HPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIIS 664



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 7/232 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTY TIIDG CK G + KA  LF +M  + + P+   Y++LI G     +  +A  LF
Sbjct: 725 NAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLF 784

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           +E + +G  S   + N +MD  CK+ K+ EA +LL+ M+   V+PD       V Y  LI
Sbjct: 785 LESVQKGFAS-TSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDH------VTYTILI 837

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D  CK G LK A +    + +  LMPN +TY   +       +  +   LF +M  K + 
Sbjct: 838 DYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIE 897

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           P+ V ++ ++ + +++ +  K ++L+  M K+      ++  +++D L + E
Sbjct: 898 PDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKE 949



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 8/177 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY  +ID  CK GF+ +A++ F+ M+  N+ PN +TY +L+ G+  A   +E   
Sbjct: 827 KPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFA 886

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIVAYG 131
           LF EM+ + ++ D VT++V++D   K     +  +L+D M+ +GG      C +      
Sbjct: 887 LFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHV------ 940

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            LID LC+   +    ++ + +   GL  ++ T +  +       +MD A  +   M
Sbjct: 941 -LIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSM 996



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 8/229 (3%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
             +T + N ++DG CK G V +A +L   M D+++ P+ VTY  LI   C      EAE  
Sbjct: 793  ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQF 852

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            F++M  R L  + +T+  ++       +  E   L D MI   + PD       V +  +
Sbjct: 853  FVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDG------VTWSVM 906

Query: 134  IDGLCKIG-KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            ID   K G  +K  + +   L + G +   V + + I  LC  E + +   +   +E +G
Sbjct: 907  IDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCH-VLIDPLCRKEHVSEVLKVLEKIEEQG 965

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
            +  +    +TL+  F +  +      +L+SM +   +P ++ L+ ++++
Sbjct: 966  LNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLINV 1014



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           DRG     V F +++D   K    DEA          G + + F  + ++    L+  L 
Sbjct: 164 DRG-----VVFELLIDGYKKKGLFDEAVSFFL-----GAKRNGFV-VGLLCCNGLLSDLL 212

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K  KL+        +  A ++ +V TY   I+A        +   L  +ME KG +P+ V
Sbjct: 213 KANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLV 272

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +  ++    R  E  +  EL + MDK+ ++      SI++D   K +
Sbjct: 273 TYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQK 320



 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYANDGNEA 70
            +P+ VT++ +ID   KEG   K  +L   M  K  N++ NV   + LI   C     +E 
Sbjct: 897  EPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVC--HVLIDPLCRKEHVSEV 954

Query: 71   EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
              +  ++ ++GL   + T + ++    K  KMD A R+L  M++    PD+
Sbjct: 955  LKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDS 1005


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y+T+I+G  KEG +DK    + +M D+ I+PNVVTYNS+I   C A   ++A 
Sbjct: 8   CPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAM 67

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G+  D +T+N I+   C + +  EA   L  M   GV PD      +V Y 
Sbjct: 68  EVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPD------VVTYN 121

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK G+   AR++  S+T+ GL P++ TY   +        + + H L LD+ V+
Sbjct: 122 SLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGL-LDLMVR 180

Query: 192 -GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P A     ++D+L K+
Sbjct: 181 NGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKS 235



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN+II  LCK   VDKA E+   M    + P+ +TYNS++HGFC +    EA   
Sbjct: 45  PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 104

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++PD      I  YG L
Sbjct: 105 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD------ITTYGTL 158

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ PN   ++I + A    E++++A  +F  M  +G+
Sbjct: 159 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGL 218

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V + T++    +       +     M    + P
Sbjct: 219 NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP 255



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 70/107 (65%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+ID LCK G V+ A   F QM DE + P+ + YNSLIH  C  +   +AE L
Sbjct: 220 PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEEL 279

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           F+EM+DRG+    + FN I+D  CK  ++ E+ +L DLM++ GV+PD
Sbjct: 280 FLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPD 326



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P+VV+Y+++I+GF    D ++    + EM+D+ +  +VVT+N I+  LCK + +D+A  +
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEV 69

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           L  M++ GV PD       + Y  ++ G C  G+ K A    + +   G+ P+VVTYN  
Sbjct: 70  LTTMVKSGVMPDC------MTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSL 123

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           +  LC + +  +A  +F  M  +G+ P+   + TL+  +  K    ++  LL  M +  +
Sbjct: 124 MDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 183

Query: 229 MPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            P   + SI+V    K E    ++  F++ +
Sbjct: 184 HPNHYVFSILVCAYAKQEKVEEAMLVFSKMR 214



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 45/223 (20%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG----- 67
           +P+ VTYN+++D LCK G   +A+++F  M    + P++ TY +L+ G  YA  G     
Sbjct: 114 EPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQG--YATKGALVEM 171

Query: 68  --------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDE 95
                                            EA  +F +M  +GL  + VT+  ++D 
Sbjct: 172 HGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDV 231

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           LCK+ ++++A    + MI  G+RPD+      + Y  LI  LC   K + A EL   +  
Sbjct: 232 LCKSGRVEDAMLYFEQMIDEGLRPDS------IVYNSLIHSLCIFDKWEKAEELFLEMLD 285

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
            G+  + + +N  I + C + ++ ++  LF  M   GV P+ +
Sbjct: 286 RGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPDII 328



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+++ YN++I  LC     +KA+ELFL+M D  I  + + +NS+I   C      E+  
Sbjct: 254 RPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVK 313

Query: 73  LFIEMMDRGLQSDVVTFN 90
           LF  M+  G++ D++T  
Sbjct: 314 LFDLMVRIGVKPDIITLG 331


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/214 (37%), Positives = 118/214 (55%), Gaps = 6/214 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y+ +I+G CK   +D+A EL  +M  + I PNVVTY+SLI G C +   + A  L
Sbjct: 245 PDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM DRG   ++VT++ I+D LCKN ++D A  LL  M   G++P      N+  Y  L
Sbjct: 305 VDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQP------NMYTYTIL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ GKL++AR++ + L   G   NV TY + I   C+    D+A  L   ME  G 
Sbjct: 359 IKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGC 418

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            PN   +  ++ S  +K+E     +LL  M + N
Sbjct: 419 IPNAKTYEIIILSLFKKDENEMAEKLLCEMIETN 452



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+  ++DG CKEG V +AK +   M  + I P VVTYNSL+ G+      N+A+ +
Sbjct: 175 PDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSI 234

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G+  D+ +++++++  CK + MDEA  LL  M    + P      N+V Y  L
Sbjct: 235 FNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIP------NVVTYSSL 288

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK GK+  A +L   +   G  PN+VTY+  + ALC + Q+D A  L   M+ +G+
Sbjct: 289 IDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGI 348

Query: 194 APNCVIFTTLMPSFIRKN---ETSKVIE-LLRSMDKRNVMPYASILSIIVD 240
            PN   +T L+    +     +  KV E LL      NV  Y  ++    D
Sbjct: 349 QPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCD 399



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  VTYN+++DG      V+KAK +F  M    ++P++ +Y+ LI+GFC     +EA  
Sbjct: 209 KPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  + +  +VVT++ ++D LCK+ K+  A +L+D M   G  P      NIV Y  
Sbjct: 269 LLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPP------NIVTYSS 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D LCK  ++ NA  L   +   G+ PN+ TY I I  LC   +++ A  +F D+ VKG
Sbjct: 323 ILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              N   +T ++  F  K    + + LL  M+    +P A    II+  L K +
Sbjct: 383 HNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKD 436



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 126/257 (49%), Gaps = 16/257 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY--------- 63
           KPN V  N +I+  C+ G +  A  +  ++      PN +T N+LI G C          
Sbjct: 94  KPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHC 153

Query: 64  -ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 +A  LF +M+   +  DV TF +++D  CK  ++ EA  +L +M+  G++P   
Sbjct: 154 IVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKP--- 210

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
               +V Y  L+DG   + ++  A+ +  ++ + G+ P++ +Y+I I+  C  + MD+A 
Sbjct: 211 ---GVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAM 267

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +L  +M  K + PN V +++L+    +  + S  ++L+  M  R   P     S I+D L
Sbjct: 268 ELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL 327

Query: 243 VKNEISLNSIPQFNRQK 259
            KN    N+I    + K
Sbjct: 328 CKNHQVDNAIALLTQMK 344



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 16/242 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N I+  L K         L  +M+   I PN+V  N LI+ FC       A  +
Sbjct: 60  PPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSV 119

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKN----------RKMDEATRLLDLMIQGGVRPDAFC 123
             +++  G + + +T N ++  LC N           K+ +A  L + MI   + PD + 
Sbjct: 120 LTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVY- 178

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                 +  L+DG CK G++K A+ +   +   G+ P VVTYN  +      +Q++KA  
Sbjct: 179 -----TFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKS 233

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +F  M   GV+P+   ++ L+  F +     + +ELL+ M  + ++P     S ++D L 
Sbjct: 234 IFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLC 293

Query: 244 KN 245
           K+
Sbjct: 294 KS 295



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 105/217 (48%), Gaps = 4/217 (1%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           VD A  LF ++  +N  P  + +N ++     +   +   YL  +M  RG++ ++V  N+
Sbjct: 43  VDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL----IDGLCKIGKLKNAR 147
           +++  C+   +  A  +L  +++ G +P+      ++   CL     D  C +GKLK+A 
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           +L   +    + P+V T+ I +   C + ++ +A ++   M ++G+ P  V + +LM  +
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGY 222

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
               + +K   +  +M +  V P     SI+++   K
Sbjct: 223 FLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCK 259



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 56/102 (54%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY  +I GLC+ G ++ A+++F  +  +  N NV TY  +I GFC     +EA  
Sbjct: 349 QPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALT 408

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           L  +M D G   +  T+ +I+  L K  + + A +LL  MI+
Sbjct: 409 LLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIE 450



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TY  +I G C +G  D+A  L  +M+D    PN  TY  +I      ++   AE L 
Sbjct: 386 NVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLL 445

Query: 75  IEMMDRGLQSDVVTFN 90
            EM++      V   N
Sbjct: 446 CEMIETNFDGRVALTN 461


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 6/212 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+VT  T++DGLCK+G +D+A EL   MK +  + +VV Y +LI GFC   + +  +
Sbjct: 64  CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 123

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ +G+ ++VVT++ ++  LC+  +  EA  +L+ M + G+ PD      +V Y 
Sbjct: 124 ELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPD------VVTYT 177

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK G+  +A +L   +   G  P+ VTYN+ +  LC +  +  A  +   M  K
Sbjct: 178 GLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK 237

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G   + V + TLM     K +  + ++L  SM
Sbjct: 238 GKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 269



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++ GLC+ G V +A  L  +M  ++++P++V+YN+LI+G C A    EA  L +EM  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G   + VT   +MD LCK+ +MDEA  LL+ M + G   D      +V YG LI G C 
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDAD------VVLYGTLISGFCN 115

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G L   +EL   +   G+  NVVTY+  +H LC   Q  +A+ +   M   G+ P+ V 
Sbjct: 116 NGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVT 175

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +T L+    +    +  ++LL  M ++   P     ++++  L K  + +++ 
Sbjct: 176 YTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAF 228



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT+I+GLCK   + +A  L L+M+     PN VT  +L+ G C     +EA  L
Sbjct: 31  PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMEL 90

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  +G  +DVV +  ++   C N  +D    L D M+  G+        N+V Y CL
Sbjct: 91  LEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA------NVVTYSCL 144

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC++G+ K A  +  ++   G+ P+VVTY   I  LC D +   A DL   M  KG 
Sbjct: 145 VHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGE 204

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM----DKRNVMPYASILSIIVD 240
            P+ V +  L+    ++       ++LR M     K +V+ Y +++  + D
Sbjct: 205 EPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCD 255



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 126/262 (48%), Gaps = 31/262 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            + V Y T+I G C  G +D+ KELF +M  + I+ NVVTY+ L+HG C      EA  +
Sbjct: 101 ADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTV 160

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-------------- 119
              M + G+  DVVT+  ++D LCK+ +   A  LL+LM++ G  P              
Sbjct: 161 LNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCK 220

Query: 120 -----DAFC----------EINIVAYGCLIDGLCKIGKLKNARELSQSL--TRAGLMPNV 162
                DAF           + ++V Y  L+ GLC  GK+  A +L  S+      L PNV
Sbjct: 221 EGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNV 280

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            T+N+ I  LC + ++ KA  +   M  KG   N V +  L+   ++  +  + +EL + 
Sbjct: 281 FTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQ 340

Query: 223 MDKRNVMPYASILSIIVDLLVK 244
           +     +P +   SI++D   K
Sbjct: 341 VLDLGFVPNSFTYSILIDGFCK 362



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTYN ++ G  K G + +A EL+ Q+ D    PN  TY+ LI GFC     N A+ LF
Sbjct: 314 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 373

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM   GL   +  +N +M  LCK   +++A  L   M       +A CE +I+++  +I
Sbjct: 374 CEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEM------GNANCEPDIISFNTMI 427

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G  +  +EL   +   GL P+ +T++  I+ L    ++D+A      M   G  
Sbjct: 428 DGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFT 487

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           P+ +++ +L+     K +T+++I LL  M  +  +    I+S I+  L
Sbjct: 488 PDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCL 535



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 6/207 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+ TY+ +IDG CK   ++ AK LF +M+   +NP +  YN+L+   C      +A+ L
Sbjct: 348 PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSL 407

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM +   + D+++FN ++D   K         L   M++ G+RPDA      + +  L
Sbjct: 408 FQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDA------LTFSTL 461

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ L K+G+L  A+   + +  +G  P+ + Y+  +  L +     +  +L   M  KG 
Sbjct: 462 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 521

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELL 220
             +  I +T++       +   V+ELL
Sbjct: 522 VLDRKIVSTILTCLCHSIQEVDVMELL 548



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 6/202 (2%)

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           N ++ G C      EA  L  EM  + +  D+V++N +++ LCK +K+ EA  LL  M  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            G  P      N V    L+DGLCK G++  A EL +++ + G   +VV Y   I   CN
Sbjct: 62  AGCFP------NSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCN 115

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
           +  +D+  +LF +M  KG++ N V ++ L+    R  +  +   +L +M +  + P    
Sbjct: 116 NGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVT 175

Query: 235 LSIIVDLLVKNEISLNSIPQFN 256
            + ++D L K+  + +++   N
Sbjct: 176 YTGLIDGLCKDGRATHAMDLLN 197



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ +++NT+IDG  K G     KEL ++M +  + P+ +T+++LI+      + +EA+
Sbjct: 416 CEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAK 475

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
                M+  G   D + ++ ++  L       E   LL  M   G   D
Sbjct: 476 SALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLD 524



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T++T+I+ L K G +D+AK    +M      P+ + Y+SL+ G     D  E   
Sbjct: 452 RPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 511

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           L  +M  +G   D    + I+  LC + +  +   LL    QG
Sbjct: 512 LLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQG 554


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 123/239 (51%), Gaps = 6/239 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           + +G  C PN V YNT+IDG CK+G  ++A  LF ++K +   P V TY ++I+GFC   
Sbjct: 197 KRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKG 256

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
                + L +EM +RGL   +  +N I+D   K+    EA   +  MI+ G  PD     
Sbjct: 257 KFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPD----- 311

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +  Y  LI G C  G++  A +L +   + GL+PN V+Y   IH  C   +  +A DL 
Sbjct: 312 -MATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLL 370

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + M  +G  P+ V +  L+   I   E    + +   M ++ V+P A+I ++++  L K
Sbjct: 371 IKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCK 429



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 10/240 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+     T++DG  + G  ++AK+LF    ++ I+P VV YN++I G+C      +A   
Sbjct: 450 PDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLC 509

Query: 74  FIEMMDRGLQS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F  M+ +GL S D  T++ I+D   K   +  A R+  LM++G  +P      N+V Y  
Sbjct: 510 FKRMI-QGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKP------NVVTYTL 562

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C  G +  A +  + +    L PNVVTY I I   C    + KA   F  M ++ 
Sbjct: 563 LINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEK 622

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             PN V +  LM      N    VI   RS    N +   S   +I D   +   S NSI
Sbjct: 623 CLPNDVTYNYLMNGLT--NNVDFVISNQRSEQTENSLVLESFGMMISDGWDRRAASYNSI 680



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V+Y  +I   CK+G   +A +L ++M +    P++VTY +LIHG   A + + A  +
Sbjct: 345 PNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTV 404

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+++G+  D   +NV+M  LCK  ++  A  LL  M+   V PDAF    I A   L
Sbjct: 405 RNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAF----ITA--TL 458

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  + G  + A++L +     G+ P VV YN  I   C    M  A   F  M ++G+
Sbjct: 459 VDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRM-IQGL 517

Query: 194 -APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +P+   ++T++  +I+ N+    + +   M K    P     +++++
Sbjct: 518 HSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLIN 565



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 104/253 (41%), Gaps = 41/253 (16%)

Query: 13  KPNTVT-----------------------------------YNTIIDGLCKEGFVDKAKE 37
           KP+ VT                                   YN ++ GLCK+G +  AK 
Sbjct: 379 KPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKV 438

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           L  +M D+N+ P+     +L+ GF    D  EA+ LF   +++G+   VV +N ++   C
Sbjct: 439 LLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYC 498

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K   M +A      MIQG   PD F       Y  +IDG  K+  L  A  +   + +  
Sbjct: 499 KFGMMKDALLCFKRMIQGLHSPDEF------TYSTIIDGYIKMNDLHGALRMFGLMVKGA 552

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
             PNVVTY + I+  C    +++A   F  M    + PN V +T L+  F +    +K  
Sbjct: 553 CKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKAC 612

Query: 218 ELLRSMDKRNVMP 230
                M     +P
Sbjct: 613 SFFEQMLMEKCLP 625



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 116/274 (42%), Gaps = 42/274 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  + N++++ L K G V+ A +++ +M D N   +  T   ++ G C      +  
Sbjct: 133 CVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGW 192

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +   RG   ++V +N ++D  CK    + A  L   +   G  P       +  YG
Sbjct: 193 KLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLP------TVKTYG 246

Query: 132 CLIDGLCKIGKLK-----------------------------------NARELSQSLTRA 156
            +I+G CK GK +                                    A +    + ++
Sbjct: 247 AIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKS 306

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P++ TYNI I   C+  ++ KA  L      +G+ PN V +T L+ ++ ++ E  + 
Sbjct: 307 GCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRA 366

Query: 217 IELLRSMDKRNVMP-YASILSIIVDLLVKNEISL 249
           ++LL  M +R   P   +  ++I  L+V  E+ +
Sbjct: 367 LDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDV 400



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 20/233 (8%)

Query: 6   REFGVV----CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           R FG++    CKPN VTY  +I+G C  G +++A++ F QM    + PNVVTY  LI  F
Sbjct: 543 RMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCF 602

Query: 62  CYANDGNEAEYLFIEM-MDRGLQSDVVTFNVIMDELC-------KNRKMDEATRLLDLMI 113
           C   +  +A   F +M M++ L +D VT+N +M+ L         N++ ++    L L  
Sbjct: 603 CKGVNLTKACSFFEQMLMEKCLPND-VTYNYLMNGLTNNVDFVISNQRSEQTENSLVLES 661

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
            G +  D + +    +Y  ++  LC+   +K+A  L   +   G +P+ V+    +H LC
Sbjct: 662 FGMMISDGW-DRRAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALLHGLC 720

Query: 174 NDEQMDKAHDLF---LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            + +    +++    L+     VA   V ++  + +F+ + +TS+   +L S+
Sbjct: 721 LEGRSQDWNNVISCKLNERELQVA---VKYSEKLDAFLSQGQTSEASLILHSL 770



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 97/228 (42%), Gaps = 27/228 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+TIIDG  K   +  A  +F  M      PNVVTY  LI+GFC + D N AE  
Sbjct: 520 PDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKT 579

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+   L+ +VVT+ +++   CK   + +A    + M+     P      N V Y  L
Sbjct: 580 FKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLP------NDVTYNYL 633

Query: 134 IDGLCK------IGKLKNARELSQSLTRAGLMPN------VVTYNITIHALCNDEQMDKA 181
           ++GL          +     E S  L   G+M +        +YN  +  LC  + +  A
Sbjct: 634 MNGLTNNVDFVISNQRSEQTENSLVLESFGMMISDGWDRRAASYNSILICLCQHKMVKHA 693

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             L   M  KG  P+ V    L+     +          RS D  NV+
Sbjct: 694 LHLRDKMMSKGFLPDPVSLVALLHGLCLEG---------RSQDWNNVI 732


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN ++DG+C EG VD A EL   +      P+ V YN+++ G C A    +A+
Sbjct: 233 CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDAD 292

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      +  TFNV++  LC+   + +A +LL+ M + G      C  NIV Y 
Sbjct: 293 ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG------CTANIVTYN 346

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GLC+   +  A  L   +   G  P++VTYN  +  LC+  Q   A +L  +M   
Sbjct: 347 AIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQN 406

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V F TL+    +K      IE+ + M  +   P +   S I+  L K
Sbjct: 407 GCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAK 459



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 113/231 (48%), Gaps = 15/231 (6%)

Query: 11  VCKP--NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
            C P    V Y  + DG C+ G +  A+ +   M    + PN  TYN LIH  C      
Sbjct: 128 ACGPAATVVAYGALTDGYCRAGRLGDARRVVGGMP---VQPNAYTYNPLIHTLCERGQVR 184

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +  +M+ RG   DVVT+N++++  CK R   +A  L+DLM   G      C  N V
Sbjct: 185 DALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG------CTPNNV 238

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG+C  G + +A EL ++L   G  P+ V YN  +  LC+ E+   A +L  +M
Sbjct: 239 TYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEM 298

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
             +   PN   F  ++ S  RK    + I+LL  M K     N++ Y +I+
Sbjct: 299 LRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAII 349



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 118/278 (42%), Gaps = 29/278 (10%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  +PN  TYN +I  LC+ G V  A  +   M      P+VVTYN L+   C      
Sbjct: 160 GMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYR 219

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF------ 122
           +A  L   M   G   + VT+NV+MD +C    +D+A  LL  +   G +P         
Sbjct: 220 QAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVL 279

Query: 123 -----------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
                                  C  N   +  +I  LC+ G L+ A +L + +++ G  
Sbjct: 280 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCT 339

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            N+VTYN  I+ LC    +D A  L   M+  G  P+ V + TL+       +     EL
Sbjct: 340 ANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEEL 399

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           + +M +   +P     + ++  L +  + +++I  F +
Sbjct: 400 MDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQ 437



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 16/238 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ VTYNT++ GLC       A+EL   M      P+ VT+N+LI   C      +A 
Sbjct: 373 CKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAI 432

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M D+G   + +T++ I+  L K  K+D+A  L + M   G  PD         Y 
Sbjct: 433 EVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-------YQ 485

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L + L     ++ A +  + L  +G+ P+ V YN  +  LC + + + A D+   M   
Sbjct: 486 LLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSS 545

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
           G  P+ + +  L+     +   ++  ELL  +  R+V+         V+ L+K+E  L
Sbjct: 546 GCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVL---------VNSLIKSEALL 594



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 12/156 (7%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D    N ++ +LC+  + D+A R++     G   P A     +VAYG L DG C+ G+L 
Sbjct: 102 DAALANRLVRDLCRRGRPDDAERVV-----GACGPAA----TVVAYGALTDGYCRAGRLG 152

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
           +AR +   +    + PN  TYN  IH LC   Q+  A  +  DM  +G AP+ V +  L+
Sbjct: 153 DARRVVGGMP---VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILL 209

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +  +     + +EL+  M      P     ++++D
Sbjct: 210 EATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMD 245


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 127/252 (50%), Gaps = 22/252 (8%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P+ VTY  ++    K   V +A ++F +M D    PN +TY++L+ G C A +  +
Sbjct: 519 VGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQK 578

Query: 70  AEYLFIEMMD-----------RGLQSD-----VVTFNVIMDELCKNRKMDEATRLLDLMI 113
           A  ++ +M+             G  +D     VVT+  ++D LCK  K+ +A  LLD+M 
Sbjct: 579 ACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMS 638

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             G      CE N + Y  LIDG CK+GKL NA+E+   +++ G +P V TY   I A+ 
Sbjct: 639 SNG------CEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMF 692

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            D ++D A  +   M      PN V +T ++    R  E  K ++LL  M+KR   P   
Sbjct: 693 KDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVV 752

Query: 234 ILSIIVDLLVKN 245
             + ++D L K+
Sbjct: 753 TYTSLIDGLGKS 764



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 115/242 (47%), Gaps = 30/242 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGLC+ G   KA +L   M+    NPNVVTY SLI G   +   + + 
Sbjct: 712 CTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSL 771

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM--------IQG------GV 117
            LF +M+ +G   + VT+ V+++  C    +DEA  LL  M        +QG      G 
Sbjct: 772 QLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGF 831

Query: 118 RPDAFCEINIV-------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV- 163
                  + ++              YG LID   K G+L+ A EL + +       N+  
Sbjct: 832 SKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITS 891

Query: 164 --TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
             TY   I ALC   Q++KA +L+ ++  KGV P    F  L+   I+ N+ ++ ++L  
Sbjct: 892 KDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCY 951

Query: 222 SM 223
           SM
Sbjct: 952 SM 953



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 112/248 (45%), Gaps = 22/248 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY+ +I  LC+   V+KA  LF +MK   + P+V TY  LI  FC      +A   
Sbjct: 453 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSW 512

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G    VVT+  ++    K +++ +A+ +   M+      DA C  N + Y  L
Sbjct: 513 FDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMV------DAGCAPNTITYSAL 566

Query: 134 IDGLCKIGKLKNARELSQSLTRA----------------GLMPNVVTYNITIHALCNDEQ 177
           +DGLCK G+ + A E+   +                    + PNVVTY   I  LC   +
Sbjct: 567 VDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHK 626

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +  A +L   M   G  PN +I+  L+  F +  +     E+   M K   +P     + 
Sbjct: 627 VVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTS 686

Query: 238 IVDLLVKN 245
           ++D + K+
Sbjct: 687 LIDAMFKD 694



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 114/274 (41%), Gaps = 47/274 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T++ G  K+  +   K +   M +E  NPN   +NSL+H +C A D   A 
Sbjct: 305 CIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAY 364

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNR------------------------------- 100
            L   M   G     V +N+ +  +C                                  
Sbjct: 365 KLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTA 424

Query: 101 ----------KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150
                     K D+A +++ LM++ G  PD         Y  +I  LC+  K++ A  L 
Sbjct: 425 NFARCLCGMGKFDKAFQIIKLMMRKGFVPDT------STYSKVITFLCEAMKVEKAFLLF 478

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           Q +   G++P+V TY I I + C    +++A   F +ME  G +P+ V +T L+ ++++ 
Sbjct: 479 QEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKT 538

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +  +  ++   M      P     S +VD L K
Sbjct: 539 KQVPQASDIFHRMVDAGCAPNTITYSALVDGLCK 572



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 12/225 (5%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCK------EGFVDKAKELFLQMKDENINPNVVTYNSLI 58
           NR  G  C P  V YN  I  +C          +  A++++ +M   +   N V   +  
Sbjct: 368 NRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFA 427

Query: 59  HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
              C     ++A  +   MM +G   D  T++ ++  LC+  K+++A  L   M   GV 
Sbjct: 428 RCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVI 487

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           PD +       Y  LID  CK+G ++ AR     +   G  P+VVTY   +HA    +Q+
Sbjct: 488 PDVY------TYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQV 541

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            +A D+F  M   G APN + ++ L+    +  E+ K  E+   M
Sbjct: 542 PQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKM 586



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 102/247 (41%), Gaps = 43/247 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFL------------------------------- 40
           C+PN + Y+ +IDG CK G +D A+E+F                                
Sbjct: 642 CEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAI 701

Query: 41  ----QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
               QM + +  PNVVTY ++I G C   +  +A  L   M  RG   +VVT+  ++D L
Sbjct: 702 KVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGL 761

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            K+ K+D + +L   MI  G  P      N V Y  LI+  C  G L  A  L   + + 
Sbjct: 762 GKSGKVDMSLQLFTQMITQGCAP------NYVTYRVLINHCCAAGLLDEAHSLLSEMKQT 815

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
                V  Y   +      ++   +  L  ++E  G+     ++  L+ SF +     K 
Sbjct: 816 YWPKYVQGYCSVVQGF--SKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKA 873

Query: 217 IELLRSM 223
           +EL + M
Sbjct: 874 LELHKEM 880



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 108/277 (38%), Gaps = 39/277 (14%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +TV    +I GL +    D+A     +M+  +  PNVVTY +L+ GF         + 
Sbjct: 271 KLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKR 330

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------ 120
           +   MM+ G   +   FN ++   C  R    A +LL+ M   G  P             
Sbjct: 331 IISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSIC 390

Query: 121 -----------------------AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
                                  + C +N V        LC +GK   A ++ + + R G
Sbjct: 391 SGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKG 450

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
            +P+  TY+  I  LC   +++KA  LF +M+  GV P+   +T L+ SF +     +  
Sbjct: 451 FVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQAR 510

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
                M+     P     + ++   +K +     +PQ
Sbjct: 511 SWFDEMESVGCSPSVVTYTALLHAYLKTK----QVPQ 543



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 92/218 (42%), Gaps = 42/218 (19%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY ++IDGL K G VD + +LF QM  +   PN VTY  LI+  C A   +EA 
Sbjct: 747 CNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAH 806

Query: 72  YLFIEMM---------------------------------DRGLQSDVVTFNVIMDELCK 98
            L  EM                                    G+ S    + +++D   K
Sbjct: 807 SLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSK 866

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVA---YGCLIDGLCKIGKLKNARELSQSLTR 155
             ++++A  L   M++          +NI +   Y  LI  LC   +L+ A EL   +TR
Sbjct: 867 AGRLEKALELHKEMME------VSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITR 920

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            G++P +  +   I  L    + ++A  L   M  +GV
Sbjct: 921 KGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGV 958



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 80/219 (36%), Gaps = 26/219 (11%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N I+   C+ G   KA E   ++KD    P+  TYN+L+     A   +    +  EM +
Sbjct: 176 NVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSE 235

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEA------------TRLLDLMIQGGVRPDAF----- 122
            G  +D  T       LCK  +  +A            T L   MI G +    F     
Sbjct: 236 LGFCTDKFTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAIS 295

Query: 123 ---------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
                    C  N+V Y  L+ G  K  +L   + +   +   G  PN   +N  +H+ C
Sbjct: 296 FLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYC 355

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           N      A+ L   M   G  P  V++   + S     E
Sbjct: 356 NARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEE 394


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNTI+D LCK+G +  A++L + MK   + PN  TYN L++G+C      EA 
Sbjct: 239 CSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAA 298

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M    L  DV T+N++++ LC   +++EA +L D M    + PD      +V+Y 
Sbjct: 299 NVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPD------VVSYN 352

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G  +  K+  A +L + ++  G+ PN VT+NI +   C + +MD A +    ME  
Sbjct: 353 TLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEES 412

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G +P+CV + TL+  + +     +    +  M ++N+   +  L+ I+  L + +
Sbjct: 413 GFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREK 467



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VT+N ++   CKEG +D A     +M++   +P+ VTYN+LI+G+C A +  EA  
Sbjct: 380 KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFR 439

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM  + ++ D VT N I+  LC+ +K++EA +LL    + G   D       V+YG 
Sbjct: 440 TMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDE------VSYGT 493

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K G +  A +L   +    ++P+ VTYN  I  LC   + ++A     ++   G
Sbjct: 494 LIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESG 553

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + T++  + R+ +  K  +    M + +  P
Sbjct: 554 LLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKP 591



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 9/235 (3%)

Query: 13  KPNTVTYNTIIDGLCK---EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           +PN +T NT+++ L +      V  ++E F       I PNV T+N +I+G+C  N   +
Sbjct: 167 RPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKD 226

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A      M       D VT+N I+D LCK  ++ +A  LL  M   G+ P      N   
Sbjct: 227 AVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLP------NRNT 280

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+ G CK+G LK A  + + +T+  L+P+V TYN+ I+ LCN+ ++++A  L  +ME
Sbjct: 281 YNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME 340

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + P+ V + TL+   +  ++ S+  +LL  M ++ V P A   +I+V    K
Sbjct: 341 NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCK 395



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 112/215 (52%), Gaps = 8/215 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V+Y T+I G  K+G VD+A +L+ +MK++ I P+ VTYN +I G C      +A     E
Sbjct: 489 VSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNE 548

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLID 135
           +++ GL  D  T+N I+   C+   +++A +  + M++   +PD F C I       L+ 
Sbjct: 549 LLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNI-------LLR 601

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLC  G L+ A +L  +    G   + VTYN  I +LC + ++D A +L  +ME K + P
Sbjct: 602 GLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGP 661

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +   +  ++ +        +  E +  M ++  +P
Sbjct: 662 DHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLP 696



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 6/186 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN II GLC+ G  ++A     ++ +  + P+  TYN+++HG+C   D  +A   
Sbjct: 521 PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQF 580

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++   + DV T N+++  LC    +++A +L +  +  G        I+ V Y  L
Sbjct: 581 HNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGK------AIDTVTYNTL 634

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LCK G+L +A  L   +    L P+  TYN  I AL +  ++ +A +    M  KG 
Sbjct: 635 ITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGN 694

Query: 194 APNCVI 199
            P+ V+
Sbjct: 695 LPDQVL 700



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 29/223 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYNTI+ G C+EG V+KA +   +M + +  P+V T N L+ G C      +A  L
Sbjct: 556 PDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKL 615

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F   + +G   D VT+N ++  LCK  ++D+A  LL  M +  + PD +       Y  +
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHY------TYNAI 669

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPN-----------------------VVTYNITIH 170
           I  L   G+++ A E    +   G +P+                        V Y+  I 
Sbjct: 670 ITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIK 729

Query: 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
            LC + +   A  +F + + KG+  +   +  LM   I++ ++
Sbjct: 730 ELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRRKS 772



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 17/170 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T N ++ GLC EG ++KA +LF     +    + VTYN+LI   C     ++A  
Sbjct: 590 KPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFN 649

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN------ 126
           L  EM ++ L  D  T+N I+  L  + ++ EA   +  M++ G  PD   +++      
Sbjct: 650 LLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVV 709

Query: 127 -----------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                       VAY   I  LC  GK K+A  +     + G+  +  TY
Sbjct: 710 TSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTY 759


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 121/210 (57%), Gaps = 15/210 (7%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           +GNR     C PN  TY  +I GLCK G V++A  LF +M +  + PNVVTY +LI G C
Sbjct: 239 DGNR-----CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQC 293

Query: 63  YANDGN-EAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             N+G+ +  +  + +M+  GL  +  TF+V++D LCK  K++EA   L  +++ GV+  
Sbjct: 294 --NEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVK-- 349

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
               +N V Y  LIDGLCK GK+  A EL Q +   G +P+  +Y+  I  LC  +++ +
Sbjct: 350 ----VNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQ 405

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           A  +  DM  KG+  + V +T ++   +R+
Sbjct: 406 ATLMLEDMMEKGIQASPVTYTIIIDELVRE 435



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YN +IDG C  G ++ A ++F  M     +PNV TY  LIHG C +     A  
Sbjct: 209 EPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMV 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M++ GL+ +VVT+  ++   C    +  A RLL LM   G+ P+ +       +  
Sbjct: 269 LFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDW------TFSV 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK  K++ A+    SL + G+  N V Y   I  LC   ++D A +L   M  +G
Sbjct: 323 LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+   +++L+    R+ + S+   +L  M ++ +       +II+D LV+
Sbjct: 383 FVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVR 434



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 128/244 (52%), Gaps = 7/244 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V Y ++IDGLCK G +D A EL  +M  E   P+  +Y+SLI G C     ++A  
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +MM++G+Q+  VT+ +I+DEL +    +   ++ D MI  G+ PD      IV Y  
Sbjct: 409 MLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPD------IVTYTV 462

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +   C+ G++++A  +   +   G+ PN+VTYN  I    N   + +A   F  M  KG
Sbjct: 463 FVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKG 522

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             PN   +T L+   ++K+ +   +++ +  D +++   ++   I+  +L+   +   S+
Sbjct: 523 WKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQE-SNYDEIVWKILIYGLLQKGSV 581

Query: 253 PQFN 256
            +F+
Sbjct: 582 AEFS 585



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T  Y T++ GLC+ G  ++A+ L  +       PN+V YN+LI G+C A +   A 
Sbjct: 173 CAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHAL 232

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M       +V T+  ++  LCK+ K++ A  L   M++ G+ P      N+V Y 
Sbjct: 233 KVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEP------NVVTYT 286

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C  G L+ A  L   +   GL+PN  T+++ I ALC  E++++A      +  K
Sbjct: 287 ALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKK 346

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           GV  N V++T+L+    +  +     EL++ M     +P A   S ++D L + +
Sbjct: 347 GVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQK 401



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C     TY  ++ GL   G V +A  +F+ M+ ++  P+   Y +++HG C A    EAE
Sbjct: 138 CLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAE 197

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  E M  G + ++V +N ++D  C   +M+ A ++ + M   G R    C  N+  Y 
Sbjct: 198 VLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM--DGNR----CSPNVRTYT 251

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCK GK++ A  L   +  AGL PNVVTY   I   CN+  +  A  L   ME  
Sbjct: 252 ELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETN 311

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN   F+ L+ +  ++ +  +    L S+ K+ V     + + ++D L K 
Sbjct: 312 GLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKT 365



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++  Y + + G C+ G +  A  +F+ M          TY +L+HG   A    EA  +
Sbjct: 105 PDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAV 164

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+ M       D   +  ++  LC+  + +EA  LL+  +  G  P      NIV Y  L
Sbjct: 165 FVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEP------NIVVYNAL 218

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  G++++A ++ + +      PNV TY   IH LC   ++++A  LF  M   G+
Sbjct: 219 IDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGL 278

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN V +T L+     +        LL  M+   ++P     S+++D L K E
Sbjct: 279 EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKRE 331


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 8/240 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GVV  P+  T+ T+I G CKEG + KA  LF  M  +NI P++VTYN LI GFC   +
Sbjct: 423 ERGVV--PDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTE 480

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A  L+ EM+ R +  + +++ ++++  C    + EA RL D MI+ G++P       
Sbjct: 481 MEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKP------T 534

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V    +I G C+ G L  A E    +   G+ P+ +TYN  I+     E MDKA  L  
Sbjct: 535 LVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLIN 594

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            ME KG+ P+ V +  ++  F R+    +   +LR M +R + P  S  + +++  V  +
Sbjct: 595 KMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQD 654



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V YNTI++GLCK+  +  A  LF +M +  + P+  T+ +LIHG C   +  +A 
Sbjct: 391 CALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKAL 450

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M  + ++ D+VT+N+++D  CK  +M++A  L + MI   + P      N ++Y 
Sbjct: 451 SLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFP------NHISYA 504

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++G C +G +  A  L   + R G+ P +VT N  I   C    + KA +    M  +
Sbjct: 505 ILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISE 564

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           GV P+ + + TL+  F++     K   L+  M+ + + P     ++I++
Sbjct: 565 GVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILN 613



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y  +I+G C+ G + +A E+  +M ++    +VV YN++++G C      +A  L
Sbjct: 358 PDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANAL 417

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM++RG+  D  TF  ++   CK   M +A  L  +M Q  ++PD      IV Y  L
Sbjct: 418 FDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPD------IVTYNIL 471

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +++ A EL   +    + PN ++Y I ++  CN   + +A  L+ +M  KG+
Sbjct: 472 IDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGI 531

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P  V   T++  + R  + SK  E L  M    V P +   + +++  VK E
Sbjct: 532 KPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGE 584



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TYN +I+GLCK+G   +AK +F +M    ++P+  TYN+L+   C  N+  EA+ 
Sbjct: 252 KPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKD 311

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M+ RG+  D+++F+ ++    +N  +D+A      M   G+ PD       V Y  
Sbjct: 312 IFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDN------VIYTI 365

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C+ G +  A E+   +   G   +VV YN  ++ LC  + +  A+ LF +M  +G
Sbjct: 366 LINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERG 425

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V P+   FTTL+    ++    K + L   M ++N+ P     +I++D   K
Sbjct: 426 VVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCK 477



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 10/227 (4%)

Query: 8   FGVVC----KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG++     KP+ VTYN +IDG CK   ++KA EL+ +M    I PN ++Y  L++G+C 
Sbjct: 453 FGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCN 512

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
               +EA  L+ EM+ +G++  +VT N ++   C++  + +A   L  MI  GV PD+  
Sbjct: 513 LGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDS-- 570

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
               + Y  LI+G  K   +  A  L   +   GL P+VVTYN+ ++  C   +M +A  
Sbjct: 571 ----ITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAEL 626

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +   M  +G+ P+   +TTL+  ++ ++   +       M +R  +P
Sbjct: 627 ILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVP 673



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N+++ GL K G+VD A E++ ++    I  NV T N +++  C  +  ++ +   I+M  
Sbjct: 154 NSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQ 213

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           +G+ +D+VT+N +++  C+   + EA  +++ M   G++P  F       Y  +I+GLCK
Sbjct: 214 KGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLF------TYNAVINGLCK 267

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G+   A+ +   +   GL P+  TYN  +   C +    +A D+F DM  +GV+P+ + 
Sbjct: 268 KGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLIS 327

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           F++L+    R     + +   R M    ++P   I +I+++   +N
Sbjct: 328 FSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRN 373



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 101/183 (55%), Gaps = 6/183 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN ++Y  +++G C  GFV +A  L+ +M  + I P +VT N++I G+C + D ++A+  
Sbjct: 498 PNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEF 557

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G+  D +T+N +++   K   MD+A  L++ M   G++PD      +V Y  +
Sbjct: 558 LGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPD------VVTYNVI 611

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G C+ G+++ A  + + +   G+ P+  TY   I+   + + + +A     +M  +G 
Sbjct: 612 LNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGF 671

Query: 194 APN 196
            P+
Sbjct: 672 VPD 674



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  VT NT+I G C+ G + KA E   +M  E + P+ +TYN+LI+GF      ++A +
Sbjct: 532 KPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFF 591

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M  +GLQ DVVT+NVI++  C+  +M EA  +L  MI+ G+ PD         Y  
Sbjct: 592 LINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDR------STYTT 645

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           LI+G      LK A      + + G +P+
Sbjct: 646 LINGYVSQDNLKEAFRFHDEMLQRGFVPD 674



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            C  + + ++ +I    +   +++  + F  ++ +    ++   NSL+ G       + A
Sbjct: 110 TCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLA 169

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             ++ E+   G++ +V T N++++ LCK+ K+D+    L  M Q G+  D      IV Y
Sbjct: 170 WEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFAD------IVTY 223

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI+  C+ G L  A E+  S++  GL P + TYN  I+ LC   +  +A  +F +M  
Sbjct: 224 NTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLS 283

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            G++P+   + TL+    R N   +  ++   M  R V P
Sbjct: 284 IGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSP 323



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D + F++++    + RK++E T    ++ + G        ++I A   L+ GL K+G + 
Sbjct: 114 DNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFL------VSINACNSLLGGLVKMGWVD 167

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            A E+   + R+G+  NV T NI ++ALC D ++D      +DME KG+  + V + TL+
Sbjct: 168 LAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLI 227

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
            ++ R+    +  E++ SM  + + P     + +++ L K    + +   FN
Sbjct: 228 NAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFN 279


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 113/215 (52%), Gaps = 8/215 (3%)

Query: 10  VVCKPNTVTYNTIIDGLCKE-GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           + CK   VTYNT+ID LCK+ G V  A +LF +++   + P +VTYNSLI GFC A   +
Sbjct: 307 IGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLS 366

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA   F EM  +    +V+T+++++D LCK R+M EA + L+ M   G  P       +V
Sbjct: 367 EAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTP------TVV 419

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            YG LI+G CK G+LK+A    + +  AG  PN V +N  I  LC  E+ +    L   M
Sbjct: 420 TYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHM 479

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             +G  P+ + +  L+      N       L   M
Sbjct: 480 HAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM 514



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 29/247 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY+ II+  CK   V++A E+F++M + N  PN VT+N+LI GFC A    +A  
Sbjct: 240 EPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIK 299

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR-KMDEATRLLDLMIQGGVRP---------DAF 122
           LF EM   G ++ +VT+N ++D LCK R  +  A  L + +   G+ P           F
Sbjct: 300 LFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGF 359

Query: 123 CEI-------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           C+                    N++ Y  LIDGLCK+ ++K A +  + +   G  P VV
Sbjct: 360 CDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVV 419

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   I+  C   ++  A   F  M++ G APN VIF TL+    +    +  + LL  M
Sbjct: 420 TYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHM 479

Query: 224 DKRNVMP 230
                 P
Sbjct: 480 HAEGCKP 486



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 9/174 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TY+ +IDGLCK   + +A +    MK     P VVTY  LI+GFC   +   A 
Sbjct: 379 CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSAL 438

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F +M   G   + V FN ++D LCK  + ++  RLL  M   G +PD      ++ Y 
Sbjct: 439 LFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPD------VITYN 492

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           CLI GLC   ++++A+ L   +  A   PNV T+N  I  LC  +++++A ++ 
Sbjct: 493 CLISGLCSANRVEDAQRLFDGMACA---PNVTTFNFLIRGLCAQKKVEEARNIL 543



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY----ANDGNE 69
           P + ++N ++ G    G V  A      M+  + +    TYN ++ G C+    AN   +
Sbjct: 100 PTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQ 159

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   F EM   G++ D+ ++++++  L  + +M EA  L   M          C  +I+ 
Sbjct: 160 AMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---------CSPDIMT 210

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+DG CKIG+   A+ L + + +AG  PNV TY+I I+  C  +++++A ++F+ M 
Sbjct: 211 YNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMI 270

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
                PN V F TL+  F +       I+L   M+K          + ++D L K    +
Sbjct: 271 ESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGV 330

Query: 250 -NSIPQFNR 257
             ++  FN+
Sbjct: 331 YTAVDLFNK 339



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 36/258 (13%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++ GL      D+A  LF ++      PN  TYN LI GFC     ++A  +F +M  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-------------------D 120
            GL  +  T N ++  LC+  +M  A +L   M  G   P                   D
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 121 AFCEINIV----------AYGCLIDGLC----KIGKLKNARELSQSLTRAGLMPNVVTYN 166
           A   +  +           Y  ++ GLC       +L+ A E  + +  +G+ P++ +Y+
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           I + AL +  +M +AH LF  M     +P+ + +  LM  + +  +T +   L++ + K 
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 237

Query: 227 NVMPYASILSIIVDLLVK 244
              P     SII++   K
Sbjct: 238 GYEPNVFTYSIIINCYCK 255



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNTV +NT+IDGLCK    +    L   M  E   P+V+TYN LI G C AN   +A+
Sbjct: 449 CAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQ 508

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
            LF  M       +V TFN ++  LC  +K++EA  +LD
Sbjct: 509 RLFDGM---ACAPNVTTFNFLIRGLCAQKKVEEARNILD 544



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 6/165 (3%)

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149
           N ++  L   RK D+A RL   ++ G   P+A        Y  LI G CK G++  A  +
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAH------TYNVLIRGFCKGGQMHQAVSV 54

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
              +  +GL+PN  T N  +  LC   QM  A  LF +M+     P       L+  F  
Sbjct: 55  FSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFM 114

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
                  +  L+ M K +        ++++  L     S N + Q
Sbjct: 115 AGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQ 159


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 22/227 (9%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH------------- 59
           KPN + YNT++ GLCK+G +++A+ L  +M  + I P++ TY+SLI+             
Sbjct: 194 KPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTS 253

Query: 60  ---GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
              GFC  N  +EA  LF  M++RG Q D++ +N++M+  C N K+ EA +L  +M++ G
Sbjct: 254 LLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERG 313

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
            +PD       + Y  L+ G C I K+  AR L   +   GL+P+V +YNI I   C  E
Sbjct: 314 EQPDT------ITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFE 367

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           ++ +A +L  DM +K + PN + + +++    +        +L+  M
Sbjct: 368 RVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEM 414



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 8/234 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + + YN +++G C    V +A++LF  M +    P+ +TY  L+HG+C  +  +EA  LF
Sbjct: 282 DIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLF 341

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M++RGL  DV ++N+++   CK  ++ EA  LL+ M    + P      NI+ Y  ++
Sbjct: 342 HGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVP------NIITYNSVV 395

Query: 135 DGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-KG 192
           DGLCK G + +A +L   +       P+V TYNI + +LC  E ++KA   F  +   + 
Sbjct: 396 DGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERS 455

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            APN   +  L+    +     + I L   M  +N++P     +I++D L   +
Sbjct: 456 FAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQ 509



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+TY  ++ G C    VD+A+ LF  M +  + P+V +YN LI G+C      EA  
Sbjct: 315 QPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMN 374

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M  + L  +++T+N ++D LCK+  + +A +L+D M      P      ++  Y  
Sbjct: 375 LLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPP-----DVTTYNI 429

Query: 133 LIDGLCKIGKLKNARELSQSLT-RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           L++ LC+I  ++ A    + L       PNV +YNI I   C + ++D+A +LF  M  K
Sbjct: 430 LLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFK 489

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + P+ V +  L+ +     +  K I LL  +  + + P     +I+++ L K
Sbjct: 490 NLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHK 542



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 9/210 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +  I+  + K  +   A +L+  M+ + + P  VT+N LI+ FC+    + A  +
Sbjct: 52  PSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNILINCFCHMGQMDFAFSV 111

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++  G + +VVTF  +M   C N KM +A  + D M+   +R D       V YG L
Sbjct: 112 MGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARRIRFDD------VLYGTL 165

Query: 134 IDGLC--KIGKLKNARELSQSLTRAGLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           I+GLC  KIGK + A +L Q +    L+ PN++ YN  +H LC D  +++A  L   M V
Sbjct: 166 INGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIV 225

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +G+ P+   +++L+    R  +  +V  LL
Sbjct: 226 QGIFPDIFTYSSLIYGLCRAGQRKEVTSLL 255



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 27/241 (11%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P TVT+N +I+  C  G +D A  +  ++      PNVVT+ +L+ GFC  +   
Sbjct: 84  GVV--PFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKML 141

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR--KMDEATRLLDLMIQGG-VRPDAFCEI 125
           +A Y++ EM+ R ++ D V +  +++ LCK++  K   A +LL  M +   V+P      
Sbjct: 142 DALYIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKP------ 195

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ-------- 177
           N++ Y  ++ GLCK G +  AR L   +   G+ P++ TY+  I+ LC   Q        
Sbjct: 196 NLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLL 255

Query: 178 --------MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
                   +D+A +LF  M  +G   + + +  LM  +   N+  +  +L   M +R   
Sbjct: 256 NGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQ 315

Query: 230 P 230
           P
Sbjct: 316 P 316



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 8/185 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEAEY 72
           PN +TYN+++DGLCK G +  A +L  +M       P+V TYN L+   C      +A  
Sbjct: 386 PNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIA 445

Query: 73  LFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            F  ++ +R    +V ++N+++   CKNR++DEA  L + M    + PD      IV Y 
Sbjct: 446 FFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPD------IVTYN 499

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D L    +L  A  L   +   G+ PN+ TYNI I+ L    +   A  + L + ++
Sbjct: 500 ILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISLYLSIR 559

Query: 192 GVAPN 196
           G  P+
Sbjct: 560 GYHPD 564



 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 9/161 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEAEY 72
           P+  TYN +++ LC+   V+KA   F  +  E +  PNV +YN LI G C     +EA  
Sbjct: 422 PDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAIN 481

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M  + L  D+VT+N+++D L   +++D+A  LL  ++  G+ P      N+  Y  
Sbjct: 482 LFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISP------NLRTYNI 535

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
           LI+GL K G+ K A+++S  L+  G  P+V TY   I+ LC
Sbjct: 536 LINGLHKGGRPKTAQKISLYLSIRGYHPDVKTY--IINELC 574



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +YN +I G CK   +D+A  LF  M  +N+ P++VTYN L+         ++A  L
Sbjct: 458 PNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIAL 517

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            ++++D+G+  ++ T+N++++ L K  +   A ++   +   G  PD    I        
Sbjct: 518 LVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTYI-------- 569

Query: 134 IDGLCKIG 141
           I+ LCK G
Sbjct: 570 INELCKGG 577



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 6/152 (3%)

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK   +D+A  L   M+     P      +IV +  ++  + K+     A +L   +   
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLP------SIVEFTKILGTIAKMRYYATAIDLYTLMEYK 83

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G++P  VT+NI I+  C+  QMD A  +   +   G  PN V FTTLM  F   ++    
Sbjct: 84  GVVPFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDA 143

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
           + +   M  R +     +   +++ L K++I 
Sbjct: 144 LYIYDEMVARRIRFDDVLYGTLINGLCKSKIG 175


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 123/218 (56%), Gaps = 7/218 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN++I+GLC  G +D+AK++   M  +   PN VTYN+L++G+C +   ++A  +
Sbjct: 281 PNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKI 340

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G+  D  T+N +    C+  + + A ++L  M+  GV PD      I  +  L
Sbjct: 341 LCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPD------IYTFNML 394

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLC+ GK++ A    + L ++  +  ++TYNI I  +C   +++ A  LF  + +KGV
Sbjct: 395 LDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGV 454

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN-VMP 230
           +P+ + +TT+M    RK    +  EL R M K + +MP
Sbjct: 455 SPDVITYTTMMIGLRRKRLWLEAHELYRKMKKDDGLMP 492



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  +PN V YNTIID LC+   VD A ++   M+   I P+V+TYNSLI    ++    
Sbjct: 171 GLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWG 230

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            +  +  +MM  G+  DV+TF+ ++D   K  ++ EA +  D MIQ  V P      NIV
Sbjct: 231 VSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDP------NIV 284

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI+GLC  G L  A+++   +   G  PN VTYN  ++  C  +++D A  +   M
Sbjct: 285 TYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVM 344

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              GV  +   + TL   + +  + +   ++L  M    V+P     ++++D L ++
Sbjct: 345 SHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEH 401



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 29/240 (12%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           +++T+ID  C+   +  A     +M      P++VT+ SL++GFC+ N   EA  L  ++
Sbjct: 110 SFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQI 169

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-------------- 123
           +  G + +VV +N I+D LC+NR++D A  +L+ M + G+RPD                 
Sbjct: 170 VGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKW 229

Query: 124 ---------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
                            +++ +  +ID   K G+L  A++    + +  + PN+VTYN  
Sbjct: 230 GVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSL 289

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I+ LC    +D+A  +   M  KG  PN V + TL+  + +       +++L  M    V
Sbjct: 290 INGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGV 349



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A  LF  M +    P++V ++ L+              LF  +   G+  D+ +F+ ++D
Sbjct: 57  ALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLID 116

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             C+  ++  A   L  M++ G  P      +IV +G L++G C + +++ A  L   + 
Sbjct: 117 CFCRCSRLSLALSCLGKMMKLGFEP------SIVTFGSLVNGFCHVNRIQEAMSLVDQIV 170

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
             G  PNVV YN  I +LC + Q+D A D+   ME  G+ P+ + + +L+       +  
Sbjct: 171 GLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWG 230

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
               +L  M +  + P     S ++D+  K    L +  Q++
Sbjct: 231 VSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYD 272



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V ++ ++  + K    +    LF  ++   I+ ++ ++++LI  FC  +  + A   
Sbjct: 71  PSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSC 130

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM  G +  +VTF  +++  C   ++ EA  L+D ++  G  P      N+V Y  +
Sbjct: 131 LGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEP------NVVIYNTI 184

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LC+  ++  A ++   + + G+ P+V+TYN  I  L +  +   +  +  DM   G+
Sbjct: 185 IDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGI 244

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ + F+ ++  F ++ +  +  +    M +R+V P
Sbjct: 245 HPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDP 281


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 6/247 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           + KP+T  YN +ID  CK+G +D A  L  +MK +NI P+++TY SLI G    +   + 
Sbjct: 208 ITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKV 267

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF+EM+   +  DV TFN ++D LCK  K+++A  ++  MI+ GV P      N + Y
Sbjct: 268 RTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEP------NEITY 321

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++DG C  G++  AR +  S+   G+ P++++Y   I+     ++MDKA  LF ++  
Sbjct: 322 NVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQ 381

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            G+ P+ V  + L+        T         M     +P       ++    KN +   
Sbjct: 382 NGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEE 441

Query: 251 SIPQFNR 257
           ++  F++
Sbjct: 442 AMSHFHK 448



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C+P+ V Y T++DGLCK+G   KA +L   M+     P+   YN +I  FC     + A
Sbjct: 173 ICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGA 232

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  EM  + +  D++T+  ++D L K  + ++   L   MI   + PD  C  N V  
Sbjct: 233 TSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDV-CTFNSV-- 289

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
              IDGLCK GK+++A E+   +   G+ PN +TYN+ +   C   QM +A  +F  M  
Sbjct: 290 ---IDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMID 346

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           KG+ P+ + +T L+  ++ K +  K ++L R + +  + P     S+++
Sbjct: 347 KGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLL 395



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 136/274 (49%), Gaps = 29/274 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TYN ++DG C  G + +A+ +F  M D+ I P++++Y +LI+G+      ++A  
Sbjct: 315 EPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQ 374

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC--------- 123
           LF E+   GL+  +VT +V++  L +  + + A    D M   G  P+ +          
Sbjct: 375 LFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYF 434

Query: 124 --------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                               + NI  Y  +I+GLCK GKL  A    + L   GL P+V+
Sbjct: 435 KNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVI 494

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   I   C +  +D+A D+   ME  G  P+   +  ++  F R ++ S++   L+ +
Sbjct: 495 TYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEI 554

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
             ++    A+ + +++D++ ++   LN IP+F+R
Sbjct: 555 AGKSFSFEAATVELLMDIIAEDPSLLNMIPEFHR 588



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           +T+++  C     D    +      + I  N VT+ +LI G    N   +A +LF +++ 
Sbjct: 111 STVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVR 170

Query: 80  RGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             + + D V +  +MD LCK     +A  LL LM QG  +PD  C  NIV     ID  C
Sbjct: 171 ENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDT-CIYNIV-----IDAFC 224

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G L  A  L   + +  + P+++TY   I  L    Q +K   LFL+M    + P+  
Sbjct: 225 KDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVC 284

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            F +++    ++ +     E++  M ++ V P     ++++D
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMD 326



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 106/231 (45%), Gaps = 5/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+++ ++  L           +F ++    I  +    +++++  C  +  +    +
Sbjct: 70  PSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALSTVVNSCCLMHRTDLGFSV 129

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
                 +G+  + VTF  ++  L    K+ +A  L   +++  +     CE + V YG +
Sbjct: 130 LAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENI-----CEPDEVMYGTV 184

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G  + A +L + + +    P+   YNI I A C D  +D A  L  +M+ K +
Sbjct: 185 MDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNI 244

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ + +T+L+    + ++  KV  L   M   N+ P     + ++D L K
Sbjct: 245 PPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCK 295



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 40/214 (18%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A  LF QM      P+ V+++ L+    +    +    +F E+    +  D    + 
Sbjct: 53  LDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALST 112

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C   + D    +L +  + G+        N V +  LI GL    K+K+A  L +
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGI------PYNEVTFTTLIRGLFAENKVKDAVHLFK 166

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            L R  +                                    P+ V++ T+M    +K 
Sbjct: 167 KLVRENI----------------------------------CEPDEVMYGTVMDGLCKKG 192

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            T K  +LLR M++    P   I +I++D   K+
Sbjct: 193 HTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKD 226


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 125/262 (47%), Gaps = 44/262 (16%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN  TY ++IDGL K G VDKA  LF +M  E +    V YNSLIHG   +   + A 
Sbjct: 190 CRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAA 249

Query: 72  YLFIEMMDRGLQSDVVTF-----------------------------------NVIMDEL 96
            LF EM+ +GLQ D VTF                                   NV++D L
Sbjct: 250 KLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTL 309

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK++++DEA  +   + + G+ PD +       +  L+DGLCK G++ +A  L   + RA
Sbjct: 310 CKSKRLDEAWEIFGELEEDGLVPDVY------TFNALMDGLCKSGRIHDAFILLGDMKRA 363

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+V  YN  I  L    ++++A  L L+M+  G  P+ V + TL+    +       
Sbjct: 364 GCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDA 423

Query: 217 IELLRSMDKR---NVMPYASIL 235
           + L   +  +   N + Y +IL
Sbjct: 424 LRLFEEISAKGFANTVTYNTIL 445



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TY+ +ID +CK G V+KA ++FL MK     PN+ TY S+I G   +   ++A 
Sbjct: 155 CSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAF 214

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +LF EM   GL +  V +N ++  L ++ + D A +L   M+  G++PD       V + 
Sbjct: 215 FLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDH------VTFT 268

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GL   G+   AR + Q     G   +V  YN+ I  LC  +++D+A ++F ++E  
Sbjct: 269 SLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEED 328

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ P+   F  LM    +         LL  M +    P  ++ + ++D L K+
Sbjct: 329 GLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKS 382



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 114/199 (57%), Gaps = 11/199 (5%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C  +   YN +ID LCK   +D+A E+F +++++ + P+V T+N+L+ G C +   ++
Sbjct: 293 VGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHD 352

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  +M   G   DV  +N ++D L K+ +++EA +LL  M   G  PD      +V 
Sbjct: 353 AFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPD------VVT 406

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LID  CK G++++A  L + ++  G   N VTYN  ++ LC   ++D+A+ LF  M+
Sbjct: 407 YNTLIDESCKGGRIEDALRLFEEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMK 465

Query: 190 ---VKGVA-PNCVIFTTLM 204
              V GV  P+ V +TTL+
Sbjct: 466 QETVDGVIDPDFVTYTTLL 484



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 115/238 (48%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C      YN++ID   K G+  KA  ++  M    + P+  T+N L++ F  A   +
Sbjct: 82  GHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVD 141

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
               LF EM ++    +V+T+++++D +CK   +++A ++   M   G RP      NI 
Sbjct: 142 SVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRP------NIF 195

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  +IDGL K G +  A  L + +T  GL+   V YN  IH L    + D A  LF +M
Sbjct: 196 TYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREM 255

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             KG+ P+ V FT+L+         S+   + +           ++ ++++D L K++
Sbjct: 256 LSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSK 313



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 7/225 (3%)

Query: 25  GLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS 84
           G    G ++K+ E   +M+          YNSLI  F  A    +A  ++  M   GL+ 
Sbjct: 63  GYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRP 122

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D  TFNV+M+   K +++D   +L + M       +  C  N++ Y  LID +CK G ++
Sbjct: 123 DTYTFNVLMNAFKKAKRVDSVWKLFEEM------QNQNCSPNVITYSILIDAVCKCGGVE 176

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            A ++   +   G  PN+ TY   I  L     +DKA  LF +M  +G+    V++ +L+
Sbjct: 177 KALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLI 236

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEIS 248
               R        +L R M  + + P + +  S++  L V    S
Sbjct: 237 HGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRAS 281



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N ++DGLCK G +  A  L   MK     P+V  YN+LI G   +    EA  L
Sbjct: 332 PDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQL 391

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM   G + DVVT+N ++DE CK  ++++A RL + +   G         N V Y  +
Sbjct: 392 LLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF-------ANTVTYNTI 444

Query: 134 IDGLCKIGKLKNAREL----SQSLTRAGLMPNVVTYNITIHA 171
           ++GLC  G++  A +L     Q      + P+ VTY   ++ 
Sbjct: 445 LNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNG 486


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 131/245 (53%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY+T ID  CKEG + +A + F+ M+   + PN  TY SLI   C A +  EA  
Sbjct: 357 KPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALK 416

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  E++  G++ +VVT+  ++D LC+  +M EA  +   M+  GV P      N   Y  
Sbjct: 417 LVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP------NQETYTA 470

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G  K  +++ A+++ + +    + P+++ Y   +  LCN+ ++++A  L  +++  G
Sbjct: 471 LVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESG 530

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +  N VI+TTLM ++ +  + ++ + LL  M    ++        ++D L K+ +   ++
Sbjct: 531 INTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAM 590

Query: 253 PQFNR 257
             F R
Sbjct: 591 HHFGR 595



 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 128/256 (50%), Gaps = 33/256 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  TYN +ID LCKEG ++ A+ LF QMK+    P++VTYNSLI G       +E   
Sbjct: 252 KRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECIC 311

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +F +M D     DV+T+N +++  CK  +M +A   L  M   G++P         DAFC
Sbjct: 312 IFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFC 371

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           +                     N   Y  LID  CK G L  A +L + + +AG+  NVV
Sbjct: 372 KEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVV 431

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   +  LC + +M +A ++F  M   GVAPN   +T L+  FI+  E     ++L+ M
Sbjct: 432 TYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 491

Query: 224 DKRNVMP----YASIL 235
            ++ + P    Y +IL
Sbjct: 492 KEKCIKPDLLLYGTIL 507



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 114/230 (49%), Gaps = 6/230 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P    ++ +   L + G +++A E FL+M+   + P   + N+L+H       G+ +
Sbjct: 180 VCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLS 239

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              F +M   G++  V T+N+++D LCK   ++ A  L   M + G  PD      IV Y
Sbjct: 240 RKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPD------IVTY 293

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDG  K+G L     + + +  A   P+V+TYN  I+  C  E+M KA +   +M+ 
Sbjct: 294 NSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKA 353

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ PN V ++T + +F ++    + I+    M +  + P     + ++D
Sbjct: 354 NGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 403



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V Y T++D   K G   +A  L  +M D  +    VTY +LI G C +    EA + F
Sbjct: 534 NAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHF 593

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M + GLQ +V  +  ++D LCKN   + A +L D M+  G+ PD       +AY  LI
Sbjct: 594 GRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDK------IAYTALI 647

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G L+ A  L   +   G+  ++  Y   I  L +  Q+ KA +L  +M  KGV 
Sbjct: 648 DGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVL 707

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           P+ V++  L+  +    +  + +EL   M KR ++
Sbjct: 708 PDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMI 742



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 53/104 (50%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + Y  +IDG  K G + +A  L  +M +  +  ++  Y +LI G  ++    +A  L
Sbjct: 638 PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNL 697

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
             EM+ +G+  D V +  ++ +     K+DEA  L + M + G+
Sbjct: 698 LDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R     C+P+ ++YN ++ G C  G +D A+ L   M  E   P+  TYN+LI G C   
Sbjct: 110 RRVLASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPME---PDTYTYNTLIRGLCGRG 166

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A  +  +M+ RG   DVVT+ ++++  CK     +A +LLD M   G  PD     
Sbjct: 167 RTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPD----- 221

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            IV Y  +++G+C+ G++ +A E  +SL   G  PN V+YNI +  LC  E+ + A  L 
Sbjct: 222 -IVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLM 280

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +M  KG  PN V F  L+    R+      +E+L  + K    P
Sbjct: 281 AEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTP 325



 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 64/296 (21%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN +++G+C+EG VD A E    +      PN V+YN ++ G C A    +AE
Sbjct: 218 CAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAE 277

Query: 72  YLFIEMMDRGLQSDVVTFNV-----------------------------------IMDEL 96
            L  EM  +G   +VVTFN+                                   I+   
Sbjct: 278 KLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAF 337

Query: 97  CKNRKMDEATRLLDLMIQGGVRPD---------AFC---EIN-----------------I 127
           CK +KMD A   ++LM+  G  PD         A C   E++                 +
Sbjct: 338 CKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVL 397

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           ++Y  +IDGL K GK + A EL   +   GL P+++TY+     LC + ++++A   F  
Sbjct: 398 ISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCK 457

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           ++  G+ PN V++  ++    ++  T   I+L   M     MP  S  +I+++ L 
Sbjct: 458 VQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLA 513



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 121/267 (45%), Gaps = 41/267 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T TYNT+I GLC  G  D A  +   M      P+VVTY  L+   C  +   +A  
Sbjct: 149 EPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVK 208

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM D+G   D+VT+NV+++ +C+  ++D+A   L  +      P   CE N V+Y  
Sbjct: 209 LLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSL------PSYGCEPNTVSYNI 262

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI----------------------- 169
           ++ GLC   + ++A +L   ++R G  PNVVT+N+ I                       
Sbjct: 263 VLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYG 322

Query: 170 ------------HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
                       HA C  ++MD+A      M   G  P+ V + TL+ +  R  E    +
Sbjct: 323 CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAV 382

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
           ELL  +  +   P     + ++D L K
Sbjct: 383 ELLHQLKDKGCTPVLISYNTVIDGLTK 409



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 6/182 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT++  LC+ G VD A EL  Q+KD+   P +++YN++I G   A    EA 
Sbjct: 358 CYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEAL 417

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +GLQ D++T++ I   LC+  +++EA +    +   G+RP      N V Y 
Sbjct: 418 ELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRP------NTVLYN 471

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLCK     +A +L   +   G MPN  TY I I  L  +  + +A ++  ++  +
Sbjct: 472 AILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSR 531

Query: 192 GV 193
           GV
Sbjct: 532 GV 533



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+++YN I+   CK+  +D+A      M      P++V+YN+L+   C   + + A 
Sbjct: 323 CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAV 382

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++ D+G    ++++N ++D L K  K +EA  LL+ M+  G++PD      I+ Y 
Sbjct: 383 ELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPD------IITYS 436

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +  GLC+ G+++ A +    +   G+ PN V YN  +  LC       A DLF  M   
Sbjct: 437 TISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSN 496

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  PN   +T L+     +    +  E++  +  R V+
Sbjct: 497 GCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVV 534



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 22/248 (8%)

Query: 5   NREFGVVCKPNTVTYNTIIDG-----LCKEGFVDKAKELFLQMKDENINPNVV-TYNSLI 58
           N  +     PN V + +         L + G +++A  L   M    + P+      +LI
Sbjct: 40  NLAYAGAVAPNAVPHRSAASNDRLRVLVRRGDLEEAIRLVESMA--GLEPSAAGPCAALI 97

Query: 59  HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
              C +    EA  +         + DV+++N ++   C   ++D A RL+  M    + 
Sbjct: 98  KKLCASGRTAEARRVLAS-----CEPDVMSYNAMVAGYCVTGQLDNARRLVAAM---PME 149

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           PD +       Y  LI GLC  G+  NA  +   + R G +P+VVTY I + A C     
Sbjct: 150 PDTY------TYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGY 203

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            +A  L  +M  KG AP+ V +  ++    ++      +E L+S+      P     +I+
Sbjct: 204 KQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIV 263

Query: 239 VDLLVKNE 246
           +  L   E
Sbjct: 264 LKGLCTAE 271


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 120/251 (47%), Gaps = 29/251 (11%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +P   TYN +ID +CKEG V+ A+ LF +MK   + P+ VTYNS+I GF      +
Sbjct: 123 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 182

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------- 119
           +    F EM D   + DV+T+N +++  CK  K+         M   G++P         
Sbjct: 183 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLV 242

Query: 120 DAFCE--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           DAFC+                     N   Y  LID  CKIG L +A  L   + + G+ 
Sbjct: 243 DAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVE 302

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            NVVTY   I  LC+ E+M +A +LF  M+  GV PN   +  L+  F++     + +EL
Sbjct: 303 WNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL 362

Query: 220 LRSMDKRNVMP 230
           L  +  R + P
Sbjct: 363 LNELKGRGIKP 373



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 131/245 (53%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V+Y+T++D  CKEG + +A + ++ M+   + PN  TY SLI   C   + ++A  
Sbjct: 232 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR 291

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+  G++ +VVT+  ++D LC   +M EA  L   M   GV P      N+ +Y  
Sbjct: 292 LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP------NLASYNA 345

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K   +  A EL   L   G+ P+++ Y   I  LC+ E+++ A  +  +M+  G
Sbjct: 346 LIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 405

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +  N +I+TTLM ++ +    ++ + LL  M + ++        +++D L KN++   ++
Sbjct: 406 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 465

Query: 253 PQFNR 257
             FNR
Sbjct: 466 DYFNR 470



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T + N ++    K G  D  K  F  M      P V TYN +I   C   D   A  L
Sbjct: 93  PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGL 152

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  D VT+N ++D   K  ++D+     + M       D  CE +++ Y  L
Sbjct: 153 FEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEM------KDMCCEPDVITYNAL 206

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CK GKL    E  + +   GL PNVV+Y+  + A C +  M +A   ++DM   G+
Sbjct: 207 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 266

Query: 194 APNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASILSIIVD 240
            PN   +T+L+ +  +    S       E+L+   + NV+ Y +++  + D
Sbjct: 267 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCD 317



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 125/266 (46%), Gaps = 34/266 (12%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           GN    V  + N VTY  +IDGLC    + +A+ELF +M    + PN+ +YN+LIHGF  
Sbjct: 293 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 352

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---- 119
           A + + A  L  E+  RG++ D++ +   +  LC   K++ A  +++ M + G++     
Sbjct: 353 AKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI 412

Query: 120 -----DAF--------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
                DA+                     E+ +V +  LIDGLCK   +  A +    ++
Sbjct: 413 YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRIS 472

Query: 155 RA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              GL  N   +   I  LC D Q++ A  LF  M  KG+ P+   +T+LM    ++   
Sbjct: 473 NDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNV 532

Query: 214 SKVIELLRSMD----KRNVMPYASIL 235
            + + L   M     K +++ Y S++
Sbjct: 533 LEALALRDKMAEIGMKLDLLAYTSLV 558



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 9/228 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  +E G+  K N++ Y T++D   K G   +   L  +MK+ +I   VVT+  LI G C
Sbjct: 399 NEMKECGI--KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC 456

Query: 63  YANDGNEAEYLFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
                ++A   F  +  D GLQ++   F  ++D LCK+ +++ AT L + M+Q G+ PD 
Sbjct: 457 KNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDR 516

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                  AY  L+DG  K G +  A  L   +   G+  +++ Y   +  L +  Q+ KA
Sbjct: 517 ------TAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 570

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
                +M  +G+ P+ V+  +++          + +EL   + K  ++
Sbjct: 571 RSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLL 618



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 91/242 (37%), Gaps = 41/242 (16%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P    ++ +   L   G +++A + F +MK   + P   + N L+H F         
Sbjct: 55  VCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFA-------- 106

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                                      K  K D+  R    MI  G RP  F       Y
Sbjct: 107 ---------------------------KLGKTDDVKRFFKDMIGAGARPTVF------TY 133

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +ID +CK G ++ AR L + +   GL+P+ VTYN  I       ++D     F +M+ 
Sbjct: 134 NIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKD 193

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
               P+ + +  L+  F +  +    +E  R M    + P     S +VD   K  +   
Sbjct: 194 MCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQ 253

Query: 251 SI 252
           +I
Sbjct: 254 AI 255



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG+  + N   +  +IDGLCK+  V+ A  LF QM  + + P+   Y SL+ G     +
Sbjct: 474 DFGL--QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGN 531

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA  L  +M + G++ D++ +  ++  L    ++ +A   L+ MI  G+ PD    I+
Sbjct: 532 VLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCIS 591

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGL--------MPNVVTYNITIHALCNDEQM 178
           +      +    ++G +  A EL   L +  L        +PN+ +    + +  ++EQ 
Sbjct: 592 V------LKKHYELGCIDEAVELQSYLMKHQLLTSDNDNALPNIYSDQNLVSSREHEEQE 645

Query: 179 DKAHDL 184
            +  +L
Sbjct: 646 TRISNL 651


>gi|413936133|gb|AFW70684.1| hypothetical protein ZEAMMB73_229858 [Zea mays]
          Length = 375

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTYN IID +C+EG VD+A+EL   +   +  PN V YN+++ GFC      +A 
Sbjct: 6   CEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIERWVDAN 65

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  E++      +  T NV ++ LC+   + + TR L+ M + G      C  N+V Y 
Sbjct: 66  EILDEVVSENCPPNEATLNVTINTLCRKGLLQKVTRYLEKMSKHG------CTTNVVTYN 119

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLC+ G + +A EL  ++   G  P++VTYN  +  LC+ ++ + A +L + M   
Sbjct: 120 AIIGGLCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQN 179

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
               +   F T++  + +K    + +E+ + M ++   P ++  S I+  LVK
Sbjct: 180 DRLRDNSTFNTIISFWCQKGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVK 232



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 113/241 (46%), Gaps = 18/241 (7%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           + FG  CKP+ VTYNT++ GLC     + A+EL ++M   +   +  T+N++I  +C   
Sbjct: 142 QSFG--CKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLRDNSTFNTIISFWCQKG 199

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  +F +M ++G   +  T++ I+  L K  KM++A  LL+ M   G   D     
Sbjct: 200 LILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKASKMEQALELLNEMANKGFNTDKM--- 256

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y  L   L K  K++   ++   L  +G+ P  V YN  +  LC + + + A D+ 
Sbjct: 257 ----YLVLTKSLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTNYAIDVL 312

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            DM   G  P+   +  L+     +    +  ELL  +  R+V+  +         L+KN
Sbjct: 313 ADMVSCGCMPDESTYIILIEGLFYEGYLKEARELLSRLCSRDVLSNS---------LIKN 363

Query: 246 E 246
           E
Sbjct: 364 E 364



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 6/216 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M+ E   PN VTYN +I   C   D ++A  L   +  R  + + V +N ++   C   +
Sbjct: 1   MRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIER 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
             +A  +LD ++     P      N       I+ LC+ G L+      + +++ G   N
Sbjct: 61  WVDANEILDEVVSENCPP------NEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTN 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTYN  I  LC    +D A +L  +M+  G  P+ V + T++      +      EL+ 
Sbjct: 115 VVTYNAIIGGLCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMI 174

Query: 222 SMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            M + + +   S  + I+    +  + L ++  F +
Sbjct: 175 KMSQNDRLRDNSTFNTIISFWCQKGLILQALEVFKQ 210


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 6/212 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+VT  T++DGLCK+G +D+A EL   MK +  + +VV Y +LI GFC   + +  +
Sbjct: 210 CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 269

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ +G+ ++VVT++ ++  LC+  +  EA  +L+ M + G+ PD      +V Y 
Sbjct: 270 ELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPD------VVTYT 323

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK G+  +A +L   +   G  P+ VTYN+ +  LC +  +  A  +   M  K
Sbjct: 324 GLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK 383

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G   + V + TLM     K +  + ++L  SM
Sbjct: 384 GKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 415



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 6/238 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N    N ++ GLC+ G V +A  L  +M  ++++P++V+YN+LI+G C A    EA  L 
Sbjct: 143 NVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLL 202

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           +EM   G   + VT   +MD LCK+ +MDEA  LL+ M + G   D      +V YG LI
Sbjct: 203 LEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDAD------VVLYGTLI 256

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C  G L   +EL   +   G+  NVVTY+  +H LC   Q  +A+ +   M   G+ 
Sbjct: 257 SGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIH 316

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           P+ V +T L+    +    +  ++LL  M ++   P     ++++  L K  + +++ 
Sbjct: 317 PDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAF 374



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT+I+GLCK   + +A  L L+M+     PN VT  +L+ G C     +EA  L
Sbjct: 177 PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMEL 236

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  +G  +DVV +  ++   C N  +D    L D M+  G+        N+V Y CL
Sbjct: 237 LEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA------NVVTYSCL 290

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC++G+ K A  +  ++   G+ P+VVTY   I  LC D +   A DL   M  KG 
Sbjct: 291 VHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGE 350

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM----DKRNVMPYASILSIIVD 240
            P+ V +  L+    ++       ++LR M     K +V+ Y +++  + D
Sbjct: 351 EPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCD 401



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 126/261 (48%), Gaps = 31/261 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V Y T+I G C  G +D+ KELF +M  + I+ NVVTY+ L+HG C      EA  + 
Sbjct: 248 DVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVL 307

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------------- 119
             M + G+  DVVT+  ++D LCK+ +   A  LL+LM++ G  P               
Sbjct: 308 NAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKE 367

Query: 120 ----DAFC----------EINIVAYGCLIDGLCKIGKLKNARELSQSL--TRAGLMPNVV 163
               DAF           + ++V Y  L+ GLC  GK+  A +L  S+      L PNV 
Sbjct: 368 GLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVF 427

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T+N+ I  LC + ++ KA  +   M  KG   N V +  L+   ++  +  + +EL + +
Sbjct: 428 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 487

Query: 224 DKRNVMPYASILSIIVDLLVK 244
                +P +   SI++D   K
Sbjct: 488 LDLGFVPNSFTYSILIDGFCK 508



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTYN ++ G  K G + +A EL+ Q+ D    PN  TY+ LI GFC     N A+ LF
Sbjct: 460 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 519

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM   GL   +  +N +M  LCK   +++A  L   M       +A CE +I+++  +I
Sbjct: 520 CEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEM------GNANCEPDIISFNTMI 573

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G  +  +EL   +   GL P+ +T++  I+ L    ++D+A      M   G  
Sbjct: 574 DGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFT 633

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           P+ +++ +L+     K +T+++I LL  M  +  +    I+S I+  L
Sbjct: 634 PDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCL 681



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 6/207 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+ TY+ +IDG CK   ++ AK LF +M+   +NP +  YN+L+   C      +A+ L
Sbjct: 494 PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSL 553

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM +   + D+++FN ++D   K         L   M++ G+RPDA      + +  L
Sbjct: 554 FQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDA------LTFSTL 607

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ L K+G+L  A+   + +  +G  P+ + Y+  +  L +     +  +L   M  KG 
Sbjct: 608 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 667

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELL 220
             +  I +T++       +   V+ELL
Sbjct: 668 VLDRKIVSTILTCLCHSIQEVDVMELL 694



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 6/207 (2%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           NV   N ++ G C      EA  L  EM  + +  D+V++N +++ LCK +K+ EA  LL
Sbjct: 143 NVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLL 202

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
             M   G  P      N V    L+DGLCK G++  A EL +++ + G   +VV Y   I
Sbjct: 203 LEMEAAGCFP------NSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLI 256

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              CN+  +D+  +LF +M  KG++ N V ++ L+    R  +  +   +L +M +  + 
Sbjct: 257 SGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIH 316

Query: 230 PYASILSIIVDLLVKNEISLNSIPQFN 256
           P     + ++D L K+  + +++   N
Sbjct: 317 PDVVTYTGLIDGLCKDGRATHAMDLLN 343



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 10/207 (4%)

Query: 34  KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           +A  LF    D N+ P+  T N L+     + +   A  ++  M    +     + + ++
Sbjct: 57  EAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALI 116

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
           +     +K      ++ L+++ G   + F  +NIV     + GLC+ G +  A  L + +
Sbjct: 117 ECFADAQKPQLGFGVVGLVLKRGFTVNVFI-MNIV-----LKGLCRNGGVFEAMGLIREM 170

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
            R  + P++V+YN  I+ LC  +++ +A  L L+ME  G  PN V  TTLM    +    
Sbjct: 171 GRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRM 230

Query: 214 SKVIELLRSMDKR----NVMPYASILS 236
            + +ELL +M K+    +V+ Y +++S
Sbjct: 231 DEAMELLEAMKKKGFDADVVLYGTLIS 257



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ +++NT+IDG  K G     KEL ++M +  + P+ +T+++LI+      + +EA+
Sbjct: 562 CEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAK 621

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
                M+  G   D + ++ ++  L       E   LL  M   G   D
Sbjct: 622 SALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLD 670



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T++T+I+ L K G +D+AK    +M      P+ + Y+SL+ G     D  E   
Sbjct: 598 RPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 657

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           L  +M  +G   D    + I+  LC + +  +   LL    QG
Sbjct: 658 LLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQG 700



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA  LF   +D  L     T N ++D L ++R    A  +   M    V P      + 
Sbjct: 56  TEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLP------SF 109

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            +   LI+      K +    +   + + G   NV   NI +  LC +  + +A  L  +
Sbjct: 110 GSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIRE 169

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           M  K V+P+ V + TL+    +  +  + + LL  M+     P +   + ++D L K+
Sbjct: 170 MGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKD 227


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 123/231 (53%), Gaps = 13/231 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+NT+IDG CK G VD A  L  +MK E + P+++T+NSL+ G C A    EA  +
Sbjct: 134 PNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCM 193

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL---MIQGGVRPDAF-CEINIVA 129
             E+   G   D  T+++I D L K+   D A   LDL    I  GV+ D + C I    
Sbjct: 194 LNEIKCNGFVPDGFTYSIIFDGLLKSD--DGAGAALDLYREAIGKGVKIDNYTCSI---- 247

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
              L++GLCK GK++ A E+ +SL   GL+P  V YN  ++  C    MD+A      ME
Sbjct: 248 ---LLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQME 304

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +G+ PNC+ F +++  F       K  E ++ M  + + P     +I++D
Sbjct: 305 SRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILID 355



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 6/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + +N++ID  C+   +DKA+E   +M  + I P+V TYN LI G+      +    
Sbjct: 309 RPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQ 368

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM + G + +V+++  +++ LCK+ K+ EA  +L  M+  GV P+A    NI  Y  
Sbjct: 369 ILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNA----NI--YNM 422

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C +GKL+ A      +++ G+   +VTYN  I  LC   ++ +A ++F  +   G
Sbjct: 423 LIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTG 482

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             P+ + + +L+  +     + K +EL  +M K  + P  +    ++    K  I L
Sbjct: 483 HCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKL 539



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN ++Y ++I+ LCK+G + +A+ +   M    + PN   YN LI G C      EA  
Sbjct: 379 KPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALR 438

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM   G+ + +VT+N ++  LCK  K+ EA  +  L+   G  PD      ++ Y  
Sbjct: 439 FFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPD------VITYNS 492

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G    G  +   EL +++ + GL P + T++  I   C+ E +     LF +M    
Sbjct: 493 LISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISG-CSKEGIKLKETLFNEMLQMN 551

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++P+ V++  ++  +       K   L + M    V P
Sbjct: 552 LSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRP 589



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 7/218 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTYN++I GLCK G + +A+E+F  +      P+V+TYNSLI G+  A +  +   L+  
Sbjct: 453 VTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYET 512

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   GL+  + TF+ ++   C    +     L + M+Q  + PD       V Y  +I  
Sbjct: 513 MKKLGLKPTINTFHPLISG-CSKEGIKLKETLFNEMLQMNLSPDR------VVYNAMIHC 565

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
             + G ++ A  L + +   G+ P+  TYN  I     + ++ +  DL  DM+ KG+ P 
Sbjct: 566 YQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPE 625

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
              ++ L+       + +      R M +   +P   I
Sbjct: 626 ADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCI 663



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)

Query: 91  VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150
           +I++ L +++K D    L   M+  G RPD       + YG  +    K+G LK A EL 
Sbjct: 36  MIVESLVESKKFDNVLDLFKEMVGLGFRPDK------LVYGRAMLAAVKLGDLKLAMELF 89

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           +++ R  ++PNV  YN+ I  LC ++++  A  LF +M V+ + PN V F TL+  + + 
Sbjct: 90  ETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKA 149

Query: 211 NETSKVIELLRSMDKRNVMP----YASILS 236
            E    I L   M K  V P    + S+LS
Sbjct: 150 GEVDVAIGLRERMKKEKVEPSIITFNSLLS 179



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 13/184 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKE-LFLQMKDENINPNVVTYNSLIHGFCYANDGN--E 69
           KP   T++ +I G  KEG   K KE LF +M   N++P+ V YN++IH  CY   G+  +
Sbjct: 519 KPTINTFHPLISGCSKEGI--KLKETLFNEMLQMNLSPDRVVYNAMIH--CYQETGHVQK 574

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  EM+D G++ D  T+N ++    K  K+ E   L+D M   G+ P+A        
Sbjct: 575 AFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEA------DT 628

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI G C +     A    + +   G +PNV   N     L  D ++ +A  +  +M 
Sbjct: 629 YSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMI 688

Query: 190 VKGV 193
             G+
Sbjct: 689 ANGM 692



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 105/232 (45%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+      I++ L +    D   +LF +M      P+ + Y   +       D   A  L
Sbjct: 29  PSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMEL 88

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  R +  +V  +NV++  LCK +++ +A +L   M    + P      N V +  L
Sbjct: 89  FETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVP------NRVTFNTL 142

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G++  A  L + + +  + P+++T+N  +  LC   ++++A  +  +++  G 
Sbjct: 143 IDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGF 202

Query: 194 APNCVIFTTLMPSFIRKNE-TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   ++ +    ++ ++     ++L R    + V       SI+++ L K
Sbjct: 203 VPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCK 254



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 6/213 (2%)

Query: 34  KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           +  EL+  M+ E   P+      ++     +   +    LF EM+  G + D + +   M
Sbjct: 14  QVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAM 73

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
               K   +  A  L + M +  V P+ F       Y  LI GLCK  ++++A +L   +
Sbjct: 74  LAAVKLGDLKLAMELFETMKRRKVVPNVF------VYNVLIGGLCKEKRIRDAEKLFGEM 127

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
           +   L+PN VT+N  I   C   ++D A  L   M+ + V P+ + F +L+    +    
Sbjct: 128 SVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRI 187

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +   +L  +     +P     SII D L+K++
Sbjct: 188 EEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSD 220


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + + YNTI++GLCKE  +  A +LF +M +    P+  T+ +LIHG C   +  +A 
Sbjct: 324 CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKAL 383

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M  R ++ D+V +N ++D  CK  +M++A+ L D MI   + P      N + YG
Sbjct: 384 SLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFP------NHITYG 437

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+  C +G +  A  L   +   G+ P +VT N  I   C      KA +    M  K
Sbjct: 438 ILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAK 497

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           GVAP+ + + TL+  F+R++   K    +  M+K  ++P
Sbjct: 498 GVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLP 536



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 29/257 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYN II+GLCK+G   +AK + ++M +  ++P+  TYN+L+   C  ++ +EA+ 
Sbjct: 185 KPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKE 244

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           +F EM+ +G+  D+V+F+ ++    +NR +D+A      M + G+ PD            
Sbjct: 245 IFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC 304

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              C ++++AY  +++GLCK   L +A +L   +   G +P+  
Sbjct: 305 RNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFY 364

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T+   IH  C D  M KA  LF  M  + + P+ V + TL+  F +  E  K  EL   M
Sbjct: 365 TFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGM 424

Query: 224 DKRNVMPYASILSIIVD 240
             R + P      I+++
Sbjct: 425 ISRKIFPNHITYGILIN 441



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           ++FG+V  P+ V Y  ++ G C+ G + +A ++  +M ++    +V+ YN++++G C   
Sbjct: 285 KKFGLV--PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEK 342

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A+ LF EM++RG   D  TF  ++   C++  M +A  L   M Q  ++PD     
Sbjct: 343 MLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPD----- 397

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            IVAY  LIDG CK+G+++ A EL   +    + PN +TY I I+A C+   + +A  L+
Sbjct: 398 -IVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLW 456

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             M  KG+ P  V   T++  + R  ++SK  E L  M  + V P
Sbjct: 457 DVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAP 501



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 127/243 (52%), Gaps = 7/243 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+ T+I G C++G + KA  LF  M   NI P++V YN+LI GFC   +  +A  L
Sbjct: 361 PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASEL 420

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  M+ R +  + +T+ ++++  C    + EA RL D+MI+ G++P       +V    +
Sbjct: 421 WDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKP------TLVTCNTV 474

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G    A E    +   G+ P+ ++YN  I+    ++ MDKA      ME +G+
Sbjct: 475 IKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGL 534

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ + +  +M  F R+    +   +LR M ++ + P  S  + +++  V  + +LN   
Sbjct: 535 LPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQD-NLNEAF 593

Query: 254 QFN 256
           +F+
Sbjct: 594 RFH 596



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YNT+IDG CK G ++KA EL+  M    I PN +TY  LI+ +C     +EA  
Sbjct: 395 KPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFR 454

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+  M+++G++  +VT N ++   C++    +A   L  MI  GV PD       ++Y  
Sbjct: 455 LWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDH------ISYNT 508

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  +   +  A      + + GL+P+++TYN+ ++  C   +M +A  +   M  KG
Sbjct: 509 LINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKG 568

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T L+   + ++  ++       M +R   P
Sbjct: 569 INPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAP 606



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 10/226 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T N +++ LCK+G  D  K    +M+   I  ++VTYN+LI  +C      EA  + 
Sbjct: 117 NVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIM 176

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M D+GL+  + T+N I++ LCK  +   A  +L  M+  G+ PD         Y  L+
Sbjct: 177 NSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDT------TTYNTLL 230

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C+      A+E+   + R G++P++V+++  I     +  +D+A   F DM+  G+ 
Sbjct: 231 VESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLV 290

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
           P+ VI+T LM  + R     + +++   M ++    +V+ Y +IL+
Sbjct: 291 PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILN 336



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N+++ GL K  +V+ A E+  ++    I  NV T N +++  C     ++ +    EM  
Sbjct: 87  NSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEG 146

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G+ +D+VT+N ++   C+   ++EA  +++ M   G++P  F       Y  +I+GLCK
Sbjct: 147 NGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLF------TYNAIINGLCK 200

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G+   A+ +   +   GL P+  TYN  +   C  +   +A ++F +M  +GV P+ V 
Sbjct: 201 KGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVS 260

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           F++L+  F R     + +   R M K  ++P   I ++++    +N
Sbjct: 261 FSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRN 306



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 64/107 (59%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ ++YNT+I+G  +E  +DKA     +M+ E + P+++TYN +++GFC      EAE +
Sbjct: 501 PDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELV 560

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             +M+++G+  D  T+  +++       ++EA R  D M+Q G  PD
Sbjct: 561 LRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPD 607



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 24/206 (11%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN----------------- 99
           ++H F  +   ++A+ L + M+ R   S V     ++  +C N                 
Sbjct: 1   MVHVFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQ 60

Query: 100 -RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
            RK+ E T    ++   G        ++I A   L+ GL KI  ++ A E+ + + R+G+
Sbjct: 61  ARKLREGTEAFRILRSKGYL------VSINACNSLLGGLVKIDWVELAWEVHREVVRSGI 114

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
             NV T NI ++ALC D + D       +ME  G+  + V + TL+ ++ R+    +  E
Sbjct: 115 ELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFE 174

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           ++ SM  + + P     + I++ L K
Sbjct: 175 IMNSMADKGLKPSLFTYNAIINGLCK 200



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 46/74 (62%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +++G C++G + +A+ +  +M ++ INP+  TY +LI+G    ++ NEA   
Sbjct: 536 PDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRF 595

Query: 74  FIEMMDRGLQSDVV 87
             EM+ RG   D V
Sbjct: 596 HDEMLQRGFAPDDV 609


>gi|242049502|ref|XP_002462495.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
 gi|241925872|gb|EER99016.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
          Length = 294

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 117/211 (55%), Gaps = 25/211 (11%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G VC PN V Y+T+IDG  KEG V+KA +LF +M    I+PN+VTYNS++H  C A  
Sbjct: 3   ETGAVCSPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARA 62

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFN-------------------VIMDELCKNRKMDEATR 107
            + AE +   M+ +G++ D +T+N                    I++ LCK  ++ EA  
Sbjct: 63  VDRAEAILRPMVGKGVRPDRMTYNNLIYVDSSMGQWKEAVRSCSIINNLCKVGRVVEAQD 122

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           + DL +  GV P      N++ Y  L+DG C + K+K A ++  ++   G+ PNVVTY+ 
Sbjct: 123 IFDLTVSIGVHP------NVMVYNTLMDGYCLVHKMKKALKVFDAMVSVGIEPNVVTYST 176

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
            ++  C   ++++   LF +M  KG+ P+ +
Sbjct: 177 LVNGYCKIGRINEGLSLFTEMLHKGIEPSAI 207



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 13/198 (6%)

Query: 48  NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
           +PNVV Y+++I GF    + N+A  LF EM+ RG+  ++VT+N ++  LCK R +D A  
Sbjct: 9   SPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARAVDRAEA 68

Query: 108 LLDLMIQGGVRPDAFCEINIV------------AYGC-LIDGLCKIGKLKNARELSQSLT 154
           +L  M+  GVRPD     N++               C +I+ LCK+G++  A+++     
Sbjct: 69  ILRPMVGKGVRPDRMTYNNLIYVDSSMGQWKEAVRSCSIINNLCKVGRVVEAQDIFDLTV 128

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
             G+ PNV+ YN  +   C   +M KA  +F  M   G+ PN V ++TL+  + +    +
Sbjct: 129 SIGVHPNVMVYNTLMDGYCLVHKMKKALKVFDAMVSVGIEPNVVTYSTLVNGYCKIGRIN 188

Query: 215 KVIELLRSMDKRNVMPYA 232
           + + L   M  + + P A
Sbjct: 189 EGLSLFTEMLHKGIEPSA 206



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 18/176 (10%)

Query: 21  TIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80
           +II+ LCK G V +A+++F       ++PNV+ YN+L+ G+C  +   +A  +F  M+  
Sbjct: 106 SIINNLCKVGRVVEAQDIFDLTVSIGVHPNVMVYNTLMDGYCLVHKMKKALKVFDAMVSV 165

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G++ +VVT++ +++  CK  +++E   L   M+  G+ P A                  I
Sbjct: 166 GIEPNVVTYSTLVNGYCKIGRINEGLSLFTEMLHKGIEPSA------------------I 207

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            ++K A+ L  S++ +GL+P+VVTYN+ +  L  +  +++A  +F  ME  G  PN
Sbjct: 208 SRVKEAKGLFASISGSGLVPSVVTYNVMMTNLIKEGLVEEADRMFSFMENSGCDPN 263



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 23/131 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YNT++DG C    + KA ++F  M    I PNVVTY++L++G+C     NE   L
Sbjct: 134 PNVMVYNTLMDGYCLVHKMKKALKVFDAMVSVGIEPNVVTYSTLVNGYCKIGRINEGLSL 193

Query: 74  FIEMMDRGLQ-----------------------SDVVTFNVIMDELCKNRKMDEATRLLD 110
           F EM+ +G++                         VVT+NV+M  L K   ++EA R+  
Sbjct: 194 FTEMLHKGIEPSAISRVKEAKGLFASISGSGLVPSVVTYNVMMTNLIKEGLVEEADRMFS 253

Query: 111 LMIQGGVRPDA 121
            M   G  P++
Sbjct: 254 FMENSGCDPNS 264



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A C  N+VAY  +IDG  K G +  A +L   + + G+ PN+VTYN  +HALC    +D+
Sbjct: 6   AVCSPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARAVDR 65

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLM 204
           A  +   M  KGV P+ + +  L+
Sbjct: 66  AEAILRPMVGKGVRPDRMTYNNLI 89



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 27/176 (15%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           +VV ++ ++D   K   +++A  L + M+Q G+ P      N+V Y  ++  LCK   + 
Sbjct: 11  NVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISP------NLVTYNSVVHALCKARAVD 64

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHA-------------------LCNDEQMDKAHDLF 185
            A  + + +   G+ P+ +TYN  I+                    LC   ++ +A D+F
Sbjct: 65  RAEAILRPMVGKGVRPDRMTYNNLIYVDSSMGQWKEAVRSCSIINNLCKVGRVVEAQDIF 124

Query: 186 LDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            D+ V  GV PN +++ TLM  +   ++  K +++  +M    + P     S +V+
Sbjct: 125 -DLTVSIGVHPNVMVYNTLMDGYCLVHKMKKALKVFDAMVSVGIEPNVVTYSTLVN 179



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%)

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
           T A   PNVV Y+  I     +  ++KA DLF +M  +G++PN V + +++ +  +    
Sbjct: 4   TGAVCSPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARAV 63

Query: 214 SKVIELLRSMDKRNVMP 230
            +   +LR M  + V P
Sbjct: 64  DRAEAILRPMVGKGVRP 80


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 121/210 (57%), Gaps = 15/210 (7%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           +GNR     C PN  TY  +I GLCK G V++A  LF +M +  + PNVVTY +LI G C
Sbjct: 239 DGNR-----CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQC 293

Query: 63  YANDGN-EAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             N+G+ +  +  + +M+  GL  +  TF+V++D LCK  K++EA   L  +++ GV+  
Sbjct: 294 --NEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVK-- 349

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
               +N V Y  LIDGLCK GK+  A EL Q +   G +P+  +Y+  I  LC  +++ +
Sbjct: 350 ----VNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQ 405

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           A  +  DM  KG+  + V +T ++   +R+
Sbjct: 406 ATLMLEDMMEKGIQASPVTYTIIIDELVRE 435



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YN +IDG C  G ++ A ++F  M     +PNV TY  LIHG C +     A  
Sbjct: 209 EPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMV 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M++ GL+ +VVT+  ++   C    +  A RLL LM   G+ P+ +       +  
Sbjct: 269 LFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDW------TFSV 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK  K++ A+    SL + G+  N V Y   I  LC   ++D A +L   M  +G
Sbjct: 323 LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+   +++L+    R+ + S+   +L  M ++ +       +II+D LV+
Sbjct: 383 FVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVR 434



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 115/216 (53%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V Y ++IDGLCK G +D A EL  +M  E   P+  +Y+SLI G C     ++A  
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +MM++G+Q+  VT+ +I+DEL +    +   ++ D MI  G+ PD      IV Y  
Sbjct: 409 MLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPD------IVTYTV 462

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +   C+ G++++A  +   +   G+ PN+VTYN  I    N   + +A   F  M  KG
Sbjct: 463 FVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKG 522

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             PN   +T L+   ++K+ +   +++ +  D +++
Sbjct: 523 WKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDL 558



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T  Y T++ GLC+ G  ++A+ L  +       PN+V YN+LI G+C A +   A 
Sbjct: 173 CAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHAL 232

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M       +V T+  ++  LCK+ K++ A  L   M++ G+ P      N+V Y 
Sbjct: 233 KVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEP------NVVTYT 286

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C  G L+ A  L   +   GL+PN  T+++ I ALC  E++++A      +  K
Sbjct: 287 ALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKK 346

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           GV  N V++T+L+    +  +     EL++ M     +P A   S ++D L + +
Sbjct: 347 GVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQK 401



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C     TY  ++ GL   G V +A  +F+ M+ ++  P+   Y +++HG C A    EAE
Sbjct: 138 CLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAE 197

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  E M  G + ++V +N ++D  C   +M+ A ++ + M   G R    C  N+  Y 
Sbjct: 198 VLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM--DGNR----CSPNVRTYT 251

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCK GK++ A  L   +  AGL PNVVTY   I   CN+  +  A  L   ME  
Sbjct: 252 ELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETN 311

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN   F+ L+ +  ++ +  +    L S+ K+ V     + + ++D L K 
Sbjct: 312 GLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKT 365



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++  Y + + G C+ G +  A  +F+ M          TY +L+HG   A    EA  +
Sbjct: 105 PDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAV 164

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+ M       D   +  ++  LC+  + +EA  LL+  +  G  P      NIV Y  L
Sbjct: 165 FVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEP------NIVVYNAL 218

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  G++++A ++ + +      PNV TY   IH LC   ++++A  LF  M   G+
Sbjct: 219 IDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGL 278

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN V +T L+     +        LL  M+   ++P     S+++D L K E
Sbjct: 279 EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKRE 331



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 129/278 (46%), Gaps = 46/278 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAE 71
           P+ VTY   +   C+EG ++ A+ + +QM D  + PN+VTYN+LI G  YAN G  ++A 
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRG--YANLGLVSQAF 512

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL------DLMI--------QGGV 117
             F  M+ +G + +  ++ V++  + K    D +  +       DL +        Q  +
Sbjct: 513 STFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPL 572

Query: 118 RPDAF-------CEINIV--------------------AYGCLIDGLCKIGKLKNARELS 150
             D +       C ++ +                     Y  +ID  C++  L +A  L 
Sbjct: 573 AADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLL 632

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
            S+T++G +P++ +Y I I +LC       A ++F D+ +K    + +++  L+   ++K
Sbjct: 633 DSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQK 692

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEI 247
              ++   LL  M +    P  +I ++I  ++ V NE+
Sbjct: 693 GSVAEFSSLLSVMKEHGYQPSNTINAMITGEITVTNEV 730



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 88/250 (35%), Gaps = 53/250 (21%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL---------------- 57
           PN VTYNT+I G    G V +A   F  M  +   PN  +Y  L                
Sbjct: 490 PNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDI 549

Query: 58  -------------------------------IHGFCYANDGNEAEYLFIEMMDRGLQSDV 86
                                          I   C  +   EA++ F+ M +  L    
Sbjct: 550 WKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSE 609

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
             +  I+D  C+ + + +A  LLD M + G  P      ++ +Y  +I  LC+ G  + A
Sbjct: 610 DVYTSIIDCCCRLKILTDALTLLDSMTKSGYLP------HLESYRIIISSLCEGGNFRTA 663

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
           +E+   L       + + + I I+ L     + +   L   M+  G  P+  I   +   
Sbjct: 664 KEVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMITGE 723

Query: 207 FIRKNETSKV 216
               NE  ++
Sbjct: 724 ITVTNEVQEI 733


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y ++I G CKEG +  A  L+ +M  + I+PN  T+ +LI G C+AN   EA  
Sbjct: 457 KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANK 516

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM++  +  + VT+NV+++  CK      A  LLD M++ G+ PD +       Y  
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTY------TYRP 570

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  G++  ARE    L       N + ++  +H  C + ++D A D   +M  +G
Sbjct: 571 LISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRG 630

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           VA + V ++ L+   +R+ +   +I+LL+ M  + + P   + + ++D
Sbjct: 631 VAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMID 678



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 125/240 (52%), Gaps = 8/240 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N   EFG V  P+    + ++DGL K+G +  A +L  ++K   + P++  YN+LI+ 
Sbjct: 307 MMNEMIEFGFV--PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINS 364

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     +EAE LF  M  +GL  + VT+++++D  CK  K+D A   L  M + G++  
Sbjct: 365 MCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKAT 424

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            +       Y  LI G CK+GKL+ A+ L   +   GL PNVV Y   I   C + ++  
Sbjct: 425 VY------PYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHN 478

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  L+ +M  KG++PN   FT L+      N  ++  +L   M + NV+P     +++++
Sbjct: 479 AFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIE 538



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +ID  CK G +D A     +M +  I   V  Y+SLI G C       A+ L
Sbjct: 388 PNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSL 447

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+  GL+ +VV +  ++   CK  ++  A RL   M   G+ P+ +       +  L
Sbjct: 448 FDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTY------TFTAL 501

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC   ++  A +L   +    ++PN VTYN+ I   C +    +A +L  +M  KG+
Sbjct: 502 ISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGL 561

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM----DKRNVMPYASIL 235
            P+   +  L+         S+  E +  +     K N M ++++L
Sbjct: 562 VPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALL 607



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 90/196 (45%), Gaps = 40/196 (20%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN--------------------- 50
           C PN VTY  +I+GLCK G +DKA+ L  +M   N  PN                     
Sbjct: 701 CLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAI 760

Query: 51  -------------VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                         VTYN LI GFC      EA  + + M+D G+  D ++++ I+ E C
Sbjct: 761 QLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYC 820

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +   + EA +L + M+  GV PD       VAY  LI G C  G+L  A EL   + R G
Sbjct: 821 RRGDLKEAIKLWESMLNRGVNPDT------VAYNFLIYGCCVTGELTKAFELRDDMMRRG 874

Query: 158 LMPNVVTYNITIHALC 173
           + PN  TYN  IH  C
Sbjct: 875 VKPNRATYNSLIHGTC 890



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   Y  ++  LC+     +A+E+  +M+    + +V TYN  I G C      EA  
Sbjct: 212 RPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVE 271

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   +  +GL++DV T+  ++  LCK  + +    +++ MI+ G  P         A   
Sbjct: 272 IKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSE------AAVSN 325

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGL K G + +A +L   + + G+ P++  YN  I+++C D ++D+A  LF +M  KG
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASILS 236
           + PN V ++ L+ SF ++ +    +  L  M     K  V PY+S++S
Sbjct: 386 LFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLIS 433



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 40/252 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N + ++ ++ G CKEG +D A +   +M    +  ++V Y+ LI+G     D      
Sbjct: 597 KLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIID 656

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M D+GL+ D V +  ++D   K   +  A  L D+M+  G  P      N+V Y  
Sbjct: 657 LLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLP------NVVTYTA 710

Query: 133 LIDGLCKIGKLKNARELSQSLTRA----------------------------------GL 158
           LI+GLCKIG +  A  L + +  +                                  G 
Sbjct: 711 LINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGF 770

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           + N VTYNI I   C   ++ +A ++ ++M   G++P+C+ ++T++  + R+ +  + I+
Sbjct: 771 LANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIK 830

Query: 219 LLRSMDKRNVMP 230
           L  SM  R V P
Sbjct: 831 LWESMLNRGVNP 842



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y T+ID   K G +  A  L+  M  E   PNVVTY +LI+G C     ++AE 
Sbjct: 667 RPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAEL 726

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+      +  T+   +D L     +++A +L D++++G +        N V Y  
Sbjct: 727 LCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFL-------ANTVTYNI 779

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK+G+++ A E+  ++  +G+ P+ ++Y+  I+  C    + +A  L+  M  +G
Sbjct: 780 LIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRG 839

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V P+ V +  L+       E +K  EL   M +R V P
Sbjct: 840 VNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKP 877



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 6/204 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M D  I P + T + +++G         A +LF E++  GL+ DV  +  ++  LC+ + 
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
              A  ++  M   G      C++++  Y   I GLCK  ++  A E+   L+  GL  +
Sbjct: 231 FIRAREVIGRMESSG------CDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRAD 284

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V TY   +  LC  E+ +   ++  +M   G  P+    + L+    +K       +L+ 
Sbjct: 285 VGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVN 344

Query: 222 SMDKRNVMPYASILSIIVDLLVKN 245
            + K  V P   + + +++ + K+
Sbjct: 345 KVKKFGVAPSLFVYNALINSMCKD 368


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VTYN I+DG+C+EG VD A+EL   +      PN V YN+++ G   A    + E
Sbjct: 218 CTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVE 277

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM          T +V++  LC+      A RLL+ M +        C  NIV Y 
Sbjct: 278 ELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHD------CTANIVTYN 331

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLC+ G +  A  L  ++   G  PN+ TYNI +  LCN E+ + A DL   M   
Sbjct: 332 AVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQT 391

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              P+ + F T++    +K  T + +E+ + M ++   P +   S +++ L K 
Sbjct: 392 DCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKT 445



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 7/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N VTYN ++ GLC++G VD A  L   M+ +   PN+ TYN L+ G C A    +AE
Sbjct: 323 CTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAE 382

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M       D++TFN I+  LC+     +A  +   M      P+  C  N V Y 
Sbjct: 383 DLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQM------PEKGCCPNSVTYS 436

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GL K GK++ + EL   +   G  P  + Y++    L  ++++ +A  +   ++  
Sbjct: 437 SVIEGLAKTGKMEQSLELLNEMGSKGFNPE-INYHLLAECLNEEDKLVEAIQMVHKLQDT 495

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G++P  V++ T++    R  +T + I++L +M     MP  S  SI++  L 
Sbjct: 496 GISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLA 547



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 118/307 (38%), Gaps = 67/307 (21%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
             VTY+ + DG C+ G +D+A+ +   M    + P+   YN L+H  C      +A  L 
Sbjct: 119 TAVTYSALADGYCRVGRLDEARRVVDGMP---VLPSAYAYNPLMHALCVRGQVRDALVLL 175

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCEI 125
             M+ RG   DVVT+N++++  CK R   +A  L+DLM   G  P         D  C  
Sbjct: 176 DNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCRE 235

Query: 126 -----------NIVAYGC------------------------------------------ 132
                      ++ +YGC                                          
Sbjct: 236 GDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATL 295

Query: 133 --LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I  LC+ G  + A  L + +++     N+VTYN  +  LC    +D A  L  +M+ 
Sbjct: 296 SVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQT 355

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            G  PN   +  L+             +L+  M + + +P     + I+  L +  +++ 
Sbjct: 356 DGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQ 415

Query: 251 SIPQFNR 257
           ++  F +
Sbjct: 416 AVEVFKQ 422



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 12/234 (5%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C P+    N ++  LC+ G    A  +             VTY++L  G+C     +EA
Sbjct: 83  LCPPDVALANRLVRDLCRRGRPADAARVVEACGSA---ATAVTYSALADGYCRVGRLDEA 139

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +   M    +      +N +M  LC   ++ +A  LLD M+  G  PD      +V Y
Sbjct: 140 RRVVDGM---PVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPD------VVTY 190

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L++  CK    + A EL   +   G  P  VTYN+ +  +C +  +D A +L   +  
Sbjct: 191 NILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPS 250

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G  PN V + T++           V EL+  M   N  P  + LS+++  L +
Sbjct: 251 YGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQ 304



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 34/135 (25%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM----------------------------- 42
           C PN+VTY+++I+GL K G ++++ EL  +M                             
Sbjct: 428 CCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVEAIQ 487

Query: 43  -----KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                +D  I+P  V YN+++ G C     ++A  +   M+  G   D  T+++++  L 
Sbjct: 488 MVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLA 547

Query: 98  KNRKMDEATRLLDLM 112
               M EA  LL  +
Sbjct: 548 HEGYMKEARELLSTL 562



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P  V YNTI+ GLC+ G  D+A ++   M  +   P+  TY+ LI G  +     EA  
Sbjct: 498 SPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEA-- 555

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKN 99
                  R L S + + +VI+D L KN
Sbjct: 556 -------RELLSTLSSRDVIVDNLIKN 575


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 8/222 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYNT+I GLC  G  + A++L  +M+D+NI  NV TY+S+I          E+  
Sbjct: 78  EPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYK 137

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EMM  G   DV  FN +M    ++  M++A  +   M++ G +PD       V+Y  
Sbjct: 138 VLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDN------VSYHI 191

Query: 133 LIDGLCKIGKLKNA-RELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           LI GL KIGKL  + + LS+   R AG +PNV+T++  IH LC   +++KA ++F  M  
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE 251

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
            G  PN   +TTL+    R  +  +  EL   M +  + P A
Sbjct: 252 AGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDA 293



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 129/249 (51%), Gaps = 9/249 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEA 70
           C P+ VTYN +I+  C  G   KA +LF  MK E  + P+  TYN+LI G C + +   A
Sbjct: 41  CVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGA 100

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  EM D+ + ++V T++ I+  L K  K +E+ ++L+ M+  G  PD F      A+
Sbjct: 101 RKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVF------AF 154

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++ G  +   ++ ARE+ Q +  +G  P+ V+Y+I IH L    ++D++  +  +M +
Sbjct: 155 NGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAM 214

Query: 191 K--GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
           +  G  PN + F+TL+    R  E  K +E+  SM +    P     + ++  L + E  
Sbjct: 215 RAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKV 274

Query: 249 LNSIPQFNR 257
           + +   F +
Sbjct: 275 IQARELFEK 283



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 120/220 (54%), Gaps = 9/220 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           KP+ V+Y+ +I GL K G +D++ ++   + M+     PNV+T+++LIHG C   +  +A
Sbjct: 183 KPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKA 242

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F  M++ G + +  T+  ++  LC+  K+ +A  L + M Q  + PDA      VAY
Sbjct: 243 LEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDA------VAY 296

Query: 131 GCLIDGLCKIGKLKNARELSQSLT-RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
             LI G CK G +  A +L + ++  AGL P +VT+N  I   C   ++ +A++L  +M 
Sbjct: 297 NSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMG 356

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            KG+A +   +  L+    R  +  + +E+ + M ++  +
Sbjct: 357 TKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFL 396



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +T++T+I GLC+ G ++KA E+F  M +    PN  TY +LI G C A    +A  L
Sbjct: 221 PNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQAREL 280

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGC 132
           F +M    +  D V +N ++   CK   MDEA +L   M  G G++P       IV +  
Sbjct: 281 FEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQP------TIVTFNT 334

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK+GKL  A EL   +   GL  +  TY I I  L    ++D+A +++  M  K 
Sbjct: 335 LIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKK 394

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + V   + +    +     +   +  +  K   +P      I+ + L+K
Sbjct: 395 FLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIK 446



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 105/218 (48%), Gaps = 7/218 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  TY T+I GLC+   V +A+ELF +M    I P+ V YNSLI G+C     +EAE
Sbjct: 254 CKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAE 313

Query: 72  YLFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            L+ EM    GLQ  +VTFN ++D  CK  K+  A  L+  M   G+  D         Y
Sbjct: 314 KLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAAD------TCTY 367

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GL +  KL  A E+ + +     + + V+    +  LC    +D+A+ +F     
Sbjct: 368 RILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRK 427

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            G  PN   F  L  S I+        +L+     R++
Sbjct: 428 SGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARDI 465



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 42/234 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C      Y+ ++  L K G + +A E+F  MK E+  P++VTY                 
Sbjct: 6   CAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTY----------------- 48

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIVAY 130
                             NV+++  C   +  +A  L   M  +  V PD +       Y
Sbjct: 49  ------------------NVLINSRCNAGEFGKALDLFQSMKREKRVEPDRW------TY 84

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GLC  G  + AR+L   +    +  NV TY+  I +L  + + ++++ +  +M  
Sbjct: 85  NTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMA 144

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            G  P+   F  +M  F R N   K  E+ + M +    P      I++  L K
Sbjct: 145 AGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAK 198



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +P  VT+NT+IDG CK G + +A EL  +M  + +  +  TY  LI G   A   +
Sbjct: 322 GAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLD 381

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  ++ +M ++    D V+    +  LCK   +D+A  + +   + G  P      N  
Sbjct: 382 EALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVP------NPE 435

Query: 129 AYGCLIDGLCKIGKLKNAREL 149
            +  L + L K+G++++A++L
Sbjct: 436 TFRILSESLIKLGRVEDAQKL 456



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A C I   AY  ++  L K G L  A E+ +++     +P++VTYN+ I++ CN  +  K
Sbjct: 4   AKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGK 63

Query: 181 AHDLFLDMEV-KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           A DLF  M+  K V P+   + TL+        T    +LL  M  +N+       S I+
Sbjct: 64  ALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSII 123

Query: 240 DLLVK 244
             LVK
Sbjct: 124 KSLVK 128


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N +IDG  K+  +  + ++F +M D+++ PNV++YNSLI+G C     +EA  +
Sbjct: 294 PNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISM 353

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G+Q +++T+N +++  CKN  + EA  +   +   G  P          Y  L
Sbjct: 354 RDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVP------TTRMYNML 407

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  CK+GK+ +   L + + R G++P+V TYN  I  LC +  ++ A  LF  +  KG+
Sbjct: 408 IDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL 467

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+ V F  LM  + RK E+ K   LL+ M K  + P     +I++
Sbjct: 468 -PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVM 512



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 131/236 (55%), Gaps = 9/236 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC-YANDGN--E 69
           +PN  T+N +I+ LCK G ++KA+++   MK    +PNVV+YN+LI G+C    +G   +
Sbjct: 220 QPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYK 279

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ +  EM++  +  ++ TFN+++D   K+  +  + ++   M+   V+P      N+++
Sbjct: 280 ADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKP------NVIS 333

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI+GLC  GK+  A  +   +  AG+ PN++TYN  I+  C ++ + +A D+F  ++
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVK 393

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +G  P   ++  L+ ++ +  +      L   M++  ++P     + ++  L +N
Sbjct: 394 GQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 12/228 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN ++YN++I+GLC  G + +A  +  +M    + PN++TYN+LI+GFC  +   EA  
Sbjct: 328 KPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALD 387

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  +  +G       +N+++D  CK  K+D+   L + M + G+ PD      +  Y C
Sbjct: 388 MFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPD------VGTYNC 441

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+ G ++ A++L   LT  GL P++VT++I +   C   +  KA  L  +M   G
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMG 500

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-----NVMPYASIL 235
           + P  + +  +M  + ++        +   M+K      NV  Y  +L
Sbjct: 501 LKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLL 548



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 98/188 (52%), Gaps = 8/188 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T  YN +ID  CK G +D    L  +M+ E I P+V TYN LI G C   +   A+ L
Sbjct: 399 PTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKL 458

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F ++  +GL  D+VTF+++M+  C+  +  +A  LL  M + G++P        + Y  +
Sbjct: 459 FDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRH------LTYNIV 511

Query: 134 IDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           + G CK G LK A  +   + +   L  NV +YN+ +       +++ A+ L  +M  KG
Sbjct: 512 MKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKG 571

Query: 193 VAPNCVIF 200
           + PN + +
Sbjct: 572 LVPNRITY 579



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 6/154 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN +I GLC+ G ++ AK+LF Q+  + + P++VT++ L+ G+C   +  +A  L
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAML 492

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GL+   +T+N++M   CK   +  AT +   M       +    +N+ +Y  L
Sbjct: 493 LKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQM-----EKERRLRMNVASYNVL 547

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           + G  + GKL++A  L   +   GL+PN +TY I
Sbjct: 548 LQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEI 581



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 101/199 (50%), Gaps = 11/199 (5%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFC 123
           N   + EY++ EM+ R +Q +V TFNV+++ LCK  KM++A  ++ D+ + G       C
Sbjct: 202 NRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG-------C 254

Query: 124 EINIVAYGCLIDGLCKI---GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
             N+V+Y  LIDG CK+   GK+  A  + + +    + PN+ T+NI I     D+ +  
Sbjct: 255 SPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPG 314

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +  +F +M  + V PN + + +L+       + S+ I +   M    V P     + +++
Sbjct: 315 SMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALIN 374

Query: 241 LLVKNEISLNSIPQFNRQK 259
              KN++   ++  F   K
Sbjct: 375 GFCKNDMLKEALDMFGSVK 393



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 3/117 (2%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L K  +  +   + + + R  + PNV T+N+ I+ALC   +M+KA D+  DM+V G
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIE---LLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +PN V + TL+  + +     K+ +   +L+ M + +V P  +  +I++D   K++
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDD 310



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KP  +TYN ++ G CKEG +  A  +  QM K+  +  NV +YN L+ G+       +A 
Sbjct: 502 KPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDAN 561

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDEL 96
            L  EM+++GL  + +T+ ++ +E+
Sbjct: 562 MLLNEMLEKGLVPNRITYEIVKEEM 586


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 121/210 (57%), Gaps = 15/210 (7%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           +GNR     C PN  TY  +I GLCK G V++A  LF +M +  + PNVVTY +LI G C
Sbjct: 239 DGNR-----CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQC 293

Query: 63  YANDGN-EAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             N+G+ +  +  + +M+  GL  +  TF+V++D LCK  K++EA   L  +++ GV+  
Sbjct: 294 --NEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVK-- 349

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
               +N V Y  LIDGLCK GK+  A EL Q +   G +P+  +Y+  I  LC  +++ +
Sbjct: 350 ----VNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQ 405

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           A  +  DM  KG+  + V +T ++   +R+
Sbjct: 406 ATLMLEDMMEKGIQASPVTYTIIIDELVRE 435



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YN +IDG C  G ++ A ++F  M     +PNV TY  LIHG C +     A  
Sbjct: 209 EPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMV 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M++ GL+ +VVT+  ++   C    +  A RLL LM   G+ P+ +       +  
Sbjct: 269 LFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDW------TFSV 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK  K++ A+    SL + G+  N V Y   I  LC   ++D A +L   M  +G
Sbjct: 323 LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+   +++L+    R+ + S+   +L  M ++ +       +II+D LV+
Sbjct: 383 FVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVR 434



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 115/216 (53%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V Y ++IDGLCK G +D A EL  +M  E   P+  +Y+SLI G C     ++A  
Sbjct: 349 KVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +MM++G+Q+  VT+ +I+DEL +    +   ++ D MI  G+ PD      IV Y  
Sbjct: 409 MLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPD------IVTYTV 462

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +   C+ G++++A  +   +   G+ PN+VTYN  I    N   + +A   F  M  KG
Sbjct: 463 FVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKG 522

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             PN   +T L+   ++K+ +   +++ +  D +++
Sbjct: 523 WKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDL 558



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T  Y T++ GLC+ G  ++A+ L  +       PN+V YN+LI G+C A +   A 
Sbjct: 173 CAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHAL 232

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M       +V T+  ++  LCK+ K++ A  L   M++ G+ P      N+V Y 
Sbjct: 233 KVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEP------NVVTYT 286

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C  G L+ A  L   +   GL+PN  T+++ I ALC  E++++A      +  K
Sbjct: 287 ALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKK 346

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           GV  N V++T+L+    +  +     EL++ M     +P A   S ++D L + +
Sbjct: 347 GVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQK 401



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C     TY  ++ GL   G V +A  +F+ M+ ++  P+   Y +++HG C A    EAE
Sbjct: 138 CLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAE 197

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  E M  G + ++V +N ++D  C   +M+ A ++ + M   G R    C  N+  Y 
Sbjct: 198 VLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM--DGNR----CSPNVRTYT 251

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCK GK++ A  L   +  AGL PNVVTY   I   CN+  +  A  L   ME  
Sbjct: 252 ELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETN 311

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN   F+ L+ +  ++ +  +    L S+ K+ V     + + ++D L K 
Sbjct: 312 GLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKT 365



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++  Y + + G C+ G +  A  +F+ M          TY +L+HG   A    EA  +
Sbjct: 105 PDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTV 164

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+ M       D   +  ++  LC+  + +EA  LL+  +  G  P      NIV Y  L
Sbjct: 165 FVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEP------NIVVYNAL 218

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  G++++A ++ + +      PNV TY   IH LC   ++++A  LF  M   G+
Sbjct: 219 IDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGL 278

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN V +T L+     +        LL  M+   ++P     S+++D L K E
Sbjct: 279 EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKRE 331


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 9/236 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY T+I+GLCK+  + +A  LF  M  + I+PN  TY+SLIHG C      EA  
Sbjct: 112 QPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIR 171

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKN---RKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           LF  M+ R +  D +TFN ++D LCK    + MD+A  L + M Q G+ PD       V 
Sbjct: 172 LFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDT------VT 225

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI GLC +G+L++A  L   +   G +P++VTY I    LC + ++ +A  L   +E
Sbjct: 226 YNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIE 285

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              + P+  I++ +M    R  E     +L   +  + + P     +I+++ L + 
Sbjct: 286 GTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQ 341



 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 9/231 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T T+ T+I GLC EG + +A +LF +M  E   P+V+TY +LI+G C      EA  
Sbjct: 77  QPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALS 136

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M+ +G+  +  T++ ++  LC      EA RL   MI   + PD       + +  
Sbjct: 137 LFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQ------LTFNT 190

Query: 133 LIDGLCKIGKLK---NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           L+D LCK G ++    A  L + +++ GL+P+ VTYN  IH LC+  ++  A  LF +M 
Sbjct: 191 LVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMV 250

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V G  P+ V +  L     + +  ++ + LL+ ++  N+ P   I SI++D
Sbjct: 251 VYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMD 301



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 115/271 (42%), Gaps = 44/271 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN-------- 65
           P+ V ++ ++  + +         L+ QM    I  N  T N LI+ FC+ N        
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 66  -------------------------DG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                                    +G   EA  LF +M   G Q DV+T+  +++ LCK
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
           +R++ EA  L   M+  G+ P+ F       Y  LI GLC +G  K A  L  ++    +
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNF------TYSSLIHGLCILGHWKEAIRLFYAMIHRKI 181

Query: 159 MPNVVTYNITIHALCND---EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
           MP+ +T+N  + ALC +   + MDKA  LF +M  +G+ P+ V + TL+           
Sbjct: 182 MPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRD 241

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            I L   M     +P      I+ D L KN 
Sbjct: 242 AIALFHEMVVYGQIPDLVTYRILFDYLCKNH 272



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 56/99 (56%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  + D LCK   + +A  L   ++  N++P++  Y+ ++ G C A +   A  L
Sbjct: 256 PDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDL 315

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           F ++  +GL  DV T+ ++++ LC+   + EA++L   M
Sbjct: 316 FSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEM 354



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 45/76 (59%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G    P+   Y+ ++DG+C+ G ++ A++LF ++  + ++P+V TY  +I+G C      
Sbjct: 286 GTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLA 345

Query: 69  EAEYLFIEMMDRGLQS 84
           EA  LF EM +  ++S
Sbjct: 346 EASKLFGEMDENDIES 361


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+T I+  CK    D AK++F +M+  +   N VTYN +I G C +    EA   
Sbjct: 241 PDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 300

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+D GL  D  T+  +M+ LCK  ++ EA  LLD M   G++P      NIV YG L
Sbjct: 301 KEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKP------NIVVYGTL 354

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K GK   A ++ + +  AG+ PN + Y+  I  LC   Q+ +A  L  +M   G+
Sbjct: 355 VDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGL 414

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   +  LM    ++++     ELL  M    ++P      I+++ L +N
Sbjct: 415 RPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQN 466



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 129/263 (49%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + Y+ +I GLCK G + +A +L  +M    + P+  TYN L+ G    +D + A  
Sbjct: 380 QPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFE 439

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L  EM + G+  +V ++ ++++ LC+N +  EA  LL+ MI  G++P+AF          
Sbjct: 440 LLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHS 499

Query: 123 --------CEI-----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                   CE            ++  Y  LI GL  +G+++ A E    + + GL+P+  
Sbjct: 500 KEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEF 559

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY+  IH  C    ++KA  L   M   G+ PN   +T L+  + + N+  KV  +L+SM
Sbjct: 560 TYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSM 619

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
                 P   I  I++  L ++E
Sbjct: 620 LGSGDKPDNHIYGIVIRNLSRSE 642



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N VTYN +I GLC+ G V++A     +M D  ++P+  TY +L++G C  +   EA+
Sbjct: 274 CAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAK 333

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM   GL+ ++V +  ++D   K  K  EA  +L  MI  GV+P      N + Y 
Sbjct: 334 ALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQP------NKIMYD 387

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCKIG+L  A +L + + + GL P+  TYN  +         D A +L  +M   
Sbjct: 388 NLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNS 447

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           G+ PN   +  ++    +  E+ +   LL  M    + P A + + ++
Sbjct: 448 GILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLI 495



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I G CK G ++KA +L  QM +  + PN  TY  L+ G+  +ND  +   +
Sbjct: 556 PDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSI 615

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G + D   + +++  L ++  M+ A  +L  + + G+ PD      +  Y  L
Sbjct: 616 LQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPD------LHIYSSL 669

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCKI  ++ A  L   + + GL P +V YN  I   C    + +A ++F  +  KG+
Sbjct: 670 ISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGL 729

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PNCV +T L+    +  + +   +L + M  R + P A + +++ 
Sbjct: 730 VPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLA 775



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 110/211 (52%), Gaps = 10/211 (4%)

Query: 24  DGLCKEGFVDKAKELFLQMKD----ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           +GL K+     A EL  ++K       I P+V TY++ I   C A D + A+ +F EM  
Sbjct: 212 NGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRR 271

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           R    + VT+NV++  LC++  ++EA    + M+  G+ PDAF       YG L++GLCK
Sbjct: 272 RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAF------TYGALMNGLCK 325

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
             +LK A+ L   ++ +GL PN+V Y   +     + +  +A D+  +M   GV PN ++
Sbjct: 326 GSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIM 385

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +  L+    +  +  +  +LL+ M K  + P
Sbjct: 386 YDNLIRGLCKIGQLGRASKLLKEMIKVGLRP 416



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   Y  +I G  KEG +  A E   +M   N++P++  YNSLI G        EAE 
Sbjct: 485 KPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEE 544

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + ++  RGL  D  T++ ++   CK   +++A +LL  M+  G++P+A        Y  
Sbjct: 545 YYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNA------DTYTD 598

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K    +    + QS+  +G  P+   Y I I  L   E M+ A  +  ++E  G
Sbjct: 599 LLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNG 658

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+  I+++L+    +  +  K + LL  M K  + P     + ++D
Sbjct: 659 LVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALID 706



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN++I GL   G +++A+E + Q++   + P+  TY+ LIHG+C   +  +A+ L
Sbjct: 521 PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQL 580

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++ GL+ +  T+  +++   K+   ++ + +L  M+  G +PD         YG +
Sbjct: 581 LRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHI------YGIV 634

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  L +   ++ A  +   + + GL+P++  Y+  I  LC    M+KA  L  +M  +G+
Sbjct: 635 IRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGL 694

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P  V +  L+  F R  + S+   +  S+  + ++P     + ++D   KN
Sbjct: 695 EPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKN 746



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 31/228 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y+++I GLCK   ++KA  L  +M  E + P +V YN+LI GFC + D + A  +
Sbjct: 661 PDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNV 720

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
           F  ++ +GL  + VT+  ++D  CKN  + +A  L   M+  G+ PDAF   N++A GC 
Sbjct: 721 FDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFV-YNVLATGCS 779

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       L+ G CK GKL+   +L   +    ++PN  T
Sbjct: 780 DAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQT 839

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV-IFTTLMPSFIRKN 211
               +       ++ +AH +F +++ K  + +    F+ L    I K 
Sbjct: 840 VEKVVSEFGKAGKLGEAHRVFAELQQKKASQSATDRFSLLFTDMINKG 887



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 112/227 (49%), Gaps = 7/227 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   Y  +I  L +   ++ A  +  +++   + P++  Y+SLI G C   D  +A  
Sbjct: 625 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVG 684

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   GL+  +V +N ++D  C++  +  A  + D ++  G+ P      N V Y  
Sbjct: 685 LLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVP------NCVTYTA 738

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G + +A +L + +   G+ P+   YN+      +   +++A  L  +M  +G
Sbjct: 739 LIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 798

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            A N  +F TL+  F ++ +  +  +LL  M  R ++P A  +  +V
Sbjct: 799 YA-NVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVV 844



 Score = 43.5 bits (101), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 84/235 (35%), Gaps = 18/235 (7%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +  P+   +  +   LC      +A  L  QM   + +P +V  +  I       D    
Sbjct: 110 IAPPSADAFARLAASLCAASLFPQANGLLHQMILAHPHPPLVLAS--IQRAIQDTDHRS- 166

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                    R         +V++D   K   +  A +++ +M   G+ P   C   ++  
Sbjct: 167 ---------RSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKD 217

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
               D +  + KLK   E       AG++P+V TY+  I A C     D A  +F +M  
Sbjct: 218 LLRADAMELLWKLKGFME------GAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRR 271

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  A N V +  ++    R     +       M    + P A     +++ L K 
Sbjct: 272 RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKG 326


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  137 bits (345), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 141/266 (53%), Gaps = 29/266 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN+I+DG  KEG +D A  ++ +M +  ++PNVVTY SLI+GFC +N  + A   
Sbjct: 567 PSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKT 626

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
             EM ++GL+ DV  ++ ++D  CK R M+ A  L   +++ G+ P+          F +
Sbjct: 627 RDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRD 686

Query: 125 IN--------------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           +N                    +  Y  LIDGL K G+L  A +L   +   G++P+++T
Sbjct: 687 LNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIIT 746

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           +++ ++ LCN  Q++ A  +  +M+ K + P+ +I+ TL+  + R+    +   L   M 
Sbjct: 747 FHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEML 806

Query: 225 KRNVMPYASILSIIVDLLVKNEISLN 250
            R ++P      I+++   K + SL+
Sbjct: 807 DRGLVPDDVTYDILINGKFKGDRSLS 832



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +I+G C  G ++KA EL+ QMK   I P+V   NSL+ G+  A    EA  L
Sbjct: 358 PNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKL 417

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E +D G+ +++ T+N++M  LCK  KMDEA  LLD M+  G+ P      N+V+Y  +
Sbjct: 418 FDEAVDCGV-ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVP------NVVSYNDM 470

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G +  A  +   +    L PNVVTY+I I         +KA DLF  M    +
Sbjct: 471 ILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNI 530

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           AP    F T++    +  + S+  + L++  +   +P     + IVD  +K
Sbjct: 531 APTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIK 581



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN ++  LCK G +D+A  L   M ++ + PNVV+YN +I G C   + + A  +F
Sbjct: 428 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 487

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M+ R L+ +VVT+++++D   K    ++A  L D M+   + P  F       +  +I
Sbjct: 488 SDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDF------TFNTII 541

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK+G++  AR+  ++    G +P+ +TYN  +     +  +D A  ++ +M   GV+
Sbjct: 542 NGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS 601

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           PN V +T+L+  F + N     ++    M ++ +    +  S ++D   K
Sbjct: 602 PNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCK 651



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 8/233 (3%)

Query: 13  KP-NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KP N V   +++ G C +G +D A  LF ++ ++ + PN VTY+ LI G C + +  +A 
Sbjct: 321 KPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKAS 380

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+ +M   G+   V   N ++    K    +EA++L D  +  GV        NI  Y 
Sbjct: 381 ELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV-------ANIFTYN 433

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++  LCK GK+  A  L  ++   G++PNVV+YN  I   C    MD A  +F DM  +
Sbjct: 434 IMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLAR 493

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + PN V ++ L+    +K ++ K ++L   M   N+ P     + I++ L K
Sbjct: 494 DLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCK 546



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY+ +IDG  K+G  +KA +LF QM   NI P   T+N++I+G C     +EA  
Sbjct: 496 KPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARD 555

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
                ++ G     +T+N I+D   K   +D A  +   M + GV P      N+V Y  
Sbjct: 556 KLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSP------NVVTYTS 609

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK  ++  A +    +   GL  +V  Y+  I   C    M+ A DLF ++   G
Sbjct: 610 LINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVG 669

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++PN +++ +++  F   N     +   + M    +       + ++D L+K
Sbjct: 670 LSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK 721



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 9/224 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T + ++    KEG V++A+E F + K+  +  +   Y+ +I   C   + N    L  EM
Sbjct: 222 TVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEM 281

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +RG      TF  ++        M EA RL + MI  G +P     +N+V    L+ G 
Sbjct: 282 KERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCG-KP-----MNLVVATSLMKGY 335

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G L +A  L   +T  GL PN VTY++ I   CN   ++KA +L+  M++ G+ P+ 
Sbjct: 336 CAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSV 395

Query: 198 VIFTTLMPSFIRK---NETSKVIELLRSMDKRNVMPYASILSII 238
               +L+  +++     E SK+ +        N+  Y  ++S +
Sbjct: 396 FNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWL 439



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N +++   +   ++ A + F  M  +++ P V   N L+      N   E   L+ +M+
Sbjct: 153 FNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMV 212

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
            RG+  D  T +V++    K  +++EA        + GV+ DA       AY  +I  +C
Sbjct: 213 LRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDA------GAYSIIIQAVC 266

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K        EL + +   G +P+  T+   I A      M +A  L  +M   G   N V
Sbjct: 267 KKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLV 326

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + T+LM  +  +      + L   + +  + P     S++++
Sbjct: 327 VATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIE 368



 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 80/200 (40%), Gaps = 16/200 (8%)

Query: 61  FCYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD-EATRLLDLMIQGGVR 118
            C+ ND   A  Y       RG    V  + V++  L ++ +    A +LL+  + G   
Sbjct: 68  LCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSD 127

Query: 119 PDAFC--------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           P                  E++   +  L++   +  +++NA +   ++    ++P V  
Sbjct: 128 PSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPY 187

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
            NI + AL     + +  DL+  M ++G+  +      ++ + +++    +  E  R   
Sbjct: 188 MNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETK 247

Query: 225 KRNVMPYASILSIIVDLLVK 244
           +R V   A   SII+  + K
Sbjct: 248 ERGVKLDAGAYSIIIQAVCK 267


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 131/245 (53%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V+Y+T++D  CKEG + +A + ++ M+   + PN  TY SLI   C   + ++A  
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR 423

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+  G++ +VVT+  ++D LC   +M EA  L   M   GV P      N+ +Y  
Sbjct: 424 LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP------NLASYNA 477

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K   +  A EL   L   G+ P+++ Y   I  LC+ E+++ A  +  +M+  G
Sbjct: 478 LIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 537

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +  N +I+TTLM ++ +    ++ + LL  M + ++        +++D L KN++   ++
Sbjct: 538 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 597

Query: 253 PQFNR 257
             FNR
Sbjct: 598 DYFNR 602



 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 120/251 (47%), Gaps = 29/251 (11%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +P   TYN +ID +CKEG V+ A+ LF +MK   + P+ VTYNS+I GF      +
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 314

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------- 119
           +    F EM D   + DV+T+N +++  CK  K+         M   G++P         
Sbjct: 315 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLV 374

Query: 120 DAFCE--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           DAFC+                     N   Y  LID  CKIG L +A  L   + + G+ 
Sbjct: 375 DAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVE 434

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            NVVTY   I  LC+ E+M +A +LF  M+  GV PN   +  L+  F++     + +EL
Sbjct: 435 WNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL 494

Query: 220 LRSMDKRNVMP 230
           L  +  R + P
Sbjct: 495 LNELKGRGIKP 505



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T + N ++    K G  D  K  F  M      P V TYN +I   C   D   A  L
Sbjct: 225 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGL 284

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  D VT+N ++D   K  ++D+     + M       D  CE +++ Y  L
Sbjct: 285 FEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEM------KDMCCEPDVITYNAL 338

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CK GKL    E  + +   GL PNVV+Y+  + A C +  M +A   ++DM   G+
Sbjct: 339 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 398

Query: 194 APNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASILSIIVD 240
            PN   +T+L+ +  +    S       E+L+   + NV+ Y +++  + D
Sbjct: 399 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCD 449



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 125/266 (46%), Gaps = 34/266 (12%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           GN    V  + N VTY  +IDGLC    + +A+ELF +M    + PN+ +YN+LIHGF  
Sbjct: 425 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 484

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---- 119
           A + + A  L  E+  RG++ D++ +   +  LC   K++ A  +++ M + G++     
Sbjct: 485 AKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLI 544

Query: 120 -----DAF--------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
                DA+                     E+ +V +  LIDGLCK   +  A +    ++
Sbjct: 545 YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRIS 604

Query: 155 R-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              GL  N   +   I  LC D Q++ A  LF  M  KG+ P+   +T+LM    ++   
Sbjct: 605 NDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNV 664

Query: 214 SKVIELLRSMD----KRNVMPYASIL 235
            + + L   M     K +++ Y S++
Sbjct: 665 LEALALRDKMAEIGMKLDLLAYTSLV 690



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 9/228 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  +E G+  K N++ Y T++D   K G   +   L  +MK+ +I   VVT+  LI G C
Sbjct: 531 NEMKECGI--KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC 588

Query: 63  YANDGNEAEYLFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
                ++A   F  +  D GLQ++   F  ++D LCK+ +++ AT L + M+Q G+ PD 
Sbjct: 589 KNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDR 648

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                  AY  L+DG  K G +  A  L   +   G+  +++ Y   +  L +  Q+ KA
Sbjct: 649 ------TAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 702

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
                +M  +G+ P+ V+  +++          + +EL   + K  ++
Sbjct: 703 RSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLL 750



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 91/242 (37%), Gaps = 41/242 (16%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P    ++ +   L   G +++A + F +MK   + P   + N L+H F         
Sbjct: 187 VCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFA-------- 238

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                                      K  K D+  R    MI  G RP  F       Y
Sbjct: 239 ---------------------------KLGKTDDVKRFFKDMIGAGARPTVF------TY 265

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +ID +CK G ++ AR L + +   GL+P+ VTYN  I       ++D     F +M+ 
Sbjct: 266 NIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKD 325

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
               P+ + +  L+  F +  +    +E  R M    + P     S +VD   K  +   
Sbjct: 326 MCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQ 385

Query: 251 SI 252
           +I
Sbjct: 386 AI 387


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 140/290 (48%), Gaps = 68/290 (23%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT N++IDGLCK   +DKA+ +  QM DE+I PN  TYNSLIHG+  +    EA  +
Sbjct: 285 PNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRI 344

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL------------------------ 109
             EM   G + +VVT+++++D LCK+    EA  +                         
Sbjct: 345 LKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYAT 404

Query: 110 -----------DLMIQGGVRPD---------AFCEI--------------------NIVA 129
                      DLM+Q G+RP          A+C+                     +IVA
Sbjct: 405 EGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVA 464

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +IDGLCKIG+L +A      +   GL P+++T+N  IH      + +KA +LF +M 
Sbjct: 465 YTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMM 524

Query: 190 VKGVAPNCVIFTTLMPSFIRKN---ETSKVIELL-RSMDKRNVMPYASIL 235
            +G+ PN   F +++    ++    E  K+ +L+ R+  K NV+ Y +++
Sbjct: 525 DRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMI 574



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 109/210 (51%), Gaps = 22/210 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y T+IDGLCK G +D A   F QM D+ ++P+++T+N+LIHGF       +AE L
Sbjct: 460 PDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEEL 519

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EMMDRG+  +V TFN ++D+L K  K+ EA +L DLM + G +P      N+V+Y  +
Sbjct: 520 FYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKP------NVVSYNTM 573

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G    G++    +L   +   GL P  VT+N                 L   M   G+
Sbjct: 574 IHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNT----------------LLDGMVSMGL 617

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+ V   TL+ S         ++ L R M
Sbjct: 618 KPDVVTCKTLIDSCCEDGRIEDILTLFREM 647



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 129/308 (41%), Gaps = 76/308 (24%)

Query: 7   EFGVVCKPNTVTY-----------------------------------NTIIDGLCKEGF 31
           E G  C PN V+Y                                   N++IDGLCK   
Sbjct: 243 EDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQA 302

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +DKA+ +  QM DE+I PN  TYNSLIHG+  +    EA  +  EM   G + +VVT+++
Sbjct: 303 MDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSM 362

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG--------------- 136
           ++D LCK+    EA  + + MIQ G +P+A        YG L+ G               
Sbjct: 363 LIDCLCKSGLHAEAREIFNSMIQSGQKPNA------STYGSLLHGYATEGNLVDMNNVKD 416

Query: 137 --------------------LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
                                CK G+L  A      + + G MP++V Y   I  LC   
Sbjct: 417 LMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIG 476

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++D A   F  M   G++P+ + F TL+  F    +  K  EL   M  R + P  +  +
Sbjct: 477 RLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFN 536

Query: 237 IIVDLLVK 244
            ++D L K
Sbjct: 537 SMIDKLFK 544



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 105/198 (53%), Gaps = 8/198 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD--ENINPNVVTYNSLIHGFCYANDGNE 69
           C P+  +Y T++ GLC E   ++A EL   M +  +N  PNVV+Y ++IHGF    D  +
Sbjct: 211 CTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGK 270

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  LF +M+D G+  +VVT N ++D LCK + MD+A  +L  MI   + P      N   
Sbjct: 271 AYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMP------NCTT 324

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI G    G+   A  + + ++R G  PNVVTY++ I  LC      +A ++F  M 
Sbjct: 325 YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMI 384

Query: 190 VKGVAPNCVIFTTLMPSF 207
             G  PN   + +L+  +
Sbjct: 385 QSGQKPNASTYGSLLHGY 402



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 5/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+  +I   C  G ++       Q+    +    VT+  L+   C     ++A  +
Sbjct: 142 PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMNI 201

Query: 74  FIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M + G   DV ++  ++  LC  +K +EA  L+ +M + G      C  N+V+Y  
Sbjct: 202 VLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDN----CPPNVVSYTT 257

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G  K G +  A  L   +   G+ PNVVT N  I  LC  + MDKA  +   M  + 
Sbjct: 258 VIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEH 317

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + PNC  + +L+  ++   + ++ + +L+ M +    P     S+++D L K+ +   + 
Sbjct: 318 IMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAR 377

Query: 253 PQFN 256
             FN
Sbjct: 378 EIFN 381



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 19/130 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N++ID L KEG V +A++LF  M      PNVV+YN++IHG+  A +  E   L
Sbjct: 530 PNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKL 589

Query: 74  FIEMM-------------------DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
             +M+                     GL+ DVVT   ++D  C++ ++++   L   M+ 
Sbjct: 590 LDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLG 649

Query: 115 GGVRPDAFCE 124
              + D   E
Sbjct: 650 KADKTDTITE 659



 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 16/79 (20%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  VT+NT++DG+   G                + P+VVT  +LI   C      +   
Sbjct: 599 KPTAVTFNTLLDGMVSMG----------------LKPDVVTCKTLIDSCCEDGRIEDILT 642

Query: 73  LFIEMMDRGLQSDVVTFNV 91
           LF EM+ +  ++D +T N+
Sbjct: 643 LFREMLGKADKTDTITENI 661


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 118/217 (54%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I+ LCKE   ++A ELF  M   N+ P+VV Y++LI GF   ++  +A  L
Sbjct: 533 PNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALML 592

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  M+  G+  D+V + ++++ LC   +M EA  L   M + G+ PD       ++Y  +
Sbjct: 593 YARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDK------ISYTSV 646

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+IG ++ A  L   + + G +P VVTY   +   C   ++D A  L  +M+ KG+
Sbjct: 647 IAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGI 706

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V +  L+ +  R+    K +E+L  M +  V+P
Sbjct: 707 TPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLP 743



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 130/244 (53%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I G CK+G V+K   L  +MK  N+ P++V+Y+SL HG C     + +  +
Sbjct: 358 PDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDI 417

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F ++   G + D   +++++   C    +D A +L++ M++  + PD         +  L
Sbjct: 418 FRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDP------SNFESL 471

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK+G   NA E    +   G++P++ T N+ I A C + ++++A +L  +M+ +G+
Sbjct: 472 VHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGI 531

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN   +  ++    ++ ++ + +EL   M KRNV+P   + S ++D   K   S  ++ 
Sbjct: 532 FPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALM 591

Query: 254 QFNR 257
            + R
Sbjct: 592 LYAR 595



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   + +++ G CK G    A E F  M +  I P++ T N +I   C      EA  L
Sbjct: 463 PDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNL 522

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G+  ++ T+N +++ LCK RK + A  L  LM++  V P      ++V Y  L
Sbjct: 523 MNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLP------SVVVYSTL 576

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K    + A  L   + + G+ P++V Y I I+ LC+  +M +A++LF  M   G+
Sbjct: 577 IDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGM 636

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+ + +T+++  F R  +  K   L   M +R  +P     + +VD
Sbjct: 637 TPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVD 683



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+Y+++  GLCK+   D + ++F  +       +   Y+ LI GFC   D + A  
Sbjct: 392 EPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHK 451

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+   L  D   F  ++   CK      A    ++M++GG+ P      +I     
Sbjct: 452 LMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILP------SIATCNV 505

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID  C+ G+++ A  L   +   G+ PN+ TYN  I+ LC + + ++A +LF  M  + 
Sbjct: 506 IIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRN 565

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           V P+ V+++TL+  F +++ + K + L   M K  V P     +I++++L
Sbjct: 566 VLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINIL 615



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 112/240 (46%), Gaps = 12/240 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + + ++ +I        ++ A ++FLQ K   +  +  + N L+     AN       LF
Sbjct: 178 SVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLF 237

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNR------KMDEATRLLDLMIQGGVRPDAFCEINIV 128
            EM   G   +V T+ ++M+  CK           +AT +L+ M + G  P       +V
Sbjct: 238 EEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESP------TVV 291

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y   I GLC++G +++A +  +SL  A  + NV  YN  IH LC   ++D+A  +  +M
Sbjct: 292 TYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEM 351

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
           +  G++P+   ++ L+  F ++ +  K + L+  M   N+ P     S +   L K  +S
Sbjct: 352 KSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLS 411



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 7/134 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ ++Y ++I G C+ G + KA  LF +M      P VVTY SL+ G+C  N  + A+ L
Sbjct: 638 PDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADML 697

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G+  DVVT+NV++    +   +D+A  +L+ M + GV PD    +       +
Sbjct: 698 IDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYM-------M 750

Query: 134 IDGLCKIGKLKNAR 147
           ++ L K  KLK  R
Sbjct: 751 LEWLLKAKKLKTRR 764


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 16/229 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+ID LCK G V+ A   F QM DE + P+ + YNSLIH  C  +   +AE L
Sbjct: 289 PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+EM+DRG+    + FN I+D  CK  ++ E+ +L DLM++ GV+PD             
Sbjct: 349 FLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD------------- 395

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
              +  +G+   A++L  + +  GL+PN  TY +    +     +++   LFL ME  G 
Sbjct: 396 ---IITLGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGC 452

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             +  +   ++   +++ E ++    L  +D+++    AS  S+ +DLL
Sbjct: 453 TVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 501



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            PN VTYN+II  LCK   VDKA E+   M    + P+ +TYNS++HGFC +    EA  
Sbjct: 113 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 172

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++PD      I  YG 
Sbjct: 173 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD------ITTYGT 226

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G    G L     L   + R G+ PN   ++I + A    E++++A  +F  M  +G
Sbjct: 227 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQG 286

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V + T++    +       +     M    + P
Sbjct: 287 LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP 324



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 15/235 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y+T+I+G  KEG +DK       M D+ I+PNVVTYNS+I   C A   ++A 
Sbjct: 84  CPPDVVSYSTVINGFFKEGDLDK-------MLDQRISPNVVTYNSIIAALCKAQTVDKAM 136

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G+  D +T+N I+   C + +  EA   L  M   GV PD      +V Y 
Sbjct: 137 EVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPD------VVTYN 190

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK G+   AR++  S+T+ GL P++ TY   +        + + H L LD+ V+
Sbjct: 191 SLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGL-LDLMVR 249

Query: 192 -GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P A     ++D+L K+
Sbjct: 250 NGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKS 304



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 129/248 (52%), Gaps = 15/248 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNEAE 71
           P+  +YN +++GLC E    +A EL   M D+  +  P+VV+Y+++I+GF    D ++  
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK-- 106

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+D+ +  +VVT+N I+  LCK + +D+A  +L  M++ GV PD       + Y 
Sbjct: 107 -----MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDC------MTYN 155

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ G C  G+ K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M  +
Sbjct: 156 SIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 215

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ P+   + TL+  +  K    ++  LL  M +  + P   + SI+V    K E    +
Sbjct: 216 GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 275

Query: 252 IPQFNRQK 259
           +  F++ +
Sbjct: 276 MLVFSKMR 283



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 129/299 (43%), Gaps = 71/299 (23%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG----- 67
           +P+ VTYN+++D LCK G   +A+++F  M    + P++ TY +L+ G  YA  G     
Sbjct: 183 EPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQG--YATKGALVEM 240

Query: 68  --------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDE 95
                                            EA  +F +M  +GL  + VT+  ++D 
Sbjct: 241 HGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDV 300

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           LCK+ ++++A    + MI  G+RPD+      + Y  LI  LC   K + A EL   +  
Sbjct: 301 LCKSGRVEDAMLYFEQMIDEGLRPDS------IVYNSLIHSLCIFDKWEKAEELFLEMLD 354

Query: 156 AGLMPNVVTYNITIHALCNDEQM-------------------------DKAHDLFLDMEV 190
            G+  + + +N  I + C + ++                         D+A DLF+    
Sbjct: 355 RGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRNDEAKDLFVAFSS 414

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
            G+ PN   +  +  + I +    ++ +L  SM+       + +L+ IV +LL + EI+
Sbjct: 415 NGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 473



 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 12/100 (12%)

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG--VAPNCVIFT 201
           ++AR +   L R G+ P+V +YNI ++ LC++ +  +A +L   M   G    P+ V ++
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 202 TLMPSFIRKNETSKVIELLRSMDKR---NVMPYASILSII 238
           T++  F ++ +  K+      +D+R   NV+ Y SI++ +
Sbjct: 93  TVINGFFKEGDLDKM------LDQRISPNVVTYNSIIAAL 126


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 8/234 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G V  P     +++++GL ++G V  A +L  ++K     P++  YN+LI+  C    
Sbjct: 324 ELGFV--PTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGK 381

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            +EAE LF EM ++GL ++ VT+++++D  C+  K+D A   L  MI  G++      I 
Sbjct: 382 FDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIK------IT 435

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LI+G CK+G L  A      +   GL P VV+Y   I   CN  ++ +A  L+ 
Sbjct: 436 VYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYH 495

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +M  KG+APN   FTTL+ +  R N  +    L   M ++N+MP     +++++
Sbjct: 496 EMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIE 549



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR   V   P+   YN +I+ LCK+G  D+A+ LF +M ++ +  N VTY+ LI  FC  
Sbjct: 355 NRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRR 414

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              + A +   +M+  G++  V  +N +++  CK   +  A    D MI  G++P     
Sbjct: 415 GKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKP----- 469

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             +V+Y  LI G C  GKL  A  L   +T  G+ PN  T+   I AL    +M  A  L
Sbjct: 470 -TVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRL 528

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           F +M  + + PN V +  ++    ++  T K  ELL  M ++ ++P
Sbjct: 529 FDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVP 574



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  V+Y ++I G C +G + +A  L+ +M  + I PN  T+ +LI     AN   +A  
Sbjct: 468 KPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFR 527

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+++ +  + VT+NV+++  CK     +A  LL+ M+Q G+ PD +       Y  
Sbjct: 528 LFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTY------TYRP 581

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC  G++  A++    L R     N + Y+  +H  C + ++  A  +  +M  +G
Sbjct: 582 LISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRG 641

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V  + V +  L+   I++ +TS V  LL++M  + + P   I + ++D
Sbjct: 642 VDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMID 689



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 7/203 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T+I+ LCK G +DKA+ L+ +M   N  PN VTY   +          +A 
Sbjct: 712 CTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAV 771

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ +GL ++ V++N+++   CK  +++EAT+LLD MI   + PD       + Y 
Sbjct: 772 QLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDC------ITYS 824

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I   C+ G L  A E   ++   GL P+ + YN  I+  C   ++ KA +L  DM  +
Sbjct: 825 TIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRR 884

Query: 192 GVAPNCVIFTTLMPSFIRKNETS 214
           GV PN     +L     RK   S
Sbjct: 885 GVKPNQATHKSLSHGASRKFSIS 907



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y ++IDG  K G V KA  ++  M DE   PN+VTY +LI+  C A   ++AE 
Sbjct: 678 RPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAEL 737

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+      + VT+   +D L +   M++A +L + M++G +        N V+Y  
Sbjct: 738 LWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLL-------ANTVSYNI 790

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G CK+G+++ A +L   +    + P+ +TY+  I+  C    +D A + +  M  KG
Sbjct: 791 LVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKG 850

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+ + +  L+       E  K  EL   M +R V P
Sbjct: 851 LKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKP 888



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K     YN++I+G CK G +  A   F +M D+ + P VV+Y SLI G+C     +EA  
Sbjct: 433 KITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFR 492

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM  +G+  +  TF  ++  L +  +M +A RL D M++  + P      N V Y  
Sbjct: 493 LYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMP------NEVTYNV 546

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G CK G    A EL   + + GL+P+  TY   I +LC+  ++ +A     D+  + 
Sbjct: 547 MIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREH 606

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              N + ++ L+  + ++      + + R M KR V       ++++D  +K +
Sbjct: 607 FKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQ 660



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 7/214 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +IDG  KE        L   M D+ + P+ V Y S+I G+  A    +A  ++  
Sbjct: 647 VCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDI 706

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+D G   ++VT+  +++ELCK   MD+A  L   M+     P      N V Y C +D 
Sbjct: 707 MIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTP------NHVTYCCFLDH 760

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           L + G ++ A +L   + + GL+ N V+YNI +   C   ++++A  L  +M    + P+
Sbjct: 761 LAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPD 819

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           C+ ++T++    R+      IE   +M  + + P
Sbjct: 820 CITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKP 853



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 122/257 (47%), Gaps = 39/257 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   T   +++GL K   VD    LF ++    I P++  Y ++I  FC   +  +A+  
Sbjct: 191 PQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAK-- 248

Query: 74  FIEMMDRGLQSD--VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------------ 119
             EM+ R   SD  VV +NV++  LCKN+++ EA  + + +IQ G+              
Sbjct: 249 --EMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGL 306

Query: 120 -------------DAFCEINIV----AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                        D   E+  V    A   L++GL + GK+ +A +L   + + G MP++
Sbjct: 307 CKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSL 366

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
             YN  I++LC D + D+A  LF +M  KG+  N V ++ L+ SF R+ +    I  L  
Sbjct: 367 FVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGK 426

Query: 223 M----DKRNVMPYASIL 235
           M     K  V PY S++
Sbjct: 427 MIMAGIKITVYPYNSLI 443



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 103/231 (44%), Gaps = 8/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +++ ++ +I    +E  +  +  +F  M+   + P V T   +++G       +    LF
Sbjct: 157 SSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLF 216

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            E++  G++ D+  +  ++   C+ +   +A  ++  M           ++N+V Y  LI
Sbjct: 217 GEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESS--------DLNVVVYNVLI 268

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLCK  ++  A E+   L + GL  + VTY   +  LC  ++ +    +  +M   G  
Sbjct: 269 HGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFV 328

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P     ++L+    RK +     +L+  + K   MP   + + +++ L K+
Sbjct: 329 PTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKD 379



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 8/206 (3%)

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           ++ LI  +       ++  +F  M    L   V T   +++ L K R++D    L   ++
Sbjct: 161 FDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEIL 220

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             G+RPD      I  Y  +I   C++     A+E+ Q +  + L  NVV YN+ IH LC
Sbjct: 221 SMGIRPD------IYIYVAVIRSFCELKNFAKAKEMIQRMESSDL--NVVVYNVLIHGLC 272

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            ++++ +A ++   +  KG+  + V + TL+    +  E      ++  M +   +P  +
Sbjct: 273 KNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEA 332

Query: 234 ILSIIVDLLVKNEISLNSIPQFNRQK 259
            LS +V+ L +    +++    NR K
Sbjct: 333 ALSSLVEGLRRKGKVVDAFDLVNRVK 358


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +T+N II+GLC++G + +  E+ ++M  +   P+ VTYN+L++G+C   + ++A  
Sbjct: 50  EPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALV 109

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+  GL  +VVT+  +++ +CK   ++ A    D M   G+ P      N   Y  
Sbjct: 110 LHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCP------NERTYTT 163

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G  + G L  A  +   +TR+G +P++VTYN  I+  C   +M++A  L  DM  KG
Sbjct: 164 IINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG 223

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           V P+ V ++T++  F R  E  +  ++   M  ++V+P A   S ++  L
Sbjct: 224 VLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGL 273



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 126/235 (53%), Gaps = 6/235 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY ++I+ +CK G +++A E F QM    + PN  TY ++I+GF      +EA  +
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   G    +VT+N +++  C   +M+EA  LL  M+  GV PD      +V+Y  +
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPD------VVSYSTI 234

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G  +  +L  A ++   +    ++P+ VTY+  I  LC   ++ +A D+F +M    +
Sbjct: 235 ISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKL 294

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            P+   +TTL+ ++ ++ + +K + L   M ++  +P A   +++++ L K   S
Sbjct: 295 PPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARS 349



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY TII+G  ++G +D+A  +  +M      P++VTYN+LI+G C      EA  L
Sbjct: 156 PNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGL 215

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ +G+  DVV+++ I+    +N+++D A ++   MI   V PDA      V Y  L
Sbjct: 216 LQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDA------VTYSSL 269

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+  +L  A ++ Q +    L P+  TY   I+A C +  ++KA  L  +M  KG 
Sbjct: 270 IQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGF 329

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+ V +  L+    ++  + +   LL  +   + +P A   + +++
Sbjct: 330 LPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIE 376



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
            F +M+     PNVVTYN++I G+C     +EA      M  +GL+ +++TFN+I++ LC
Sbjct: 5   FFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLC 64

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           ++ ++ E + +L  M + G  PD       V Y  L++G CK G    A  L   + R G
Sbjct: 65  RDGRLKETSEVLVEMSRKGYVPDE------VTYNTLVNGYCKEGNFHQALVLHAEMVRNG 118

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L PNVVTY   I+++C    +++A + F  M V+G+ PN   +TT++  F ++    +  
Sbjct: 119 LSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAY 178

Query: 218 ELLRSMDKRNVMP 230
            +L  M +   +P
Sbjct: 179 RVLNEMTRSGFIP 191



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 22/247 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y+TII G  +   +D+A ++ ++M  +++ P+ VTY+SLI G C      EA  +
Sbjct: 226 PDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDM 285

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+   L  D  T+  +++  CK   +++A  L D MIQ G  PDA      V Y  L
Sbjct: 286 FQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDA------VTYNVL 339

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE---------------QM 178
           I+GL K  + K AR L   L     +P+ VTYN  I   CN E                M
Sbjct: 340 INGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLM 399

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA-SILSI 237
           D+A  +F  M  K   PN  I+  ++    R     K  +L + M   + +P+  ++L++
Sbjct: 400 DEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLAL 459

Query: 238 IVDLLVK 244
           +  L  +
Sbjct: 460 VKALFTE 466



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 13/222 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+++I GLC++  + +A ++F +M    + P+  TY +LI+ +C   D N+A +L
Sbjct: 261 PDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHL 320

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------CE 124
             EM+ +G   D VT+NV+++ L K  +  EA RLL  +      P A          C 
Sbjct: 321 HDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCN 380

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           I   +   L+ G C  G +  A ++ +S+      PN   YN+ IH  C    + KA+ L
Sbjct: 381 IEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKL 440

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRK---NETSKVI-ELLRS 222
           + +M      P+ V    L+ +   +    E ++VI ++LRS
Sbjct: 441 YKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILRS 482



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   YN II G C+ G V KA +L+ +M   +  P+ VT  +L+          E   
Sbjct: 415 KPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNE 474

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +  +++     +D     V+++   K   MD    LL  M + G+ P      N +A G
Sbjct: 475 VIGDILRSCKLTDAELSKVLVEINQKEGNMDMVFNLLTEMAKDGLIPSTGTPTNAIARG 533


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 137/271 (50%), Gaps = 43/271 (15%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF----- 61
           EFG+   PN V Y T+IDG CK+G V  AK LF +M    + PN  TY+ L++GF     
Sbjct: 186 EFGL--SPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGL 243

Query: 62  ------------------------C----YANDG--NEAEYLFIEMMDRGLQSDVVTFNV 91
                                   C    Y NDG  ++A  +F EM ++G+   V+T+N+
Sbjct: 244 QREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNI 303

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++  LC+ +K  EA +L+  + + G+ P      NIV Y  LI+G C + K+ +A  L  
Sbjct: 304 LIGGLCRGKKFGEAVKLVHKVNKVGLSP------NIVTYNILINGFCDVRKMDSAVRLFN 357

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            L  +GL P +VTYN  I      E +  A DL  +ME + +AP+ V +T L+ +F R N
Sbjct: 358 QLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLN 417

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            T K  E+   M+K  ++P     S+++  L
Sbjct: 418 HTEKACEMHSLMEKSGLVPDVYTYSVLLHGL 448



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 130/270 (48%), Gaps = 31/270 (11%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +  G+V  PN   YN +I   C +G VDKA ++F +M+++ I   V+TYN LI G C   
Sbjct: 255 KRSGIV--PNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGK 312

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA  L  ++   GL  ++VT+N++++  C  RKMD A RL + +   G+ P      
Sbjct: 313 KFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYN 372

Query: 126 NIVA-----------------------------YGCLIDGLCKIGKLKNARELSQSLTRA 156
            ++A                             Y  LID   ++   + A E+   + ++
Sbjct: 373 TLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKS 432

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL+P+V TY++ +H LC    M +A  LF  +    + PN VI+ T++  + ++  + + 
Sbjct: 433 GLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRA 492

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + LL  M +  ++P  +     + LL ++E
Sbjct: 493 LRLLNEMVQSGMVPNVASFCSTIGLLCRDE 522



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN +I+G C    +D A  LF Q+K   ++P +VTYN+LI G+    +   A  L
Sbjct: 331 PNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDL 390

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +R +    VT+ +++D   +    ++A  +  LM + G+ PD +       Y  L
Sbjct: 391 VKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVY------TYSVL 444

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC  G +K A +L +SL    L PN V YN  IH  C +    +A  L  +M   G+
Sbjct: 445 LHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGM 504

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            PN   F + +    R  +  +   LL  M    + P  S+  ++
Sbjct: 505 VPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  +ID   +    +KA E+   M+   + P+V TY+ L+HG C   +  EA  L
Sbjct: 401 PSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKL 460

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  + +  LQ + V +N ++   CK      A RLL+ M+Q G+ P      N+ ++   
Sbjct: 461 FKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVP------NVASFCST 514

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           I  LC+  K K A  L   +  +GL P+V  Y + +H +  D
Sbjct: 515 IGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKM-VHKVKGD 555



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 115/264 (43%), Gaps = 42/264 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C   T  Y+T+++        D+A      M  E   P   T+N+L+     +N  ++A 
Sbjct: 85  CSTYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAW 144

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           ++F E+  + +  D  +F +++   C+     +  RLL ++ + G+ P      N+V Y 
Sbjct: 145 WIFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSP------NVVIYT 197

Query: 132 CLIDGLCKIGKLKNAR-----------------------------------ELSQSLTRA 156
            LIDG CK G +  A+                                   ++ +++ R+
Sbjct: 198 TLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRS 257

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G++PN   YN  I   CND  +DKA  +F +M  KG+A   + +  L+    R  +  + 
Sbjct: 258 GIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEA 317

Query: 217 IELLRSMDKRNVMPYASILSIIVD 240
           ++L+  ++K  + P     +I+++
Sbjct: 318 VKLVHKVNKVGLSPNIVTYNILIN 341



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 10/199 (5%)

Query: 37  ELFLQMKDENINP---NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
            L LQ+   +  P       Y+++++ + +++  ++A      M+  G      TFN ++
Sbjct: 72  SLMLQLTQAHFTPCSTYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLL 131

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
             L ++   D+A  + +  ++  V  DA+      ++G +I G C+ G       L   L
Sbjct: 132 CLLIRSNYFDKAWWIFN-ELKSKVVLDAY------SFGIMIKGCCEAGYFVKGFRLLAML 184

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              GL PNVV Y   I   C D  +  A +LF  M   G+ PN   ++ LM  F ++   
Sbjct: 185 EEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQ 244

Query: 214 SKVIELLRSMDKRNVMPYA 232
            +  ++  +M +  ++P A
Sbjct: 245 REGFQMYENMKRSGIVPNA 263



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN+V YNT+I G CKEG   +A  L  +M    + PNV ++ S I   C      EAE 
Sbjct: 470 QPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAEL 529

Query: 73  LFIEMMDRGLQSDVVTFNVI 92
           L  +M++ GL+  V  + ++
Sbjct: 530 LLGQMINSGLKPSVSLYKMV 549


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ GV  KP+ VTY T+I  LC+ G +D A E F QM D+ + P+   YN LI GFC
Sbjct: 418 NEMRDHGV--KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 475

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 +A+ L  E+M+ G+  D+V F+ I++ LCK  ++ +A  + DL +  G+ PDA 
Sbjct: 476 THGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA- 534

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                V Y  L+DG C +GK++ A  +  ++  AG+ PNVV Y   ++  C   ++D+  
Sbjct: 535 -----VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 589

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF +M  +G+ P+ ++++ ++    +   T         M +  +       +I++  L
Sbjct: 590 SLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGL 649

Query: 243 VKNE 246
            KN 
Sbjct: 650 FKNR 653



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 121/259 (46%), Gaps = 41/259 (15%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---- 62
           E G VC PN V YNT+IDG  KEG V+KA +LF +M    I P++VTYNS++H  C    
Sbjct: 210 EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA 269

Query: 63  -----------------------------YANDGN--EAEYLFIEMMDRGLQSDVVTFNV 91
                                        Y++ G   EA  +F EM    +  DVVT ++
Sbjct: 270 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 329

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M  LCK  K+ EA  + D M   G  PD F      +Y  +++G    G L +  +L  
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVF------SYNIMLNGYATKGCLVDMTDLFD 383

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G+ P+  T+N+ I A  N   +DKA  +F +M   GV P+ V + T++ +  R  
Sbjct: 384 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 443

Query: 212 ETSKVIELLRSMDKRNVMP 230
           +    +E    M  + V P
Sbjct: 444 KMDDAMEKFNQMIDQGVAP 462



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y T+++G CK G +D+   LF +M    I P+ + Y+ +I G   A     A+ 
Sbjct: 566 EPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKV 625

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM + G+  D+ T+N+++  L KNR  DEA  L   +    V+      INI+    
Sbjct: 626 KFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVK------INIITLNT 679

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG+ +  +++ A++L  S++R+ L+P+VVTY+I I  L  +  +++A D+F  M+  G
Sbjct: 680 MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             PN  +   ++   ++KNE  +    L  +D+RN         ++VDL 
Sbjct: 740 CEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLF 789



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 136/274 (49%), Gaps = 33/274 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAE 71
           P+  +YN +++G   +G +    +LF  M  + I P+  T+N LI    YAN G  ++A 
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA--YANCGMLDKAM 414

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            +F EM D G++ DVVT+  ++  LC+  KMD+A    + MI  GV PD          F
Sbjct: 415 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 474

Query: 123 C--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C                     ++IV +  +I+ LCK+G++ +A+ +       GL P+ 
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 534

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V Y++ +   C   +M+KA  +F  M   G+ PN V++ TL+  + +     + + L R 
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFRE 594

Query: 223 MDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           M +R + P   + SII+D L +   ++ +  +F+
Sbjct: 595 MLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFH 628



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 2   ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           A G R    V  P + TY  ++D   +    + A   F Q+    +  N++  N L+ GF
Sbjct: 101 AQGPR----VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGF 156

Query: 62  CYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           C A   +EA + L     + G   DV ++++++  LC   K  +A  LL +M +GG    
Sbjct: 157 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG---- 212

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A C  N+VAY  +IDG  K G +  A +L + + + G+ P++VTYN  +HALC    MDK
Sbjct: 213 AVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDK 272

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A      M  K V PN   +  L+  +    +  + + + + M + +++P    LS+++ 
Sbjct: 273 AEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 332

Query: 241 LLVK 244
            L K
Sbjct: 333 SLCK 336



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 118/235 (50%), Gaps = 7/235 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y+ ++DG C  G ++KA  +F  M    I PNVV Y +L++G+C     +E   L
Sbjct: 532 PDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSL 591

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ RG++   + +++I+D L +  +   A      M + G+  D  C  NIV     
Sbjct: 592 FREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMD-ICTYNIV----- 645

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GL K      A  L + L    +  N++T N  I  +    ++++A DLF  +    +
Sbjct: 646 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRL 705

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEI 247
            P+ V ++ ++ + I++    +  ++  SM      P + +L+ +V +LL KNEI
Sbjct: 706 VPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEI 760



 Score = 40.4 bits (93), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 45/96 (46%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+ +I  L KEG V++A+++F  M++    PN    N ++      N+   A   
Sbjct: 707 PSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAY 766

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
             ++ +R    + +T  +++D         E  R L
Sbjct: 767 LSKIDERNFSLEHLTTMLLVDLFSSKGTCREHIRFL 802


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K    T+N +I+ LCKEG + KAK+    M++  + PNVVTYN++IHG+C     
Sbjct: 228 FRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRV 287

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  +   M +RG++ D  T+  ++  +CK  K++EA+ +L+ M + G+ P A      
Sbjct: 288 EGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTA------ 341

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LIDG C  G L  A      + R  ++P V TYN+ IHAL  + +MD+A  +  D
Sbjct: 342 VTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKD 401

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           M   G+ P+ + +  L+  + R     K   L   M  + + P    Y S++ ++
Sbjct: 402 MGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVL 456



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYN +I  L  EG +D+A  +   M D  I P+ +TYN LI+G+C   +  +A  L
Sbjct: 374 PTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNL 433

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +G+Q  +VT+  ++  L K  +M  A  L + +I+ G  PD      ++ +  L
Sbjct: 434 HDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPD------LIMFNAL 487

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  G L  A  L + + +  ++P+ VTYN  +   C + ++++A +L  +M+ +G+
Sbjct: 488 IDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGI 547

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+ + + TL+  + ++ + +    +   M      P     + ++  L KN+
Sbjct: 548 RPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQ 600



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 8/222 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+V  P+++TYN +I+G C+ G   KA  L  +M  + I P +VTY SLI+     N   
Sbjct: 406 GIV--PDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMK 463

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A+ LF +++  G   D++ FN ++D  C N  +D A  LL  M +  + PD       V
Sbjct: 464 AADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDE------V 517

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G C+ GK++ AREL + + R G+ P+ ++YN  I        ++ A  +  +M
Sbjct: 518 TYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEM 577

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              G  P  + +  L+    +  +     ELL+ M  + + P
Sbjct: 578 LSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITP 619



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 108/204 (52%), Gaps = 6/204 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTY ++I  L K   +  A +LF ++  E  +P+++ +N+LI G C   + + A  
Sbjct: 443 QPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFA 502

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  R +  D VT+N +M   C+  K++EA  LL  M + G+RPD       ++Y  
Sbjct: 503 LLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDH------ISYNT 556

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K G + +A  +   +   G  P ++TYN  I  LC ++Q D A +L  +M  KG
Sbjct: 557 LISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKG 616

Query: 193 VAPNCVIFTTLMPSFIRKNETSKV 216
           + P+   + +L+    + +++S+ 
Sbjct: 617 ITPDDSTYFSLIEGIGKVDDSSEA 640



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +++ ++ +I   C+    D A E F  MK++ + P + T+N+++  F   N       L+
Sbjct: 165 SSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLY 224

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM    ++S V TFN++++ LCK  K+ +A   +  M   GV+P      N+V Y  +I
Sbjct: 225 AEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKP------NVVTYNTVI 278

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C  G+++ AR +   +   G+ P+  TY   I  +C   ++++A  +   M+  G+ 
Sbjct: 279 HGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLL 338

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           P  V + TL+  +  K +  K       M +R ++P  S  ++++  L
Sbjct: 339 PTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHAL 386



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 18/160 (11%)

Query: 2   ANGN--REFGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVV 52
           ANGN  R F ++ +       P+ VTYNT++ G C+EG V++A+EL  +MK   I P+ +
Sbjct: 493 ANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHI 552

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           +YN+LI G+    D N+A  +  EM+  G    ++T+N ++  LCKN++ D A  LL  M
Sbjct: 553 SYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEM 612

Query: 113 IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +  G+ PD         Y  LI+G   IGK+ ++ E S S
Sbjct: 613 VSKGITPDD------STYFSLIEG---IGKVDDSSEASDS 643



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 8/235 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E GVV  P   T+N ++    K    +    L+ +M    I   V T+N +I+  C   
Sbjct: 193 KEKGVV--PKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEG 250

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A+     M + G++ +VVT+N ++   C   +++ A  +LD+M   GV PD++   
Sbjct: 251 KLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSY--- 307

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               YG LI G+CK GKL+ A  + + +   GL+P  VTYN  I   CN   + KA    
Sbjct: 308 ---TYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYR 364

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +M  + + P    +  L+ +   + +  +   +++ M    ++P +   +I+++
Sbjct: 365 DEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILIN 419



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
            EL+ +  R G   ++V +++ I A C  ++ D A + F  M+ KGV P    F  ++  
Sbjct: 152 HELAITRDRLGTKSSIV-FDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSL 210

Query: 207 FIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F++ N+T  V  L   M +  +       +I++++L K
Sbjct: 211 FLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCK 248


>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
          Length = 346

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 116/213 (54%), Gaps = 6/213 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            C+PN V+Y  ++  LC +   D+A  L   M+   +  +VVTY +LI G C A + ++A
Sbjct: 110 ACRPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKA 169

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  EM + G++ +VV ++ ++   CK+ + ++  ++   M + G+ PD      +V Y
Sbjct: 170 VELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD------VVMY 223

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LID LCK+GK K A  +   + R GL PNVVTYN+ I+ +C +  + +A  +   M  
Sbjct: 224 TGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSE 283

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           KGVAP+ V + TL+       E  + + LL  M
Sbjct: 284 KGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEM 316



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 121/239 (50%), Gaps = 13/239 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCYANDGNEAE 71
           + V+YNT++  LC+ G  D+A  L   M  E      PN V+Y  L+   C     ++A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAV 135

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M   G+++DVVT+  ++  LC   ++D+A  L+  M + G+ P      N+V Y 
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEP------NVVVYS 189

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G CK G+ ++  ++   ++  G+ P+VV Y   I +LC   +  KAH +   M  +
Sbjct: 190 SLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRR 249

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVDLLVKNE 246
           G+ PN V +  L+    ++    + I +L+ M ++ V P    Y +++  + D+L  +E
Sbjct: 250 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDE 308



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y  +ID LCK G   KA  +   M    + PNVVTYN LI+  C      EA  
Sbjct: 217 EPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIG 276

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           +  +M ++G+  DVVT+N ++  L    +MDEA  LL+ M++G
Sbjct: 277 VLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRG 319


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 129/232 (55%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I+GLCKEG +D A +LFL+M D  + PN VT+ +LI+G C     +    +
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+ +G++ DV+T+N +++ LCK   + EA +L+  M Q G++PD F       Y  L
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKF------TYTML 406

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L++A E+ + + + G+  + V +   I   C + Q+ +A     +M   G+
Sbjct: 407 IDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGI 466

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   +T ++  F +K +     +LL+ M     +P     +++++ L K 
Sbjct: 467 KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQ 518



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  V++NT+I+G CK G +D+   L   M +  + P+V TY+ LI+G C     ++A  
Sbjct: 257 RPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANK 316

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF+EM DRGL  + VTF  +++  C   + D    +   M++ GV+PD      ++ Y  
Sbjct: 317 LFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPD------VITYNT 370

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK+G L+ A++L   +T+ GL P+  TY + I   C +  ++ A ++  +M  +G
Sbjct: 371 LINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG 430

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V FT L+  F R+ +  +    LR M +  + P  +  ++++    K
Sbjct: 431 IELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCK 482



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYNT+I+GLCK G + +AK+L ++M    + P+  TY  LI G C   D   A  
Sbjct: 362 KPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALE 421

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  G++ D V F  ++   C+  ++ EA R L  M++ G++PD         Y  
Sbjct: 422 IRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDD------ATYTM 475

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G CK G +K   +L + +   G +P VVTYN+ ++ LC   QM  A+ L   M   G
Sbjct: 476 VIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLG 535

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           V P+ + +  L+    +        +L    +K  V  Y S  S+I DL
Sbjct: 536 VVPDDITYNILLEGHCKHGNREDFDKL--QSEKGLVQDYGSYTSLIGDL 582



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + ++ +++     G+   A + F  ++  N+     +   L       N  + A   + E
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE 215

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           ++D G   DV  FNV+M  LCK  K++EA  L   + + G+RP       +V++  LI+G
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRP------TVVSFNTLING 269

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK G L     L + +    + P+V TY++ I+ LC + Q+D A+ LFL+M  +G+ PN
Sbjct: 270 YCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPN 329

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V FTTL+            +E+ + M ++ V P     + +++ L K
Sbjct: 330 DVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCK 377


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 141/266 (53%), Gaps = 29/266 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN+I+DG  KEG +D A  ++ +M +  ++PNVVTY SLI+GFC +N  + A   
Sbjct: 607 PSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKT 666

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
             EM ++GL+ DV  ++ ++D  CK R M+ A  L   +++ G+ P+          F +
Sbjct: 667 RDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRD 726

Query: 125 IN--------------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           +N                    +  Y  LIDGL K G+L  A +L   +   G++P+++T
Sbjct: 727 LNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIIT 786

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           +++ ++ LCN  Q++ A  +  +M+ K + P+ +I+ TL+  + R+    +   L   M 
Sbjct: 787 FHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEML 846

Query: 225 KRNVMPYASILSIIVDLLVKNEISLN 250
            R ++P      I+++   K + SL+
Sbjct: 847 DRGLVPDDVTYDILINGKFKGDRSLS 872



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +I+G C  G ++KA EL+ QMK   I P+V   NSL+ G+  A    EA  L
Sbjct: 398 PNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKL 457

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E +D G+ +++ T+N++M  LCK  KMDEA  LLD M+  G+ P      N+V+Y  +
Sbjct: 458 FDEAVDCGV-ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVP------NVVSYNDM 510

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G +  A  +   +    L PNVVTY+I I         +KA DLF  M    +
Sbjct: 511 ILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNI 570

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           AP    F T++    +  + S+  + L++  +   +P     + IVD  +K
Sbjct: 571 APTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIK 621



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN ++  LCK G +D+A  L   M ++ + PNVV+YN +I G C   + + A  +F
Sbjct: 468 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 527

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M+ R L+ +VVT+++++D   K    ++A  L D M+   + P  F       +  +I
Sbjct: 528 SDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDF------TFNTII 581

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK+G++  AR+  ++    G +P+ +TYN  +     +  +D A  ++ +M   GV+
Sbjct: 582 NGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS 641

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           PN V +T+L+  F + N     ++    M ++ +    +  S ++D   K
Sbjct: 642 PNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCK 691



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 8/233 (3%)

Query: 13  KP-NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KP N V   +++ G C +G +D A  LF ++ ++ + PN VTY+ LI G C + +  +A 
Sbjct: 361 KPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKAS 420

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+ +M   G+   V   N ++    K    +EA++L D  +  GV        NI  Y 
Sbjct: 421 ELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV-------ANIFTYN 473

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++  LCK GK+  A  L  ++   G++PNVV+YN  I   C    MD A  +F DM  +
Sbjct: 474 IMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLAR 533

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + PN V ++ L+    +K ++ K ++L   M   N+ P     + I++ L K
Sbjct: 534 DLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCK 586



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY+ +IDG  K+G  +KA +LF QM   NI P   T+N++I+G C     +EA  
Sbjct: 536 KPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARD 595

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
                ++ G     +T+N I+D   K   +D A  +   M + GV P      N+V Y  
Sbjct: 596 KLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSP------NVVTYTS 649

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK  ++  A +    +   GL  +V  Y+  I   C    M+ A DLF ++   G
Sbjct: 650 LINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVG 709

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++PN +++ +++  F   N     +   + M    +       + ++D L+K
Sbjct: 710 LSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK 761



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 9/224 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T + ++    KEG V++A+E F + K+  +  +   Y+ +I   C   + N    L  EM
Sbjct: 262 TVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEM 321

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +RG      TF  ++        M EA RL + MI  G +P     +N+V    L+ G 
Sbjct: 322 KERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCG-KP-----MNLVVATSLMKGY 375

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G L +A  L   +T  GL PN VTY++ I   CN   ++KA +L+  M++ G+ P+ 
Sbjct: 376 CAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSV 435

Query: 198 VIFTTLMPSFIRK---NETSKVIELLRSMDKRNVMPYASILSII 238
               +L+  +++     E SK+ +        N+  Y  ++S +
Sbjct: 436 FNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWL 479



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N +++   +   ++ A + F  M  +++ P V   N L+      N   E   L+ +M+
Sbjct: 193 FNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMV 252

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
            RG+  D  T +V++    K  +++EA        + GV+ DA       AY  +I  +C
Sbjct: 253 LRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDA------GAYSIIIQAVC 306

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K        EL + +   G +P+  T+   I A      M +A  L  +M   G   N V
Sbjct: 307 KKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLV 366

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + T+LM  +  +      + L   + +  + P     S++++
Sbjct: 367 VATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIE 408



 Score = 37.7 bits (86), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 80/200 (40%), Gaps = 16/200 (8%)

Query: 61  FCYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD-EATRLLDLMIQGGVR 118
            C+ ND   A  Y       RG    V  + V++  L ++ +    A +LL+  + G   
Sbjct: 108 LCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSD 167

Query: 119 PDAFC--------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           P                  E++   +  L++   +  +++NA +   ++    ++P V  
Sbjct: 168 PSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPY 227

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
            NI + AL     + +  DL+  M ++G+  +      ++ + +++    +  E  R   
Sbjct: 228 MNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETK 287

Query: 225 KRNVMPYASILSIIVDLLVK 244
           +R V   A   SII+  + K
Sbjct: 288 ERGVKLDAGAYSIIIQAVCK 307


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 8/236 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           C PN VTY T+IDG CK G + +A +LF  L  +D +  PNVVT+N+LI G C A+    
Sbjct: 206 CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEH 265

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  +M  R L++D  T+  +MD LCK  +  E +R+ + M++ G  P      ++V 
Sbjct: 266 AFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNP------SVVT 319

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+   CK G L++A+++ +S+   G+ P+V TY + +  L  + ++  A + F  + 
Sbjct: 320 YTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKIL 379

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +   P  V+++ L+    +     + ++    M  R + P  +   ++V++L K 
Sbjct: 380 RERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKR 435



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 12/241 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDG 67
           G+ C P+ +T N +I+G C+   +DKA ELF +M K+  + P   TY ++I  +C  +  
Sbjct: 63  GIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRL 122

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR-LLDLMIQGGVRPDAFCEIN 126
           ++A  L  E       SDV+    +    CK +++DEA + LLD++ +   +PD      
Sbjct: 123 DQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPD------ 174

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF- 185
           IVA+  +I G CK G+++ A E+ ++L   G +PN VTY   I   C    + +A  LF 
Sbjct: 175 IVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK 234

Query: 186 -LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            L        PN V F  L+    + +      EL++ M  R++       + ++D L K
Sbjct: 235 VLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCK 294

Query: 245 N 245
            
Sbjct: 295 Q 295



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 119/235 (50%), Gaps = 5/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C  + +   ++  G CK   VD+A +L L M + ++  P++V +N +IHGFC A    EA
Sbjct: 135 CSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREA 194

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +   ++  G   + VT+  ++D  CK+  + EA +L  ++       D   E N+V +
Sbjct: 195 YEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSR----DHHAEPNVVTF 250

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GLCK  +L++A EL + +    L  +  TY   +  LC   +  +   +F +M  
Sbjct: 251 NALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLR 310

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +G  P+ V +TTL+ +  +        +++RSM  + + P  +  +++++ L +N
Sbjct: 311 EGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFEN 365



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 6/201 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT+N +I GLCK   ++ A EL  QMK  ++  +  TY +L+ G C     +E   
Sbjct: 244 EPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSR 303

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM+  G    VVT+  ++   CK   + +A +++  M+  G+ PD      +  Y  
Sbjct: 304 VFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPD------VTTYTV 357

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GL + GK++ A E  + + R    P  V Y+  +   C    +D+A   +++M  + 
Sbjct: 358 LLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRR 417

Query: 193 VAPNCVIFTTLMPSFIRKNET 213
           +AP+      L+    ++  T
Sbjct: 418 LAPDPATCKLLVEMLCKRGRT 438



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 6/167 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +T TY T++DGLCK+G   +   +F +M  E  NP+VVTY +L+H  C A    +A+ 
Sbjct: 279 RADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQ 338

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+ +G+  DV T+ V+++ L +N K+  AT   + +++    P A      V Y  
Sbjct: 339 VIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCA------VVYSA 392

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           L+ G CK   +  A +    +    L P+  T  + +  LC   + D
Sbjct: 393 LVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 133/296 (44%), Gaps = 64/296 (21%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TYN +++G+C+EG VD A E    +      PN V+YN ++ G C A    +AE
Sbjct: 222 CAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAE 281

Query: 72  YLFIEMMDRGLQSDVVTFNV-----------------------------------IMDEL 96
            L  EM  +G   +VVTFN+                                   I+   
Sbjct: 282 KLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAF 341

Query: 97  CKNRKMDEATRLLDLMIQGGVRPD---------AFC---EIN-----------------I 127
           CK +KMD A   ++LM+  G  PD         A C   E++                 +
Sbjct: 342 CKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVL 401

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           ++Y  +IDGL K GK K A EL   +   GL P+++TY+     LC ++++++A   F  
Sbjct: 402 ISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCK 461

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           ++  G+ PN V++  ++    ++ ET   I+L   M     MP  S  +I+++ L 
Sbjct: 462 VQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLT 517



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY  +++  CK     +A +L  +M+ +   P+++TYN +++G C     ++A 
Sbjct: 187 CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAI 246

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                +   G + + V++N+++  LC   + ++A +L+  M Q G  P      N+V + 
Sbjct: 247 EFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPP------NVVTFN 300

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G ++ A E+   + + G  PN ++YN  +HA C  ++MD+A      M  +
Sbjct: 301 MLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSR 360

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V + TL+ +  R  E    +ELL  +  +   P     + ++D L K
Sbjct: 361 GCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTK 413



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 6/182 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNT++  LC+ G VD A EL  Q+KD+   P +++YN++I G   A    EA 
Sbjct: 362 CYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEAL 421

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +GLQ D++T++ I   LC+  +++EA R    +   G+RP      N V Y 
Sbjct: 422 ELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRP------NTVLYN 475

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLCK  +  NA +L   +   G MPN  TY I I  L  +  + +A +L  ++  +
Sbjct: 476 AILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSR 535

Query: 192 GV 193
           GV
Sbjct: 536 GV 537



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+++YN I+   CK+  +D+A      M      P++V+YN+L+   C   + + A 
Sbjct: 327 CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAV 386

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  ++ D+G    ++++N ++D L K  K  EA  LL+ M+  G++PD      I+ Y 
Sbjct: 387 ELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPD------IITYS 440

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +  GLC+  +++ A      +   G+ PN V YN  +  LC   +   A DLF+ M   
Sbjct: 441 TISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISN 500

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   +T L+     +    +  ELL  +  R V+    I    + LL
Sbjct: 501 GCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVSKGLINKAAIRLL 551



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 18/242 (7%)

Query: 9   GVVCKPNTVTYNTI----IDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           GV   PN V +  +    + GL + G +++A  L   M     +       +LI   C +
Sbjct: 48  GVAASPNAVPHRAVSNDRLRGLVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCAS 107

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA  +         + DV+ +N ++   C   ++D A RL+  M    + PD++  
Sbjct: 108 GRTAEARRVLA-----ACEPDVMAYNAMVAGYCVTGQLDAARRLVADM---PMEPDSY-- 157

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                Y  LI GLC  G+  NA  +   + R G +P+VVTY I + A C      +A  L
Sbjct: 158 ----TYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKL 213

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +M  KG AP+ + +  ++    ++      IE L+S+      P     +I++  L  
Sbjct: 214 LDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCT 273

Query: 245 NE 246
            E
Sbjct: 274 AE 275


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 8/236 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           C PN VTY T+IDG CK G + +A +LF  L  +D +  PNVVT+N+LI G C A+    
Sbjct: 206 CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEH 265

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  +M  R L++D  T+  +MD LCK  +  E +R+ + M++ G  P      ++V 
Sbjct: 266 AFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNP------SVVT 319

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+   CK G L++A+++ +S+   G+ P+V TY + +  L  + ++  A + F  + 
Sbjct: 320 YTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKIL 379

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +   P  V+++ L+    +     + ++    M  R + P  +   ++V++L K 
Sbjct: 380 RERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKR 435



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 12/241 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDG 67
           G+ C P+ +T N +I+G C+   +DKA ELF +M K+  + P   TY ++I  +C  +  
Sbjct: 63  GIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRL 122

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR-LLDLMIQGGVRPDAFCEIN 126
           ++A  L  E       SDV+    +    CK +++DEA + LLD++ +   +PD      
Sbjct: 123 DQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPD------ 174

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF- 185
           IVA+  +I G CK G+++ A E+ ++L   G +PN VTY   I   C    + +A  LF 
Sbjct: 175 IVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK 234

Query: 186 -LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            L        PN V F  L+    + +      EL++ M  R++       + ++D L K
Sbjct: 235 VLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCK 294

Query: 245 N 245
            
Sbjct: 295 Q 295



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 119/235 (50%), Gaps = 5/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C  + +   ++  G CK   VD+A +L L M + ++  P++V +N +IHGFC A    EA
Sbjct: 135 CSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREA 194

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +   ++  G   + VT+  ++D  CK+  + EA +L  ++       D   E N+V +
Sbjct: 195 YEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSR----DHHAEPNVVTF 250

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GLCK  +L++A EL + +    L  +  TY   +  LC   +  +   +F +M  
Sbjct: 251 NALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLR 310

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +G  P+ V +TTL+ +  +        +++RSM  + + P  +  +++++ L +N
Sbjct: 311 EGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFEN 365



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 6/201 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT+N +I GLCK   ++ A EL  QMK  ++  +  TY +L+ G C     +E   
Sbjct: 244 EPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSR 303

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM+  G    VVT+  ++   CK   + +A +++  M+  G+ PD      +  Y  
Sbjct: 304 VFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPD------VTTYTV 357

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GL + GK++ A E  + + R    P  V Y+  +   C    +D+A   +++M  + 
Sbjct: 358 LLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRR 417

Query: 193 VAPNCVIFTTLMPSFIRKNET 213
           +AP+      L+    ++  T
Sbjct: 418 LAPDPATCKLLVEMLCKRGRT 438



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 6/167 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +T TY T++DGLCK+G   +   +F +M  E  NP+VVTY +L+H  C A    +A+ 
Sbjct: 279 RADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQ 338

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+ +G+  DV T+ V+++ L +N K+  AT   + +++    P A      V Y  
Sbjct: 339 VIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCA------VVYSA 392

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           L+ G CK   +  A +    +    L P+  T  + +  LC   + D
Sbjct: 393 LVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ GV  KP+ VTY T+I  LC+ G +D A E F QM D+ + P+   YN LI GFC
Sbjct: 431 NEMRDHGV--KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 488

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 +A+ L  E+M+ G+  D+V F+ I++ LCK  ++ +A  + DL +  G+ PDA 
Sbjct: 489 THGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA- 547

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                V Y  L+DG C +GK++ A  +  ++  AG+ PNVV Y   ++  C   ++D+  
Sbjct: 548 -----VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 602

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF +M  +G+ P+ ++++ ++    +   T         M +  +       +I++  L
Sbjct: 603 SLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 662

Query: 243 VKNE 246
            KN 
Sbjct: 663 FKNR 666



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 121/259 (46%), Gaps = 41/259 (15%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---- 62
           E G VC PN V YNT+IDG  KEG V+KA +LF +M    I P++VTYNS++H  C    
Sbjct: 223 EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA 282

Query: 63  -----------------------------YANDGN--EAEYLFIEMMDRGLQSDVVTFNV 91
                                        Y++ G   EA  +F EM    +  DVVT ++
Sbjct: 283 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 342

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M  LCK  K+ EA  + D M   G  PD F      +Y  +++G    G L +  +L  
Sbjct: 343 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVF------SYNIMLNGYATKGCLVDMTDLFD 396

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G+ P+  T+N+ I A  N   +DKA  +F +M   GV P+ V + T++ +  R  
Sbjct: 397 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 456

Query: 212 ETSKVIELLRSMDKRNVMP 230
           +    +E    M  + V P
Sbjct: 457 KMDDAMEKFNQMIDQGVAP 475



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y T+++G CK G +D+   LF +M    I P+ + Y+ +I G   A     A+ 
Sbjct: 579 EPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKM 638

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM + G+  D+ T+N+++  L KNR  DEA  L   +    V+      INI+    
Sbjct: 639 KFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVK------INIITLNT 692

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG+ +  +++ A++L  S++R+ L+PNVVTY+I I  L  +  +++A D+F  M+  G
Sbjct: 693 MIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 752

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             PN  +   ++   ++KNE  +    L  +D+RN         ++VDL 
Sbjct: 753 CEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLF 802



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 130/262 (49%), Gaps = 33/262 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAE 71
           P+  +YN +++G   +G +    +LF  M  + I P+  T+N LI    YAN G  ++A 
Sbjct: 370 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA--YANCGMLDKAM 427

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            +F EM D G++ DVVT+  ++  LC+  KMD+A    + MI  GV PD          F
Sbjct: 428 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 487

Query: 123 C--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C                     ++IV +  +I+ LCK+G++ +A+ +       GL P+ 
Sbjct: 488 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 547

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V Y++ +   C   +M+KA  +F  M   G+ PN V++ TL+  + +     + + L R 
Sbjct: 548 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFRE 607

Query: 223 MDKRNVMPYASILSIIVDLLVK 244
           M +R + P   + SII+D L +
Sbjct: 608 MLQRGIKPSTILYSIIIDGLFQ 629



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 2   ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           A G R    V  P + TY  ++D   +    + A   F Q+    +  N++  N L+ GF
Sbjct: 114 AQGPR----VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGF 169

Query: 62  CYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           C A   +EA + L     + G   DV ++++++  LC   K  +A  LL +M +GG    
Sbjct: 170 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG---- 225

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A C  N+VAY  +IDG  K G +  A +L + + + G+ P++VTYN  +HALC    MDK
Sbjct: 226 AVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDK 285

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A      M  K V PN   +  L+  +    +  + + + + M + +++P    LS+++ 
Sbjct: 286 AEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 345

Query: 241 LLVK 244
            L K
Sbjct: 346 SLCK 349



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 7/235 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y+ ++DG C  G ++KA  +F  M    I PNVV Y +L++G+C     +E   L
Sbjct: 545 PDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSL 604

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ RG++   + +++I+D L +  +   A      M + G+  D  C  NIV     
Sbjct: 605 FREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMD-ICTYNIV----- 658

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GL K      A  L + L    +  N++T N  I  +    ++++A DLF  +    +
Sbjct: 659 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRL 718

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEI 247
            PN V ++ ++ + I++    +  ++  SM      P + +L+ +V +LL KNEI
Sbjct: 719 VPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEI 773



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 45/96 (46%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +I  L KEG V++A+++F  M++    PN    N ++      N+   A   
Sbjct: 720 PNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAY 779

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
             ++ +R    + +T  +++D         E  R L
Sbjct: 780 LSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 815


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 6/221 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N   G   KPN + YNT+I GL  +G + +A +L  +M ++ + P V T+N L++G C  
Sbjct: 380 NEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKM 439

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++A+ L   M+ +G   D+ TFN+++       KM+ A  +LD+M+  GV PD +  
Sbjct: 440 GCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVY-- 497

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                Y  L++GLCK  K ++  E  +++   G  PN+ T+NI + +LC   ++DKA  L
Sbjct: 498 ----TYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGL 553

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
             +M+ K V P+ V F TL+  F +  +      L R M++
Sbjct: 554 LEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY ++IDGLC EG  ++A  LF +   + I PNV+ YN+LI G        EA  L
Sbjct: 354 PDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQL 413

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM ++GL  +V TFN++++ LCK   + +A  L+ +MI  G  PD F       +  L
Sbjct: 414 ASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIF------TFNIL 467

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G     K++NA E+   +   G+ P+V TYN  ++ LC   + +   + +  M  KG 
Sbjct: 468 IHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGC 527

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           APN   F  L+ S  R ++  K + LL  M  ++V P A     ++D   KN
Sbjct: 528 APNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T+N ++  LCK+G V + ++L  ++    + PN+ TYN  I G C   + + A  +   +
Sbjct: 218 TFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRL 277

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +D+G + DVVT+N ++  LCKN K  EA   L  ++  G+ PD+F       Y  LI G 
Sbjct: 278 IDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSF------TYNTLIAGY 331

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G ++ A  +  +    G +P+  TY   I  LC++ + ++A  LF +   KG+ PN 
Sbjct: 332 CKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +++ TL+     +    +  +L   M ++ ++P     +I+V+ L K
Sbjct: 392 ILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCK 438



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 108/226 (47%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN  I GLC++G +D A  +  ++ D+   P+VVTYN LI+G C  +   EAE  
Sbjct: 249 PNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVY 308

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++++ GL+ D  T+N ++   CK   +  A R+L   +  G  PD F       Y  L
Sbjct: 309 LGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEF------TYRSL 362

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLC  G+   A  L       G+ PNV+ YN  I  L N   + +A  L  +M  KG+
Sbjct: 363 IDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGL 422

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P    F  L+    +    S    L++ M  +   P     +I++
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 7/230 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N +I G   +  ++ A E+   M D  ++P+V TYNSL++G C  +   +    
Sbjct: 459 PDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMET 518

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  M+++G   ++ TFN++++ LC+  K+D+A  LL+ M    V PDA      V +G L
Sbjct: 519 YKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDA------VTFGTL 572

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMP-NVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           IDG CK G L  A  L + +    ++  +  TYNI IHA      +  A  LF +M  + 
Sbjct: 573 IDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           + P+   +  ++  F +        + L  M +   +P  + L  +++ L
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCL 682



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 41/233 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP---------------------- 49
           C+P   +YN I+  L   G+ D+A +++++M+D  I P                      
Sbjct: 107 CEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAAL 166

Query: 50  -------------NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                        NVV Y +++ GF   N  +E   LF +M+  G+   + TFN ++  L
Sbjct: 167 RLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVL 226

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK   + E  +LLD +I+ GV P      N+  Y   I GLC+ G+L  A  +   L   
Sbjct: 227 CKKGDVKECEKLLDKVIKRGVLP------NLFTYNFFIQGLCQKGELDAAVRMVGRLIDQ 280

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
           G  P+VVTYN  I+ LC + +  +A      +  +G+ P+   + TL+  + +
Sbjct: 281 GPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCK 333



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 7/188 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+N +++ LC+   +DKA  L  +MK++++NP+ VT+ +LI GFC   D + A 
Sbjct: 527 CAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAY 586

Query: 72  YLFIEMMDRGLQS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            LF +M +  + S    T+N+I+    +   +  A +L   M+   + PD +       Y
Sbjct: 587 TLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY------TY 640

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++DG CK G +    +    +   G +P++ T    I+ LC ++++ +A  +   M  
Sbjct: 641 RLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQ 700

Query: 191 KGVAPNCV 198
           KG+ P  V
Sbjct: 701 KGLVPEAV 708



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 41/212 (19%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           ++G V +A  +F +M   +  P V +YN+++     +   ++A  +++ M DRG+  DV 
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVY 147

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG----------- 136
           +F + M   C+  +   A RLL+ M   G      CE+N+VAY  ++ G           
Sbjct: 148 SFTIRMKSFCRTSRPHAALRLLNNMSSQG------CEMNVVAYCTVVGGFYEENFKDEGY 201

Query: 137 ------------------------LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
                                   LCK G +K   +L   + + G++PN+ TYN  I  L
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGL 261

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
           C   ++D A  +   +  +G  P+ V +  L+
Sbjct: 262 CQKGELDAAVRMVGRLIDQGPKPDVVTYNYLI 293



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 15/126 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  ++DG CK G VD   +  L+M +    P++ T   +I+  C  +   EA  +
Sbjct: 635 PDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGI 694

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL--DLMIQGGVRPDAFCEINIVAYG 131
              M+ +GL  + V  N I D    ++K   A +L+  DL+ +        C I   AY 
Sbjct: 695 IHRMVQKGLVPEAV--NTIFDH---DKKEVAAPKLVLEDLLKKS-------C-ITYYAYE 741

Query: 132 CLIDGL 137
            L DGL
Sbjct: 742 LLFDGL 747


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 8/244 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ GV  KP+ VTY T+I  LC+ G +D A E F QM D+ + P+   YN LI GFC
Sbjct: 421 NEMRDHGV--KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 478

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 +A+ L  E+M+ G+  D+V F+ I++ LCK  ++ +A  + DL +  G+ PDA 
Sbjct: 479 THGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA- 537

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                V Y  L+DG C +GK++ A  +  ++  AG+ PNVV Y   ++  C   ++D+  
Sbjct: 538 -----VVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 592

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF +M  +G+ P+ ++++ ++        T         M +  +       +I++  L
Sbjct: 593 SLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 652

Query: 243 VKNE 246
            KN 
Sbjct: 653 FKNR 656



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 121/259 (46%), Gaps = 41/259 (15%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---- 62
           E G VC PN V YNT+IDG  KEG V+KA +LF +M    I P++VTYNS++H  C    
Sbjct: 213 EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA 272

Query: 63  -----------------------------YANDGN--EAEYLFIEMMDRGLQSDVVTFNV 91
                                        Y++ G   EA  +F EM    +  DVVT ++
Sbjct: 273 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 332

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M  LCK  K+ EA  + D M   G  PD F      +Y  +++G    G L +  +L  
Sbjct: 333 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVF------SYNIMLNGYATKGCLVDMTDLFD 386

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G+ P+  T+N+ I A  N   +DKA  +F +M   GV P+ V + T++ +  R  
Sbjct: 387 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 446

Query: 212 ETSKVIELLRSMDKRNVMP 230
           +    +E    M  + V P
Sbjct: 447 KMDDAMEKFNQMIDQGVAP 465



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y T+++G CK G +D+   LF +M    I P+ + Y+ +I G   A     A+ 
Sbjct: 569 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKM 628

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM + G+  D+ T+N+++  L KNR  DEA  L   +    V+      INI+    
Sbjct: 629 KFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVK------INIITLNT 682

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG+ +  +++ A++L  S++R+ L+P+VVTY+I I  L  +  +++A D+F  M+  G
Sbjct: 683 MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 742

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             PN  +   ++   ++KNE  +    L  +D+RN         ++VDL 
Sbjct: 743 CEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLF 792



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 33/262 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAE 71
           P+  +YN +++G   +G +    +LF  M  + I P+  T+N LI    YAN G  ++A 
Sbjct: 360 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA--YANCGMLDKAM 417

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            +F EM D G++ DVVT+  ++  LC+  KMD+A    + MI  GV PD          F
Sbjct: 418 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 477

Query: 123 C--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C                     ++IV +  +I+ LCK+G++ +A+ +       GL P+ 
Sbjct: 478 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 537

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V YN+ +   C   +M+KA  +F  M   G+ PN V + TL+  + +     + + L R 
Sbjct: 538 VVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFRE 597

Query: 223 MDKRNVMPYASILSIIVDLLVK 244
           M +R + P   + SII+D L +
Sbjct: 598 MLQRGIKPSTILYSIIIDGLFE 619



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 2   ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           A G R    V  P + TY  ++D   +    + A   F Q+    +  N++  N L+ GF
Sbjct: 104 AQGPR----VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGF 159

Query: 62  CYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           C A   +EA + L     + G   DV ++++++  LC   K  +A  LL +M +GG    
Sbjct: 160 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG---- 215

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A C  N+VAY  +IDG  K G +  A +L + + + G+ P++VTYN  +HALC    MDK
Sbjct: 216 AVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDK 275

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A      M  K V PN   +  L+  +    +  + + + + M + +++P    LS+++ 
Sbjct: 276 AEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 335

Query: 241 LLVK 244
            L K
Sbjct: 336 SLCK 339



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 7/235 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V YN ++DG C  G ++KA  +F  M    I PNVV Y +L++G+C     +E   L
Sbjct: 535 PDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSL 594

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ RG++   + +++I+D L +  +   A      M + G+  D  C  NIV     
Sbjct: 595 FREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMD-ICTYNIV----- 648

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GL K      A  L + L    +  N++T N  I  +    ++++A DLF  +    +
Sbjct: 649 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRL 708

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEI 247
            P+ V ++ ++ + I++    +  ++  SM      P + +L+ +V +LL KNEI
Sbjct: 709 VPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEI 763



 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 45/96 (46%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+ +I  L KEG V++A+++F  M++    PN    N ++      N+   A   
Sbjct: 710 PSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAY 769

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
             ++ +R    + +T  +++D         E  R L
Sbjct: 770 LSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 805


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 130/232 (56%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY ++I+GLC EG V++A ELF + + + I P++V YNSL+ G C       A  +
Sbjct: 324 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV 383

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + G   D+ T+N++++ LCK   + +AT +++  I  G  PD F       +  L
Sbjct: 384 MNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF------TFNTL 437

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  KL +A +L + +   G+ P+ +TYN  ++ LC   ++++ ++ F +M +KG 
Sbjct: 438 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 497

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN + +  L+ +F R N+  +  +++  M +  + P A   + ++    +N
Sbjct: 498 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRN 549



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN+++ GLC +G +  A ++  +M +E  +P++ TYN +I+G C   + ++A  
Sbjct: 358 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 417

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  + + +G   DV TFN ++D  CK  K+D A +L++ M + G+ PD       + Y  
Sbjct: 418 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDT------ITYNS 471

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK GK+    E  Q +   G  PN +TYNI I   C   +M++A  + + M  +G
Sbjct: 472 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG 531

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V F TL+  F R  +      L + ++++     A   + ++
Sbjct: 532 LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLI 578



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+NT+IDG CK   +D A +L  +M +  I P+ +TYNS+++G C A   NE    
Sbjct: 429 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 488

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G   + +T+N++++  C++ KM+EA++++  M Q G+ PDA      V++  L
Sbjct: 489 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDA------VSFNTL 542

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G L+ A  L Q L   G      T+N  I A      M  A  +F +M  KG 
Sbjct: 543 IYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGH 602

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +   +  L+    +     +    L  M K+  +P  S    +++ L  N 
Sbjct: 603 RADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNH 655



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 13/239 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + +G R + V   P+ VTYNT+I GLCK+    +A     +M ++   P+  TYN++I G
Sbjct: 244 LVDGMRAYAV---PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDG 300

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +C  +   EA  L  + + +G   D VT+  +++ LC    ++ A  L +     G++PD
Sbjct: 301 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 360

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 IV Y  L+ GLC  G + +A ++   +   G  P++ TYNI I+ LC    +  
Sbjct: 361 ------IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISD 414

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           A  +  D  +KG  P+   F TL+  + ++ +    ++L+  M +  + P    Y S+L
Sbjct: 415 ATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 473



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   +N ++  LCK G V +A  L  ++    ++ N+ TYN  I G C A    EA  L
Sbjct: 185 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 244

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            ++ M      DVVT+N ++  LCK     EA   L  M+  G  PD F       Y  +
Sbjct: 245 -VDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDF------TYNTI 297

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CKI  ++ A EL +     G +P+ VTY   I+ LC +  +++A +LF + + KG+
Sbjct: 298 IDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI 357

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V++ +L+     +      ++++  M +    P     +I+++ L K
Sbjct: 358 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCK 408



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 7/215 (3%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
            V Y T++ GL   G    A++LF QM   ++ PN+  +N ++H  C   D  EA  L  
Sbjct: 152 AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLG 211

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           +++ RG+  ++ T+N+ +  LC+  ++ EA RL+D     G+R  A+   ++V Y  LI 
Sbjct: 212 KVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVD-----GMR--AYAVPDVVTYNTLIR 264

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLCK    + A    + +   G +P+  TYN  I   C    + +A +L  D   KG  P
Sbjct: 265 GLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVP 324

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + V + +L+     + +  + +EL      + + P
Sbjct: 325 DQVTYCSLINGLCAEGDVERALELFNEAQAKGIKP 359



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 6/187 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TYN +I+  C+   +++A ++ ++M  E ++P+ V++N+LI+GFC   D   A 
Sbjct: 497 CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAY 556

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF ++ ++G  +   TFN ++        M  A ++ D M+  G R D++       Y 
Sbjct: 557 LLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSY------TYR 610

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK   +  A      + + G +P++ T+   I++L  + ++ +A  +   M   
Sbjct: 611 VLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKI 670

Query: 192 GVAPNCV 198
           GV P  V
Sbjct: 671 GVVPEVV 677



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 109/251 (43%), Gaps = 38/251 (15%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC-------- 62
            C P    YN I+D L    + D+A +++++M    ++P++ T+   +  FC        
Sbjct: 81  ACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIA 140

Query: 63  ----------------------YAN-DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99
                                 YA+   ++A  LF +M+   +  ++  FN ++  LCK 
Sbjct: 141 LRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKR 200

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             + EA  LL  +IQ G+       IN+  Y   I GLC+ G+L  A  L   + RA  +
Sbjct: 201 GDVLEAGLLLGKVIQRGM------SINLFTYNIWIRGLCEAGRLPEAVRLVDGM-RAYAV 253

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+VVTYN  I  LC      +A      M  +G  P+   + T++  + + +   +  EL
Sbjct: 254 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 313

Query: 220 LRSMDKRNVMP 230
           L+    +  +P
Sbjct: 314 LKDAVFKGFVP 324



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 48/106 (45%)

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y   I    + G+L++A +  + +      P    YN  + AL +    D+AH +++ M 
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 113

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
             GV+P+    T  + SF         + LLR++  R  + Y +++
Sbjct: 114 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVV 159


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKEG +D+A ELF +M D  + PN VT+ +LIHG C     + A  
Sbjct: 203 QPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ +GL  D++T+N ++  LCK  ++ +   L+D MI  G++PD       ++Y  
Sbjct: 263 IYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDK------ISYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A EL   + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K ++    +LLR M +   +P
Sbjct: 377 LKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLP 414



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 123/224 (54%), Gaps = 10/224 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+LI+G+    D +E   L   M 
Sbjct: 139 FNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G Q DV T++++++ LCK  K+DEA  L + M+  G+ P      N V +  LI G C
Sbjct: 199 ASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVP------NGVTFTTLIHGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K  K+  A E+ + +   GL P+++TYN  I+ LC   ++ + HDL  +M + G+ P+ +
Sbjct: 253 KNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILSII 238
            +TTL+    ++ +    +EL   M + ++    + Y +++S +
Sbjct: 313 SYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCL 356



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK  +M  A  + D + + G+RP      ++V++  
Sbjct: 123 FYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  K+G L     L  ++  +G  P+V TY+I I+ LC + ++D+A++LF +M   G
Sbjct: 177 LINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +  +    +E+ + M  + + P
Sbjct: 237 LVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSP 274



 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I  LC+EG    A+++  +M    + P+  TY  +I+ FC   D   A  L  E
Sbjct: 347 VAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLRE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGPLPGVVT 418



 Score = 38.5 bits (88), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 8/163 (4%)

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR-PDAFCEINIVAYGCLIDGLCKIG 141
           +SD   F+ +M    ++  + +A +   L  Q  +R P   C         +++ L +  
Sbjct: 63  RSDFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRK-------VLEHLMEFR 115

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
             K   +  + +   G   ++  +NI +   C + +M  A  +F  +   G+ P+ V F 
Sbjct: 116 YFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFN 175

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           TL+  +I+  +  +   L  +M      P     SI+++ L K
Sbjct: 176 TLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCK 218


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 130/232 (56%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY ++I+GLC EG V++A ELF + + + I P++V YNSL+ G C       A  +
Sbjct: 323 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV 382

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + G   D+ T+N++++ LCK   + +AT +++  I  G  PD F       +  L
Sbjct: 383 MNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF------TFNTL 436

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  KL +A +L + +   G+ P+ +TYN  ++ LC   ++++ ++ F +M +KG 
Sbjct: 437 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 496

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN + +  L+ +F R N+  +  +++  M +  + P A   + ++    +N
Sbjct: 497 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRN 548



 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN+++ GLC +G +  A ++  +M +E  +P++ TYN +I+G C   + ++A  
Sbjct: 357 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 416

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  + + +G   DV TFN ++D  CK  K+D A +L++ M + G+ PD       + Y  
Sbjct: 417 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDT------ITYNS 470

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK GK+    E  Q +   G  PN +TYNI I   C   +M++A  + + M  +G
Sbjct: 471 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG 530

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V F TL+  F R  +      L + ++++     A   + ++
Sbjct: 531 LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLI 577



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+NT+IDG CK   +D A +L  +M +  I P+ +TYNS+++G C A   NE    
Sbjct: 428 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 487

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G   + +T+N++++  C++ KM+EA++++  M Q G+ PDA      V++  L
Sbjct: 488 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDA------VSFNTL 541

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G L+ A  L Q L   G      T+N  I A      M  A  +F +M  KG 
Sbjct: 542 IYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGH 601

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +   +  L+    +     +    L  M K+  +P  S    +++ L  N 
Sbjct: 602 RADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNH 654



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 13/239 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + +G R + V   P+ VTYNT+I GLCK+    +A     +M ++   P+  TYN++I G
Sbjct: 243 LVDGMRAYAV---PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDG 299

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +C  +   EA  L  + + +G   D VT+  +++ LC    ++ A  L +     G++PD
Sbjct: 300 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 359

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 IV Y  L+ GLC  G + +A ++   +   G  P++ TYNI I+ LC    +  
Sbjct: 360 ------IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISD 413

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           A  +  D  +KG  P+   F TL+  + ++ +    ++L+  M +  + P    Y S+L
Sbjct: 414 ATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 472



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 7/215 (3%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
            V Y T++ GL   G    A++LF QM   ++ PN+  +N ++H  C   D  EA  L  
Sbjct: 151 AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLG 210

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           +++ RG+  ++ T+N+ +  LC+  ++ EA RL+D     G+R  A+   ++V Y  LI 
Sbjct: 211 KVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVD-----GMR--AYAVPDVVTYNTLIR 263

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLCK    + A    + +   G +P+  TYN  I   C    + +A +L  D   KG  P
Sbjct: 264 GLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVP 323

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + V + +L+     + +  + +EL      + + P
Sbjct: 324 DQVTYCSLINGLCAEGDVERALELFNEAQAKGIKP 358



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   +N ++  LCK G V +A  L  ++    ++ N+ TYN  I G C A    EA  L
Sbjct: 184 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 243

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            ++ M      DVVT+N ++  LCK     EA   L  M+  G  PD F       Y  +
Sbjct: 244 -VDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDF------TYNTI 296

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CKI  ++ A EL +     G +P+ VTY   I+ LC +  +++A +LF + + KG+
Sbjct: 297 IDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI 356

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V++ +L+     +      ++++  M +    P     +I+++ L K
Sbjct: 357 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCK 407



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 6/187 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TYN +I+  C+   +++A ++ ++M  E ++P+ V++N+LI+GFC   D   A 
Sbjct: 496 CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAY 555

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF ++ ++G  +   TFN ++        M  A ++ D M+  G R D++       Y 
Sbjct: 556 LLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSY------TYR 609

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK   +  A      + + G +P++ T+   I++L  + ++ +A  +   M   
Sbjct: 610 VLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKI 669

Query: 192 GVAPNCV 198
           GV P  V
Sbjct: 670 GVVPEVV 676



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 109/251 (43%), Gaps = 38/251 (15%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC-------- 62
            C P    YN I+D L    + D+A +++++M    ++P++ T+   +  FC        
Sbjct: 80  ACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIA 139

Query: 63  ----------------------YAN-DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99
                                 YA+   ++A  LF +M+   +  ++  FN ++  LCK 
Sbjct: 140 LRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKR 199

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             + EA  LL  +IQ G+       IN+  Y   I GLC+ G+L  A  L   + RA  +
Sbjct: 200 GDVLEAGLLLGKVIQRGM------SINLFTYNIWIRGLCEAGRLPEAVRLVDGM-RAYAV 252

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+VVTYN  I  LC      +A      M  +G  P+   + T++  + + +   +  EL
Sbjct: 253 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 312

Query: 220 LRSMDKRNVMP 230
           L+    +  +P
Sbjct: 313 LKDAVFKGFVP 323



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 48/106 (45%)

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y   I    + G+L++A +  + +      P    YN  + AL +    D+AH +++ M 
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 112

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
             GV+P+    T  + SF         + LLR++  R  + Y +++
Sbjct: 113 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVV 158


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 135/268 (50%), Gaps = 25/268 (9%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P  VTY  +I    K   V +A ++F +M D    PN VTY +L+ G C A + ++
Sbjct: 352 VGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISK 411

Query: 70  AEYLFIEMM---------------DRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           A  ++ +++               DR  L  +VVT+  ++D LCK  K+D A  LLD M+
Sbjct: 412 AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 471

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             G      CE N + Y  LIDG CK GK+ +A+E+   +T+ G +P+V TY   I  + 
Sbjct: 472 SSG------CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 525

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            D ++D A  +   M      PN V +T ++    R  E+ K ++LL  M+++   P   
Sbjct: 526 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 585

Query: 234 ILSIIVDLLVKN---EISLNSIPQFNRQ 258
             + ++D L K    ++SL+   Q +R+
Sbjct: 586 TYTALIDGLGKAGKIDLSLDLFTQMSRK 613



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 22/248 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY+ +I  LC    V+KA  LF +MK   + P+V TY  LI  FC A    +A++L
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G    VVT+  ++    K +++ +A  +   M+  G RP      N V YG L
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRP------NDVTYGAL 399

Query: 134 IDGLCKIGKLKNARELSQSLT----------------RAGLMPNVVTYNITIHALCNDEQ 177
           +DGLCK G +  A E+   L                 R  L PNVVTY   +  LC   +
Sbjct: 400 VDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHK 459

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +D AH+L   M   G  PN +++  L+  F +  +     E+   M K   +P     + 
Sbjct: 460 VDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 519

Query: 238 IVDLLVKN 245
           ++D + K+
Sbjct: 520 LIDRMFKD 527



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 111/217 (51%), Gaps = 7/217 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++DGLCK   VD A EL   M      PN + Y++LI GFC A   + A+ +
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F++M   G    V T+  ++D + K+ ++D A ++L  M++    P      N+V Y  +
Sbjct: 502 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTP------NVVTYTAM 555

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLC+IG+ + A +L   +   G  PNVVTY   I  L    ++D + DLF  M  KG 
Sbjct: 556 IDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGC 615

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +PN V +  L+          K   LL  M K+   P
Sbjct: 616 SPNYVTYRVLINHLCAAGLLDKARLLLGEM-KQTYWP 651



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 6/246 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T++ G  K+  +   K +   M  E  NPN   +NSL+H +C   D   A 
Sbjct: 138 CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAY 197

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAY 130
            L   M   G     V +N+ +  +C   K+  +  LLDL  +  G    A C +N V  
Sbjct: 198 KLLNRMTTCGCPPGYVVYNIFIGSICGQEKL-PSPDLLDLAEKIYGEMLAANCVLNKVNV 256

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
                 LC +GK   A +L + + R G +P+  TY+  I  LC+  +++KA  LF +M++
Sbjct: 257 ANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM 316

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            GV P+   +T L+ SF +     +   L   M      P     + ++   +K +    
Sbjct: 317 VGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAK---- 372

Query: 251 SIPQFN 256
            +PQ N
Sbjct: 373 QVPQAN 378



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 35/240 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGLC+ G  +KA +L   M+++  +PNVVTY +LI G   A   + + 
Sbjct: 545 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM---------------IQGG 116
            LF +M  +G   + VT+ V+++ LC    +D+A  LL  M               IQG 
Sbjct: 605 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF 664

Query: 117 VRP-----------DAFCEINIV-AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
            +            +++  + I   YG LID   K G+L+ A EL + +     +P+ V 
Sbjct: 665 SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME---VPSSVK 721

Query: 165 -----YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
                Y   I ALC   Q+++A  L+ +M  +G  P   +F  L+   +   +  + ++L
Sbjct: 722 TDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 37/215 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGL K G +D + +LF QM  +  +PN VTY  LI+  C A   ++A 
Sbjct: 580 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKAR 639

Query: 72  YLFIEMMD--------------RGLQSDVVT-------------------FNVIMDELCK 98
            L  EM                +G     +                    + +++D   K
Sbjct: 640 LLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSK 699

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             +++ A  L   M++    P +    N + Y  LI  LC   +++ A  L   +TR G 
Sbjct: 700 AGRLEIAMELHKEMME---VPSSVKTDNDM-YASLIQALCLASQVEEAFRLYSEMTRRGF 755

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +P +  +   I  L   ++ D+A  L   +  +GV
Sbjct: 756 VPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGV 790



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 9/205 (4%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           +KD    P+ VTYN+L+     A   +    +  EM + G   D  T       LCK  +
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
             +A  +++       R D   +++ V    +I GL +      A      +     +PN
Sbjct: 91  WADALDMIE-------REDF--KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPN 141

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY   +      +Q+     +   M  +G  PN  +F +L+ S+  + + +   +LL 
Sbjct: 142 VVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLN 201

Query: 222 SMDKRNVMPYASILSIIVDLLVKNE 246
            M      P   + +I +  +   E
Sbjct: 202 RMTTCGCPPGYVVYNIFIGSICGQE 226


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN+II  LCK   VDKA E+   M    + P+ +TYNS++HGFC +    EA   
Sbjct: 114 PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 173

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++PD      I  YG L
Sbjct: 174 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD------ITTYGTL 227

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ PN   ++I + A    E++++A  +F  M  +G+
Sbjct: 228 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGL 287

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V + T++    +       +     M    + P
Sbjct: 288 NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP 324



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 15/235 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y+T+I+G  KEG +DK       M D+ I+PNVVTYNS+I   C A   ++A 
Sbjct: 84  CPPDVVSYSTVINGFFKEGDLDK-------MLDQRISPNVVTYNSIIAALCKAQTVDKAM 136

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G+  D +T+N I+   C + +  EA   L  M   GV PD      +V Y 
Sbjct: 137 EVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPD------VVTYN 190

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK G+   AR++  S+T+ GL P++ TY   +        + + H L LD+ V+
Sbjct: 191 SLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGL-LDLMVR 249

Query: 192 -GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P A     ++D+L K+
Sbjct: 250 NGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKS 304



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 129/248 (52%), Gaps = 15/248 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNEAE 71
           P+  +YN +++GLC E    +A EL   M D+  +  P+VV+Y+++I+GF    D ++  
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK-- 106

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+D+ +  +VVT+N I+  LCK + +D+A  +L  M++ GV PD       + Y 
Sbjct: 107 -----MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDC------MTYN 155

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ G C  G+ K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M  +
Sbjct: 156 SIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 215

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ P+   + TL+  +  K    ++  LL  M +  + P   + SI+V    K E    +
Sbjct: 216 GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 275

Query: 252 IPQFNRQK 259
           +  F++ +
Sbjct: 276 MLVFSKMR 283



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 70/107 (65%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+ID LCK G V+ A   F QM DE + P+ + YNSLIH  C  +   +AE L
Sbjct: 289 PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           F+EM+DRG+    + FN I+D  CK  ++ E+ +L DLM++ GV+PD
Sbjct: 349 FLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 45/223 (20%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG----- 67
           +P+ VTYN+++D LCK G   +A+++F  M    + P++ TY +L+ G  YA  G     
Sbjct: 183 EPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQG--YATKGALVEM 240

Query: 68  --------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDE 95
                                            EA  +F +M  +GL  + VT+  ++D 
Sbjct: 241 HGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDV 300

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           LCK+ ++++A    + MI  G+RPD+      + Y  LI  LC   K + A EL   +  
Sbjct: 301 LCKSGRVEDAMLYFEQMIDEGLRPDS------IVYNSLIHSLCIFDKWEKAEELFLEMLD 354

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
            G+  + + +N  I + C + ++ ++  LF  M   GV P+ +
Sbjct: 355 RGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDII 397



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+++ YN++I  LC     +KA+ELFL+M D  I  + + +NS+I   C      E+  
Sbjct: 323 RPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGK 382

Query: 73  LFIEMMDRGLQSDVVTFN 90
           LF  M+  G++ D++T  
Sbjct: 383 LFDLMVRIGVKPDIITLG 400



 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 12/100 (12%)

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG--VAPNCVIFT 201
           ++AR +   L R G+ P+V +YNI ++ LC++ +  +A +L   M   G    P+ V ++
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 202 TLMPSFIRKNETSKVIELLRSMDKR---NVMPYASILSII 238
           T++  F ++ +  K+      +D+R   NV+ Y SI++ +
Sbjct: 93  TVINGFFKEGDLDKM------LDQRISPNVVTYNSIIAAL 126


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 130/232 (56%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY ++I+GLC EG V++A ELF + + + I P++V YNSL+ G C       A  +
Sbjct: 326 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV 385

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + G   D+ T+N++++ LCK   + +AT +++  I  G  PD F       +  L
Sbjct: 386 MNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF------TFNTL 439

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  KL +A +L + +   G+ P+ +TYN  ++ LC   ++++ ++ F +M +KG 
Sbjct: 440 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 499

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN + +  L+ +F R N+  +  +++  M +  + P A   + ++    +N
Sbjct: 500 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRN 551



 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN+++ GLC +G +  A ++  +M +E  +P++ TYN +I+G C   + ++A  
Sbjct: 360 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 419

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  + + +G   DV TFN ++D  CK  K+D A +L++ M + G+ PD       + Y  
Sbjct: 420 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDT------ITYNS 473

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK GK+    E  Q +   G  PN +TYNI I   C   +M++A  + + M  +G
Sbjct: 474 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG 533

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V F TL+  F R  +      L + ++++     A   + ++
Sbjct: 534 LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLI 580



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 6/239 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+NT+IDG CK   +D A +L  +M +  I P+ +TYNS+++G C A   NE    
Sbjct: 431 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 490

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G   + +T+N++++  C++ KM+EA++++  M Q G+ PDA      V++  L
Sbjct: 491 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDA------VSFNTL 544

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G L+ A  L Q L   G      T+N  I A      M  A  +F +M  KG 
Sbjct: 545 IYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGH 604

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             +   +  L+    +     +    L  M K+  +P  S    +++ L  N     ++
Sbjct: 605 RADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAV 663



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 13/239 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + +G R + V   P+ VTYNT+I GLCK+    +A     +M ++   P+  TYN++I G
Sbjct: 246 LVDGMRAYAV---PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDG 302

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +C  +   EA  L  + + +G   D VT+  +++ LC    ++ A  L +     G++PD
Sbjct: 303 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 362

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 IV Y  L+ GLC  G + +A ++   +   G  P++ TYNI I+ LC    +  
Sbjct: 363 ------IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISD 416

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           A  +  D  +KG  P+   F TL+  + ++ +    ++L+  M +  + P    Y S+L
Sbjct: 417 ATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 475



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 7/242 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
             V Y T++ GL   G    A++LF QM   ++ PN+  +N ++H  C   D  EA  L 
Sbjct: 153 GAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLL 212

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +++ RG+  ++ T+N+ +  LC+  ++ EA RL+D     G+R  A+   ++V Y  LI
Sbjct: 213 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVD-----GMR--AYAVPDVVTYNTLI 265

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLCK    + A    + +   G +P+  TYN  I   C    + +A +L  D   KG  
Sbjct: 266 RGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV 325

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
           P+ V + +L+     + +  + +EL      + + P   + + +V  L    + L+++  
Sbjct: 326 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV 385

Query: 255 FN 256
            N
Sbjct: 386 MN 387



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   +N ++  LCK G V +A  L  ++    ++ N+ TYN  I G C A    EA  L
Sbjct: 187 PNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL 246

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            ++ M      DVVT+N ++  LCK     EA   L  M+  G  PD F       Y  +
Sbjct: 247 -VDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDF------TYNTI 299

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CKI  ++ A EL +     G +P+ VTY   I+ LC +  +++A +LF + + KG+
Sbjct: 300 IDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI 359

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V++ +L+     +      ++++  M +    P     +I+++ L K
Sbjct: 360 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCK 410



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 6/187 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TYN +I+  C+   +++A ++ ++M  E ++P+ V++N+LI+GFC   D   A 
Sbjct: 499 CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAY 558

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF ++ ++G  +   TFN ++        M  A ++ D M+  G R D++       Y 
Sbjct: 559 LLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSY------TYR 612

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK   +  A      + + G +P++ T+   I++L  + ++ +A  +   M   
Sbjct: 613 VLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKI 672

Query: 192 GVAPNCV 198
           GV P  V
Sbjct: 673 GVVPEVV 679



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 109/251 (43%), Gaps = 38/251 (15%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC-------- 62
            C P    YN I+D L    + D+A +++++M    ++P++ T+   +  FC        
Sbjct: 83  ACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIA 142

Query: 63  ----------------------YAN-DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99
                                 YA+   ++A  LF +M+   +  ++  FN ++  LCK 
Sbjct: 143 LRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKR 202

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             + EA  LL  +IQ G+       IN+  Y   I GLC+ G+L  A  L   + RA  +
Sbjct: 203 GDVLEAGLLLGKVIQRGM------SINLFTYNIWIRGLCEAGRLPEAVRLVDGM-RAYAV 255

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+VVTYN  I  LC      +A      M  +G  P+   + T++  + + +   +  EL
Sbjct: 256 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 315

Query: 220 LRSMDKRNVMP 230
           L+    +  +P
Sbjct: 316 LKDAVFKGFVP 326



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 48/106 (45%)

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y   I    + G+L++A +  + +      P    YN  + AL +    D+AH +++ M 
Sbjct: 56  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 115

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
             GV+P+    T  + SF         + LLR++  R  + Y +++
Sbjct: 116 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVV 161


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN IID LCK   V+ A + F +++ + I PNVVTY +L++G C ++  ++A  
Sbjct: 187 KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAAR 246

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ + +  +V+T++ ++D   KN K+ EA  L + M++  + PD      IV Y  
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD------IVTYSS 300

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLC   ++  A ++   +   G + +VV+YN  I+  C  ++++    LF +M  +G
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V + TL+  F +  +  K  E    MD   + P     +I++  L  N
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDN 413



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY  +++GLC       A  L   M  + I PNV+TY++L+  F       EA+ 
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 281

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+   +  D+VT++ +++ LC + ++DEA ++ DLM+  G      C  ++V+Y  
Sbjct: 282 LFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG------CLADVVSYNT 335

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK  ++++  +L + +++ GL+ N VTYN  I        +DKA + F  M+  G
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           ++P+   +  L+       E  K + +   M KR    +++ Y +++
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 126/242 (52%), Gaps = 20/242 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT  ++++G C+   V  A  L  +M +    P++V YN++I   C     N+A  
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFD 211

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F E+  +G++ +VVT+  +++ LC + +  +A RLL  MI+  + P      N++ Y  
Sbjct: 212 FFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP------NVITYSA 265

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D   K GK+  A+EL + + R  + P++VTY+  I+ LC  +++D+A+ +F  M  KG
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
              + V + TL+  F +       ++L R M +R               LV N ++ N++
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG--------------LVSNTVTYNTL 371

Query: 253 PQ 254
            Q
Sbjct: 372 IQ 373



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+++I+GLC    +D+A ++F  M  +    +VV+YN+LI+GFC A    +   L
Sbjct: 293 PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 352

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL S+ VT+N ++    +   +D+A      M   G+ PD      I  Y  L
Sbjct: 353 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD------IWTYNIL 406

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC  G+L+ A  + + + +  +  ++VTY   I  +C   ++++A  LF  + +KG+
Sbjct: 407 LGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL 466

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
            P+ V +TT+M     K    +V  L   M +  +M     LS
Sbjct: 467 KPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 509



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V+YNT+I+G CK   V+   +LF +M    +  N VTYN+LI GF  A D ++A+
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F +M   G+  D+ T+N+++  LC N ++++A  + + M +  +      +++IV Y 
Sbjct: 386 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM------DLDIVTYT 439

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+CK GK++ A  L  SL+  GL P++VTY   +  LC    + +   L+  M+ +
Sbjct: 440 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499

Query: 192 GVAPN 196
           G+  N
Sbjct: 500 GLMKN 504



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 118/226 (52%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +N ++  + K    D    L  +M+   I  ++ T+N +I+ FC     + A  +
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G + D VT   +++  C+  ++ +A  L+D M++ G +PD      IVAY  +
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPD------IVAYNAI 196

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK  ++ +A +  + + R G+ PNVVTY   ++ LCN  +   A  L  DM  K +
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            PN + ++ L+ +F++  +  +  EL   M + ++ P    Y+S++
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLI 302



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 6/211 (2%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A +LF  M      P++V +N L+         +    L  +M   G+++D+ TFN++++
Sbjct: 69  AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             C   ++  A  +L  M++ G  PD       V  G L++G C+  ++ +A  L   + 
Sbjct: 129 CFCCCFQVSLALSILGKMLKLGYEPDR------VTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
             G  P++V YN  I +LC  ++++ A D F ++E KG+ PN V +T L+      +  S
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               LL  M K+ + P     S ++D  VKN
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKN 273



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 84  SDVVTFNVIMDELCKNR----KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           S  V+   + + L K R    K+++A  L   M++    P      +IV +  L+  + K
Sbjct: 44  SSSVSGGDLRERLSKTRLRDIKLNDAIDLFSDMVKSRPFP------SIVDFNRLLSAIVK 97

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           + K      L + +   G+  ++ T+NI I+  C   Q+  A  +   M   G  P+ V 
Sbjct: 98  LKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVT 157

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +L+  F R+N  S  + L+  M +    P     + I+D L K +
Sbjct: 158 IGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTK 204



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT 53
           KP+ VTY T++ GLC +G + + + L+ +MK E +  N  T
Sbjct: 467 KPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT 507


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 118/208 (56%), Gaps = 9/208 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   T++ ++D  CKEG V +AK +F+ M  +++ PN+VTYNSL++G+C  N+ N+AE +
Sbjct: 277 PTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESI 336

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G+  DV ++++++   CK + +DEA +L + M    + PD      +V Y  L
Sbjct: 337 FNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPD------VVTYNSL 390

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G++  A +L   +   G  PN++TYN  + ALC +  +DKA +L   ++   +
Sbjct: 391 IDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNI 450

Query: 194 APNCVIFTTLMPSFI---RKNETSKVIE 218
            P+   +  L+       R  +  KV E
Sbjct: 451 QPSVCTYNILINGLCKSGRLKDAQKVFE 478



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYNT+I GLC  G +  A  L  +M  ENINP V T++ L+  FC      EA+ +
Sbjct: 242 PTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNV 301

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+ MM + ++ ++VT+N +M+  C   ++++A  + + M Q GV PD      + +Y  +
Sbjct: 302 FVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPD------VHSYSIM 355

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CKI  +  A +L + +    + P+VVTYN  I  LC   ++  A  L  +M  +G 
Sbjct: 356 ISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQ 415

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN + + +L+ +  + +   K IELL  +   N+ P     +I+++ L K+
Sbjct: 416 PPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKS 467



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 127/238 (53%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + + + V YNTIIDG+CK+  V+ A + + +M  + I P VVTYN+LI G C      
Sbjct: 202 GKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLK 261

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  L  +M+   +   V TF++++D  CK  K+ EA  +  +M++  V+P      NIV
Sbjct: 262 DAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKP------NIV 315

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L++G C + ++  A  +  ++ + G+ P+V +Y+I I   C  + +D+A  LF +M
Sbjct: 316 TYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEM 375

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             K + P+ V + +L+    +    S  ++L+  M  R   P     + ++D L KN 
Sbjct: 376 HCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNH 433



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T  T+I GLC +G + KA     ++       N V+Y +LI+G C       A  
Sbjct: 136 EPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALE 195

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   +  + ++ DVV +N I+D +CK++ +++A      M+   + P       +V Y  
Sbjct: 196 MLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICP------TVVTYNT 249

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC +G+LK+A  L   +    + P V T++I + A C + ++ +A ++F+ M  K 
Sbjct: 250 LICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKD 309

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V PN V + +LM  +   NE +K   +  +M +  V P     SI++    K
Sbjct: 310 VKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCK 361



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +  I+  L K         L  QM+   I  N+VT + LI+ F      + +  +
Sbjct: 67  PSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSV 126

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  ++ +G + D +T   ++  LC    + +A    D ++  G       ++N V+Y  L
Sbjct: 127 FSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGF------QLNQVSYRTL 180

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+G+ K A E+ + +    +  +VV YN  I  +C D+ ++ A D + +M  K +
Sbjct: 181 INGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRI 240

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P  V + TL+       +    I LL  M   N+ P     SI+VD   K
Sbjct: 241 CPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCK 291



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 6/128 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN++IDGLCK G +  A +L  +M D    PN++TYNSL+   C  +  ++A  L
Sbjct: 382 PDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIEL 441

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             ++ D  +Q  V T+N++++ LCK+ ++ +A ++ + ++  G   D +       Y  +
Sbjct: 442 LTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVY------TYNTM 495

Query: 134 IDGLCKIG 141
           I G CK G
Sbjct: 496 IKGFCKKG 503



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/206 (17%), Positives = 79/206 (38%), Gaps = 41/206 (19%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           +  +N  P+++ +  ++     AN  +    L  +M   G+ S++VT +++++   +   
Sbjct: 60  LHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGH 119

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
              +  +   +++ G  PDA      +    LI GLC  G +  A      +   G   N
Sbjct: 120 NSLSFSVFSNILKKGYEPDA------ITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLN 173

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
            V+Y   I+ LC                                   +  +T   +E+LR
Sbjct: 174 QVSYRTLINGLC-----------------------------------KVGQTKAALEMLR 198

Query: 222 SMDKRNVMPYASILSIIVDLLVKNEI 247
            +D + V     + + I+D + K+++
Sbjct: 199 RIDGKLVRLDVVMYNTIIDGVCKDKL 224


>gi|224137548|ref|XP_002322585.1| predicted protein [Populus trichocarpa]
 gi|222867215|gb|EEF04346.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 124/235 (52%), Gaps = 17/235 (7%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN ++YN +I+G CK   +D+AK+LF +M    + PN  +YN+LI G        EA+
Sbjct: 6   CMPNVLSYNILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLFQVGRILEAK 65

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M  +G   D+VT+++++D L K             M    + PD      +V Y 
Sbjct: 66  ELFKDMHAQGCSPDLVTYSILLDGLSKQE-----------MQNNYLNPD------LVIYN 108

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID +CK GKL++AREL   L   GL+P+V ++   I  LC +  +D+A+  F  ME  
Sbjct: 109 ILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERD 168

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  P+C  +  ++  F++ N  S+  +L + M  R     A   ++  DLL K++
Sbjct: 169 GCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADALTRTLAADLLSKDD 223



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%)

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G MPNV++YNI I+  C   ++D+A  LF +M  +G+ PN   + TL+    +     + 
Sbjct: 5   GCMPNVLSYNILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLFQVGRILEA 64

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
            EL + M  +   P     SI++D L K E+  N +
Sbjct: 65  KELFKDMHAQGCSPDLVTYSILLDGLSKQEMQNNYL 100


>gi|449468059|ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 225

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 9/221 (4%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           L+ +M      PN  TY +L+ G        +A+ LF  +   G+ +D   + + +D LC
Sbjct: 3   LYNEMLQVGKRPNATTYGTLLTGLFQTGKVGDAKKLFRVLKTYGISADSCIYRIFLDGLC 62

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           KN  + EA    + +    ++ D      I +Y CLIDGLCK GKL+ A EL + L + G
Sbjct: 63  KNGCLYEAMEHFNQLKSYNIKLD------IESYNCLIDGLCKAGKLETAWELFEKLYQEG 116

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L  +VVTYNI IH  C   Q+DKA+ LF  ME  G  P+ + + TL+  F + N++ +V+
Sbjct: 117 LQSDVVTYNIMIHGFCKVGQVDKANILFEKMEENGCTPDIITYNTLLCGFCQSNKSDEVV 176

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKNEI---SLNSIPQF 255
           +LL  M +R++ P A   +I++D+L K+E     L+ +P+F
Sbjct: 177 KLLHKMIQRDMSPDAISCNIVIDMLRKDEKYQECLDLLPRF 217



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 8/180 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           + +G+    ++  Y   +DGLCK G + +A E F Q+K  NI  ++ +YN LI G C A 
Sbjct: 43  KTYGI--SADSCIYRIFLDGLCKNGCLYEAMEHFNQLKSYNIKLDIESYNCLIDGLCKAG 100

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A  LF ++   GLQSDVVT+N+++   CK  ++D+A  L + M + G  PD     
Sbjct: 101 KLETAWELFEKLYQEGLQSDVVTYNIMIHGFCKVGQVDKANILFEKMEENGCTPD----- 155

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            I+ Y  L+ G C+  K     +L   + +  + P+ ++ NI I  L  DE+  +  DL 
Sbjct: 156 -IITYNTLLCGFCQSNKSDEVVKLLHKMIQRDMSPDAISCNIVIDMLRKDEKYQECLDLL 214


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            PN VTYN+II  LCK   VDKA E+   M    + P+ +TYNS++HGFC +    EA  
Sbjct: 113 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 172

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++PD      I  YG 
Sbjct: 173 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD------ITTYGT 226

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G    G L     L   + R G+ PN   ++I + A    E++++A  +F  M  +G
Sbjct: 227 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQG 286

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V + T++    +       +     M    + P
Sbjct: 287 LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP 324



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 128/238 (53%), Gaps = 15/238 (6%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ V+Y+T+I+G  KEG +DK       M D+ I+PNVVTYNS+I   C A   +
Sbjct: 81  GGDCPPDVVSYSTVINGFFKEGDLDK-------MLDQRISPNVVTYNSIIAALCKAQTVD 133

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +   M+  G+  D +T+N I+   C + +  EA   L  M   GV PD      +V
Sbjct: 134 KAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPD------VV 187

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+D LCK G+   AR++  S+T+ GL P++ TY   +        + + H L LD+
Sbjct: 188 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGL-LDL 246

Query: 189 EVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V+ G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P A     ++D+L K+
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKS 304



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 129/248 (52%), Gaps = 15/248 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNEAE 71
           P+  +YN +++GLC E    +A EL   M D+  +  P+VV+Y+++I+GF    D ++  
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK-- 106

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+D+ +  +VVT+N I+  LCK + +D+A  +L  M++ GV PD       + Y 
Sbjct: 107 -----MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDC------MTYN 155

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ G C  G+ K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M  +
Sbjct: 156 SIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 215

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ P+   + TL+  +  K    ++  LL  M +  + P   + SI+V    K E    +
Sbjct: 216 GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 275

Query: 252 IPQFNRQK 259
           +  F++ +
Sbjct: 276 MLVFSKMR 283



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 51/286 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+ID LCK G V+ A   F QM DE + P+ + YNSLIH  C  +   +AE L
Sbjct: 289 PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA---- 129
           F+EM+DRG+    + FN I+D  CK  ++ E+ +L DLM++ GV+PD       +     
Sbjct: 349 FLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARR 408

Query: 130 -YGCLIDGLCKIGKLKNARELSQ----------SLTRAGLMPNVVTYNITIHALCNDE-- 176
            Y   ++       + N  +  +          + + +   P + TYNI +H LC ++  
Sbjct: 409 DYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLT 468

Query: 177 ---------------------------------QMDKAHDLFLDMEVKGVAPNCVIFTTL 203
                                            + D+A DLF+     G+ PN   +  +
Sbjct: 469 DDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLM 528

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEIS 248
             + I +    ++ +L  SM+       + +L+ IV +LL + EI+
Sbjct: 529 AENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 574



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 45/234 (19%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG----- 67
           +P+ VTYN+++D LCK G   +A+++F  M    + P++ TY +L+ G  YA  G     
Sbjct: 183 EPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQG--YATKGALVEM 240

Query: 68  --------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDE 95
                                            EA  +F +M  +GL  + VT+  ++D 
Sbjct: 241 HGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDV 300

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           LCK+ ++++A    + MI  G+RPD+      + Y  LI  LC   K + A EL   +  
Sbjct: 301 LCKSGRVEDAMLYFEQMIDEGLRPDS------IVYNSLIHSLCIFDKWEKAEELFLEMLD 354

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            G+  + + +N  I + C + ++ ++  LF  M   GV P+ +     + S  R
Sbjct: 355 RGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARR 408



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 117/249 (46%), Gaps = 27/249 (10%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG------------FC 62
           +T+ +N+IID  CKEG V ++ +LF  M    + P+++T    +              F 
Sbjct: 360 STIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFI 419

Query: 63  Y---ANDGNEAEYLFIEMMDRGLQSD------VVTFNVIMDELCKNRKMDEATRLLDLMI 113
           +   +N G++ +   +        S+      + T+N+I+  LCKN+  D+A R+   + 
Sbjct: 420 FTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLC 479

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
              ++ +A        +  +ID L K+G+   A++L  + +  GL+PN  TY +    + 
Sbjct: 480 LMDLKLEA------RTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENII 533

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
               +++   LFL ME  G   +  +   ++   +++ E ++    L  +D+++    AS
Sbjct: 534 GQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEAS 593

Query: 234 ILSIIVDLL 242
             S+ +DLL
Sbjct: 594 TASLFIDLL 602



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 12/100 (12%)

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG--VAPNCVIFT 201
           ++AR +   L R G+ P+V +YNI ++ LC++ +  +A +L   M   G    P+ V ++
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 202 TLMPSFIRKNETSKVIELLRSMDKR---NVMPYASILSII 238
           T++  F ++ +  K+      +D+R   NV+ Y SI++ +
Sbjct: 93  TVINGFFKEGDLDKM------LDQRISPNVVTYNSIIAAL 126


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 135/268 (50%), Gaps = 25/268 (9%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P  VTY  +I    K   V +A ++F +M D    PN VTY +L+ G C A + ++
Sbjct: 352 VGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISK 411

Query: 70  AEYLFIEMM---------------DRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           A  ++ +++               DR  L  +VVT+  ++D LCK  K+D A  LLD M+
Sbjct: 412 AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 471

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             G      CE N + Y  LIDG CK GK+ +A+E+   +T+ G +P+V TY   I  + 
Sbjct: 472 SSG------CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 525

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            D ++D A  +   M      PN V +T ++    R  E+ K ++LL  M+++   P   
Sbjct: 526 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 585

Query: 234 ILSIIVDLLVKN---EISLNSIPQFNRQ 258
             + ++D L K    ++SL+   Q +R+
Sbjct: 586 TYTALIDGLGKAGKIDLSLDLFTQMSRK 613



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 22/248 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY+ +I  LC    V+KA  LF +MK   + P+V TY  LI  FC A    +A++L
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G    VVT+  ++    K +++ +A  +   M+  G RP      N V YG L
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRP------NDVTYGAL 399

Query: 134 IDGLCKIGKLKNARELSQSLT----------------RAGLMPNVVTYNITIHALCNDEQ 177
           +DGLCK G +  A E+   L                 R  L PNVVTY   +  LC   +
Sbjct: 400 VDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHK 459

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +D AH+L   M   G  PN +++  L+  F +  +     E+   M K   +P     + 
Sbjct: 460 VDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 519

Query: 238 IVDLLVKN 245
           ++D + K+
Sbjct: 520 LIDRMFKD 527



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 111/217 (51%), Gaps = 7/217 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++DGLCK   VD A EL   M      PN + Y++LI GFC A   + A+ +
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F++M   G    V T+  ++D + K+ ++D A ++L  M++    P      N+V Y  +
Sbjct: 502 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTP------NVVTYTAM 555

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLC+IG+ + A +L   +   G  PNVVTY   I  L    ++D + DLF  M  KG 
Sbjct: 556 IDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGC 615

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +PN V +  L+          K   LL  M K+   P
Sbjct: 616 SPNYVTYRVLINHLCAAGLLDKARLLLGEM-KQTYWP 651



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 6/246 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T++ G  K+  +   K +   M  E  NPN   +NSL+H +C   D   A 
Sbjct: 138 CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAY 197

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAY 130
            L   M   G     V +N+ +  +C   K+  +  LLDL  +  G    A C +N V  
Sbjct: 198 KLLNRMTTCGCPPGYVVYNIFIGSICGQEKL-PSPDLLDLAEKIYGEMLAANCVLNKVNV 256

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
                 LC +GK   A +L + + R G +P+  TY+  I  LC+  +++KA  LF +M++
Sbjct: 257 ANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM 316

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            GV P+   +T L+ SF +     +   L   M      P     + ++   +K +    
Sbjct: 317 VGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAK---- 372

Query: 251 SIPQFN 256
            +PQ N
Sbjct: 373 QVPQAN 378



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 113/240 (47%), Gaps = 35/240 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGLC+ G  +KA +L   M+++  +PNVVTY +LI G   A   + + 
Sbjct: 545 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM--------IQG------GV 117
            LF +M  +G   + VT+ V+++ LC    +D+A  LL  M        +QG      G 
Sbjct: 605 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF 664

Query: 118 RPDAFCEINIV-------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                  + I+              YG LID   K G+L+ A EL + +     +P+ V 
Sbjct: 665 SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME---VPSSVK 721

Query: 165 -----YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
                Y   I ALC   Q+++A  L+ +M  +G  P   +F  L+   +   +  + ++L
Sbjct: 722 TDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 9/205 (4%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           +KD    P+ VTYN+L+     A   +    +  EM + G   D  T       LCK  +
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
             +A  +++       R D   +++ V    +I GL +      A      +     +PN
Sbjct: 91  WADALDMIE-------REDF--KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPN 141

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY   +      +Q+     +   M  +G  PN  +F +L+ S+  + + +   +LL 
Sbjct: 142 VVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLN 201

Query: 222 SMDKRNVMPYASILSIIVDLLVKNE 246
            M      P   + +I +  +   E
Sbjct: 202 RMTTCGCPPGYVVYNIFIGSICGQE 226


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I G C  G +D A  LF +M+ +   PNVVTYN+LI G+C     ++   L
Sbjct: 203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKL 262

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  +GL+ +++++NV+++ LC+  +M E + +L  M + G   D       V Y  L
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE------VTYNTL 316

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK G    A  +   + R GL P+V+TY   IH++C    M++A +    M V+G+
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN   +TTL+  F +K   ++   +LR M+     P
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSP 413



 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 122/217 (56%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY T++DG  ++G++++A  +  +M D   +P+VVTYN+LI+G C      +A  +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M ++GL  DVV+++ ++   C++  +DEA R+   M++ G++PD       + Y  L
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDT------ITYSSL 491

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+  + K A +L + + R GL P+  TY   I+A C +  ++KA  L  +M  KGV
Sbjct: 492 IQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV 551

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V ++ L+    +++ T +   LL  +     +P
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVP 588



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY ++I  +CK G +++A E   QM+   + PN  TY +L+ GF      NEA  +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM D G    VVT+N +++  C   KM++A  +L+ M + G+ PD      +V+Y  +
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD------VVSYSTV 456

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G C+   +  A  + + +   G+ P+ +TY+  I   C   +  +A DL+ +M   G+
Sbjct: 457 LSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGL 516

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   +T L+ ++  + +  K ++L   M ++ V+P     S++++ L K 
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQ 568



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 33/257 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+IDG CK   +D   +L   M  + + PN+++YN +I+G C      E  
Sbjct: 236 CLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVS 295

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV--- 128
           ++  EM  RG   D VT+N ++   CK     +A  +   M++ G+ P      +++   
Sbjct: 296 FVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSM 355

Query: 129 --------------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                                      Y  L+DG  + G +  A  + + +   G  P+V
Sbjct: 356 CKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSV 415

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTYN  I+  C   +M+ A  +  DM+ KG++P+ V ++T++  F R  +  + + + R 
Sbjct: 416 VTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKRE 475

Query: 223 MDKRNVMP----YASIL 235
           M ++ + P    Y+S++
Sbjct: 476 MVEKGIKPDTITYSSLI 492



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 13/223 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+T+TY+++I G C++    +A +L+ +M    + P+  TY +LI+ +C   D  +A  
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCE------- 124
           L  EM+++G+  DVVT++V+++ L K  +  EA RLL  L  +  V  D           
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601

Query: 125 -INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            I   +   LI G C  G +  A ++ +S+      P+   YNI IH  C    + KA+ 
Sbjct: 602 NIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYT 661

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNET----SKVIELLRS 222
           L+ +M   G   + V    L+ +  ++ +     S ++ +LRS
Sbjct: 662 LYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRS 704



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 116/230 (50%), Gaps = 11/230 (4%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NE 69
           +C   +  ++ ++    +   +DKA  +    +     P V++YN+++     +    + 
Sbjct: 129 LCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISF 188

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           AE +F EM++  +  +V T+N+++   C    +D A  L D M   G  P      N+V 
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLP------NVVT 242

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LIDG CK+ K+ +  +L +S+   GL PN+++YN+ I+ LC + +M +   +  +M 
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN 302

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASIL 235
            +G + + V + TL+  + ++    + +    E+LR     +V+ Y S++
Sbjct: 303 RRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLI 352



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 23/207 (11%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN----------- 55
           E GV+  P+ VTY+ +I+GL K+    +AK L L++  E   P+ VTY+           
Sbjct: 548 EKGVL--PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEF 605

Query: 56  ----SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL 111
               SLI GFC      EA+ +F  M+ +  + D   +N+++   C+   + +A  L   
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKE 665

Query: 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           M++ G        ++ V    L+  L K GK+     +   + R+  +       + +  
Sbjct: 666 MVKSGFL------LHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEI 719

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCV 198
              +  MD   D+  +M   G  PN +
Sbjct: 720 NHREGNMDVVLDVLAEMAKDGFLPNGI 746


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 129/232 (55%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I+GLCKEG +D A +LFL+M D  + PN VT+ +LI+G C     +    +
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+ +G++ DV+T+N +++ LCK   + EA +L+  M Q G++PD F       Y  L
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKF------TYTML 406

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L++A E+ + + + G+  + V +   I   C + Q+ +A     +M   G+
Sbjct: 407 IDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGI 466

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   +T ++  F +K +     +LL+ M     +P     +++++ L K 
Sbjct: 467 KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQ 518



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  V++NT+I+G CK G +D+   L   M +  + P+V TY+ LI+G C     ++A  
Sbjct: 257 RPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANK 316

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF+EM DRGL  + VTF  +++  C   + D    +   M++ GV+PD      ++ Y  
Sbjct: 317 LFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPD------VITYNT 370

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK+G L+ A++L   +T+ GL P+  TY + I   C +  ++ A ++  +M  +G
Sbjct: 371 LINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG 430

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V FT L+  F R+ +  +    LR M +  + P  +  ++++    K
Sbjct: 431 IELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCK 482



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+I+G C  G  D   E++ QM  + + P+V+TYN+LI+G C   D  EA+ L
Sbjct: 328 PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKL 387

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            IEM  RGL+ D  T+ +++D  CK   ++ A  +   M++ G+      E++ VA+  L
Sbjct: 388 VIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGI------ELDNVAFTAL 441

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G++  A    + +  AG+ P+  TY + IH  C    +     L  +M+  G 
Sbjct: 442 ISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGH 501

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P  V +  L+    ++ +      LL +M    V+P
Sbjct: 502 VPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVP 538



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 104/192 (54%), Gaps = 6/192 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYNT+I+GLCK G + +AK+L ++M    + P+  TY  LI G C   D   A  
Sbjct: 362 KPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALE 421

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  G++ D V F  ++   C+  ++ EA R L  M++ G++PD         Y  
Sbjct: 422 IRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDD------ATYTM 475

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G CK G +K   +L + +   G +P VVTYN+ ++ LC   QM  A+ L   M   G
Sbjct: 476 VIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLG 535

Query: 193 VAPNCVIFTTLM 204
           V P+ + +  L+
Sbjct: 536 VVPDDITYNILL 547



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + ++ +++     G+   A + F  ++  N+     +   L       N  + A   + E
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE 215

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           ++D G   DV  FNV+M  LCK  K++EA  L   + + G+RP       +V++  LI+G
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRP------TVVSFNTLING 269

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK G L     L + +    + P+V TY++ I+ LC + Q+D A+ LFL+M  +G+ PN
Sbjct: 270 YCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPN 329

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V FTTL+            +E+ + M ++ V P     + +++ L K
Sbjct: 330 DVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCK 377



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY  +I G CK+G V    +L  +M+ +   P VVTYN L++G C       A  
Sbjct: 467 KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANM 526

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           L   M++ G+  D +T+N++++   +  K
Sbjct: 527 LLDAMLNLGVVPDDITYNILLERTLQAWK 555


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY  +I G CK   +D+A  LF +M D  + PNVVTY +LI G C     + A 
Sbjct: 243 CSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAY 302

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M + GL  +  T +V++D LCK+ ++ EA  LL  +IQ G++      +N + Y 
Sbjct: 303 RLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIK------VNEIVYT 356

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLCK G+   A  L Q+L   G +P+  TY+  I  LC  +++ +A  +  DM  K
Sbjct: 357 SLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEK 416

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           GV P+ V +T ++   +R+       ++L  M    + P     +I V
Sbjct: 417 GVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFV 464



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 6/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y T++ GLC  G   +A+ L      E   PNVV YN+LI G+C   D   A 
Sbjct: 173 CAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAV 232

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M   G   +V T+  ++   CK+RK+D A  L   M+  G+ P      N+V Y 
Sbjct: 233 DVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVP------NVVTYT 286

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C  G+L  A  L QS+  +GL+PN  T ++ I ALC  E++ +A  L   +  K
Sbjct: 287 ALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQK 346

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G+  N +++T+L+    +    +    L++++  +  +P A   S ++D L + +
Sbjct: 347 GIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQK 401



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 7/238 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N + Y ++IDGLCK G    A  L   +  +   P+  TY+SLI G C   + +EA  
Sbjct: 349 KVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAML 408

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +MM++G+Q   VT+ +I+DEL +    D + ++LD MI  G++PD F       Y  
Sbjct: 409 VLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVF------TYTI 462

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +   C  G++++A  +   +   G+ PN+VTYN  I    N     +A   F  M   G
Sbjct: 463 FVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANG 522

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY-ASILSIIVDLLVKNEISL 249
             PN   +T L+   I+K  ++ +     S+ K   M Y   +L  +V L + +EI +
Sbjct: 523 CKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDI 580



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 7/240 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T + +ID LCK   V +A+ L   +  + I  N + Y SLI G C A     A+ L
Sbjct: 315 PNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRL 374

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ +G   D  T++ ++D LC+ +++ EA  +LD M++ GV+P        V Y  +
Sbjct: 375 MQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSP------VTYTII 428

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID L +      ++++   +  AG+ P+V TY I + + C++ +M+ A  + L M   GV
Sbjct: 429 IDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGV 488

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN V +  L+  +     TS+     + M      P     ++++ LL+K E S N+IP
Sbjct: 489 CPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESS-NNIP 547



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 107/233 (45%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++  Y + + G C+ G +  A  LF+ M          TY +L+HG C A    EA  +
Sbjct: 105 PDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSV 164

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G   D   +  ++  LC   +  EA  LL   +  G  P      N+V Y  L
Sbjct: 165 FAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEP------NVVVYNAL 218

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C +G L+ A ++ + +   G  PNV TY   I   C   ++D+A  LF  M   G+
Sbjct: 219 IDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGL 278

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN V +T L+       +      LL+SM+   ++P     S+++D L K+E
Sbjct: 279 VPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHE 331



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 114/285 (40%), Gaps = 65/285 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG----- 67
           KP+  TY   +   C EG ++ A+ + L M D  + PN+VTYN+LI G  YAN G     
Sbjct: 454 KPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICG--YANLGLTSQA 511

Query: 68  --------------NEAEY----------------------------------LFIEMMD 79
                         NE  Y                                  L  EM+ 
Sbjct: 512 FSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVK 571

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
             L S++  +N  +  LC+  ++DEA  LL  M    + P      +I+A  C     C+
Sbjct: 572 LQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIA--CC----CR 625

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           +  L  A     S+ ++G +P + +Y   I +LC +  +  A  +F DM  K      + 
Sbjct: 626 LKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIA 685

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVD 240
           +  L+   ++K   ++   LL  M+++N  P    YA +   I D
Sbjct: 686 WRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYARLTGKITD 730



 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/114 (21%), Positives = 43/114 (37%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+  Y  LI+  C  G L  ++    SL RAG  P+   Y   +   C    +  A  LF
Sbjct: 71  NLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLF 130

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + M ++G       +T L+          + + +   M      P   + + +V
Sbjct: 131 VLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMV 184


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 135/268 (50%), Gaps = 25/268 (9%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P  VTY  +I    K   V +A ++F +M D    PN VTY +L+ G C A + ++
Sbjct: 287 VGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISK 346

Query: 70  AEYLFIEMM---------------DRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           A  ++ +++               DR  L  +VVT+  ++D LCK  K+D A  LLD M+
Sbjct: 347 AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 406

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             G      CE N + Y  LIDG CK GK+ +A+E+   +T+ G +P+V TY   I  + 
Sbjct: 407 SSG------CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 460

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            D ++D A  +   M      PN V +T ++    R  E+ K ++LL  M+++   P   
Sbjct: 461 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 520

Query: 234 ILSIIVDLLVKN---EISLNSIPQFNRQ 258
             + ++D L K    ++SL+   Q +R+
Sbjct: 521 TYTALIDGLGKAGKIDLSLDLFTQMSRK 548



 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 22/248 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY+ +I  LC    V+KA  LF +MK   + P+V TY  LI  FC A    +A++L
Sbjct: 221 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 280

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G    VVT+  ++    K +++ +A  +   M+  G RP      N V YG L
Sbjct: 281 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRP------NDVTYGAL 334

Query: 134 IDGLCKIGKLKNARELSQSLT----------------RAGLMPNVVTYNITIHALCNDEQ 177
           +DGLCK G +  A E+   L                 R  L PNVVTY   +  LC   +
Sbjct: 335 VDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHK 394

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +D AH+L   M   G  PN +++  L+  F +  +     E+   M K   +P     + 
Sbjct: 395 VDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 454

Query: 238 IVDLLVKN 245
           ++D + K+
Sbjct: 455 LIDRMFKD 462



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 111/217 (51%), Gaps = 7/217 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++DGLCK   VD A EL   M      PN + Y++LI GFC A   + A+ +
Sbjct: 377 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 436

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F++M   G    V T+  ++D + K+ ++D A ++L  M++    P      N+V Y  +
Sbjct: 437 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTP------NVVTYTAM 490

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLC+IG+ + A +L   +   G  PNVVTY   I  L    ++D + DLF  M  KG 
Sbjct: 491 IDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGC 550

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +PN V +  L+          K   LL  M K+   P
Sbjct: 551 SPNYVTYRVLINHLCAAGLLDKARLLLGEM-KQTYWP 586



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 6/246 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T++ G  K+  +   K +   M  E  NPN   +NSL+H +C   D   A 
Sbjct: 73  CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAY 132

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAY 130
            L   M   G     V +N+ +  +C   K+  +  LLDL  +  G    A C +N V  
Sbjct: 133 KLLNRMTTCGCPPGYVVYNIFIGSICGQEKL-PSPDLLDLAEKIYGEMLAANCVLNKVNV 191

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
                 LC +GK   A +L + + R G +P+  TY+  I  LC+  +++KA  LF +M++
Sbjct: 192 ANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM 251

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            GV P+   +T L+ SF +     +   L   M      P     + ++   +K +    
Sbjct: 252 VGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAK---- 307

Query: 251 SIPQFN 256
            +PQ N
Sbjct: 308 QVPQAN 313



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 113/240 (47%), Gaps = 35/240 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGLC+ G  +KA +L   M+++  +PNVVTY +LI G   A   + + 
Sbjct: 480 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 539

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM--------IQG------GV 117
            LF +M  +G   + VT+ V+++ LC    +D+A  LL  M        +QG      G 
Sbjct: 540 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF 599

Query: 118 RPDAFCEINIV-------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                  + I+              YG LID   K G+L+ A EL + +     +P+ V 
Sbjct: 600 SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME---VPSSVK 656

Query: 165 -----YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
                Y   I ALC   Q+++A  L+ +M  +G  P   +F  L+   +   +  + ++L
Sbjct: 657 TDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 716



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 37/215 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGL K G +D + +LF QM  +  +PN VTY  LI+  C A   ++A 
Sbjct: 515 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKAR 574

Query: 72  YLFIEMMD--------------RGLQSDVVT-------------------FNVIMDELCK 98
            L  EM                +G     +                    + +++D   K
Sbjct: 575 LLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSK 634

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             +++ A  L   M++    P +    N + Y  LI  LC   +++ A  L   +TR G 
Sbjct: 635 AGRLEIAMELHKEMME---VPSSVKTDNDM-YASLIQALCLASQVEEAFRLYSEMTRRGF 690

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +P +  +   I  L   ++ D+A  L   +  +GV
Sbjct: 691 VPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGV 725



 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 9/170 (5%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M + G   D  T       LCK  +  +A  +++       R D   +++ V    +I G
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADALDMIE-------REDF--KLDTVLCTHMISG 51

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           L +      A      +     +PNVVTY   +      +Q+     +   M  +G  PN
Sbjct: 52  LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 111

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +F +L+ S+  + + +   +LL  M      P   + +I +  +   E
Sbjct: 112 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE 161


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTYNTI++GLCKE  + +A ELF +M +  + P+  T+ +LI+G+    + N+A 
Sbjct: 564 CXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAV 623

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M+ R L+ DVVT+N ++D  CK  +M++   L + MI   + P      N ++YG
Sbjct: 624 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYP------NHISYG 677

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G C +G +  A  L   +   G    ++T N  +   C      KA +   +M +K
Sbjct: 678 ILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 737

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P+ + + TL+  FI++    +   L+  M+   ++P     ++I++
Sbjct: 738 GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILN 786



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 129/260 (49%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+I+  C++G +++A EL   M  + + P V TYN++I+G C       A+ +
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--AFCEI------ 125
             EM+  G+  D  T+N+++ E C+N  M +A R+ D M   GV PD  +F  +      
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 510

Query: 126 ---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                + V Y  LI G C+ G +  A ++   +   G   +VVT
Sbjct: 511 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVT 570

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  ++ LC ++ + +A +LF +M  +GV P+   FTTL+  + +    +K + L   M 
Sbjct: 571 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMI 630

Query: 225 KRNVMPYASILSIIVDLLVK 244
           +RN+ P     + ++D   K
Sbjct: 631 QRNLKPDVVTYNTLIDGFCK 650



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+IDG CK   ++K  EL+  M    I PN ++Y  LI+G+C     +EA  
Sbjct: 635 KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 694

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+++G ++ ++T N I+   C+     +A   L  M+  G+ PD       + Y  
Sbjct: 695 LWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG------ITYNT 748

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  K   +  A  L   +  +GL+P+V+TYN+ ++      +M +A  + L M  +G
Sbjct: 749 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG 808

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V P+   +T+L+   + +N   +   +   M +R  +P
Sbjct: 809 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 846



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y  +I G C+ G + +A ++  +M ++    +VVTYN++++G C     +EA+ L
Sbjct: 531 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADEL 590

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM +RG+  D  TF  +++   K+  M++A  L ++MIQ  ++PD      +V Y  L
Sbjct: 591 FTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPD------VVTYNTL 644

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +++   EL   +    + PN ++Y I I+  CN   + +A  L+ +M  KG 
Sbjct: 645 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 704

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               +   T++  + R     K  E L +M  + ++P     + +++  +K E
Sbjct: 705 EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 757



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 8/215 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+ V+++ +I  L K G +D+A + F  MK+  + P+ V Y  LI GFC     +
Sbjct: 493 GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMS 550

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  +  EM+++G   DVVT+N I++ LCK + + EA  L   M + GV PD +      
Sbjct: 551 EALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY------ 604

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  LI+G  K G +  A  L + + +  L P+VVTYN  I   C   +M+K ++L+ DM
Sbjct: 605 TFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 664

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             + + PN + +  L+  +      S+   L   M
Sbjct: 665 ISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEM 699



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N+++ GL K G+VD A E++ ++    +  NV T N +I+  C        +    +M +
Sbjct: 327 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 386

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           +G+  DVVT+N +++  C+   ++EA  L+D M   G++P  F       Y  +I+GLCK
Sbjct: 387 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVF------TYNAIINGLCK 440

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            GK   A+ +   + + G+ P+  TYNI +   C ++ M  A  +F +M  +GV P+ V 
Sbjct: 441 TGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVS 500

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           F+ L+    +     + ++  R M    + P   I +I++    +N +
Sbjct: 501 FSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 548



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T N +I+ LCK   ++  K     M+++ + P+VVTYN+LI+ +C      EA  L 
Sbjct: 357 NVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM 416

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  +GL+  V T+N I++ LCK  K   A  +LD M++ G+ PD         Y  L+
Sbjct: 417 DSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT------ATYNILL 470

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C+   + +A  +   +   G++P++V+++  I  L  +  +D+A   F DM+  G+A
Sbjct: 471 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 530

Query: 195 PNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASIL 235
           P+ VI+T L+  F R    S+ +    E+L      +V+ Y +IL
Sbjct: 531 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTIL 575



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N + ++ ++    +   + +  E F  +K + +  ++   NSL+ G       + A 
Sbjct: 284 CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 343

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ E++  G+Q +V T N++++ LCKN+K++     L  M + GV PD      +V Y 
Sbjct: 344 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPD------VVTYN 397

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+  C+ G L+ A EL  S++  GL P V TYN  I+ LC   +  +A  +  +M   
Sbjct: 398 TLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 457

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G++P+   +  L+    R +       +   M  + V+P     S ++ LL KN
Sbjct: 458 GMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKN 511



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 6/145 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +T NTI+ G C+ G   KA E    M  + I P+ +TYN+LI+GF    + + A  L  +
Sbjct: 709 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK 768

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M + GL  DV+T+NVI++   +  +M EA  ++  MI+ GV PD         Y  LI+G
Sbjct: 769 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDR------STYTSLING 822

Query: 137 LCKIGKLKNARELSQSLTRAGLMPN 161
                 LK A  +   + + G +P+
Sbjct: 823 HVTQNNLKEAFRVHDEMLQRGFVPD 847



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 65/107 (60%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNT+I+G  KE  +D+A  L  +M++  + P+V+TYN +++GF       EAE +
Sbjct: 741 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 800

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            ++M++RG+  D  T+  +++       + EA R+ D M+Q G  PD
Sbjct: 801 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 6/194 (3%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           N   N + ++ L+  +  A    E    F  +  +GL   +   N ++  L K   +D A
Sbjct: 283 NCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLA 342

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
             +   +++ GV      ++N+     +I+ LCK  K++N +     +   G+ P+VVTY
Sbjct: 343 WEIYQEVVRSGV------QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTY 396

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  I+A C    +++A +L   M  KG+ P    +  ++    +  +  +   +L  M K
Sbjct: 397 NTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLK 456

Query: 226 RNVMPYASILSIIV 239
             + P  +  +I++
Sbjct: 457 IGMSPDTATYNILL 470


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  136 bits (343), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTYNTI++GLCKE  + +A ELF +M +  + P+  T+ +LI+G+    + N+A 
Sbjct: 303 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAV 362

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M+ R L+ DVVT+N ++D  CK  +M++   L + MI   + P      N ++YG
Sbjct: 363 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYP------NHISYG 416

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G C +G +  A  L   +   G    ++T N  +   C      KA +   +M +K
Sbjct: 417 ILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 476

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P+ + + TL+  FI++    +   L+  M+   ++P     ++I++
Sbjct: 477 GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILN 525



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 130/260 (50%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+I+  C++G +++A EL   M  + + P V TYN++I+G C       A+ +
Sbjct: 130 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 189

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--AFCEI------ 125
             EM+  G+  D  T+N+++ E C+N  M +A R+ D M   GV PD  +F  +      
Sbjct: 190 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 249

Query: 126 ---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                + V Y  LI G C+ G +  A ++   +   G + +VVT
Sbjct: 250 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 309

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  ++ LC ++ + +A +LF +M  +GV P+   FTTL+  + +    +K + L   M 
Sbjct: 310 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 369

Query: 225 KRNVMPYASILSIIVDLLVK 244
           +RN+ P     + ++D   K
Sbjct: 370 QRNLKPDVVTYNTLIDGFCK 389



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+IDG CK   ++K  EL+  M    I PN ++Y  LI+G+C     +EA  
Sbjct: 374 KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 433

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+++G ++ ++T N I+   C+     +A   L  M+  G+ PD       + Y  
Sbjct: 434 LWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG------ITYNT 487

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  K   +  A  L   +  +GL+P+V+TYN+ ++      +M +A  + L M  +G
Sbjct: 488 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG 547

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V P+   +T+L+   + +N   +   +   M +R  +P
Sbjct: 548 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 585



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y  +I G C+ G + +A ++  +M ++    +VVTYN++++G C     +EA+ L
Sbjct: 270 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADEL 329

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM +RG+  D  TF  +++   K+  M++A  L ++MIQ  ++PD      +V Y  L
Sbjct: 330 FTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPD------VVTYNTL 383

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +++   EL   +    + PN ++Y I I+  CN   + +A  L+ +M  KG 
Sbjct: 384 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 443

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               +   T++  + R     K  E L +M  + ++P     + +++  +K E
Sbjct: 444 EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 496



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N+++ GL K G+VD A E++ ++    +  NV T N +I+  C        +    +M +
Sbjct: 66  NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 125

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           +G+  DVVT+N +++  C+   ++EA  L+D M   G++P  F       Y  +I+GLCK
Sbjct: 126 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVF------TYNAIINGLCK 179

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            GK   A+ +   + + G+ P+  TYNI +   C ++ M  A  +F +M  +GV P+ V 
Sbjct: 180 TGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVS 239

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           F+ L+    +     + ++  R M    + P   I +I++    +N +
Sbjct: 240 FSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 287



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 10/226 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T N +I+ LCK   ++  K     M+++ + P+VVTYN+LI+ +C      EA  L 
Sbjct: 96  NVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM 155

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  +GL+  V T+N I++ LCK  K   A  +LD M++ G+ PD         Y  L+
Sbjct: 156 DSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT------ATYNILL 209

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C+   + +A  +   +   G++P++V+++  I  L  +  +D+A   F DM+  G+A
Sbjct: 210 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 269

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
           P+ VI+T L+  F R    S+ +++   M ++    +V+ Y +IL+
Sbjct: 270 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILN 315



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N + ++ ++    +   + +  E F  +K + +  ++   NSL+ G       + A 
Sbjct: 23  CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 82

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ E++  G+Q +V T N++++ LCKN+K++     L  M + GV PD      +V Y 
Sbjct: 83  EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPD------VVTYN 136

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+  C+ G L+ A EL  S++  GL P V TYN  I+ LC   +  +A  +  +M   
Sbjct: 137 TLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 196

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G++P+   +  L+    R +       +   M  + V+P     S ++ LL KN
Sbjct: 197 GMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKN 250



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 6/145 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +T NTI+ G C+ G   KA E    M  + I P+ +TYN+LI+GF    + + A  L  +
Sbjct: 448 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK 507

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M + GL  DV+T+NVI++   +  +M EA  ++  MI+ GV PD         Y  LI+G
Sbjct: 508 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDR------STYTSLING 561

Query: 137 LCKIGKLKNARELSQSLTRAGLMPN 161
                 LK A  +   + + G +P+
Sbjct: 562 HVTQNNLKEAFRVHDEMLQRGFVPD 586



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 65/107 (60%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNT+I+G  KE  +D+A  L  +M++  + P+V+TYN +++GF       EAE +
Sbjct: 480 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 539

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            ++M++RG+  D  T+  +++       + EA R+ D M+Q G  PD
Sbjct: 540 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 6/194 (3%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           N   N + ++ L+  +  A    E    F  +  +GL   +   N ++  L K   +D A
Sbjct: 22  NCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLA 81

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
             +   +++ GV      ++N+     +I+ LCK  K++N +     +   G+ P+VVTY
Sbjct: 82  WEIYQEVVRSGV------QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTY 135

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  I+A C    +++A +L   M  KG+ P    +  ++    +  +  +   +L  M K
Sbjct: 136 NTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLK 195

Query: 226 RNVMPYASILSIIV 239
             + P  +  +I++
Sbjct: 196 IGMSPDTATYNILL 209


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 6/230 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           + KPN  T   II G CKEG + +A     +MK+  ++PN V +NSLI G+    D N  
Sbjct: 228 IVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGV 287

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           +     M + G++ DVVTF+ IM+       M+    + + M++ G+ PD      I AY
Sbjct: 288 DEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPD------IHAY 341

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L  G  + G+ + A  L  S+++ G+ PNVV +   I   C   +MD+A  L   M  
Sbjct: 342 SILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHE 401

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G +PN   + TL+  +    +  K  ELL +M++R V+P  S + ++ D
Sbjct: 402 MGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMSTMQLVAD 451



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 123/271 (45%), Gaps = 44/271 (16%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYA 64
           +E+G  CKP T TYNT+I G    G   ++ +L   M +DEN+ PN  TYN LI  +C  
Sbjct: 119 KEYG--CKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTK 176

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA  +  +M+  G+Q DVVT+N +     +N + + A RL+  M    V+P     
Sbjct: 177 KKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKP----- 231

Query: 125 INIVAYGCLIDGLCKIGKLKNA-------RELS-------------------------QS 152
            N    G +I G CK G +  A       +EL                          ++
Sbjct: 232 -NERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEA 290

Query: 153 LT---RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
           LT     G+ P+VVT++  ++A  +   M+   ++F DM   G+ P+   ++ L   ++R
Sbjct: 291 LTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVR 350

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             +  K   LL SM K  V P   I + I+ 
Sbjct: 351 AGQPRKAEALLTSMSKYGVQPNVVIFTTIIS 381



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 9/230 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+++  N +I+   + G VD+A ++F +MK+    P   TYN+LI GF  A    E+  
Sbjct: 89  KPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMK 148

Query: 73  LFIEMM--DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           L +EMM  D  ++ +  T+N+++   C  +K++EA  +L  M+  G++PD      +V Y
Sbjct: 149 L-LEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPD------VVTY 201

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +     + G+ + A  L   +    + PN  T  I I   C +  M +A      M+ 
Sbjct: 202 NTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKE 261

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            GV PN V+F +L+  ++   +T+ V E L  M++  + P     S I++
Sbjct: 262 LGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMN 311



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           +++ L  +G   +A+ +F  + +E   P ++TY +L+              L  ++ D G
Sbjct: 28  LMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNG 87

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
           ++ D +  N +++   ++ K+DEA ++   M + G +P          Y  LI G    G
Sbjct: 88  MKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKP------TTSTYNTLIKGFGIAG 141

Query: 142 KLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           +   + +L + + +   + PN  TYNI I A C  +++++A ++   M   G+ P+ V +
Sbjct: 142 RPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTY 201

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            T+  ++ +  ET +   L+  M    V P      II+ 
Sbjct: 202 NTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIIS 241



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           ++GV  +PN V + TII G C  G +D+A  L  +M +   +PN+ TY +LI G+  A  
Sbjct: 366 KYGV--QPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQ 423

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
             +AE L   M +RG+  ++ T  ++ D         EA R+L+
Sbjct: 424 PWKAEELLTTMEERGVVPEMSTMQLVADAWRAIGLFKEANRILN 467


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score =  136 bits (343), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +TVT+N++I GLCK G V +A +LF +M      P+ VTY +LI G+C A +  EA  
Sbjct: 251 RADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVK 310

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G+   V T+N I+ +LC++ KM E  +LL+ M +  V+ D       V    
Sbjct: 311 LRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADH------VTCNT 364

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+  CK G + +A ++ + +  +GL  N  TY   IH  C  +++D+A + F  M   G
Sbjct: 365 LINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAG 424

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +PN  +F+ L+  F +KN    V+ +   + KR + P  ++   ++  L + 
Sbjct: 425 FSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRK 477



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 6/212 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYN I+  LC++G + +  +L  +M +  +  + VT N+LI+ +C       A  +
Sbjct: 322 PGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKV 381

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM+ GLQ +  T+  ++   CK +++DEA      M+  G  P      N   +  L
Sbjct: 382 KKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGFSP------NYSVFSWL 435

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK         +   L + GL P+   Y   I  LC    +D+A  +F  M+ KG+
Sbjct: 436 VDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQKVFDQMQSKGL 495

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
             + +++ TL  +++ + +       L  M K
Sbjct: 496 VGDSLVYATLAYTYLTEGKPVAASNTLDGMAK 527



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T  YN ++    K G   +A+ L  +M    +  +  +YN++I  +C      EA  + 
Sbjct: 183 STHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVR 242

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M   G+++D VT+N ++  LCK  ++ EA +L   M      PD       V Y  LI
Sbjct: 243 DRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDN------VTYTTLI 296

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG C+ G ++ A +L   +   G++P V TYN  +  LC D +M + + L  +M+ + V 
Sbjct: 297 DGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQ 356

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            + V   TL+ ++ ++   +   ++ + M
Sbjct: 357 ADHVTCNTLINAYCKRGHMTSACKVKKKM 385



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+      ++  L +      A+ +F +M    +  +   YN+++H    A D   AE L
Sbjct: 147 PDAHACTALLTALARARMTATARRVFDEMARAGLAVSTHVYNAMLHVCLKAGDAARAEAL 206

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G+  D  ++N ++   CK     EA  + D M + G+R D       V +  L
Sbjct: 207 VTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEGIRAD------TVTWNSL 260

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK G++K A +L   +  A   P+ VTY   I   C    +++A  L  +ME  G+
Sbjct: 261 IHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGM 320

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            P    +  ++       +  +V +LL  MD+R V
Sbjct: 321 LPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKV 355



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 43/233 (18%)

Query: 48  NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
           +P V ++  L+     +   ++A  +F +M  RGL  D      ++  L + R    A R
Sbjct: 113 DPRVPSWLVLV--LAQSARPHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARR 170

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           + D M + G+       ++   Y  ++    K G    A  L   +  AG+  +  +YN 
Sbjct: 171 VFDEMARAGL------AVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNT 224

Query: 168 TI-----------------------------------HALCNDEQMDKAHDLFLDMEVKG 192
            I                                   H LC   ++ +A  LF +M    
Sbjct: 225 VIALYCKKGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQ 284

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             P+ V +TTL+  + R     + ++L   M+   ++P  +  + I+  L ++
Sbjct: 285 ATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCED 337


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTYNTI++GLCKE  + +A ELF +M +  + P+  T+ +LI+G+    + N+A 
Sbjct: 460 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAV 519

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M+ R L+ DVVT+N ++D  CK  +M++   L + MI   + P      N ++YG
Sbjct: 520 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYP------NHISYG 573

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G C +G +  A  L   +   G    ++T N  +   C      KA +   +M +K
Sbjct: 574 ILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 633

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P+ + + TL+  FI++    +   L+  M+   ++P     ++I++
Sbjct: 634 GIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILN 682



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 130/260 (50%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+I+  C++G +++A EL   M  + + P V TYN++I+G C       A+ +
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--AFCEI------ 125
             EM+  G+  D  T+N+++ E C+N  M +A R+ D M   GV PD  +F  +      
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 406

Query: 126 ---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                + V Y  LI G C+ G +  A ++   +   G + +VVT
Sbjct: 407 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 466

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  ++ LC ++ + +A +LF +M  +GV P+   FTTL+  + +    +K + L   M 
Sbjct: 467 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 526

Query: 225 KRNVMPYASILSIIVDLLVK 244
           +RN+ P     + ++D   K
Sbjct: 527 QRNLKPDVVTYNTLIDGFCK 546



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+IDG CK   ++K  EL+  M    I PN ++Y  LI+G+C     +EA  
Sbjct: 531 KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 590

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+++G ++ ++T N I+   C+     +A   L  M+  G+ PD       + Y  
Sbjct: 591 LWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG------ITYNT 644

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  K   +  A  L   +  +GL+P+V+TYN+ ++      +M +A  + L M  +G
Sbjct: 645 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERG 704

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V P+   +T+L+   + +N   +   +   M +R  +P
Sbjct: 705 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 742



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y  +I G C+ G + +A ++  +M ++    +VVTYN++++G C     +EA+ L
Sbjct: 427 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADEL 486

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM +RG+  D  TF  +++   K+  M++A  L ++MIQ  ++PD      +V Y  L
Sbjct: 487 FTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPD------VVTYNTL 540

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK  +++   EL   +    + PN ++Y I I+  CN   + +A  L+ +M  KG 
Sbjct: 541 IDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGF 600

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               +   T++  + R     K  E L +M  + ++P     + +++  +K E
Sbjct: 601 EATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 653



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N+++ GL K G+VD A E++ ++    +  NV T N +I+  C        +    +M +
Sbjct: 223 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 282

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           +G+  DVVT+N +++  C+   ++EA  L+D M   G++P  F       Y  +I+GLCK
Sbjct: 283 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVF------TYNAIINGLCK 336

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            GK   A+ +   + + G+ P+  TYNI +   C ++ M  A  +F +M  +GV P+ V 
Sbjct: 337 TGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVS 396

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           F+ L+    +     + ++  R M    + P   I +I++    +N +
Sbjct: 397 FSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 444



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T N +I+ LCK   ++  K     M+++ + P+VVTYN+LI+ +C      EA  L 
Sbjct: 253 NVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM 312

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  +GL+  V T+N I++ LCK  K   A  +LD M++ G+ PD         Y  L+
Sbjct: 313 DSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT------ATYNILL 366

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C+   + +A  +   +   G++P++V+++  I  L  +  +D+A   F DM+  G+A
Sbjct: 367 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLA 426

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           P+ VI+T L+  F R    S+ +++   M ++    +V+ Y +IL
Sbjct: 427 PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 471



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N + ++ ++    +   + +  E F  +K + +  ++   NSL+ G       + A 
Sbjct: 180 CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 239

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ E++  G+Q +V T N++++ LCKN+K++     L  M + GV PD      +V Y 
Sbjct: 240 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPD------VVTYN 293

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+  C+ G L+ A EL  S++  GL P V TYN  I+ LC   +  +A  +  +M   
Sbjct: 294 TLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 353

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G++P+   +  L+    R +       +   M  + V+P     S ++ LL KN
Sbjct: 354 GMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKN 407



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 6/145 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +T NTI+ G C+ G   KA E    M  + I P+ +TYN+LI+GF    + + A  L  +
Sbjct: 605 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK 664

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M + GL  DV+T+NVI++   +  +M EA  ++  MI+ GV PD         Y  LI+G
Sbjct: 665 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDR------STYTSLING 718

Query: 137 LCKIGKLKNARELSQSLTRAGLMPN 161
                 LK A  +   + + G +P+
Sbjct: 719 HVTQNNLKEAFRVHDEMLQRGFVPD 743



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 65/107 (60%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNT+I+G  KE  +D+A  L  +M++  + P+V+TYN +++GF       EAE +
Sbjct: 637 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 696

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            ++M++RG+  D  T+  +++       + EA R+ D M+Q G  PD
Sbjct: 697 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 6/194 (3%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           N   N + ++ L+  +  A    E    F  +  +GL   +   N ++  L K   +D A
Sbjct: 179 NCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLA 238

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
             +   +++ GV      ++N+     +I+ LCK  K++N +     +   G+ P+VVTY
Sbjct: 239 WEIYQEVVRSGV------QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTY 292

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N  I+A C    +++A +L   M  KG+ P    +  ++    +  +  +   +L  M K
Sbjct: 293 NTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLK 352

Query: 226 RNVMPYASILSIIV 239
             + P  +  +I++
Sbjct: 353 IGMSPDTATYNILL 366


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 128/256 (50%), Gaps = 33/256 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  TYN +ID LCKEG ++ A+ LF QMK+    P++VTYNSLI G       +E   
Sbjct: 53  KRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECIC 112

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +F +M D     DV+T+N +++  CK  +M +A   L  M   G++P         DAFC
Sbjct: 113 IFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFC 172

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           +                     N   Y  LID  CK G L  A +L + + +AG+  NVV
Sbjct: 173 KEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVV 232

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   +  LC + +M +A ++F  M   GVAPN   +T L+  FI+  E     ++L+ M
Sbjct: 233 TYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 292

Query: 224 DKRNVMP----YASIL 235
            ++ + P    Y +IL
Sbjct: 293 KEKCIKPDLLLYGTIL 308



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 118/211 (55%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY+T ID  CKEG + +A + F+ M+   + PN  TY SLI   C A +  EA  
Sbjct: 158 KPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALK 217

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  E++  G++ +VVT+  ++D LC+  +M EA  +   M+  GV P      N   Y  
Sbjct: 218 LVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP------NQETYTA 271

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G  K  +++ A+++ + +    + P+++ Y   +  LCN+ ++++A  L  +++  G
Sbjct: 272 LVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESG 331

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +  N VI+TTLM ++ +  + ++ + LL  M
Sbjct: 332 INTNAVIYTTLMDAYFKSGQATEALTLLEEM 362



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 126/234 (53%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TYN +I+  CK   + KA E   +MK   + PNVVTY++ I  FC      EA 
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F++M    L  +  T+  ++D  CK   + EA +L++ ++Q G++      +N+V Y 
Sbjct: 182 KFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIK------LNVVTYT 235

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DGLC+ G++K A E+ +++  AG+ PN  TY   +H     ++M+ A D+  +M+ K
Sbjct: 236 ALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK 295

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + P+ +++ T++     ++   +   L+  + +  +   A I + ++D   K+
Sbjct: 296 CIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKS 349



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 116/234 (49%), Gaps = 12/234 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+F V  KP +   N ++  L K G  D +++ F  M    I  +V TYN +I   C   
Sbjct: 13  RKFRVFPKPRSC--NALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEG 70

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D   A  LF +M + G   D+VT+N ++D   K   +DE   + + M       DA C+ 
Sbjct: 71  DLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM------KDADCDP 124

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           +++ Y  LI+  CK  ++  A E    +   GL PNVVTY+  I A C +  + +A   F
Sbjct: 125 DVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFF 184

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASIL 235
           +DM    + PN   +T+L+ +  +    ++ +    E+L++  K NV+ Y ++L
Sbjct: 185 VDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 238



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 18/217 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ + Y TI+ GLC E  +++AK L  ++K+  IN N V Y +L+  +  +    EA  
Sbjct: 298 KPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALT 357

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+D            ++D LCKN   + A +L D M+  G+ PD       +AY  
Sbjct: 358 LLEEMLD------------LVDGLCKNNCFEVAKKLFDEMLDKGMMPDK------IAYTA 399

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  K G L+ A  L   +   G+  ++  Y   I  L +  Q+ KA +L  +M  KG
Sbjct: 400 LIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKG 459

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           V P+ V++  L+  +    +  + +EL   M KR ++
Sbjct: 460 VLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMI 496



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 6/209 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +++A E FL+M+   + P   + N+L+H       G+ +   F +M   G++  V T+N+
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++D LCK   ++ A  L   M + G  PD      IV Y  LIDG  K+G L     + +
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPD------IVTYNSLIDGHGKLGLLDECICIFE 115

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +  A   P+V+TYN  I+  C  E+M KA +   +M+  G+ PN V ++T + +F ++ 
Sbjct: 116 QMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEG 175

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVD 240
              + I+    M +  + P     + ++D
Sbjct: 176 MLQEAIKFFVDMRRVALTPNEFTYTSLID 204



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 29/237 (12%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V   PN  TY ++ID  CK G + +A +L  ++    I  NVVTY +L+ G C      E
Sbjct: 190 VALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKE 249

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           AE +F  M++ G+  +  T+  ++    K ++M+ A  +L  M +  ++PD      ++ 
Sbjct: 250 AEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPD------LLL 303

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA------------------ 171
           YG ++ GLC   +L+ A+ L   +  +G+  N V Y   + A                  
Sbjct: 304 YGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEML 363

Query: 172 -----LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
                LC +   + A  LF +M  KG+ P+ + +T L+   ++     + + L   M
Sbjct: 364 DLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRM 420


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 6/241 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            +G  C P  V YN +IDG C+ G + +   L  +M+ + I P VVTY ++IH      D
Sbjct: 107 RWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGD 166

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             + E L  EM  RGL  +V  +N +++ LCK R   +A+ +L+ M++    PD      
Sbjct: 167 LTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPD------ 220

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V +  +I G C+ G ++ A +L +   R GL PN ++Y   IH  C   +   A DL +
Sbjct: 221 VVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLV 280

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +M  +G  P+ +    L+   +   + +  + +   M +R VMP A+I ++++  L K  
Sbjct: 281 EMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKR 340

Query: 247 I 247
           +
Sbjct: 341 M 341



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 121/261 (46%), Gaps = 46/261 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+NT+I G C+EG V +A +L  +     + PN ++Y  LIHGFC   +   A  L
Sbjct: 219 PDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDL 278

Query: 74  FIEMMDRGLQSDVVT-----------------------------------FNVIMDELCK 98
            +EMM RG   D++T                                   +NV++  LCK
Sbjct: 279 LVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCK 338

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
            R +  A  LL+ M++  V+PD F       Y  LIDG  +  KL +AR++ + +     
Sbjct: 339 KRMLSAAKNLLEEMLEQKVQPDKF------IYTTLIDGFVRSDKLSDARKIFEFMEEKAC 392

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P++V YN+ I   C    M +A      M   G  P+   +TTL+  + +K + S  + 
Sbjct: 393 -PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLR 451

Query: 219 LLRSMDKR----NVMPYASIL 235
           LL  M KR    N+  YAS++
Sbjct: 452 LLCDMMKRRCKPNIFTYASLI 472



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 7/230 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN +I GLCK+  +  AK L  +M ++ + P+   Y +LI GF  ++  ++A  +
Sbjct: 324 PDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKI 383

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E M+     D+V +NV++   CK   M EA   +  M + G  PD F       Y  L
Sbjct: 384 F-EFMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEF------TYTTL 436

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K G +  +  L   + +    PN+ TY   I   CN      A DLF  M+ +G+
Sbjct: 437 VDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGL 496

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
            PN V +T L+ S  +K++  +       M   +  P  + +  +V+ LV
Sbjct: 497 FPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLV 546



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 21/219 (9%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TY T++DG  K+G +  +  L   M      PN+ TY SLI G+C   D   AE
Sbjct: 426 CIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAE 485

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M   GL  +VV + V++  L K  K+ +A    + M+         C  N     
Sbjct: 486 DLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLN------HCPPNDATVH 539

Query: 132 CLIDGL--CKIGKL-------KNARELS------QSLTRAGLMPNVVTYNITIHALCNDE 176
            L++GL  C+ G +       K A E S      + L   GL P +  YN  I +LC   
Sbjct: 540 YLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFSLCRHN 599

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            + KA DL   M  KG  P+ + F +L+  F    E+ K
Sbjct: 600 MLGKAMDLKDKMSNKGCLPDPITFLSLLYGFSSAGESGK 638



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLC  G+++  R L ++    G +P  V YN+ I   C    + +   L  +ME KG
Sbjct: 87  MVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKG 146

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P  V +  ++    RK + +KV  LL  M  R + P   I + +++ L K
Sbjct: 147 IIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCK 198


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY TI++G+CK G  D A  L  +M + +I  +VV Y ++I   C     ++A+ 
Sbjct: 42  QPNEVTYGTIVNGMCKMGDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQN 101

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM D+G+  +V+T+N ++D  C   K  +A +LL  MI+  V PD      +V +  
Sbjct: 102 LFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPD------VVTFNA 155

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+   K GK+  A EL + +    + P+ +TYN  I   C   ++D A  +F  M  KG
Sbjct: 156 LINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKG 215

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +PN +   TL+    R       I+LL  M +R ++P
Sbjct: 216 GSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVP 253



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y  IID LCK+G   KA+ LF +M D+ I PNV+TYN +I G C      +AE 
Sbjct: 77  KADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQ 136

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++  +  DVVTFN +++   K  K+ EA  L   M+   + PD       + Y  
Sbjct: 137 LLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDT------ITYNS 190

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK  +L +A+ +   +   G  PNV+T N  I   C  +++D    L  +M  +G
Sbjct: 191 LIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRG 250

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           + P+ V + TL+  F +  + +   +L + M
Sbjct: 251 LVPDSVSYNTLIHGFCQAGDLNAAQDLFQEM 281



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 115/201 (57%), Gaps = 6/201 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ + V +NT+++GLC+EG V +A+ L  +M +    PN VTY ++++G C   D + A 
Sbjct: 6   CQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSAL 65

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M +  +++DVV +  I+D LCK+    +A  L   M   G+ P      N++ Y 
Sbjct: 66  NLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFP------NVLTYN 119

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           C+IDG C  GK  +A +L + +  + + P+VVT+N  I+A   + ++ +A +L+ +M  +
Sbjct: 120 CMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGR 179

Query: 192 GVAPNCVIFTTLMPSFIRKNE 212
            + P+ + + +L+  F + + 
Sbjct: 180 NIFPDTITYNSLIDGFCKHSR 200



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M ++    +VV +N+L++G C      EAE L   M++ G Q + VT+  I++ +CK   
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
            D A  LL  M +  ++ D      +V Y  +ID LCK G    A+ L   +   G+ PN
Sbjct: 61  TDSALNLLRKMDESHIKAD------VVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPN 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V+TYN  I   C+  +   A  L  DM    V P+ V F  L+ +F+++ + S+  EL R
Sbjct: 115 VLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYR 174

Query: 222 SMDKRNVMPYASILSIIVDLLVKNE 246
            M  RN+ P     + ++D   K+ 
Sbjct: 175 EMLGRNIFPDTITYNSLIDGFCKHS 199



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 59/101 (58%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T+TYN++IDG CK   +D AK +F  M  +  +PNV+T N+LI G C A   ++   L
Sbjct: 183 PDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKL 242

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
             EM+ RGL  D V++N ++   C+   ++ A  L   MI 
Sbjct: 243 LHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMIS 283



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            PN +T NT+I G C+   VD   +L  +M    + P+ V+YN+LIHGFC A D N A+ 
Sbjct: 217 SPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQD 276

Query: 73  LFIEMMDR 80
           LF EM+ +
Sbjct: 277 LFQEMISQ 284


>gi|218194640|gb|EEC77067.1| hypothetical protein OsI_15461 [Oryza sativa Indica Group]
          Length = 548

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 127/236 (53%), Gaps = 6/236 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  +P+  TYNT++DG CK G +D A  LF  M  + +    V+YN ++HG   A     
Sbjct: 292 VGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVV 351

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ +F EM++ G+   + T+  ++  LC+N   DEA  LL+ +    V+ D      I+ 
Sbjct: 352 AKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFD------ILT 405

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  +I  + K+G+++ A+EL  +++  GL+P ++TY + I  L  +E  + A +LF  ME
Sbjct: 406 FNIVIRAMFKVGRMQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSME 465

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             G  P+  I   ++   + K E +K    L  +DK+ ++P A+  S+++ L   N
Sbjct: 466 KSGCTPDSCILNEIIRMLLNKGEIAKAGHYLSKIDKKGILPEATTTSLLIYLFSVN 521



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 7/215 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY-NSLIHGFCYANDGNEAEYL 73
           +T  Y  +I G C  G + KAKEL   M  + I P  + +  S+I+  C      E + +
Sbjct: 191 DTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDI 250

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++  G + +++TFN ++D  C    M EA  LLD M   GV PD      I  Y  L
Sbjct: 251 VDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPD------IYTYNTL 304

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK G++ +A  L + +    +    V+YNI +H L    +   A ++F +M   G+
Sbjct: 305 VDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAKEMFHEMIESGM 364

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           A +   + T++    R N T +   LL  +   NV
Sbjct: 365 AVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNV 399



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           ++D+A      MI  GV       ++   YGCLI G C  G L  A+EL   +   G+ P
Sbjct: 172 RLDDAMEKFKHMIDIGV------PLDTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPP 225

Query: 161 NVVTYNIT-IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
             + +  + I+ LC + ++ +  D+   +   G  PN + F +L+  +       + + L
Sbjct: 226 PCIKFFTSIINNLCKEGRVAEGKDIVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGL 285

Query: 220 LRSMDKRNVMPYASILSIIVD 240
           L SM+   V P     + +VD
Sbjct: 286 LDSMESVGVEPDIYTYNTLVD 306



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K + +T+N +I  + K G + +AKELF  +    + P ++TY  +I         
Sbjct: 395 FSMNVKFDILTFNIVIRAMFKVGRMQEAKELFAAISTYGLVPTILTYRVMITNLIKEESF 454

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            +A+ LF  M   G   D    N I+  L    ++ +A   L  + + G+ P+A
Sbjct: 455 EDADNLFSSMEKSGCTPDSCILNEIIRMLLNKGEIAKAGHYLSKIDKKGILPEA 508



 Score = 37.4 bits (85), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           G  ++ +L +A E  + +   G+  +   Y   I   CN   + KA +L  DM  KG+ P
Sbjct: 166 GTGRLDRLDDAMEKFKHMIDIGVPLDTAVYGCLIQGQCNRGDLVKAKELISDMLSKGIPP 225

Query: 196 NCVIFTT 202
            C+ F T
Sbjct: 226 PCIKFFT 232


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN IID LCK   V+ A + F +++ + I PNVVTY +L++G C ++  ++A  
Sbjct: 187 KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAAR 246

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ + +  +V+T++ ++D   KN K+ EA  L + M++  + PD      IV Y  
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD------IVTYSS 300

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLC   ++  A ++   +   G + +VV+YN  I+  C  ++++    LF +M  +G
Sbjct: 301 LVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N V + TL+  F +  +  K  E    MD   + P     +I++  L  N
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDN 413



 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY  +++GLC       A  L   M  + I PNV+TY++L+  F       EA+ 
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 281

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+   +  D+VT++ +++ LC + ++DEA ++ DLM+  G      C  ++V+Y  
Sbjct: 282 LFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKG------CLADVVSYNT 335

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK  ++++  +L + +++ GL+ N VTYN  I        +DKA + F  M+  G
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           ++P+   +  L+       E  K + +   M KR    +++ Y +++
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 20/242 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT  ++++G C+   V  A  L  +M +    P++V YN++I   C     N+A  
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFD 211

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F E+  +G++ +VVT+  +++ LC + +  +A RLL  MI+  + P      N++ Y  
Sbjct: 212 FFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP------NVITYSA 265

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+D   K GK+  A+EL + + R  + P++VTY+  ++ LC  +++D+A+ +F  M  KG
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKG 325

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
              + V + TL+  F +       ++L R M +R               LV N ++ N++
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG--------------LVSNTVTYNTL 371

Query: 253 PQ 254
            Q
Sbjct: 372 IQ 373



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+++++GLC    +D+A ++F  M  +    +VV+YN+LI+GFC A    +   L
Sbjct: 293 PDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 352

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL S+ VT+N ++    +   +D+A      M   G+ PD      I  Y  L
Sbjct: 353 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD------IWTYNIL 406

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC  G+L+ A  + + + +  +  ++VTY   I  +C   ++++A  LF  + +KG+
Sbjct: 407 LGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL 466

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
            P+ V +TT+M     K    +V  L   M +  +M     LS
Sbjct: 467 KPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 509



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V+YNT+I+G CK   V+   +LF +M    +  N VTYN+LI GF  A D ++A+
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F +M   G+  D+ T+N+++  LC N ++++A  + + M +  +      +++IV Y 
Sbjct: 386 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM------DLDIVTYT 439

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G+CK GK++ A  L  SL+  GL P++VTY   +  LC    + +   L+  M+ +
Sbjct: 440 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499

Query: 192 GVAPN 196
           G+  N
Sbjct: 500 GLMKN 504



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 118/226 (52%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +N ++  + K    D    L  +M+   I  ++ T+N +I+ FC     + A  +
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G + D VT   +++  C+  ++ +A  L+D M++ G +PD      IVAY  +
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPD------IVAYNAI 196

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK  ++ +A +  + + R G+ PNVVTY   ++ LCN  +   A  L  DM  K +
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            PN + ++ L+ +F++  +  +  EL   M + ++ P    Y+S++
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLV 302



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 6/211 (2%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A +LF  M      P++V +N L+         +    L  +M   G+++D+ TFN++++
Sbjct: 69  AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             C   ++  A  +L  M++ G  PD       V  G L++G C+  ++ +A  L   + 
Sbjct: 129 CFCCCFQVSLALSILGKMLKLGYEPDR------VTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
             G  P++V YN  I +LC  ++++ A D F ++E KG+ PN V +T L+      +  S
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               LL  M K+ + P     S ++D  VKN
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKN 273



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 84  SDVVTFNVIMDELCKNR----KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           S  V+   + + L K R    K+++A  L   M++    P      +IV +  L+  + K
Sbjct: 44  SSSVSGGDLRERLSKTRLRDIKLNDAIDLFSDMVKSRPFP------SIVDFNRLLSAIVK 97

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           + K      L + +   G+  ++ T+NI I+  C   Q+  A  +   M   G  P+ V 
Sbjct: 98  LKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVT 157

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +L+  F R+N  S  + L+  M +    P     + I+D L K +
Sbjct: 158 IGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTK 204



 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT 53
           KP+ VTY T++ GLC +G + + + L+ +MK E +  N  T
Sbjct: 467 KPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT 507


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 129/244 (52%), Gaps = 37/244 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+IDGLCK   VD+AK +F QM D+ + P+  TYN LIHG+       E   L
Sbjct: 337 PDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRL 396

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE--------- 124
             EM    L+ D   + +++D LCKN +  EA  + D +I+ G++PDA  +         
Sbjct: 397 LEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKM 456

Query: 125 ------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI---HALCND 175
                  N+V YG LID LCK+G++ +A               ++ +N  I   + LC  
Sbjct: 457 RQQGLSPNVVNYGALIDALCKLGRVDDA---------------ILKFNQMINEVYGLCTV 501

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN---ETSKVIEL-LRSMDKRNVMPY 231
           E+ +KA +L  +M  +G+  + V+F TLM    R+    E  ++IEL LR   + +V+ Y
Sbjct: 502 EKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISY 561

Query: 232 ASIL 235
            +++
Sbjct: 562 NTLV 565



 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 134/247 (54%), Gaps = 8/247 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TYNT++ G CK   +D A  L  +M      P+VVTYN+++HG       +EA+ 
Sbjct: 590 KPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKE 649

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++ M++   Q D+ T+N+I++ LCKN  +DEA ++   +   G+      +++I+ +  
Sbjct: 650 LYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGL------QLHIITFNI 703

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  L K GK ++A +L  +++  GL+P+V TY +    L  +  +++   LF  ME  G
Sbjct: 704 MIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENG 763

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS--LN 250
            APN  +   L+  F+ + + S+    L  +D++N    AS  S+++ L  + E      
Sbjct: 764 TAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRGEYQQLAK 823

Query: 251 SIPQFNR 257
           S+P+  R
Sbjct: 824 SLPEKYR 830



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V +NT++  LC+EG V +A+ L   M    + P+V++YN+L+ G C     +EA  L 
Sbjct: 522 DVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLL 581

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+  GL+ +  T+N ++   CK R++D+A  LL  M+  G  PD      +V Y  ++
Sbjct: 582 DVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPD------VVTYNTIL 635

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GL + G+   A+EL  ++  +    ++ TYNI ++ LC +  +D+A  +F  +  KG+ 
Sbjct: 636 HGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQ 695

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + + F  ++ + ++  +    ++L  ++    ++P      +I + L+K
Sbjct: 696 LHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIK 745



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 29/255 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVD-----------------------KAKELFLQMKDENINPN 50
           PN V Y  +ID LCK G VD                       KA+EL  +M D+ I  +
Sbjct: 463 PNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLD 522

Query: 51  VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
           VV +N+L+   C      EA+ L   M+  G++ DV+++N ++D  C   + DEA +LLD
Sbjct: 523 VVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLD 582

Query: 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170
           +M+  G++P+ F       Y  L+ G CK  ++ +A  L + +   G  P+VVTYN  +H
Sbjct: 583 VMVSIGLKPNEF------TYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILH 636

Query: 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            L    +  +A +L+L+M       +   +  ++    + N   +  ++ +S+  + +  
Sbjct: 637 GLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQL 696

Query: 231 YASILSIIVDLLVKN 245
           +    +I++  L+K 
Sbjct: 697 HIITFNIMIGALLKG 711



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 8/243 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE      P+  TY+ +I   C+ G ++    +F  +       N + +N L+ G C A 
Sbjct: 185 RECSDKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAK 244

Query: 66  DGNEAE-YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI--QGGVRPDAF 122
             +EA   L   M + G   +VV++N ++   C   + +EA  LL +M   QG       
Sbjct: 245 RLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQG-----LS 299

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           C  ++V+Y  +I+G  + G++  A  L   +   G+ P+VVTYN  I  LC  + +D+A 
Sbjct: 300 CPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAK 359

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            +F  M  KGV P+   +  L+  ++   +  +V+ LL  M   ++ P   I ++++D L
Sbjct: 360 AVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYL 419

Query: 243 VKN 245
            KN
Sbjct: 420 CKN 422



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 98/211 (46%), Gaps = 19/211 (9%)

Query: 50  NVVTYNSLIHGFCYANDGNEA--EYLFIEMMDRGLQS-------DVVTFNVIMDELCKNR 100
           +V  +N L+     A+  +      L I + DR ++        D  T+++++   C+  
Sbjct: 150 SVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVRECSDKVAPDRCTYSILIGCFCRMG 209

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE-LSQSLTRAGLM 159
           +++    +  L+++ G R      +N + +  L+ GLC   +L  A   L   +   G  
Sbjct: 210 RLEHGFAVFGLILKTGWR------VNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCT 263

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKGVA--PNCVIFTTLMPSFIRKNETSKV 216
           PNVV+YN  +   CN+ + ++A +L   M + +G++  P+ V + T++  F R+ +  K 
Sbjct: 264 PNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKA 323

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
             L   M  R + P     + ++D L K ++
Sbjct: 324 YNLFLQMIDRGIPPDVVTYNTVIDGLCKAQV 354


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 129/228 (56%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTY T+I   CK   V+++  L+ +M    I P+VVT +S+++GFC      EA  
Sbjct: 318 QPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAV 377

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM + GL  + V++  I++ L K+ ++ EA  L   M+  G+  D      IV    
Sbjct: 378 LFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFD------IVTCTT 431

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DGL K+GK K A E+ +++ +  L PN VTY+  +   C   +M+ A  +   ME + 
Sbjct: 432 VMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEH 491

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V PN + F++++  + +K   SK +++LR M +RNVMP   + +I++D
Sbjct: 492 VPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILID 539



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +T+++II+G  K+G + KA ++  +M   N+ PN + Y  LI G+  A + + A+  
Sbjct: 494 PNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDF 553

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  R L+   V F+++++ L +  +MDEA  L+  M   G+ PD      IV Y  L
Sbjct: 554 CKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPD------IVNYASL 607

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K G    A  + Q +    +  +VV YN  I  L    + D  +     +E+ G+
Sbjct: 608 IDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIEL-GL 666

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           AP+C+ + T++ ++  K +T   +++L  M    +MP A   +I++  L K 
Sbjct: 667 APDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKT 718



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT ++I+ G C+ G + +A  LF +M +  ++PN V+Y ++I+    +    EA  L
Sbjct: 354 PDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNL 413

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ RG+  D+VT   +MD L K  K  EA  + + +++  + P      N V Y  L
Sbjct: 414 QSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAP------NCVTYSAL 467

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK+GK++ A  + Q + +  + PNV+T++  I+       + KA D+  +M  + V
Sbjct: 468 LDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNV 527

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN +++  L+  + +  E     +  + M  R +       ++I D+L+ N
Sbjct: 528 MPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEES----NVIFDILLNN 575



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 25/250 (10%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTYNT+I G C++G VD+   L  +M    +  + +T N L+ G+C       AE++ 
Sbjct: 161 DNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVM 220

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             ++D G+  DV+  N ++D  C+   M +AT L    I+   R D   +I+IV Y  L+
Sbjct: 221 YNLVDGGVTKDVIGLNTLIDGYCEAVLMSQATEL----IENSWRSDV--KIDIVTYNTLL 274

Query: 135 DGLCKIGKLKNARELSQSLTR-------------------AGLMPNVVTYNITIHALCND 175
              CK G L  A  L   +                       L P +VTY   I A C  
Sbjct: 275 KAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKF 334

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
             ++++H L+  M + G+ P+ V  ++++  F R  + ++   L R M +  + P     
Sbjct: 335 VGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSY 394

Query: 236 SIIVDLLVKN 245
           + I++ L K+
Sbjct: 395 ATIINSLFKS 404



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 120/267 (44%), Gaps = 47/267 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y ++IDG  KEG    A  +  +MK++NI  +VV YN+LI G        +  Y+
Sbjct: 599 PDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGK-YDPRYV 657

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M++ GL  D +T+N I++  C   K ++A  +L+ M   G+ P+A      V Y  L
Sbjct: 658 CSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNA------VTYNIL 711

Query: 134 IDGLCKIG------------------------------------KLKNARELSQSLTRAG 157
           I GLCK G                                    +LK  + +   + + G
Sbjct: 712 IGGLCKTGFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRG 771

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF----IRKNET 213
           +  ++VTYN  I   C    ++KA   +  M V G+APN   + TL+       + +   
Sbjct: 772 ISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMM 831

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVD 240
            +  +L+  M++R ++P A+   I+V 
Sbjct: 832 EETEKLVSEMNERGLVPNAATYDILVS 858



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 118/285 (41%), Gaps = 50/285 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC----------- 62
           P+ +TYNTII+  C +G  + A ++  +MK   I PN VTYN LI G C           
Sbjct: 668 PDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPITH 727

Query: 63  ------YANDGNEAEYLFI-------------------EMMDRGLQSDVVTFNVIMDELC 97
                 Y+      + L I                   EM+ RG+ +D+VT+N ++   C
Sbjct: 728 KFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYC 787

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG----KLKNARELSQSL 153
               +++A +    M   G+ P      NI  Y  L+ GL   G     ++   +L   +
Sbjct: 788 TGSHVEKALKTYSQMFVDGIAP------NITTYNTLLGGLSNAGLMEEMMEETEKLVSEM 841

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              GL+PN  TY+I +          K   L ++M  KG  P    +  L+  + +  + 
Sbjct: 842 NERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKM 901

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258
            +  ELL  +  +  +P     S   D+L    ++L+  P+ +R 
Sbjct: 902 IEARELLNDLLTKGRIPN----SFTYDILTCGWLNLSYEPEIDRS 942



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 19/185 (10%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN----DGNEAEY 72
           VTYN +I G C    V+KA + + QM  + I PN+ TYN+L+ G   A        E E 
Sbjct: 777 VTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEK 836

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCK--NRKMDEATRLLDL-MIQGGVRPDAFCEINIVA 129
           L  EM +RGL  +  T+++++    +  NRK    T +L + MI  G  P       +  
Sbjct: 837 LVSEMNERGLVPNAATYDILVSGYGRVGNRK---KTIILHIEMITKGFVP------TLKT 887

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN---DEQMDKAHDLFL 186
           Y  LI    K GK+  AREL   L   G +PN  TY+I      N   + ++D++     
Sbjct: 888 YNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGWLNLSYEPEIDRSLKRSY 947

Query: 187 DMEVK 191
           ++EVK
Sbjct: 948 EIEVK 952



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 60/277 (21%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH------ 59
           R  G+V  P    +NT++      G V + K ++  M    + P+V + N L+H      
Sbjct: 86  RALGLV--PTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVG 143

Query: 60  ---------------------------GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
                                      GFC     ++   L  EM+ RGL  D +T N++
Sbjct: 144 DLDLALGYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNIL 203

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +   C+   +  A  ++  ++ GGV  D      ++    LIDG C+   +  A EL ++
Sbjct: 204 VKGYCRIGLVQYAEWVMYNLVDGGVTKD------VIGLNTLIDGYCEAVLMSQATELIEN 257

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-------------------EVKGV 193
             R+ +  ++VTYN  + A C    + +A  LF ++                   E+K +
Sbjct: 258 SWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNL 317

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P  V +TTL+ ++ +     +   L + M    +MP
Sbjct: 318 QPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMP 354



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 12/205 (5%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A   F  M+   + P +  +N+L++ F  +   ++ + ++ +M+  G+  DV + NV++ 
Sbjct: 78  ASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVH 137

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
            LCK   +D A         G +R +   +I+ V Y  +I G C+ G +     L   + 
Sbjct: 138 SLCKVGDLDLAL--------GYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMV 189

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           + GL  + +T NI +   C    +  A  +  ++   GV  + +   TL+  +      S
Sbjct: 190 KRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAVLMS 249

Query: 215 KVIELL----RSMDKRNVMPYASIL 235
           +  EL+    RS  K +++ Y ++L
Sbjct: 250 QATELIENSWRSDVKIDIVTYNTLL 274


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 10/223 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN++I+GL   G +D+A  L+ +M    + PN+VT+N+LI+GFC      EA  
Sbjct: 305 KPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARK 364

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF ++ ++ L  + +TFN ++D  CK   M+E   L + M+  G+ P      N+  Y C
Sbjct: 365 LFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFP------NVSTYNC 418

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+   ++ A++L   +    L  +VVTYNI I   C D +  KA  L  +M   G
Sbjct: 419 LIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVG 478

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPY 231
           V PN V + TLM  +  +      +++   M+K     NV+ Y
Sbjct: 479 VKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTY 521



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 9/237 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE--- 69
           +PN  T+N  I+GLCK G ++KA+++   +K    +PN+VTYN+LI G C      +   
Sbjct: 197 QPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYR 256

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ +  EM+   +  + +TFN ++D  CK+  +  A    + M + G++P      NIV 
Sbjct: 257 ADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKP------NIVT 310

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI+GL   GKL  A  L   +   GL PN+VT+N  I+  C  + + +A  LF D+ 
Sbjct: 311 YNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIA 370

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            + + PN + F T++ +F +     +   L  SM    + P  S  + ++  L +N+
Sbjct: 371 EQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQ 427



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  KPN VT+N +I+G CK+  + +A++LF  + ++++ PN +T+N++I  FC A    
Sbjct: 336 GLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMME 395

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           E   L   M+D G+  +V T+N ++  LC+N+ +  A +LL+ M    ++ D      +V
Sbjct: 396 EGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKAD------VV 449

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI G CK G+   A +L   +   G+ PN VTYN  +   C +  +  A  +   M
Sbjct: 450 TYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQM 509

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           E +G   N V +  L+  F +  +      LL  M ++ + P  +   ++
Sbjct: 510 EKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++  L K     + + ++ +M    I PN+ T+N  I+G C A   N+AE +  ++  
Sbjct: 169 NPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKA 228

Query: 80  RGLQSDVVTFNVIMDELCKN---RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
            G   ++VT+N ++D  CK     KM  A  +L  M+   + P      N + +  LIDG
Sbjct: 229 WGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICP------NEITFNTLIDG 282

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK   +  A+   + + R GL PN+VTYN  I+ L N+ ++D+A  L+  M   G+ PN
Sbjct: 283 FCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPN 342

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V F  L+  F +K    +  +L   + +++++P A   + ++D   K
Sbjct: 343 IVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCK 390



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 38/204 (18%)

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRP--------------------DAFCEI--NIVA 129
            +D+L KN K   ++    L++ GG RP                     + CE+   +  
Sbjct: 100 FLDKLVKNEKHTVSSVFHSLLL-GGDRPCANALITDMLVLAYVTNLEIHSACEVFRRVQD 158

Query: 130 YGC---------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           YG          L+  L K  +    + + + + +  + PN+ T+NI I+ LC   +++K
Sbjct: 159 YGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNK 218

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE---LLRSMDKRNVMPYASILSI 237
           A D+  D++  G +PN V + TL+    +K    K+     +L+ M    + P     + 
Sbjct: 219 AEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNT 278

Query: 238 IVDLLVKNEISL---NSIPQFNRQ 258
           ++D   K+E  L   N+  +  RQ
Sbjct: 279 LIDGFCKDENVLAAKNAFEEMQRQ 302


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 6/211 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y+ +I+G CK   VDKA  LF +M+   I P+ VTYNSLI G C +   + A  L  EM 
Sbjct: 339 YSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMR 398

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           D G  +D++T+N ++D LCKN  +D+A  L+  +   G++ D +       Y  LIDGLC
Sbjct: 399 DSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMY------TYNILIDGLC 452

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G+LK+A+ + Q L   G    V TY I I+ LC +  +++A  L   ME  G  P+ V
Sbjct: 453 KQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAV 512

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              T++ +    ++  +  +LLR M  R ++
Sbjct: 513 TCETIIRALFENDKNERAEKLLREMIARGLL 543



 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 128/240 (53%), Gaps = 25/240 (10%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G +   + V Y+TIIDGLCK+  V+ A EL+ +M  + I+P VVT NSLI+G+C      
Sbjct: 204 GKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFK 263

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM+ + +  DV TFN+++D LCK  K+ EA   + +M++ GV PD      +V
Sbjct: 264 EAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPD------VV 317

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+ +               Y+I I+  C  + +DKA  LF +M
Sbjct: 318 TYSSLMDGYCLVNEVNKAKHV---------------YSIVINGFCKIKMVDKALSLFYEM 362

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI--IVDLLVKNE 246
             + +AP+ V + +L+    +    S   EL+  M  R+    A I++   ++D L KN 
Sbjct: 363 RCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEM--RDSGQPADIITYNSLIDALCKNH 420



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 26/253 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY- 72
           P+  T+N ++D LCKEG + +AK     M  E + P+VVTY+SL+ G+C  N+ N+A++ 
Sbjct: 279 PDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHV 338

Query: 73  -------------------LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
                              LF EM  R +  D VT+N ++D LCK+ ++  A  L+D M 
Sbjct: 339 YSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMR 398

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             G   D      I+ Y  LID LCK   +  A  L + +   G+  ++ TYNI I  LC
Sbjct: 399 DSGQPAD------IITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLC 452

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
              ++  A  +F D+ +KG       +T ++     +   ++   LL  M+    +P A 
Sbjct: 453 KQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAV 512

Query: 234 ILSIIVDLLVKNE 246
               I+  L +N+
Sbjct: 513 TCETIIRALFEND 525



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 104/181 (57%), Gaps = 8/181 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN++IDGLCK G +  A EL  +M+D     +++TYNSLI   C  +  ++A  L
Sbjct: 369 PDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIAL 428

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             ++ D+G+Q D+ T+N+++D LCK  ++ +A  +  DL+I+G         + +  Y  
Sbjct: 429 VKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKG-------YNLTVWTYTI 481

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLC  G L  A  L   +   G +P+ VT    I AL  +++ ++A  L  +M  +G
Sbjct: 482 MINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFENDKNERAEKLLREMIARG 541

Query: 193 V 193
           +
Sbjct: 542 L 542



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +  I+  L K         LF Q++   I PN+V+ + LI+ +C+      A  +
Sbjct: 69  PSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSI 128

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +++  G   + +T   ++   C N K+ EA    D ++  G         N V+YG L
Sbjct: 129 FAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGF------HFNQVSYGTL 182

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCKIG+ + A ++ + +    +  +VV Y+  I  LC D+ ++ A++L+ +M  K +
Sbjct: 183 INGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRI 242

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P  V   +L+  +    +  +   LLR M  +N+ P     +I+VD L K
Sbjct: 243 SPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCK 293



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V+ + +I+  C  G +  A  +F ++     +PN +T  +L+ GFC  +   EA +
Sbjct: 103 KPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALH 162

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               ++  G   + V++  +++ LCK  +   A ++L   I+G          ++V Y  
Sbjct: 163 FHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLR-QIEG-----KLVSTDVVMYST 216

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK   + +A EL   +    + P VVT N  I+  C   Q  +A  L  +M +K 
Sbjct: 217 IIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKN 276

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+   F  L+ +  ++ +  +    +  M K  VMP     S ++D
Sbjct: 277 INPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMD 324



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
            V+ F  I+  L K +       L   +   G++P      NIV+   LI+  C +G+++
Sbjct: 70  SVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKP------NIVSLSILINCYCHLGQMR 123

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA---HDLFLDMEVKGVAPNCVIFT 201
            A  +   + + G  PN +T    +   C + ++ +A   HD  L +   G   N V + 
Sbjct: 124 FAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLAL---GFHFNQVSYG 180

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           TL+    +  ET   +++LR ++ + V     + S I+D L K+++
Sbjct: 181 TLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKL 226


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 32/254 (12%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+V  P+  TY+++I G CK+G V+KA EL  +M  + I PN+  YN+L+ G C + 
Sbjct: 551 KEKGLV--PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 608

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D   A  LF  M ++GL+ D VT++ ++D  CK+  + EA  L   M   GV+P +F   
Sbjct: 609 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFV-Y 667

Query: 126 NIVAYGC-----------------------------LIDGLCKIGKLKNARELSQSLTRA 156
           N + +GC                             LIDG CK  K++ A +L Q +   
Sbjct: 668 NALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAK 727

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
            +MP+ VTY   I   C   +M++A+ LF +M+ + +  + V +T+LM  + +  ++S+V
Sbjct: 728 QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEV 787

Query: 217 IELLRSMDKRNVMP 230
             L   M  + V P
Sbjct: 788 FALFEKMVAKGVKP 801



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T +  I GL K G V +A ++F ++K++ + P+V TY+SLI GFC   +  +A  L
Sbjct: 522 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 581

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G+  ++  +N ++D LCK+  +  A +L D M + G+ PD+      V Y  +
Sbjct: 582 HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS------VTYSTM 635

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK   +  A  L   +   G+ P+   YN  +H  C +  M+KA +LF +M  KG 
Sbjct: 636 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 695

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           A   + F TL+  + +  +  +  +L + M  + +MP     + ++D   K
Sbjct: 696 A-TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCK 745



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN+ T+  +I+G C+E  + +A EL  +M+  N+ P+ V+Y ++I+G C+  D + A 
Sbjct: 310 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 369

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M   GL+ +VV ++ ++       +++EA RLLD M   GV PD FC      Y 
Sbjct: 370 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFC------YN 423

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  L K GK++ A      +   GL P+ VT+   I       +M +A   F +M   
Sbjct: 424 AIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDH 483

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN  ++T L+    +     + + + R +    V+P     S  +  L+KN
Sbjct: 484 GLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKN 537



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++VTY+T+IDG CK   V +A  LF +M  + + P+   YN+L+HG C   D  +A  
Sbjct: 626 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 685

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +G  +  ++FN ++D  CK+ K+ EA++L   MI   + PD       V Y  
Sbjct: 686 LFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDH------VTYTT 738

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID  CK GK++ A  L + +    L+ + VTY   ++      Q  +   LF  M  KG
Sbjct: 739 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKG 798

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           V P+ V +  ++ +  +++   +  +L   +  + ++   +I  +++  L K E
Sbjct: 799 VKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRE 852



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT+   I G  K G + +A + F +M D  + PN   Y  LI+G   A +  EA  
Sbjct: 451 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 510

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  +   G+  DV T +  +  L KN ++ EA ++   + + G+ PD F       Y  
Sbjct: 511 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVF------TYSS 564

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK G+++ A EL   +   G+ PN+  YN  +  LC    + +A  LF  M  KG
Sbjct: 565 LISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 624

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V ++T++  + +    ++   L   M  + V P++ + + +V
Sbjct: 625 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 671



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y+T+I G   EG +++A+ L   M    + P++  YN++I     A    EA  
Sbjct: 381 KPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAST 440

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----------AF 122
             +E+  RGL+ D VTF   +    K  KM EA +  D M+  G+ P+           F
Sbjct: 441 YLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHF 500

Query: 123 CEINIV----------AYGCL---------IDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
              N++          A G L         I GL K G+++ A ++   L   GL+P+V 
Sbjct: 501 KAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVF 560

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY+  I   C   +++KA +L  +M +KG+APN  I+  L+    +  +  +  +L   M
Sbjct: 561 TYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM 620

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
            ++ + P +   S ++D   K+E
Sbjct: 621 PEKGLEPDSVTYSTMIDGYCKSE 643



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N +TYN +I GLCK G ++KA E+   M      PN  T+  LI G+C  ++   A  L 
Sbjct: 278 NLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELL 337

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  R L    V++  +++ LC  + +  A +LL+ M   G++P      N+V Y  LI
Sbjct: 338 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKP------NVVVYSTLI 391

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G    G+++ AR L   ++ +G+ P++  YN  I  L    +M++A    L+++ +G+ 
Sbjct: 392 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 451

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           P+ V F   +  + +  + ++  +    M    +MP   + +++++
Sbjct: 452 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLIN 497



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 14/231 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT TY  I  GLC+   +++AK  F +M+   + P+    ++LI GF    D +E   +
Sbjct: 207 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 266

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--FCEINIVAYG 131
              M+  G+  +++T+NV++  LCK  KM++A  +L  MI  G +P++  FC        
Sbjct: 267 KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFC-------- 318

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G C+   +  A EL   + +  L+P+ V+Y   I+ LC+ + +  A+ L   M   
Sbjct: 319 LLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFS 378

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           G+ PN V+++TL+  +  +    +   LL  M    V P    Y +I+S +
Sbjct: 379 GLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 429



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            T+++NT+IDG CK   + +A +LF +M  + I P+ VTY ++I   C A    EA  LF
Sbjct: 697 TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLF 756

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM +R L  D VT+  +M    K  +  E   L + M+  GV+PD       V YG +I
Sbjct: 757 KEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDE------VTYGLVI 810

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              CK   L  A +L   +   G++     +++ I ALC  E + +A  L  +M   G+ 
Sbjct: 811 YAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLK 870

Query: 195 PNCVIFTTLMPSFI---RKNETSKVIELLRSM 223
           P+    +TL+ SF    + +E ++V E ++S+
Sbjct: 871 PSLAACSTLVRSFHEAGKMDEATRVFEGVKSL 902



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 6/220 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+    + +IDG  +EG +D+   +   M    I  N++TYN LIHG C      +A  
Sbjct: 241 KPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAE 300

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+  G + +  TF ++++  C+   M  A  LLD M +  + P A      V+YG 
Sbjct: 301 ILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA------VSYGA 354

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLC    L  A +L + +T +GL PNVV Y+  I    ++ ++++A  L   M   G
Sbjct: 355 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSG 414

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           VAP+   +  ++    +  +  +    L  +  R + P A
Sbjct: 415 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDA 454



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 23/216 (10%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V ++ +ID   + G +D+A  +F   K+++I  +++  NSL                   
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLR-----------------S 199

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M ++GL  +  T+ +I   LC+ ++M+EA    + M + G++PD        A   LIDG
Sbjct: 200 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPD------YNACSALIDG 253

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
             + G +     +   +   G+  N++TYN+ IH LC   +M+KA ++   M   G  PN
Sbjct: 254 FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 313

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
              F  L+  + R++   + +ELL  M+KRN++P A
Sbjct: 314 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA 349



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 98/191 (51%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY T+ID  CK G +++A  LF +M++ N+  + VTY SL++G+      +E   L
Sbjct: 731 PDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFAL 790

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+ +G++ D VT+ +++   CK   + EA +L D ++  G+            +  L
Sbjct: 791 FEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKG------TIHDLL 844

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LCK   L  A +L   +   GL P++   +  + +     +MD+A  +F  ++  G+
Sbjct: 845 ITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGL 904

Query: 194 APNCVIFTTLM 204
            P+      L+
Sbjct: 905 VPDTTTLIDLV 915



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT----YNSLIHGFCYANDGN 68
           KP+ VTY  +I   CKE   D   E F +++DE +   ++T    ++ LI   C   D  
Sbjct: 800 KPDEVTYGLVIYAHCKE---DNLVEAF-KLRDEVVGKGMLTKGTIHDLLITALCKREDLT 855

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM + GL+  +   + ++    +  KMDEATR+ + +   G+ PD    I++V
Sbjct: 856 EASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLV 915


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYN IID LCK   +DKA+ +  QM  +   P+ VTY+ +IHG+       EA  
Sbjct: 297 KPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAK 356

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  RGL  ++VT N  +  LCK+ +  EA    D M   G +PD F      +Y  
Sbjct: 357 MFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIF------SYCT 410

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G    G   +   L  S+   G+  N   + I IHA      +D A  +F +M+ +G
Sbjct: 411 LLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V+P+ V ++T++ +F R    +  +E    M  R + P  ++ S I+ 
Sbjct: 471 VSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQ 518



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 125/245 (51%), Gaps = 7/245 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+T+I    + G +  A E F QM    I PN   Y+S+I GFC      +A+ L
Sbjct: 473 PDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKEL 532

Query: 74  FIEMMDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             EM+++G+ + D+V F+ +++ LCK+ ++ +A  + DL    G RP       ++ +  
Sbjct: 533 VSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERP------GVITFNS 586

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C +GK+  A ++  ++   G+ P++VTYN  +     + +++    LF +M+ KG
Sbjct: 587 LIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKG 646

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           V PN V +  ++    R   T    +    M +       SI  II+  L +N  +  +I
Sbjct: 647 VKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAI 706

Query: 253 PQFNR 257
             F +
Sbjct: 707 ILFQK 711



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 120/249 (48%), Gaps = 6/249 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ V Y+T+I G   EG   KA  LF +M  + + P+VVTYN +I   C A   +
Sbjct: 258 GGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMD 317

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +AE +  +M   G Q D VT++ ++       ++ EA ++   M + G+ P      NIV
Sbjct: 318 KAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIP------NIV 371

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
                +  LCK G+ K A E   S+T  G  P++ +Y   +H   ++        LF  M
Sbjct: 372 TCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSM 431

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
           +  G+A NC +FT L+ ++ ++      + +   M ++ V P     S ++    +    
Sbjct: 432 KSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRL 491

Query: 249 LNSIPQFNR 257
            +++ +FN+
Sbjct: 492 TDAMEKFNQ 500



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYNT++DG  K G ++    LF +M+ + + PN VTY  ++ G   A     A  
Sbjct: 613 EPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARK 672

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM++ G    V  + +I+  LC+N   DEA  L   +    V+       +I     
Sbjct: 673 KFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVK------FSITILNT 726

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+ + K+ + + A+EL  +++ +GL+PN  TY + I  L  D  ++ A+++F  ME  G
Sbjct: 727 MINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSG 786

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P   +   ++   + K E +K    L  +D + ++  AS  S+++ L  +
Sbjct: 787 IVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSR 838



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           V  P   TYN ++D  C+    D    LF  +    +  + +T N+L+   CYAN   EA
Sbjct: 152 VAVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEA 211

Query: 71  -EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIV 128
              L   M + G   + V++++++  LC N     A  LL +M  QGG      C  ++V
Sbjct: 212 VNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGA-----CSPDVV 266

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           AY  +I G    G+   A  L   +TR G+ P+VVTYN+ I ALC    MDKA  +   M
Sbjct: 267 AYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQM 326

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              G  P+ V ++ ++  +       +  ++ R M KR ++P
Sbjct: 327 TTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIP 368



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V ++++I+ LCK+G V  A ++F    D    P V+T+NSLI G+C     ++A  
Sbjct: 543 RPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFK 602

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M   G++ D+VT+N ++D   KN ++++   L   M + GV+P      N V YG 
Sbjct: 603 ILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKP------NTVTYGI 656

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GL + G+   AR+    +  +G    V  Y I +  LC +   D+A  LF  +    
Sbjct: 657 MLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMN 716

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V  +  I  T++ +  +     +  EL  ++    ++P  S   +++  L+K+
Sbjct: 717 VKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKD 769



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 65/308 (21%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC----------- 62
           PN VT N+ +  LCK G   +A E F  M  +   P++ +Y +L+HG+            
Sbjct: 368 PNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGL 427

Query: 63  ----------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                                 YA  G  ++A  +F EM  +G+  DVVT++ ++    +
Sbjct: 428 FNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSR 487

Query: 99  NRKMDEATRLLDLMIQGGVRPD---------AFC---------------------EINIV 128
             ++ +A    + M+  G++P+          FC                       +IV
Sbjct: 488 MGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIV 547

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  +I+ LCK G++ +A ++    T  G  P V+T+N  I   C   +MDKA  +   M
Sbjct: 548 FFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAM 607

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
           EV GV P+ V + TL+  + +    +  + L R M ++ V P      I++  L +   +
Sbjct: 608 EVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRT 667

Query: 249 LNSIPQFN 256
           + +  +F+
Sbjct: 668 VAARKKFH 675


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 127/246 (51%), Gaps = 29/246 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN +I  L +EG ++ A+ LF +MK + + P++VTYNSLI G+        A  +
Sbjct: 249 PSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSV 308

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
           F EM D G + DV+T+N +++  CK  ++ +A   L  M Q G++P         DAFC+
Sbjct: 309 FEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCK 368

Query: 125 INIV--------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
             ++                     Y  LID  CKIG L  A +L   + +AG+  N+VT
Sbjct: 369 AGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVT 428

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   +  LC D +M +A +LF  +   G   N  I+T+L   +I+     K +++L  M+
Sbjct: 429 YTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMN 488

Query: 225 KRNVMP 230
           K+N+ P
Sbjct: 489 KKNLKP 494



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ +TYN++I+  CK   + +A E    MK   + PNVVTY++LI  FC A    EA 
Sbjct: 317 CEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEAN 376

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F++M+  GLQ +  T+  ++D  CK   ++EA +L   M Q GV       +NIV Y 
Sbjct: 377 KFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGV------NLNIVTYT 430

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DGLC+ G+++ A EL  +L +AG   N   Y    H     + M+KA D+  +M  K
Sbjct: 431 ALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKK 490

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + P+ +++ T +    R+NE    + ++R M    +   + I + ++D   K
Sbjct: 491 NLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFK 543



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 129/255 (50%), Gaps = 8/255 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           +G ++ G+  +PN VTY+T+ID  CK G + +A + F+ M    + PN  TY SLI   C
Sbjct: 345 HGMKQRGL--QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANC 402

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
              D NEA  L  EM   G+  ++VT+  ++D LC++ +M EA  L   +++ G      
Sbjct: 403 KIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAG------ 456

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
             +N   Y  L  G  K   ++ A ++ + + +  L P+++ Y   I  LC   +++ + 
Sbjct: 457 WTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSM 516

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            +  +M   G+  N  I+TTL+ ++ +  +T++ + LL+ M    +        +++D L
Sbjct: 517 AVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGL 576

Query: 243 VKNEISLNSIPQFNR 257
            K  +   ++  F+ 
Sbjct: 577 CKIGLVQQAVRYFDH 591



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 1   MANGNREFGVVCKP----NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS 56
           M      FG + K     N   Y ++  G  K   ++KA ++  +M  +N+ P+++ Y +
Sbjct: 442 MREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGT 501

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
            I G C  N+  ++  +  EMMD GL ++   +  ++D   K  K  EA  LL  M   G
Sbjct: 502 KIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLG 561

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           ++      I +V YG LIDGLCKIG ++ A      +TR GL PN++ Y   I  LC ++
Sbjct: 562 IK------ITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKND 615

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            +++A +LF +M  KG++P+ +++T+L+   ++     + + L   M
Sbjct: 616 CLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRM 662



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC+P    ++T+ + L   G +++A++ F +M    + P V + N L+H    ++ G  A
Sbjct: 176 VCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLA 235

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              F +M+  GL   V T+N+++  L +   ++ A  L + M   G+RPD      IV Y
Sbjct: 236 LSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPD------IVTY 289

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDG  K+G L  A  + + +  AG  P+V+TYN  I+  C  E++ +A +    M+ 
Sbjct: 290 NSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQ 349

Query: 191 KGVAPNCVIFTTLMPSFIRKN---ETSK-VIELLRSMDKRNVMPYASIL 235
           +G+ PN V ++TL+ +F +     E +K  ++++R   + N   Y S++
Sbjct: 350 RGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLI 398



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ + Y T I GLC++  ++ +  +  +M D  +  N   Y +LI  +       EA  
Sbjct: 493 KPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVN 552

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM D G++  VVT+ V++D LCK   + +A R  D M + G++P      NI+ Y  
Sbjct: 553 LLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQP------NIMIYTA 606

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK   L+ A+ L   +   G+ P+ + Y   I          +A  L   M   G
Sbjct: 607 LIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIG 666

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +  +   +T+L+  F R  +      LL  M ++ ++P
Sbjct: 667 MELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIP 704



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 14/198 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K   VTY  +IDGLCK G V +A   F  M    + PN++ Y +LI G C  +   EA+ 
Sbjct: 563 KITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKN 622

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D+G+  D + +  ++D   K+    EA  L + M++ G+      E+++ AY  
Sbjct: 623 LFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGM------ELDLCAYTS 676

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  + G+++ A+ L   + R G++P+ V     +        +++A  L  DM  +G
Sbjct: 677 LIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRG 736

Query: 193 V--------APNCVIFTT 202
           +         P+C+   T
Sbjct: 737 LISGTIDITVPSCLTAVT 754



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 14/178 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + Y  +IDGLCK   +++AK LF +M D+ I+P+ + Y SLI G     +  EA  
Sbjct: 598 QPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALS 657

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M++ G++ D+  +  ++    +  ++  A  LLD M++ G+ PD    I      C
Sbjct: 658 LRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCI------C 711

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLM--------PNVVTYNITIHALCNDEQMDKAH 182
           L+    ++G +  A  L   + R GL+        P+ +T    +H LC  +     H
Sbjct: 712 LLRKYYELGDINEALALHDDMARRGLISGTIDITVPSCLTAVTKLHKLCASQSGTDFH 769



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L K  K   A    + +  AGL P+V TYN+ I  L  +  ++ A  LF +M+ KG
Sbjct: 222 LLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKG 281

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P+ V + +L+  + +    +  + +   M      P     + +++   K E     I
Sbjct: 282 LRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFE----RI 337

Query: 253 PQ 254
           PQ
Sbjct: 338 PQ 339


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKEG +D+A ELF +M D  + PN VT+ +LIHG C     + A  
Sbjct: 203 QPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ +GL  D++T+N ++  LCK  ++ +   L+D MI  G++PD       ++Y  
Sbjct: 263 IYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDK------ISYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A EL   + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K ++    +LLR M +   +P
Sbjct: 377 LKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVP 414



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 123/224 (54%), Gaps = 10/224 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+LI+G+    D +E   L   M 
Sbjct: 139 FNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G Q DV T++++++ LCK  K+DEA  L + M+  G+ P      N V +  LI G C
Sbjct: 199 ASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVP------NGVTFTTLIHGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K  K+  A E+ + +   GL P+++TYN  I+ LC   ++ + HDL  +M + G+ P+ +
Sbjct: 253 KNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILSII 238
            +TTL+    ++ +    +EL   M + ++    + Y +++S +
Sbjct: 313 SYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCL 356



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 35/140 (25%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV---------------------- 163
           ++  +  L+   CK G+++ A+ +  ++T+ GL P+VV                      
Sbjct: 135 SLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLK 194

Query: 164 -------------TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                        TY+I I+ LC + ++D+A++LF +M   G+ PN V FTTL+    + 
Sbjct: 195 SAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKN 254

Query: 211 NETSKVIELLRSMDKRNVMP 230
            +    +E+ + M  + + P
Sbjct: 255 EKVDLAMEIYKQMLSQGLSP 274



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I  LC+EG    A+++  +M    + P+  TY  +I+ FC   D   A  L  E
Sbjct: 347 VAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLRE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGPVPGVVT 418



 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 9/167 (5%)

Query: 80  RGLQ-SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR-PDAFCEINIVAYGCLIDGL 137
           +G Q SD   F+ +M    ++  + +A +   L  Q  +R P   C         +++ L
Sbjct: 59  KGTQISDFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRK-------VLEHL 111

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
            +    K   +  + +   G   ++  +NI +   C + +M  A  +F  +   G+ P+ 
Sbjct: 112 MEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSV 171

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V F TL+  +I+  +  +   L  +M      P     SI+++ L K
Sbjct: 172 VSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCK 218


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 7/231 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T+N +++ LCKEG + KA+E    M+     PNVV+YN++IHG+    +   A  +   M
Sbjct: 251 TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAM 310

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             +G++ D  T+  ++  +CK  +++EA+ L D M++ G+ P+A      V Y  LIDG 
Sbjct: 311 RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNA------VTYNTLIDGY 364

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G L+ A      + + G+MP+V TYN+ +HAL  + +M +A D+  +M  KG+ P+ 
Sbjct: 365 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA 424

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEI 247
           + +  L+  + R     K  +L   M  + + P + +  S+I  L  +N +
Sbjct: 425 ITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 475



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++ TY ++I G+CKEG +++A  LF +M +  + PN VTYN+LI G+C   D   A  
Sbjct: 316 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFS 375

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM+ +G+   V T+N+++  L    +M EA  ++  M + G+ PDA      + Y  
Sbjct: 376 YRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA------ITYNI 429

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  + G  K A +L   +   G+ P  VTY   I+ L    +M +A DLF  +  +G
Sbjct: 430 LINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG 489

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V+P+ ++F  ++          +   LL+ MD+++V P
Sbjct: 490 VSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPP 527



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 11/240 (4%)

Query: 6   REF-----GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           REF     G+  KPN V+YNTII G    G ++ A+ +   M+ + I P+  TY SLI G
Sbjct: 269 REFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISG 328

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C      EA  LF +M++ GL  + VT+N ++D  C    ++ A    D M++ G+ P 
Sbjct: 329 MCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMP- 387

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                ++  Y  L+  L   G++  A ++ + + + G++P+ +TYNI I+         K
Sbjct: 388 -----SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKK 442

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A DL  +M  KG+ P  V +T+L+    R+N   +  +L   +  + V P   + + +VD
Sbjct: 443 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 502



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 111/193 (57%), Gaps = 8/193 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTY ++I  L +   + +A +LF ++ D+ ++P+V+ +N+++ G C AN   E  +
Sbjct: 456 EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHC-ANGNVERAF 514

Query: 73  LFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           + ++ MDR  +  D VTFN +M   C+  K++EA  LLD M + G++PD       ++Y 
Sbjct: 515 MLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH------ISYN 568

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G  + G +K+A  +   +   G  P ++TYN  I  LC +++ D A +L  +M  K
Sbjct: 569 TLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK 628

Query: 192 GVAPNCVIFTTLM 204
           G++P+   + +L+
Sbjct: 629 GISPDDSTYLSLI 641



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 14/249 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G++  P+ +TYN +I+G  + G   KA +L  +M  + I P  VTY SLI+     N
Sbjct: 416 RKKGII--PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRN 473

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA+ LF +++D+G+  DV+ FN ++D  C N  ++ A  LL  M +  V PD     
Sbjct: 474 RMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDE---- 529

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V +  L+ G C+ GK++ AR L   + R G+ P+ ++YN  I        +  A  + 
Sbjct: 530 --VTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVR 587

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSII-----V 239
            +M   G  P  + +  L+    +  E     ELL+ M  + + P  ++ LS+I     V
Sbjct: 588 DEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 647

Query: 240 DLLVKNEIS 248
           D LV++  S
Sbjct: 648 DTLVEDNAS 656



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +++ ++ ++   C+    D+A + F  MK++ I P + T N ++  F   N    A  L+
Sbjct: 178 SSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLY 237

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM    + S V TFN++++ LCK  K+ +A   +  M   G +P      N+V+Y  +I
Sbjct: 238 AEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKP------NVVSYNTII 291

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G    G ++ AR +  ++   G+ P+  TY   I  +C + ++++A  LF  M   G+ 
Sbjct: 292 HGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV 351

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           PN V + TL+  +  K +  +       M K+ +MP  S  +++V  L
Sbjct: 352 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 399



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 8/235 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+V  P   T N ++    K   ++ A  L+ +M    I+  V T+N +++  C   
Sbjct: 206 KEKGIV--PKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEG 263

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A      M   G + +VV++N I+        ++ A R+LD M   G+ PD++   
Sbjct: 264 KLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY--- 320

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               YG LI G+CK G+L+ A  L   +   GL+PN VTYN  I   CN   +++A    
Sbjct: 321 ---TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 377

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +M  KG+ P+   +  L+ +   +    +  ++++ M K+ ++P A   +I+++
Sbjct: 378 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILIN 432


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 14/242 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G++ +PN V Y+TII  LCK+  V  A +L+ QM  + I+P+V+TYN+L++G        
Sbjct: 112 GLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLK 171

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  LF +M+ + ++ D+ TFN+++D LCK  +M +A  +L +MI+  V PD      ++
Sbjct: 172 EAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPD------VI 225

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG   + +   A  +  ++ R G+ P+V +Y++ I+ LC  + +D+A +L  +M
Sbjct: 226 TYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEM 285

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVK 244
             K +APN V +++L+    +        +L+  M  R    +V+ Y S+L    D L K
Sbjct: 286 HSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLL----DALCK 341

Query: 245 NE 246
           N 
Sbjct: 342 NH 343



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 118/216 (54%), Gaps = 20/216 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y+ +I+GLCK   VD+A  L  +M  +++ PN VTY+SLI G   +    +A  L
Sbjct: 257 PDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDL 316

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +RG  +DV+T+N ++D LCKN ++D+A  LL  +   G++PD      I  Y  L
Sbjct: 317 VNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPD------IYTYTIL 370

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+LK+A+E+ Q L   G       Y++       D   DKA  L   ME  G 
Sbjct: 371 VDGLCKNGRLKDAQEVYQILLIKG-------YHL-------DSLFDKALSLLSKMEDNGC 416

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN V F  L+ +    +   K +ELLR M  R ++
Sbjct: 417 TPNPVTFEILIRALFENDMNDKAVELLREMIARGLL 452



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 12/205 (5%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD------ELCKN 99
           N  P +  +  +       N  +    L  +M  RG+Q+D+V  N++++      ++C N
Sbjct: 3   NPTPTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLN 62

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
            K+ E     D +I  G       ++N V+YG LIDGLCK G+ + A ++ +++    + 
Sbjct: 63  DKVKETLHFHDDVIAKGF------QLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQ 116

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           PNVV Y+  I++LC D+ +  A DL+  M +K ++P+ + + TLM   +      + + L
Sbjct: 117 PNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGL 176

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
              M  +N+ P     +I+VD L K
Sbjct: 177 FNQMLLKNIKPDIYTFNILVDGLCK 201



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 118/242 (48%), Gaps = 14/242 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFV---DKAKELFLQMKDENINP----NVVTYNSLIHGFCYAN 65
           + + V  N +++  C  G V   DK KE  L   D+ I      N V+Y +LI G C A 
Sbjct: 40  QTDLVNLNILVNCFCHLGQVCLNDKVKET-LHFHDDVIAKGFQLNQVSYGTLIDGLCKAG 98

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           +   A  +   +    +Q +VV ++ I+  LCK++ + +A  L   M+   + PD     
Sbjct: 99  ETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVIT-Y 157

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N + YGCLI     +G+LK A  L   +    + P++ T+NI +  LC + +M KA ++ 
Sbjct: 158 NTLMYGCLI-----VGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVL 212

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M  + V P+ + + +LM  +    + +K   +  +M +R V P     S++++ L K 
Sbjct: 213 AVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKT 272

Query: 246 EI 247
           ++
Sbjct: 273 KM 274



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 14/105 (13%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY  ++DGLCK G +  A+E++  +              LI G+   +  ++A  
Sbjct: 361 QPDIYTYTILVDGLCKNGRLKDAQEVYQIL--------------LIKGYHLDSLFDKALS 406

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           L  +M D G   + VTF +++  L +N   D+A  LL  MI  G+
Sbjct: 407 LLSKMEDNGCTPNPVTFEILIRALFENDMNDKAVELLREMIARGL 451



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM---DKA-- 181
           I  +G +   L KI        LS  +   G+  ++V  NI ++  C+  Q+   DK   
Sbjct: 8   IFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKVKE 67

Query: 182 ----HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
               HD   D+  KG   N V + TL+    +  ET   +++LR++D   V P   + S 
Sbjct: 68  TLHFHD---DVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYST 124

Query: 238 IVDLLVKNEISLNSIPQFNR 257
           I+  L K+++ +++   +++
Sbjct: 125 IIYSLCKDKLVIDAFDLYSQ 144


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 7/231 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T+N +++ LCKEG + KA+E    M+     PNVV+YN++IHG+    +   A  +   M
Sbjct: 229 TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAM 288

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             +G++ D  T+  ++  +CK  +++EA+ L D M++ G+ P+A      V Y  LIDG 
Sbjct: 289 RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNA------VTYNTLIDGY 342

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G L+ A      + + G+MP+V TYN+ +HAL  + +M +A D+  +M  KG+ P+ 
Sbjct: 343 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA 402

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEI 247
           + +  L+  + R     K  +L   M  + + P + +  S+I  L  +N +
Sbjct: 403 ITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 453



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++ TY ++I G+CKEG +++A  LF +M +  + PN VTYN+LI G+C   D   A  
Sbjct: 294 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFS 353

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM+ +G+   V T+N+++  L    +M EA  ++  M + G+ PDA      + Y  
Sbjct: 354 YRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA------ITYNI 407

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  + G  K A +L   +   G+ P  VTY   I+ L    +M +A DLF  +  +G
Sbjct: 408 LINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG 467

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V+P+ ++F  ++          +   LL+ MD+++V P
Sbjct: 468 VSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPP 505



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 11/240 (4%)

Query: 6   REF-----GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           REF     G+  KPN V+YNTII G    G ++ A+ +   M+ + I P+  TY SLI G
Sbjct: 247 REFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISG 306

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C      EA  LF +M++ GL  + VT+N ++D  C    ++ A    D M++ G+ P 
Sbjct: 307 MCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMP- 365

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                ++  Y  L+  L   G++  A ++ + + + G++P+ +TYNI I+         K
Sbjct: 366 -----SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKK 420

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A DL  +M  KG+ P  V +T+L+    R+N   +  +L   +  + V P   + + +VD
Sbjct: 421 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVD 480



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 111/193 (57%), Gaps = 8/193 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTY ++I  L +   + +A +LF ++ D+ ++P+V+ +N+++ G C AN   E  +
Sbjct: 434 EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHC-ANGNVERAF 492

Query: 73  LFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           + ++ MDR  +  D VTFN +M   C+  K++EA  LLD M + G++PD       ++Y 
Sbjct: 493 MLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH------ISYN 546

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G  + G +K+A  +   +   G  P ++TYN  I  LC +++ D A +L  +M  K
Sbjct: 547 TLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK 606

Query: 192 GVAPNCVIFTTLM 204
           G++P+   + +L+
Sbjct: 607 GISPDDSTYLSLI 619



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 14/249 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G++  P+ +TYN +I+G  + G   KA +L  +M  + I P  VTY SLI+     N
Sbjct: 394 RKKGII--PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRN 451

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA+ LF +++D+G+  DV+ FN ++D  C N  ++ A  LL  M +  V PD     
Sbjct: 452 RMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDE---- 507

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V +  L+ G C+ GK++ AR L   + R G+ P+ ++YN  I        +  A  + 
Sbjct: 508 --VTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVR 565

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSII-----V 239
            +M   G  P  + +  L+    +  E     ELL+ M  + + P  ++ LS+I     V
Sbjct: 566 DEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 625

Query: 240 DLLVKNEIS 248
           D LV++  S
Sbjct: 626 DTLVEDNAS 634



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +++ ++ ++   C+    D+A + F  MK++ I P + T N ++  F   N    A  L+
Sbjct: 156 SSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLY 215

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM    + S V TFN++++ LCK  K+ +A   +  M   G +P      N+V+Y  +I
Sbjct: 216 AEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKP------NVVSYNTII 269

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G    G ++ AR +  ++   G+ P+  TY   I  +C + ++++A  LF  M   G+ 
Sbjct: 270 HGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV 329

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           PN V + TL+  +  K +  +       M K+ +MP  S  +++V  L
Sbjct: 330 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 377



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 8/235 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+V  P   T N ++    K   ++ A  L+ +M    I+  V T+N +++  C   
Sbjct: 184 KEKGIV--PKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEG 241

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A      M   G + +VV++N I+        ++ A R+LD M   G+ PD++   
Sbjct: 242 KLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY--- 298

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               YG LI G+CK G+L+ A  L   +   GL+PN VTYN  I   CN   +++A    
Sbjct: 299 ---TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 355

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +M  KG+ P+   +  L+ +   +    +  ++++ M K+ ++P A   +I+++
Sbjct: 356 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILIN 410


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 32/254 (12%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+V  P+  TY+++I G CK+G V+KA EL  +M  + I PN+  YN+L+ G C + 
Sbjct: 640 KEKGLV--PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 697

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D   A  LF  M ++GL+ D VT++ ++D  CK+  + EA  L   M   GV+P +F   
Sbjct: 698 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFV-Y 756

Query: 126 NIVAYGC-----------------------------LIDGLCKIGKLKNARELSQSLTRA 156
           N + +GC                             LIDG CK  K++ A +L Q +   
Sbjct: 757 NALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAK 816

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
            +MP+ VTY   I   C   +M++A+ LF +M+ + +  + V +T+LM  + +  ++S+V
Sbjct: 817 QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEV 876

Query: 217 IELLRSMDKRNVMP 230
             L   M  + V P
Sbjct: 877 FALFEKMVAKGVKP 890



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T +  I GL K G V +A ++F ++K++ + P+V TY+SLI GFC   +  +A  L
Sbjct: 611 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 670

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G+  ++  +N ++D LCK+  +  A +L D M + G+ PD+      V Y  +
Sbjct: 671 HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS------VTYSTM 724

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK   +  A  L   +   G+ P+   YN  +H  C +  M+KA +LF +M  KG 
Sbjct: 725 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 784

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           A   + F TL+  + +  +  +  +L + M  + +MP     + ++D   K
Sbjct: 785 ATT-LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCK 834



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TY  ++  LCK G +  AK + ++M ++ +NPN   Y+ +I G C   D +EA  L 
Sbjct: 227 DVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELK 286

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M ++GL  +  T+ +I   LC+ ++M+EA    + M + G++PD        A   LI
Sbjct: 287 RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPD------YNACSALI 340

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  + G +     +   +   G+  N++TYN+ IH LC   +M+KA ++   M   G  
Sbjct: 341 DGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCK 400

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           PN   F  L+  + R++   + +ELL  M+KRN++P A
Sbjct: 401 PNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA 438



 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   Y+ +I+G+C+ G +D+A EL   M ++ + PN  TY  +  G C A   NEA+  
Sbjct: 261 PNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLT 320

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   GL+ D    + ++D   +   +DE  R+ D+M+  G+       IN++ Y  L
Sbjct: 321 FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGI------PINLITYNVL 374

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK GK++ A E+ + +   G  PN  T+ + I   C +  M +A +L  +ME + +
Sbjct: 375 IHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNL 434

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+ V +  ++       + S   +LL  M    + P   + SI++
Sbjct: 435 VPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILI 480



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 6/248 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN+ T+  +I+G C+E  + +A EL  +M+  N+ P+ V+Y ++I+G C+  D + A 
Sbjct: 399 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 458

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M   GL+ +VV +++++       +++EA RLLD M   GV PD FC      Y 
Sbjct: 459 KLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFC------YN 512

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  L K GK++ A      +   GL P+ VT+   I       +M +A   F +M   
Sbjct: 513 AIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDH 572

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ PN  ++T L+    +     + + + R +    V+P     S  +  L+KN     +
Sbjct: 573 GLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEA 632

Query: 252 IPQFNRQK 259
           +  F+  K
Sbjct: 633 LKVFSELK 640



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++VTY+T+IDG CK   V +A  LF +M  + + P+   YN+L+HG C   D  +A  
Sbjct: 715 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 774

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +G  +  ++FN ++D  CK+ K+ EA++L   MI   + PD       V Y  
Sbjct: 775 LFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDH------VTYTT 827

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID  CK GK++ A  L + +    L+ + VTY   ++      Q  +   LF  M  KG
Sbjct: 828 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKG 887

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           V P+ V +  ++ +  +++   +  +L   +  + ++   +I  +++  L K E
Sbjct: 888 VKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRE 941



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT+   I G  K G + +A + F +M D  + PN   Y  LI+G   A +  EA  
Sbjct: 540 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 599

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  +   G+  DV T +  +  L KN ++ EA ++   + + G+ PD F       Y  
Sbjct: 600 IFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVF------TYSS 653

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK G+++ A EL   +   G+ PN+  YN  +  LC    + +A  LF  M  KG
Sbjct: 654 LISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 713

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V ++T++  + +    ++   L   M  + V P++ + + +V
Sbjct: 714 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 760



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y+ +I     EG +++A+ L   M    + P++  YN++I     A    EA  
Sbjct: 470 KPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAST 529

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----------AF 122
             +E+  RGL+ D VTF   +    K  KM EA +  D M+  G+ P+           F
Sbjct: 530 YLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHF 589

Query: 123 CEINIV----------AYGCL---------IDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
              N++          A G L         I GL K G+++ A ++   L   GL+P+V 
Sbjct: 590 KAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVF 649

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY+  I   C   +++KA +L  +M +KG+APN  I+  L+    +  +  +  +L   M
Sbjct: 650 TYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM 709

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
            ++ + P +   S ++D   K+E
Sbjct: 710 PEKGLEPDSVTYSTMIDGYCKSE 732



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 108/212 (50%), Gaps = 9/212 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            T+++NT+IDG CK   + +A +LF +M  + I P+ VTY ++I   C A    EA  LF
Sbjct: 786 TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLF 845

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM +R L  D VT+  +M    K  +  E   L + M+  GV+PD       V YG +I
Sbjct: 846 KEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDE------VTYGLVI 899

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              CK   L  A +L   +   G++     +++ I ALC  E + +A  L  +M   G+ 
Sbjct: 900 YAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLK 959

Query: 195 PNCVIFTTLMPSFI---RKNETSKVIELLRSM 223
           P+     TL+ SF    + +E ++V E ++S+
Sbjct: 960 PSLAACNTLVRSFHEAGKMDEATRVFEGVKSL 991



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 6/220 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+    + +IDG  +EG +D+   +   M    I  N++TYN LIHG C      +A  
Sbjct: 330 KPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAE 389

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+  G + +  TF ++++  C+   M  A  LLD M +  + P A      V+YG 
Sbjct: 390 ILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA------VSYGA 443

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLC    L  A +L + +T +GL PNVV Y+I I A  ++ ++++A  L   M   G
Sbjct: 444 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSG 503

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           VAP+   +  ++    +  +  +    L  +  R + P A
Sbjct: 504 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDA 543



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V ++ +ID   + G +D+A  +F   K+++I  +++  NSL+              ++
Sbjct: 157 SPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVY 216

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+D  +  DV T+  ++  LCK   +  A R+L  M + G+ P+ F       Y  +I
Sbjct: 217 NGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFI------YSLVI 270

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +G+C++G +  A EL +S+   GL+PN  TY I    LC  ++M++A   F +M+  G+ 
Sbjct: 271 EGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK 330

Query: 195 PNCVIFTTLMPSFIRKNETSKVIEL 219
           P+    + L+  F+R+ +  +V+ +
Sbjct: 331 PDYNACSALIDGFMREGDIDEVLRI 355



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 6/191 (3%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+ VTY T+ID  CK G +++A  LF +M++ N+  + VTY SL++G+      +E   L
Sbjct: 820  PDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFAL 879

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            F +M+ +G++ D VT+ +++   CK   + EA +L D ++  G+            +  L
Sbjct: 880  FEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKG------TIHDLL 933

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            I  LCK   L  A +L   +   GL P++   N  + +     +MD+A  +F  ++  G+
Sbjct: 934  ITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGL 993

Query: 194  APNCVIFTTLM 204
             P+      L+
Sbjct: 994  VPDTTTLIDLV 1004



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 6/189 (3%)

Query: 52  VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL 111
           V ++ LI  +      +EA  +F    +  +   ++  N ++ +L K   M+   ++ + 
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNG 218

Query: 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           M+      DA    ++  Y  L+  LCK G L+ A+ +   +   GL PN   Y++ I  
Sbjct: 219 ML------DAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEG 272

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
           +C    +D+A +L   M  KG+ PN   +T +     R    ++       M K  + P 
Sbjct: 273 MCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPD 332

Query: 232 ASILSIIVD 240
            +  S ++D
Sbjct: 333 YNACSALID 341



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT----YNSLIHGFCYANDGN 68
            KP+ VTY  +I   CKE   D   E F +++DE +   ++T    ++ LI   C   D  
Sbjct: 889  KPDEVTYGLVIYAHCKE---DNLVEAF-KLRDEVVGKGMLTKGTIHDLLITALCKREDLT 944

Query: 69   EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            EA  L  EM + GL+  +   N ++    +  KMDEATR+ + +   G+ PD    I++V
Sbjct: 945  EASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLV 1004


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  ++N +I GLC+ G +DKA E F  M +    P++V+YN+LI+GFC  N+ ++   L
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271

Query: 74  FIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             E M+ +G+  DV+T+  I+   CK   M  A+ L D M+  G++P+ F       +  
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDF------TFNV 325

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  K+G +++A  + + +   G +P+VVT+   I   C + ++++   L+ +M+V+ 
Sbjct: 326 LIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRN 385

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++PN   +  L+ +  ++N   +    LR +    V+P   I + ++D   K
Sbjct: 386 LSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCK 437



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 125/239 (52%), Gaps = 11/239 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +G+   P    YN +++ L K+  VD+A  LF +  +    P+V ++N LI G C   + 
Sbjct: 173 YGIKVSP--FVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL--DLMIQGGVRPDAFCEI 125
           ++A   F  M + G   D+V++N +++  C+  ++ +   LL  D++I+G V PD     
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKG-VSPD----- 284

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            ++ Y  +I G CK+G +K A EL   +  +G+ PN  T+N+ I        M  A  ++
Sbjct: 285 -VITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMY 343

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             M + G  P+ V FT+L+  + R+ E ++ ++L   M  RN+ P     +++++ L K
Sbjct: 344 EKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCK 402



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY +II G CK G +  A ELF +M    I PN  T+N LI GF    +   A  +
Sbjct: 283 PDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVM 342

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+  G   DVVTF  ++D  C+  ++++  +L + M    + P      N+  Y  L
Sbjct: 343 YEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSP------NVYTYAVL 396

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ LCK  +++ AR   + L  + ++P    YN  I   C   ++D+A+ +  +M+ K  
Sbjct: 397 INALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKC 456

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ + FT L+     K    + I     M + N +P    ++ ++  L+K
Sbjct: 457 RPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLK 507



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY+ ++  LCK G  D AK +F  M+ + I P+      L+  +      + A+    E+
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
              G++     +N +++ L K   +DEA  L    ++    PD +      ++  LI GL
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVY------SFNILIRGL 224

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL-DMEVKGVAPN 196
           C+IG++  A E  Q++   G  P++V+YN  I+  C   ++ K HDL   DM +KGV+P+
Sbjct: 225 CRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPD 284

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            + +T+++  + +  +     EL   M    + P     ++++D
Sbjct: 285 VITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLID 328



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 9/207 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  T+N +IDG  K G +  A  ++ +M      P+VVT+ SLI G+C   + N+   
Sbjct: 317 KPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLK 376

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM  R L  +V T+ V+++ LCK  ++ EA   L  +    V P  F       Y  
Sbjct: 377 LWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPF------IYNP 430

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK GK+  A  +   +      P+ +T+ I I   C   +M +A   F  M    
Sbjct: 431 VIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEIN 490

Query: 193 VAPNCVIFTTLMPSFIRK---NETSKV 216
             P+ +   +L+   ++    NE S++
Sbjct: 491 CVPDEITINSLISCLLKAGMPNEASQI 517



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+ ++IDG C+EG V++  +L+ +MK  N++PNV TY  LI+  C  N   EA 
Sbjct: 351 CLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREAR 410

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                +    +      +N ++D  CK  K+DEA  ++  M +   RPD       + + 
Sbjct: 411 NFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDK------ITFT 464

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            LI G C  G++  A      +     +P+ +T N  I  L
Sbjct: 465 ILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCL 505



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    YN +IDG CK G VD+A  +  +M+++   P+ +T+  LI G C      EA   
Sbjct: 423 PKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAIST 482

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           F +M++     D +T N ++  L K    +EA+++    +Q
Sbjct: 483 FYKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQ 523



 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ +T+  +I G C +G + +A   F +M + N  P+ +T NSLI     A   NEA 
Sbjct: 456 CRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEAS 515

Query: 72  YL---FIEMMDRGLQS 84
            +    ++ ++ GL S
Sbjct: 516 QIKQAALQKLNLGLSS 531


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 129/228 (56%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTY T+I   CK   V+++  L+ +M    I P+VVT +S+++GFC      EA  
Sbjct: 318 QPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAV 377

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM + GL  + V++  I++ L K+ ++ EA  L   M+  G+  D      IV    
Sbjct: 378 LFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFD------IVTCTT 431

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DGL K+GK K A E+ +++ +  L PN VTY+  +   C   +M+ A  +   ME + 
Sbjct: 432 VMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEH 491

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V PN + F++++  + +K   SK +++LR M +RNVMP   + +I++D
Sbjct: 492 VPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILID 539



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +T+++II+G  K+G + KA ++  +M   N+ PN + Y  LI G+  A + + A+  
Sbjct: 494 PNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDF 553

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  R L+   V F+++++ L +  +MDEA  L+  M   G+ PD      IV Y  L
Sbjct: 554 CKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPD------IVNYASL 607

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K G    A  + Q +    +  +VV YN  I  L    + D  +     +E+ G+
Sbjct: 608 IDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIEL-GL 666

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           AP+C+ + T++ ++  K +T   +++L  M    +MP A   +I++  L K 
Sbjct: 667 APDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKT 718



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT ++I+ G C+ G + +A  LF +M +  ++PN V+Y ++I+    +    EA  L
Sbjct: 354 PDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNL 413

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ RG+  D+VT   +MD L K  K  EA  + + +++  + P      N V Y  L
Sbjct: 414 QSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAP------NCVTYSAL 467

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK+GK++ A  + Q + +  + PNV+T++  I+       + KA D+  +M  + V
Sbjct: 468 LDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNV 527

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN +++  L+  + +  E     +  + M  R +       ++I D+L+ N
Sbjct: 528 MPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEES----NVIFDILLNN 575



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNTII+  C +G  + A ++  +MK   I PN VTYN LI G C      +AE  
Sbjct: 668 PDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESA 727

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+        +T   ++    ++ K D+  ++ + ++  G+      E+++  Y  L
Sbjct: 728 LDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGL------ELSLTVYNTL 781

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I   C++G  + A+ +   + + G+  ++VTYN  I   C    ++KA   +  M V G+
Sbjct: 782 ITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGI 841

Query: 194 APNCVIFTTLMPSF----IRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           APN   + TL+       + +    +  +L+  M++R ++P A+   I+V 
Sbjct: 842 APNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVS 892



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 25/250 (10%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTYNT+I G C++G VD+   L  +M    +  + +T N L+ G+C       AE++ 
Sbjct: 161 DNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVM 220

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             ++D G+  DV+  N ++D  C+   M +AT L    I+   R D   +I+IV Y  L+
Sbjct: 221 YNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATEL----IENSWRSDV--KIDIVTYNTLL 274

Query: 135 DGLCKIGKLKNARELSQSLTR-------------------AGLMPNVVTYNITIHALCND 175
              CK G L  A  L   +                       L P +VTY   I A C  
Sbjct: 275 KAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKF 334

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
             ++++H L+  M + G+ P+ V  ++++  F R  + ++   L R M +  + P     
Sbjct: 335 VGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSY 394

Query: 236 SIIVDLLVKN 245
           + I++ L K+
Sbjct: 395 ATIINSLFKS 404



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 122/295 (41%), Gaps = 51/295 (17%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT--------- 53
           N  + +G++  PN VTYN +I GLCK G V+KA+    +M      P  +T         
Sbjct: 694 NEMKSYGIM--PNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYS 751

Query: 54  --------------------------YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
                                     YN+LI  FC      +A+ +  EM+ RG+ +D+V
Sbjct: 752 RSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLV 811

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG----KL 143
           T+N ++   C    +++A +    M   G+ P      NI  Y  L+ GL   G     +
Sbjct: 812 TYNALIRGYCTGSHVEKALKTYSQMFVDGIAP------NITTYNTLLGGLSNAGLMEEMM 865

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
           +   +L   +   GL+PN  TY+I +          K   L ++M  KG  P    +  L
Sbjct: 866 EETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVL 925

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258
           +  + +  +  +  ELL  +  +  +P     S   D+L    ++L+  P+ +R 
Sbjct: 926 ISDYAKSGKMIEARELLNDLLTKGRIPN----SFTYDILTCGWLNLSYEPEIDRS 976



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 112/277 (40%), Gaps = 60/277 (21%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH------ 59
           R  G+V  P    +NT++      G V + K ++  M    + P+V + N L+H      
Sbjct: 86  RALGLV--PTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVG 143

Query: 60  ---------------------------GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
                                      GFC     ++   L  EM+ RGL  D +T N++
Sbjct: 144 DLDLALGYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNIL 203

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +   C+   +  A  ++  ++ GGV  D      ++    LIDG C+ G +  A EL ++
Sbjct: 204 VKGYCRIGLVQYAEWVMYNLVDGGVTKD------VIGLNTLIDGYCEAGLMSQATELIEN 257

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-------------------EVKGV 193
             R+ +  ++VTYN  + A C    + +A  LF ++                   E+K +
Sbjct: 258 SWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNL 317

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P  V +TTL+ ++ +     +   L + M    +MP
Sbjct: 318 QPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMP 354



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 12/205 (5%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A   F  M+   + P +  +N+L++ F  +   ++ + ++ +M+  G+  DV + NV++ 
Sbjct: 78  ASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVH 137

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
            LCK   +D A         G +R +   +I+ V Y  +I G C+ G +     L   + 
Sbjct: 138 SLCKVGDLDLAL--------GYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMV 189

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           + GL  + +T NI +   C    +  A  +  ++   GV  + +   TL+  +      S
Sbjct: 190 KRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAGLMS 249

Query: 215 KVIELL----RSMDKRNVMPYASIL 235
           +  EL+    RS  K +++ Y ++L
Sbjct: 250 QATELIENSWRSDVKIDIVTYNTLL 274


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 29/273 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN IIDG    G VD+A+E+F  M +++I PN+++YN LI+G+      +EA  +
Sbjct: 316 PDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQV 375

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             E+  +GL+  +VT NV++  L +  +   A    D M+  G  PD +           
Sbjct: 376 CREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFK 435

Query: 124 -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                              + NI  Y  +IDGLCK GKL  A    + L   GL P+V+T
Sbjct: 436 NGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVIT 495

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   I   C +  +D+A D+   ME  G   +   +  ++  F+R N+ S++   L  + 
Sbjct: 496 YTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIA 555

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            ++    A+ + +++D++ ++   LN IP+F+R
Sbjct: 556 GKSFSFEAATVELLMDIIAEDPSLLNMIPEFHR 588



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPNT  Y+ +ID  CK+G +D A  L  +MK ++I P++ TY++LI   C  +       
Sbjct: 210 KPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRT 269

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF+EM+   +  +V TFN ++D LCK  K+++A  ++  MI+ GV PD      ++ Y  
Sbjct: 270 LFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPD------VITYNM 323

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG    G++  ARE+  S+    + PN+++YNI I+     +++D+A  +  ++  KG
Sbjct: 324 IIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKG 383

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P+ V    L+        T         M     +P       ++    KN +   ++
Sbjct: 384 LKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAM 443

Query: 253 PQFNR 257
             F++
Sbjct: 444 SHFHK 448



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C+PN V Y T+++GLCK+G   KA +L   M+  +  PN   Y+ +I  FC     + A
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGA 232

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  EM  + +  D+ T++ ++D LCK  + +    L   MI   + P      N+  +
Sbjct: 233 TSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYP------NVCTF 286

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGLCK GK+++A E+ + +   G+ P+V+TYN+ I       Q+D+A ++F  M  
Sbjct: 287 NSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMIN 346

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           K + PN + +  L+  + R+ +  + +++ R + ++ + P
Sbjct: 347 KSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKP 386



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 115/218 (52%), Gaps = 9/218 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDGNEAEYL 73
           N V +NT++ GL  E  V  A  LF ++  ENI  PN V Y ++++G C      +A + 
Sbjct: 141 NQVIFNTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKA-FD 199

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + +M++G  + +   +++++D  CK+  +D AT LL+ M Q  + PD F       Y  
Sbjct: 200 LLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIF------TYST 253

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK+ + +N R L   +    + PNV T+N  I  LC + +++ A ++   M  KG
Sbjct: 254 LIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKG 313

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V P+ + +  ++  +  + +  +  E+  SM  +++ P
Sbjct: 314 VDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEP 351



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 104/231 (45%), Gaps = 5/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+++ ++  L           LF ++    I  +    + +++  C  +  +    +
Sbjct: 70  PSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSV 129

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
                 +G+  + V FN ++  L    K+ +A  L   +++  +     CE N V YG +
Sbjct: 130 LAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRENI-----CEPNEVMYGTV 184

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCK G  + A +L + + +    PN   Y+I I A C D  +D A  L  +M+ K +
Sbjct: 185 MNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSI 244

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   ++TL+ +  + ++   V  L   M   N+ P     + ++D L K
Sbjct: 245 PPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCK 295



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 51/233 (21%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A  LF QM      P+VV+++ L+    +    +    LF E+    +       ++
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C   + D    +L +  + G+        N V +  L+ GL    K+K+A  L +
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGI------PFNQVIFNTLLRGLFAENKVKDAVHLFK 166

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            L R  +                                    PN V++ T+M    +K 
Sbjct: 167 KLVRENI----------------------------------CEPNEVMYGTVMNGLCKKG 192

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK-----------NEISLNSIP 253
            T K  +LLR M++ +  P   I SI++D   K           NE+   SIP
Sbjct: 193 HTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIP 245


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 8/223 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+V YN  I GLCK G VD AK++F  +     +P+  TY +LIHG+  A + N+A  L
Sbjct: 707 PNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSL 766

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ RGL  +++T+N +++ LCK+  +D A +L D +   G+ P      N+++Y  L
Sbjct: 767 RDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAP------NVISYNIL 820

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G  + A +L   + + G+ P+++TY+  I+  C    M KA +L  +M     
Sbjct: 821 IDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFA 880

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
             N   F  L+   ++  E  K+ +L   M     +P A ++S
Sbjct: 881 DQNIAKFVKLVEGHVKCGEVKKIAKLHNMM--HITIPCAGVIS 921



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 123/267 (46%), Gaps = 41/267 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P + +Y+T++DG C+EG V KA  ++ +M    I  NVVT+NSL+ G C      +A +
Sbjct: 391 EPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALH 450

Query: 73  LFIEMMDRGLQSDVVT-----------------------------------FNVIMDELC 97
           ++  M+ RG+  D V+                                   FN +++  C
Sbjct: 451 VWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFC 510

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  KM EA    + M + G  PD       V Y  LIDG CK+G ++ A ++ + + +  
Sbjct: 511 KMEKMIEAEETFNRMKELGFEPDG------VTYRTLIDGYCKLGNVEEAFKVKEKMEKEA 564

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           ++P++  YN  I  L   ++  +  DL  +M +KG++PN V + TL+  +  +    K  
Sbjct: 565 ILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAF 624

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
                M ++   P   I S IV  L +
Sbjct: 625 TAYFDMIEKGFAPNVIICSKIVSSLYR 651



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 116/252 (46%), Gaps = 41/252 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI--------------- 58
           PN VTY T+I G C EG +DKA   +  M ++   PNV+  + ++               
Sbjct: 602 PNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANML 661

Query: 59  ------------HGFC----YANDGNEAEYLFIEMMDRGLQS----DVVTFNVIMDELCK 98
                       HG+      A+DGN       + +D   +S    + V +N+ +  LCK
Sbjct: 662 LQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCK 721

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
           + K+D+A ++   ++  G  PD F       Y  LI G    G + +A  L   + + GL
Sbjct: 722 SGKVDDAKKIFSSLLLRGFSPDNF------TYCTLIHGYSAAGNVNDAFSLRDEMLKRGL 775

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            PN++TYN  I+ LC    +D+A  LF  + +KG+APN + +  L+  + +   T + ++
Sbjct: 776 APNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALD 835

Query: 219 LLRSMDKRNVMP 230
           L   M K  + P
Sbjct: 836 LRNKMLKEGISP 847



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +I+G CK G V +A+ L ++M D ++ P   +Y++L+ GFC      +A  ++ EM+ 
Sbjct: 363 NALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLR 422

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G+QS+VVT N ++  LC+    ++A  +  LM++ GV PD       V+Y  L+D L K
Sbjct: 423 VGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDE------VSYCTLLDLLFK 476

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           +G+   A  L   +   G   +   +N  I+  C  E+M +A + F  M+  G  P+ V 
Sbjct: 477 MGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVT 536

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + TL+  + +     +  ++   M+K  ++P   + + ++  L K++
Sbjct: 537 YRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSK 583



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
             G+V  P+  T + +++  CK+G+V+ A +   +M       NVVTYNSLI G     D
Sbjct: 211 RLGIV--PDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGD 268

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEI 125
              AE +   M +RG+  + VT  +++   C+  K++EA ++L  M +  G+  D +   
Sbjct: 269 MERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEY--- 325

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
              AYG LIDG C++ K+ +A  L   +   GL  N+   N  I+  C + Q+ +A  L 
Sbjct: 326 ---AYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLL 382

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASIL 235
           + M    + P    ++TLM  F R+   +K I    E+LR   + NV+ + S+L
Sbjct: 383 MRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLL 436



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           N VT   +I G C++  +++A+++  +M + E +  +   Y  LI G+C     ++A  L
Sbjct: 287 NKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRL 346

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++ GL+ ++   N +++  CKN ++ EA RLL  M+   + P+++      +Y  L
Sbjct: 347 RDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESY------SYSTL 400

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG C+ G +  A  +   + R G+  NVVT+N  +  LC     + A  ++  M  +GV
Sbjct: 401 MDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGV 460

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+ V + TL+    +  E  + + L   +  R         + +++   K E  + +  
Sbjct: 461 TPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEE 520

Query: 254 QFNRQK 259
            FNR K
Sbjct: 521 TFNRMK 526



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 117/263 (44%), Gaps = 43/263 (16%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  +E G   +P+ VTY T+IDG CK G V++A ++  +M+ E I P++  YNSLI G  
Sbjct: 523 NRMKELGF--EPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLF 580

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
            +    E   L  EM  +GL  +VVT+  ++   C   ++D+A      MI+ G  P   
Sbjct: 581 KSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAP--- 637

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSL----------------------------- 153
              N++    ++  L ++G++  A  L Q +                             
Sbjct: 638 ---NVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIA 694

Query: 154 ------TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
                 +++  +PN V YNI I  LC   ++D A  +F  + ++G +P+   + TL+  +
Sbjct: 695 DTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGY 754

Query: 208 IRKNETSKVIELLRSMDKRNVMP 230
                 +    L   M KR + P
Sbjct: 755 SAAGNVNDAFSLRDEMLKRGLAP 777



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 25/219 (11%)

Query: 40  LQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM--DRGLQSDVVTFN------- 90
           L  K  N  PNV ++  L+H    A   +E      E++   +   S +V +N       
Sbjct: 83  LASKQSNFRPNVNSHCKLVHILSRARMYDETRSYLNELVTPSKNNYSSLVVWNELVRVFE 142

Query: 91  ----------VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
                     +I+   C+   +  A  + D M + G  P      ++ +   L+  L + 
Sbjct: 143 DFKFSPTVFDMILKIYCEKGMIKNALHVFDNMGKLGCVP------SLRSCNRLLSSLVRK 196

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G+  NA  +   + R G++P+V T +I ++A C D  ++ A D   +M+  G   N V +
Sbjct: 197 GESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTY 256

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +L+   +   +  +   +L+ M +R ++     L++++
Sbjct: 257 NSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLI 295


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  T+NT+I GLCK+G +  A ++   M      PN++TY +L+ GFC  N   EA 
Sbjct: 376 CRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAG 435

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           Y+  EM  +G + +++ +NV++  LCKN K+ +A  +L  M   G +PD F       + 
Sbjct: 436 YVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIF------TFN 489

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCK+ + ++A  L + +   G++ N VTYN  IHA      + +A  L  DM  +
Sbjct: 490 TLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFR 549

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G   + + +  L+ +F +   T K + L   M +++++P
Sbjct: 550 GCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVP 588



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  T+NT+I GLCK    + A  L+  M  + +  N VTYN+LIH F       EA 
Sbjct: 481 CKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEAL 540

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+ RG   D +T+N ++   CK    ++A  L D M++  + P        ++  
Sbjct: 541 KLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSN------ISCN 594

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLC++GK+ NA EL + +   GL P+VVTYN  I+ LC    + +A +LF  ++ +
Sbjct: 595 LLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAE 654

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P+ + + TL+    R         LL    +   +P      I+V   +K
Sbjct: 655 GIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIK 707



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 15/229 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+V Y T+I  L K   V++A +L  +M      P+V T+N +I+G C  N  +E  
Sbjct: 239 CVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGA 298

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+ RG   + +T+ V+M+ LC+  K+DEA  LL+ +      P      N V + 
Sbjct: 299 KLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKV------PTP----NDVHFT 348

Query: 132 CLIDGLCKIGKLKNARE-LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            LI+G  K G+L  A   L   + + G  P+V T+N  IH LC    M  A D+  DM  
Sbjct: 349 ILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSA 408

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
            G  PN + +TTL+  F +KN+  +   +L  M  +    N+M Y  +L
Sbjct: 409 NGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLL 457



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N + YN ++  LCK G V KA ++  +M D+   P++ T+N+LI G C  +   +A  L+
Sbjct: 449 NIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALY 508

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M+  G+ ++ VT+N ++    +   + EA +L++ M+  G      C ++ + Y  LI
Sbjct: 509 RDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRG------CPLDEITYNGLI 562

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              CK+G  + A  L   + R  L+P+ ++ N+ I+ LC   ++  A +L  DM  +G+A
Sbjct: 563 KAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLA 622

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           P+ V + +L+    +     +   L   +    + P A
Sbjct: 623 PDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDA 660


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 6/240 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +G  C PN V YN +IDG C+ G V +   L  +M+ + + P VVTY +L+       D 
Sbjct: 286 WGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDL 345

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            +   L  EM +R L  +V  +N ++D LCK R   +A  +L  M  GG  PDA      
Sbjct: 346 EKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDA------ 399

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + +  LI GLC+ G+++ A  L +  TR  L PN+ +Y   IH  C   ++  A +L ++
Sbjct: 400 ITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVE 459

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M  +G  P+ V F  L+   +   + S+ + +   M  R ++P A+I ++++  L K ++
Sbjct: 460 MMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKM 519



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 128/264 (48%), Gaps = 45/264 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +T++T+I GLC+EG V +A+ L  +     +NPN+ +Y SLIHGFC   +   A 
Sbjct: 395 CDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVAS 454

Query: 72  YLFIEMMDRGLQSDVVTF-----------------------------------NVIMDEL 96
            L +EMM+RG   DVVTF                                   NV++  L
Sbjct: 455 NLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGL 514

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK + +  A  L++ M++  V PD +       Y  LIDG  +   L  AR++ + + + 
Sbjct: 515 CKKKMLPAARNLIEEMLEQNVHPDKY------VYTTLIDGFIRNESLDEARKIFEFMEQK 568

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G+ P+VV YN  I   C    M++A +    M   G  P+   +TTL+  + ++   S  
Sbjct: 569 GIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGA 628

Query: 217 IELLRSMDKR----NVMPYASILS 236
           + LL  M KR    NV+ Y+S+++
Sbjct: 629 LSLLCDMMKRRCQPNVVAYSSLIN 652



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 6/202 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN +I GLCK+  +  A+ L  +M ++N++P+   Y +LI GF      +EA  +
Sbjct: 502 PDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKI 561

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  +G+  DVV +N ++   C+   M+EA   +  M + G  PD F       Y  L
Sbjct: 562 FEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEF------TYTTL 615

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G  K G +  A  L   + +    PNVV Y+  I+  C     D A  LF  ME +G+
Sbjct: 616 IGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGL 675

Query: 194 APNCVIFTTLMPSFIRKNETSK 215
            PN + +T L+ S  +K++  +
Sbjct: 676 FPNVITYTILIGSLFKKDKVVR 697



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 9/239 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY T+I G  K+G +  A  L   M      PNVV Y+SLI+G+C   D + AE L
Sbjct: 607 PDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECL 666

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
           F  M  +GL  +V+T+ +++  L K  K+  A    + M+     P+ +   ++V   C 
Sbjct: 667 FGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCN 726

Query: 133 ----LIDGLCKIGKLKNAR----ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
               +I   C      + +    ++ ++L      P    YN  I +LC    + +A DL
Sbjct: 727 SMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDL 786

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
              M  KG  P+   F +L+  F    ++ +   +L +  +R+ +  AS   I+ D  V
Sbjct: 787 KNKMANKGYKPDSATFLSLLYGFCSVGKSREWRTILPNEFQRDELEVASRYKILFDQYV 845



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 10/144 (6%)

Query: 103 DEATRLLDLMI--QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           D+A +L D M+  + G    + C         ++ GLC  G ++   +L ++   AG +P
Sbjct: 241 DDARKLYDEMLAEESGADDYSTC--------VMVRGLCLEGLVEKGLKLIEARWGAGCVP 292

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           N V YN+ I   C    + +   L  +ME KG+ P  V + TLM    RK +  K+  LL
Sbjct: 293 NAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLL 352

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
             M +R + P   I + ++D L K
Sbjct: 353 SEMRERRLPPNVQIYNSVIDALCK 376



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 6/177 (3%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           ++A  L+ EM+     +D  +  V++  LC    +++  +L++       R  A C  N 
Sbjct: 241 DDARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIE------ARWGAGCVPNA 294

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LIDG C+ G +     L   +   GL+P VVTY   +  L     ++K   L  +
Sbjct: 295 VFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSE 354

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M  + + PN  I+ +++ +  +    S+ + +L+ M      P A   S ++  L +
Sbjct: 355 MRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQ 411



 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           C P    YN II  LC    + +A +L  +M ++   P+  T+ SL++GFC      E
Sbjct: 760 CDPRNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGKSRE 817


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  ++N +I GLC+ G +DKA E F  M +    P++V+YN+LI+GFC  N+ ++   L
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271

Query: 74  FIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             E M+ +G+  DV+T+  I+   CK   M  A+ L D M+  G++P+ F       +  
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDF------TFNV 325

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  K+G +++A  + + +   G +P+VVT+   I   C + ++++   L+ +M+V+ 
Sbjct: 326 LIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRN 385

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++PN   +  L+ +  ++N   +    LR +    V+P   I + ++D   K
Sbjct: 386 LSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCK 437



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 125/239 (52%), Gaps = 11/239 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +G+   P    YN +++ L K+  VD+A  LF +  +    P+V ++N LI G C   + 
Sbjct: 173 YGIKVSP--FVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL--DLMIQGGVRPDAFCEI 125
           ++A   F  M + G   D+V++N +++  C+  ++ +   LL  D++I+G V PD     
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKG-VSPD----- 284

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            ++ Y  +I G CK+G +K A EL   +  +G+ PN  T+N+ I        M  A  ++
Sbjct: 285 -VITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMY 343

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             M + G  P+ V FT+L+  + R+ E ++ ++L   M  RN+ P     +++++ L K
Sbjct: 344 EKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCK 402



 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY +II G CK G +  A ELF +M    I PN  T+N LI GF    +   A  +
Sbjct: 283 PDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVM 342

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+  G   DVVTF  ++D  C+  ++++  +L + M    + P      N+  Y  L
Sbjct: 343 YEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSP------NVYTYAVL 396

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ LCK  +++ AR   + L  + ++P    YN  I   C   ++D+A+ +  +M+ K  
Sbjct: 397 INALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKC 456

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ + FT L+     K    + I     M + N +P    ++ ++  L+K
Sbjct: 457 RPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLK 507



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY+ ++  LCK G  D AK +F  M+ + I P+      L+  +      + A+    E+
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
              G++     +N +++ L K   +DEA  L    ++    PD +      ++  LI GL
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVY------SFNILIRGL 224

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL-DMEVKGVAPN 196
           C+IG++  A E  Q++   G  P++V+YN  I+  C   ++ K HDL   DM +KGV+P+
Sbjct: 225 CRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPD 284

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            + +T+++  + +  +     EL   M    + P     ++++D
Sbjct: 285 VITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLID 328



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 9/207 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  T+N +IDG  K G +  A  ++ +M      P+VVT+ SLI G+C   + N+   
Sbjct: 317 KPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLK 376

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM  R L  +V T+ V+++ LCK  ++ EA   L  +    V P  F       Y  
Sbjct: 377 LWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPF------IYNP 430

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK GK+  A  +   +      P+ +T+ I I   C   +M +A   F  M    
Sbjct: 431 VIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEIN 490

Query: 193 VAPNCVIFTTLMPSFIRK---NETSKV 216
             P+ +   +L+   ++    NE S++
Sbjct: 491 CVPDEITINSLISCLLKAGMPNEASQI 517



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+ ++IDG C+EG V++  +L+ +MK  N++PNV TY  LI+  C  N   EA 
Sbjct: 351 CLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREAR 410

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                +    +      +N ++D  CK  K+DEA  ++  M +   RPD       + + 
Sbjct: 411 NFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDK------ITFT 464

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            LI G C  G++  A      +     +P+ +T N  I  L
Sbjct: 465 ILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCL 505



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    YN +IDG CK G VD+A  +  +M+++   P+ +T+  LI G C      EA   
Sbjct: 423 PKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAIST 482

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           F +M++     D +T N ++  L K    +EA+++    +Q
Sbjct: 483 FYKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQ 523



 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ +T+  +I G C +G + +A   F +M + N  P+ +T NSLI     A   NEA 
Sbjct: 456 CRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEAS 515

Query: 72  YL---FIEMMDRGLQS 84
            +    ++ ++ GL S
Sbjct: 516 QIKQAALQKLNLGLSS 531


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 6/239 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           + +G  C PN V YNT+IDG CK G +++A  LF ++K +   P V TY ++I+ FC   
Sbjct: 227 KRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKG 286

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
                + L +EM +RGL   +  FN I+D   K+    EA   +  MI+ G  PD     
Sbjct: 287 KFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPD----- 341

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +  Y  LI+G C  GK++ A EL +   R GL PN  +Y   IHA   + +  +A +L 
Sbjct: 342 -MATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELL 400

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++M  +G   + + +  L+   +   E    + +   M +R ++P A+I ++++  L K
Sbjct: 401 IEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCK 459



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN ++ GLCK+G    AK+L ++M D+N+ P+     +L+ GF    + +EA+ L
Sbjct: 445 PDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKL 504

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F   ++RG+ + VV  N ++   CK   M++A      M  G   PD F       Y  +
Sbjct: 505 FQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEF------TYSTI 558

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K   L+ A  +   + +    PNVVT+   I+  C +  +++A  +F +M   G 
Sbjct: 559 IDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGF 618

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN V +T L+  F ++ + +K       M     +P  +  + +V+ L  N
Sbjct: 619 EPNVVTYTILIGYFCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNN 670



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 6/198 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+     T++DG  + G +D+AK+LF    +  I+ +VV  N++I G+C     N+A   
Sbjct: 480 PDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLC 539

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M +     D  T++ I+D   K   +  A R+  LM++   +P      N+V +  L
Sbjct: 540 FKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKP------NVVTFTSL 593

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G C+ G L  A ++ + +   G  PNVVTY I I   C + ++ KA   F  M +   
Sbjct: 594 INGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQMLINKC 653

Query: 194 APNCVIFTTLMPSFIRKN 211
            PN   F  L+      N
Sbjct: 654 IPNDATFNYLVNGLTNNN 671



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +Y  +I    K G   +A EL ++M +     +++ Y +L+HG   A + + A  +
Sbjct: 375 PNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTV 434

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +MM+RG+  D   +NV+M  LCK  +   A +LL  M+   V PDAF          L
Sbjct: 435 RDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVN------ATL 488

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  + G L  A++L Q     G+  +VV  N  I   C    M+ A   F  M     
Sbjct: 489 VDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVH 548

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +P+   ++T++  ++++N+    + +   M K+   P     + +++   +N
Sbjct: 549 SPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRN 600



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 105/236 (44%), Gaps = 26/236 (11%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R F  V  P+  TY+TIIDG  K+  +  A  +F  M  +   PNVVT+ SLI+GFC   
Sbjct: 542 RMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNG 601

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D N AE +F EM   G + +VVT+ +++   CK  K+ +A    + M+     P      
Sbjct: 602 DLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQMLINKCIP------ 655

Query: 126 NIVAYGCLIDGLC-----KIGKLKNARELSQSLTRAGLM------PNVVTYNITIHALCN 174
           N   +  L++GL       I   ++  + + +L   G+M        +  YN  +  LC 
Sbjct: 656 NDATFNYLVNGLTNNNGIAISSKRSNSQPNLTLEFFGMMISDGWDWRIAAYNSILLCLCQ 715

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + +  A  L   M  KG  P+ V F  L+     +          R  D  NV+P
Sbjct: 716 HKMVKPALQLHDKMMSKGFPPDPVSFIALLHGLCLEG---------RLQDWNNVIP 762



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD-RGLQSDVVTFNVIMDEL 96
           L   MK + + P     + +I  +  +    EA  L+  ++D      DV   N +++ L
Sbjct: 118 LLETMKSKELIPTCEALSFVISAYAGSGLVKEALELYNTVIDVHNCVPDVFACNSLLNLL 177

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
             + K++ A ++ D M+      D   +++      +  GLCK GK++  R L +     
Sbjct: 178 VHHGKVEIARKVYDEMV------DRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGK 231

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G +PN+V YN  I   C +  +++A+ LF +++VKG  P    +  ++ +F +K +   V
Sbjct: 232 GCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAV 291

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +LL  M +R +     I + I+D   K+
Sbjct: 292 DKLLVEMKERGLAVSLQIFNGIIDARFKH 320


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 6/244 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+ID LC  G + KA +L  +M+      + VTYN++I G C      EAE
Sbjct: 426 CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAE 485

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M  +G+  + +TFN ++D LCK++++D+A +L+  MI  G++P      N + Y 
Sbjct: 486 EVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQP------NNITYN 539

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++   CK G +K A ++ Q++T  G   +VVTY   I+ LC   +   A  L   M +K
Sbjct: 540 SILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIK 599

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+      +  ++ S  R+N T   + L R M +    P A    I+   L +   S+  
Sbjct: 600 GMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIRE 659

Query: 252 IPQF 255
              F
Sbjct: 660 AFDF 663



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VT N +I+G CK G V+ A     Q       P+ +TYN+ ++G C       A 
Sbjct: 251 CSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHAL 310

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G   DV T+N++++ LCKN +++EA  +L+ M++ G  PD      I  + 
Sbjct: 311 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPD------ITTFN 364

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC   +L+ A +L++ +T  GL P+V T+NI I+ALC       A  LF +M+  
Sbjct: 365 TLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSS 424

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V + TL+ +     +  K ++LL+ M+           + I+D L K
Sbjct: 425 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCK 477



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 123/234 (52%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYNT ++GLC+ G V  A ++   M  E  +P+V TYN +++  C      EA+ 
Sbjct: 287 EPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 346

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M++RG   D+ TFN ++  LC   +++EA  L   +   G+ PD +       +  
Sbjct: 347 ILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVY------TFNI 400

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+ LCK+G  + A  L + +  +G  P+ VTYN  I  LC+  ++ KA DL  +ME  G
Sbjct: 401 LINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG 460

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              + V + T++    +K    +  E+   MD + +   A   + ++D L K++
Sbjct: 461 CPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 514



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 7/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +TVTYNTIIDGLCK+  +++A+E+F QM  + I+ N +T+N+LI G C     ++A 
Sbjct: 461 CPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDAN 520

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  GLQ + +T+N I+   CK   + +A  +L  M   G       E+++V YG
Sbjct: 521 QLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGF------EVDVVTYG 574

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK G+ + A +L + +   G+      YN  I +L        A +LF +M   
Sbjct: 575 TLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEV 634

Query: 192 GVAPNCVIFTTLMPSFIRKNET-SKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G  P+   +  +     R   +  +  + L  M  +  +P  S   ++ + L+
Sbjct: 635 GEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLL 687



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+ T++ G  +EG +  A  +  +M +   +P  VT N LI+G+C      +A   
Sbjct: 218 PDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGY 277

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             + +  G + D +T+N  ++ LC+N  +  A +++D+M+Q G  PD F       Y  +
Sbjct: 278 IQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVF------TYNIV 331

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++ LCK G+L+ A+ +   +   G +P++ T+N  I ALC+  ++++A DL   + +KG+
Sbjct: 332 VNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGL 391

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +P+   F  L+ +  +  +    + L   M      P     + ++D
Sbjct: 392 SPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLID 438



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT+NT++  LC+   V  A  +  +M    + P+  T+ +L+ GF        A  
Sbjct: 182 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALR 241

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M++ G     VT NV+++  CK  ++++A   +   I  G  PD       + Y  
Sbjct: 242 VKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQ------ITYNT 295

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            ++GLC+ G + +A ++   + + G  P+V TYNI ++ LC + Q+++A  +   M  +G
Sbjct: 296 FVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERG 355

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+   F TL+ +    N   + ++L R +  + + P     +I+++ L K
Sbjct: 356 CLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCK 407



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 4/168 (2%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G Q  V   +  ++   + +   +A   +DL++   + P    + + V Y  
Sbjct: 100 LVTEMRREGHQVRVGVVHSFLESYARQQLFVDA---VDLVLNQ-LDPLFGIQADTVVYNH 155

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++ L +  K+K    +   +   G+ P+VVT+N  + ALC   Q+  A  +  +M   G
Sbjct: 156 LLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSG 215

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           VAP+   FTTLM  F+ +      + +   M +    P    ++++++
Sbjct: 216 VAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLIN 263



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G R  G+   P    YN +I  L +      A  LF +M +    P+  TY  +  G C 
Sbjct: 595 GMRIKGMRATPKA--YNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCR 652

Query: 64  ANDG-NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
                 EA    +EM+D+G   +  +F ++ + L      D   R ++++I+
Sbjct: 653 GGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIIE 704


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  R  GV  +P+  TY+ +I+GLCKE  +D+A  LF +M D  + PN VT+ +LI G
Sbjct: 193 LKNAMRASGV--QPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDG 250

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     + A  ++ +M+++G   DVVT+N ++  LCK   + +A  LLD M + G++PD
Sbjct: 251 HCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPD 310

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  + Y  LIDG CK G L+ A EL + + +  +  + V Y   I  LC + +   
Sbjct: 311 K------ITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVD 364

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  +  +M   G+ P+   +T +M  F +K +  K  ELLR M +   +P
Sbjct: 365 AEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 7/186 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G +D A +++ QM ++  +P+VVTYN+LI+G C   D  +A YL
Sbjct: 239 PNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A  L + MI+  +R D       V Y  L
Sbjct: 299 LDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDD------VVYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + + R GL P+  TY + ++  C    + KA +L  +M+  G 
Sbjct: 353 IFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGR 412

Query: 194 APNCVI 199
            P CV+
Sbjct: 413 VP-CVV 417



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +D+   L   M+   + P+V TY+ LI+G C  +  +EA  
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANG 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D GL  + VTF  ++D  CKN ++D A  +   M+  G  PD      +V Y  
Sbjct: 228 LFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPD------VVTYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK AR L   ++R GL P+ +TY   I   C +  ++ A +L   M  + 
Sbjct: 282 LIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKES 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V++T L+    ++       ++LR M +  + P     ++I++   K 
Sbjct: 342 IRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKK 394



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 114/210 (54%), Gaps = 6/210 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMR 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  +MDEA  L   M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G+L  A ++ + +   G  P+VVTYN  I+ LC    + +A  L  +M  KG+ P+ +
Sbjct: 253 KNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +TTL+    ++ +     EL   M K ++
Sbjct: 313 TYTTLIDGSCKEGDLETAFELRERMIKESI 342



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 6/187 (3%)

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           +N L+H FC   +   A+ +F  +   GL+  VV+FN +M+   K   +DE  RL + M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMR 198

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             GV+PD +       Y  LI+GLCK  ++  A  L   +   GL+PN VT+   I   C
Sbjct: 199 ASGVQPDVY------TYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHC 252

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            + ++D A D++  M  +G +P+ V + TL+    +K +  +   LL  M ++ + P   
Sbjct: 253 KNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKI 312

Query: 234 ILSIIVD 240
             + ++D
Sbjct: 313 TYTTLID 319



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 35/140 (25%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV---------------------- 163
           ++  +  L+   CK G+++ A+ +  ++T+ GL P+VV                      
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 164 -------------TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                        TY++ I+ LC + +MD+A+ LF +M   G+ PN V FTTL+    + 
Sbjct: 195 NAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKN 254

Query: 211 NETSKVIELLRSMDKRNVMP 230
                 +++ R M  +   P
Sbjct: 255 GRLDLAMDIYRQMLNQGFSP 274



 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 29/230 (12%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           +Y T+I  LC         ++FL+ K            SLI         + A  +F  +
Sbjct: 15  SYCTMIHFLC-------THQMFLEAK------------SLIQTVVSRKGKDSASAVFAAI 55

Query: 78  MD-RGLQ-SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR-PDAFCEINIVAYGCLI 134
           ++ +G Q SD+  F+ ++    ++  + +A     L  +   R P   C  N++ +    
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCR-NVLEH---- 110

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             L K    K      + +   G   ++  +NI +H  C + +M  A  +F  +   G+ 
Sbjct: 111 --LMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLR 168

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+ V F TLM  +I+  +  +   L  +M    V P     S++++ L K
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCK 218



 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P+  TY  +++ FC   D  +A  L  E
Sbjct: 347 VVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLRE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRNGRVPCVVT 418


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 8/244 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ GV  KP+ VTY T+I  LC+ G +D A E F QM D+ + P+   Y+ LI GFC
Sbjct: 420 NEMRDHGV--KPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFC 477

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 +A+ L  E+M+ G++ D+V F  I++ LCK  ++ +A  + DL +  G+ PDA 
Sbjct: 478 THGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA- 536

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                V Y  L+DG C +GK++ A  +  ++  AG+ PNVV Y   ++  C   ++D+  
Sbjct: 537 -----VVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF +M  KG+ P+ +++  ++        T         M +  +       SI++  L
Sbjct: 592 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 651

Query: 243 VKNE 246
            KN 
Sbjct: 652 FKNR 655



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 126/251 (50%), Gaps = 6/251 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G VC P+ V YNT+IDG  KEG V+KA +LF +M    I P++VTY+S++H  C A  
Sbjct: 212 EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARA 271

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++AE    +M+++G+  D  T+N ++       +  EA R+   M +  + PD      
Sbjct: 272 MDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPD------ 325

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +VA   L+  LCK GK+K AR++  ++   G  P+V +Y I ++       +    DLF 
Sbjct: 326 VVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFD 385

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M   G+AP    F  L+ ++       K + +   M    V P+      ++  L +  
Sbjct: 386 LMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIG 445

Query: 247 ISLNSIPQFNR 257
              +++ +FN+
Sbjct: 446 KMDDAMEKFNQ 456



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y T+++G CK G +D+   LF +M  + I P+ + YN +I G   A     A+ 
Sbjct: 568 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKV 627

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM + G+  +  T+++++  L KNR  DEA  L   +    V+      I+I+    
Sbjct: 628 KFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVK------IDIITLNT 681

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G+ +  +++ A++L  S++R+GL+P  VTY+I I  L  +  +++A D+F  M+  G
Sbjct: 682 MIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 741

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             P+  +   ++   ++KNE  +    L  +D+RN         ++VDL 
Sbjct: 742 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLF 791



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 141/307 (45%), Gaps = 64/307 (20%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC----------- 62
           P+ V  NT++  LCK G + +A+++F  M  +  NP+V +Y  +++G+            
Sbjct: 324 PDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDL 383

Query: 63  ----------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                                 YAN G  ++A  +F EM D G++  VVT+  ++  LC+
Sbjct: 384 FDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443

Query: 99  NRKMDEATRLLDLMIQGGVRPD---------AFC--------------------EINIVA 129
             KMD+A    + MI  GV PD          FC                     ++IV 
Sbjct: 444 IGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVF 503

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +G +I+ LCK+G++ +A+ +       GL P+ V YN+ +   C   +M+KA  +F  M 
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 563

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             G+ PN V + TL+  + +     + + L R M ++ + P   + +II+D L +   ++
Sbjct: 564 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTV 623

Query: 250 NSIPQFN 256
            +  +F+
Sbjct: 624 PAKVKFH 630



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 2   ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           A G R    V  P + TY  ++D   +    + A   F Q+    +  + +  + L+ GF
Sbjct: 103 AQGPR----VLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGF 158

Query: 62  CYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           C A   +EA + L     + G   DV ++N+++  LC   K  +A  LL +M +GG    
Sbjct: 159 CEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGT--- 215

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
             C  ++VAY  +IDG  K G +  A +L + + + G+ P++VTY+  +HALC    MDK
Sbjct: 216 -VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDK 274

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A      M  KGV P+   +  L+  +    +  + + + + M +++++P    L+ ++ 
Sbjct: 275 AEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMG 334

Query: 241 LLVK 244
            L K
Sbjct: 335 SLCK 338



 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 44/96 (45%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTY+ +I  L KEG V++A+++F  M++    P+    N ++      N+   A   
Sbjct: 709 PCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAY 768

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
             ++ +R    + +T  +++D         E  R L
Sbjct: 769 LSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 804


>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 766

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 124/229 (54%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNTVTYN +IDG C+ G ++ AKE+  +MK++ I P+VVT N+++ G C  +  N A 
Sbjct: 402 CVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAV 461

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F++M   G++ +VVT+  ++   C    +++A    D M++ G  PDA        Y 
Sbjct: 462 LFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDA------KIYY 515

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLC++ +  +A  + + L   G   +++ YN+ I   C+    +K +++  DME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P+ + + TL+  F +  +   V  ++  M +  + P  +    +++
Sbjct: 576 GMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIE 624



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 13/242 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDG 67
           G V K +++ +NT+IDGLCK G + +A+EL ++MK +E   PN VTYN LI G+C A   
Sbjct: 363 GNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKL 422

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A+ +   M + G++ DVVT N I+  +C++  ++ A      M + GV+       N+
Sbjct: 423 ETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKG------NV 476

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI   C +  ++ A      +  AG  P+   Y   I  LC   Q+ + HD    
Sbjct: 477 VTYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYYALISGLC---QVRRDHDAIRV 533

Query: 188 MEV---KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +E     G + + + +  L+  F  KN   KV E+L  M+K  + P +   + ++    K
Sbjct: 534 VEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGK 593

Query: 245 NE 246
           ++
Sbjct: 594 HK 595



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 16/219 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-----KDEN-INPNVVTYNSLIHGFCYAND 66
           +P+ VT   +I+ LCK   VD+A ++F QM      D N I  + + +N+LI G C    
Sbjct: 326 RPDVVTLGILINTLCKSRRVDEALQVFEQMCGKRTDDGNVIKADSIHFNTLIDGLCKVGR 385

Query: 67  GNEAEYLFIEM-MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             EAE L + M M+     + VT+N ++D  C+  K++ A  ++  M + G++PD     
Sbjct: 386 LKEAEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPD----- 440

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V    ++ G+C+   L  A      + + G+  NVVTY   IHA C+   ++KA   F
Sbjct: 441 -VVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWF 499

Query: 186 LDMEVKGVAPNCVIFTTLMPSFI---RKNETSKVIELLR 221
             M   G +P+  I+  L+       R ++  +V+E LR
Sbjct: 500 DKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLR 538



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 36/265 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+V     I  LCK    + A ++   +           +N+L+       +      L
Sbjct: 257 PNSVWLTRFISSLCKNARTNAAWDILSDLMKNKAPLEAPPFNALLSCLGRNMNIGRMNAL 316

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM---------------IQGGVR 118
            ++M +  ++ DVVT  ++++ LCK+R++DEA ++ + M               I     
Sbjct: 317 VLKMDEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQMCGKRTDDGNVIKADSIHFNTL 376

Query: 119 PDAFCEI---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
            D  C++                     N V Y CLIDG C+ GKL+ A+E+   +   G
Sbjct: 377 IDGLCKVGRLKEAEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDG 436

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + P+VVT N  +  +C    ++ A   F+DME +GV  N V + TL+ +    +   K +
Sbjct: 437 IKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAM 496

Query: 218 ELLRSMDKRNVMPYASILSIIVDLL 242
                M +    P A I   ++  L
Sbjct: 497 HWFDKMLEAGCSPDAKIYYALISGL 521



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y  +I GLC+      A  +  ++++   + +++ YN LI  FC  N+  +  
Sbjct: 507 CSPDAKIYYALISGLCQVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVY 566

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M   G++ D +T+N ++    K++  +   R+++ M +  + P       +  YG
Sbjct: 567 EMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDP------TVATYG 620

Query: 132 CLIDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            +I+  C +G+L  A +L + +  R+ + PN V YNI I+A        +A  L  +M++
Sbjct: 621 AVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           K V PN   +  L      KN+   +++L+  M +++  P    + I+++ L
Sbjct: 681 KMVRPNVETYNALFKCLKEKNQAETLLKLMDEMVEQSCEPNQITMEILMERL 732



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 7/206 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + YN +I   C +   +K  E+   M+ E + P+ +TYN+LI  F    D    E +  +
Sbjct: 547 LAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQ 606

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLID 135
           M +  L   V T+  +++  C   ++ EA +L  D+ ++  V P      N V Y  LI+
Sbjct: 607 MREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNP------NTVIYNILIN 660

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
              K+G    A  L + +    + PNV TYN     L    Q +    L  +M  +   P
Sbjct: 661 AFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQAETLLKLMDEMVEQSCEP 720

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLR 221
           N +    LM      +E  K+ + ++
Sbjct: 721 NQITMEILMERLSGSDELVKLRKFMQ 746



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 8/215 (3%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           DK   L+   K++NI   VV    LI  F      N++  L  E +D  +++  V  NV+
Sbjct: 134 DKLLRLYEIAKEKNIPLTVVATKLLIRWFGRMGMANQS-VLVYERLDSNMKNSQVR-NVV 191

Query: 93  MDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +D L +N  +D+A ++LD M+Q   V P      +IV +      L    K+     L  
Sbjct: 192 IDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKGRLLTEEKIIG---LIS 248

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP-NCVIFTTLMPSFIRK 210
             +  G+ PN V     I +LC + + + A D+  D+ +K  AP     F  L+    R 
Sbjct: 249 RFSSHGVSPNSVWLTRFISSLCKNARTNAAWDILSDL-MKNKAPLEAPPFNALLSCLGRN 307

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               ++  L+  MD+  + P    L I+++ L K+
Sbjct: 308 MNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKS 342


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN ++DG+C EG VD A EL   +      P+ V YN+++ G C A    +A+
Sbjct: 73  CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDAD 132

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      +  TFNV++  LC+   + +A +LL+ M + G      C  NIV Y 
Sbjct: 133 ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG------CTANIVTYN 186

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+GLC+   +  A  L   +   G  P++VTYN  +  LC+  +   A +L  +M   
Sbjct: 187 AIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQN 246

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V F TL+    +K      IE+ + M  +   P +   S I+  L K
Sbjct: 247 GCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAK 299



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 10/194 (5%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           + PN  TYN LIH  C      +A  +  +M+ RG   DVVT+N++++  CK R   +A 
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
            L+DLM   G  P      N V Y  L+DG+C  G + +A EL ++L   G  P+ V YN
Sbjct: 63  ELIDLMRAEGCTP------NNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYN 116

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             +  LC+ E+   A +L  +M  +   PN   F  ++ S  RK    + I+LL  M K 
Sbjct: 117 TVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKH 176

Query: 227 ----NVMPYASILS 236
               N++ Y +I++
Sbjct: 177 GCTANIVTYNAIIN 190



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 115/274 (41%), Gaps = 29/274 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TYN +I  LC+ G V  A  +   M      P+VVTYN L+   C      +A  
Sbjct: 4   QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 63

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L   M   G   + VT+NV+MD +C    +D+A  LL  +   G +P             
Sbjct: 64  LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLC 123

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              C  N   +  +I  LC+ G L+ A +L + +++ G   N+V
Sbjct: 124 SAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIV 183

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  I+ LC    +D A  L   M+  G  P+ V + TL+             EL+ +M
Sbjct: 184 TYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNM 243

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            +   +P     + ++  L +  + +++I  F +
Sbjct: 244 TQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQ 277



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ VTYNT++ GLC       A+EL   M      P+ VT+N+LI   C      +A 
Sbjct: 213 CKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAI 272

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M D+G   + +T++ I+  L K  K+D+A  L + M   G  PD         Y 
Sbjct: 273 EVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-------YQ 325

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L + L     ++ A +  + L  +G+ P+ V YN  +  LC + + + A D+   M   
Sbjct: 326 LLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSS 385

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  P+ + +  L+     +   ++  ELL  +  R+V+
Sbjct: 386 GCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVL 423


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 8/244 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ GV  KP+ VTY T+I  LC+ G +D A E F QM D+ + P+   Y+ LI GFC
Sbjct: 420 NEMRDHGV--KPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFC 477

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 +A+ L  E+M+ G++ D+V F  I++ LCK  ++ +A  + DL +  G+ PDA 
Sbjct: 478 THGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA- 536

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                V Y  L+DG C +GK++ A  +  ++  AG+ PNVV Y   ++  C   ++D+  
Sbjct: 537 -----VVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF +M  KG+ P+ +++  ++        T         M +  +       SI++  L
Sbjct: 592 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 651

Query: 243 VKNE 246
            KN 
Sbjct: 652 FKNR 655



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 6/251 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G VC P+ V YNT+IDG  KEG V+KA +LF +M    I P++VTY+S++H  C A  
Sbjct: 212 EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARA 271

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++AE    +M+++G+  D  T+N ++       +  EA R+   M +  + PD      
Sbjct: 272 MDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPD------ 325

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +VA   L+  LCK GK+K AR++  ++   G  P+V +Y I ++       +    DLF 
Sbjct: 326 VVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFD 385

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M   G+AP+   F  L+ ++       K + +   M    V P+      ++  L +  
Sbjct: 386 LMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIG 445

Query: 247 ISLNSIPQFNR 257
              +++ +FN+
Sbjct: 446 KMDDAMEKFNQ 456



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y T+++G CK G +D+   LF +M  + I P+ + YN +I G   A     A+ 
Sbjct: 568 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKV 627

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM + G+  +  T+++++  L KNR  DEA  L   +    V+      I+I+    
Sbjct: 628 KFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVK------IDIITLNT 681

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G+ +  +++ A++L  S++R+GL+P  VTY+I I  L  +  +++A D+F  M+  G
Sbjct: 682 MIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAG 741

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             P+  +   ++   ++KNE  +    L  +D+RN         ++VDL 
Sbjct: 742 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLF 791



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 135/274 (49%), Gaps = 33/274 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAE 71
           P+  +Y  +++G   +G +    +LF  M  + I P++ T+N LI    YAN G  ++A 
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA--YANCGMLDKAM 416

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            +F EM D G++  VVT+  ++  LC+  KMD+A    + MI  GV PD          F
Sbjct: 417 IIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF 476

Query: 123 C--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C                     ++IV +G +I+ LCK+G++ +A+ +       GL P+ 
Sbjct: 477 CTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V YN+ +   C   +M+KA  +F  M   G+ PN V + TL+  + +     + + L R 
Sbjct: 537 VVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFRE 596

Query: 223 MDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           M ++ + P   + +II+D L +   ++ +  +F+
Sbjct: 597 MLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFH 630



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 2   ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           A G R    V  P + TY  ++D   +    + A   F Q+    +  + +  + L+ GF
Sbjct: 103 AQGPR----VLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGF 158

Query: 62  CYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           C A   +EA + L     + G   DV ++N+++  LC   K  +A  LL +M +GG    
Sbjct: 159 CEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGT--- 215

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
             C  ++VAY  +IDG  K G +  A +L + + + G+ P++VTY+  +HALC    MDK
Sbjct: 216 -VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDK 274

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A      M  KGV P+   +  L+  +    +  + + + + M +++++P    L+ ++ 
Sbjct: 275 AEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMG 334

Query: 241 LLVK 244
            L K
Sbjct: 335 SLCK 338



 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 44/96 (45%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTY+ +I  L KEG V++A+++F  M++    P+    N ++      N+   A   
Sbjct: 709 PCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAY 768

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
             ++ +R    + +T  +++D         E  R L
Sbjct: 769 LSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 804


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  VTYN+++ GLCK    DKAKE+F  M   ++ P+V ++N LI GFC   +  EA  
Sbjct: 224 KPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVK 283

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + EM  R +  DVV+F+ ++    +  +MD A   L  M   G+ PD       V Y  
Sbjct: 284 FYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDG------VIYTM 337

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C+ G +  A  +   +   G +P+VVTYN  ++ LC   ++  A  L  +ME +G
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERG 397

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V P+   FTTL+  + R+      ++L  ++ ++ + P     + ++D
Sbjct: 398 VTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLID 445



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ VTYNT+++GLCK+  +  A++L  +M++  + P++ T+ +LIHG+C   +  
Sbjct: 360 GFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFE 419

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  LF  ++ + L+ DVVT+N ++D +C+   + +A  L D M    + P      N +
Sbjct: 420 NALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILP------NHI 473

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LID  C+ G++++A      + + G +PN+ TYN  I   C    + K       M
Sbjct: 474 TYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKM 533

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
               V P+ + F TL+  +I++        +   M+K  V P A   ++I++
Sbjct: 534 RQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIIN 585



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 128/252 (50%), Gaps = 14/252 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN----PNVVTYNSLIHGFCYA 64
           G+   P+ V Y  +I G C+ G + +A    L+++DE +     P+VVTYN+L++G C  
Sbjct: 325 GLGLVPDGVIYTMVIGGFCRAGSMSEA----LRVRDEMVGFGCLPDVVTYNTLLNGLCKQ 380

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +   +AE L  EM +RG+  D+ TF  ++   C+    + A +L D +++  +RPD    
Sbjct: 381 HRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPD---- 436

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             +V Y  LIDG+C+ G L  A EL   +    ++PN +TY+I I + C   Q++ A   
Sbjct: 437 --VVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGF 494

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +M  KG  PN   + +++  + R     K  + L+ M + NV P     + ++   +K
Sbjct: 495 LDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIK 554

Query: 245 NEISLNSIPQFN 256
            E    +   FN
Sbjct: 555 EENMHGAFNVFN 566



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 6/237 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T N ++   CK    D A  +  +M+   + P+VVT+N LI     A D + A  L 
Sbjct: 156 NAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M +RGL+  +VT+N ++  LCK+R+ D+A  +   M Q  V PD      + ++  LI
Sbjct: 216 DSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPD------VRSFNILI 269

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C++G++K A +  + +    + P+VV+++  I       +MD A     +M+  G+ 
Sbjct: 270 GGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLV 329

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           P+ VI+T ++  F R    S+ + +   M     +P     + +++ L K    L++
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDA 386



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++  L + G+   A+E +  +   +   N  T N ++H +C   + + A+ +  EM  
Sbjct: 126 NALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEK 185

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           R +  DVVT NV++D   +   +D A  L+D M   G++P       IV Y  ++ GLCK
Sbjct: 186 RCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKP------GIVTYNSVLKGLCK 239

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
             +   A+E+ +++ +  + P+V ++NI I   C   ++ +A   + +M+ + V P+ V 
Sbjct: 240 HRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVS 299

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           F+ L+  F R+ E       LR M    ++P   I ++++
Sbjct: 300 FSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVI 339



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 6/183 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY+ +ID  C++G V+ A     +M  +   PN+ TYNS+I G+C + +  + +  
Sbjct: 470 PNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQF 529

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M    +  D++TFN ++    K   M  A  + ++M +  VRPDA      V Y  +
Sbjct: 530 LQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDA------VTYNMI 583

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G  + G +++A  + + +  +G+ P+  TY   I+         +A  L  +M  +G 
Sbjct: 584 INGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGF 643

Query: 194 APN 196
           AP+
Sbjct: 644 APD 646



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    ++ +I    +     +A E F  + D  +       N+L+     A   + A+  
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEA 144

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  ++    + +  T N+++   CK  + D A  ++  M +  V PD      +V +  L
Sbjct: 145 YRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPD------VVTHNVL 198

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID   + G +  A  L  S+   GL P +VTYN  +  LC   + DKA ++F  M+   V
Sbjct: 199 IDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSV 258

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           AP+   F  L+  F R  E  + ++  + M  R V P     S ++ L  +
Sbjct: 259 APDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSR 309



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 41/73 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN II+G  ++G +  A  +F  M D  I P+  TY SLI+G   A +  +A  
Sbjct: 574 RPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQ 633

Query: 73  LFIEMMDRGLQSD 85
           L  EM+ RG   D
Sbjct: 634 LHDEMIHRGFAPD 646


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 132/249 (53%), Gaps = 14/249 (5%)

Query: 4   GNREF------GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL 57
           GN  F      G++C  N  +YN +ID  CK   +DKA   F +M+ + I PN+VT+N+L
Sbjct: 446 GNHYFNQMVKDGLLC--NVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTL 503

Query: 58  IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           I G+C   +  ++  L + +++ G + D+ TF+ I+D LC+ +++++A      M+  G+
Sbjct: 504 IDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGL 563

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
            P+A      V Y  LI  LC IG +  + +L + +   G+ P+V ++N  I + C   +
Sbjct: 564 SPNA------VTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGK 617

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           ++ A  LF  M   G+ P+   +   +  F +    ++  EL  SM+    MP +   +I
Sbjct: 618 VEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNI 677

Query: 238 IVDLLVKNE 246
           I+D LVK +
Sbjct: 678 ILDALVKQD 686



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 119/216 (55%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+NT+IDG CK G + K+++L + + +    P++ T++S+I G C A    +A   
Sbjct: 495 PNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGC 554

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+  GL  + VT+N+++  LC    +  + +LL  M   G+ PD F      ++  L
Sbjct: 555 FSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVF------SFNAL 608

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I   C++GK+++A++L  S+   GL+P+  TY   I   C   + ++A +LFL ME  G 
Sbjct: 609 IQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGC 668

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            P+      ++ + +++++     ++ ++  +  ++
Sbjct: 669 MPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGIL 704



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 6/172 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T+++IIDGLC+   ++ A   F +M    ++PN VTYN LIH  C   D   +  
Sbjct: 529 KPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMK 588

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M   G+  DV +FN ++   C+  K+++A +L   M+  G+ PD +       Y  
Sbjct: 589 LLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNY------TYVA 642

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            I   C+ G+   A+EL  S+   G MP+  T NI + AL   +Q + A  +
Sbjct: 643 FIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKI 694



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 118/303 (38%), Gaps = 76/303 (25%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN---------------- 55
           CKP+  TYN +I G+C+ G VD+A  L  QM+    +PNV TY                 
Sbjct: 248 CKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAF 307

Query: 56  -------------------SLIHGFCYANDGNEAEYLFIEMMDR---------------- 80
                              S IHG       N+A  L IE ++R                
Sbjct: 308 RVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCL 367

Query: 81  -------------------GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
                              G + D  TFN+ M+ L K   ++E   +LD  ++ G++   
Sbjct: 368 SSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMK--- 424

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                   Y  LI  L   GK+         + + GL+ NV +YN+ I   C    MDKA
Sbjct: 425 ---FGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKA 481

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
            + F +M+ KG+ PN V F TL+  + +  E  K  +LL  + +    P     S I+D 
Sbjct: 482 TNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDG 541

Query: 242 LVK 244
           L +
Sbjct: 542 LCR 544



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 6   REFGVVC-KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           ++FG +  KP++ T+N  ++ L K   +++   +  +  ++ +     TY +LI     A
Sbjct: 381 KKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMA 440

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               E  + F +M+  GL  +V ++N+++D  CK   MD+AT     M   G+ P     
Sbjct: 441 GKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPP----- 495

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V +  LIDG CK G++  +R+L   L   G  P++ T++  I  LC  +Q++ A   
Sbjct: 496 -NLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGC 554

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           F +M + G++PN V +  L+ S     +  + ++LLR M    + P
Sbjct: 555 FSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINP 600



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 7/236 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T  YN +ID L K   +D A   F QM  +N  P+  TYN LIHG C +   +EA  L
Sbjct: 215 PSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRL 274

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G   +V T+ +++D     +K+DEA R+L+ M    V P    E  I ++   
Sbjct: 275 VKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPS---EATIRSF--- 328

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G+ +      A EL+        +   +  +  +  L +     +A  L       G 
Sbjct: 329 IHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGH 388

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELL-RSMDKRNVMPYASILSIIVDLLVKNEIS 248
            P+   F   M   I+  + ++V  +L R +++     +++ L++I  L +  +++
Sbjct: 389 KPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVT 444



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           +I    + G      E+F Q+    I+P+   YN++I     +N  + A   F +M    
Sbjct: 188 LIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADN 247

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
            + D  T+N+++  +C++  +DEA RL+  M   G  P      N+  Y  LIDG     
Sbjct: 248 CKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSP------NVFTYTILIDGFFNAK 301

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           K+  A  + +++    + P+  T    IH +      +KA +L ++   +      +   
Sbjct: 302 KVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACD 361

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           TL+     KN   +   LL+   K    P ++  +I ++ L+K
Sbjct: 362 TLLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIK 404


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 122/214 (57%), Gaps = 6/214 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V  NT++ GL ++G + +A +L  +M +   +P++ TYN +I+G C     ++A+ 
Sbjct: 387 KPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADN 446

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L I+ + +G   DV TFN ++D  CK  K+D A  ++D M   GV PD      ++ Y  
Sbjct: 447 LVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPD------VITYNS 500

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++GLCK GK ++     + +   G +PN++TYNI   + C   ++++A +L  +M+ KG
Sbjct: 501 ILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKG 560

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           + P+ V F TLM  F    +     +L + +D++
Sbjct: 561 LTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQ 594



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + +N +I  LC++G V +++ L  ++    ++PN+ T N  I GFC     NEA  L
Sbjct: 214 PDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRL 273

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            ++ + RGL  DV+T+N ++  LCKN K+ EA   L  M+  G  PD F       Y  +
Sbjct: 274 -LDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGF------TYNSI 326

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK+G ++NA ++ +     G +P+  TY   I+ LC D  +D+A ++F +   KG+
Sbjct: 327 IDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGL 386

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V+  TL+    ++    + ++L+  M +    P     +++++ L K
Sbjct: 387 KPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCK 437



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 7/230 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+NT+IDG CK+  +D A E+  +M +  ++P+V+TYNS+++G C A    +    
Sbjct: 458 PDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGT 517

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  MM++G   +++T+N++ +  CK RK++EA  L++ M   G+ PD      +V +G L
Sbjct: 518 FKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPD------VVNFGTL 571

Query: 134 IDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           + G C  G L  A +L + +  +      + TYNI I+A      M+ A  LF  M   G
Sbjct: 572 MKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENG 631

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            +P+   +  ++  F +    +     L    ++ ++P  +    +++ L
Sbjct: 632 FSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCL 681



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 29/247 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN+IIDG CK G +  A ++      +   P+  TY SLI+G C   D + A  
Sbjct: 317 EPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAIN 376

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------C 123
           +F E M++GL+ ++V  N ++  L +   + +A +L++ M + G  PD +         C
Sbjct: 377 VFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLC 436

Query: 124 EINIVA--------------------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           +I  V+                    +  LIDG CK  KL NA E+   +   G+ P+V+
Sbjct: 437 KIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVI 496

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  ++ LC   + +     F  M  KG  PN + +  L  SF +  +  + + L+  M
Sbjct: 497 TYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEM 556

Query: 224 DKRNVMP 230
             + + P
Sbjct: 557 QNKGLTP 563



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNT+I GLCK   V +A+    +M +E   P+  TYNS+I G+C       A+ +
Sbjct: 283 PDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQI 342

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +   +G   D  T+  +++ LC++  +D A  + +  ++ G++P      N+V    L
Sbjct: 343 LRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKP------NLVLCNTL 396

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GL + G +  A +L   ++  G  P++ TYN+ I+ LC    +  A +L +D   KG 
Sbjct: 397 VKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGH 456

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
            P+   F TL+  + +K +    IE++  M    V P    Y SIL+
Sbjct: 457 LPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILN 503



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 114/235 (48%), Gaps = 9/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYN +I+GLCK G V  A  L +    +   P+V T+N+LI G+C     + A 
Sbjct: 421 CSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAI 480

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M + G+  DV+T+N I++ LCK  K ++      LM++ G  P      NI+ Y 
Sbjct: 481 EIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVP------NIITYN 534

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF--LDME 189
            L +  CK  K++ A  L + +   GL P+VV +   +   C++  +D A+ LF  +D +
Sbjct: 535 ILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQ 594

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            K  +     +  ++ +F  K   +   +L   M +    P +    +++D   K
Sbjct: 595 YK-FSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCK 648



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 7/229 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  +YN I++ L +  + D+A +++++M+D+ I P+V T+   +  FC  +  + A 
Sbjct: 107 CEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAAR 166

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M  +G +S  V +  ++    +     EA  L + M+  G+ PD      I+A+ 
Sbjct: 167 RLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPD------IMAFN 220

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ G ++ +  L   + + G+ PN+ T NI I   C    +++A  L LD   +
Sbjct: 221 KLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRL-LDGVGR 279

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P+ + + TL+    +  +  +    LR M      P     + I+D
Sbjct: 280 GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIID 328



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 42/221 (19%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN+I++GLCK G  +     F  M ++   PN++TYN L   FC A    EA  L
Sbjct: 493 PDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNL 552

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKN----------RKMDE------------------- 104
             EM ++GL  DVV F  +M   C N          +++DE                   
Sbjct: 553 IEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFA 612

Query: 105 -------ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
                  A +L + M + G  PD++       Y  +IDG CK G + +           G
Sbjct: 613 GKLNMNMAEKLFNKMCENGFSPDSY------TYRVMIDGFCKTGNINSGYSFLLVKIEKG 666

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           L+P++ T+   ++ LC   ++ +A  +   M  KG+ P  V
Sbjct: 667 LIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVV 707



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 106/218 (48%), Gaps = 7/218 (3%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           ++G + +A ++F +M   N  P+V +YN++++        ++A  +++ M D+G+  DV 
Sbjct: 88  RKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVY 147

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           TF + M   C+  +   A RLL+ M      P   CE + VAY  +I G  +      A 
Sbjct: 148 TFTIRMKSFCRTSRPHAARRLLNNM------PSQGCESSAVAYCTVIGGFYEENHRVEAH 201

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           EL + +   G+ P+++ +N  IH LC    + ++  L   +  +GV+PN       +  F
Sbjct: 202 ELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGF 261

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            ++   ++ I LL  +  R + P     + ++  L KN
Sbjct: 262 CQRAMLNEAIRLLDGVG-RGLTPDVITYNTLICGLCKN 298



 Score = 41.6 bits (96), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 15/126 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ TY  +IDG CK G ++      L   ++ + P++ T+  +++  C     +EA  +
Sbjct: 634 PDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGI 693

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL--DLMIQGGVRPDAFCEINIVAYG 131
              M+ +G+  +VV  N I +    ++K   A +++  +LM +G         I   AY 
Sbjct: 694 IHLMVHKGIVPEVV--NTIFE---ADKKEVAAPKIVVENLMKKG--------HITYFAYE 740

Query: 132 CLIDGL 137
            L DG+
Sbjct: 741 ILHDGI 746


>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  ++  LC++G V  A +L  +M++     N  TYNSL+ G C   +  ++  L
Sbjct: 130 PDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQL 189

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ +GL  +  T++ +++   K R  DEA++LLD +I  G +P      N+V+Y  L
Sbjct: 190 LDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKP------NLVSYNVL 243

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK G+ ++A +L + L   G  PNVV+YNI + +LCN+ + ++A+ L  +M+    
Sbjct: 244 LTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDER 303

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +P+ V +  L+ S      T   +E+L  M +    P AS  + I+  L K+
Sbjct: 304 SPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKD 355



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 11/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V+YN ++ GLCKEG  + A +LF ++  +  +PNVV+YN L+   C      EA  
Sbjct: 234 KPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANV 293

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM         VT+N+++  L  + + + A  +L+ MI+   +P A       +Y  
Sbjct: 294 LLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTA------SSYNP 347

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK  K+    +    +      PN  TYN  I  LC +  + +A  +   +  K 
Sbjct: 348 IIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYN-AIATLCEEGMVQEAFSIIQSLGNKQ 406

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
                  +  ++ S  RK  T    +LL  M K    P    Y+S++
Sbjct: 407 HFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLI 453



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ TY+++I GLC EG +++A E+F  M +ENI  +   YNSLI G C +   + A  +
Sbjct: 444 PDSFTYSSLIRGLCMEGMLNEAIEIFSVM-EENIKLDTENYNSLILGCCKSRRTDLALDV 502

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           F  M+ +G  ++  T+ ++++ +   ++MD AT +L
Sbjct: 503 FEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVL 538



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +D+  K  ++++A   L+ M++ G +PD F          L+  LCK  K++ A ++ + 
Sbjct: 69  LDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQ------LLYDLCKTCKMRKAIKVMEM 122

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +  +G++P+  +Y   + +LC    +  A  L   ME  G   N   + +L+        
Sbjct: 123 MIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGN 182

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++ ++LL  + ++ ++P A   S +++   K
Sbjct: 183 LTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYK 214


>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Cucumis sativus]
          Length = 566

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  ++  LC++G V  A +L  +M++     N  TYNSL+ G C   +  ++  L
Sbjct: 130 PDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQL 189

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ +GL  +  T++ +++   K R  DEA++LLD +I  G +P      N+V+Y  L
Sbjct: 190 LDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKP------NLVSYNVL 243

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK G+ ++A +L + L   G  PNVV+YNI + +LCN+ + ++A+ L  +M+    
Sbjct: 244 LTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDER 303

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +P+ V +  L+ S      T   +E+L  M +    P AS  + I+  L K+
Sbjct: 304 SPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKD 355



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 11/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V+YN ++ GLCKEG  + A +LF ++  +  +PNVV+YN L+   C      EA  
Sbjct: 234 KPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANV 293

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM         VT+N+++  L  + + + A  +L+ MI+   +P A       +Y  
Sbjct: 294 LLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTA------SSYNP 347

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK  K+    +    +      PN  TYN  I  LC +  + +A  +   +  K 
Sbjct: 348 IIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYN-AIATLCEEGMVQEAFSIIQSLGNKQ 406

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
                  +  ++ S  RK  T    +LL  M K    P    Y+S++
Sbjct: 407 HFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLI 453



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ TY+++I GLC EG +++A E+F  M +ENI  +   YNSLI G C +   + A  +
Sbjct: 444 PDSFTYSSLIRGLCMEGMLNEAIEIFSVM-EENIKLDTENYNSLILGCCKSRRTDLALDV 502

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           F  M+ +G  ++  T+ ++++ +   ++MD AT +L
Sbjct: 503 FEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVL 538



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +D+  K  ++++A   L+ M++ G +PD F          L+  LCK  K++ A ++ + 
Sbjct: 69  LDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQ------LLYDLCKTCKMRKAIKVMEM 122

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +  +G++P+  +Y   + +LC    +  A  L   ME  G   N   + +L+        
Sbjct: 123 MIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGN 182

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++ ++LL  + ++ ++P A   S +++   K
Sbjct: 183 LTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYK 214


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K ++ TYN +I  L + GFV K + L ++M++E I P +VTYN++IHG   +     A+ 
Sbjct: 311 KASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQL 370

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM   GL  D++T+N +++  CK   + EA  LL  + + G+ P       ++ Y  
Sbjct: 371 KFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAP------TVLTYNT 424

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C++G L+ AR L + +   G  P+V TY I ++       +  A + F +M  KG
Sbjct: 425 LIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKG 484

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+C  + T + + +   +T K  +L   M  + + P     ++I+D L K 
Sbjct: 485 LQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKT 537



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 131/280 (46%), Gaps = 31/280 (11%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  G++  P+ +TYN++++G CK G + +A  L   ++   + P V+TYN+LI G+C   
Sbjct: 376 RAMGLL--PDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLG 433

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-- 123
              EA  L  EM+++G   DV T+ ++M+   K R +  A    D M+  G++PD F   
Sbjct: 434 GLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYN 493

Query: 124 -------------------EI--------NIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                              E+        + V Y  +IDGLCK G LK+A++L   +   
Sbjct: 494 TRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSD 553

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P+ +TY   IHA C    + +A  L   M   G+ P+ V +T L+ +  R+      
Sbjct: 554 GLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSA 613

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
               R M    + P     ++++  L +   +L +   F+
Sbjct: 614 YGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFH 653



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 117/262 (44%), Gaps = 41/262 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYNT+IDG C+ G +++A+ L  +M ++   P+V TY  L++G     +   A   
Sbjct: 417 PTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREF 476

Query: 74  FIEMMDRGLQSD-----------------------------------VVTFNVIMDELCK 98
           F EM+ +GLQ D                                    VT+NVI+D LCK
Sbjct: 477 FDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCK 536

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              + +A  L   M+  G++PD       + Y CLI   C+ G L  AR+L   +   GL
Sbjct: 537 TGNLKDAKDLKMKMVSDGLQPDC------ITYTCLIHAHCERGLLSEARKLLNGMVSDGL 590

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+VVTY I IH  C    +  A+  F  M   G+ PN + +  L+ +  R   T     
Sbjct: 591 QPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYH 650

Query: 219 LLRSMDKRNVMPYASILSIIVD 240
               M +R + P     ++++D
Sbjct: 651 HFHEMLERGLAPNKYTYTLLID 672



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN IIDGLCK G +  AK+L ++M  + + P+ +TY  LIH  C     +EA  L
Sbjct: 522 PDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKL 581

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  GLQ  VVT+ +++   C+   +  A      M+  G+ P      N + Y  L
Sbjct: 582 LNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEP------NEITYNVL 635

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LC+ G+   A      +   GL PN  TY + I   C +     A  L+ +M   G+
Sbjct: 636 IHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGI 695

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+      L   F  K      IE L ++
Sbjct: 696 PPDYCTHNALFKGF-DKGHMYHAIEYLENI 724



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YNT I      G   KA +L   M  + I P+ VTYN +I G C   +  +A+ 
Sbjct: 486 QPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKD 545

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L ++M+  GLQ D +T+  ++   C+   + EA +LL+ M+  G++P      ++V Y  
Sbjct: 546 LKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQP------SVVTYTI 599

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C+ G L +A    + +   G+ PN +TYN+ IHALC   +   A+  F +M  +G
Sbjct: 600 LIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERG 659

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +APN   +T L+    R+   +  I L   M +  + P
Sbjct: 660 LAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPP 697



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 11/230 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N ++  L      D  + ++ +M    I P +VTYN+L+  F      +EA  L
Sbjct: 206 PDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASML 265

Query: 74  FIEMMDRG---LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             EM  +G   L +D VT+NV++  L +   ++ A +L+D M +   +  +F       Y
Sbjct: 266 LKEMETQGGGCLLND-VTYNVVISFLAREGHLENAAKLVDSM-RLSKKASSF------TY 317

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI  L + G ++    L   +   G+MP +VTYN  IH L   EQ++ A   F +M  
Sbjct: 318 NPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRA 377

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ P+ + + +++  + +     + + LL  + +  + P     + ++D
Sbjct: 378 MGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLID 427



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 12/170 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY  +I   C+ G + +A++L   M  + + P+VVTY  LIH  C   +   A  
Sbjct: 556 QPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYG 615

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M+D G++ + +T+NV++  LC+  +   A      M++ G+ P+ +       Y  
Sbjct: 616 WFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKY------TYTL 669

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           LIDG C+ G   +A  L   + + G+ P+  T+N            DK H
Sbjct: 670 LIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF------DKGH 713



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G+  DV   N ++  L    + D+   +   M+Q  + P       IV Y  L+D   K
Sbjct: 202 HGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEP------TIVTYNTLLDSFLK 255

Query: 140 IGKLKNARELSQSLTR--AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
            G+   A  L + +     G + N VTYN+ I  L  +  ++ A  L   M +   A + 
Sbjct: 256 EGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASS- 314

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +  L+ + + +    KV  L   M+   +MP     + I+  L+K+E
Sbjct: 315 FTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSE 363


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 113/199 (56%), Gaps = 7/199 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KPN  T+  +IDGLCK+G+ +KA  LFL++ + EN  PNV+TY ++I G+C     N AE
Sbjct: 304 KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAE 363

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M ++GL  +  T+  ++D  CK    + A  L+++M + G  P      N+  Y 
Sbjct: 364 MLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSP------NVCTYN 417

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DGLCK G+++ A ++ +S  R GL  + VTY I I   C   ++ +A  LF  M   
Sbjct: 418 AIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKS 477

Query: 192 GVAPNCVIFTTLMPSFIRK 210
           G+ P+   +TTL+  F R+
Sbjct: 478 GIQPDIHSYTTLIAVFCRE 496



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT TY T+IDG CK G  ++A EL   M +E  +PNV TYN+++ G C      EA  +
Sbjct: 376 PNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKV 435

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
                  GL +D VT+ +++ E CK  ++ +A  L + M++ G++PD      I +Y  L
Sbjct: 436 LKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPD------IHSYTTL 489

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I   C+  ++K +    +   R GL+P   TY   I   C +  +  A   F  M   G 
Sbjct: 490 IAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGC 549

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A + + +  L+    ++++  +   L  +M ++ + P
Sbjct: 550 ASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTP 586



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T T N ++  + + G V+ A+ LF +M    + PN V+Y  ++ G+C   +  E++  
Sbjct: 165 PSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRW 224

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M++RG   D  T ++I+ E C+   +  A        + G+RP      N++ + C+
Sbjct: 225 LGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRP------NLINFTCM 278

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKG 192
           I+GLCK G +K A E+ + +   G  PNV T+   I  LC     +KA  LFL +   + 
Sbjct: 279 IEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSEN 338

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             PN + +T ++  + R  + ++   LL  M ++ + P  +  + ++D
Sbjct: 339 HKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLID 386



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 7/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V+Y  ++ G CK G V ++      M +     +  T + ++  FC       A +
Sbjct: 199 QPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALW 258

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F    + GL+ +++ F  +++ LCK   + +A  +L+ M+  G +P      N+  +  
Sbjct: 259 YFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKP------NVYTHTA 312

Query: 133 LIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           LIDGLCK G  + A  L   L R+    PNV+TY   I   C DE+M++A  L   M+ +
Sbjct: 313 LIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQ 372

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+APN   +TTL+    +     +  EL+  M++    P     + IVD L K
Sbjct: 373 GLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCK 425



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 9/215 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  +Y T+I   C+E  + +++  F +     + P   TY S+I G+C   +   A  
Sbjct: 480 QPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALK 539

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F  M D G  SD +T+  ++  LCK  K+DEA  L D MI+ G+ P   CE+  V    
Sbjct: 540 FFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTP---CEVTRVT--- 593

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L    CKI    +A  + + L +      V T N  +  LC++ ++  A   F  +  K 
Sbjct: 594 LAYEYCKIDDGCSAMVVLERLEKKLW---VRTVNTLVRKLCSERKVGMAALFFHKLLDKD 650

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
              N V     M +    N+   V +L   + K N
Sbjct: 651 PNVNRVTIAAFMTACYESNKYDLVSDLSARIYKEN 685



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 7/103 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +++TY  +I GLCK+  +D+A+ L+  M ++ + P  VT  +L + +C  +DG  A 
Sbjct: 549 CASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSA- 607

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT----RLLD 110
            + +E +++ L   V T N ++ +LC  RK+  A     +LLD
Sbjct: 608 MVVLERLEKKLW--VRTVNTLVRKLCSERKVGMAALFFHKLLD 648



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 58/126 (46%)

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           C++    +IG++K A E+   +   GL P+  T N  +  +     ++ A +LF +M  +
Sbjct: 137 CMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCAR 196

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           GV PNCV +  ++  + +     +    L  M +R  +   + LS+IV    +      +
Sbjct: 197 GVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRA 256

Query: 252 IPQFNR 257
           +  F R
Sbjct: 257 LWYFRR 262


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 132/230 (57%), Gaps = 10/230 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYN +I+GLCK   + +A++L ++M+   ++P+V T+N+LI  +  A    +   
Sbjct: 402 RPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFT 461

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M D+G++S+V++F  ++   CKN K+ EA  +LD MI   V P      N   Y  
Sbjct: 462 VLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVP------NAQVYNS 515

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID   + G  + A  L + +  +G+  ++ TYN+ +  LC + Q+D+A +L  ++  +G
Sbjct: 516 IIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQG 575

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           + P+ V + T++ +   K +T + +ELL+ M K ++ P    Y  +LS +
Sbjct: 576 LRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSAL 625



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 135/262 (51%), Gaps = 29/262 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN ++ GLC+ G +D+ + L  +M   ++ P+  TY+ L  G     D      
Sbjct: 262 KPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLS 321

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           LF E + +G+     T +++++ LCK+ K+ +A ++L++++  G+ P         + +C
Sbjct: 322 LFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYC 381

Query: 124 EI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           ++                    + + Y  LI+GLCK+  +  A +L   + ++G+ P+V 
Sbjct: 382 QVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVE 441

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T+N  I A     Q++K   +  DM+ KG+  N + F +++ +F +  +  + + +L  M
Sbjct: 442 TFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDM 501

Query: 224 DKRNVMPYASILSIIVDLLVKN 245
             ++V+P A + + I+D  +++
Sbjct: 502 IHKDVVPNAQVYNSIIDAYIES 523



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN +I GL + G    A ++F +M D  + PN +TYN++I G     D      L
Sbjct: 193 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRL 252

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M+  G + +VVT+NV++  LC+  +MDE   L+D M    + PD F           
Sbjct: 253 RDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTR 312

Query: 124 -----------------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             + I AY C  L++GLCK GK+  A ++ + L   GL+P    
Sbjct: 313 TGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAI 372

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I+  C    +  A  +F  M+ + + P+ + +  L+    +    ++  +L+  M+
Sbjct: 373 YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEME 432

Query: 225 KRNVMPYASILSIIVD 240
           K  V P     + ++D
Sbjct: 433 KSGVDPSVETFNTLID 448



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T + +++GLCK+G V KA+++   +    + P    YN+LI+G+C   D   A  +F +M
Sbjct: 337 TCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQM 396

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             R ++ D +T+N +++ LCK   + EA  L+  M + GV P      ++  +  LID  
Sbjct: 397 KSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDP------SVETFNTLIDAY 450

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
            + G+L+    +   +   G+  NV+++   + A C + ++ +A  +  DM  K V PN 
Sbjct: 451 GRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNA 510

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            ++ +++ ++I    T +   L+  M    V       ++++  L KN
Sbjct: 511 QVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKN 558



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 108/217 (49%), Gaps = 14/217 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N +++ +++   CK G + +A  +   M  +++ PN   YNS+I  +  +  G E  +
Sbjct: 472 KSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESG-GTEQAF 530

Query: 73  LFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           L +E M   G+ + + T+N+++  LCKN ++DEA  L+  +   G+RPD      +V+Y 
Sbjct: 531 LLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPD------VVSYN 584

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I   C  G    A EL Q + +  + P + TY+  + AL +  ++     L+  M  K
Sbjct: 585 TIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHK 644

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            V P+  I+ T      R    SKV  L + M ++ +
Sbjct: 645 NVEPSSSIYGT------RCENESKVASLKKEMSEKGI 675



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 8/210 (3%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P++ + N L+          +    F  ++  G + D   +N  +        +DEA  +
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 109 LDLM--IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
           L  M   +G   PDAF      +Y  +I GL + GK  +A ++   +   G+ PN +TYN
Sbjct: 181 LRRMGRSEGAPPPDAF------SYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYN 234

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             I        ++    L   M   G  PN V +  L+    R     +   L+  M   
Sbjct: 235 TMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSY 294

Query: 227 NVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           +++P     SI+ D L +   S   +  F 
Sbjct: 295 SMLPDGFTYSILFDGLTRTGDSRTMLSLFG 324


>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
          Length = 581

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 6/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TVT+N+ I GLCKEG V +A +LF +M      P+ VTY +LI G+C A +  EA  
Sbjct: 245 RPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGNVEEAVK 304

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M   G+   V T+N I+ +LC++  M E  RLL  M    V+ D       V    
Sbjct: 305 LRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADH------VTCNT 358

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+  CK G + +A ++ + +  +GL  N  TY   IH  C   ++D A + F  M   G
Sbjct: 359 LINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAFFQMVDAG 418

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            +PN  +F+ L+  F +KN    V+ +   + KR + P  ++   ++  L +  +
Sbjct: 419 FSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGL 473



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            T  YN ++    K G   +A+ +  +M    +  +  +YN++I  +C    G EA    
Sbjct: 177 TTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGMGYEAMCAR 236

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M   G++ D VT+N  +  LCK  ++ EA +L   M+     PD       V Y  LI
Sbjct: 237 DRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDN------VTYTTLI 290

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG C+ G ++ A +L   +  AG++P V TYN  +  LC D  M + H L  +M+ + V 
Sbjct: 291 DGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQ 350

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            + V   TL+ ++ ++ + +   ++ + M
Sbjct: 351 ADHVTCNTLINAYCKRGDMTSACKVKKKM 379



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 1/122 (0%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TY  +I G CK   +D AKE F QM D   +PN   ++ L+ GFC  N+ +    + 
Sbjct: 387 NHFTYKALIHGFCKARELDGAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIP 446

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            E+M RGL  D   +  ++  LC+   +D+A R+ D M   G+  D+     + AY  L 
Sbjct: 447 DELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQRVFDQMQSKGLVGDSLVYATL-AYTYLT 505

Query: 135 DG 136
            G
Sbjct: 506 KG 507



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 8/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  ++  ++  L +      A  +F  M+   + P+     +L+     A     A  +
Sbjct: 108 PHVPSWLVLV--LAQSARPHDAVRVFDHMRARGLAPDAHACTALLTALARARMTATARRV 165

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   GL +    +N ++    K     +A  ++  M   GV  D F      +Y  +
Sbjct: 166 FDEMARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRF------SYNTV 219

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I   C+ G    A      + + G+ P+ VT+N +IH LC + ++ +A  LF +M     
Sbjct: 220 IALYCRKGMGYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQA 279

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+ V +TTL+  + R     + ++L   M+   ++P  +  + I+  L ++
Sbjct: 280 TPDNVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCED 331


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 118/211 (55%), Gaps = 8/211 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ GV  KP+ VTY T+I  LC+ G +D A E F QM D+ + P+   Y+ LI GFC
Sbjct: 422 NEMRDHGV--KPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFC 479

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 +A+ L +E+M+ G++ D+V F+ I++ LCK  ++ +A  + DL +  G  PDA 
Sbjct: 480 THGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDA- 538

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                V Y  L+DG C +GK++ A  +  ++  AG+ PNVV Y   ++  C   ++D+  
Sbjct: 539 -----VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGL 593

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
            LF +M  KG+ P+ +++  ++        T
Sbjct: 594 SLFREMLQKGIKPSTILYNIIIDGLFVAGRT 624



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 41/259 (15%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G VC P+ V Y T+ID   KEG V+KA +LF +M    I P++VTY+S++H  C A  
Sbjct: 214 EGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARA 273

Query: 67  GNEAEYLFIEMMDRG-----------------------------------LQSDVVTFNV 91
             +AE    +M+++G                                   +  DVVT N+
Sbjct: 274 MGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNM 333

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M  LCK  K+ EA  + D M   G  PD F      +Y  +++G    G L +  +L  
Sbjct: 334 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVF------SYKIMLNGYATKGCLVDMTDLFD 387

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G+ P++ T+++ I A  N   +DKA  +F +M   GV P+ V +TT++ +  R  
Sbjct: 388 LMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIG 447

Query: 212 ETSKVIELLRSMDKRNVMP 230
           +    +E    M  + V P
Sbjct: 448 KMDDAMEKFNQMIDQGVAP 466



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 128/260 (49%), Gaps = 33/260 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAE 71
           P+  +Y  +++G   +G +    +LF  M  + I P++ T++ LI    YAN G  ++A 
Sbjct: 361 PDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKA--YANCGMLDKAM 418

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            +F EM D G++ DVVT+  ++  LC+  KMD+A    + MI  GV PD          F
Sbjct: 419 IIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 478

Query: 123 C--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C                     ++IV +  +I+ LCK+G++ +A+ +       G  P+ 
Sbjct: 479 CTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDA 538

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V Y++ +   C   +M+KA  +F  M   G+ PN V++ TL+  + +     + + L R 
Sbjct: 539 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFRE 598

Query: 223 MDKRNVMPYASILSIIVDLL 242
           M ++ + P   + +II+D L
Sbjct: 599 MLQKGIKPSTILYNIIIDGL 618



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 2   ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           A G R    V  P + TY  ++D   +    + A   F Q+    +  +++  N L+ GF
Sbjct: 105 AQGPR----VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGF 160

Query: 62  CYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           C A   +EA + L     + G   DV ++++++  LC   K  +A  LL +M +GG    
Sbjct: 161 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG---- 216

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A C  ++VAY  +ID   K G +  A +L + + + G+ P++VTY+  +HALC    M K
Sbjct: 217 AVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGK 276

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A      M  KGV P+   +  L+  +    +  + + + + M + +++P    L++++ 
Sbjct: 277 AEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMG 336

Query: 241 LLVK 244
            L K
Sbjct: 337 SLCK 340



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y T+++G CK G +D+   LF +M  + I P+ + YN +I G   A     A+ 
Sbjct: 570 EPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKV 629

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM + G+  +  T+N+++    KNR  DEA  L   +    V+      I+I+    
Sbjct: 630 KFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVK------IDIITLNT 683

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           +I G+ +  +++ A++L  S++R+GL+P VVT
Sbjct: 684 MIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 715



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 7/186 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y+ ++DG C  G ++KA  +F  M    I PNVV Y +L++G+C     +E   L
Sbjct: 536 PDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSL 595

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G++   + +N+I+D L    +   A      M + G+       IN   Y  +
Sbjct: 596 FREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGI------AINKCTYNIV 649

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G  K      A  L + L    +  +++T N  I  +    ++++A DLF  +   G+
Sbjct: 650 LRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGL 709

Query: 194 APNCVI 199
            P CV+
Sbjct: 710 VP-CVV 714


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+  TYN+I+D LCK   +DKA+ +  QM D+ + P+ VTYN++IHG+  +    
Sbjct: 262 GVV--PDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWK 319

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           E+  +F +M  +GL  D VTF+  M  LCK+ +  +A  +   M   G  PD      IV
Sbjct: 320 ESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPD------IV 373

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  L+ G    G+  +   L  S+   G++ N    NI I A      MD+A  +F +M
Sbjct: 374 SYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEM 433

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + +GV PN V ++TL+ +F R    +  +E    M    + P  ++   ++
Sbjct: 434 QGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLI 484



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 7/246 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY+T+I   C+ G +  A E F QM    I PN   Y+SLIHGFC   D  +A+ 
Sbjct: 439 RPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKE 498

Query: 73  LFIEMMDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
              EMM +GL + ++V F+ I+  LC   ++ +A  + +L+I  G RP       IV + 
Sbjct: 499 FISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRP------TIVTFN 552

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG C +GK++ A  +  ++   G+ P+VVT N  +   C   ++D    LF +M  K
Sbjct: 553 SLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHK 612

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
            V P  V +  ++   +R   TS   ++   M             I++  L +N+++  +
Sbjct: 613 KVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEA 672

Query: 252 IPQFNR 257
           I  F++
Sbjct: 673 ITLFHK 678



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 129/249 (51%), Gaps = 6/249 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ V++NT+I G  K+G V KA  LF +M  + + P+V TYNS++   C A   +
Sbjct: 225 GGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMD 284

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +AE++  +M+D+G++ D VT+N I+     +    E+ ++   M   G+ PD       V
Sbjct: 285 KAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDT------V 338

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +   +  LCK G+ K+A E+ Q +T  G MP++V+Y+I +H    + +    ++LF  M
Sbjct: 339 TFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSM 398

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             KG+  NC     L+ +  ++    + + +   M  + V P     S ++    +    
Sbjct: 399 ADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRL 458

Query: 249 LNSIPQFNR 257
            +++ +F++
Sbjct: 459 ADAMEKFSQ 467



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN--INPNVVTYNSLIHGFCYANDGNE 69
           C P+ ++YNT+I  LC +    +A ++  +M  E    +P+VV++N++IHGF    + ++
Sbjct: 191 CVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSK 250

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  LF EM+ +G+  DV T+N I+D LCK R MD+A  +L  M+  GV PD       V 
Sbjct: 251 ACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDG------VT 304

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I G    G  K + ++ + +T  GL+P+ VT++  + +LC   +   A ++F  M 
Sbjct: 305 YNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMT 364

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            KG  P+ V ++ L+  +  +   + +  L  SM  + ++     ++I++    K
Sbjct: 365 TKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAK 419



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT NT++ G CK G +D    LF +M  + + P  VTYN ++ G   A   + A+ 
Sbjct: 580 EPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKK 639

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM+D G   D+ T+ +++  LC+N   DEA  L   +  G +     C+ +I     
Sbjct: 640 MFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKL--GAMD----CKFDITILNT 693

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+ L K+ + + A +L  +++ +GL+PNV TY + I  L  +  +++A  +F  ME  G
Sbjct: 694 MINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSG 753

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            AP+  +   ++   ++K +  K    +  +D   +   AS  S+++ L 
Sbjct: 754 CAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLF 803



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+N++IDG C  G ++KA  +   M    I P+VVT N+L+ G+C +   ++   
Sbjct: 545 RPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLI 604

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ + ++   VT+N+++D L +  +   A ++   MI  G        ++I  Y  
Sbjct: 605 LFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGT------AVDIDTYKI 658

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLC+      A  L   L       ++   N  I+AL    + ++A+DLF  +   G
Sbjct: 659 LLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSG 718

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + PN   +  ++ + +++    +   +  SM+K    P + +L+ I+ +L++ 
Sbjct: 719 LVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQK 771



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 46/255 (18%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG------ 67
           P+TVT+++ +  LCK G    A+E+F  M  +   P++V+Y+ L+HG  YA +G      
Sbjct: 335 PDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHG--YATEGRFADMN 392

Query: 68  -------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                                          +EA  +F EM  +G++ +VVT++ ++   
Sbjct: 393 NLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAF 452

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C+  ++ +A      MI  G+ P      N   Y  LI G C  G L  A+E    +   
Sbjct: 453 CRMGRLADAMEKFSQMISIGIEP------NTAVYHSLIHGFCMHGDLVKAKEFISEMMSK 506

Query: 157 GLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
           GL  PN+V ++  IH+LC + ++  A D+F  +   G  P  V F +L+  +    +  K
Sbjct: 507 GLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEK 566

Query: 216 VIELLRSMDKRNVMP 230
              +L +M    + P
Sbjct: 567 AFGVLDAMVSVGIEP 581



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 6/241 (2%)

Query: 7   EFGVVCKPNTV-TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           E G    P TV TY  ++D  C+    D       ++    +    +   + +   C+A 
Sbjct: 114 EAGPRVAPLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAK 173

Query: 66  DGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
             +EA + L   M +     D +++N ++  LC + +  EA  ++  M + G R    C 
Sbjct: 174 RTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGR----CS 229

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++V++  +I G  K G++  A  L   + + G++P+V TYN  + ALC    MDKA  +
Sbjct: 230 PDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFV 289

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M  KGV P+ V +  ++  +       +  ++ R M  + ++P     S  +  L K
Sbjct: 290 LRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCK 349

Query: 245 N 245
           +
Sbjct: 350 H 350


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 119/216 (55%), Gaps = 6/216 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F ++  P+ VT+NTIID  C+   VD+  +L  ++    +  N  TYN+LIHGFC  ++ 
Sbjct: 424 FDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNL 483

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           N A+ LF EM+  G+  D +T N+++   C+N K++EA  L +++    +      +++ 
Sbjct: 484 NAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKI------DLDT 537

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           VAY  +I G+CK  K+  A +L  SL   G+ P+V TYN+ I   C    +  A+ LF  
Sbjct: 538 VAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHK 597

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           M+  G  P+   + TL+   ++  E  K IEL+  M
Sbjct: 598 MKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 633



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 25/233 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V Y+ IID LCK+G    A+ LF +M ++ I PNV TYN +I GFC     ++A+ 
Sbjct: 293 KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 352

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
           L  +M++R +  DV+TFN ++    K  K+ EA +L D M+   + PD          FC
Sbjct: 353 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 412

Query: 124 EIN----------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           + N                +V +  +ID  C+  ++    +L + ++R GL+ N  TYN 
Sbjct: 413 KHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            IH  C  + ++ A DLF +M   GV P+ +    L+  F    +  + +EL 
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELF 525



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+  G     + VTY TI++G+CK G    A  L  +M++ +I P+VV Y+++I   C  
Sbjct: 250 NKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKD 309

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++A+YLF EM+++G+  +V T+N ++D  C   +  +A RLL  MI+  + PD    
Sbjct: 310 GHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD---- 365

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ +  LI    K GKL  A +L   +    + P+ VTYN  I+  C   + D A  +
Sbjct: 366 --VLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHM 423

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           F  M     +P+ V F T++  + R     + ++LLR + +R ++   +  + ++
Sbjct: 424 FDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI 474



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 114/226 (50%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN++I G CK    D AK +F    D   +P+VVT+N++I  +C A   +E   L
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMF----DLMASPDVVTFNTIIDVYCRAKRVDEGMQL 454

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+  RGL ++  T+N ++   C+   ++ A  L   MI  GV PD     NI+ YG  
Sbjct: 455 LREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI-TCNILLYG-- 511

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
               C+  KL+ A EL + +  + +  + V YNI IH +C   ++D+A DLF  + + GV
Sbjct: 512 ---FCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 568

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+   +  ++  F  K+  S    L   M      P  S  + ++
Sbjct: 569 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 614



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +T+NT+I+GLC EG V +A  L  +M  + ++ +VVTY ++++G C   D   A  L
Sbjct: 224 PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 283

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M +  ++ DVV ++ I+D LCK+    +A  L   M++ G+ P      N+  Y C+
Sbjct: 284 LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP------NVFTYNCM 337

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  G+  +A+ L + +    + P+V+T+N  I A   + ++ +A  L  +M  + +
Sbjct: 338 IDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCI 397

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
            P+ V + +++  F + N       +   M   +V+ + +I+ +
Sbjct: 398 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDV 441



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 23/234 (9%)

Query: 13  KPNTVTYNTIIDGLCKE----------------GFVDKAKELFLQMKDENINPNVVTYNS 56
           +P+ VT+NT++ GLC E                GF++ A  LF QM +  + P V+T+N+
Sbjct: 173 QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE-AVALFDQMVEIGLTPVVITFNT 231

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           LI+G C      EA  L  +M+ +GL  DVVT+  I++ +CK      A  LL  M +  
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           ++PD      +V Y  +ID LCK G   +A+ L   +   G+ PNV TYN  I   C+  
Sbjct: 292 IKPD------VVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFG 345

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +   A  L  DM  + + P+ + F  L+ + +++ +  +  +L   M  R + P
Sbjct: 346 RWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFP 399



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 118/245 (48%), Gaps = 21/245 (8%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA---- 70
           N  ++N +I   C    +  +   F ++      P+VVT+N+L+HG C  +  +EA    
Sbjct: 140 NIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALF 199

Query: 71  -----------EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
                        LF +M++ GL   V+TFN +++ LC   ++ EA  L++ M+  G+  
Sbjct: 200 GYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLH- 258

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                I++V YG +++G+CK+G  K+A  L   +    + P+VV Y+  I  LC D    
Sbjct: 259 -----IDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 313

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            A  LF +M  KG+APN   +  ++  F      S    LLR M +R + P     + ++
Sbjct: 314 DAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373

Query: 240 DLLVK 244
              VK
Sbjct: 374 SASVK 378



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 26/213 (12%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D A  L+ +M+   I  N+ ++N LI  FC  +  + +   F ++   G Q DVVTFN +
Sbjct: 123 DVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTL 182

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +  LC   ++ EA  L   M++ G     F E                     A  L   
Sbjct: 183 LHGLCLEDRISEALALFGYMVETG-----FLE---------------------AVALFDQ 216

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   GL P V+T+N  I+ LC + ++ +A  L   M  KG+  + V + T++    +  +
Sbjct: 217 MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 276

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           T   + LL  M++ ++ P   I S I+D L K+
Sbjct: 277 TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKD 309



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 61/108 (56%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TV YN II G+CK   VD+A +LF  +    + P+V TYN +I GFC  +  ++A  LF
Sbjct: 536 DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLF 595

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
            +M D G + D  T+N ++    K  ++D++  L+  M   G   DAF
Sbjct: 596 HKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAF 643



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +I G C +  +  A  LF +MKD    P+  TYN+LI G   A + +++  
Sbjct: 569 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIE 628

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCK 98
           L  EM   G   D  T  +  + +C+
Sbjct: 629 LISEMRSNGFSGDAFTIKMAEEIICR 654


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++D  CKEG +  A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMDEA +L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GKL  A E+ + +   G  P+ +TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALIS 354



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 8/243 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           +G  ++G+  +P+ V++NT+++G  K G +D+   L   M    + P+V TY+ LI+G C
Sbjct: 160 DGITKWGL--RPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLC 217

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
             +  +EA  LF EM+DRGL  + VTF  ++D  CKN K+D A  +   M+  G  PD  
Sbjct: 218 KESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDX- 276

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                + Y  LI GLCK G L  A++L   ++  GL P+ +TY   I   C +  ++ A 
Sbjct: 277 -----ITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAF 331

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +    M  + +  + V +T L+    ++  +    ++LR M    + P     +I++   
Sbjct: 332 EYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEF 391

Query: 243 VKN 245
            KN
Sbjct: 392 CKN 394



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 7/186 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G +D A E++ QM  +  +P+ +TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       V+Y  L
Sbjct: 299 XDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD------VSYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK G+  +A ++ + +   GL P+  TY I +H  C +  +     L  +M+  G 
Sbjct: 353 ISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGH 412

Query: 194 APNCVI 199
            P CVI
Sbjct: 413 VP-CVI 417



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D+A +LF +M D  + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ +G   D +T+N ++  LCK   + +A  L D M   G++PD       + Y  
Sbjct: 263 IYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + + +  +  + V+Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T +M  F +  +     +LL+ M +   +P
Sbjct: 377 LKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVP 414



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 35/140 (25%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV---------------------- 163
           ++  +  L+D  CK G+++ A+ +   +T+ GL P+VV                      
Sbjct: 135 SLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 164 -------------TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                        TY++ I+ LC + +MD+AH LF +M  +G+ PN V FTTL+    + 
Sbjct: 195 SAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKN 254

Query: 211 NETSKVIELLRSMDKRNVMP 230
            +    +E+ + M  +   P
Sbjct: 255 GKLDLAMEIYKQMLSQGFSP 274



 Score = 44.3 bits (103), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V+Y  +I GLCKEG    A+++  +M    + P+  TY  ++H FC   D      L  E
Sbjct: 347 VSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    V+T
Sbjct: 407 MQRDGHVPCVIT 418



 Score = 37.0 bits (84), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 23/113 (20%), Positives = 49/113 (43%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +       ++  +NI +   C + ++  A  +F  +   G
Sbjct: 107 VLEHLMKLKYFKLVWSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+ V F TLM  +I+  +  +   L  +M    V P     S++++ L K 
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKE 219


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 111/190 (58%), Gaps = 6/190 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P++ TY T+I+GLCK G   +AKELF +M  +  +P+VVTY+ L+HG C A + +EA 
Sbjct: 187 CDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAM 246

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M  + ++ +V T++ +MD LCKN    EA  LL++M++   +P      N+V Y 
Sbjct: 247 GLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKP------NMVTYS 300

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK GKL  A E    +   GL P+   Y   I+  CN  +  +A     +M + 
Sbjct: 301 TLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLG 360

Query: 192 GVAPNCVIFT 201
            ++PN V ++
Sbjct: 361 QISPNRVTWS 370



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 9/237 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           RE GV  + + V+ N +I  LCK  G +D A E+F +M     +P+  TY +LI+G C  
Sbjct: 147 REMGV--RQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKL 204

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA+ LF EM  +G    VVT++ +M  LC+   +DEA  L D M +  + P     
Sbjct: 205 GKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEP----- 259

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+  Y  L+DGLCK G    A EL + + R    PN+VTY+  I+ LC + ++ +A + 
Sbjct: 260 -NVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVET 318

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
              M+++G+ P+  ++  ++  F    +  +    L  M    + P     S+ V L
Sbjct: 319 LDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKL 375



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 7/226 (3%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A  +F +M D    P   +Y S+       N    A   +  M + G++  VV+ NV++ 
Sbjct: 104 AIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIK 163

Query: 95  ELCKNR-KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
            LCKN   +D A  +   M + G  PD++       YG LI+GLCK+GK   A+EL + +
Sbjct: 164 ALCKNSGTIDAAFEIFREMPKRGCDPDSY------TYGTLINGLCKLGKTFEAKELFKEM 217

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              G  P+VVTY+  +H LC    +D+A  LF  M+ K + PN   +++LM    +   +
Sbjct: 218 DTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGS 277

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            + +ELL  M ++   P     S +++ L K      ++   +R K
Sbjct: 278 LEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMK 323



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 42/150 (28%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE- 71
           KPN VTY+T+I+GLCKEG + +A E   +MK + + P+   Y  +I+GFC      EA  
Sbjct: 293 KPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAAT 352

Query: 72  -----------------------------------------YLFIEMMDRGLQSDVVTFN 90
                                                     L+I M  RG+  D  TF+
Sbjct: 353 YLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFD 412

Query: 91  VIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            ++   CK   + +A R+ D M+  G  PD
Sbjct: 413 SLVKCFCKKGDLHKAARIFDEMVLDGCVPD 442



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 7/99 (7%)

Query: 14  PNTVTY-------NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           PN VT+       N ++ GLC  G ++++ +L++ M+   I+ +  T++SL+  FC   D
Sbjct: 364 PNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGD 423

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
            ++A  +F EM+  G   D   ++ ++      RK+ EA
Sbjct: 424 LHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVREA 462


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 112/216 (51%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y T++D LC  G VD A   F  +K E + PN+V + +LIHG C  +  ++ E L
Sbjct: 415 PDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEEL 474

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+DRG+  D + FN IM  LCK  ++ EA  L DLM++ G+ P      N   Y  L
Sbjct: 475 AFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEP------NTNTYNTL 528

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L   +   G+ P+ VTYN  I+    + +++    L  +M+ KGV
Sbjct: 529 IDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGV 588

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            P  V +  L+    +   T    EL   M K + +
Sbjct: 589 NPGIVTYEMLLQGLFQAGRTVAAKELYLRMIKWDTV 624



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 41/250 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY++II  L K   +DKA ++F +M    + P+ + Y SL+HG+C +    EA  +
Sbjct: 240 PDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGI 299

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M   G++ DVVT+  +MD LCKN K  EA ++ D +++ G +PD+        YG L
Sbjct: 300 FKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDS------TTYGTL 353

Query: 134 IDGLCKIGKL-----------KNARELSQ------------------------SLTRAGL 158
           + G    G L           K   +L                          ++ + GL
Sbjct: 354 LHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGL 413

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P++V Y   +  LC   ++D A   F  ++ +G+APN V+FTTL+      ++  KV E
Sbjct: 414 NPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEE 473

Query: 219 LLRSMDKRNV 228
           L   M  R +
Sbjct: 474 LAFEMIDRGI 483



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 6/248 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V Y T+I+GL +EG +DKA  LF  M D   +P+VVTY+S+I         ++A 
Sbjct: 203 CPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKAT 262

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M+  G+  D + +  ++   C + K  EA  +   M + GV PD      +V Y 
Sbjct: 263 QVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPD------VVTYT 316

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK GK   AR++  SL + G  P+  TY   +H    +  + + HDL   M  K
Sbjct: 317 ALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKK 376

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+     IF  +M ++ + N+  + + +  +M ++ + P       ++D+L       ++
Sbjct: 377 GMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDA 436

Query: 252 IPQFNRQK 259
           + QFN  K
Sbjct: 437 LSQFNSLK 444



 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EA 70
           +P+ VTY  ++D LCK G   +A+++F  +      P+  TY +L+HG  YA +G   E 
Sbjct: 309 EPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHG--YATEGALVEM 366

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L   MM +G+Q     FN+IM    K+ K+DEA  +   M Q G+ PD      IV Y
Sbjct: 367 HDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPD------IVNY 420

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           G ++D LC  G++ +A     SL   GL PN+V +   IH LC  ++ DK  +L  +M  
Sbjct: 421 GTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMID 480

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +G+  + + F  +M +  +K    +   L   M +  + P  +  + ++D
Sbjct: 481 RGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLID 530



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 124/253 (49%), Gaps = 7/253 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKE-GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           R       PN  TY  +I G C+  G +D A     ++    +  + + ++ L+ G C  
Sbjct: 89  RAGATSAAPNIATYGIVI-GCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDR 147

Query: 65  NDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
              ++A + +   M + G + D+ ++ +++  LC ++   +A  LL +M     R    C
Sbjct: 148 RRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGR----C 203

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            +++VAY  +I+GL + G+L  A  L  ++   G  P+VVTY+  I AL   + MDKA  
Sbjct: 204 PLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQ 263

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +F  M   GV P+C+++T+L+  +    +  + I + + M +  V P     + ++D L 
Sbjct: 264 VFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLC 323

Query: 244 KNEISLNSIPQFN 256
           KN  S  +   F+
Sbjct: 324 KNGKSTEARKIFD 336



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 57/102 (55%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNT TYNT+IDG C +G +D+A +L   M    + P+ VTYN++I+G+       +   
Sbjct: 519 EPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLT 578

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           L  EM  +G+   +VT+ +++  L +  +   A  L   MI+
Sbjct: 579 LLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMIK 620


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 130/241 (53%), Gaps = 11/241 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN II G+CKEG V++A EL   +  +   P+V++YN L+  F      +E E L
Sbjct: 240 PDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKL 299

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG + + VT+++++  LC+  ++DEA  +L +MI+  + PD +      +Y  L
Sbjct: 300 VAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTY------SYDPL 353

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LCK G+L  A  +   +   G +P++V YN  + ALC +   ++A ++F  +   G 
Sbjct: 354 ISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGC 413

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIV-DLLVKNEIS 248
            PN   + T++ +     + S+ + ++ +M  + V P    Y S++S +  D LV+  I 
Sbjct: 414 PPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIG 473

Query: 249 L 249
           L
Sbjct: 474 L 474



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YN +I G CK   ++ A ++  +MK     P++VTYN +I   C       A  
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALK 193

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++       V+T+ ++++       ++EA +LL+ M+  G+ PD +       Y  
Sbjct: 194 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMY------TYNA 247

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G+CK G ++ A EL  SLT  G  P+V++YNI + A  N  + D+   L  +M  +G
Sbjct: 248 IIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 307

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             PN V ++ L+ S  R     + I +L+ M ++ + P
Sbjct: 308 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTP 345



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ ++YN ++     +G  D+ ++L  +M      PN VTY+ LI   C     +EA 
Sbjct: 273 CKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAI 332

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+++ L  D  +++ ++  LCK  ++D A  ++D MI  G  PD      IV Y 
Sbjct: 333 SVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPD------IVNYN 386

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++  LCK G    A E+   L   G  PNV +YN  I AL +     +A  +   M  K
Sbjct: 387 TILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISK 446

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           GV P+ + + +L+    R     + I LL  M++    P     +I++  L K
Sbjct: 447 GVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCK 499



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T +Y+ +I  LCKEG +D A  +   M      P++V YN+++   C   + N+A  +
Sbjct: 345 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 404

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F ++   G   +V ++N ++  L        A  ++  MI  GV PD       + Y  L
Sbjct: 405 FNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDE------ITYNSL 458

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LC+ G ++ A  L   + ++G  P V++YNI +  LC   ++D A  +F +M  KG 
Sbjct: 459 ISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGC 518

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN   +  L+         ++ +EL  S+  R+V+
Sbjct: 519 RPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVI 554



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 10/178 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V YNTI+  LCK G  ++A E+F +++     PNV +YN++I       D + A 
Sbjct: 378 CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRAL 437

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+ +G+  D +T+N ++  LC++  ++EA  LLD M Q G RP       +++Y 
Sbjct: 438 GMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRP------TVISYN 491

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL----CNDEQMDKAHDLF 185
            ++ GLCK+ ++ +A  +   +   G  PN  TY + I  +       E M+ A+ LF
Sbjct: 492 IVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLF 549



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 33/258 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN +I  LC    +  A ++  Q+  +N  P V+TY  LI         NEA  L
Sbjct: 170 PDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKL 229

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF-- 122
             EM+ RGL  D+ T+N I+  +CK   ++ A  L+  +   G +PD         AF  
Sbjct: 230 LEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLN 289

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             CE N V Y  LI  LC+ G++  A  + + +    L P+  +
Sbjct: 290 QGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYS 349

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL---LR 221
           Y+  I ALC + ++D A  +   M   G  P+ V + T++ +  +    ++ +E+   LR
Sbjct: 350 YDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLR 409

Query: 222 SMD-KRNVMPYASILSII 238
            M    NV  Y +++S +
Sbjct: 410 GMGCPPNVSSYNTMISAL 427



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+  G+ C PN  +YNT+I  L   G   +A  +   M  + ++P+ +TYNSLI   C  
Sbjct: 406 NKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRD 465

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA  L  +M   G +  V+++N+++  LCK R++D+A  +   MI+ G RP     
Sbjct: 466 GLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRP----- 520

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSL 153
            N   Y  LI+G+   G    A EL+ SL
Sbjct: 521 -NETTYILLIEGIGFAGWRTEAMELANSL 548



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 91/174 (52%), Gaps = 7/174 (4%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L++  C A   NE+ Y    ++++G   DV+    ++      + +++A+R+++++ +  
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL-ESH 132

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
             PD F      AY  +I G CK+ +++ A ++   +   G +P++VTYNI I +LCN  
Sbjct: 133 TEPDVF------AYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 186

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++  A  +   + +    P  + +T L+ + I +   ++ ++LL  M  R ++P
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLP 240



 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  ++YN ++ GLCK   +D A  +F +M ++   PN  TY  LI G  +A    EA  
Sbjct: 484 RPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEA-- 541

Query: 73  LFIEMMDRGLQSDVVT 88
             +E+ +     DV++
Sbjct: 542 --MELANSLFSRDVIS 555


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 112/216 (51%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y T++D LC  G VD A   F  +K E + PN+V + +LIHG C  +  ++ E L
Sbjct: 416 PDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEEL 475

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+DRG+  D + FN IM  LCK  ++ EA  L DLM++ G+ P      N   Y  L
Sbjct: 476 AFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEP------NTNTYNTL 529

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  GK+  A +L   +   G+ P+ VTYN  I+    + +++    L  +M+ KGV
Sbjct: 530 IDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGV 589

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            P  V +  L+    +   T    EL   M K + +
Sbjct: 590 NPGIVTYEMLLQGLFQAGRTVAAKELYLRMIKWDTV 625



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 41/250 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY++II  L K   +DKA ++F +M    + P+ + Y SL+HG+C +    EA  +
Sbjct: 241 PDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGI 300

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M   G++ DVVT+  +MD LCKN K  EA ++ D +++ G +PD+        YG L
Sbjct: 301 FKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDS------TTYGTL 354

Query: 134 IDGLCKIGKL-----------KNARELSQ------------------------SLTRAGL 158
           + G    G L           K   +L                          ++ + GL
Sbjct: 355 LHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGL 414

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P++V Y   +  LC   ++D A   F  ++ +G+APN V+FTTL+      ++  KV E
Sbjct: 415 NPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEE 474

Query: 219 LLRSMDKRNV 228
           L   M  R +
Sbjct: 475 LAFEMIDRGI 484



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 6/248 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V Y T+I+GL +EG +DKA  LF  M D   +P+VVTY+S+I         ++A 
Sbjct: 204 CPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKAT 263

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M+  G+  D + +  ++   C + K  EA  +   M + GV PD      +V Y 
Sbjct: 264 QVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPD------VVTYT 317

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK GK   AR++  SL + G  P+  TY   +H    +  + + HDL   M  K
Sbjct: 318 ALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKK 377

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+     IF  +M ++ + N+  + + +  +M ++ + P       ++D+L       ++
Sbjct: 378 GMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDA 437

Query: 252 IPQFNRQK 259
           + QFN  K
Sbjct: 438 LSQFNSLK 445



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EA 70
           +P+ VTY  ++D LCK G   +A+++F  +      P+  TY +L+HG  YA +G   E 
Sbjct: 310 EPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHG--YATEGALVEM 367

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L   MM +G+Q     FN+IM    K+ K+DEA  +   M Q G+ PD      IV Y
Sbjct: 368 HDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPD------IVNY 421

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           G ++D LC  G++ +A     SL   GL PN+V +   IH LC  ++ DK  +L  +M  
Sbjct: 422 GTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMID 481

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +G+  + + F  +M +  +K    +   L   M +  + P  +  + ++D
Sbjct: 482 RGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLID 531



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 117/257 (45%), Gaps = 14/257 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKE------GFVDKAKELFLQMKDENINPNVVTYNSLIH 59
           R       PN  TY  +I G C+        F    + +   ++ E   PN +  +S   
Sbjct: 89  RAGATSAAPNIATYGIVI-GCCRRLGRLDLAFATVGRVITTGLRHE---PNPLQSSSQGP 144

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
                      + +   M + G + D+ ++ +++  LC ++   +A  LL +M     R 
Sbjct: 145 LCTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGR- 203

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
              C +++VAY  +I+GL + G+L  A  L  ++   G  P+VVTY+  I AL   + MD
Sbjct: 204 ---CPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 260

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           KA  +F  M   GV P+C+++T+L+  +    +  + I + + M +  V P     + ++
Sbjct: 261 KATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALM 320

Query: 240 DLLVKNEISLNSIPQFN 256
           D L KN  S  +   F+
Sbjct: 321 DYLCKNGKSTEARKIFD 337



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 57/102 (55%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNT TYNT+IDG C +G +D+A +L   M    + P+ VTYN++I+G+       +   
Sbjct: 520 EPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLT 579

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           L  EM  +G+   +VT+ +++  L +  +   A  L   MI+
Sbjct: 580 LLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMIK 621


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  T   II G CKEG + +A     +MK+  ++PN V +NSLI G+  A D N  + 
Sbjct: 268 KPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDE 327

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               M + G++ DVVTF+ IM+       MD    + + M++ G+ PD      I AY  
Sbjct: 328 ALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPD------IHAYSI 381

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L  G  + G+ + A  L  S+++ G+  NVV +   I   C   +MD+A  L   M   G
Sbjct: 382 LAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMG 441

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +PN   + TL+  +    +  K  E+L +M++R V+P  S + ++ D
Sbjct: 442 TSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEMSTMQLVAD 489



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 123/271 (45%), Gaps = 44/271 (16%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYA 64
           +E+G  CKP T TYNT+I G    G   ++ +L   M +DEN+ PN  TYN LI  +C  
Sbjct: 157 KEYG--CKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTK 214

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA  +  +M+  G+Q DVVT+N +     +N + ++A RL+  M    V+P     
Sbjct: 215 KKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKP----- 269

Query: 125 INIVAYGCLIDGLCKIGKLKNA-------RELS-------------------------QS 152
            N    G +I G CK G +  A       +EL                          ++
Sbjct: 270 -NERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEA 328

Query: 153 LT---RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
           LT     G+ P+VVT++  ++A  +   MD   ++F DM   G+ P+   ++ L   ++R
Sbjct: 329 LTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVR 388

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             +  K   LL SM K  V     I + I+ 
Sbjct: 389 AGQPRKAESLLTSMSKYGVQTNVVIFTTIIS 419



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+++  N +I+     G VD+A ++F +MK+    P   TYN+LI GF       E+  
Sbjct: 127 KPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMK 186

Query: 73  LFIEMM--DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           L +EMM  D  ++ +  T+N+++   C  +K++EA  +L  M+  G++PD      +V Y
Sbjct: 187 L-LEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPD------VVTY 239

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +     + G+ + A  L   +    + PN  T  I I   C +  M +A      M+ 
Sbjct: 240 NTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKE 299

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            GV PN V+F +L+  ++   +T+ V E L  M++  + P     S I++
Sbjct: 300 LGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMN 349



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 12/237 (5%)

Query: 10  VVCKPN----TVTYNT-IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           ++C+ N    TV   T +++ L  +G   +A+ +F  + +E   P ++TY +L+      
Sbjct: 49  LICRGNNSCQTVHARTKLMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQ 108

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                   L  ++ D G++ D +  N +++    + K+DEA ++   M + G +P     
Sbjct: 109 KRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKP----- 163

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHD 183
                Y  LI G   +G+   + +L + + +   + PN  TYNI I A C  +++++A +
Sbjct: 164 -TTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWN 222

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +   M   G+ P+ V + T+  ++ +  ET K   L+  M    V P      II+ 
Sbjct: 223 VLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIIS 279



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 2/104 (1%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           ++GV  + N V + TII G C  G +D+A  L  +M +   +PN+ TY +LI G+  A  
Sbjct: 404 KYGV--QTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQ 461

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
             +AE +   M +RG+  ++ T  ++ D         EA R+L+
Sbjct: 462 PWKAEEILSTMEERGVVPEMSTMQLVADAWRAIGLFKEANRILN 505


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 14/221 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYNT++DGLC++G ++ A++L ++M +E I P++VTY  L++G C     + A+  
Sbjct: 407 PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEF 466

Query: 74  FIEMMDRGLQSDVVTFNV-IMDELCKNRKMDEATRLLDL---MIQGGVRPDAFCEINIVA 129
           F EM+  GL+ D   +   I+ EL    K+ + +R   L   M+  G  PD      ++ 
Sbjct: 467 FDEMLHEGLELDSYAYATRIVGEL----KLGDTSRAFSLQEEMLAKGFPPD------LII 516

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++DGLCK+G L+ A EL Q +   G++P+ VTY   IHA   + ++ K  ++F +M 
Sbjct: 517 YNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEML 576

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            KG+ P+ V +T L+     K    +       M ++ ++P
Sbjct: 577 SKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILP 617



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 127/264 (48%), Gaps = 33/264 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +I+GL K+G  ++AK L  +M    +  +  TYN LI+G  Y N G  AE
Sbjct: 265 CAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYG--YFNKGMLAE 322

Query: 72  YLFI--EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--------- 120
            L +  EM+ +G    V T+N  +  LCK  +M +A + L  M+   + PD         
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382

Query: 121 AFCEIN--------------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
            +C +                     IV Y  L+DGLC+ G+L+ A++L   +   G+ P
Sbjct: 383 GYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAP 442

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++VTY I ++  C    +  A + F +M  +G+  +   + T +   ++  +TS+   L 
Sbjct: 443 DIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQ 502

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
             M  +   P   I +++VD L K
Sbjct: 503 EEMLAKGFPPDLIIYNVVVDGLCK 526



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 8/234 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EFG+  KP  VTYNT++D  CK G V +  +L  +M+     PN VTYN LI+G     +
Sbjct: 227 EFGI--KPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGE 284

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A+ L  EM+  GL+    T+N ++        + EA  L + M+  G  P       
Sbjct: 285 FEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASP------T 338

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y   I GLCK+G++ +A +    +    L+P+VV+YN  I+  C    + KA  LF 
Sbjct: 339 VATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFD 398

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           ++    + P  V + TL+    R+ E     +L   M    + P     +I+V+
Sbjct: 399 ELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 41/263 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
             P   TYN+ I GLCK G +  A +    M   N+ P+VV+YN+LI+G+C   +  +A 
Sbjct: 335 ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAF 394

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF E+    L   +VT+N ++D LC+  +++ A +L   MI  G+ PD      IV Y 
Sbjct: 395 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPD------IVTYT 448

Query: 132 CLIDGLCKIGKLKNARE-----------------------------------LSQSLTRA 156
            L++G CK+G L  A+E                                   L + +   
Sbjct: 449 ILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAK 508

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+++ YN+ +  LC    +++A +L   M   GV P+ V +T+++ + +      K 
Sbjct: 509 GFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKG 568

Query: 217 IELLRSMDKRNVMPYASILSIIV 239
            E+   M  + + P     ++++
Sbjct: 569 REIFYEMLSKGLTPSVVTYTVLI 591



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + YN ++DGLCK G +++A EL  +M  + + P+ VTY S+IH         +   +
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREI 571

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +GL   VVT+ V++       +++ A      M + G+ P      N++ Y  L
Sbjct: 572 FYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILP------NVITYNSL 625

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+ ++  A      +   G+ PN  +Y I I+  CN     +A  L+  M  +GV
Sbjct: 626 INGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGV 685

Query: 194 APNCVIFTTLM 204
            P+    + L+
Sbjct: 686 QPDSCTHSALL 696



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GV+  P+ VTY +II    + G + K +E+F +M  + + P+VVTY  LIHG        
Sbjct: 544 GVI--PDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLE 601

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A   F EM ++G+  +V+T+N +++ LCK R+MD+A      M++ G+ P+ +      
Sbjct: 602 RAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKY------ 655

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           +Y  LI+  C +G  + A  L + +   G+ P+  T++  +  L  D ++   H
Sbjct: 656 SYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVH 709


>gi|357499035|ref|XP_003619806.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355494821|gb|AES76024.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 302

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 120/208 (57%), Gaps = 6/208 (2%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           +I+GLCK   VD+A  LF ++  +N+ P++V Y+SLI G C +   ++   L  +M DRG
Sbjct: 1   MINGLCKNKMVDEAVNLFKELHLKNMAPDIVAYSSLIDGLCKSGKISDVWDLIDDMHDRG 60

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
            Q+D++ +  ++D L KN ++D+A  LL  +   G+ PD F       Y  L+DGLCK G
Sbjct: 61  QQADIIIYTSLLDALFKNHQVDKAIALLKKIKDRGIEPDMF------TYTMLVDGLCKNG 114

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           +LK+A+E+ + L   G   N   +N+ I+ LC +   D+A  +  +ME  G  P+ V + 
Sbjct: 115 RLKDAQEVYRDLMVKGYHFNACMHNVMINGLCKEGLFDEALFVLSEMEDNGCTPDVVTYK 174

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVM 229
           TL+ +  + +   K ++LLR M  R ++
Sbjct: 175 TLIRALFKNDMNDKAVKLLREMLSRGLL 202



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 8/181 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y+++IDGLCK G +    +L   M D     +++ Y SL+      +  ++A  L
Sbjct: 28  PDIVAYSSLIDGLCKSGKISDVWDLIDDMHDRGQQADIIIYTSLLDALFKNHQVDKAIAL 87

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             ++ DRG++ D+ T+ +++D LCKN ++ +A  +  DLM++G          N   +  
Sbjct: 88  LKKIKDRGIEPDMFTYTMLVDGLCKNGRLKDAQEVYRDLMVKG-------YHFNACMHNV 140

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCK G    A  +   +   G  P+VVTY   I AL  ++  DKA  L  +M  +G
Sbjct: 141 MINGLCKEGLFDEALFVLSEMEDNGCTPDVVTYKTLIRALFKNDMNDKAVKLLREMLSRG 200

Query: 193 V 193
           +
Sbjct: 201 L 201



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           +I+G C     +EA  LF E+  + +  D+V ++ ++D LCK+ K+ +   L+D M   G
Sbjct: 1   MINGLCKNKMVDEAVNLFKELHLKNMAPDIVAYSSLIDGLCKSGKISDVWDLIDDMHDRG 60

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
            + D      I+ Y  L+D L K  ++  A  L + +   G+ P++ TY + +  LC + 
Sbjct: 61  QQAD------IIIYTSLLDALFKNHQVDKAIALLKKIKDRGIEPDMFTYTMLVDGLCKNG 114

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++  A +++ D+ VKG   N  +   ++    ++    + + +L  M+     P      
Sbjct: 115 RLKDAQEVYRDLMVKGYHFNACMHNVMINGLCKEGLFDEALFVLSEMEDNGCTPDVVTYK 174

Query: 237 IIVDLLVKNEIS 248
            ++  L KN+++
Sbjct: 175 TLIRALFKNDMN 186



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 3/125 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY  ++DGLCK G +  A+E++  +  +  + N   +N +I+G C     +EA +
Sbjct: 97  EPDMFTYTMLVDGLCKNGRLKDAQEVYRDLMVKGYHFNACMHNVMINGLCKEGLFDEALF 156

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV---RPDAFCEINIVA 129
           +  EM D G   DVVT+  ++  L KN   D+A +LL  M+  G+     DAF   NI+ 
Sbjct: 157 VLSEMEDNGCTPDVVTYKTLIRALFKNDMNDKAVKLLREMLSRGLLICYYDAFKSNNIIV 216

Query: 130 YGCLI 134
              LI
Sbjct: 217 CTLLI 221



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + + Y +++D L K   VDKA  L  ++KD  I P++ TY  L+ G C      +A+ 
Sbjct: 62  QADIIIYTSLLDALFKNHQVDKAIALLKKIKDRGIEPDMFTYTMLVDGLCKNGRLKDAQE 121

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ ++M +G   +    NV+++ LCK    DEA  +L  M   G  PD      +V Y  
Sbjct: 122 VYRDLMVKGYHFNACMHNVMINGLCKEGLFDEALFVLSEMEDNGCTPD------VVTYKT 175

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLM 159
           LI  L K      A +L + +   GL+
Sbjct: 176 LIRALFKNDMNDKAVKLLREMLSRGLL 202


>gi|297723045|ref|NP_001173886.1| Os04g0349600 [Oryza sativa Japonica Group]
 gi|255675357|dbj|BAH92614.1| Os04g0349600, partial [Oryza sativa Japonica Group]
          Length = 260

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y T++DG CK G +D A  +F  M  + + P  V YN ++HG   A     A+ 
Sbjct: 17  EPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKK 76

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM++ G    + T+ V++  LC+N   DEA  LL+ +    V+ D      I+ +  
Sbjct: 77  MFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFD------IITFNI 130

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  + K+G+ + A+EL  +++  GL+P V TYN+ I  L  +E  ++A +LF+ +E  G
Sbjct: 131 VISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSG 190

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            AP+  +   ++   ++K E +K    L  +D+ N+   AS +S++  L  +
Sbjct: 191 RAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSR 242



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/170 (19%), Positives = 80/170 (47%), Gaps = 6/170 (3%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   G++ +   +  ++D  CKN ++D+A  +   M+  GV+P +      V Y  ++ G
Sbjct: 11  MASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTS------VLYNIILHG 64

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           L +  +   A+++   +  +G   ++ TY + +  LC +   D+A+ L   +    V  +
Sbjct: 65  LFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFD 124

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            + F  ++ + ++     +  EL  ++    ++P     ++++  L+K E
Sbjct: 125 IITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEE 174



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           LLD M   G+ P+ +       YG L+DG CK G++ +A  + + +   G+ P  V YNI
Sbjct: 7   LLDAMASIGIEPNCYI------YGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNI 60

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            +H L    +   A  +F +M   G   +   +  ++    R N T +   LL  +   N
Sbjct: 61  ILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMN 120

Query: 228 VMPYASILSIIVDLLVK 244
           V       +I++  ++K
Sbjct: 121 VKFDIITFNIVISAMLK 137



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K + +T+N +I  + K G   +AKELF  +    + P V TYN +I         
Sbjct: 117 FAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESY 176

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA+ LFI +   G   D    N I+  L K  ++ +A+  L ++ +  +  +A   I++
Sbjct: 177 EEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEA-STISL 235

Query: 128 VAYGCLIDGLCK 139
           +A     +G C+
Sbjct: 236 LASLFSREGKCR 247


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 123/244 (50%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVTYN +I+ L +   +  A  +   M    +  N+VTYN +I G+C   D  +A  +
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ RG  +++VT+N I+   C +     A R+LDLM  GG +PD +      +Y  L
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW------SYTEL 671

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CKI K+++A  L   +   GL PN VTY   I   C DE++D A  L   M+  G 
Sbjct: 672 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 731

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN   +  L+    ++N  S   EL + M +  + P     + ++D L KN  +  ++ 
Sbjct: 732 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791

Query: 254 QFNR 257
            FN+
Sbjct: 792 MFNK 795



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 126/264 (47%), Gaps = 30/264 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTYNTII G C  G    A  +   M+D    P+  +Y  LI GFC  +    A  LF
Sbjct: 629 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 688

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------------- 119
            EM+D GL  + VT+  ++D  CK+ K+D AT LL+ M + G RP               
Sbjct: 689 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 748

Query: 120 ------DAFCEI--------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                 +  C++        N+V Y  +IDGLCK G    A E+   +   G +PN++TY
Sbjct: 749 NNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTY 808

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           +  I AL  + ++++A +LF ++E  G+ P+ + +  ++ ++I   +       L  M K
Sbjct: 809 SSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK 868

Query: 226 RNVMPYASILSIIVDLLVKNEISL 249
               P      +++  L KNE  L
Sbjct: 869 AGCQPTLWTYGVLIKGL-KNEYLL 891



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 99/199 (49%), Gaps = 8/199 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +IDG CK+  +D A  L   MK     PNV TYN LIHG    N+ + AE L
Sbjct: 698 PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 757

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M++ G+  +VVT+  ++D LCKN     A  + + MI+ G  P      N++ Y  L
Sbjct: 758 CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLP------NLLTYSSL 811

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  L + GK++ A  L   L R GL+P+ +TY   I A     +++ A +    M   G 
Sbjct: 812 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 871

Query: 194 APNCVIFTTLMPSFIRKNE 212
            P    +  L+     KNE
Sbjct: 872 QPTLWTYGVLIKGL--KNE 888



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 33/261 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + YN +I+ LCK+G V  A+ +  ++ +  ++P+  TY S+I G C  +D + A  
Sbjct: 382 QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQ 441

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           +F +M   G + + VT++ +++ LC + +++EA  L+  MI  G+ P A           
Sbjct: 442 VFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC 501

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              CE N+  Y  LI GLC  G LK A  L   ++R G+ PN V
Sbjct: 502 DMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTV 561

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  I+ L  + ++  A  +   M   G+  N V +  ++  +    +  K + ++ +M
Sbjct: 562 TYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNM 621

Query: 224 DKR----NVMPYASILSIIVD 240
            +R    N++ Y +I+    D
Sbjct: 622 LQRGHSANLVTYNTIIKGYCD 642



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 125/304 (41%), Gaps = 76/304 (25%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDK-----------------------------------AK 36
           C+PNTVTY+T+I+GLC  G V++                                   A 
Sbjct: 451 CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAW 510

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
            LF+ MK++   PNV TY +LI G C +     A  LF  M   G+  + VT+N +++ L
Sbjct: 511 RLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL 570

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            +NR++  A  +L+LM + G+        NIV Y  +I G C +G  K A  +  ++ + 
Sbjct: 571 VENRRIKYAFVVLNLMGRNGLF------TNIVTYNEMIKGYCILGDPKKAMLVMNNMLQR 624

Query: 157 GLMPNVVTYNITIHALCND-----------------------------------EQMDKA 181
           G   N+VTYN  I   C+                                     +M+ A
Sbjct: 625 GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESA 684

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             LF +M   G+ PN V +T L+  + +  +      LL  M +    P     ++++  
Sbjct: 685 FGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHG 744

Query: 242 LVKN 245
           L K 
Sbjct: 745 LTKQ 748



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EAEYLFI 75
            Y+ ++  L + G      + + +M  E + PN++ YN++I+  C   DGN  +AE +  
Sbjct: 352 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC--KDGNVADAETIMK 409

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           ++ +  +  D  T+  ++   C+   +D A ++ + M + G      CE N V Y  LI+
Sbjct: 410 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG------CEPNTVTYSTLIN 463

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLC  G++  A +L + +   G++P   T    I ALC+    + A  LF+DM+ KG  P
Sbjct: 464 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 523

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           N   +T L+            I L   M +  V P     + ++++LV+N 
Sbjct: 524 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENR 574



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 16/189 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN  TYN +I GL K+     A+EL   M +E I PNVVTY ++I G C     + A 
Sbjct: 731 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLAL 790

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+++G   +++T++ ++  L +  K++EA  L   + + G+ PD   EI  V   
Sbjct: 791 EMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPD---EITYVK-- 845

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+     GK+++A      + +AG  P + TY + I  L N+        L  D  + 
Sbjct: 846 -MIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEY-------LLADQRLA 897

Query: 192 G---VAPNC 197
               V PNC
Sbjct: 898 ALPDVVPNC 906



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 30/216 (13%)

Query: 12   CKPNTVTYNTIIDGL--------------------CKEGF--VDKAKELFLQMKDENINP 49
            C+P   TY  +I GL                    C  G+   D+     +  K   ++P
Sbjct: 871  CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDP 930

Query: 50   --NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
              +V   N+L+     A    EA  L   M+ +GL  D   +N ++  L + R +D A  
Sbjct: 931  GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMG 990

Query: 108  LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
            +   M   G      CE+++  Y  LI  LC++ + K AR   +++      P+ V   +
Sbjct: 991  VFKHMSTQG------CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAV 1044

Query: 168  TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
             I  L  D   D   +    ME +   P+  I+T L
Sbjct: 1045 LIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTIL 1080



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 97  CKNRK-MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           C +++ M      LD++ Q G+R      + + AY  L+  L ++G      +    +  
Sbjct: 325 CHSKEAMARTMSFLDMLSQSGLR------MGLFAYSALLIHLSRLGMTAAVMDRYHRMLS 378

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G+ PN++ YN  I+ALC D  +  A  +   +    ++P+   +T+++    RK++   
Sbjct: 379 EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDS 438

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLL 242
            +++   M K    P     S +++ L
Sbjct: 439 ALQVFNQMAKEGCEPNTVTYSTLINGL 465


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY+T ID  CK G +  A + F  MK + ++PNVVT+  LI G+C A D   A 
Sbjct: 159 CSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAV 218

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+ EM    +  +VVT+  ++D  CK  +M  A  +   M++  V P      N + Y 
Sbjct: 219 SLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEP------NSLVYT 272

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG  + G   NA +    +   G+  ++  Y + I  LC + ++ +A ++  DME  
Sbjct: 273 TIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKS 332

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + P+ VIFTT+M ++ +       + +   + +R   P    LS ++D + KN
Sbjct: 333 DLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKN 386



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 116/215 (53%), Gaps = 10/215 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN---INPNVVTYNSLIHGFCYANDGN 68
           C+P+ ++YN++IDG C+ G +  A  +   ++  +     P++V++NSL +GF      +
Sbjct: 87  CEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLD 146

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           E  ++++ +M +    +VVT++  +D  CK+ ++  A +    M +  + P      N+V
Sbjct: 147 EV-FVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSP------NVV 199

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            + CLIDG CK G L+ A  L + + R  +  NVVTY   I   C   +M +A +++  M
Sbjct: 200 TFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRM 259

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
               V PN +++TT++  F ++ ++   ++ L  M
Sbjct: 260 VEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKM 294



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 113/230 (49%), Gaps = 10/230 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  ++N+++  +CK G V  A+++   M      P+V++YNSLI G C   D   A  +
Sbjct: 54  PHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLV 113

Query: 74  FIEM-MDRGL--QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              +    G   + D+V+FN + +   K + +DE    + +M++        C  N+V Y
Sbjct: 114 LESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKC-------CSPNVVTY 166

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
              ID  CK G+L+ A +   S+ R  L PNVVT+   I   C    ++ A  L+ +M  
Sbjct: 167 STWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRR 226

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             ++ N V +T L+  F +K E  +  E+   M +  V P + + + I+D
Sbjct: 227 VRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIID 276



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 114/216 (52%), Gaps = 11/216 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTY  +IDG CK+G + +A+E++ +M ++ + PN + Y ++I GF    D + A    
Sbjct: 232 NVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFL 291

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M+++G++ D+  + VI+  LC N K+ EAT +++ M +  + PD      +V +  ++
Sbjct: 292 AKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPD------MVIFTTMM 345

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +   K G++K A  +   L   G  P+VV  +  I  +  + Q+ +A   F   +     
Sbjct: 346 NAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEK----- 400

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            N V++T L+ +  ++ +  +V  L   + +  ++P
Sbjct: 401 ANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVP 436



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 114/249 (45%), Gaps = 36/249 (14%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +   Y  II GLC  G + +A E+   M+  ++ P++V + ++++ +  +     A  ++
Sbjct: 302 DITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMY 361

Query: 75  IEMMDRGLQSDVVT------------------------------FNVIMDELCKNRKMDE 104
            ++++RG + DVV                               + V++D LCK     E
Sbjct: 362 HKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDVMYTVLIDALCKEGDFIE 421

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
             RL   + + G+ PD F       Y   I GLCK G L +A +L   + + GL+ +++ 
Sbjct: 422 VERLFSKISEAGLVPDKF------MYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLA 475

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   I+ L +   M +A  +F +M   G++P+  +F  L+ ++ ++   +   +LL  M 
Sbjct: 476 YTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDMQ 535

Query: 225 KRNVMPYAS 233
           +R ++   S
Sbjct: 536 RRGLVTAVS 544



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V Y  +ID LCKEG   + + LF ++ +  + P+   Y S I G C   +  +A  
Sbjct: 400 KANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFK 459

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+  GL  D++ +  ++  L     M EA ++ D M+  G+ PD+        +  
Sbjct: 460 LKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDS------AVFDL 513

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           LI    K G +  A +L   + R GL+  V
Sbjct: 514 LIRAYEKEGNMAAASDLLLDMQRRGLVTAV 543



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 103/212 (48%), Gaps = 10/212 (4%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           V +A +   +++  +  P+  T N  IH    +N G  +      ++ RG      +FN 
Sbjct: 2   VREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFNS 61

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++  +CK  ++  A  ++  M + G  PD      +++Y  LIDG C+ G +++A  + +
Sbjct: 62  VVSFVCKLGQVKFAEDIVHSMPRFGCEPD------VISYNSLIDGHCRNGDIRSASLVLE 115

Query: 152 SLTRA-GLM--PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           SL  + G +  P++V++N   +     + +D+   +++ + +K  +PN V ++T + +F 
Sbjct: 116 SLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVF-VYMGVMLKCCSPNVVTYSTWIDTFC 174

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +  E    ++   SM +  + P     + ++D
Sbjct: 175 KSGELQLALKSFHSMKRDALSPNVVTFTCLID 206


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 125/260 (48%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN++I+G CK G + +A  LF  +K   + P+V+TYN L+ G+C   D  EA   
Sbjct: 370 PDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRF 429

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             EM+++G Q DV T+ ++M+   K R +       D M+  G++PD F           
Sbjct: 430 KQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELI 489

Query: 124 -----------EINI--------VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                      E+ I        V Y   +DGLCK G LK+A  L   +   GL P+ +T
Sbjct: 490 LGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCIT 549

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   IHA C   ++ +A D+F  M V G+ P+ V +T  + ++ R+          + M 
Sbjct: 550 YTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKML 609

Query: 225 KRNVMPYASILSIIVDLLVK 244
           +  V P     ++++  L +
Sbjct: 610 EEGVRPNEVTYNVLIHALCR 629



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  T+N +I G    G V+KA  L L+M++E I P VVTYN++IHG   + +   A  
Sbjct: 299 KASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARM 358

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F+EM   GL  D++T+N +++  CK   + EA  L   + + G+ P      +++ Y  
Sbjct: 359 KFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAP------SVLTYNI 412

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C++G L+ AR   Q +   G  P+V TY I ++       +    + F +M  KG
Sbjct: 413 LLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKG 472

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+C  + T + + +    TS+  +L   M  R +       +I +D L K+
Sbjct: 473 LQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKS 525



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY  +++G  K   +   +E F +M  + + P+   YN+ I         +EA 
Sbjct: 438 CQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAF 497

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+ RG+ SD VT+N+ +D LCK+  + +A  L   M+  G++PD       + Y 
Sbjct: 498 QLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDC------ITYT 551

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           CLI   C+ G+L+ AR++   +  +GL P+ VTY + IHA C    +  A+  F  M  +
Sbjct: 552 CLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEE 611

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           GV PN V +  L+ +  R   T+   +    M +R + P     ++++D
Sbjct: 612 GVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLID 660



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 31/260 (11%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+V  P  VTYNTII G+ + G V+ A+  F++M+   + P+++TYNSLI+G+C A +  
Sbjct: 332 GIV--PTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLK 389

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA------- 121
           EA +LF ++   GL   V+T+N+++D  C+   ++EA R    M++ G +PD        
Sbjct: 390 EALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILM 449

Query: 122 ---------------FCEI-------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
                          F E+       +  AY   I     +G    A +L++ +   G+ 
Sbjct: 450 NGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGIS 509

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            + VTYNI +  LC    +  A+ L++ M   G+ P+C+ +T L+ +   +    +  ++
Sbjct: 510 SDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDI 569

Query: 220 LRSMDKRNVMPYASILSIIV 239
              M    + P A   ++ +
Sbjct: 570 FDGMLVSGLPPSAVTYTVFI 589



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YNT I      G   +A +L   M    I+ + VTYN  + G C + +  +A  
Sbjct: 474 QPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYV 533

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+++M+  GLQ D +T+  ++   C+  ++ EA  + D M+  G+ P A      V Y  
Sbjct: 534 LWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSA------VTYTV 587

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I   C+ G L +A    Q +   G+ PN VTYN+ IHALC   + + A+  F +M  +G
Sbjct: 588 FIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERG 647

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++PN   +T L+    ++    + I L   M +  + P
Sbjct: 648 LSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHP 685



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 6/193 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TVTYN  +DGLCK G +  A  L+++M  + + P+ +TY  LIH  C      EA  +F
Sbjct: 511 DTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIF 570

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+  GL    VT+ V +   C+   +  A      M++ GVRP      N V Y  LI
Sbjct: 571 DGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRP------NEVTYNVLI 624

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC++G+   A +    +   GL PN  TY + I   C +   ++A  L+ +M   G+ 
Sbjct: 625 HALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIH 684

Query: 195 PNCVIFTTLMPSF 207
           P+      L   F
Sbjct: 685 PDHCTHNALFKGF 697



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 42/254 (16%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-------DENINPNVV------------- 52
           +P+ VTYNT++D   +EG VD+A +L  +M+         ++  NVV             
Sbjct: 228 EPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKA 287

Query: 53  ----------------TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                           T+N LI G+       +A  L +EM + G+   VVT+N I+  +
Sbjct: 288 AQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGM 347

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            ++  ++ A      M   G+ PD      ++ Y  LI+G CK G LK A  L   L RA
Sbjct: 348 FRSGNVEAARMKFVEMRAMGLLPD------LITYNSLINGYCKAGNLKEALWLFGDLKRA 401

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P+V+TYNI +   C    +++A     +M  +G  P+   +T LM    +    + V
Sbjct: 402 GLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMV 461

Query: 217 IELLRSMDKRNVMP 230
            E    M  + + P
Sbjct: 462 REFFDEMLSKGLQP 475



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 82/154 (53%), Gaps = 6/154 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY  +I   C+ G + +A+++F  M    + P+ VTY   IH +C   +   A  
Sbjct: 544 QPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYG 603

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M++ G++ + VT+NV++  LC+  + + A +    M++ G+ P+ +       Y  
Sbjct: 604 WFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKY------TYTL 657

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
           LIDG CK G  + A  L   + + G+ P+  T+N
Sbjct: 658 LIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHN 691



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 11/224 (4%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++  L  E   D  + ++ +M    I P++VTYN+L+  F      ++A  L  EM  
Sbjct: 200 NLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEA 259

Query: 80  RG---LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           R    L SD VT+NV+++ L +  ++++A +L+D M +   +  AF       +  LI G
Sbjct: 260 RPGGCLPSD-VTYNVVINGLARKGELEKAAQLVDRM-RMSKKASAF------TFNPLITG 311

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
               G ++ A  L   +   G++P VVTYN  IH +     ++ A   F++M   G+ P+
Sbjct: 312 YFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPD 371

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            + + +L+  + +     + + L   + +  + P     +I++D
Sbjct: 372 LITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLD 415



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN +I  LC+ G  + A + F +M +  ++PN  TY  LI G C   +  EA  
Sbjct: 614 RPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIR 673

Query: 73  LFIEMMDRGLQSDVVTFNVIM 93
           L+ EM   G+  D  T N + 
Sbjct: 674 LYSEMHQHGIHPDHCTHNALF 694



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            PN  TY  +IDG CKEG  ++A  L+ +M    I+P+  T+N+L  GF      +  +Y
Sbjct: 649 SPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHAIQY 708

Query: 73  L 73
           +
Sbjct: 709 M 709



 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           + +   G+ P +   N+ + AL ++ + D    ++ +M   G+ P+ V + TL+ SF R+
Sbjct: 185 REMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFRE 244

Query: 211 NETSKVIELLRSMDKR--NVMPYASILSIIVDLLVK 244
               +  +LLR M+ R    +P     +++++ L +
Sbjct: 245 GRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLAR 280


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 11/242 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T TYN I  GLCKEG VD+A E    +      P+V+TYN L+         +E E 
Sbjct: 147 EPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEK 206

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              E+  RG + +VVT+++++  LC++ K++E+  L+ +M + G+ PDA+C      Y  
Sbjct: 207 WMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYC------YDP 260

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C+ GKL  A E    +   G +P++V YN  + ALC +   D A ++F  ++  G
Sbjct: 261 LIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVG 320

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIV-DLLVKNEI 247
             PN   + T++ +     +  + + ++  M  + + P    Y S++S +  D +V   I
Sbjct: 321 CPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAI 380

Query: 248 SL 249
            L
Sbjct: 381 GL 382



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 7/221 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   YN +I G CK   ++ AK +  +MK +  +P+VVT+N +I  FC     + A  
Sbjct: 41  KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALK 100

Query: 73  LFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +F E++ D   +  ++T+ ++++       +DEA +LLD M+  G+ PD F       Y 
Sbjct: 101 VFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTF------TYN 154

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +  GLCK GK+  A E  ++L   G  P+V+TYNI + AL N  + D+      ++  +
Sbjct: 155 VITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSR 214

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           G  PN V ++ L+ S  R  +  + + L++ M ++ + P A
Sbjct: 215 GCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDA 255



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 7/245 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P+ VT+N +I   C +G +D A ++F ++ KD N  P ++TY  LI  +      +EA  
Sbjct: 77  PDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALK 136

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+ RGL+ D  T+NVI   LCK  K+D A   +  +   G +PD      ++ Y  
Sbjct: 137 LLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD------VITYNI 190

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L   GK     +    +   G  PNVVTY+I I +LC D +++++ +L   M+ KG
Sbjct: 191 LLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKG 250

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P+   +  L+ +F R+ +    IE L  M     +P     + I+  L KN    +++
Sbjct: 251 LTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAV 310

Query: 253 PQFNR 257
             F +
Sbjct: 311 EIFGK 315



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 10/231 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP  +TY  +I+    EG +D+A +L  +M    + P+  TYN +  G C     + A 
Sbjct: 111 CKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAF 170

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                +  RG + DV+T+N+++  L    K DE  + +  +   G      CE N+V Y 
Sbjct: 171 EFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRG------CEPNVVTYS 224

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC+ GK++ +  L + +   GL P+   Y+  I A C + ++D A +    M   
Sbjct: 225 ILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICD 284

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASILSII 238
           G  P+ V + T+M +  +       +E+   +D+     NV  Y ++LS +
Sbjct: 285 GFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSAL 335



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ +TYN ++  L  +G  D+ ++   ++      PNVVTY+ LI   C      E+ 
Sbjct: 181 CKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESV 240

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M ++GL  D   ++ ++   C+  K+D A   LD MI  G  PD      IV Y 
Sbjct: 241 NLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPD------IVNYN 294

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++  LCK G   +A E+   L   G  PNV +YN  + AL +     +A  +   M  K
Sbjct: 295 TIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSK 354

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM----DKRNVMPYASIL 235
           G+ P+ + + +L+    R     + I LL  M     + N++ Y ++L
Sbjct: 355 GIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVL 402



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 10/177 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V YNTI+  LCK G  D A E+F ++ +    PNV +YN+++     + D   A  +
Sbjct: 288 PDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGM 347

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ +G+  DV+T+N ++  LC++  +DEA  LL  M+ G  +P      NIV+Y  +
Sbjct: 348 ISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQP------NIVSYKTV 401

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL----CNDEQMDKAHDLFL 186
           + GLCK  ++ +A E+  ++   G  PN  TY + I  +       + M+ A+ L++
Sbjct: 402 LLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYI 458



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 41/251 (16%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F   C+PN VTY+ +I  LC++G ++++  L   MK++ + P+   Y+ LI  FC     
Sbjct: 212 FSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKL 271

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR----------KMDE------------- 104
           + A      M+  G   D+V +N IM  LCKN           K+DE             
Sbjct: 272 DMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTM 331

Query: 105 ------------ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
                       A  ++  M+  G+ PD      ++ Y  LI  LC+ G +  A  L   
Sbjct: 332 LSALWSSGDRYRALGMISQMLSKGIDPD------VITYNSLISCLCRDGMVDEAIGLLAD 385

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +      PN+V+Y   +  LC   ++D A ++   M   G  PN   +T L+        
Sbjct: 386 MLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGS 445

Query: 213 TSKVIELLRSM 223
            ++ +EL  S+
Sbjct: 446 RTQAMELANSL 456


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 123/210 (58%), Gaps = 9/210 (4%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
            A  NR+ GV  KPN VTYN++I+GLC  G V++A  L  QM +  + PN++T+N+L++G
Sbjct: 238 FAEMNRQ-GV--KPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNG 294

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC      +A  LF +M  + +  +V T+N+++D  CK+  M++A  L  +M+  GV PD
Sbjct: 295 FCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPD 354

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +  Y CLI GLC+ G L+ AR     +    L  +++TYNI + +LCN  +M K
Sbjct: 355 ------VSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNKGEMKK 408

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
              L  +M  KG+ P+ + + T++  + ++
Sbjct: 409 TLRLLDEMCKKGLKPSQLTYNTMIDGYSKE 438



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+N +IDG C +  V  A ++F +M  + + PNVVTYNSLI+G C     NEA  L
Sbjct: 213 PNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTL 272

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++  L+ +++T N +++  CKN+ + +A  L + M +  + P      N+  Y  L
Sbjct: 273 RDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITP------NVTTYNIL 326

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  CK   +++A  L + +   G+ P+V TYN  I  LC    ++ A +   +M+ K +
Sbjct: 327 IDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHL 386

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             + + +  LM S   K E  K + LL  M K+ + P     + ++D
Sbjct: 387 KADLITYNILMDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTMID 433



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 9/230 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  + N ++ GL K   + KA  +  +MK + I PN VT+N LI GFC   + + A  
Sbjct: 180 KLSVTSCNPLMSGLVK---MYKADAILKEMKADGICPNEVTFNILIDGFCNDKNVSVAMK 236

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  +G++ +VVT+N +++ LC N K++EAT L D M+   + P      NI+ +  
Sbjct: 237 VFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEP------NIITHNA 290

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G CK   +K A EL + + +  + PNV TYNI I A C DE M+ A  L+  M  KG
Sbjct: 291 LLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKG 350

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           V P+   +  L+    RK +       +  MD +++       +I++D L
Sbjct: 351 VYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSL 400



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F    D GL+  V + N +M  L K   M +A  +L  M   G+ P      N V +  L
Sbjct: 171 FKRASDYGLKLSVTSCNPLMSGLVK---MYKADAILKEMKADGICP------NEVTFNIL 221

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C    +  A ++   + R G+ PNVVTYN  I+ LCN+ ++++A  L   M    +
Sbjct: 222 IDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCL 281

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN +    L+  F +     +  EL   M K+ + P  +  +I++D   K+E
Sbjct: 282 EPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDE 334


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 12/240 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P++ TY T+I GLC+ G +D+AK+LF +M +++  P VVTY SLI+G C + + +EA 
Sbjct: 188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAM 247

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               EM  +G++ +V T++ +MD LCK+ +  +A  L ++M+  G RP      N+V Y 
Sbjct: 248 RYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRP------NMVTYT 301

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCK  K++ A EL   +   GL P+   Y   I   C   +  +A +   +M + 
Sbjct: 302 TLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILG 361

Query: 192 GVAPNCVIFTTLMPS---FIR---KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ PN + +   + +    +R    N  S+   L  SM  R +      L  +V  L K 
Sbjct: 362 GITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKK 421



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 14/235 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VTY ++I+GLC    VD+A     +MK + I PNV TY+SL+ G C      +A 
Sbjct: 223 CAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAM 282

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  MM RG + ++VT+  ++  LCK +K+ EA  LLD M   G++PDA        YG
Sbjct: 283 ELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAG------LYG 336

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI-------TIHALCNDEQMDKAHDL 184
            +I G C I K + A      +   G+ PN +T+NI        +  LC +    +A  L
Sbjct: 337 KVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYP-SRAFTL 395

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +L M  +G++       +L+    +K E  K ++L+  +     +P      +++
Sbjct: 396 YLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLI 450



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           RE G+   P   + N +I  LC+ +G VD   ++FL+M     +P+  TY +LI G C  
Sbjct: 148 REIGL--PPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRF 205

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA+ LF EM+++     VVT+  +++ LC ++ +DEA R L+ M   G+ P     
Sbjct: 206 GRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEP----- 260

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+  Y  L+DGLCK G+   A EL + +   G  PN+VTY   I  LC ++++ +A +L
Sbjct: 261 -NVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVEL 319

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              M ++G+ P+  ++  ++  F   ++  +    L  M    + P
Sbjct: 320 LDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITP 365



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           +F +MKD + +P+   Y +++      N  N A   +  M + GL   V + NV++  LC
Sbjct: 108 VFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALC 167

Query: 98  KN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           +N   +D   ++   M + G  PD++       YG LI GLC+ G++  A++L   +   
Sbjct: 168 RNDGTVDAGLKIFLEMPKRGCDPDSY------TYGTLISGLCRFGRIDEAKKLFTEMVEK 221

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
              P VVTY   I+ LC  + +D+A     +M+ KG+ PN   +++LM    +   + + 
Sbjct: 222 DCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQA 281

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           +EL   M  R   P     + ++  L K +    ++   +R
Sbjct: 282 MELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDR 322


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 6/221 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N   G   KPN + YNT+I GL  +G + +A +L  +M ++ + P V T+N L++G C  
Sbjct: 380 NEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKM 439

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++A+ L   M+ +G   D+ TFN+++       KM+ A  +LD+M+  GV PD +  
Sbjct: 440 GCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVY-- 497

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                Y  L++GLCK  K ++  E  +++   G  PN+ T+NI + +LC   ++D+A  L
Sbjct: 498 ----TYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGL 553

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
             +M+ K V P+ V F TL+  F +  +      L R M++
Sbjct: 554 LEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EAE 71
           P+  TY ++IDGLC EG  ++A  LF +   + I PNV+ YN+LI G   +N G   EA 
Sbjct: 354 PDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGL--SNQGMILEAA 411

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM ++GL  +V TFN++++ LCK   + +A  L+ +MI  G  PD F       + 
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIF------TFN 465

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G     K++NA E+   +   G+ P+V TYN  ++ LC   + +   + +  M  K
Sbjct: 466 ILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEK 525

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G APN   F  L+ S  R  +  + + LL  M  ++V P A     ++D   KN
Sbjct: 526 GCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 7/230 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N +I G   +  ++ A E+   M D  ++P+V TYNSL++G C  +   +    
Sbjct: 459 PDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMET 518

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  M+++G   ++ TFN++++ LC+ RK+DEA  LL+ M    V PDA      V +G L
Sbjct: 519 YKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDA------VTFGTL 572

Query: 134 IDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           IDG CK G L  A  L + +  A  +  +  TYNI IHA      +  A  LF +M  + 
Sbjct: 573 IDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           + P+   +  ++  F +    +   + L  M +   +P  + L  +++ L
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCL 682



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T+N ++  LCK+G V + ++L  ++    + PN+ TYN  I G C   + + A  +   +
Sbjct: 218 TFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCL 277

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +++G + DV+T+N ++  LCKN K  EA   L  M+  G+ PD++       Y  LI G 
Sbjct: 278 IEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY------TYNTLIAGY 331

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G ++ A  +       G +P+  TY   I  LC++ + ++A  LF +   KG+ PN 
Sbjct: 332 CKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +++ TL+     +    +  +L   M ++ ++P     +I+V+ L K
Sbjct: 392 ILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCK 438



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN  I GLC+ G +D A  +   + ++   P+V+TYN+LI+G C  +   EAE  
Sbjct: 249 PNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVY 308

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++ GL+ D  T+N ++   CK   +  A R++   +  G  PD F       Y  L
Sbjct: 309 LGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQF------TYRSL 362

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLC  G+   A  L       G+ PNV+ YN  I  L N   + +A  L  +M  KG+
Sbjct: 363 IDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGL 422

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P    F  L+    +    S    L++ M  +   P     +I++
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 41/233 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP---------------------- 49
           C+P   +YN I+  L   G+ D+A +++++M+D  I P                      
Sbjct: 107 CEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAAL 166

Query: 50  -------------NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                        NVV Y +++ GF   N   E   LF +M+  G+   + TFN ++  L
Sbjct: 167 RLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVL 226

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK   + E  +LLD +I+ GV P      N+  Y   I GLC+ G+L  A  +   L   
Sbjct: 227 CKKGDVKECEKLLDKVIKRGVLP------NLFTYNLFIQGLCQRGELDGAVRMVGCLIEQ 280

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
           G  P+V+TYN  I+ LC + +  +A      M  +G+ P+   + TL+  + +
Sbjct: 281 GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCK 333



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 7/188 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  T+N +++ LC+   +D+A  L  +MK++++NP+ VT+ +LI GFC   D + A 
Sbjct: 527 CAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAY 586

Query: 72  YLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            LF +M +   + S   T+N+I+    +   +  A +L   M+   + PD +       Y
Sbjct: 587 TLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY------TY 640

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++DG CK G +    +    +   G +P++ T    I+ LC ++++ +A  +   M  
Sbjct: 641 RLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQ 700

Query: 191 KGVAPNCV 198
           KG+ P  V
Sbjct: 701 KGLVPEAV 708



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 41/238 (17%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           ++G V +A  +F +M   +  P V +YN+++     +   ++A  +++ M DRG+  DV 
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVY 147

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG----------- 136
           +F + M   CK  +   A RLL+ M   G      CE+N+VAY  ++ G           
Sbjct: 148 SFTIRMKSFCKTSRPHAALRLLNNMSSQG------CEMNVVAYCTVVGGFYEENFKAEGY 201

Query: 137 ------------------------LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
                                   LCK G +K   +L   + + G++PN+ TYN+ I  L
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGL 261

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           C   ++D A  +   +  +G  P+ + +  L+    + ++  +    L  M    + P
Sbjct: 262 CQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEP 319


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 117/221 (52%), Gaps = 8/221 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GV+   N  +Y T+I+GLCK   VD+A  LF +M+   I PNVVTYNSLI G       +
Sbjct: 345 GVIA--NVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKIS 402

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
               L  EM DRG   +++T+N I+D LCKN  +D+A  LL  +   G+RPD +      
Sbjct: 403 CVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMY------ 456

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI GLC+ GKL++A+++ + L   G   +V TY + I   C     D A  L   M
Sbjct: 457 TYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKM 516

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           E  G  PN   +  ++ S   K+E     +LLR M  R ++
Sbjct: 517 EDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGLL 557



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 129/238 (54%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G + +PN V YN IID +CK   V+ A +L+ QM  + I+P+  T NSLI+GFC      
Sbjct: 203 GKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLK 262

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  +M+   +   + TF++++D  CK  K+ EA  +L + ++  +  D      +V
Sbjct: 263 EAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILD------VV 316

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C + ++  A+++  S+   G++ NV +Y   I+ LC  + +D+A +LF +M
Sbjct: 317 TYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEM 376

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             + + PN V + +L+    +  + S V++L+  M  R   P     + I+D L KN 
Sbjct: 377 RCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNH 434



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 115/208 (55%), Gaps = 9/208 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   T++ ++D  CKEG V +AK +      ++I  +VVTYNSL+ G+C   + N+A+ +
Sbjct: 278 PRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDI 337

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  RG+ ++V ++  +++ LCK + +DEA  L + M    + P      N+V Y  L
Sbjct: 338 FDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIP------NVVTYNSL 391

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGL K+GK+    +L   +   G  PN++TYN  + ALC +  +DKA  L  +++ +G+
Sbjct: 392 IDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGI 451

Query: 194 APNCVIFTTLMPSFIRKN---ETSKVIE 218
            P+   +T L+    +     +  KV E
Sbjct: 452 RPDMYTYTVLIKGLCQSGKLEDAQKVFE 479



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 7/233 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTYN+++DG C    ++KAK++F  M    +  NV +Y ++I+G C     +EA  LF
Sbjct: 314 DVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLF 373

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  R +  +VVT+N ++D L K  K+    +L+D M   G  P      NI+ Y  ++
Sbjct: 374 EEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPP------NIITYNSIL 427

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D LCK   +  A  L  +L   G+ P++ TY + I  LC   +++ A  +F D+ VKG  
Sbjct: 428 DALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYN 487

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNE 246
            +   +T ++  F  K      + LL  M+    +P A    I++  L  K+E
Sbjct: 488 LDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDE 540



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N I+  L K      A  L  QM+   I  +  T+N LI+ F      + +  +
Sbjct: 68  PPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSV 127

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +++ +G   + +TFN ++  LC    + +A    D ++  G   D       V+YG L
Sbjct: 128 FGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQ------VSYGTL 181

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+G++  A +L + +    + PN V YN+ I  +C  + ++ A DL+  M  K +
Sbjct: 182 INGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRI 241

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+     +L+  F    +  + + LL  M   N+ P     SI+VD   K
Sbjct: 242 SPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCK 292



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 117/241 (48%), Gaps = 10/241 (4%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           FG + K    PN +T+NT+I GLC +G + +A     ++  +  + + V+Y +LI+G C 
Sbjct: 128 FGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCK 187

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
                 A  L   +  + +Q + V +N+I+D +CK + +++A  L   M+   + PD F 
Sbjct: 188 VGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDF- 246

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                    LI G C +G+LK A  L   +    + P + T++I + A C + ++ +A  
Sbjct: 247 -----TCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKM 301

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +      K +  + V + +LM  +    E +K  ++  SM  R V+      + +++ L 
Sbjct: 302 MLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLC 361

Query: 244 K 244
           K
Sbjct: 362 K 362



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           ++ FN I+  L K +    A  L   M   G+  D F       +  LI+   ++G    
Sbjct: 70  IIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFF------TFNILINCFSQLGLNSL 123

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           +  +   + + G  PN +T+N  I  LC    + +A +    +  +G   + V + TL+ 
Sbjct: 124 SFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLIN 183

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
              +    +  ++LL+ +D + V P A + ++I+D + K ++
Sbjct: 184 GLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKL 225


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 115/215 (53%), Gaps = 6/215 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            C P  VTY  +++ LCK G +++A+ELF  M      PN V Y SLIHGF  +    EA
Sbjct: 290 ACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEA 349

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF EM++ G + DV+T  V++D LCK+   ++A +  + M++GG +P      N+V Y
Sbjct: 350 CSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKP------NVVTY 403

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I GL KIG++ NA  + + +   G  P+ VTY   +   C   ++D+A  L  +++ 
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
              +PN  ++++L+          K ++ L    K
Sbjct: 464 CSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSK 498



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 7/236 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  +  GLCK G VD+A ++  +      N +VV Y +L  G CY    + A  L
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSL 635

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G   D   +  I++ L K +K+++A +  D MI  G +P       +  Y  L
Sbjct: 636 FQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKP------TVATYTAL 689

Query: 134 IDGLCKIGKLKNARELSQS-LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +  LC  G +  A    +S L R  L+ +V+ Y+  IH  C   ++D A  LF DM  +G
Sbjct: 690 VQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRG 749

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             P  V   +L    +R  +T K  ELL+ M      P+A+  + I+D L K++ S
Sbjct: 750 NVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDES 805



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 11/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEA 70
           CKP+  T+  ++D LCK G  +KA E+F +M     + P+   + +++     A    EA
Sbjct: 185 CKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEA 244

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F +M   G   D + +N ++D L K     EA ++LD M+     P        V Y
Sbjct: 245 REVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTE------VTY 298

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           G L++ LCK G L+ A EL + +  +G  PN V Y   IH      +M +A  LF +M  
Sbjct: 299 GILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVE 358

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASIL 235
            G  P+ +  T ++    +     +      E++R   K NV+ Y +I+
Sbjct: 359 AGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTII 407



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 7/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT ++N +I    +    D A   F  MK +   P++ T+  L+   C A    +A  +
Sbjct: 152 PNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEV 211

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F EMM  G +  D      ++  L K +++ EA  +   M + G  PDA      +AY  
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDA------IAYNT 265

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGL K G  + A ++  ++     +P  VTY I +++LC    +++A +LF  M   G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             PN VI+T+L+  F +     +   L   M +    P     ++++D L K+
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKS 378



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 93/196 (47%), Gaps = 7/196 (3%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           +V TYN L++      + ++   +  EM+  G+  +  +FN+++    + R+ D+A    
Sbjct: 118 DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-PNVVTYNIT 168
           ++M +   +PD      +  +  L+D LCK G  + A E+   +   G + P+   +   
Sbjct: 178 EIMKRKRCKPD------LHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           +  L   +++ +A ++F  ME  G  P+ + + T++    +     + +++L +M  +  
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291

Query: 229 MPYASILSIIVDLLVK 244
           +P      I+V+ L K
Sbjct: 292 VPTEVTYGILVNSLCK 307



 Score = 43.9 bits (102), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 44/102 (43%)

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           +AG   +V TYN  ++ L  ++   + + +  +M   G+APN   F  L+ SF R     
Sbjct: 112 QAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRAD 171

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
             +     M ++   P      I+VD L K  +   +   F+
Sbjct: 172 DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFH 213



 Score = 40.4 bits (93), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
           Q G + D F       Y CL++ L           + + + +AG+ PN  ++NI I +  
Sbjct: 112 QAGFQHDVF------TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFA 165

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              + D A   F  M+ K   P+   F  L+    +     K  E+   M     +P
Sbjct: 166 RTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVP 222


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 14/221 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYNT++DGLC++G ++ A++L ++M +E I P++VTY  L++G C     + A+  
Sbjct: 407 PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEF 466

Query: 74  FIEMMDRGLQSDVVTFNV-IMDELCKNRKMDEATRLLDL---MIQGGVRPDAFCEINIVA 129
           F EM+  GL+ D   +   I+ EL    K+ + +R   L   M+  G  PD      ++ 
Sbjct: 467 FDEMLHEGLELDSYAYATRIVGEL----KLGDTSRAFSLQEEMLAKGFPPD------LII 516

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++DGLCK+G L+ A EL Q +   G++P+ VTY   IHA   + ++ K  ++F +M 
Sbjct: 517 YNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEML 576

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            KG+ P+ V +T L+     K    +       M ++ ++P
Sbjct: 577 SKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILP 617



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 106/195 (54%), Gaps = 10/195 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +I+GL K+G  ++AK L  +M    +  +  TYN LI+G  Y N G  AE
Sbjct: 265 CAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYG--YFNKGMLAE 322

Query: 72  YLFI--EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            L +  EM+ +G    V T+N  +  LCK  +M +A + L  M+   + PD      +V+
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPD------VVS 376

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI G C++G L  A  L   L    L P +VTYN  +  LC   +++ A  L ++M 
Sbjct: 377 YNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMI 436

Query: 190 VKGVAPNCVIFTTLM 204
            +G+AP+ V +T L+
Sbjct: 437 NEGIAPDIVTYTILV 451



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 8/234 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EFG+  KP  VTYNT++D  CK G V +  +L  +M+     PN VTYN LI+G     +
Sbjct: 227 EFGI--KPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGE 284

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A+ L  EM+  GL+    T+N ++        + EA  L + M+  G  P       
Sbjct: 285 FEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASP------T 338

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y   I GLCK+G++ +A +    +    L+P+VV+YN  I+  C    + KA  LF 
Sbjct: 339 VATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFD 398

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           ++    + P  V + TL+    R+ E     +L   M    + P     +I+V+
Sbjct: 399 ELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 41/263 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
             P   TYN+ I GLCK G +  A +    M   N+ P+VV+YN+LI+G+C   +  +A 
Sbjct: 335 ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAF 394

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF E+    L   +VT+N ++D LC+  +++ A +L   MI  G+ PD      IV Y 
Sbjct: 395 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPD------IVTYT 448

Query: 132 CLIDGLCKIGKLKNARE-----------------------------------LSQSLTRA 156
            L++G CK+G L  A+E                                   L + +   
Sbjct: 449 ILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAK 508

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+++ YN+ +  LC    +++A +L   M   GV P+ V +T+++ + +      K 
Sbjct: 509 GFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKG 568

Query: 217 IELLRSMDKRNVMPYASILSIIV 239
            E+   M  + + P     ++++
Sbjct: 569 REIFYEMLSKGLTPSVVTYTVLI 591



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + YN ++DGLCK G +++A EL  +M  + + P+ VTY S+IH         +   +
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREI 571

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +GL   VVT+ V++       +++ A      M + G+ P      N++ Y  L
Sbjct: 572 FYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILP------NVITYNSL 625

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+ ++  A      +   G+ PN  +Y I I+  CN     +A  L+  M  +GV
Sbjct: 626 INGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGV 685

Query: 194 APNCVIFTTLM 204
            P+    + L+
Sbjct: 686 QPDSCTHSALL 696



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 10/183 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GV+  P+ VTY +II    + G + K +E+F +M  + + P+VVTY  LIHG        
Sbjct: 544 GVI--PDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLE 601

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A   F EM ++G+  +V+T+N +++ LCK R+MD+A      M++ G+ P+ +      
Sbjct: 602 RAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKY------ 655

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL--FL 186
           +Y  LI+  C +G  + A  L + +   G+ P+  T++  +  L  D ++     L   L
Sbjct: 656 SYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQLESLL 715

Query: 187 DME 189
           D E
Sbjct: 716 DSE 718



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N I+  L  +  + KA E++  M +  I P +VTYN+L+  +C      +   L
Sbjct: 197 PDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDL 256

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG   + VT+NV+++ L K  + ++A  L+  M++ G++  A+       Y  L
Sbjct: 257 LSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAY------TYNPL 310

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G    G L  A  L + +   G  P V TYN  I+ LC   +M  A     DM    +
Sbjct: 311 IYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNL 370

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+ V + TL+  + R     K   L   +    + P     + ++D L + 
Sbjct: 371 LPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQ 422


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 134/269 (49%), Gaps = 43/269 (15%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF----- 61
           EFG+   PN V Y T+IDG CK G V  AK LF +M    + PN  TY+ L++GF     
Sbjct: 186 EFGL--SPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGL 243

Query: 62  ------------------------C----YANDG--NEAEYLFIEMMDRGLQSDVVTFNV 91
                                   C    Y NDG  ++A  +F EM ++G+   V+T+N+
Sbjct: 244 QREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNI 303

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++  LC+ +K  EA +L+  + + G+ P      NIV Y  LI+G C +GK+  A  L  
Sbjct: 304 LIGGLCRGKKFGEAVKLVHKVNKVGLSP------NIVTYNILINGFCDVGKMDTAVRLFN 357

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            L  +GL P +VTYN  I      E +  A DL  +ME + +A + V +T L+ +F R N
Sbjct: 358 QLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLN 417

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVD 240
            T K  E+   M+K  ++P     S+++ 
Sbjct: 418 YTDKACEMHSLMEKSGLVPDVYTYSVLIH 446



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 128/273 (46%), Gaps = 32/273 (11%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N NR  G+V  PN   YN +I   C +G VDKA ++F +M+++ I   V+TYN LI G C
Sbjct: 253 NMNRS-GIV--PNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC 309

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 EA  L  ++   GL  ++VT+N++++  C   KMD A RL + +   G+ P   
Sbjct: 310 RGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLV 369

Query: 123 CEINIVA-----------------------------YGCLIDGLCKIGKLKNARELSQSL 153
               ++A                             Y  LID   ++     A E+   +
Sbjct: 370 TYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLM 429

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
            ++GL+P+V TY++ IH  C +  M +A   F  +    + PN VI+ T++  + ++  +
Sbjct: 430 EKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSS 489

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            + + LL  M    ++P  +     + LL ++E
Sbjct: 490 YRALRLLNEMVHSGMVPNVASFCSTMGLLCRDE 522



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN +I+G C  G +D A  LF Q+K   ++P +VTYN+LI G+    +   A  L
Sbjct: 331 PNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDL 390

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +R +    VT+ +++D   +    D+A  +  LM + G+ PD +       Y  L
Sbjct: 391 VKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVY------TYSVL 444

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C  G +K A +  +SL    L PN V YN  IH  C +    +A  L  +M   G+
Sbjct: 445 IHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGM 504

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            PN   F + M    R  +  +   LL  M    + P  S+  ++
Sbjct: 505 VPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P + T+N ++  L +  + DKA  +F  +K + +  N  ++  +I G C A        L
Sbjct: 122 PLSNTFNNLLCLLIRSNYFDKAWWIFNVLKSKVV-LNAYSFGIMITGCCEAGYFVRVFRL 180

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              + + GL  +VV +  ++D  CKN  +  A  L   M + G+ P+         Y  L
Sbjct: 181 LAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQH------TYSVL 234

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G  K G  +   ++ +++ R+G++PN   YN  I   CND  +DKA  +F +M  KG+
Sbjct: 235 MNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGI 294

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A   + +  L+    R  +  + ++L+  ++K  + P     +I+++
Sbjct: 295 ACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILIN 341



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTY  +ID   +  + DKA E+   M+   + P+V TY+ LIHG C   +  EA   F  
Sbjct: 404 VTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKS 463

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           + +  LQ + V +N ++   CK      A RLL+ M+  G+ P      N+ ++   +  
Sbjct: 464 LGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVP------NVASFCSTMGL 517

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           LC+  K K A  L   +  +GL P+V  Y + +H +  D
Sbjct: 518 LCRDEKWKEAELLLGQMINSGLKPSVSLYKM-VHKVKGD 555



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN+V YNT+I G CKEG   +A  L  +M    + PNV ++ S +   C      EAE 
Sbjct: 470 QPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAEL 529

Query: 73  LFIEMMDRGLQSDVVTFNVI 92
           L  +M++ GL+  V  + ++
Sbjct: 530 LLGQMINSGLKPSVSLYKMV 549


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 116/218 (53%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY  ++DGLCK   V  A++L   M  +   PN + Y++LI GFC A   +EA+ 
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M++RG   +V T++ ++D L K++++D   ++L  M++    P      NIV Y  
Sbjct: 702 VFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAP------NIVIYTE 755

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGL K+ K   A +L   +   G  PNVVTY   I       ++DK  +LF +M  KG
Sbjct: 756 MIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            APN V +T L+          +   LL  M K+   P
Sbjct: 816 CAPNFVTYTVLINHCCATGHLDEAYALLEEM-KQTYWP 852



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 22/245 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENI---------------NPNVVTYN 55
           C PN +TY  +IDG CK G ++KA +++ +M+ D +I                PNVVTY 
Sbjct: 590 CFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYG 649

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           +L+ G C A+   +A  L   M   G + + + ++ ++D  CK  K+DEA  +   M++ 
Sbjct: 650 ALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVER 709

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G  P      N+  Y  LID L K  +L    ++   +      PN+V Y   I  L   
Sbjct: 710 GYNP------NVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKV 763

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            + D+A+ L L ME KG  PN V +T ++  F +  +  K +EL R M  +   P     
Sbjct: 764 AKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTY 823

Query: 236 SIIVD 240
           +++++
Sbjct: 824 TVLIN 828



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 126/246 (51%), Gaps = 12/246 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+  TY  +ID   K G + +A     +M  +   P VVTY +LIH +  A   +
Sbjct: 519 GVV--PDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVS 576

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--FCEI- 125
            A  LF  M+ +G   +V+T+  ++D  CK+  +++A ++   M      PD   + +I 
Sbjct: 577 VANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIK 636

Query: 126 -------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
                  N+V YG L+DGLCK  K+K+AR+L +++   G  PN + Y+  I   C   ++
Sbjct: 637 NNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKL 696

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           D+A ++F  M  +G  PN   +++L+    +      V+++L  M + +  P   I + +
Sbjct: 697 DEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEM 756

Query: 239 VDLLVK 244
           +D L K
Sbjct: 757 IDGLSK 762



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 110/241 (45%), Gaps = 29/241 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  +IDGL K    D+A +L L M+++   PNVVTY ++I GF  A   ++  
Sbjct: 746 CAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCL 805

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ--GGVRPDAFCEI---- 125
            LF EM  +G   + VT+ V+++  C    +DEA  LL+ M Q        ++C++    
Sbjct: 806 ELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGY 865

Query: 126 ---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                 I+ Y  LID   K G+L+ A EL + +  A +      
Sbjct: 866 KREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKK 925

Query: 165 --YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
             Y   I++     ++D A +LF DM   GV P+   F  L+   IR     + ++L  S
Sbjct: 926 NLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDS 985

Query: 223 M 223
           +
Sbjct: 986 L 986



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 107/266 (40%), Gaps = 45/266 (16%)

Query: 26  LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD 85
           LC  G  +KA ++  +M      P+  TY+ +I   C A+    A +LF EM   G+  D
Sbjct: 464 LCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPD 523

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------------------- 122
           V T+ +++D   K   + +A   LD M++ G  P                          
Sbjct: 524 VYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFE 583

Query: 123 ------CEINIVAYGCLIDGLCKIGKLKNARELSQSL----------------TRAGLMP 160
                 C  N++ Y  LIDG CK G ++ A ++   +                      P
Sbjct: 584 LMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKP 643

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           NVVTY   +  LC   ++  A DL   M V G  PN +++  L+  F +  +  +  E+ 
Sbjct: 644 NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVF 703

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNE 246
             M +R   P     S ++D L K++
Sbjct: 704 HKMVERGYNPNVYTYSSLIDRLFKDK 729



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +I   C+ G  + A E   ++KD    P  +TYN+L+  F  A+  + A+ +  EM +
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSE 269

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            GL  D  T       LCK  K  EA   L L+ +    P      N + Y  +I GLC+
Sbjct: 270 LGLSMDEFTLGFFAQALCKVGKWREA---LSLIEKEDFVP------NTILYNKMISGLCE 320

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A +    +     +PNV TY I +    N +Q+ +   +   M  +G  P+  I
Sbjct: 321 ASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTI 380

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           F +L+ ++ + ++ S   +LL+ M+K    P   + +I++
Sbjct: 381 FNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 51/267 (19%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY------------------- 54
           PNT+ YN +I GLC+  F ++A +   +M+  +  PNV TY                   
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365

Query: 55  ----------------NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                           NSL+H +C ++D + A  L  +M     +   V +N+++  +C 
Sbjct: 366 LSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICS 425

Query: 99  NRKM------DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
             ++      + A +  + M+  G       ++N+V++      LC  GK + A ++   
Sbjct: 426 GGELPGPVTFELAEKAYNEMLSAGT---VLNKVNVVSFA---RCLCGFGKFEKAYKVIHE 479

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF----I 208
           +   G +P+  TY+  I  LCN  +++ A  LF +M+  GV P+   +T L+  F    I
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGI 539

Query: 209 RKNETSKVIELLRSMDKRNVMPYASIL 235
            K   + + E++R   +  V+ Y +++
Sbjct: 540 IKQAHNWLDEMVRDGCEPTVVTYTTLI 566



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 107/295 (36%), Gaps = 52/295 (17%)

Query: 6   REFGVVCKPNTVTYNTIID---------------------GLCKEGF-----------VD 33
           ++FG   KP  +TYN ++                      GL  + F           V 
Sbjct: 233 KDFGY--KPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVG 290

Query: 34  KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           K +E    ++ E+  PN + YN +I G C A+   EA      M       +V T+ +++
Sbjct: 291 KWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL 350

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
                 +++    R+L +MI  G  P      +   +  L+   CK      A +L + +
Sbjct: 351 CGCLNKKQLGRCKRILSMMIAEGCYP------SYTIFNSLVHAYCKSDDFSYAYKLLKKM 404

Query: 154 TRAGLMPNVVTYNITIHALCND---------EQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
            +    P  V YNI I ++C+          E  +KA++  L         N V F   +
Sbjct: 405 EKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCL 464

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
             F +  +  KVI     M     +P  S  S ++  L       N+   F   K
Sbjct: 465 CGFGKFEKAYKVI---HEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMK 516



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT--YNSLIHGFCYANDGNEAE 71
           P  + Y  +ID   K G ++ A EL  ++   +++       Y SLI+ F YA+  + A 
Sbjct: 886 PTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAF 945

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            LF +M+  G+  D+ TF  ++  L + R+ +EA +L D + Q
Sbjct: 946 ELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQ 988


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   Y +II+  CK G + +A  LF +M +  + PN  TY +LI+G C A +   AE 
Sbjct: 290 EPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEM 349

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M  +G+  + V FN +MD  CK   +DEA RL ++M Q G   DAF   NI+A   
Sbjct: 350 MVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFT-CNIIA--- 405

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
              G C+  + + A+ L  ++   G+ PNVV+++I I   C ++   +A  LF  ME KG
Sbjct: 406 --SGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKG 463

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            AP+ V +   +  + +K +  +  +L+  M +R +MP     + ++D
Sbjct: 464 KAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLID 511



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V +NT++DG CK+G +D+A  L   M+ +    +  T N +  GFC +N   EA+ L 
Sbjct: 362 NRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLL 421

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           + M +RG+  +VV+F++++D  CK +   EA RL  +M + G  P      ++V Y   I
Sbjct: 422 LTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAP------SVVTYNAFI 475

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +  CK GK++ A +L   +   GLMP+  TY   I        +D+A +LF +M   G+ 
Sbjct: 476 ERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLN 535

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            N V +T ++    +     +  +L   M+K  ++P   I S ++  L K
Sbjct: 536 RNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 585



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 41/264 (15%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++  ++DGLCK+G V +AK L  ++  +   P+V+TYN+L++G+    D      +   M
Sbjct: 190 SWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLM 249

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
               +  +V T+ ++++   ++ K++EA +L D M++ G+ PD +       Y  +I+  
Sbjct: 250 EKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYI------YTSIINWN 303

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G +K A  L   +T   L+PN  TY   I+  C   +M  A  +  DM+ KGV  N 
Sbjct: 304 CKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNR 363

Query: 198 VIFTTLM-----------------------------------PSFIRKNETSKVIELLRS 222
           VIF TLM                                     F R N   +   LL +
Sbjct: 364 VIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLT 423

Query: 223 MDKRNVMPYASILSIIVDLLVKNE 246
           M++R V P     SI++D+  K +
Sbjct: 424 MEERGVAPNVVSFSILIDIYCKEQ 447



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V+++ +ID  CKE    +A+ LF  M+ +   P+VVTYN+ I  +C      EA  L
Sbjct: 431 PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKL 490

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +RGL  D  T+  ++D    +  +D A  L + M Q G+        N+V Y  +
Sbjct: 491 INEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNR------NVVTYTVI 544

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
           I GL K G+   A +L   + + G++P+   Y+  I +L
Sbjct: 545 ISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASL 583



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 10/152 (6%)

Query: 1   MANGNREFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS 56
            A   R F V+ K    P+ VTYN  I+  CK+G +++A +L  +M++  + P+  TY S
Sbjct: 449 FAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTS 508

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           LI G   + + + A  LF EM   GL  +VVT+ VI+  L K+ + DEA +L D M + G
Sbjct: 509 LIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEG 568

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           + PD         Y  LI  L K+G L +  E
Sbjct: 569 IVPDDGI------YSSLIASLHKVGPLVSGLE 594



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           L ++  M+     L  M+  G+      EI + ++  ++DGLCK G++  A+ L   L  
Sbjct: 163 LKRSGNMELCVEFLRQMVDSGI------EIRVCSWTAVVDGLCKKGEVVRAKALMDELVC 216

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G  P+V+TYN  ++     + +   +++   ME   V  N   +T L+  + R ++  +
Sbjct: 217 KGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEE 276

Query: 216 VIELLRSMDKRNVMPYASILSIIVDL 241
             +L   M K+ + P   I + I++ 
Sbjct: 277 AEKLFDEMLKKGIEPDVYIYTSIINW 302


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   Y +II+  CK G + +A  LF +M +  + PN  TY +LI+G C A +   AE 
Sbjct: 294 EPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEM 353

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M  +G+  + V FN +MD  CK   +DEA RL ++M Q G   DAF   NI+A   
Sbjct: 354 MVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFT-CNIIA--- 409

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
              G C+  + + A+ L  ++   G+ PNVV+++I I   C ++   +A  LF  ME KG
Sbjct: 410 --SGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKG 467

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            AP+ V +   +  + +K +  +  +L+  M +R +MP     + ++D
Sbjct: 468 KAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLID 515



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V +NT++DG CK+G +D+A  L   M+ +    +  T N +  GFC +N   EA+ L 
Sbjct: 366 NRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLL 425

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           + M +RG+  +VV+F++++D  CK +   EA RL  +M + G  P      ++V Y   I
Sbjct: 426 LTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAP------SVVTYNAFI 479

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +  CK GK++ A +L   +   GLMP+  TY   I        +D+A +LF +M   G+ 
Sbjct: 480 ERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLN 539

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            N V +T ++    +     +  +L   M+K  ++P   I S ++  L K
Sbjct: 540 RNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 589



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 41/264 (15%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++  ++DGLCK+G V +AK L  ++  +   P+V+TYN+L++G+    D      +   M
Sbjct: 194 SWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLM 253

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
               +  +V T+ ++++   ++ K++EA +L D M++ G+ PD +       Y  +I+  
Sbjct: 254 EKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYI------YTSIINWN 307

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G +K A  L   +T   L+PN  TY   I+  C   +M  A  +  DM+ KGV  N 
Sbjct: 308 CKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNR 367

Query: 198 VIFTTLM-----------------------------------PSFIRKNETSKVIELLRS 222
           VIF TLM                                     F R N   +   LL +
Sbjct: 368 VIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLT 427

Query: 223 MDKRNVMPYASILSIIVDLLVKNE 246
           M++R V P     SI++D+  K +
Sbjct: 428 MEERGVAPNVVSFSILIDIYCKEQ 451



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V+++ +ID  CKE    +A+ LF  M+ +   P+VVTYN+ I  +C      EA  L
Sbjct: 435 PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKL 494

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +RGL  D  T+  ++D    +  +D A  L + M Q G+        N+V Y  +
Sbjct: 495 INEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNR------NVVTYTVI 548

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
           I GL K G+   A +L   + + G++P+   Y+  I +L
Sbjct: 549 ISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASL 587



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 10/152 (6%)

Query: 1   MANGNREFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS 56
            A   R F V+ K    P+ VTYN  I+  CK+G +++A +L  +M++  + P+  TY S
Sbjct: 453 FAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTS 512

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           LI G   + + + A  LF EM   GL  +VVT+ VI+  L K+ + DEA +L D M + G
Sbjct: 513 LIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEG 572

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           + PD         Y  LI  L K+G L +  E
Sbjct: 573 IVPDDGI------YSSLIASLHKVGPLVSGLE 598



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           L ++  M+     L  M+  G+      EI + ++  ++DGLCK G++  A+ L   L  
Sbjct: 167 LKRSGNMELCVEFLRQMVDSGI------EIRVCSWTAVVDGLCKKGEVVRAKALMDELVC 220

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G  P+V+TYN  ++     + +   +++   ME   V  N   +T L+  + R ++  +
Sbjct: 221 KGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEE 280

Query: 216 VIELLRSMDKRNVMPYASILSIIVDL 241
             +L   M K+ + P   I + I++ 
Sbjct: 281 AEKLFDEMLKKGIEPDVYIYTSIINW 306


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 128/250 (51%), Gaps = 7/250 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +P+ VTY+T+I   C+ G +  A E F QM    + PN V Y+SLIHGFC   D  
Sbjct: 467 GQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLV 526

Query: 69  EAEYLFIEMMDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +A+ L  EMM +G+ + ++V F+ I+  LC   ++ +A  + +L+I  G RP       I
Sbjct: 527 KAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRP------TI 580

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V +  LIDG C +GK++ A  +  ++   G+ P+VVTYN  +   C   ++D    LF +
Sbjct: 581 VTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFRE 640

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M  K V P  V ++ ++        TS   ++   M             I++  L +N++
Sbjct: 641 MLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDL 700

Query: 248 SLNSIPQFNR 257
           +  +I  F++
Sbjct: 701 TDEAITLFHK 710



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN--INPNVVTYNSLIHGFCYANDGNE 69
           C PN ++YNT+I  LC +    +A ++  +M  E    +P+VV++N++IHGF    + ++
Sbjct: 223 CVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSK 282

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  EM+ +G++ DVVT+N I+D LCK R MD+A  +L  M+  GV PD       + 
Sbjct: 283 ACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDG------LT 336

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I G    G  K + ++ + +T  GL+P +VT+N  + +LC   +   A ++F  M 
Sbjct: 337 YTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMT 396

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            KG  P+ V ++ L+  +  +   + +  L  SM  + ++      +I++    K
Sbjct: 397 TKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAK 451



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 113/211 (53%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN+I+D LCK   +DKA+ +  QM D+ + P+ +TY ++IHG+  +    E+  
Sbjct: 296 EPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAK 355

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M  +GL   +VTFN  M  LCK+ +  +A  +   M   G  PD      +V+Y  
Sbjct: 356 MFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPD------LVSYSI 409

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G    G+  +   L  S+   G++ N   +NI I A      MD+A  +F +M+ +G
Sbjct: 410 LLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQG 469

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           V P+ V ++TL+ +F R    +  +E    M
Sbjct: 470 VRPDVVTYSTLISAFCRMGRLADAMEKFSQM 500



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 10/232 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ V++NT+I G  K+G V KA  L  +M  + + P+VVTYNS++   C A   +
Sbjct: 257 GGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMD 316

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +AE +  +M+D+G++ D +T+  I+     +    E+ ++   M   G+ P       IV
Sbjct: 317 KAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIP------GIV 370

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +   +  LCK G+ K+A E+ Q +T  G MP++V+Y+I +H    + +    ++LF  M
Sbjct: 371 TFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSM 430

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
             KG+  NC  F  L+ +  ++    + + +   M  + V P    Y++++S
Sbjct: 431 ADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLIS 482



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYNT++ G CK G +D    LF +M  + + P  VTY+ ++ G  +A   + A+ 
Sbjct: 612 EPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKK 671

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM+D G   D+ T+ +++  LC+N   DEA  L   +  G +     C+ +I     
Sbjct: 672 MFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKL--GAMD----CKFDITILNT 725

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+ L K+ + + A +L  +++ +GL+PNV TY + IH L  +  +++A  +F  ME  G
Sbjct: 726 VINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSG 785

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            AP+  +   ++   ++K +  K    +  +D   +   AS  S+++ L 
Sbjct: 786 CAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLF 835



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 127/302 (42%), Gaps = 81/302 (26%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG------ 67
           P  VT+N+ +  LCK G    A+E+F  M  +   P++V+Y+ L+HG  YA +G      
Sbjct: 367 PGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHG--YATEGRFADMN 424

Query: 68  -------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                                          +EA  +F EM  +G++ DVVT++ ++   
Sbjct: 425 NLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAF 484

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C+  ++ +A      MI  G+ P      N V Y  LI G C  G L  A+EL   +   
Sbjct: 485 CRMGRLADAMEKFSQMISIGLEP------NTVVYHSLIHGFCMHGDLVKAKELVSEMMSK 538

Query: 157 GL-MPNVVTYNITIHALCNDEQMDKAHDLF------------------------------ 185
           G+  PN+V ++  IH+LCN+ ++  AHD+F                              
Sbjct: 539 GIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEK 598

Query: 186 ----LDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
               LD  V  G+ P+ V + TL+  + +  +    + L R M  + V P     SI++D
Sbjct: 599 AFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLD 658

Query: 241 LL 242
            L
Sbjct: 659 GL 660



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 41/267 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V +++II  LC EG V  A ++F  +      P +VT+NSLI G+C      +A  
Sbjct: 542 RPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFG 601

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+  G++ DVVT+N ++   CK+ K+D+   L   M+   V+P        V Y  
Sbjct: 602 VLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKP------TTVTYSI 655

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD------------- 179
           ++DGL   G+   A+++   +  +G   ++ TY I +  LC ++  D             
Sbjct: 656 VLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMD 715

Query: 180 ----------------------KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
                                 +A+DLF  +   G+ PN   +  ++ + +++    +  
Sbjct: 716 CKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEAD 775

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
            +  SM+K    P + +L+ I+ +L++
Sbjct: 776 TMFSSMEKSGCAPSSRLLNDIIRMLLQ 802



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFL-QMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           +  T+  NT +  LC     D+A ++ L +M D    PN ++YN++I   C  +   EA 
Sbjct: 188 RTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEAL 247

Query: 72  YLFIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            +   M   G     DVV+FN ++    K  ++ +A  L++ M+Q GV PD      +V 
Sbjct: 248 DMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPD------VVT 301

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++D LCK   +  A  + + +   G+ P+ +TY   IH         ++  +F  M 
Sbjct: 302 YNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMT 361

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            KG+ P  V F + M S  +   +    E+ + M  +  MP
Sbjct: 362 SKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMP 402



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 7   EFGVVCKPNTV-TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           E G    P +V TY  ++D  C+    D     F ++    +    +  N+ +   C+A 
Sbjct: 146 EAGPRVAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAK 205

Query: 66  DGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
             +EA + L   M D G   + +++N ++  LC + +  EA  ++  M + G R    C 
Sbjct: 206 RTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGR----CS 261

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            ++V++  +I G  K G++  A  L   + + G+ P+VVTYN  + ALC    MDKA  +
Sbjct: 262 PDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELV 321

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              M  KGV P+ + +T ++  +       +  ++ R M  + ++P
Sbjct: 322 LRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIP 367



 Score = 40.0 bits (92), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CK +    NT+I+ L K    ++A +LF  +    + PNV TY  +IH         EA+
Sbjct: 716 CKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEAD 775

Query: 72  YLFIEMMDRG 81
            +F  M   G
Sbjct: 776 TMFSSMEKSG 785


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 132/295 (44%), Gaps = 64/295 (21%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYN +I GL + G ++ A+  F++M+   + P+V+TYNSL++G+C A +  EA  L
Sbjct: 335 PTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLL 394

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL------------------------- 108
           F ++   GL   V+T+N+++D  C+   ++EA RL                         
Sbjct: 395 FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHN 454

Query: 109 ----------LDLMIQGGVRPDAFC-------EINI----------------------VA 129
                      D M+  G+RPD F        EI +                      V 
Sbjct: 455 VCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVT 514

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LIDGLCK G LK+A EL   +   GL P+ +TY   IHA C    + +A   F DM 
Sbjct: 515 YNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMI 574

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             G+ P+ V +T ++ ++ R+          R M +  V P     ++++  L +
Sbjct: 575 SDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCR 629



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K ++ TYN +I GL   GFV K  +L L+M++E I P VVTYN++IHG   +     A+ 
Sbjct: 299 KASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQA 358

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F+EM   GL  DV+T+N +++  CK     EA  L   + + G+ P       ++ Y  
Sbjct: 359 KFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAP------TVLTYNI 412

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C++G L+ AR L + +   G +P+V TY I +    N   +    + F +M  KG
Sbjct: 413 LIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKG 472

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+C  + T + + I   + SK  +L   +    +       +I++D L K 
Sbjct: 473 LRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKT 525



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 117/262 (44%), Gaps = 41/262 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYN +IDG C+ G +++A+ L  +M ++   P+V TY  L+ G             
Sbjct: 405 PTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREF 464

Query: 74  FIEMMDRGLQ-----------------------------------SDVVTFNVIMDELCK 98
           F EM+ +GL+                                   SD VT+N+++D LCK
Sbjct: 465 FDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCK 524

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              + +A  L+  MI  G++PD       + Y CLI   C+ G L+ AR+    +   GL
Sbjct: 525 TGNLKDAEELMMQMISNGLQPDC------ITYTCLIHAHCERGFLREARKFFNDMISDGL 578

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+ VTY + IHA C    +  A+  F  M  +GV PN + +  L+ +  R   T     
Sbjct: 579 PPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYR 638

Query: 219 LLRSMDKRNVMPYASILSIIVD 240
               M +R ++P     ++++D
Sbjct: 639 HFYEMLERGLVPNKYTYTLLID 660



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 42/228 (18%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFC-------- 62
           +P+ VTYNT++D   KEG  DK   L  +M+    +  PN VTYN +I G          
Sbjct: 228 EPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEA 287

Query: 63  --------YANDGNEAEY------------------LFIEMMDRGLQSDVVTFNVIMDEL 96
                    +   +   Y                  L +EM + G+   VVT+N ++  L
Sbjct: 288 AELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGL 347

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            ++ +++ A      M   G+ PD      ++ Y  L++G CK G  K A  L   L RA
Sbjct: 348 LQSGQIEAAQAKFVEMRAMGLLPD------VITYNSLLNGYCKAGNQKEALLLFGDLRRA 401

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
           GL P V+TYNI I   C    +++A  L  +M  +G  P+   +T LM
Sbjct: 402 GLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILM 449



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 11/230 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N ++  L      D    +  +M    I P++VTYN+L+  F      ++ + L
Sbjct: 194 PDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDML 253

Query: 74  FIEMMDRG---LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             EM  RG   L +D VT+NV++  L +   ++EA  L++ M +   +  +F       Y
Sbjct: 254 LKEMEARGSSCLPND-VTYNVVIAGLARKGYLEEAAELVEEM-RLSKKASSF------TY 305

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GL   G +K   +L   +   G+MP VVTYN  IH L    Q++ A   F++M  
Sbjct: 306 NPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRA 365

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ P+ + + +L+  + +     + + L   + +  + P     +I++D
Sbjct: 366 MGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILID 415



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY  +I   C+ GF+ +A++ F  M  + + P+ VTY  +IH +C   +   A  
Sbjct: 544 QPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYG 603

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M++ G++ + +T+NV++  LC+  +   A R    M++ G+ P+ +       Y  
Sbjct: 604 WFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKY------TYTL 657

Query: 133 LIDG 136
           LIDG
Sbjct: 658 LIDG 661


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 32/254 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---------- 62
           +P+   Y+ ++  LC+    +KAKE+   M+      ++V YN LIHG C          
Sbjct: 128 QPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALE 187

Query: 63  ----------------YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
                           Y    NEAE LF EM ++GL ++ +T+++++D  C+  +MD A 
Sbjct: 188 IKNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAI 247

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
             LD M +  +      E  +  Y  LI+G CK+G    A+     +   GL P VVTY 
Sbjct: 248 GFLDKMTKASI------EFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYT 301

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             I   CN+ +  KA  ++ +M  KG++PN   FT ++    R N  ++ I L   M +R
Sbjct: 302 SLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKER 361

Query: 227 NVMPYASILSIIVD 240
            +MP     +++++
Sbjct: 362 KIMPSEVTYNVMIE 375



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTY ++I G C EG   KA +++ +M  + I+PN  T+ ++I G C AN   EA  L
Sbjct: 295 PTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRL 354

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM +R +    VT+NV+++  C++  + EA  LLD M+  G  PD +       Y  L
Sbjct: 355 FGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTY------TYRPL 408

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC +G++  A+E    L +     N + Y+  +H  C + +   A      M  +GV
Sbjct: 409 ISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGV 468

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A + V +  L+    R+++T  +  LL+ M    + P A I + ++D
Sbjct: 469 AMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMID 515



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 111/216 (51%), Gaps = 7/216 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y  +ID   K G + +A  L+  M DE   PNVVTY +LI+G C A   ++AE 
Sbjct: 504 RPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAEL 563

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  E +   +  + +T+   +D L +   M++A +L   M++G +          V+Y  
Sbjct: 564 LSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFL-------ATTVSYNI 616

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C++GK++ A +L   +T   ++P+ +TY+  I+  C    + +A  L+  M  KG
Sbjct: 617 LIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKG 676

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           + P+ + ++ L+       E  K  EL   M +R +
Sbjct: 677 LKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGM 712



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 111/276 (40%), Gaps = 64/276 (23%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT T+  II GLC+   + +A  LF +MK+  I P+ VTYN +I G C + + +EA +L
Sbjct: 330 PNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHL 389

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD---------------LMIQGGVR 118
             EM+ +G   D  T+  ++  LC   ++ EA   +D                ++ G  +
Sbjct: 390 LDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCK 449

Query: 119 PDAF------CEI--------NIVAYGCLIDGLC-------------------------- 138
              F      C +        ++V Y  LIDG                            
Sbjct: 450 EGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVI 509

Query: 139 ---------KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
                    K G LK A  L   +   G +PNVVTY   I+ LC    MDKA  L  +  
Sbjct: 510 YTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETL 569

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           V  V PN + +   +    R     K ++L  +M K
Sbjct: 570 VSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK 605



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 7/187 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +I+GLCK G +DKA+ L  +    ++ PN +TY   +       +  +A 
Sbjct: 538 CLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAV 597

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M+ +G  +  V++N+++   C+  K++EAT+LL  M    + PD       + Y 
Sbjct: 598 QLHHAML-KGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPD------YITYS 650

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I   CK   L+ A +L  ++   GL P+ + Y+  +H  C   +++KA +L  +M  +
Sbjct: 651 TIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRR 710

Query: 192 GVAPNCV 198
           G+  N V
Sbjct: 711 GMRSNHV 717



 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N + Y+ ++ G CKEG    A      M +  +  ++V Y  LI G    +D      
Sbjct: 434 KLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFG 493

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM + GL+ D V +  ++D   K   + EA  L D+M+  G  P      N+V Y  
Sbjct: 494 LLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLP------NVVTYTA 547

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK G +  A  LS+    + + PN +TY   +  L     M+KA  L   M +KG
Sbjct: 548 LINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAM-LKG 606

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVD 240
                V +  L+  F R  +  +  +LL  M   +++P Y +  +II +
Sbjct: 607 FLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYE 655



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 19/198 (9%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           MKD N+ P V T ++L++G       N+   LF +++   +Q D+  ++ ++  LC+ + 
Sbjct: 87  MKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKD 146

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
            ++A  ++  M          C+++IV Y  LI GLCK  ++  A E+   L + GL  N
Sbjct: 147 FNKAKEMIHWMEFNQ------CKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEAN 200

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY           + ++A  LF +M  KG+  N + ++ L+ SF R+ E    I  L 
Sbjct: 201 VVTYY---------GKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLD 251

Query: 222 SMDKRN----VMPYASIL 235
            M K +    V PY S++
Sbjct: 252 KMTKASIEFTVYPYNSLI 269



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY+TII   CK   + +A +L+  M D+ + P+ + Y+ L+HG C A +  +A  L
Sbjct: 644 PDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFEL 703

Query: 74  FIEMMDRGLQSDVVT 88
             EM+ RG++S+ VT
Sbjct: 704 RDEMIRRGMRSNHVT 718


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 113/200 (56%), Gaps = 7/200 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C P+T TY+ +I+GLCK   + KA EL  +M   ++   +VV +N+L+ G+C A D + A
Sbjct: 188 CSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRA 247

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L   M++ G   DVVT++ I+D LC+   +D+   LL+ M+  G +PD      +V Y
Sbjct: 248 RELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPD------VVTY 301

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L+ GLCK GK+  A  L + +   G  PN VTY++    LC  +++D A+DL   +  
Sbjct: 302 TVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRD 361

Query: 191 KGVAPNCVIFTTLMPSFIRK 210
           KG   + V F TL+ S  ++
Sbjct: 362 KGRVTDVVAFETLLLSVKKR 381



 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 131/268 (48%), Gaps = 40/268 (14%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL------------- 57
            CKP+ VT+NT+I GLCK G +D+A+++  +M+      N+VTYN+L             
Sbjct: 84  ACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEA 143

Query: 58  -------------------IHGFCYANDGNEAEYLFIEMMDR--GLQSDVVTFNVIMDEL 96
                              IHGFC + + + A Y F+E M +  G   D  T++++++ L
Sbjct: 144 VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRA-YGFLEEMKQRAGCSPDTFTYSILINGL 202

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK+  + +A  LL  MI    R D  C  ++VA+  L+DG CK   L  AREL  S+   
Sbjct: 203 CKSSNLRKADELLQEMIG---RKD--CCASVVAFNTLVDGYCKAQDLDRARELLSSMLEH 257

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+VVTY+  I  LC    +DK   L   M  +G  P+ V +T L+    +  +  + 
Sbjct: 258 GCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEA 317

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
             L++ M +    P A   S++ D L K
Sbjct: 318 CRLVKRMLEDGCTPNAVTYSLVFDGLCK 345



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 9/236 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDG 67
           G+   P+T TYN II G CK G +D+A     +MK     +P+  TY+ LI+G C +++ 
Sbjct: 149 GMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNL 208

Query: 68  NEAEYLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            +A+ L  EM+ R    + VV FN ++D  CK + +D A  LL  M++ G  PD      
Sbjct: 209 RKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPD------ 262

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  +IDGLC+ G +     L + +   G  P+VVTY + +  LC   +M +A  L  
Sbjct: 263 VVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVK 322

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM-DKRNVMPYASILSIIVDL 241
            M   G  PN V ++ +     + ++     +LL S+ DK  V    +  ++++ +
Sbjct: 323 RMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLLLSV 378



 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 130 YGCLIDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           Y  L+   C  G+L+ A +L + +  + G+ P    YN  +HALC   ++ +A ++  +M
Sbjct: 21  YFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNM 80

Query: 189 EVKGVAPNCVIFTTLMPSFI---RKNETSKVI-ELLRSMDKRNVMPYASIL 235
           +     P+ V F TL+       R +E  +V+ E+ RS    N++ Y +++
Sbjct: 81  KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLI 131


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TVTYN I+DGLCK G V +A   FL M++      VVTY++L+ GFC   + + A  LF
Sbjct: 291 STVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELF 350

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+DRG + ++V++N+I+  LC+  K+ +A    + ++Q  + PD +       +   +
Sbjct: 351 RRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVY------TFNAFL 404

Query: 135 DGLC-KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            GLC ++  + +  EL +S+   G  PN+ +Y+I +  +C    ++ A ++F +M  +GV
Sbjct: 405 HGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGV 464

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           AP+ V+F TL+          + +E+ R +++R+     S  S++
Sbjct: 465 APDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLL 509



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY +IIDGLCK G V++  E F +M++    P+ VTY +LI GF  A    +A  +
Sbjct: 220 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRV 279

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+  G     VT+N+I+D LCK  ++ EA      M + G      C   +V Y  L
Sbjct: 280 YRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERG------CVATVVTYSAL 333

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG C  G +  A EL + +   G  PN+V+YNI I  LC   ++ KA+  F  +  + +
Sbjct: 334 MDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL 393

Query: 194 APNCVIFTTLMPSFIRKNET-SKVIELLRSMDKRNVMPYASILSIIVD 240
            P+   F   +    ++ +T S  +EL  SM  +   P     SI++D
Sbjct: 394 CPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMD 441



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN  IDGLCK   VD A +L  +M ++   P  VTY +L+ G   A   +EA 
Sbjct: 38  CEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAM 97

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M+++G    + T+ V++D L K  +++EA R+   M+  G RPDAF       Y 
Sbjct: 98  AVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAF------VYT 151

Query: 132 CLIDGLCKIGKLKNA----RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            LI GLCK GK + A    +E +     A  +P+VVTY   I  LC   ++ +A  +F D
Sbjct: 152 ALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDD 211

Query: 188 MEV-KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             V +G  P+ V +T+++    +     +  E    M  R   P A   + ++D  +K +
Sbjct: 212 EAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAK 271

Query: 247 ISLNSIPQFNR 257
           +    IP+ +R
Sbjct: 272 M----IPKAHR 278



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 114/233 (48%), Gaps = 11/233 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY  +IDG  K   + KA  ++ QM       + VTYN ++ G C A    EA  
Sbjct: 254 EPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYA 313

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F+ M +RG  + VVT++ +MD  C    +  A  L   M+  G      CE N+V+Y  
Sbjct: 314 TFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG------CEPNLVSYNI 367

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD---LFLDME 189
           +I GLC+ GKL  A    + L +  L P+V T+N  +H LC  +++D   D   LF  M 
Sbjct: 368 IIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLC--QRLDTVSDGVELFESMV 425

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            +G +PN   ++ LM    R       +E+ R M  R V P   + + ++  L
Sbjct: 426 SQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWL 478



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 8/199 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C    VTY+ ++DG C EG V  A ELF +M D    PN+V+YN +I G C A    +A 
Sbjct: 323 CVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAY 382

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + F +++ R L  DV TFN  +  LC+    + +   L + M+  G  P      N+ +Y
Sbjct: 383 FYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSP------NLHSY 436

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L+DG+C+ G L+ A E+ + +   G+ P+VV +N  I  LC   ++D+A ++F ++E 
Sbjct: 437 SILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELER 496

Query: 191 KGVAPNCVIFTTLMPSFIR 209
           +  AP+   + +L+    R
Sbjct: 497 RS-APDAWSYWSLLDGLSR 514



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 13/229 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN----PNVVTYNSLIHGF 61
           R+      P+ VTY ++IDGLCK G + +A+++F    DE +     P+ VTY S+I G 
Sbjct: 176 RKHHATAVPDVVTYTSLIDGLCKAGRILEARQVF---DDEAVERGFIPDAVTYTSIIDGL 232

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           C      E    F EM +RG + D VT+  ++D   K + + +A R+   M+Q G     
Sbjct: 233 CKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGT---- 288

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
              ++ V Y  ++DGLCK G++  A     ++   G +  VVTY+  +   C++  +  A
Sbjct: 289 --VVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAA 346

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +LF  M  +G  PN V +  ++    R  + +K       + +R + P
Sbjct: 347 VELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCP 395



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D+V F V+++ LC+ +++DEA  +L+  ++ G  PD       V Y   IDGLCK  ++ 
Sbjct: 6   DMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPD------YVTYNVFIDGLCKAERVD 59

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
           +A +L + +     +P  VTY   +  L    ++D+A  +   M  KG +P    +T ++
Sbjct: 60  DAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVI 119

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               +     +   +   M      P A + + ++  L K+
Sbjct: 120 DGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKS 160



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 63/122 (51%)

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           C  ++VA+  +I+GLC+  +L  A  + +   RAG  P+ VTYN+ I  LC  E++D A 
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            L   M+ K   P  V +T L+   ++     + + +L  M ++   P     ++++D L
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 243 VK 244
            K
Sbjct: 123 SK 124


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 111/197 (56%), Gaps = 6/197 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN ++Y T+I+G CK   VD+A  L  +M ++N+ P+ VTYN L+ G   +        L
Sbjct: 349 PNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDL 408

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G  +D++T+NV++D+  K+ K D+A  L   +I+ G+ P      NI  Y  L
Sbjct: 409 VEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISP------NIRTYNIL 462

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCK G+LK A+E+ Q L+  G  PN+ TYNI IH LC +  +D+A  L   M     
Sbjct: 463 LDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNY 522

Query: 194 APNCVIFTTLMPSFIRK 210
            PN + F T++ + + K
Sbjct: 523 LPNYITFDTIVRAILVK 539



 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 118/211 (55%), Gaps = 7/211 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YNT+IDGLCK+G VD+A  L  +M +  I  +V +YNS+IHGFC       A  L
Sbjct: 208 PNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKL 267

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             EM+ RG +  DV TFN+++D LCK  ++ EA  ++ +MI+ G +PD      IV+Y  
Sbjct: 268 LDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPD------IVSYNA 321

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G C  G +  A+++   +     +PNV++Y   I+  C    +D+A  L  +M  K 
Sbjct: 322 LMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKN 381

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           + P+ V +  L+    +   +    +L+ +M
Sbjct: 382 LVPDTVTYNCLLDGLSKSGRSLYEWDLVEAM 412



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 126/234 (53%), Gaps = 7/234 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y TII+GLCK G    A ++F +MK   + PN++ YN++I G C     +EA  L  E
Sbjct: 176 VCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTE 235

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD-LMIQGGVRPDAFCEINIVAYGCLID 135
           M++ G++ DV ++N ++   C   +   A +LLD ++++G V PD +       +  LID
Sbjct: 236 MVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVY------TFNILID 289

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLCK+G++  A  +   + + G  P++V+YN  ++  C    + +A  +F  M  +   P
Sbjct: 290 GLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALP 349

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
           N + + TL+  + +     + + LL  M  +N++P     + ++D L K+  SL
Sbjct: 350 NVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSL 403



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N +IDGLCK G V +A  +   M      P++V+YN+L++G+C +    EA+ +
Sbjct: 279 PDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQV 338

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M++R    +V+++  +++  CK R +DEA  LL  M    + PD       V Y CL
Sbjct: 339 FDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDT------VTYNCL 392

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGL K G+     +L +++  +G   +++TYN+ +      E+ DKA  LF  +   G+
Sbjct: 393 LDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGI 452

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +PN   +  L+    +        E+ + +  +   P     +I++  L K
Sbjct: 453 SPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCK 503



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 42/254 (16%)

Query: 13  KPNTVTYN-----------------------------------TIIDGLCKEGFVDKAKE 37
           KP+ +T++                                   T++ GLC +G V +A  
Sbjct: 102 KPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVS 161

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           L  +  D     + V Y ++I+G C      +A  +F +M    +  +++ +N ++D LC
Sbjct: 162 LLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLC 221

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA-RELSQSLTRA 156
           K   +DEA  L   M++ G+      E+++ +Y  +I G C +G+ + A + L + + R 
Sbjct: 222 KQGLVDEACGLCTEMVENGI------ELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRG 275

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
            + P+V T+NI I  LC   ++ +A+++   M  +G  P+ V +  LM  +       + 
Sbjct: 276 KVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEA 335

Query: 217 IELLRSMDKRNVMP 230
            ++   M +R  +P
Sbjct: 336 KQVFDKMVERTALP 349



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 8/228 (3%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           +N ++  L K    +    L+  ++ +  I P+++T++ LI+ F        A  L   +
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +  G Q DV     +M  LC   ++ EA  LL   +  G R D  C      YG +I+GL
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVC------YGTIINGL 185

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CKIGK ++A ++   + +  + PN++ YN  I  LC    +D+A  L  +M   G+  + 
Sbjct: 186 CKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDV 245

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRN-VMPYASILSIIVDLLVK 244
             + +++  F         ++LL  M  R  V P     +I++D L K
Sbjct: 246 YSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCK 293



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 35/49 (71%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           C+PN  TYN +I GLCKEGF+D+A+ L  +M + N  PN +T+++++  
Sbjct: 487 CQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRA 535


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T T+NT+I  LC E  +++A +L  ++  + ++PNV T+N LI+  C   D + A 
Sbjct: 367 CLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAV 426

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM   G   D VT+N+++D LC + K+ +A  LL  M   G      C  + V Y 
Sbjct: 427 RLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSG------CPQSTVTYN 480

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGLCK  +++ A E+   +   G+  N +T+N  I  LCN E++D A +L   M  +
Sbjct: 481 TIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISE 540

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           G+ PN V + +++  + ++   SK  ++L++M       +V+ YA+++
Sbjct: 541 GLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLI 588



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN +ID LC  G + KA +L  +M+      + VTYN++I G C      EAE
Sbjct: 437 CTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAE 496

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M   G+  + +TFN ++D LC   ++D+A  L+D MI  G++P      N V Y 
Sbjct: 497 EVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQP------NNVTYN 550

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++   CK G +  A ++ Q++T  G   +VVTY   I+ LC   +   A  L   M +K
Sbjct: 551 SILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMK 610

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+ P    +  ++ S  R N     + L R M +    P A    I+
Sbjct: 611 GMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIV 657



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 10/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY+T+I+ LC  G +++AK +  QM D    P+  T+N+LI   C  N   EA 
Sbjct: 332 CEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEAL 391

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  E+  +GL  +V TFN++++ LCK      A RL + M   G  PD       V Y 
Sbjct: 392 DLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDE------VTYN 445

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID LC  GKL  A +L + +  +G   + VTYN  I  LC   ++++A ++F  M+V 
Sbjct: 446 ILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVT 505

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           G+  N + F TL+             EL+  M    + P    Y SIL+
Sbjct: 506 GIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILT 554



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC-YANDGNEAEY 72
           P+  T+ T+++G  +EG ++ A  L  +M +   +P  VT N LI+G+C     G+   Y
Sbjct: 229 PDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGY 288

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  E+ D G + D VTF+  ++ LC+N  +D A ++L LM+Q G  PD +       Y  
Sbjct: 289 IQQEIAD-GFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVY------TYST 341

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+ LC  G+L+ A+ +   +  +G +P+  T+N  I ALC + Q+++A DL  ++ VKG
Sbjct: 342 VINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKG 401

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           ++PN   F  L+ +  +  +    + L   M      P     +I++D
Sbjct: 402 LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILID 449



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 115/243 (47%), Gaps = 6/243 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            PN  T+N +I+ LCK G    A  LF +MK     P+ VTYN LI   C +    +A  
Sbjct: 403 SPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALD 462

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G     VT+N I+D LCK R+++EA  + D M   G+  +A      + +  
Sbjct: 463 LLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNA------ITFNT 516

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLC   ++ +A EL   +   GL PN VTYN  +   C    + KA D+   M   G
Sbjct: 517 LIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANG 576

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
              + V + TL+    +   T   ++LLR M  + + P     + ++  L +     +++
Sbjct: 577 FEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDAL 636

Query: 253 PQF 255
             F
Sbjct: 637 SLF 639



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT++T ++GLC+ G VD A ++   M  E   P+V TY+++I+  C   +  EA+ 
Sbjct: 298 EPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKG 357

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+D G   D  TFN ++  LC   +++EA  L   +   G+ P      N+  +  
Sbjct: 358 IVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSP------NVYTFNI 411

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+ LCK+G    A  L + +  +G  P+ VTYNI I  LC+  ++ KA DL  +MEV G
Sbjct: 412 LINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSG 471

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              + V + T++    ++    +  E+   MD   +   A   + ++D L   E
Sbjct: 472 CPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAE 525



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +TVTYNTIIDGLCK   +++A+E+F QM    I  N +T+N+LI G C A   ++A 
Sbjct: 472 CPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAA 531

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  GLQ + VT+N I+   CK   + +A  +L  M   G       E+++V Y 
Sbjct: 532 ELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGF------EVDVVTYA 585

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK  + + A +L + +   G+ P    YN  I +L        A  LF +M   
Sbjct: 586 TLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEV 645

Query: 192 GVAPNCVIFTTLMPSFIRKNETSK-VIELLRSMDKRNVMPYASILSIIVDLLV 243
           G  P+   +  +     R     K   + L  M     +P  S   ++ + L+
Sbjct: 646 GGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLL 698



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P +VT N +I+G CK G V  A     Q   +   P+ VT+++ ++G C     + A 
Sbjct: 262 CSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHAL 321

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G + DV T++ +++ LC N +++EA  +++ M+  G  PD         + 
Sbjct: 322 KVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDT------TTFN 375

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC   +L+ A +L++ LT  GL PNV T+NI I+ALC       A  LF +M+  
Sbjct: 376 TLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSS 435

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G  P+ V +  L+ +     + +K ++LL+ M+           + I+D L K
Sbjct: 436 GCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCK 488



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY T+I+GLCK      A +L   M+ + + P    YN +I      N+G +A  LF
Sbjct: 580 DVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLF 639

Query: 75  IEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            EM + G   D  T+ ++   LC+    + EA   L  M   G  P+ F    ++A G L
Sbjct: 640 REMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPE-FSSFRMLAEGLL 698

Query: 134 IDGL 137
             G+
Sbjct: 699 NLGM 702



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 7/199 (3%)

Query: 43  KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102
           +D+ + P+   Y  +I     A   +  + L  EM   G +  +      +    + +  
Sbjct: 82  RDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLF 141

Query: 103 DEATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           D+A  L+   +      D F  + N   Y  L+  L +  K+K        ++  G+ P+
Sbjct: 142 DDAFDLVSNQL------DMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPD 195

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVT+N  I ALC   Q   A  +  +M    VAP+   FTTLM  F+ +      + L  
Sbjct: 196 VVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKA 255

Query: 222 SMDKRNVMPYASILSIIVD 240
            M +    P +  ++++++
Sbjct: 256 RMSEMGCSPTSVTVNVLIN 274



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 7/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y  II  L   G  D  K L  +M+ E     +    S I  +      ++A  L
Sbjct: 88  PSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAFDL 147

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               +D  G+Q++   +N ++  L +  K+         M   G+ PD      +V +  
Sbjct: 148 VSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPD------VVTFNT 201

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LC+  + + A  + + ++   + P+  T+   +     +  ++ A  L   M   G
Sbjct: 202 VIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMG 261

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +P  V    L+  + +       +  ++        P     S  V+ L +N
Sbjct: 262 CSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQN 314



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NEAE 71
           KP    YN +I  L +      A  LF +M +    P+  TY  +  G C       EA 
Sbjct: 613 KPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAF 672

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
              +EM D G   +  +F ++ + L      D   R ++L+++
Sbjct: 673 DFLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYLIRAIELIVE 715


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 130/241 (53%), Gaps = 11/241 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN II G+CKEG V++A EL   +  +   P+V++YN L+  F      +E E L
Sbjct: 250 PDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKL 309

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG + + VT+++++  LC+  ++DEA  +L +MI+  + PD +      +Y  L
Sbjct: 310 VAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTY------SYDPL 363

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LCK G+L  A  +   +   G +P++V YN  + ALC +   ++A ++F  +   G 
Sbjct: 364 ISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGC 423

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIV-DLLVKNEIS 248
            PN   + T++ +     + S+ + ++ +M  + + P    Y S++S +  D LV+  I 
Sbjct: 424 PPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIG 483

Query: 249 L 249
           L
Sbjct: 484 L 484



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YN +I G CK   ++ A ++  +MK     P++VTYN +I   C       A  
Sbjct: 144 EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALT 203

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++       V+T+ ++++       ++EA +LL+ M+  G+ PD +       Y  
Sbjct: 204 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMY------TYNA 257

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G+CK G ++ A EL  SLT  G  P+V++YNI + A  N  + D+   L  +M  +G
Sbjct: 258 IIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 317

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             PN V ++ L+ S  R     + I +L+ M ++ + P
Sbjct: 318 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTP 355



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ ++YN ++     +G  D+ ++L  +M      PN VTY+ LI   C     +EA 
Sbjct: 283 CEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAI 342

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+++ L  D  +++ ++  LCK  ++D A  ++D MI  G  PD      IV Y 
Sbjct: 343 SVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPD------IVNYN 396

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++  LCK G    A E+   L   G  PNV +YN  I AL +     +A  +   M  K
Sbjct: 397 TILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISK 456

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P+ + + +L+    R     + I LL  M++    P     +I++  L K
Sbjct: 457 GIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCK 509



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T +Y+ +I  LCKEG +D A  +   M      P++V YN+++   C   + N+A  +
Sbjct: 355 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 414

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F ++   G   +V ++N ++  L        A  ++  MI  G+ PD       + Y  L
Sbjct: 415 FNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDE------ITYNSL 468

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LC+ G ++ A  L   + ++G  P V++YNI +  LC   ++D A  +F +M  KG 
Sbjct: 469 ISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGC 528

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            PN   +  L+         ++ +EL  S+  R+V+
Sbjct: 529 RPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVI 564



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 10/178 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V YNTI+  LCK G  ++A E+F +++     PNV +YN++I       D + A 
Sbjct: 388 CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRAL 447

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+ +G+  D +T+N ++  LC++  ++EA  LLD M Q G RP       +++Y 
Sbjct: 448 GMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRP------TVISYN 501

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL----CNDEQMDKAHDLF 185
            ++ GLCK+ ++ +A  +   +   G  PN  TY + I  +       E M+ A+ LF
Sbjct: 502 IVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLF 559



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 115/258 (44%), Gaps = 33/258 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN +I  LC    +  A  +  Q+  +N  P V+TY  LI         NEA  L
Sbjct: 180 PDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKL 239

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF-- 122
             EM+ RGL  D+ T+N I+  +CK   ++ A  L+  +   G  PD         AF  
Sbjct: 240 LEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLN 299

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             CE N V Y  LI  LC+ G++  A  + + +    L P+  +
Sbjct: 300 QGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYS 359

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL---LR 221
           Y+  I ALC + ++D A  +   M   G  P+ V + T++ +  +    ++ +E+   LR
Sbjct: 360 YDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLR 419

Query: 222 SMD-KRNVMPYASILSII 238
            M    NV  Y +++S +
Sbjct: 420 GMGCPPNVSSYNTMISAL 437



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+  G+ C PN  +YNT+I  L   G   +A  +   M  + I+P+ +TYNSLI   C  
Sbjct: 416 NKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRD 475

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA  L  +M   G +  V+++N+++  LCK R++D+A  +   MI+ G RP     
Sbjct: 476 GLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRP----- 530

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSL 153
            N   Y  LI+G+   G    A EL+ SL
Sbjct: 531 -NETTYILLIEGIGFAGWRTEAMELANSL 558



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 91/174 (52%), Gaps = 7/174 (4%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L++  C A   NE+ Y    ++++G   DV+    ++      + +++A+R+++++ +  
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL-ESH 142

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
             PD F      AY  +I G CK+ +++ A ++   +   G +P++VTYNI I +LCN  
Sbjct: 143 TEPDVF------AYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 196

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++  A  +   + +    P  + +T L+ + I +   ++ ++LL  M  R ++P
Sbjct: 197 KLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLP 250



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  ++YN ++ GLCK   +D A  +F +M ++   PN  TY  LI G  +A    EA  
Sbjct: 494 RPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEA-- 551

Query: 73  LFIEMMDRGLQSDVVT 88
             +E+ +     DV++
Sbjct: 552 --MELANSLFSRDVIS 565


>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 393

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 125/231 (54%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+ T++DGLCK+G V KA+ +   M  + + PN+VTYNSL+ G+    + N+A+ L
Sbjct: 121 PNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQL 180

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  +  RG+  +V ++ V+++ LCKN+ +DEA  L   M    + PD       VAY  L
Sbjct: 181 FNTISLRGMTPNVRSYKVMINGLCKNKMVDEAANLFKEMHSKNMVPDT------VAYNSL 234

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  ++ +  +    +   G   N++TYN  +  LC + Q+DKA  L   ++ +G+
Sbjct: 235 IDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGI 294

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN   +T L+    +        E+ + +  +     A I +++++ L K
Sbjct: 295 RPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIYTVMINGLCK 345



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 131/244 (53%), Gaps = 24/244 (9%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI----------- 58
           ++ KP+ V YNTIID LCK+  V    +L+ +M D+ I P+VVTYN+LI           
Sbjct: 33  LLVKPDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKI 92

Query: 59  ---HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
              +GF       EA  L  +M  + +  ++ TF  ++D LCK+ ++ +A  +L +MI+ 
Sbjct: 93  RKEYGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQ 152

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
            V P      NIV Y  L+DG   + ++  A++L  +++  G+ PNV +Y + I+ LC +
Sbjct: 153 RVEP------NIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKN 206

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPY 231
           + +D+A +LF +M  K + P+ V + +L+    +      V + +  M  R    N++ Y
Sbjct: 207 KMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITY 266

Query: 232 ASIL 235
            S+L
Sbjct: 267 NSLL 270



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 41/223 (18%)

Query: 13  KPNTVTYNTIID-----------------------------------GLCKEGFVDKAKE 37
           +PN VTYN+++D                                   GLCK   VD+A  
Sbjct: 155 EPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVDEAAN 214

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           LF +M  +N+ P+ V YNSLI G C +    +      EM DRG  ++++T+N ++D LC
Sbjct: 215 LFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLC 274

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           KN ++D+A  LL  +   G+RP      NI  Y  L+DGLCK G+L++A+E+ Q L   G
Sbjct: 275 KNHQVDKAITLLTKIKNQGIRP------NIYTYTILVDGLCKNGRLRDAQEVYQDLLNKG 328

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
              +   Y + I+ LC +  +D+A  L   ME     P+ V +
Sbjct: 329 YQLDARIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPDGVTY 371



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 29/188 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +Y  +I+GLCK   VD+A  LF +M  +N+ P+ V YNSLI G C +    +    
Sbjct: 191 PNVRSYKVMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDF 250

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC- 123
             EM DRG  ++++T+N ++D LCKN ++D+A  LL  +   G+RP         D  C 
Sbjct: 251 IGEMHDRGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCK 310

Query: 124 -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                              +++   Y  +I+GLCK G L  A  L   +      P+ VT
Sbjct: 311 NGRLRDAQEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPDGVT 370

Query: 165 YNITIHAL 172
           Y ITI AL
Sbjct: 371 YEITIRAL 378



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 20/214 (9%)

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC-----KNRK 101
           + P+VV YN++I   C     ++   L+ EM+D+ +  DVVT+N ++  L      K RK
Sbjct: 35  VKPDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRK 94

Query: 102 ---------MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
                    M EA  LL+ M    V P      NI  +  L+DGLCK G++K AR +   
Sbjct: 95  EYGFSILGQMKEAVGLLNQMTSKTVTP------NIRTFTTLVDGLCKDGEVKKARNVLAI 148

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           + +  + PN+VTYN  +      ++++KA  LF  + ++G+ PN   +  ++    +   
Sbjct: 149 MIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKM 208

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +   L + M  +N++P     + ++D L K+ 
Sbjct: 209 VDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSR 242



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 30/214 (14%)

Query: 58  IHGFCYANDGNEAEYLFIEMMDRG----------LQSDVVTFNVIMDELCKNRKMDEATR 107
           + G C   +  +A Y    ++ +G          ++ DVV +N I+D LCK++ + +   
Sbjct: 1   MKGLCLNGEVRKALYFHDHVIAKGFHLNHIERLLVKPDVVMYNTIIDILCKDKLVSDGCD 60

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLID--------------GLCKIGKLKNARELSQSL 153
           L   MI   + PD      +V Y  LI               G   +G++K A  L   +
Sbjct: 61  LYSEMIDKKIYPD------VVTYNTLIYSLLNFVYIKIRKEYGFSILGQMKEAVGLLNQM 114

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
           T   + PN+ T+   +  LC D ++ KA ++   M  + V PN V + +LM  +    E 
Sbjct: 115 TSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEV 174

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +K  +L  ++  R + P      ++++ L KN++
Sbjct: 175 NKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKM 208


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y T++DG CK G +D A  +F  M  + + P  V YN ++HG   A     A+ 
Sbjct: 505 EPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKK 564

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM++ G    + T+ V++  LC+N   DEA  LL+ +    V+ D      I+ +  
Sbjct: 565 MFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFD------IITFNI 618

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  + K+G+ + A+EL  +++  GL+P V TYN+ I  L  +E  ++A +LF+ +E  G
Sbjct: 619 VISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSG 678

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            AP+  +   ++   ++K E +K    L  +D+ N+   AS +S++  L  +
Sbjct: 679 RAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSR 730



 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN++IDGLCK   + K++ +  QM D  I PN  TYNSLI+G+  A    E+  +
Sbjct: 190 PDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRV 249

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   GL   VV  N  +  LC++ ++ EA  + D M+  G +P      NI++Y  L
Sbjct: 250 FKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKP------NIISYSTL 303

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G   N   L   +   G++PN   +NI I+A      MDKA  +F DM+ KG+
Sbjct: 304 LHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGM 363

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+ V F T++ S  R       +     M    V P  ++   ++
Sbjct: 364 IPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLI 409



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 126/231 (54%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYN +ID   +    + A  +F ++    + P+V +YN+LI GF    + ++A  L
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+++ +  DVVT+N ++D LCK ++M ++ R+L+ M+  G+RP      N   Y  L
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRP------NNKTYNSL 233

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G    G  K +  + + ++ +GL+P VV  N  IHALC   ++ +A D+F  M +KG 
Sbjct: 234 IYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGP 293

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN + ++TL+  +  +   + +  L+  M  + ++P     +I+++   +
Sbjct: 294 KPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYAR 344



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 114/268 (42%), Gaps = 42/268 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN ++Y+T++ G   EG       L   M  + I PN   +N LI+ +      ++A  
Sbjct: 294 KPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAML 353

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M ++G+  D VTF  ++  LC+  ++D+A    + M+  GV P          Y C
Sbjct: 354 IFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSE------AVYRC 407

Query: 133 LIDGLCKIGKLKNARELSQS------------------------------------LTRA 156
           LI G C  G+L  A+EL                                       + + 
Sbjct: 408 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQT 467

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  PNVVT+N  +   C    M++A  L   M   G+ PNC I+ TL+  + +       
Sbjct: 468 GQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDA 527

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
           + + R M  + V P + + +II+  L +
Sbjct: 528 LTVFRDMLHKGVKPTSVLYNIILHGLFQ 555



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K + +T+N +I  + K G   +AKELF  +    + P V TYN +I         
Sbjct: 605 FAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESY 664

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
            EA+ LFI +   G   D    N I+  L K  ++ +A+  L ++
Sbjct: 665 EEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSII 709


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN +I+G CK G ++ A ++   M+   ++PN  TYN LI G+C +N  ++A  +
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGV 449

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++R +  DVVT+N ++D  C++   D A RLL LM   G+ PD +       Y  +
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQW------TYTSM 503

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK  +++ A +L  SL + G+ PNVV Y   I   C   ++D+AH +   M  K  
Sbjct: 504 IDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNC 563

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN + F  L+       +  +   L   M K  + P  S  +I++  L+K+
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKD 615



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 122/251 (48%), Gaps = 17/251 (6%)

Query: 2   ANGNREFGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY 54
           +N ++  GV+ K       P+ VTYN++IDG C+ G  D A  L   M D  + P+  TY
Sbjct: 441 SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTY 500

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            S+I   C +    EA  LF  +  +G+  +VV +  ++D  CK  K+DEA  +L+ M+ 
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
               P      N + +  LI GLC  GKLK A  L + + + GL P V T  I IH L  
Sbjct: 561 KNCLP------NSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLK 614

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP---- 230
           D   D A+  F  M   G  P+   +TT + ++ R+       +++  M +  V P    
Sbjct: 615 DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFT 674

Query: 231 YASILSIIVDL 241
           Y+S++    DL
Sbjct: 675 YSSLIKGYGDL 685



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY ++I G C+   +D A ++F +M  +    N V Y  LIHG C A   +EA  L
Sbjct: 251 PDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDL 310

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F++M D      V T+ V++  LC + +  EA  L+  M + G++P      NI  Y  L
Sbjct: 311 FVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKP------NIHTYTVL 364

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LC   K + AREL   +   GLMPNV+TYN  I+  C    ++ A D+   ME + +
Sbjct: 365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL 424

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +PN   +  L+  + + N   K + +L  M +R V+P     + ++D
Sbjct: 425 SPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLID 470



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 7/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N V Y  +I GLC    +D+A +LF++MKD+   P V TY  LI   C +   +EA 
Sbjct: 284 CRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEAL 343

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM + G++ ++ T+ V++D LC   K ++A  LL  M++ G+ P      N++ Y 
Sbjct: 344 NLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMP------NVITYN 397

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G CK G +++A ++ + +    L PN  TYN  I   C    + KA  +   M  +
Sbjct: 398 ALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLER 456

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            V P+ V + +L+    R         LL  M+ R ++P     + ++D L K++
Sbjct: 457 KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSK 511



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 114/212 (53%), Gaps = 6/212 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YNT+++ L + G VD+ K+++++M ++ + PN+ TYN +++G+C   +  EA     +++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           + GL  D  T+  ++   C+ + +D A ++ + M      P   C  N VAY  LI GLC
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM------PLKGCRRNEVAYTHLIHGLC 299

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
              ++  A +L   +      P V TY + I +LC  E+  +A +L  +ME  G+ PN  
Sbjct: 300 VARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIH 359

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +T L+ S   + +  K  ELL  M ++ +MP
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMP 391



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 7/230 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY ++ID LCK   V++A +LF  ++ + +NPNVV Y +LI G+C A   +EA  +
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ +    + +TFN ++  LC + K+ EAT L + M++ G++P       +     L
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQP------TVSTDTIL 608

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  L K G   +A    Q +  +G  P+  TY   I   C + ++  A D+   M   GV
Sbjct: 609 IHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGV 668

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA-SILSIIVDLL 242
           +P+   +++L+  +    +T+   ++L+ M      P   + LS+I  LL
Sbjct: 669 SPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLL 718



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 95/189 (50%), Gaps = 6/189 (3%)

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           YN+L++        +E + +++EM++  +  ++ T+N +++  CK   ++EA + +  ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
           + G+ PD F       Y  LI G C+   L +A ++   +   G   N V Y   IH LC
Sbjct: 246 EAGLDPDFF------TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLC 299

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
              ++D+A DLF+ M+     P    +T L+ S       S+ + L++ M++  + P   
Sbjct: 300 VARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIH 359

Query: 234 ILSIIVDLL 242
             ++++D L
Sbjct: 360 TYTVLIDSL 368



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 25/230 (10%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY T I   C+EG +  A+++  +M++  ++P++ TY+SLI G+      N A  
Sbjct: 634 KPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFD 693

Query: 73  LFIEMMDRGLQSDVVTFNVIMD---------------ELCKNRKM---DEATRLLDLMIQ 114
           +   M D G +    TF  ++                ELC    M   D    LL+ M++
Sbjct: 694 VLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVE 753

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALC 173
             V P+A       +Y  LI G+C++G L+ A ++   + R  G+ P+ + +N  +   C
Sbjct: 754 HSVTPNA------KSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCC 807

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             ++ ++A  +  DM   G  P       L+    +K E  +   + +++
Sbjct: 808 KLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNL 857



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           +N +++ L +   +DE  ++   M++  V P      NI  Y  +++G CK+G ++ A +
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCP------NIYTYNKMVNGYCKLGNVEEANQ 239

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
               +  AGL P+  TY   I   C  + +D A  +F +M +KG   N V +T L+    
Sbjct: 240 YVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLC 299

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
                 + ++L   M      P     ++++  L  +E
Sbjct: 300 VARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSE 337



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 103/262 (39%), Gaps = 59/262 (22%)

Query: 12  CKPNTVTYNTIIDGLC-----------------------------------KEGFVDKAK 36
           C PN++T+N +I GLC                                   K+G  D A 
Sbjct: 563 CLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAY 622

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
             F QM      P+  TY + I  +C      +AE +  +M + G+  D+ T++ ++   
Sbjct: 623 SRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGY 682

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR--------- 147
               + + A  +L  M   G  P     ++++ +  L++   K GK K +          
Sbjct: 683 GDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKH--LLE--MKYGKQKGSEPELCAMSNM 738

Query: 148 -------ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-KGVAPNCVI 199
                  EL + +    + PN  +Y   I  +C    +  A  +F  M+  +G++P+ ++
Sbjct: 739 MEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELV 798

Query: 200 FTTLMP---SFIRKNETSKVIE 218
           F  L+       + NE +KV++
Sbjct: 799 FNALLSCCCKLKKHNEAAKVVD 820



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           PN  +Y  +I G+C+ G +  A+++F  M ++E I+P+ + +N+L+   C     NEA  
Sbjct: 758 PNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAK 817

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G    + +  V++  L K  + +  T +   ++Q G   D       +A+  
Sbjct: 818 VVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDE------LAWKI 871

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           +IDG+ K G ++   EL   + + G   +  TY++ I  
Sbjct: 872 IIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score = 37.4 bits (85), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 20/113 (17%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           I  Y  L++ L + G +   +++   +    + PN+ TYN  ++  C    +++A+    
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVS 242

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
            +   G+ P+   +T+L+  + ++ +     ++   M     +RN + Y  ++
Sbjct: 243 KIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLI 295


>gi|302785101|ref|XP_002974322.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
 gi|300157920|gb|EFJ24544.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
          Length = 522

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 132/255 (51%), Gaps = 20/255 (7%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
            +C+PN+ TY  ++ GLCK G + +A ELF QM +    P+VV Y ++I G C A   ++
Sbjct: 66  ALCQPNSHTYGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCKARQFDK 125

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIV 128
           A   ++E M+     D+VT++  +D LC   K+D A  LL  +  +G  RPD      +V
Sbjct: 126 A-CSYLEKME---SPDIVTYSAFIDGLCNVGKVDYAFELLKQIQERGNARPD------VV 175

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y   I GLCK G++ NA EL   +   G  PN VTYN  + AL   + +D A  LF +M
Sbjct: 176 LYTIFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMRALAWHKSVDAARRLFTEM 235

Query: 189 EVKGVAPNCV------IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             KG  P+        ++ TL+ +F+R     +V EL++ M +R       +   +V +L
Sbjct: 236 IRKGCEPDGATYPTVGMYATLVRAFLRDERAMEVDELVKDMVRRGCSINHHLWDTLVRML 295

Query: 243 V---KNEISLNSIPQ 254
               K +ISL    Q
Sbjct: 296 FTSGKLKISLTVAEQ 310



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 109/218 (50%), Gaps = 12/218 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDGNEAEYL 73
           + V YN++IDGL K   VDKA E+F +  DE +  PN  TY +L+ G C A    EA  L
Sbjct: 35  SVVVYNSLIDGLVKAKLVDKALEIFSRDMDEALCQPNSHTYGALVSGLCKAGRIAEACEL 94

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M++R     VV +  ++D LCK R+ D+A   L+ M      PD      IV Y   
Sbjct: 95  FQQMIERRYTPHVVLYTTVIDGLCKARQFDKACSYLEKMES----PD------IVTYSAF 144

Query: 134 IDGLCKIGKLKNARE-LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           IDGLC +GK+  A E L Q   R    P+VV Y I I  LC   Q+D A +LF  ME  G
Sbjct: 145 IDGLCNVGKVDYAFELLKQIQERGNARPDVVLYTIFIKGLCKAGQVDNAVELFYKMEDIG 204

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             PN V + +LM +            L   M ++   P
Sbjct: 205 CPPNAVTYNSLMRALAWHKSVDAARRLFTEMIRKGCEP 242



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 113/273 (41%), Gaps = 49/273 (17%)

Query: 6   REFGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSL 57
           R+F   C        P+ VTY+  IDGLC  G VD A EL  Q+++  N  P+VV Y   
Sbjct: 121 RQFDKACSYLEKMESPDIVTYSAFIDGLCNVGKVDYAFELLKQIQERGNARPDVVLYTIF 180

Query: 58  IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           I G C A   + A  LF +M D G   + VT+N +M  L  ++ +D A RL   MI+ G 
Sbjct: 181 IKGLCKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMRALAWHKSVDAARRLFTEMIRKGC 240

Query: 118 RPD---------------AF--------------------CEINIVAYGCLIDGLCKIGK 142
            PD               AF                    C IN   +  L+  L   GK
Sbjct: 241 EPDGATYPTVGMYATLVRAFLRDERAMEVDELVKDMVRRGCSINHHLWDTLVRMLFTSGK 300

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN-----C 197
           LK +  +++     G   +V+TY   I  L    ++ KA   F  M   G  P       
Sbjct: 301 LKISLTVAEQALERGCEIHVLTYYEIIRGLVRLGKVSKALAQFQKMVEHG-KPTLSRQMA 359

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++ ++L+    R+       EL + M KR + P
Sbjct: 360 MVHSSLVTKLCRRGRLEDAYELHQKMVKRGLSP 392



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 100/240 (41%), Gaps = 45/240 (18%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +  ++ GLCK G + +A + + +++      +VV YNSLI G   A           +++
Sbjct: 4   FGFLVTGLCKAGKISEATDHYQRLRKSLRFLSVVVYNSLIDGLVKA-----------KLV 52

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           D+ L+     F+  MDE                         A C+ N   YG L+ GLC
Sbjct: 53  DKALE----IFSRDMDE-------------------------ALCQPNSHTYGALVSGLC 83

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A EL Q +      P+VV Y   I  LC   Q DKA      ME    +P+ V
Sbjct: 84  KAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCKARQFDKACSYLEKME----SPDIV 139

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            ++  +       +     ELL+ + +R N  P   + +I +  L K     N++  F +
Sbjct: 140 TYSAFIDGLCNVGKVDYAFELLKQIQERGNARPDVVLYTIFIKGLCKAGQVDNAVELFYK 199



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 6/170 (3%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
            + +++++  LC+ G ++ A EL  +M    ++P + +Y  LI     A     +  LF 
Sbjct: 359 AMVHSSLVTKLCRRGRLEDAYELHQKMVKRGLSPTIKSYKLLIKYHFKAGKAGVSRQLFE 418

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           +M          T+ V+++  C+   +DEA   L+  +    +P         +Y  LI 
Sbjct: 419 QMQKVDSPQTRDTYRVLLEGYCQAGMLDEAYGALEETVARQFKPTG------ASYLELIR 472

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            LC++G+ + A  + Q +   G  P +++YN    A     +   A ++F
Sbjct: 473 KLCELGRTEEAHHILQRMVSLGHRPLLLSYNAVFQAYYESGRFANAREVF 522



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/288 (19%), Positives = 102/288 (35%), Gaps = 78/288 (27%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM------KDENINPNVVTYNSLIHGFCYAN 65
           C PN VTYN+++  L     VD A+ LF +M       D    P V  Y +L+  F    
Sbjct: 205 CPPNAVTYNSLMRALAWHKSVDAARRLFTEMIRKGCEPDGATYPTVGMYATLVRAFLRDE 264

Query: 66  DGNEAEYLFIEM-----------------------------------MDRGLQSDVVTFN 90
              E + L  +M                                   ++RG +  V+T+ 
Sbjct: 265 RAMEVDELVKDMVRRGCSINHHLWDTLVRMLFTSGKLKISLTVAEQALERGCEIHVLTYY 324

Query: 91  VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150
            I+  L +  K+ +A      M++ G +P    ++ +V +  L+  LC+ G+L++A EL 
Sbjct: 325 EIIRGLVRLGKVSKALAQFQKMVEHG-KPTLSRQMAMV-HSSLVTKLCRRGRLEDAYELH 382

Query: 151 QSLTRAGLMPNVV-----------------------------------TYNITIHALCND 175
           Q + + GL P +                                    TY + +   C  
Sbjct: 383 QKMVKRGLSPTIKSYKLLIKYHFKAGKAGVSRQLFEQMQKVDSPQTRDTYRVLLEGYCQA 442

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             +D+A+    +   +   P    +  L+        T +   +L+ M
Sbjct: 443 GMLDEAYGALEETVARQFKPTGASYLELIRKLCELGRTEEAHHILQRM 490



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   +Y  +I    K G    +++LF QM+  +      TY  L+ G+C A   +EA   
Sbjct: 392 PTIKSYKLLIKYHFKAGKAGVSRQLFEQMQKVDSPQTRDTYRVLLEGYCQAGMLDEAYGA 451

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E + R  +    ++  ++ +LC+  + +EA  +L  M+  G RP       +++Y  +
Sbjct: 452 LEETVARQFKPTGASYLELIRKLCELGRTEEAHHILQRMVSLGHRP------LLLSYNAV 505

Query: 134 IDGLCKIGKLKNAREL 149
                + G+  NARE+
Sbjct: 506 FQAYYESGRFANAREV 521



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 12/214 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV-----VTYNSLIHGFCYAND 66
           C+ + +TY  II GL + G V KA   F +M  E+  P +     + ++SL+   C    
Sbjct: 316 CEIHVLTYYEIIRGLVRLGKVSKALAQFQKMV-EHGKPTLSRQMAMVHSSLVTKLCRRGR 374

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A  L  +M+ RGL   + ++ +++    K  K   + +L + M Q    P       
Sbjct: 375 LEDAYELHQKMVKRGLSPTIKSYKLLIKYHFKAGKAGVSRQLFEQM-QKVDSPQ-----T 428

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y  L++G C+ G L  A    +        P   +Y   I  LC   + ++AH +  
Sbjct: 429 RDTYRVLLEGYCQAGMLDEAYGALEETVARQFKPTGASYLELIRKLCELGRTEEAHHILQ 488

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            M   G  P  + +  +  ++      +   E+ 
Sbjct: 489 RMVSLGHRPLLLSYNAVFQAYYESGRFANAREVF 522


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 6/194 (3%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            C P  VTY  +++ LCK G +++A+ELF  M      PN V Y SLIHGF  +    EA
Sbjct: 290 ACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEA 349

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF EM++ G + DV+T  V++D LCK+   ++A +  + M++GG +P      N+V Y
Sbjct: 350 CSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKP------NVVTY 403

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I GL KIG++ NA  + + +   G  P+ VTY   +   C   ++D+A  L  +++ 
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463

Query: 191 KGVAPNCVIFTTLM 204
              +PN  ++++L+
Sbjct: 464 CSSSPNLQLYSSLV 477



 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 7/236 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  +  GLCK G VD+A ++  +      N +VV Y +L  G CY    + A  L
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSL 635

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G   D   +  I++ L K +K+++A +  D MI  G +P       +  Y  L
Sbjct: 636 FQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKP------TVATYTAL 689

Query: 134 IDGLCKIGKLKNA-RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +  LC  G +  A       L R  L+ +V+ Y+  IH  C   ++D A  LF DM  +G
Sbjct: 690 VQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRG 749

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
             P  V   +L    +R  +T K  ELL+ M      P+A+  + I+D L K++ S
Sbjct: 750 NVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDES 805



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 21/244 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P++VTY  ++DG CK G +D+A +L  ++   + +PN+  Y+SL+ G C   DG   E
Sbjct: 431 CFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLC---DGGSVE 487

Query: 72  YLFIEMMDRGLQSDVVTFNV-------IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               ++ +   QS     N+       I+  LCK  ++DEA R+   M+  G +PDA   
Sbjct: 488 NTLDDLFE---QSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDA--- 541

Query: 125 INIVAYGCLIDGLCKI--GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                Y  LI+GLC+    +++ A  L   L   G +P+ VTY      LC   ++D+A 
Sbjct: 542 ---TTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAV 598

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            +  +   +G   + V +T L      + +  + + L + M ++   P A+    I++ L
Sbjct: 599 KMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGL 658

Query: 243 VKNE 246
           +K +
Sbjct: 659 IKGK 662



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 11/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEA 70
           CKP+  T+  ++D LCK G  +KA E+F +M     + P+   + +++     A    EA
Sbjct: 185 CKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEA 244

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F +M   G   D + +N ++D L K     EA ++LD M+     P        V Y
Sbjct: 245 REVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTE------VTY 298

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           G L++ LCK G L+ A EL + +  +G  PN V Y   IH      +M +A  LF +M  
Sbjct: 299 GILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVE 358

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASIL 235
            G  P+ +  T ++    +     +      E++R   K NV+ Y +I+
Sbjct: 359 AGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTII 407



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 7/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT ++N +I    +    D A   F  MK +   P++ T+  L+   C A    +A  +
Sbjct: 152 PNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEV 211

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F EMM  G +  D      ++  L K +++ EA  +   M + G  PDA      +AY  
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDA------IAYNT 265

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGL K G  + A ++  ++     +P  VTY I +++LC    +++A +LF  M   G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             PN VI+T+L+  F +     +   L   M +    P     ++++D L K+
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKS 378



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 93/196 (47%), Gaps = 7/196 (3%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           +V TYN L++      + ++   +  EM+  G+  +  +FN+++    + R+ D+A    
Sbjct: 118 DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-PNVVTYNIT 168
           ++M +   +PD      +  +  L+D LCK G  + A E+   +   G + P+   +   
Sbjct: 178 EIMKRKRCKPD------LHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           +  L   +++ +A ++F  ME  G  P+ + + T++    +     + +++L +M  +  
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291

Query: 229 MPYASILSIIVDLLVK 244
           +P      I+V+ L K
Sbjct: 292 VPTEVTYGILVNSLCK 307



 Score = 43.9 bits (102), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 44/102 (43%)

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           +AG   +V TYN  ++ L  ++   + + +  +M   G+APN   F  L+ SF R     
Sbjct: 112 QAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRAD 171

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
             +     M ++   P      I+VD L K  +   +   F+
Sbjct: 172 DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFH 213



 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
           Q G + D F       Y CL++ L           + + + +AG+ PN  ++NI I +  
Sbjct: 112 QAGFQHDVF------TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFA 165

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              + D A   F  M+ K   P+   F  L+    +     K  E+   M     +P
Sbjct: 166 RTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVP 222


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 12/239 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P++ TY T+I GLC+ G +D+AK+LF +M +++  P VVTY SLI+G C + + +EA 
Sbjct: 188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAM 247

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               EM  +G++ +V T++ +MD LCK+ +  +A  L ++M+  G RP      N+V Y 
Sbjct: 248 RYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRP------NMVTYT 301

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCK  K++ A EL   +   GL P+   Y   I   C   +  +A +   +M + 
Sbjct: 302 TLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILG 361

Query: 192 GVAPNCVIFTTLMPS---FIR---KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ PN + +   + +    +R    N  S+   L  SM  R +      L  +V  L K
Sbjct: 362 GITPNRLTWNIHVKTSNEVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLDSLVKCLCK 420



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 14/243 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VTY ++I+GLC    VD+A     +MK + I PNV TY+SL+ G C      +A 
Sbjct: 223 CAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAM 282

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  MM RG + ++VT+  ++  LCK +K+ EA  LLD M   G++PDA        YG
Sbjct: 283 ELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAG------LYG 336

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI-------TIHALCNDEQMDKAHDL 184
            +I G C + K + A      +   G+ PN +T+NI        +  LC +    +A  L
Sbjct: 337 KVISGFCAVSKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCTNYP-SRAFTL 395

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +L M  +G++       +L+    +K E  K ++L+  +     +P      +++   + 
Sbjct: 396 YLSMRSRGISVEVETLDSLVKCLCKKGEFQKAVQLVDEIVTDGCIPNKGTWKLLIGHTLD 455

Query: 245 NEI 247
           N I
Sbjct: 456 NTI 458



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           RE G+   P   + N +I  LC+ +G VD   ++F +M     +P+  TY +LI G C  
Sbjct: 148 REIGL--PPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRF 205

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA+ LF EM+++     VVT+  +++ LC ++ +DEA R ++ M   G+ P     
Sbjct: 206 GRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEP----- 260

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+  Y  L+DGLCK G+   A EL + +   G  PN+VTY   I  LC ++++ +A +L
Sbjct: 261 -NVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVEL 319

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              M ++G+ P+  ++  ++  F   ++  +    L  M    + P
Sbjct: 320 LDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITP 365



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NE 69
           C P+   Y T++  L +E  ++ A + +  M++  + P V + N LI   C  NDG  + 
Sbjct: 117 CDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALC-RNDGTVDA 175

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
              +F EM  RG   D  T+  ++  LC+  ++DEA +L   M++    P       +V 
Sbjct: 176 GLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAP------TVVT 229

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI+GLC    +  A    + +   G+ PNV TY+  +  LC D +  +A +LF  M 
Sbjct: 230 YTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMM 289

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +G  PN V +TTL+    ++ +  + +ELL  M+ + + P A +   ++
Sbjct: 290 ARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVI 339



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           +F +MKD + +P+   Y +++      N  N A   +  M + GL   V + NV++  LC
Sbjct: 108 VFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALC 167

Query: 98  KN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           +N   +D   ++   M + G  PD++       YG LI GLC+ G++  A++L   +   
Sbjct: 168 RNDGTVDAGLKIFHEMPKRGCDPDSY------TYGTLISGLCRFGRIDEAKKLFTEMVEK 221

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
              P VVTY   I+ LC  + +D+A     +M+ KG+ PN   +++LM    +   + + 
Sbjct: 222 DCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQA 281

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           +EL   M  R   P     + ++  L K +    ++   +R
Sbjct: 282 MELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDR 322



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 92/214 (42%), Gaps = 36/214 (16%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY++++DGLCK+G   +A ELF  M      PN+VTY +LI G C      EA  
Sbjct: 259 EPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVE 318

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------ 120
           L   M  +GL+ D   +  ++   C   K  EA   LD MI GG+ P+            
Sbjct: 319 LLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWNIHVKTSN 378

Query: 121 -------------AFC----------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
                        AF            + +     L+  LCK G+ + A +L   +   G
Sbjct: 379 EVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLDSLVKCLCKKGEFQKAVQLVDEIVTDG 438

Query: 158 LMPNVVTYNITI-HALCNDEQMDKAHDLFLDMEV 190
            +PN  T+ + I H L N    + +  L  D+++
Sbjct: 439 CIPNKGTWKLLIGHTLDNTIVGEASDSLLRDLDI 472


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 1   MANGNREFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS 56
           +A   R F V+ +    PN VTY  +I G    G  +    L  +M+   + PN+ TYN 
Sbjct: 54  VAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNC 113

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           L+  +C   +   A  LF EM  +G+  +VV++N+++  LC++ K+ +A +L + M + G
Sbjct: 114 LVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREG 173

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           + P      ++V +  LIDG  K GK+ NA      +  AGL P+VVTYN  I   C   
Sbjct: 174 IHP------SMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRAR 227

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            +  A   F DM+ + +AP  V +T L+ +F ++NE  +  E+L  M+K
Sbjct: 228 DIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEK 276



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V+YN +I GLC+ G +  A +LF  M+ E I+P++VT+N LI G+  A   + A + F
Sbjct: 142 NVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFF 201

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   GLQ  VVT+N ++   C+ R +  A R    M +  + P        V Y  LI
Sbjct: 202 NQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTK------VTYTILI 255

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
               K  ++  A E+   + +AGL  +V +Y + +HALC + +M  A  LF  M+ KGV 
Sbjct: 256 GAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVK 315

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           PN V++  ++  + R+  + K + L+  M K  ++P  +   + + LL
Sbjct: 316 PNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYCLTIRLL 363



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N +IDG  K G +  A   F QMK   + P+VVTYN LI GFC A D   A   
Sbjct: 176 PSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRA 235

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M +R L    VT+ +++    K  +MD A  +L  M + G+      E+++ +YG L
Sbjct: 236 FSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGL------EVDVQSYGVL 289

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  LC  GK+ +AR+L QS+   G+ PN V Y++ I+    +    KA  L ++M   G+
Sbjct: 290 LHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGL 349

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN   +   +     + +  +   L+  M+   +    SI  ++ D
Sbjct: 350 IPNVASYCLTIRLLCNEGKCQEAEALIGDMEDAGLQTSESICRVLFD 396



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 8/226 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
             ++ G C+ G V +A+ +F  M    + PN VTY +LIHG+           L  EM  
Sbjct: 42  TALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRR 101

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM-IQGGVRPDAFCEINIVAYGCLIDGLC 138
            G++ ++ T+N ++ E C+  +   A  L D M ++G VR       N+V+Y  LI GLC
Sbjct: 102 GGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVR-------NVVSYNILIAGLC 154

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           + GKLK+A +L +++ R G+ P++VT+N+ I       +M  A   F  M+  G+ P+ V
Sbjct: 155 RHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVV 214

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +  L+  F R  + +  I     M +R + P     +I++    K
Sbjct: 215 TYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAK 260



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 6/202 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN +I G C+   +  A   F  MK+  + P  VTY  LI  F   N+ + A  
Sbjct: 210 QPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFE 269

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM   GL+ DV ++ V++  LC   KM  A +L   M   GV+P      N V Y  
Sbjct: 270 MLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKP------NNVLYDM 323

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G  + G    A  L   + ++GL+PNV +Y +TI  LCN+ +  +A  L  DME  G
Sbjct: 324 MIYGYGREGSSYKALRLIMEMRKSGLIPNVASYCLTIRLLCNEGKCQEAEALIGDMEDAG 383

Query: 193 VAPNCVIFTTLMPSFIRKNETS 214
           +  +  I   L  +  R + ++
Sbjct: 384 LQTSESICRVLFDAKARLHSST 405



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 11/190 (5%)

Query: 75  IEMMDRGLQS-----DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           + ++ RG +S     DV     ++   C++  + EA R+ D+M + GV P      N V 
Sbjct: 22  LAVLARGTKSGDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTP------NEVT 75

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI G    G+ +    L   + R G+ PN+ TYN  +   C   +   A  LF +M 
Sbjct: 76  YTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMP 135

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
           +KGV  N V +  L+    R  +     +L  +M +  + P     ++++D   K     
Sbjct: 136 LKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMS 195

Query: 250 NSIPQFNRQK 259
           N++  FN+ K
Sbjct: 196 NALHFFNQMK 205


>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g61520, mitochondrial; Flags: Precursor
 gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
 gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +IDG C+ G ++ AKE+  +MK++ I PNVVT N+++ G C  +  N A 
Sbjct: 402 CAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAV 461

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F++M   G++ +VVT+  ++   C    +++A    + M++ G  PDA        Y 
Sbjct: 462 VFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDA------KIYY 515

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLC++ +  +A  + + L   G   +++ YN+ I   C+    +K +++  DME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKE 575

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G  P+ + + TL+  F +  +   V  ++  M +  + P  +    ++D
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVID 624



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 123/242 (50%), Gaps = 13/242 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDG 67
           G V K +++ +NT+IDGLCK G + +A+EL ++MK +E   PN VTYN LI G+C A   
Sbjct: 363 GNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKL 422

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A+ +   M +  ++ +VVT N I+  +C++  ++ A      M + GV+       N+
Sbjct: 423 ETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKG------NV 476

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD---L 184
           V Y  LI   C +  ++ A    + +  AG  P+   Y   I  LC   Q+ + HD   +
Sbjct: 477 VTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLC---QVRRDHDAIRV 533

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              ++  G + + + +  L+  F  KN T KV E+L  M+K    P +   + ++    K
Sbjct: 534 VEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGK 593

Query: 245 NE 246
           ++
Sbjct: 594 HK 595



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 16/222 (7%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN------INPNVVTYNSLIHGFCY 63
           V  +P+ VT   +I+ LCK   VD+A E+F +M+ +       I  + + +N+LI G C 
Sbjct: 323 VKIRPDVVTLGILINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCK 382

Query: 64  ANDGNEAEYLFIEM-MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                EAE L + M ++     + VT+N ++D  C+  K++ A  ++  M +  ++P   
Sbjct: 383 VGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKP--- 439

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V    ++ G+C+   L  A      + + G+  NVVTY   IHA C+   ++KA 
Sbjct: 440 ---NVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAM 496

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFI---RKNETSKVIELLR 221
             +  M   G +P+  I+  L+       R ++  +V+E L+
Sbjct: 497 YWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLK 538



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 111/265 (41%), Gaps = 36/265 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+V     I  LCK    + A ++   +           +N+L+       D +    L
Sbjct: 257 PNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDL 316

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM---------------IQGGVR 118
            ++M +  ++ DVVT  ++++ LCK+R++DEA  + + M               I     
Sbjct: 317 VLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTL 376

Query: 119 PDAFCEI---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
            D  C++                     N V Y CLIDG C+ GKL+ A+E+   +    
Sbjct: 377 IDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDE 436

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PNVVT N  +  +C    ++ A   F+DME +GV  N V + TL+ +    +   K +
Sbjct: 437 IKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAM 496

Query: 218 ELLRSMDKRNVMPYASILSIIVDLL 242
                M +    P A I   ++  L
Sbjct: 497 YWYEKMLEAGCSPDAKIYYALISGL 521



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y  +I GLC+      A  +  ++K+   + +++ YN LI  FC  N+  +  
Sbjct: 507 CSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVY 566

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M   G + D +T+N ++    K++  +   R+++ M + G+ P       +  YG
Sbjct: 567 EMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDP------TVTTYG 620

Query: 132 CLIDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            +ID  C +G+L  A +L + +   + + PN V YNI I+A        +A  L  +M++
Sbjct: 621 AVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           K V PN   +  L      K +   +++L+  M +++  P    + I+++ L
Sbjct: 681 KMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERL 732



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 7/206 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + YN +I   C +   +K  E+   M+ E   P+ +TYN+LI  F    D    E +  +
Sbjct: 547 LAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQ 606

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLID 135
           M + GL   V T+  ++D  C   ++DEA +L  D+ +   V P      N V Y  LI+
Sbjct: 607 MREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNP------NTVIYNILIN 660

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
              K+G    A  L + +    + PNV TYN     L    Q +    L  +M  +   P
Sbjct: 661 AFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEP 720

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLR 221
           N +    LM      +E  K+ + ++
Sbjct: 721 NQITMEILMERLSGSDELVKLRKFMQ 746



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+++TYNT+I    K    +  + +  QM+++ ++P V TY ++I  +C   + +EA  
Sbjct: 578 KPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALK 637

Query: 73  LFIEMMDRGLQSDV----VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           LF +M   GL S V    V +N++++   K     +A  L + M    VRP      N+ 
Sbjct: 638 LFKDM---GLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRP------NVE 688

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            Y  L   L +  + +   +L   +      PN +T  I +  L   +++ K
Sbjct: 689 TYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVK 740



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 6/214 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           DK   L+   K++NI   VV  N LI  F      N++  L  E +D  +++  V  NV+
Sbjct: 134 DKLLRLYEIAKEKNIPLTVVATNLLIRWFGRMGMVNQS-VLVYERLDSNMKNSQVR-NVV 191

Query: 93  MDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +D L +N  +D+A ++LD M+Q   V P      +IV +      L    K+     L  
Sbjct: 192 VDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKGRLLTEEKII---ALIS 248

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
             +  G+ PN V     I +LC + + + A D+  D+           F  L+    R  
Sbjct: 249 RFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNM 308

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + S++ +L+  MD+  + P    L I+++ L K+
Sbjct: 309 DISRMNDLVLKMDEVKIRPDVVTLGILINTLCKS 342



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTV YN +I+   K G   +A  L  +MK + + PNV TYN+L         G     L
Sbjct: 650 PNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKL 709

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
             EM+++  + + +T  ++M+ L  +   DE  +L   M QG
Sbjct: 710 MDEMVEQSCEPNQITMEILMERLSGS---DELVKLRKFM-QG 747


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+  ++ I+ GLC++G +  A+  F  +   N+ P+V  YN +I G+    D  EA  L
Sbjct: 394 PNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRL 453

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  + D+ +   +VTFN ++   CKNRK+ EA RLL+ +   G+ P A      V Y  L
Sbjct: 454 YKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSA------VTYTTL 507

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++  C+ G +    EL   +    + P VVTY + I  LC   +++++  L  DM  KG+
Sbjct: 508 MNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGL 567

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           AP+ + + T++  F +  +  K  ELL  M   N+ P  +  ++++D L +
Sbjct: 568 APDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCR 618



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N + Y+ ++  LCK G VD+A +L  +M+  N+ P++VTY+ LIHG C      +A  L+
Sbjct: 325 NVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLY 384

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM    +  +    + I+  LC+   + +A    D +I   +RPD      +  Y  +I
Sbjct: 385 KEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPD------VTLYNIMI 438

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K+G ++ A  L + L    + P++VT+N  I+  C + ++ +A  L   +++ G+ 
Sbjct: 439 DGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLE 498

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           P+ V +TTLM ++  +   +K+ ELL  M+ +++ P     ++++  L K  
Sbjct: 499 PSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQR 550



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YN +IDG  K G V++A  L+ +++D+ I P++VT+NSLI+GFC      EA  
Sbjct: 428 RPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARR 487

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   +   GL+   VT+  +M+  C+   +++   LL  M    + P       +V Y  
Sbjct: 488 LLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEP------TVVTYTV 541

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLCK  KL+ + +L + +   GL P+ +TYN  I   C  + M KA +L  DM +  
Sbjct: 542 VIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHN 601

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           + P    +  L+    R  +      +L S+  RN+
Sbjct: 602 LEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNI 637



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 115/229 (50%), Gaps = 11/229 (4%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  +EF     P+ V++NTI+   CK G  D AK  F  M    I P+  +YN LIHG  
Sbjct: 176 NDGKEFA----PSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLI 231

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDA 121
            A    EA  L  +M  +GLQ D+VT+ ++         M  A  ++  M+   G++PD 
Sbjct: 232 VAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPD- 290

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                +V Y  LI G C++G ++ A  L + L  +G   NV+ Y++ + +LC   Q+D+A
Sbjct: 291 -----LVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEA 345

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             L  +ME   + P+ V ++ L+    ++ +  + I+L + M    + P
Sbjct: 346 LQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFP 394



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 6/210 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N++I G CK   V +A+ L   +K   + P+ VTY +L++ +C   + N+   L
Sbjct: 464 PSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHEL 523

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM  + ++  VVT+ V++  LCK RK++E+ +LL+ M   G+ PD       + Y  +
Sbjct: 524 LLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQ------ITYNTI 577

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I   CK   ++ A EL   +    L P   TYN+ I  LC    ++ A  + + ++ + +
Sbjct: 578 IQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNI 637

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
               V +TT++ +   K +  + +++   M
Sbjct: 638 NLTKVAYTTMIKAHCVKGDAQRAVKVFHQM 667



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 112/219 (51%), Gaps = 7/219 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           +P+ VTY  +  G    G +  A+E+  +M  DE + P++VTY  LI G C   +  EA 
Sbjct: 252 QPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEAL 311

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +++  G Q +V+ ++V++  LCK  ++DEA +LL  M    ++PD      +V Y 
Sbjct: 312 RLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPD------LVTYS 365

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCK GK++ A +L + +    + PN   ++  +  LC    +  A   F  + + 
Sbjct: 366 ILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMS 425

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + P+  ++  ++  +++  +  + + L + +  + + P
Sbjct: 426 NLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITP 464



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 29/242 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY T+++  C+EG ++K  EL L+M  ++I P VVTY  +I G C      E+  
Sbjct: 498 EPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQ 557

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           L  +M  +GL  D +T+N I+   CK + M +A  LLD M+   + P         D  C
Sbjct: 558 LLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLC 617

Query: 124 E------------------INI--VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              IN+  VAY  +I   C  G  + A ++   +   G   ++ 
Sbjct: 618 RYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIK 677

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            Y+  I+ LC    +++A   F  M   GV+P+  IF  ++ +F R      V ELL  M
Sbjct: 678 DYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVM 737

Query: 224 DK 225
            K
Sbjct: 738 IK 739



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 18  TYNTIIDGLCKEG-FVDKAKELFLQMKD-ENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           T + I+DGLC +  F D    LFL+  D +   P+VV++N+++  +C     + A+  F 
Sbjct: 152 TSSIIVDGLCGQSRFRDAV--LFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFC 209

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
            M+  G+  D  ++N+++  L     M+EA  L + M + G++PD      +V Y  +  
Sbjct: 210 MMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPD------MVTYKIVAK 263

Query: 136 GLCKIGKLKNARELSQS-LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           G   +G +  ARE+ Q  LT  GL P++VTY + I   C    +++A  L  D+   G  
Sbjct: 264 GFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQ 323

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            N ++++ L+ S  ++ +  + ++LL  M+  N+ P     SI++  L K 
Sbjct: 324 LNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQ 374



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 79/149 (53%), Gaps = 6/149 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P   TYN +IDGLC+ G V+ A  + + ++D NIN   V Y ++I   C   D   A  
Sbjct: 603 EPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVK 662

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M+++G +  +  ++ +++ LCK   ++EA     +M+  GV PD   EI    +  
Sbjct: 663 VFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQ--EI----FEM 716

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +++   + G + +  EL   + + GL+ +
Sbjct: 717 MLNAFHRAGHVHSVFELLAVMIKFGLLHD 745


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + T++DG CK   +  A+ LF+ M    ++PN+  YN LIHG C + +  EA  L
Sbjct: 336 PNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGL 395

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM    L  DV T+ ++++ LC   ++ EA RL   M    + P +      V Y  L
Sbjct: 396 LSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSS------VTYNSL 449

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK   ++ A +L   +T +G+ PN++T++  I   C    +  A  L+ +M +KG+
Sbjct: 450 IHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGI 509

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V +TTL+ +  ++    + + L   M +  + P     + +VD   K
Sbjct: 510 VPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWK 560



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   Y   I  LC+E  +++A+++F  MK   + PN+ TY+++I G+C   +  +A  
Sbjct: 265 KPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYG 324

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ E++   L  +VV F  ++D  CK R++  A  L   M++ GV P      N+  Y C
Sbjct: 325 LYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDP------NLYVYNC 378

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK G +  A  L   +    L P+V TY I I+ LC +E++ +A+ LF  M+ + 
Sbjct: 379 LIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNER 438

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+ V + +L+  F ++    K ++L   M    V P     S ++D
Sbjct: 439 IFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLID 486



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 8/236 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  PN  TY+ +IDG CK G + +A  L+ ++    + PNVV + +L+ GFC A +  
Sbjct: 298 GVV--PNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELV 355

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  LF+ M+  G+  ++  +N ++   CK+  M EA  LL  M    + PD F      
Sbjct: 356 AARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVF------ 409

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI+GLC   +L  A  L Q +    + P+ VTYN  IH  C +  ++KA DL  +M
Sbjct: 410 TYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEM 469

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              GV PN + F+TL+  + +       + L   M  + ++P     + ++D   K
Sbjct: 470 TSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFK 525



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 14/225 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++VTYN++I G CKE  ++KA +L  +M    + PN++T+++LI G+C   +   A  L
Sbjct: 441 PSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGL 500

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM  +G+  DVVT+  ++D   K   M EA RL   M++ G+ P      N   + CL
Sbjct: 501 YFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHP------NDHTFACL 554

Query: 134 IDGLCKIGKLKNAREL----SQSLTRAGLMP----NVVTYNITIHALCNDEQMDKAHDLF 185
           +DG  K G+L +A +     +Q+ T   ++       V +   I  LC +  + +A   F
Sbjct: 555 VDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFF 614

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            DM+  GV P+   + +++ + +R+   +  + L   M K  ++P
Sbjct: 615 SDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTGILP 659



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 10/250 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NE 69
           C P++     I++GL +    D     +  M    + P+V  Y+ L    C    G  ++
Sbjct: 194 CSPDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQ--CCFKQGFPSK 251

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            E L  EM   G++ +V  + + + +LC+  KM+EA ++ +LM   GV P      N+  
Sbjct: 252 KEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVP------NLYT 305

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +IDG CK G L+ A  L + +  A L+PNVV +   +   C   ++  A  LF+ M 
Sbjct: 306 YSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMV 365

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             GV PN  ++  L+    +     + + LL  M+  N+ P     +I+++ L   E   
Sbjct: 366 KFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLA 425

Query: 250 NSIPQFNRQK 259
            +   F R K
Sbjct: 426 EANRLFQRMK 435



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 11/205 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +T++T+IDG CK   +  A  L+ +M  + I P+VVTY +LI       +  EA  
Sbjct: 475 EPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALR 534

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ------GGVRPDAFCEIN 126
           L+ +M++ G+  +  TF  ++D   K  ++ +A   +D  ++      G       C   
Sbjct: 535 LYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDA---IDFYLENNQAATGKSIVQRSC-WK 590

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V + CLI+GLC+ G +  A      +   G+ P++ +Y   + A   ++++     L  
Sbjct: 591 YVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHC 650

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKN 211
           DM   G+ PN ++   L+  F ++N
Sbjct: 651 DMIKTGILPNLMV-NQLLAMFYQEN 674


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 22/248 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY+ +I  LC    V+KA  LF +MK   + P+V TY  LI  FC A    +A++L
Sbjct: 455 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 514

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G    VVT+  ++    K +++ +A  +   M+  G RP      N V YG L
Sbjct: 515 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRP------NDVTYGAL 568

Query: 134 IDGLCKIGKLKNARELSQSLT----------------RAGLMPNVVTYNITIHALCNDEQ 177
           +DGLCK G +  A E+   L                 R  L PNVVTY   +  LC   +
Sbjct: 569 VDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHK 628

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +D AH+L   M   G  PN +++  L+  F +  +     E+   M K   +P     + 
Sbjct: 629 VDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 688

Query: 238 IVDLLVKN 245
           ++D + K+
Sbjct: 689 LIDRMFKD 696



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 125/249 (50%), Gaps = 22/249 (8%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P  VTY  +I    K   V +A ++F +M D    PN VTY +L+ G C A + ++
Sbjct: 521 VGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISK 580

Query: 70  AEYLFIEMM---------------DRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           A  ++ +++               DR  L  +VVT+  ++D LCK  K+D A  LLD M+
Sbjct: 581 AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 640

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             G      CE N + Y  LIDG CK GK+ +A+E+   +T+ G +P+V TY   I  + 
Sbjct: 641 SSG------CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 694

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            D ++D A  +   M      PN V +T ++    R  E+ K ++LL  M+++   P   
Sbjct: 695 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 754

Query: 234 ILSIIVDLL 242
             + ++D L
Sbjct: 755 TYTALIDGL 763



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 6/246 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T++ G  K+  +   K +   M  E  NPN   +NSL+H +C   D   A 
Sbjct: 307 CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAY 366

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAY 130
            L   M   G     V +N+ +  +C   K+  +  LLDL  +  G    A C +N V  
Sbjct: 367 KLLNRMTTCGCPPGYVVYNIFIGSICGQEKL-PSPDLLDLAEKIYGEMLAANCVLNKVNV 425

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
                 LC +GK   A +L + + R G +P+  TY+  I  LC+  +++KA  LF +M++
Sbjct: 426 ANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM 485

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            GV P+   +T L+ SF +     +   L   M      P     + ++   +K +    
Sbjct: 486 VGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAK---- 541

Query: 251 SIPQFN 256
            +PQ N
Sbjct: 542 QVPQAN 547



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 9/227 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++   C+ G  ++A E   ++KD    P+ VTYN+L+     A   +    +  EM +
Sbjct: 178 NVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSE 237

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G   D  T       LCK  +  +A  +++       R D   +++ V    +I GL +
Sbjct: 238 SGFCMDRFTVGCFAHALCKEGRWADALDMIE-------REDF--KLDTVLCTHMISGLME 288

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
                 A      +     +PNVVTY   +      +Q+     +   M  +G  PN  +
Sbjct: 289 ASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSL 348

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           F +L+ S+  + + +   +LL  M      P   + +I +  +   E
Sbjct: 349 FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE 395



 Score = 40.4 bits (93), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 73/216 (33%), Gaps = 34/216 (15%)

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           Y++L     +     +AE L  E+ +   +      NV++   C+    +EA   L  + 
Sbjct: 142 YDALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLK 201

Query: 114 QGGVRP------------------------------DAFCEINIVAYGCLIDGLCKIGKL 143
             G RP                                FC ++    GC    LCK G+ 
Sbjct: 202 DFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFC-MDRFTVGCFAHALCKEGRW 260

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
            +A ++   + R     + V     I  L      D+A      M      PN V + TL
Sbjct: 261 ADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTL 317

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +  F++K +      ++  M      P  S+ + +V
Sbjct: 318 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLV 353


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 117/244 (47%), Gaps = 29/244 (11%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y T++ G C +G +  A+  F +M+ + +  + VTY ++I+G C A +  EAE L  EM 
Sbjct: 364 YTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMW 423

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC------ 123
            R L  D VT+ V++D  CK  KM EA ++ + M+Q GV P         D  C      
Sbjct: 424 ARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQ 483

Query: 124 --------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
                         E+N   Y  LI+GLCK G L+ A      +  A L P+V TY   I
Sbjct: 484 AANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLI 543

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            ALC    +D+AH L  +M  KG+ P  V +  LM  F          +LL  M ++N+ 
Sbjct: 544 DALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIH 603

Query: 230 PYAS 233
           P A+
Sbjct: 604 PNAA 607



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTY  +IDG CK G + +A ++   M    + PNVVTY +L  G C   D   A  L  E
Sbjct: 432 VTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHE 491

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M ++GL+ +  T+N +++ LCK   +++A R +  M    ++PD +       Y  LID 
Sbjct: 492 MSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVY------TYTTLIDA 545

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK G L  A  L Q +   G+ P +VTYN+ ++  C   +++    L   M  K + PN
Sbjct: 546 LCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPN 605

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              + +LM  +  +N      E+ + M  R+V P  +  +I++
Sbjct: 606 AATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILI 648



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 8/246 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N   + GV   PN VTY  + DGLCK+G V  A EL  +M ++ +  N  TYNSLI+G
Sbjct: 453 MHNAMVQRGVT--PNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 510

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C A    +A     +M    L+ DV T+  ++D LCK+  +D A  LL  M+  G++P 
Sbjct: 511 LCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKP- 569

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 IV Y  L++G C  G+++  ++L   +    + PN  TYN  +   C +  M  
Sbjct: 570 -----TIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKS 624

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             +++  M  + V PN   +  L+    +     + +     M ++     A+  S ++ 
Sbjct: 625 TTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIR 684

Query: 241 LLVKNE 246
           LL K +
Sbjct: 685 LLNKKK 690



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN++I+GLCK G++++A      M    + P+V TY +LI   C + D + A  L 
Sbjct: 500 NACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLL 559

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+D+G++  +VT+NV+M+  C + +++   +LLD M++  + P+A        Y  L+
Sbjct: 560 QEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNA------ATYNSLM 613

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C    +K+  E+ + +    + PN  TYNI I   C    M +A     +M  KG  
Sbjct: 614 KQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFR 673

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
                ++ L+    +K +  +  EL   M K  +   + +    +DL
Sbjct: 674 LTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYIDL 720



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y +++  LC +G++  A  +   M    +  +   Y +++ GFC   D   A  
Sbjct: 323 EPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARR 382

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM  +GL +D VT+  +++ LC+  +++EA +LL  M    +      +++ V Y  
Sbjct: 383 WFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRL------DVDEVTYTV 436

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK GK+  A ++  ++ + G+ PNVVTY      LC    +  A++L  +M  KG
Sbjct: 437 LIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKG 496

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  N   + +L+    +     + +  +  MD   + P     + ++D L K+
Sbjct: 497 LELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKS 549



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 9/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN ++  LC  G V  A++LF +M      P+VVTY  LIHG C   +   A  L 
Sbjct: 258 NVCSYNILLKALCDAGRVKDARQLFDEMASA---PDVVTYGILIHGHCALGELENAVKLL 314

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+  G++ +   +  ++  LC    + +A R+++ M+Q  V  D         Y  ++
Sbjct: 315 DEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDE------ALYTTVL 368

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C  G L +AR     + R GL  + VTY   I+ LC   ++++A  L  +M  + + 
Sbjct: 369 SGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLD 428

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + V +T L+  + ++ + ++  ++  +M +R V P     + + D L K 
Sbjct: 429 VDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQ 479



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 6/188 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY T+ID LCK G +D+A  L  +M D+ I P +VTYN L++GFC +      + 
Sbjct: 533 KPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKK 592

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+++ +  +  T+N +M + C    M   T +   M    V P      N   Y  
Sbjct: 593 LLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGP------NENTYNI 646

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK   +K A      + + G      +Y+  I  L   ++  +A +LF DM  +G
Sbjct: 647 LIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEG 706

Query: 193 VAPNCVIF 200
           +     ++
Sbjct: 707 LTAESDVY 714



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 6/157 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  VTYN +++G C  G V+  K+L   M ++NI+PN  TYNSL+  +C  N+      
Sbjct: 568 KPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTE 627

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M  R +  +  T+N+++   CK R M EA    D MIQ G R      +   +Y  
Sbjct: 628 IYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFR------LTATSYSA 681

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           LI  L K  K   AREL   + + GL      Y+  I
Sbjct: 682 LIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYI 718



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           IE+       +V ++N+++  LC   ++ +A +L D M      PD      +V YG LI
Sbjct: 248 IELFQELPHKNVCSYNILLKALCDAGRVKDARQLFDEMASA---PD------VVTYGILI 298

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C +G+L+NA +L   +   G+ PN   Y   +  LC+   +  A  +  DM  + V 
Sbjct: 299 HGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVI 358

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +  ++TT++  F  K +          M ++ +
Sbjct: 359 LDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGL 392


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V + T+I G C +G +  A+ LF +M+   +  + VT+ +LI+G C A +  EA+ + 
Sbjct: 356 DAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVL 415

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+D+GL  DVVT+ V++D  CK   M EA R+ + M+   V P      N+V Y  L 
Sbjct: 416 QEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAP------NVVTYTALS 469

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK G ++ A EL   +   GL  NV TYN  I+ LC    +++A  +  +ME  G  
Sbjct: 470 DGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHR 529

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +   +TTL+ +  +  E  +   +L+ M  + + P  +  +++++
Sbjct: 530 TDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMN 575



 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 6/242 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N   G    PN VTY  + DGLCK+G V  A EL  +M ++ +  NV TYNSLI+G C  
Sbjct: 451 NEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKF 510

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            +  +A  +  EM   G ++DV T+  ++D LCK+ + D A  +L  M+  G++P     
Sbjct: 511 GNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKP----- 565

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            +I  Y  L++G C  G+++  ++L + +    + PNVVTYN  +   C D+ M    ++
Sbjct: 566 -SIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEI 624

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  M  + VAPN   +  L+    +     + +   + M ++ +   AS  S ++ LL K
Sbjct: 625 YKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNK 684

Query: 245 NE 246
            +
Sbjct: 685 KK 686



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 17/194 (8%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           + EL  +++   ++P+  + N+++         +EA  LF E+ D+    +V + N+++ 
Sbjct: 212 SAELLRRLRQYGLSPSPESCNAVLSRLPL----DEAIALFRELPDK----NVCSHNILLK 263

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
            L    ++ +A +  D M      PD      +V YG ++ G C  G+L+NA +L   + 
Sbjct: 264 ALLSAGRLKDACQHFDEMSSP---PD------VVTYGTMVHGYCVRGELENAVKLLDEMA 314

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
             GL  N   Y   I  LCN  Q+  A  +  DM + GVA + V+FTT++  F  K + +
Sbjct: 315 AKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLA 374

Query: 215 KVIELLRSMDKRNV 228
               L   M KR +
Sbjct: 375 AARRLFEEMQKRGL 388



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN+++   C +  +    E++  M  + + PN  TYN LI G C A +  EA Y
Sbjct: 599 RPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALY 658

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV--RPDAF 122
              EM+++GL+    +++ ++  L K +K  EA    D M   G+   PD +
Sbjct: 659 FHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVY 710



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 17/168 (10%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   +   GL     + N ++  L     +DEA  L   +      PD     N+ ++  
Sbjct: 215 LLRRLRQYGLSPSPESCNAVLSRL----PLDEAIALFREL------PDK----NVCSHNI 260

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L   G+LK+A    Q        P+VVTY   +H  C   +++ A  L  +M  KG
Sbjct: 261 LLKALLSAGRLKDA---CQHFDEMSSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKG 317

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +  N  ++T+++     K + S  + +L  M    V   A + + ++ 
Sbjct: 318 LESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVIS 365



 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I G CK   + +A     +M ++ +     +Y++LI         +EA   
Sbjct: 635 PNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVF 694

Query: 74  FIEMMDRGLQSDVVTFNVIMD 94
           F +M + GL ++   ++  MD
Sbjct: 695 FDKMRNEGLTAEPDVYSFYMD 715


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 129/281 (45%), Gaps = 64/281 (22%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYNTI+ GLCK G V  A++L   M ++N+ P++V+YN+LI+G+    +  EA  L
Sbjct: 293 PTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLL 352

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG----------------- 116
           F E+  RGL   VVT+N ++D LC+   +D A RL D MI+ G                 
Sbjct: 353 FAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCK 412

Query: 117 ------------------VRPDAFCEI-----------------------------NIVA 129
                             ++PD F  I                             +++ 
Sbjct: 413 LGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLIT 472

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y   IDGL K+G LK A EL + +   GL+P+ VTY   IHA      + KA  +FL+M 
Sbjct: 473 YNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEML 532

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            KG+ P+ V +T L+ S+  +      I     M ++ V P
Sbjct: 533 SKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHP 573



 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTYNT++D  CK+G V +A +L LQM+     PN VTYN L++G  ++ +  +A+ 
Sbjct: 187 RPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKE 246

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+  GL+    T++ ++   C+  ++DEA+RL + M+  G  P       +V Y  
Sbjct: 247 LIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVP------TLVTYNT 300

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLCK G++ +AR+L   +    LMP++V+YN  I+       + +A  LF ++  +G
Sbjct: 301 IMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRG 360

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V + TL+    R  +    + L   M K    P     +I+V
Sbjct: 361 LVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILV 407



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 120/232 (51%), Gaps = 8/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +++GL   G +++AKEL  +M    +  +  TY+ LI G+C     +EA 
Sbjct: 221 CLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEAS 280

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ RG    +VT+N IM  LCK  ++ +A +LLD+M+   + PD      +V+Y 
Sbjct: 281 RLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPD------LVSYN 334

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G  ++G +  A  L   L   GL+P+VVTYN  I  LC    +D A  L  +M   
Sbjct: 335 TLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKH 394

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP--YASILSIIVDL 241
           G  P+   FT L+  F +        EL   M  R + P  +A I  I+ +L
Sbjct: 395 GPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGEL 446



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 131/296 (44%), Gaps = 64/296 (21%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+IDGLC+ G +D A  L  +M     +P+V T+  L+ GFC   +   A+ L
Sbjct: 363 PSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKEL 422

Query: 74  FIEMMDRGLQSD-----------------------------------VVTFNVIMDELCK 98
           F EM++RGLQ D                                   ++T+NV +D L K
Sbjct: 423 FDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHK 482

Query: 99  NRKMDEATRLLDLMIQGGVRPD----------------------AFCEI-------NIVA 129
              + EA+ L+  M+  G+ PD                       F E+       ++V 
Sbjct: 483 LGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVT 542

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI      G+LK A      +   G+ PNV+TYN  I+ LC   +MD+A+  F +M+
Sbjct: 543 YTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQ 602

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            KG++PN   +T L+          + + L + M  R + P +   S ++  L K+
Sbjct: 603 AKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHLNKD 658



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           ++  +D A+E++  M +  I P VVTYN+++  FC      EA  L ++M   G   + V
Sbjct: 167 RDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDV 226

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           T+NV+++ L  + ++++A  L+  M++ G+      E++   Y  LI G C+ G+L  A 
Sbjct: 227 TYNVLVNGLSHSGELEQAKELIQEMLRLGL------EVSAYTYDPLIRGYCEKGQLDEAS 280

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
            L + +   G +P +VTYN  ++ LC   ++  A  L   M  K + P+ V + TL+  +
Sbjct: 281 RLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGY 340

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            R     +   L   +  R ++P     + ++D L +
Sbjct: 341 TRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCR 377



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 1/103 (0%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN +I+GLCK   +D+A + F +M+ + I+PN  TY  LI+  C      EA  L
Sbjct: 573 PNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRL 632

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           + +M+DR +Q D  T + ++  L K+ K     R L+ +I  G
Sbjct: 633 YKDMLDREIQPDSCTHSALLKHLNKDYK-SHVVRHLENVIAAG 674


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 125/240 (52%), Gaps = 8/240 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N   EFG V  P+    + ++DGL K+G +  A +L  ++K   + P++  YN+LI+ 
Sbjct: 307 MMNEMIEFGFV--PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINS 364

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     +EAE LF  M  +GL  + VT+++++D  CK  K+D A   L  M + G++  
Sbjct: 365 MCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKAT 424

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            +       Y  LI G CK+GKL+ A+ L   +   GL PNVV Y   I   C + ++  
Sbjct: 425 VY------PYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHN 478

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  L+ +M  KG++PN   FT L+      N  ++  +L   M + NV+P     +++++
Sbjct: 479 AFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIE 538



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 130/289 (44%), Gaps = 71/289 (24%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y ++I G CKEG +  A  L+ +M  + I+PN  T+ +LI G C+AN   EA  
Sbjct: 457 KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANK 516

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           LF EM++  +  + VT+NV+++  CK      A  LLD M++ G+ PD +          
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC 576

Query: 123 ---------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
                                      C  N+V Y  LI+GLCKIG +  A  L + +  
Sbjct: 577 STGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLA 636

Query: 156 A----------------------------------GLMPNVVTYNITIHALCNDEQMDKA 181
           +                                  G + N VTYNI I   C   ++ +A
Sbjct: 637 SNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEA 696

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            ++ ++M   G++P+C+ ++T++  + R+ +  + I+L  SM  R V P
Sbjct: 697 AEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNP 745



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 14/240 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K     Y+++I G CK G +  AK LF +M    + PNVV Y SLI G+C   + + A  
Sbjct: 422 KATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFR 481

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM  +G+  +  TF  ++  LC   +M EA +L   M++  V P      N V Y  
Sbjct: 482 LYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIP------NEVTYNV 535

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM---- 188
           LI+G CK G    A EL   +   GL+P+  TY   I  LC+  ++ +A +   D+    
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595

Query: 189 ----EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
               E++G  PN V +T L+    +     K   L R M   N +P  +  +  +D L  
Sbjct: 596 QKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTS 655



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 93/208 (44%), Gaps = 40/208 (19%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN--------------------- 50
           C PN VTY  +I+GLCK G +DKA+ L  +M   N  PN                     
Sbjct: 604 CLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAI 663

Query: 51  -------------VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                         VTYN LI GFC      EA  + + M+D G+  D ++++ I+ E C
Sbjct: 664 QLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYC 723

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +   + EA +L + M+  GV PD       VAY  LI G C  G+L  A EL   + R G
Sbjct: 724 RRGDLKEAIKLWESMLNRGVNPDT------VAYNFLIYGCCVTGELTKAFELRDDMMRRG 777

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLF 185
           + PN  TYN  IH  C    +    D F
Sbjct: 778 VKPNRATYNSLIHGTCLMSSVSSTADYF 805



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 15/225 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENIN------PNVVTYNSLIHGFCYAN 65
           P+T TY  +I GLC  G V +A+E    LQ + + +N      PNVVTY +LI+G C   
Sbjct: 563 PDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIG 622

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++AE L  EM+      +  T+   +D L     +++A +L D++++G +        
Sbjct: 623 LMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFL-------A 675

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N V Y  LI G CK+G+++ A E+  ++  +G+ P+ ++Y+  I+  C    + +A  L+
Sbjct: 676 NTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLW 735

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             M  +GV P+ V +  L+       E +K  EL   M +R V P
Sbjct: 736 ESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKP 780



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   Y  ++  LC+     +A+E+  +M+    + +V TYN  I G C      EA  
Sbjct: 212 RPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVE 271

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   +  +GL++DV T+  ++  LCK  + +    +++ MI+ G  P         A   
Sbjct: 272 IKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSE------AAVSN 325

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGL K G + +A +L   + + G+ P++  YN  I+++C D ++D+A  LF +M  KG
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASILS 236
           + PN V ++ L+ SF ++ +    +  L  M     K  V PY+S++S
Sbjct: 386 LFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLIS 433



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 6/204 (2%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M D  I P + T + +++G         A +LF E++  GL+ DV  +  ++  LC+ + 
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
              A  ++  M   G      C++++  Y   I GLCK  ++  A E+   L+  GL  +
Sbjct: 231 FIRAREVIGRMESSG------CDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRAD 284

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V TY   +  LC  E+ +   ++  +M   G  P+    + L+    +K       +L+ 
Sbjct: 285 VGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVN 344

Query: 222 SMDKRNVMPYASILSIIVDLLVKN 245
            + K  V P   + + +++ + K+
Sbjct: 345 KVKKFGVAPSLFVYNALINSMCKD 368


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            YNT++ G C+ G +D A+ L   M    + P+  TY  +I G C      +A  L  +M
Sbjct: 111 AYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALALLDDM 167

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           + RG Q  VVT+ V+++ +CK+    EA  +LD M   G  P      NIV Y  +I+G+
Sbjct: 168 LQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTP------NIVTYNVIINGM 221

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C+ G++ +A+E+   L+  G  P++V+Y   +  LC   + D    LF +M  K   PN 
Sbjct: 222 CREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNE 281

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V F  L+  F R     + I++L+ M +    P  ++ +I+++ + K 
Sbjct: 282 VTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQ 329



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 114/213 (53%), Gaps = 8/213 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN II+G+C+EG VD AKE+  ++      P++V+Y +++ G C A   ++ +
Sbjct: 207 CTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVK 266

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFCEINIVAY 130
            LF EM+D+    + VTF++++   C+   ++ A ++L  M Q G  P+   C I     
Sbjct: 267 VLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNI----- 321

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I+ +CK G++ +A +   ++   G  P+ ++Y   +  LC   + + A +L  +M  
Sbjct: 322 --VINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVR 379

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           K   PN V F T +    +K    + I+L+  M
Sbjct: 380 KNCPPNEVTFNTFICILCQKGLIEQAIKLIELM 412



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 112/219 (51%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY  +++ +CK     +A  +  +M+ +   PN+VTYN +I+G C     ++A+
Sbjct: 172 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 231

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   +   G Q D+V++  ++  LC  R+ D+   L   M+      D  C  N V + 
Sbjct: 232 EILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV------DKKCVPNEVTFD 285

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G ++ A ++ Q +++ G  PN    NI I+A+C   ++D A+D   +M + 
Sbjct: 286 MLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMY 345

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G  P+ + +TT++    R        ELL  M ++N  P
Sbjct: 346 GCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPP 384



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 121/233 (51%), Gaps = 9/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+NT I  LC++G +++A +L   M +   +  +VTYN+L+HGFC     + A 
Sbjct: 382 CPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSAL 441

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  +     + + +T+  ++  LC   ++D A  LL  MIQ        C +N V + 
Sbjct: 442 ELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKD------CPLNAVTFN 492

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G ++ A EL   +   G  PN++T+N  +  +  D   ++A +L   +  K
Sbjct: 493 VLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSK 552

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           GV+ + + +++++    R++ T + I++L ++    + P   + + I+  L K
Sbjct: 553 GVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCK 605



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 9/241 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T++Y T++ GLC+ G  + AKEL  +M  +N  PN VT+N+ I   C      +A 
Sbjct: 347 CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAI 406

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M + G    +VT+N ++   C   ++D A  L +         +  CE N + Y 
Sbjct: 407 KLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFN---------NLPCEPNTITYT 457

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLC   +L  A EL   + +     N VT+N+ +   C    +++A +L   M   
Sbjct: 458 TLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEH 517

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  PN + F TL+    +   + + +ELL  +  + V       S +VD+L + + +  +
Sbjct: 518 GCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEA 577

Query: 252 I 252
           I
Sbjct: 578 I 578



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 11/237 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+G  C    VTYN ++ G C +G VD A ELF  +  E   PN +TY +L+ G C+A  
Sbjct: 414 EYG--CSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAER 468

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A  L   M+ +    + VTFNV++   C+   ++EA  L++ M++ G  P      N
Sbjct: 469 LDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTP------N 522

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           ++ +  L+DG+ K    + A EL   L   G+  + +TY+  +  L  +++ ++A  +  
Sbjct: 523 LITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLH 582

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
            ++  G+ P   ++  ++ +  ++ ET + I+    M     MP  S   I+++ L 
Sbjct: 583 AVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLA 639



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PNT+TY T++ GLC    +D A EL   M  ++   N VT+N L+  FC      EA 
Sbjct: 449 CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAM 508

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +MM+ G   +++TFN ++D + K+   +EA  LL  ++  GV       ++ + Y 
Sbjct: 509 ELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGV------SLDTITYS 562

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++D L +  + + A ++  ++   G+ P V  YN  + ALC   + D+A D F  M   
Sbjct: 563 SVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSN 622

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  PN   +  L+     +    +   +L  +  + V+
Sbjct: 623 GCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVL 660



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +D  EA  L      RG   DV     ++  LC+  +  +A R+L      G   D F  
Sbjct: 53  DDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVF-- 110

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
               AY  L+ G C+ G+L  AR L  S+    + P+  TY   I  LC+  ++  A  L
Sbjct: 111 ----AYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALAL 163

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             DM  +G  P+ V +T L+ +  + +   + + +L  M  +   P     ++I++ + +
Sbjct: 164 LDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCR 223



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 55/110 (50%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T+TY++++D L +E   ++A ++   ++D  + P V  YN ++   C   + ++A   F
Sbjct: 557 DTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFF 616

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
             M+  G   +  T+ ++++ L     + EA  +L  +   GV   +  E
Sbjct: 617 AYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLSKSLLE 666



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           + EA RL++     G  PD +          LI  LC+ G+  +A  + ++   +G   +
Sbjct: 55  LAEAARLVETSSSRGEAPDVYLCTK------LIRNLCRRGRTSDAARVLRTAEASGAPVD 108

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V  YN  +   C   ++D A  L   M V    P+   +T ++     +      + LL 
Sbjct: 109 VFAYNTLVAGYCRYGRLDAARRLIASMPVP---PDAYTYTPIIRGLCDRGRVGDALALLD 165

Query: 222 SMDKRNVMPYASILSIIVDLLVKN 245
            M +R   P     +++++ + K+
Sbjct: 166 DMLQRGCQPSVVTYTVLLEAVCKS 189



 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 33/72 (45%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P    YN I+  LCK    D+A + F  M      PN  TY  LI G  +     EA Y
Sbjct: 590 RPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARY 649

Query: 73  LFIEMMDRGLQS 84
           +  E+  +G+ S
Sbjct: 650 VLSELYAKGVLS 661


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN       I  LCK G  ++A E++ Q+  + +  NV T N+LIHG C  N+  EA  
Sbjct: 419 KPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATK 478

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M++ G++ D +T+N+++   CK  KMDEA +L D MI+ G +PD F       +  
Sbjct: 479 VLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLF------TFNI 532

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +   C +GK++    L   +   GL P++VTY   I   C  + M KA++   ++   G
Sbjct: 533 FLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNG 592

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN VI+  L+  + R    S  I +L +M    + P
Sbjct: 593 LRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQP 630



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 29/235 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T+N  +   C  G V++   L  QMK E + P++VTY ++I G+C A D ++A  
Sbjct: 524 KPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANE 583

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------ 120
              E+M  GL+ + V +N ++    +N  + +A  +LD M   G++P             
Sbjct: 584 YLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMC 643

Query: 121 ------------AFC-----EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                       A C     E+ ++ Y  +I G CKIGK+  A    + +   G+ PN +
Sbjct: 644 HAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKM 703

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           TY   + A       ++A  LF +M   G+ P+ V + TL+  F   +   K++E
Sbjct: 704 TYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVE 758



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 7/243 (2%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G    G    P+  TY  +I  LC+ G +D A  +  +++   I P VVTYN L+   C 
Sbjct: 199 GEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCK 258

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           +    EA  L   M++  ++  +VTF +++  L + ++  E   +L  M   G+ P    
Sbjct: 259 SGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITP---- 314

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N V Y  +I   C+ G    A +L   +   G+   VVTYN+   ALC + +M+ A  
Sbjct: 315 --NEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEK 372

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIR-KNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +  +M + G+  +C +F +++   +R       V+ L+R M  R + P  ++++  +  L
Sbjct: 373 ILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQEL 432

Query: 243 VKN 245
            K+
Sbjct: 433 CKS 435



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 119/269 (44%), Gaps = 42/269 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKE----------------------------------- 37
           K   VTYN I   LCKEG ++ A++                                   
Sbjct: 348 KQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVL 407

Query: 38  -LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
            L  +M    + PN     + I   C +    EA  ++ +++ +GL  +V T N ++  L
Sbjct: 408 RLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGL 467

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C+   M EAT++L  M+  GV      E++ + Y  +I G CK  K+  A +L   + + 
Sbjct: 468 CQGNNMKEATKVLKAMVNSGV------ELDRITYNIMIQGCCKASKMDEAIQLRDDMIKR 521

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P++ T+NI +H  CN  ++++   L   M+ +G+ P+ V + T++  + +  +  K 
Sbjct: 522 GFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKA 581

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKN 245
            E L  + K  + P A I + ++    +N
Sbjct: 582 NEYLTELMKNGLRPNAVIYNALIGGYGRN 610



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 42/265 (15%)

Query: 30  GFVDKAKELFL-----------------------------------QMKD-ENINPNVVT 53
           G + +A + FL                                   +M+D + + P+V T
Sbjct: 154 GSLSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHT 213

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           Y ++I   C A + + A  +  E+   G+Q  VVT+NV+MD LCK+ +++EA RL   M+
Sbjct: 214 YTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMV 273

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
           +G VRP      +IV +G LI GL +  +      + Q +   G+ PN V YN  I   C
Sbjct: 274 EGRVRP------SIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHC 327

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
                 +A  LF +M  KG+    V +  +  +  ++ E     ++L  M    +M + S
Sbjct: 328 RKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCS 387

Query: 234 ILSIIVDLLVKNEISLNSIPQFNRQ 258
           + + +V   ++    L+ + +  R+
Sbjct: 388 LFNSVVAWHLRGTGRLDLVLRLIRE 412



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 114/284 (40%), Gaps = 67/284 (23%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKEL---------------------------------- 38
           +P  VTYN ++D LCK G V++A  L                                  
Sbjct: 243 QPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGA 302

Query: 39  -FLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
              +M+   I PN V YN +I   C     +EA  LF EM+ +G++  VVT+N+I   LC
Sbjct: 303 VLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALC 362

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY--------------------------- 130
           K  +M+ A ++LD M+  G+        ++VA+                           
Sbjct: 363 KEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPND 422

Query: 131 ----GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
                C I  LCK GK + A E+   +   GL  NV T N  IH LC    M +A  +  
Sbjct: 423 ALMTAC-IQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLK 481

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            M   GV  + + +  ++    + ++  + I+L   M KR   P
Sbjct: 482 AMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKP 525



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 10/173 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTYN+++  +C  G V++ K +F Q   ++I   V+ Y  +I GFC     +EA  
Sbjct: 629 QPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVM 688

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM  RG+  + +T+  +M    K+   +EA++L D M+  G+ PD+      V+Y  
Sbjct: 689 YFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDS------VSYNT 742

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL----CNDEQMDKA 181
           LI G C++  L    E    ++   L  +  +YN  +  +    C  E +  A
Sbjct: 743 LISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDGITTPWCQKEAVSNA 795


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 8/244 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ GV  KPN +TY T+I  LC+ G +D A E F QM D+ + P+   Y+ LI GFC
Sbjct: 418 NEMRDHGV--KPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFC 475

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 +A+ L  E+M+ G+  D+V F+ I++ LCK  ++ +A  + DL +  G+ P A 
Sbjct: 476 THGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA- 534

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                V Y  L+DG C +GK++ A  +  ++  AG+ PN V Y   ++  C   ++D+  
Sbjct: 535 -----VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF +M  KG+ P+ +++  ++        T         M +  +       SI++  L
Sbjct: 590 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 649

Query: 243 VKNE 246
            KN 
Sbjct: 650 FKNR 653



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 125/259 (48%), Gaps = 41/259 (15%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G VC P+ V YNT+IDG  KEG V+KA +LF +M    I P+ VTY+S++H  C A  
Sbjct: 210 EGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARA 269

Query: 67  GNEAEYLFIEMMDRGL--------------------------------QS---DVVTFNV 91
            ++AE    +M+++G+                                QS   DVVTFN+
Sbjct: 270 MDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNM 329

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M  LCK  K+ EA  + D M   G  PD F      +Y  +++G    G L +  +L  
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVF------SYNIMLNGYATKGCLVDMTDLFD 383

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G+ P + T+N+ I A  N   +DKA  +F +M   GV PN + +TT++ +  R  
Sbjct: 384 LMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIG 443

Query: 212 ETSKVIELLRSMDKRNVMP 230
           +    +E    M  + V P
Sbjct: 444 KMDDAMEKFNQMIDQGVAP 462



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y T+++G CK G +D+   LF +M  + I P+ + YN +I G   A     A+ 
Sbjct: 566 EPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKV 625

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM + G+  +  T+++++  L KNR  DEA  L   +    V+      I+I+    
Sbjct: 626 KFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVK------IDIITLNT 679

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G+ +  +++ A++L  S++R+GL+P VVTY+I I  L  +  +++A D+F  M+  G
Sbjct: 680 MIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             P+  +   ++   ++KNE  +    L  +D+RN         ++VDL 
Sbjct: 740 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLF 789



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 143/307 (46%), Gaps = 64/307 (20%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC----------- 62
           P+ VT+N ++  LCK G + +A+++F  M  +  NP+V +YN +++G+            
Sbjct: 322 PDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 381

Query: 63  ----------------------YANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                                 YAN G  ++A  +F EM D G++ +V+T+  ++  LC+
Sbjct: 382 FDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCR 441

Query: 99  NRKMDEATRLLDLMIQGGVRPD---------AFC--------------------EINIVA 129
             KMD+A    + MI  GV PD          FC                     ++IV 
Sbjct: 442 IGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVL 501

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  +I+ LCK+G++ +A+ +       GL P  V Y++ +   C   +M+KA  +F  M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             G+ PN V++ TL+  + +     + + L R M ++ + P   + +II+D L +   ++
Sbjct: 562 SAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTV 621

Query: 250 NSIPQFN 256
            +  +F+
Sbjct: 622 PAKVKFH 628



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 2   ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           A G R    V  P + TY  ++D   +    + A   F Q+    +  +++  N L+ GF
Sbjct: 101 AQGPR----VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGF 156

Query: 62  CYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           C A   +EA + L     + G   DV ++++++  LC   K  +A  LL +M +GG    
Sbjct: 157 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG---- 212

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A C  ++VAY  +IDG  K G +  A +L + + + G+ P+ VTY+  +HALC    MDK
Sbjct: 213 AVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDK 272

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A      M  KGV PN   +  L+  +    +  + + + + M +++++P     ++++ 
Sbjct: 273 AEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMG 332

Query: 241 LLVK 244
            L K
Sbjct: 333 SLCK 336



 Score = 37.4 bits (85), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 44/96 (45%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTY+ +I  L KEG V++A+++F  M++    P+    N ++      N+   A   
Sbjct: 707 PCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAY 766

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
             ++ +R    + +T  +++D         E  R L
Sbjct: 767 LSKIDERNFSLEHLTTMLLVDLFSSKGTCREHIRFL 802


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 131/268 (48%), Gaps = 40/268 (14%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL------------- 57
            CKP+ VT+NT+I GLCK G +D+A+++  +M+      N+VTYN+L             
Sbjct: 84  ACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEA 143

Query: 58  -------------------IHGFCYANDGNEAEYLFIEMMDR--GLQSDVVTFNVIMDEL 96
                              IHGFC + + + A Y F+E M +  G   D  T++++++ L
Sbjct: 144 VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRA-YGFLEEMKQRAGCSPDTFTYSILINGL 202

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK+  + +A  LL  MI    R D  C  ++VA+  L+DG CK   L  AREL  S+   
Sbjct: 203 CKSSNLRKADELLQEMIG---RKD--CCASVVAFNTLVDGYCKAQDLDRARELLSSMLEH 257

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+VVTY+  I  LC    +DK   L   M  +G  P+ V +T L+    +  +  + 
Sbjct: 258 GCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEA 317

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
             L++ M +    P A   S++ D L K
Sbjct: 318 CRLVKRMLEDGCTPNAVTYSLVFDGLCK 345



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 7/200 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C P+T TY+ +I+GLCK   + KA EL  +M   ++   +VV +N+L+ G+C A D + A
Sbjct: 188 CSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRA 247

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L   M++ G   DVVT++ I+D LC+   +D+   LL+ M+  G +PD      +V Y
Sbjct: 248 RELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPD------VVTY 301

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L+ GLCK GK+  A  L + +   G  PN VTY++    LC  +++D A+DL   +  
Sbjct: 302 TVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRD 361

Query: 191 KGVAPNCVIFTTLMPSFIRK 210
           KG   + V F  L+ S  ++
Sbjct: 362 KGRITDVVAFEALLLSVKKR 381



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 8/217 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDG 67
           G+   P+T TYN II G CK G +D+A     +MK     +P+  TY+ LI+G C +++ 
Sbjct: 149 GMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNL 208

Query: 68  NEAEYLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            +A+ L  EM+ R    + VV FN ++D  CK + +D A  LL  M++ G  PD      
Sbjct: 209 RKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPD------ 262

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  +IDGLC+ G +     L + +   G  P+VVTY + +  LC   +M +A  L  
Sbjct: 263 VVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVK 322

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            M   G  PN V ++ +     + ++     +LL S+
Sbjct: 323 RMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSI 359



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 130 YGCLIDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           Y  L+   C  G+L+ A +L + +  + G+ P    YN  +HALC   ++ +A ++  +M
Sbjct: 21  YFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNM 80

Query: 189 EVKGVAPNCVIFTTLMPSFI---RKNETSKVI-ELLRSMDKRNVMPYASIL 235
           +     P+ V F TL+       R +E  +V+ E+ RS    N++ Y +++
Sbjct: 81  KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLI 131


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 31/268 (11%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R FG  C PN V+YN +++GL  +G  D+AKEL  QM    +  +  TYN LI GFC   
Sbjct: 234 RMFG--CDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKE 291

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----- 120
              EA  L  EM+ RG    VVT+N IM  LC+  ++ +A R LD+M+   + PD     
Sbjct: 292 MFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYN 351

Query: 121 -----------------AFCEI-------NIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                             F E+       ++V Y  LIDG C+ G L  A+ +   + + 
Sbjct: 352 TLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKH 411

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P+VVT+ I +   C    +  A +LF +M  +G+ P+C+ +TT +   ++    SK 
Sbjct: 412 GLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKA 471

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
             +   M      P     +++++ L K
Sbjct: 472 FGMKEEMKAEGFPPDLITYNVLINGLCK 499



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 29/246 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YNT+I G  + G   +A  LF +++ +N+ P+VVTYN+LI G C   + + A+ +
Sbjct: 345 PDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGM 404

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI-------- 125
             +M+  GL  DVVTF +++   C+   +  A  L D M+  G++PD             
Sbjct: 405 KDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELK 464

Query: 126 ---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                +++ Y  LI+GLCK+G   +A EL Q +   G++P+ VT
Sbjct: 465 LGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVT 524

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   IHA      + KA ++F DM  KG+ P+ V +T L+ S+  +       +    M 
Sbjct: 525 YTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQ 584

Query: 225 KRNVMP 230
            + V P
Sbjct: 585 DKGVSP 590



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 132/296 (44%), Gaps = 64/296 (21%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+IDG C+ G +D AK +   M    + P+VVT+  L+ GFC   +   A+ L
Sbjct: 380 PSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKEL 439

Query: 74  FIEMMDRGLQSD-----------------------------------VVTFNVIMDELCK 98
           F EM+ RGL+ D                                   ++T+NV+++ LCK
Sbjct: 440 FDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCK 499

Query: 99  NRKMDEATRLLDLMIQGGVRPD----------------------AFCEI-------NIVA 129
               D+A  L+  M   G+ PD                       F ++       ++V 
Sbjct: 500 LGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVT 559

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI      G+L  A++    +   G+ PNV+TYN  I+ LC +  MD A++LF +ME
Sbjct: 560 YTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEME 619

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            KGV+PN   +T L+            ++L + M  R + P +   S ++  L K+
Sbjct: 620 SKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKD 675



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +I+GLCK G  D A EL  +M+ E I P+ VTY S+IH    +    +AE +
Sbjct: 485 PDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEV 544

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+ +G+   VVT+ V++       ++D A +  D M   GV P      N++ Y  L
Sbjct: 545 FSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSP------NVITYNAL 598

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK   +  A  L   +   G+ PN  TY I I+   N +    A  L+ DM  + +
Sbjct: 599 IYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREI 658

Query: 194 APNCVIFTTLMPSFIRKNETSKVIEL 219
            P+    + LM    +  +   V+ L
Sbjct: 659 KPDSCTHSALMKHLSKDYKLLAVLRL 684



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 110/228 (48%), Gaps = 8/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N ++  L  +  V++ +E++  M    I P +VT+N+++   C   +   A  +
Sbjct: 170 PDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEV 229

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G   + V++NV+++ L    + D A  L++ M   G++  A        Y  L
Sbjct: 230 LDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAH------TYNPL 283

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-KG 192
           I G CK    + A +L + +   G +P VVTYN  +++LC   ++  A   +LD+ V + 
Sbjct: 284 IRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARR-YLDVMVNED 342

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+ V + TL+  + R    ++ + L   +  +N++P     + ++D
Sbjct: 343 LMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLID 390



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 10/132 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN +I GLCKE  +D A  LF +M+ + ++PN  TY  LI+         +A  L
Sbjct: 590 PNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKL 649

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+DR ++ D  T + +M  L K+ K+    RL +L       P A  EIN      +
Sbjct: 650 YKDMLDREIKPDSCTHSALMKHLSKDYKLLAVLRLENL-------PLAIVEINST---WI 699

Query: 134 IDGLCKIGKLKN 145
            +G  K+ + KN
Sbjct: 700 AEGFVKLEESKN 711


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+  DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVP------NXVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AHDL  +M +KG+ P+ +
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALIS 354



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 239 PNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGY 412

Query: 194 APNCV 198
            PN V
Sbjct: 413 VPNVV 417



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I+GLCKE  +D A ELF +M B  + PN VT+ +LI G C     + A  +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEI 263

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  L
Sbjct: 264 YRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK------ITYTTL 317

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L+ A E  + + +  +  + V Y   I  LC + +   A  +  +M   G+
Sbjct: 318 IDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 377

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P    +T ++    +K +     +LL+ M +   +P
Sbjct: 378 KPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVP 414



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +D+   L   M+   ++P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+B GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +  + V +T L+    ++  +    ++LR M    + P     ++I++
Sbjct: 342 IRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIIN 389



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   K+        T   +I              
Sbjct: 63  RSDXYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWG 122

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M   CK  ++  A  + D + + G+RP      ++V++  
Sbjct: 123 FYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  KIG L     L   +  +G+ P+V TY++ I+ LC + +MD A++LF +M   G
Sbjct: 177 LMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ R M  ++++P
Sbjct: 237 LVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLP 274



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 63/108 (58%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+IDG CKEG ++ A E   +M  ENI  + V Y +LI G C      +AE 
Sbjct: 308 KPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEK 367

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +  EM+  GL+ ++ T+ +I++E CK   +   ++LL  M + G  P+
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPN 415



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 49/112 (43%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+ L K+   K      +     G   ++  +NI +H  C + ++  A  +F  +   G
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +I+  +  +   L   M    V P     S++++ L K
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCK 218



 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V Y  +I GLC+EG    A+++  +M    + P + TY  +I+  C   D      
Sbjct: 343 RXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSK 402

Query: 73  LFIEMMDRGLQSDVVT 88
           L  EM   G   +VVT
Sbjct: 403 LLKEMQRXGYVPNVVT 418


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+IDG  K G +D++  LF +MK     P+V+TYN+LI+ FC       A   
Sbjct: 165 PDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEF 224

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM D+ L+ +V++++ ++D LCK   M  A +    M + G+ P+ F       Y  L
Sbjct: 225 FREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEF------TYSSL 278

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  CK G L  A  L+  + +  +  N+VTY   +  LC +  M++A +LF  M   GV
Sbjct: 279 IDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGV 338

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PN   +T L+   I+     K +EL   M ++++ P   +   IV
Sbjct: 339 TPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIV 384



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN ++Y+T+ID LCKEG +  A + F+ M    + PN  TY+SLI   C A +  EA  
Sbjct: 234 KPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFM 293

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+   +  ++VT+  ++D LC+   M+EA  L   M + GV P      N+ AY  
Sbjct: 294 LADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTP------NLQAYTA 347

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K+  +  A EL   +    + P+++ +   +  LC++ ++++   +  +M+  G
Sbjct: 348 LIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESG 407

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +  N VI+TTLM ++ +    ++ I LL  M              ++D L K  +   +I
Sbjct: 408 IGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAI 467

Query: 253 PQFNR 257
             F R
Sbjct: 468 YYFGR 472



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 6/230 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P    ++ +   L + G ++ A + FL+M    + P   + N+ +H    A +G+ +
Sbjct: 57  VCVPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLS 116

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              F +M+  G+   V T+N+++  +CK   M  A  L + M + G+ PD      IV Y
Sbjct: 117 RDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPD------IVTY 170

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDG  KIG L  +  L + +   G  P+V+TYN  I++ C  + M +A + F +M+ 
Sbjct: 171 NTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKD 230

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           K + PN + ++TL+ +  ++      I+    M +  ++P     S ++D
Sbjct: 231 KDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLID 280



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 6/226 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTY T++DGLC+EG +++A+ELF  M    + PN+  Y +LIHG       ++A  LF
Sbjct: 306 NIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELF 365

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM ++ ++ D++ +  I+  LC   K++E   ++  M + G+        N V Y  L+
Sbjct: 366 NEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGA------NPVIYTTLM 419

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D   K G    A  L + +   G    VVT+   I  LC    + +A   F  M    + 
Sbjct: 420 DAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQ 479

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           PN  ++T L+    + N      +L   M  +N++P     + ++D
Sbjct: 480 PNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMID 525



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ + + TI+ GLC E  +++ K +  +MK+  I  N V Y +L+  +  A +  EA  
Sbjct: 374 KPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAIN 433

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM D G +  VVTF  ++D LCK   + EA          G  PD   + N+  Y  
Sbjct: 434 LLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYF------GRMPDHDLQPNVAVYTA 487

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK   + +A++L   +    ++P+ + Y   I          +A ++   M   G
Sbjct: 488 LIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMG 547

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +  +   +T+L+    +  +  +  + L  M  + ++P
Sbjct: 548 IELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIP 585



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 8/214 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+   P  V Y T++D   K G   +A  L  +M+D      VVT+ +LI G C   
Sbjct: 404 KESGIGANP--VIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRG 461

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA Y F  M D  LQ +V  +  ++D LCKN  + +A +L D M    + PD     
Sbjct: 462 LVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDK---- 517

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             +AY  +IDG  K G  + A  +   +   G+  ++  Y   +  L    Q+ +A    
Sbjct: 518 --IAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFL 575

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            +M  KG+ P+  + T L+          + IEL
Sbjct: 576 AEMIGKGIIPDETLCTRLLRKHYELGNIDEAIEL 609



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 16/161 (9%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y  +IDGLCK   +  AK+LF +M+D+N+ P+ + Y ++I G     +  EA  
Sbjct: 479 QPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALN 538

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFCEINIVAYG 131
           +  +MM+ G++ D+  +  ++  L +  ++ +A + L  MI  G+ PD   C        
Sbjct: 539 MRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTR------ 592

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLM--------PNVVT 164
            L+    ++G +  A EL   L   GL+        PN+ T
Sbjct: 593 -LLRKHYELGNIDEAIELQNELVEKGLIHGNSNPAVPNIQT 632


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 107/191 (56%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A +L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 305 IDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 419 VPSVVTYNVLM 429



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 145 FNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVTFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AH L  +M VKG+ P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 319 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALIS 360



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDK------ITYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L +A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 323 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P A   ++I++   K 
Sbjct: 348 IRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   ++      + T   ++              
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWG 128

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 280



 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 12/213 (5%)

Query: 44  DENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRK- 101
           + N    + +Y ++IH  C     +EA+ L   ++ R G  S    F  I++     R  
Sbjct: 12  NSNFRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETRGTQRSD 71

Query: 102 MDEATRLLDLMIQGGVRPDAF-C---------EINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +   + L+   ++ G   DA  C          + I     +++ L K+   K      +
Sbjct: 72  IYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYE 131

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G   ++  +NI +H  C D  +  A  +F  +   G+ P+ V + TLM  +IR  
Sbjct: 132 EILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 191

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  +   L  +M    V P     S++++ L K
Sbjct: 192 DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224



 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 128/281 (45%), Gaps = 64/281 (22%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYNTI+ GLCK G V  A++L   M ++N+ P++V+YN+LI+G+    +  EA  L
Sbjct: 305 PTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLL 364

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG----------------- 116
           F E+  R L   VVT+N ++D LC+   +D A RL D MI+ G                 
Sbjct: 365 FAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCK 424

Query: 117 ------------------VRPDAFCEI-----------------------------NIVA 129
                             ++PD F  I                             +++ 
Sbjct: 425 MGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLIT 484

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y   IDGL K+G LK A EL + +   GL+P+ VTY   IHA      + KA  LFL+M 
Sbjct: 485 YNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEML 544

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            KG+ P+ V +T L+ S+  +      I     M ++ V P
Sbjct: 545 SKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHP 585



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 117/232 (50%), Gaps = 8/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +++GL   G +++AKEL   M    +  +V TY+ LI G+C      EA 
Sbjct: 233 CSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEAS 292

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ RG    VVT+N IM  LCK  ++ +A +LLD+M+   + PD      +V+Y 
Sbjct: 293 RLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPD------LVSYN 346

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G  ++G +  A  L   L    L P+VVTYN  I  LC    +D A  L  +M   
Sbjct: 347 TLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKH 406

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP--YASILSIIVDL 241
           G  P+   FTT +  F +        EL   M  R + P  +A I  I+ +L
Sbjct: 407 GPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGEL 458



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYNT++D  CK+G V +A +L  QM+    +PN VTYN L++G  ++ +  +A+ L
Sbjct: 200 PTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKEL 259

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  GL+  V T++ ++   C+  +++EA+RL + M+  G  P       +V Y  +
Sbjct: 260 IQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVP------TVVTYNTI 313

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK G++ +AR+L   +    LMP++V+YN  I+       + +A  LF ++  + +
Sbjct: 314 MYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSL 373

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           AP+ V + TL+    R  +    + L   M K    P
Sbjct: 374 APSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDP 410



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 125/281 (44%), Gaps = 64/281 (22%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+IDGLC+ G +D A  L  +M     +P+V T+ + + GFC   +   A+ L
Sbjct: 375 PSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKEL 434

Query: 74  FIEMMDRGLQSD-----------------------------------VVTFNVIMDELCK 98
           F EM++RGLQ D                                   ++T+NV +D L K
Sbjct: 435 FDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHK 494

Query: 99  NRKMDEATRLLDLMIQGGVRPDA----------------------FCEI-------NIVA 129
              + EA+ L+  M+  G+ PD                       F E+       ++V 
Sbjct: 495 LGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVT 554

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI      G+LK A      +   G+ PNV+TYN  I+ LC   +MD+A++ F +M+
Sbjct: 555 YTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQ 614

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            KG++PN   +T L+          + + L + M  R + P
Sbjct: 615 AKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQP 655



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 96/191 (50%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN  IDGL K G + +A EL  +M    + P+ VTY S+IH    A    +A  L
Sbjct: 480 PDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAL 539

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+EM+ +G+   VVT+ V++       ++  A      M + GV P      N++ Y  L
Sbjct: 540 FLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHP------NVITYNAL 593

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK+ K+  A      +   G+ PN  TY I I+  CN     +A  L+ DM  + +
Sbjct: 594 INGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREI 653

Query: 194 APNCVIFTTLM 204
            P+     +L+
Sbjct: 654 QPDSCTHRSLL 664



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A+E++  M +  I P VVTYN+++  FC      EA  L  +M   G   + VT+NV
Sbjct: 183 IDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNV 242

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++ L  + +M++A  L+  M++ G+      E+++  Y  LI G C+ G+++ A  L +
Sbjct: 243 LVNGLSHSGEMEQAKELIQDMLRLGL------EVSVYTYDPLIRGYCEKGQIEEASRLGE 296

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G +P VVTYN  ++ LC   ++  A  L   M  K + P+ V + TL+  + R  
Sbjct: 297 EMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLG 356

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              +   L   +  R++ P     + ++D L +
Sbjct: 357 NIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCR 389



 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 6/171 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY +II      G + KA+ LFL+M  + I P+VVTY  LIH +        A   
Sbjct: 515 PDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILH 574

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM ++G+  +V+T+N +++ LCK RKMD+A      M   G+ P+ +       Y  L
Sbjct: 575 FFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKY------TYTIL 628

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           I+  C +G  + A  L + +    + P+  T+   +  L  D ++     L
Sbjct: 629 INENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNKDYKLHVVRHL 679



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 1/103 (0%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN +I+GLCK   +D+A   F +M+ + I+PN  TY  LI+  C      EA  L
Sbjct: 585 PNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRL 644

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           + +M+DR +Q D  T   ++  L K+ K+    R L+ +I  G
Sbjct: 645 YKDMLDREIQPDSCTHRSLLKHLNKDYKL-HVVRHLENVIAAG 686


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D N+A  L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+ +C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGH 418

Query: 194 APNCVIFTTLM 204
           AP+ V +  LM
Sbjct: 419 APSVVTYNVLM 429



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N +    CKEG +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M 
Sbjct: 145 FNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMH 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+  DV T++V+++ LCK  KMD A  L D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVP------NGVTFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    +++AHDL  +M +KG+ P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKI 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 360



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+  +L   M    + P+V TY+ LI+G C  +  + A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G L  A +L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    +++R M    + P     ++I++ + K 
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKK 400



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 88/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++    CK   +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L    +L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 280



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 6/124 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+IDG CKEG +D A E   +M  ENI  + V Y +LI G C      +AE 
Sbjct: 314 KPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEK 373

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  GL+ D  T+ +I++E+CK   + + ++LL  M   G  P      ++V Y  
Sbjct: 374 MMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAP------SVVTYNV 427

Query: 133 LIDG 136
           L++G
Sbjct: 428 LMNG 431



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 49/112 (43%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      +     G   ++  +NI  H  C +  +  A  +F  +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWG 172

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +  +L  +M    V P     S++++ L K
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCK 224


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 6/241 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN++TYN ++ G CK G ++ AK LF  +++ +   ++ +YN  + G        EAE 
Sbjct: 288 RPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAET 347

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+D+G+   + ++N++MD LCK   + +A  ++ LM + GV PDA      V YGC
Sbjct: 348 VLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDA------VTYGC 401

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G C +GK+  A+ L Q + R   +PN  T NI +H+L N  ++ +A +L   M  KG
Sbjct: 402 LLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKG 461

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
              + V    ++       E  K IE+++ M         ++ +  + L+  + I  N +
Sbjct: 462 YGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCL 521

Query: 253 P 253
           P
Sbjct: 522 P 522



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 33/264 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  T+  ++ G CK G  DK  EL   M+   + PN V YN+++  FC     +++E
Sbjct: 178 CKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSE 237

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM----IQGGVRPDA------ 121
            L  +M + GL  D+VTFN  +  LCK  K+ +A+R+   M      G  RP++      
Sbjct: 238 KLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLM 297

Query: 122 ---FCEINIV--------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              FC++ ++                    +Y   + GL + GK   A  + + +   G+
Sbjct: 298 LKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGI 357

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P++ +YNI +  LC    +  A  +   M+  GV+P+ V +  L+  +    +      
Sbjct: 358 GPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKS 417

Query: 219 LLRSMDKRNVMPYASILSIIVDLL 242
           LL+ M + N +P A   +I++  L
Sbjct: 418 LLQEMMRNNCLPNAYTCNILLHSL 441



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 17/234 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  ++ G C  G VD AK L  +M   N  PN  T N L+H        +EAE L
Sbjct: 394 PDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEEL 453

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM-IQG------------GVRPD 120
             +M ++G   D VT N+I+D LC + ++D+A  ++  M + G            G+  D
Sbjct: 454 LRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDD 513

Query: 121 AFCEIN----IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           +  E N    ++ Y  L++GLCK G+   A+ L   +    L P+ + YNI IH  C   
Sbjct: 514 SLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQG 573

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++  A  +  DME KG   +   + +L+     KN+  ++  L+  M ++ + P
Sbjct: 574 KISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISP 627



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 16/257 (6%)

Query: 4   GNREFGVV--------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN 55
           GN   G+V        C P+ +TY+T+++GLCK G   +AK LF +M  E + P+ + YN
Sbjct: 504 GNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYN 563

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
             IH FC     + A  +  +M  +G    + T+N ++  L    ++ E   L+D M + 
Sbjct: 564 IFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREK 623

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G+ P      NI  Y   I  LC+ GK+++A  L   + +  + PNV ++   I A C  
Sbjct: 624 GISP------NICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKV 677

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS-MDKRNVMPYASI 234
              D A ++F +  V        +++ +    +   +  K  ELL + +D+   +     
Sbjct: 678 PDFDMAQEVF-ETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLY 736

Query: 235 LSIIVDLLVKNEISLNS 251
             ++V L  K+E+ + S
Sbjct: 737 KDLVVSLCKKDELEVAS 753



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 101/201 (50%), Gaps = 10/201 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP    YN +++   +E  V+    L+  M    I+P   T+N LI   C ++  + A  
Sbjct: 109 KPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARE 168

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM ++G + +  TF +++   CK    D+   LL+ M   GV P      N V Y  
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLP------NKVVYNT 222

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK- 191
           ++   C+ G+  ++ +L + +   GL+P++VT+N  I ALC + ++  A  +F DME+  
Sbjct: 223 IVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDE 282

Query: 192 --GVA-PNCVIFTTLMPSFIR 209
             G+  PN + +  ++  F +
Sbjct: 283 YLGLPRPNSITYNLMLKGFCK 303



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 8/227 (3%)

Query: 21  TIIDGLCKEGFVDKA--KELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +++    K   +DKA  +  F++ +     P +  YN L+             +L+ +M+
Sbjct: 80  SVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIRERRVEFVSWLYKDMV 139

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+  +  TFN+++  LC +  +D A  L D M + G +P+ F       +G L+ G C
Sbjct: 140 LCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEF------TFGILVRGYC 193

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G      EL  S+   G++PN V YN  + + C + + D +  L   M  +G+ P+ V
Sbjct: 194 KAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIV 253

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            F + + +  ++ +      +   M+    +      SI  +L++K 
Sbjct: 254 TFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKG 300



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 46/203 (22%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+   PN  TYNT I  LC+ G V+ A  L  +M  +NI PNV ++  LI  FC   
Sbjct: 621 REKGI--SPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVP 678

Query: 66  DGNEAEYLFI----------------------------------EMMDRGLQSDVVTFNV 91
           D + A+ +F                                    ++DRG +     +  
Sbjct: 679 DFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKD 738

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++  LCK  +++ A+ +L  MI  G   D        A   +IDGL K+G  K A   ++
Sbjct: 739 LVVSLCKKDELEVASGILHKMIDKGYGFDP------AALMPVIDGLGKMGNKKEANNFAE 792

Query: 152 ---SLTRAGLMPNVVTYNIT-IH 170
               +   G + N V  N T IH
Sbjct: 793 KMMEMASVGEVANKVDPNATDIH 815


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +I G+CK G ++ A+ L L+M+ + ++ N+V +N+ + G+C     +EA  L
Sbjct: 355 PNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRL 414

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  +G+ +DV T+N++ + LCK  + DEA  +L+ M++ GV+P      N+V +   
Sbjct: 415 QAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKP------NVVTFTMF 468

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CK G L  A  L + + + G +PN++TYN  I A C  E++ +AH +  +M  KG+
Sbjct: 469 IEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGL 528

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASILS 236
            P+   +++L+          + ++L   M      RNV  Y S++S
Sbjct: 529 LPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMIS 575



 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +   Y+++I    + G + +A  LF +M   +I PN  TY +LI G C A     AE L 
Sbjct: 321 DVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILL 380

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           +EM  +G+  ++V FN  MD  C+  KMDEA RL  +M + G+  D F       Y  L 
Sbjct: 381 LEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVF------TYNILA 434

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK+ +   A+ +  S+   G+ PNVVT+ + I   C +  + +A  LF DME KG  
Sbjct: 435 NGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEV 494

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           PN + + TL+ ++ +K +  +  ++   M  + ++P    Y+S++
Sbjct: 495 PNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLI 539



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 115/215 (53%), Gaps = 7/215 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TYN + +GLCK    D+AK +   M ++ + PNVVT+   I  +C   +  EAE LF
Sbjct: 426 DVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLF 485

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M  +G   +++T+N ++D  CK  K+ +A ++   MI  G+ PD +       Y  LI
Sbjct: 486 RDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLY------TYSSLI 539

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C +G++  A +L   +   G+  NV TY   I  L  + + D+A  L+ +M   G+ 
Sbjct: 540 HGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLI 599

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           P+  +FT+L+ SF  K  T   +++ ++ D  +V+
Sbjct: 600 PDDRVFTSLVGSF-HKPLTHAGLDIQKASDSDSVL 633



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TY+ +I      G +++A+++F +M+++NI  +V  Y+S+I       +   A  LF
Sbjct: 286 SVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALF 345

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  R +  +  T+  ++  +CK  +M+ A  LL  M   GV      ++N+V +   +
Sbjct: 346 DEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGV------DLNLVIFNTTM 399

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG C+ GK+  A  L   + + G+  +V TYNI  + LC   + D+A  +   M  KGV 
Sbjct: 400 DGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVK 459

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           PN V FT  +  + ++   ++   L R M+K+  +P     + ++D   K E
Sbjct: 460 PNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKE 511



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 108/208 (51%), Gaps = 7/208 (3%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80
           +ID LC+ G V+KAKEL  +M  + I  PNV TYN+L++ +    D    + +   M   
Sbjct: 222 VIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKE 281

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
            +   V T+++++     +  ++EA ++ + M +  +      E+++  Y  +I    ++
Sbjct: 282 QVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNI------EMDVYVYSSMISWSRRL 335

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G +K A  L   +++  ++PN  TY   I  +C   QM+ A  L L+M+ KGV  N VIF
Sbjct: 336 GNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIF 395

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNV 228
            T M  + R+ +  + + L   M+K+ +
Sbjct: 396 NTTMDGYCRRGKMDEALRLQAIMEKKGI 423



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 6/149 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VT+   I+  CKEG + +A+ LF  M+ +   PN++TYN+LI  +C      +A  
Sbjct: 459 KPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHK 518

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+++GL  D+ T++ ++   C   ++DEA +L + M   G+        N+  Y  
Sbjct: 519 IKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITR------NVATYTS 572

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +I GL K G+   A +L   + + GL+P+
Sbjct: 573 MISGLSKEGRADEAFKLYDEMMKIGLIPD 601



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+++I G C  G VD+A +LF +M+ + I  NV TY S+I G       +EA  L
Sbjct: 530 PDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKL 589

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCK 98
           + EMM  GL  D   F  ++    K
Sbjct: 590 YDEMMKIGLIPDDRVFTSLVGSFHK 614



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 105/227 (46%), Gaps = 15/227 (6%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN---DGNEAEYLF 74
           T  +I++GL  +  ++      + + DE  +  V  +  ++   C  N   D     Y +
Sbjct: 111 TMKSILNGLVTDSDIECPVSSIVDLVDEFESHFVEKFCDMLFRVCSDNRLFDETIRVYDY 170

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           +E  ++GL  +  +  V++  L +  ++D   R    M++     + F EI + +   +I
Sbjct: 171 VE--EKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVES----NKF-EIRVQSLTLVI 223

Query: 135 DGLCKIGKLKNARELSQSLTRAGLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           D LC+ G+++ A+EL   +   G++ PNV TYN  ++A    +      ++   ME + V
Sbjct: 224 DVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQV 283

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN----VMPYASILS 236
             +   ++ L+  +    +  +  ++   M ++N    V  Y+S++S
Sbjct: 284 VFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMIS 330


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 109/190 (57%), Gaps = 6/190 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P++ TY T+I+GLC+ G + +AKELF +M+ +  +P VVTY SLIHG C + D + A 
Sbjct: 187 CPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAI 246

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +G++ +V T++ +MD  CK+     A  LLD+M+     P      N++ Y 
Sbjct: 247 RLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLP------NMITYS 300

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK GKL+ A E+   +   GL P+   Y   I   C+  +  +A +   +M + 
Sbjct: 301 TLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLG 360

Query: 192 GVAPNCVIFT 201
           G++PN + ++
Sbjct: 361 GISPNRLTWS 370



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 109/203 (53%), Gaps = 9/203 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           RE G+   P+  + N +I  LCK  G +D A  +F +M +    P+  TY +LI+G C  
Sbjct: 147 REMGI--PPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRL 204

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA+ LF EM  +     VVT+  ++  LC+++ +D A RLL+ M   G++P     
Sbjct: 205 GKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKP----- 259

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+  Y  L+DG CK G    A EL   +     +PN++TY+  +H LC + ++ +A ++
Sbjct: 260 -NVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEI 318

Query: 185 FLDMEVKGVAPNCVIFTTLMPSF 207
              M+++G+ P+  ++  ++  F
Sbjct: 319 LDRMKLQGLRPDAGLYGKIISGF 341



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 108/226 (47%), Gaps = 7/226 (3%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A  +F +MK+    P+  +Y ++       N    A   +  M + G+   V + NV++ 
Sbjct: 104 AVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIK 163

Query: 95  ELCKNR-KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
            LCKN   MD A R+   M   G  PD++       YG LI+GLC++GK+  A+EL + +
Sbjct: 164 ALCKNSGTMDAALRIFREMPNRGCPPDSY------TYGTLINGLCRLGKIGEAKELFKEM 217

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
                 P VVTY   IH LC  + +D A  L  +M  KG+ PN   +++LM    +   +
Sbjct: 218 ETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCS 277

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           S+ +ELL  M  R  +P     S +V  L K      ++   +R K
Sbjct: 278 SRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMK 323



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 9/231 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NE 69
           C+P+  +Y T+   L  E  +  A   +  M++  I P+V + N LI   C  N G  + 
Sbjct: 116 CEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALC-KNSGTMDA 174

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  +F EM +RG   D  T+  +++ LC+  K+ EA  L   M      P       +V 
Sbjct: 175 ALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSP------TVVT 228

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI GLC+   L +A  L + +   G+ PNV TY+  +   C      +A +L   M 
Sbjct: 229 YTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMV 288

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +   PN + ++TL+    ++ +  + +E+L  M  + + P A +   I+ 
Sbjct: 289 SRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIIS 339



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 37/209 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY+T++ GLCKEG + +A E+  +MK + + P+   Y  +I GFC           
Sbjct: 294 PNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFC----------- 342

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGC 132
                                ++C   K  EA   LD M+ GG+ P+     +++  +  
Sbjct: 343 ---------------------DIC---KFHEAANFLDEMVLGGISPNRLTWSLHVRIHNI 378

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLC       A +L  S+   G+  +  T++  ++  CN   + KA  L  +M + G
Sbjct: 379 VVQGLC-TEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDG 437

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLR 221
             P+ V +  ++ +F  + +  +  EL++
Sbjct: 438 CIPDEVTWNAVVCAFWDRRKVRESAELVQ 466



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 10/110 (9%)

Query: 14  PNTVTY-------NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           PN +T+       N ++ GLC E   ++A +L+L M+   I+ +  T++SL++ FC   D
Sbjct: 364 PNRLTWSLHVRIHNIVVQGLCTE-HPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGD 422

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL--LDLMIQ 114
            ++A +L  EM+  G   D VT+N ++      RK+ E+  L  ++LM++
Sbjct: 423 LHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELVQVELMVE 472


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 7/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + YN ++DGLCKEG V +A  L  +M  + I  +V TYNSLIHGFC A     A  
Sbjct: 193 RPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVR 252

Query: 73  LFIEM-MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           L  EM M   ++ DV TFN+++D LCK   + EA  +  LMI+ G+ PD      +V+  
Sbjct: 253 LLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPD------VVSCN 306

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++G C  G +  A+E+   +   G +PNV++Y+  I+  C  + +D+A  L  +M  +
Sbjct: 307 ALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQR 366

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            + P+ V +  L+    +        +L+ +M      P     ++++D  +K E
Sbjct: 367 NLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRE 421



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 126/230 (54%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+N ++D LCK G V +A+ +F  M    + P+VV+ N+L++G+C     +EA+ 
Sbjct: 264 RPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKE 323

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M++RG   +V++++ +++  CK + +DEA RLL  M Q  + PD       V Y C
Sbjct: 324 VFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDT------VTYNC 377

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGL K G++    +L +++  +G  P+++TYN+ +      E +DKA  LF  +   G
Sbjct: 378 LLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTG 437

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           ++PN   +  L+    +        E+ + +  +   P     +I+++ L
Sbjct: 438 ISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGL 487



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 7/230 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y T+I+GLCK G    A EL  +M+   + PN++ YN ++ G C      EA  L  E
Sbjct: 162 VCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSE 221

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIVAYGCLID 135
           M+ +G+  DV T+N ++   C   +   A RLL+ M+ +  VRPD +       +  L+D
Sbjct: 222 MVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVY------TFNILVD 275

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
            LCK+G +  AR +   + + GL P+VV+ N  ++  C    M +A ++F  M  +G  P
Sbjct: 276 ALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLP 335

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           N + ++TL+  + +     + + LL  M +RN++P     + ++D L K+
Sbjct: 336 NVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKS 385



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 6/197 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN ++Y+T+I+G CK   VD+A  L  +M   N+ P+ VTYN L+ G   +        L
Sbjct: 335 PNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDL 394

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G   D++T+NV++D+  K   +D+A  L   ++  G+ P      NI  Y  L
Sbjct: 395 VEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISP------NIRTYNIL 448

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G++K A+E+ Q L+  G  PN+ TYNI I+ L  +  +D+A  L L+M   G 
Sbjct: 449 IDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGF 508

Query: 194 APNCVIFTTLMPSFIRK 210
            PN V F  L+ + + K
Sbjct: 509 PPNAVTFDPLVRALLEK 525



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 8/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDGNEAEY 72
           P+ V+ N ++  + K         L   +  +    P++VT +  I+   +      A  
Sbjct: 53  PSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSIFINSLTHLGQMGLAFS 112

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++ RG   D  T   +M  LC   +  EA  L D  +  G   D  C      YG 
Sbjct: 113 VMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVC------YGT 166

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK+GK ++A EL + + + G+ PN++ YN+ +  LC +  + +A  L  +M  KG
Sbjct: 167 LINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKG 226

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD-KRNVMPYASILSIIVDLLVK 244
           +  +   + +L+  F    +    + LL  M  K +V P     +I+VD L K
Sbjct: 227 ICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCK 279



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 7/219 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT +  I+ L   G +  A  +  ++       +  T  +L+ G C      EA  
Sbjct: 88  KPSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALN 147

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+   + +G   D V +  +++ LCK  K  +A  LL  M +GGVRP      N++ Y  
Sbjct: 148 LYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRP------NLIMYNM 201

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK- 191
           ++DGLCK G +  A  L   +   G+  +V TYN  IH  C   Q   A  L  +M +K 
Sbjct: 202 VVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKE 261

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V P+   F  L+ +  +    ++   +   M KR + P
Sbjct: 262 DVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEP 300


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 10/220 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + VTY T+I GLC    +D A EL  +M    + PNVV Y+ L+ G+C +    +   
Sbjct: 155 RADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGK 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M  RG++ DV+ F  ++D+LCK  K  +A ++ D+M+Q G+ P      N+V Y  
Sbjct: 215 VFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEP------NVVTYNV 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+ LCK G ++ A  L + +   G+ P+VVTYN  I  L    +MD+A   FL+  ++G
Sbjct: 269 LINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMS-FLEEMIQG 327

Query: 193 ---VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              V P+ V F +++    +    ++ +++   M +R  M
Sbjct: 328 DTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCM 367



 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +RE     +PN V+Y T++ GLC      +A  L   M+   +  +VVTY +LI G C A
Sbjct: 112 SREAHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDA 171

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           ++ + A  L  EM   G+Q +VV ++ ++   C++ +  +  ++ + M + G++PD    
Sbjct: 172 SELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPD---- 227

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ +  LID LCK GK   A ++   + + GL PNVVTYN+ I++LC +  + +A  L
Sbjct: 228 --VIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTL 285

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             +M+ KGVAP+ V + TL+       E  + +  L  M
Sbjct: 286 RKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEM 324



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 116/216 (53%), Gaps = 4/216 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ + +  +ID LCKEG   KA ++   M    + PNVVTYN LI+  C      EA  
Sbjct: 225 KPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALT 284

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM D+G+  DVVT+N ++  L    +MDEA   L+ MIQG    D   E ++V +  
Sbjct: 285 LRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQG----DTVVEPDVVTFNS 340

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLCKIG++  A ++ + +   G M N+VTYN  I       ++  A +L  ++ + G
Sbjct: 341 VIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISG 400

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           + P+   ++ L+  F +  E  +  + L +M +R +
Sbjct: 401 LEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGI 436



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 11/221 (4%)

Query: 15  NTVTYNTIIDGLCKEG--FVDKAKELFLQMKDEN---INPNVVTYNSLIHGFCYANDGNE 69
           + V+YNT++  LC+ G   + +A+ L + M  E      PN V+Y +++ G C +    E
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L   M   G+++DVVT+  ++  LC   ++D A  LLD M   GV+P      N+V 
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQP------NVVV 195

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y CL+ G C+ G+ ++  ++ + ++R G+ P+V+ +   I  LC + +  KA  +   M 
Sbjct: 196 YSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMV 255

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +G+ PN V +  L+ S  ++    + + L + MD + V P
Sbjct: 256 QRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAP 296



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 28/259 (10%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           V +P+ VT+N++I GLCK G + +A ++   M +     N+VTYN LI GF   +    A
Sbjct: 330 VVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMA 389

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-------- 122
             L  E+   GL+ D  T++++++   K  ++D A + L  M Q G++ + F        
Sbjct: 390 MNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAA 449

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C ++ +AY  +I G CK G +K  ++L Q +   GL P+ 
Sbjct: 450 MCQQGMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDA 509

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTY++ I+       +++A  +   M   G  P+  +F +L+  +  + +T KV++L+  
Sbjct: 510 VTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHE 569

Query: 223 MDKRNVMPYASILSIIVDL 241
           M  +NV     I+S I+ L
Sbjct: 570 MRAKNVAFDPKIISTIIRL 588


>gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible
           protein-like proteins; contains similarity to Pfam
           family PF01535 (Domain of unknown function),
           score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
 gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +IDG C+ G ++ AKE+  +MK++ I PNVVT N+++ G C  +  N A 
Sbjct: 402 CVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAV 461

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F++M   G++ +VVT+  ++   C    +++A    + M++ G  PDA        Y 
Sbjct: 462 VFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDA------KIYY 515

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLC++ +  +A  + + L   G   +++ YN+ I   C+    +K +++  DME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G  P+ + + TL+  F +  +   V  ++  M +  + P  +    ++D
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVID 624



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 13/242 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDG 67
           G V K +++ +NT+IDGLCK G + +A+EL ++MK +E   PN VTYN LI G+C A   
Sbjct: 363 GNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKL 422

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A+ +   M +  ++ +VVT N I+  +C++  ++ A      M + GV+       N+
Sbjct: 423 ETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKG------NV 476

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI   C +  ++ A    + +  AG  P+   Y   I  LC   Q+ + HD    
Sbjct: 477 VTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLC---QVRRDHDAIRV 533

Query: 188 MEV---KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +E     G + + + +  L+  F  KN   KV E+L  M+K    P +   + ++    K
Sbjct: 534 VEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGK 593

Query: 245 NE 246
           ++
Sbjct: 594 HK 595



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 30/248 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VT NTI+ G+C+   ++ A   F+ M+ E +  NVVTY +LIH  C  ++  +A Y
Sbjct: 438 KPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMY 497

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------FC 123
            + +M++ G   D   +  ++  LC+ R+  +A R+++ + +GG   D          FC
Sbjct: 498 WYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFC 557

Query: 124 EIN--------------------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           + N                     + Y  LI    K    ++   + + +   GL P V 
Sbjct: 558 DKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVT 617

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKG-VAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           TY   I A C+  ++D+A  LF DM +   V PN VI+  L+ +F +     + + L   
Sbjct: 618 TYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEE 677

Query: 223 MDKRNVMP 230
           M  + V P
Sbjct: 678 MKMKMVRP 685



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 16/222 (7%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN------INPNVVTYNSLIHGFCY 63
           V  +P+ VT   +I+ LCK   VD+A E+F QM+ +       I  + + +N+LI G C 
Sbjct: 323 VKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCK 382

Query: 64  ANDGNEAEYLFIEM-MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                EAE L + M ++     + VT+N ++D  C+  K++ A  ++  M +  ++P   
Sbjct: 383 VGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKP--- 439

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V    ++ G+C+   L  A      + + G+  NVVTY   IHA C+   ++KA 
Sbjct: 440 ---NVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAM 496

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFI---RKNETSKVIELLR 221
             +  M   G +P+  I+  L+       R ++  +V+E L+
Sbjct: 497 YWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLK 538



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 36/262 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+V     I  LCK    + A ++   +           +N+L+       D +    L
Sbjct: 257 PNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDL 316

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM---------------IQGGVR 118
            ++M +  ++ DVVT  ++++ LCK+R++DEA  + + M               I     
Sbjct: 317 VLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTL 376

Query: 119 PDAFCEI---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
            D  C++                     N V Y CLIDG C+ GKL+ A+E+   +    
Sbjct: 377 IDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDE 436

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PNVVT N  +  +C    ++ A   F+DME +GV  N V + TL+ +    +   K +
Sbjct: 437 IKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAM 496

Query: 218 ELLRSMDKRNVMPYASILSIIV 239
                M +    P A I   ++
Sbjct: 497 YWYEKMLEAGCSPDAKIYYALI 518



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 7/213 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y  +I GLC+      A  +  ++K+   + +++ YN LI  FC  N+  +  
Sbjct: 507 CSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVY 566

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M   G + D +T+N ++    K++  +   R+++ M + G+ P       +  YG
Sbjct: 567 EMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDP------TVTTYG 620

Query: 132 CLIDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            +ID  C +G+L  A +L + +   + + PN V YNI I+A        +A  L  +M++
Sbjct: 621 AVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           K V PN   +  L      K +   +++L+  M
Sbjct: 681 KMVRPNVETYNALFKCLNEKTQGETLLKLMDEM 713



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 6/214 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           DK   L+   K++NI   +V    LI  F      N++  L  E +D  +++  V  NV+
Sbjct: 134 DKLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQS-VLVYERLDSNMKNSQVR-NVV 191

Query: 93  MDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +D L +N  +D+A ++LD M+Q   V P      +IV +    + L    K+     L  
Sbjct: 192 VDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKERLLTEEKII---ALIS 248

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
             +  G+ PN V     I +LC + + + A D+  D+           F  L+    R  
Sbjct: 249 RFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNM 308

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + S++ +L+  MD+  + P    L I+++ L K+
Sbjct: 309 DISRMNDLVLKMDEVKIRPDVVTLGILINTLCKS 342


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 6/214 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYNT+IDGLCK G V +   LF +MK +  NP+V+TY+ LI GFC  +  N A 
Sbjct: 41  CLPDINTYNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMAC 100

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M+ +    DVVTF  +++  C    +D+A RLL+ ++     PD +       Y 
Sbjct: 101 TLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVY------TYT 154

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG CK+ ++  A  + + + +    PNVV Y   I A C+  +   A+ L  +M   
Sbjct: 155 SLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGN 214

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           GV PN + + +L+  F    +  +  ++L  +++
Sbjct: 215 GVQPNAITYRSLIGGFCGTGDLEEAHKMLERLER 248



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 6/195 (3%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
            I PN+VTYNSLIHGFC  N  +    L  EM   G   D+ T+N ++D LCK  ++ E 
Sbjct: 5   GIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEV 64

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
            RL       G     FC  +++ Y CLI G CK+ ++  A  L   + +   +P+VVT+
Sbjct: 65  NRLF------GEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTF 118

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
              +   CN   +D A  L  ++     +P+   +T+L+  F +     +   +L+ M K
Sbjct: 119 PTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAK 178

Query: 226 RNVMPYASILSIIVD 240
               P   I + ++D
Sbjct: 179 GECQPNVVIYTALID 193



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 30/177 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+ T+++G C  G VD A+ L  ++   + +P+V TY SL+ GFC      EA  +
Sbjct: 113 PDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRV 172

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
              M     Q +VV +  ++D  C   K   A +LL+ M+  GV+P+A            
Sbjct: 173 LKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCG 232

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
                              C+ ++ AY  ++DGLC+ G++  A EL +++ ++G  P
Sbjct: 233 TGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPP 289



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 37/92 (40%)

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +T  G+ PN+VTYN  IH  C    +D    L  +M   G  P+   + TL+    +   
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGR 60

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +V  L   M  +   P     S ++    K
Sbjct: 61  VPEVNRLFGEMKAKFCNPDVITYSCLIGGFCK 92


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 110/230 (47%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ + Y T+I GL + G +D A  +   MK      +   YN LI GFC     NEA  
Sbjct: 350 SPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYE 409

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM + GLQ DV T+N ++  LCK         LL  MI GG RP      ++V +G 
Sbjct: 410 LLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRP------SVVTFGT 463

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK+G++  A  + +S+  +G+ PN V YN  I  LC       A +LF +M  K 
Sbjct: 464 LIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKH 523

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           V  N   F  L+     KN   K  EL+  M +    P    + I+++ L
Sbjct: 524 VPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILMEWL 573



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 8/248 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKD--ENINPNVVTYNSLIHGFCYANDGNEAE 71
           PN VT NTI+ GLC  G V  A E F + +        N VTY++L+  F + N+   A 
Sbjct: 279 PNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAM 338

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+D G   D + +  ++  L +  ++D+A  +   M + G + DA       AY 
Sbjct: 339 ELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDA------KAYN 392

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C+  +L  A EL   +  AGL P+V TYN  +  LC         +L   M   
Sbjct: 393 ILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDG 452

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+ V F TL+  + +  +  + + + RSMD+  + P   I + ++D L K+  +  +
Sbjct: 453 GCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLA 512

Query: 252 IPQFNRQK 259
           I  F+  +
Sbjct: 513 IELFDEMR 520



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 16/218 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T  +NT++D L + G +    +LF  M+D ++ PNVVTY  L+ G C A    +A  +
Sbjct: 135 PDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSV 194

Query: 74  FIEMMDRGLQS----DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
              M   G +S    DVV  N I+D LCK  ++ +A +     ++  +R    C  N V 
Sbjct: 195 LDGM--SGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKF----VEERMRSVHGCAPNTVT 248

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y CL    C+ G +  A EL   + +  + PN VT N  +  LC   ++  A + F   E
Sbjct: 249 YNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFF--RE 306

Query: 190 VKGVAP----NCVIFTTLMPSFIRKNETSKVIELLRSM 223
            + V P    N V ++TL+ +F+  N     +EL   M
Sbjct: 307 KRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEM 344



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 6/140 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VT+ T+I G CK G +D+A  +F  M +  I PN V YN+LI   C + D + A 
Sbjct: 454 CRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAI 513

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM ++ + ++V TFN ++  L      ++A  L+DLM +G   PD +  I+I    
Sbjct: 514 ELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPD-YVTIDI---- 568

Query: 132 CLIDGLCKIGKLKNARELSQ 151
            L++ L  IG+    +   Q
Sbjct: 569 -LMEWLPVIGETDRLKHFMQ 587



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 10/180 (5%)

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           ++  + A +L   +       D   FN ++D L +   +   T+L   M    VRP    
Sbjct: 115 SSSADAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRP---- 170

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLT--RAGLMPNVVTYNITIHALCNDEQMDKA 181
             N+V YG L+ GLCK G++ +A  +   ++   + + P+VV  N  +  LC   ++ +A
Sbjct: 171 --NVVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQA 228

Query: 182 HDLFLDM--EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
                +    V G APN V +  L  +F R        EL+  M+K  V P A  L+ IV
Sbjct: 229 VKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIV 288


>gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460
 gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown
           function), score=340.5, E=1.9e-98, N=2 [Arabidopsis
           thaliana]
 gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana]
 gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana]
 gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +IDG C+ G ++ AKE+  +MK++ I PNVVT N+++ G C  +  N A 
Sbjct: 402 CVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAV 461

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F++M   G++ +VVT+  ++   C    +++A    + M++ G  PDA        Y 
Sbjct: 462 VFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDA------KIYY 515

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLC++ +  +A  + + L   G   +++ YN+ I   C+    +K +++  DME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G  P+ + + TL+  F +  +   V  ++  M +  + P  +    ++D
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVID 624



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 13/242 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDG 67
           G V K +++ +NT+IDGLCK G + +A+EL ++MK +E   PN VTYN LI G+C A   
Sbjct: 363 GNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKL 422

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A+ +   M +  ++ +VVT N I+  +C++  ++ A      M + GV+       N+
Sbjct: 423 ETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKG------NV 476

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD---L 184
           V Y  LI   C +  ++ A    + +  AG  P+   Y   I  LC   Q+ + HD   +
Sbjct: 477 VTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLC---QVRRDHDAIRV 533

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              ++  G + + + +  L+  F  KN   KV E+L  M+K    P +   + ++    K
Sbjct: 534 VEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGK 593

Query: 245 NE 246
           ++
Sbjct: 594 HK 595



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 16/222 (7%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN------INPNVVTYNSLIHGFCY 63
           V  +P+ VT   +I+ LCK   VD+A E+F QM+ +       I  + + +N+LI G C 
Sbjct: 323 VKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCK 382

Query: 64  ANDGNEAEYLFIEM-MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                EAE L + M ++     + VT+N ++D  C+  K++ A  ++  M +  ++P   
Sbjct: 383 VGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKP--- 439

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V    ++ G+C+   L  A      + + G+  NVVTY   IHA C+   ++KA 
Sbjct: 440 ---NVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAM 496

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFI---RKNETSKVIELLR 221
             +  M   G +P+  I+  L+       R ++  +V+E L+
Sbjct: 497 YWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLK 538



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 111/265 (41%), Gaps = 36/265 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+V     I  LCK    + A ++   +           +N+L+       D +    L
Sbjct: 257 PNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDL 316

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM---------------IQGGVR 118
            ++M +  ++ DVVT  ++++ LCK+R++DEA  + + M               I     
Sbjct: 317 VLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTL 376

Query: 119 PDAFCEI---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
            D  C++                     N V Y CLIDG C+ GKL+ A+E+   +    
Sbjct: 377 IDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDE 436

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PNVVT N  +  +C    ++ A   F+DME +GV  N V + TL+ +    +   K +
Sbjct: 437 IKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAM 496

Query: 218 ELLRSMDKRNVMPYASILSIIVDLL 242
                M +    P A I   ++  L
Sbjct: 497 YWYEKMLEAGCSPDAKIYYALISGL 521



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y  +I GLC+      A  +  ++K+   + +++ YN LI  FC  N+  +  
Sbjct: 507 CSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVY 566

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M   G + D +T+N ++    K++  +   R+++ M + G+ P       +  YG
Sbjct: 567 EMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDP------TVTTYG 620

Query: 132 CLIDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            +ID  C +G+L  A +L + +   + + PN V YNI I+A        +A  L  +M++
Sbjct: 621 AVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           K V PN   +  L      K +   +++L+  M +++  P    + I+++ L
Sbjct: 681 KMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERL 732



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 7/206 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + YN +I   C +   +K  E+   M+ E   P+ +TYN+LI  F    D    E +  +
Sbjct: 547 LAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQ 606

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLID 135
           M + GL   V T+  ++D  C   ++DEA +L  D+ +   V P      N V Y  LI+
Sbjct: 607 MREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNP------NTVIYNILIN 660

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
              K+G    A  L + +    + PNV TYN     L    Q +    L  +M  +   P
Sbjct: 661 AFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEP 720

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLR 221
           N +    LM      +E  K+ + ++
Sbjct: 721 NQITMEILMERLSGSDELVKLRKFMQ 746



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+++TYNT+I    K    +  + +  QM+++ ++P V TY ++I  +C   + +EA  
Sbjct: 578 KPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALK 637

Query: 73  LFIEMMDRGLQSDV----VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           LF +M   GL S V    V +N++++   K     +A  L + M    VRP      N+ 
Sbjct: 638 LFKDM---GLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRP------NVE 688

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            Y  L   L +  + +   +L   +      PN +T  I +  L   +++ K
Sbjct: 689 TYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVK 740



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 6/214 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           DK   L+   K++NI   +V    LI  F      N++  L  E +D  +++  V  NV+
Sbjct: 134 DKLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQS-VLVYERLDSNMKNSQVR-NVV 191

Query: 93  MDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +D L +N  +D+A ++LD M+Q   V P      +IV +    + L    K+     L  
Sbjct: 192 VDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKERLLTEEKII---ALIS 248

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
             +  G+ PN V     I +LC + + + A D+  D+           F  L+    R  
Sbjct: 249 RFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNM 308

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + S++ +L+  MD+  + P    L I+++ L K+
Sbjct: 309 DISRMNDLVLKMDEVKIRPDVVTLGILINTLCKS 342



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTV YN +I+   K G   +A  L  +MK + + PNV TYN+L         G     L
Sbjct: 650 PNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKL 709

Query: 74  FIEMMDRGLQSDVVTFNVIM------DELCKNRK 101
             EM+++  + + +T  ++M      DEL K RK
Sbjct: 710 MDEMVEQSCEPNQITMEILMERLSGSDELVKLRK 743


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 135/270 (50%), Gaps = 26/270 (9%)

Query: 4   GNREFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH 59
           G+R +G +       N  +YN II+  C+   +D A E F  M+   + PN+VT+N+LI+
Sbjct: 413 GDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLIN 472

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           G C     ++A  L   +++ GL+ D+ TF+ I+D LC+ ++ +EA      MI+ G+ P
Sbjct: 473 GHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINP 532

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           +A      V Y  LI  LC IG +  + +L + + + G+ P+  +YN  I   C   +++
Sbjct: 533 NA------VIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVE 586

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           KA  LF  M   G+ P+   ++  + +        +  ++  SM+     P + I ++I+
Sbjct: 587 KAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLII 646

Query: 240 DLLVKNE----------------ISLNSIP 253
            +LV+ E                ISLNSIP
Sbjct: 647 KILVQQEYVEEAQNIIERCRQKGISLNSIP 676



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 125/237 (52%), Gaps = 8/237 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ GV  K     Y  +I+ L K  + ++   ++ Q+  + +  NV +YN +I+ FC A 
Sbjct: 386 RKQGV--KAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAK 443

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A   F +M  RG+  ++VTFN +++  CK+  +D+A +LL+ +++ G++PD F   
Sbjct: 444 LMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIF--- 500

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               +  ++DGLC+I + + A E    +   G+ PN V YNI I +LC    + ++  L 
Sbjct: 501 ---TFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLL 557

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             M+ +G++P+   +  L+  F R N+  K  +L  SM +  + P     S  ++ L
Sbjct: 558 RRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEAL 614



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 116/271 (42%), Gaps = 46/271 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +I+G C    VD+A  +F  MKD  + PN  T  +L+HG     D ++A  L
Sbjct: 247 PNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVHGVFRCVDPSKALEL 306

Query: 74  FIEMMDRGLQSDVV----------------------------------------TFNVIM 93
             E +DR  + + V                                         FNV+M
Sbjct: 307 LSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMVVFLRRVLGRGGYFPGNSVFNVVM 366

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
             L K  ++ E   + +++ + GV+        I AY  LI+ L K    +    +   L
Sbjct: 367 ACLVKGAELRETCDVFEILRKQGVKA------GIGAYLALIEVLYKNEWREEGDRVYGQL 420

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              GL+ NV +YN+ I+  C  + MD A + F DM+V+GV PN V F TL+    +    
Sbjct: 421 ISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAI 480

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            K  +LL S+ +  + P     S IVD L +
Sbjct: 481 DKARKLLESLLENGLKPDIFTFSSIVDGLCQ 511



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 13/239 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T  YN +ID L K   +D A   F QM  +N   +  TYN+LIHG C     +EA  L
Sbjct: 177 PTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRL 236

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M D+G   +V T+ ++++  C   ++DEA  + + M   GV P+   E  + A   L
Sbjct: 237 VRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPN---EATVRA---L 290

Query: 134 IDGLCKIGKLKNARE-LSQSLTRAGLMPNV---VTYNITIHALCNDEQMDKAHDLFLD-- 187
           + G+ +      A E LS+ L R      V   +  +  ++ L N+  M K   +FL   
Sbjct: 291 VHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNS-MAKEMVVFLRRV 349

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +   G  P   +F  +M   ++  E  +  ++   + K+ V         ++++L KNE
Sbjct: 350 LGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNE 408



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 16/208 (7%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +  TYNT+I G+CK G VD+A  L  QMKD+   PNV TY  LI GFC A+  +EA 
Sbjct: 210 CVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAF 269

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI---QGGVRPDAFCEINIV 128
            +F  M D G+  +  T   ++  + +     +A  LL   +   Q   R       + V
Sbjct: 270 GVFETMKDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTV 329

Query: 129 AYGCLIDGLCKIGKLKNARE----LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            Y CL +          A+E    L + L R G  P    +N+ +  L    ++ +  D+
Sbjct: 330 LY-CLANN-------SMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDV 381

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           F  +  +GV      +  L+   + KNE
Sbjct: 382 FEILRKQGVKAGIGAYLALI-EVLYKNE 408



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 11/220 (5%)

Query: 30  GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89
           G  + +  +F Q+    ++P    YN+LI     +N  + A   F +M      +D  T+
Sbjct: 158 GLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTY 217

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149
           N ++  +CK   +DEA RL+  M   G  P      N+  Y  LI+G C   ++  A  +
Sbjct: 218 NTLIHGVCKVGVVDEALRLVRQMKDKGHFP------NVFTYTMLIEGFCIASRVDEAFGV 271

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL---FLDMEVKGVAPNCVIFTTLMPS 206
            +++  +G+ PN  T    +H +       KA +L   FLD E +    + ++    +  
Sbjct: 272 FETMKDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLY 331

Query: 207 FIRKNETSK--VIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +  N  +K  V+ L R + +    P  S+ ++++  LVK
Sbjct: 332 CLANNSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVK 371


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+ID LC  G + KA +L   M+      + +TYN++I G C      EAE
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M  +G+  + +TFN ++D LCK++K+D+A  L++ MI  G++P      N + Y 
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQP------NNITYN 535

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++   CK G +K A ++ +++T  G   +VVTY   I+ LC   +   A  +   M +K
Sbjct: 536 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 595

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+ P    +  ++ S  R+N     + L R M +    P A    I+
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIV 642



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYNT ++GLC+   V  A ++   M  E  +P+V TYN +++  C      EA+ 
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+DRG   D+ TFN ++  LC   +++EA  L   +   GV PD +       +  
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVY------TFNI 396

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+ LCK+G    A  L + +  +G  P+ VTYN  I  LC+  ++ KA DL  DME  G
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              + + + T++    +K    +  E+   MD + +   A   + ++D L K++
Sbjct: 457 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 510



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T+TYNTIIDGLCK+  +++A+E+F QM  + I+ N +T+N+LI G C     ++A 
Sbjct: 457 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAF 516

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  GLQ + +T+N I+   CK   + +A  +L+ M   G       E+++V YG
Sbjct: 517 ELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF------EVDVVTYG 570

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK G+ + A ++ + +   G+ P    YN  + +L     +  A  LF +M   
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 192 GVAPNCVIFTTLMPSFIRKNETSK-VIELLRSMDKRNVMPYASILSIIVDLLV 243
           G  P+ + +  +     R     K   + +  M  +  +P  S   ++ + L+
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 683



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C    VT N +I+G CK G V+ A     Q   +   P+ +TYN+ ++G C  +    A 
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G   DV T+N++++ LCKN +++EA  +L+ M+  G  PD      I  + 
Sbjct: 307 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD------ITTFN 360

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC   +L+ A +L++ +T  G+ P+V T+NI I+ALC       A  LF +M+  
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 420

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASIL 235
           G  P+ V + TL+ +     +  K ++LL+ M+     R+ + Y +I+
Sbjct: 421 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTII 468



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P+  T+ T++ G  +EG ++ A  +  +M +   +   VT N LI+G+C      +A  Y
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  E+ D G + D +T+N  ++ LC+N  +  A +++D+M+Q G  PD F       Y  
Sbjct: 274 IQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF------TYNI 326

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ LCK G+L+ A+ +   +   G +P++ T+N  I ALC   ++++A DL   + VKG
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 386

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V+P+   F  L+ +  +  +    + L   M      P     + ++D
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT+NT++  LC+   V  A  +  +M    + P+  T+ +L+ GF        A  
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M++ G  +  VT NV+++  CK  ++++A   +   I  G  PD       + Y  
Sbjct: 238 VKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ------ITYNT 291

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            ++GLC+   + +A ++   + + G  P+V TYNI ++ LC + Q+++A  +   M  +G
Sbjct: 292 FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG 351

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+   F TL+ +    N   + ++L R +  + V P     +I+++ L K
Sbjct: 352 CLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 4/179 (2%)

Query: 45  ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
           ++  P    Y  +I         +  + L  EM   G Q  +   +  +D     +  D+
Sbjct: 68  DDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDD 127

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           A  L    I   ++P    + + V Y  L++ L +  K+K    +   +   G+ P+VVT
Sbjct: 128 AVDL----ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVT 183

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +N  + ALC   Q+  A  +  +M  +GVAP+   FTTLM  F+ +      + +   M
Sbjct: 184 FNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 242



 Score = 40.8 bits (94), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NEAE 71
           +P    YN ++  L +   +  A  LF +M +    P+ +TY  +  G C       EA 
Sbjct: 598 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAF 657

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
              +EM+D+G   +  +F ++ + L  N  MD+
Sbjct: 658 DFMLEMVDKGFIPEFSSFRMLAEGLL-NLGMDD 689


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 116/211 (54%), Gaps = 6/211 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T T N II+G+CK   VD+A +LF  +    +  +VVTYN LI  F    +   AE ++
Sbjct: 300 DTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIY 359

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           +EM+ +G+    VT+N ++D  CK  +++EA +++D M+  G  PD      +V +  LI
Sbjct: 360 LEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPD------VVTFSTLI 413

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G CK G++ +  EL   + + GL+ + +TYN  IH  C    ++ A D+F +M   GV 
Sbjct: 414 KGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVC 473

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           P+ + F +++     K E  K + +L  + K
Sbjct: 474 PDTITFRSMLAGLCTKAELQKGLTMLEDLQK 504



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 127/238 (53%), Gaps = 19/238 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI-----------HGFC 62
           P T+TY+++IDG CK   ++ AK +F  M  +  +P+++T N+LI           HGFC
Sbjct: 183 PTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFC 242

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-A 121
              + N A+ LF EM+  G+  D+VT N ++  LC+N K+++A  +  +  +  +  D A
Sbjct: 243 QVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTA 302

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
            C I       +I+G+CK  K+  A +L  SL   G+  +VVTYNI I     +    +A
Sbjct: 303 TCNI-------IINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRA 355

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            D++L+M  KG+ P+ V + +++  F ++N   +  +++ SM      P     S ++
Sbjct: 356 EDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLI 413



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 23/258 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V Y+ I+D LCK+G   KA+ +F +M ++ I PNV+TYN +I G+C     ++AE 
Sbjct: 77  KANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQ 136

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++R +  DVVTF+ +++   K  K+  A  L   M++  + P        + Y  
Sbjct: 137 LLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFP------TTITYSS 190

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI-----------TIHALCNDEQMDKA 181
           +IDG CK  +L++A+ +   +   G  P+++T N             IH  C    ++ A
Sbjct: 191 MIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVA 250

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
            DLF +M   GV+P+ V   TL+       +  K +E+ +   K  +    +  +II++ 
Sbjct: 251 QDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIING 310

Query: 242 LVK-NEIS-----LNSIP 253
           + K N++       NS+P
Sbjct: 311 MCKGNKVDEAWDLFNSLP 328



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 126/237 (53%), Gaps = 7/237 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN +IDG C  G    A++L   M + NI+P+VVT+++LI+ F      + AE L
Sbjct: 113 PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEEL 172

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
           + EM+ R +    +T++ ++D  CK+ ++++A  + DLM+  G  PD    +N +  GC 
Sbjct: 173 YREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDII-TLNTLIDGCC 231

Query: 133 -----LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
                LI G C++G +  A++L Q +   G+ P++VT N  +  LC + +++KA ++F  
Sbjct: 232 RAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKV 291

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +   +  +      ++    + N+  +  +L  S+    V       +I++ + VK
Sbjct: 292 FQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVK 348



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 122/229 (53%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N VT+ T+++GLC+EG V +A  L  +M +E   P+ VTY ++++G C   D   A 
Sbjct: 6   CPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSAL 65

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M +  ++++VV ++ I+D LCK+    +A  +   M + G+ P      N++ Y 
Sbjct: 66  NMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFP------NVLTYN 119

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           C+IDG C  GK  +A +L + +    + P+VVT++  I+A   + ++  A +L+ +M  +
Sbjct: 120 CMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRR 179

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            + P  + +++++  F + +       +   M  +   P    L+ ++D
Sbjct: 180 NIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLID 228



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 94/168 (55%), Gaps = 6/168 (3%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M++ G  ++VVTF  +M+ LC+  ++ +A  L+D M++ G +PDA      V YG +++G
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDA------VTYGTIVNG 54

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           +CK+G   +A  + + +  + +  NVV Y+  +  LC D    KA ++F +M  KG+ PN
Sbjct: 55  MCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPN 114

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + +  ++  +    + S   +LLR M +RN+ P     S +++  VK
Sbjct: 115 VLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVK 162



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 88/150 (58%), Gaps = 9/150 (6%)

Query: 10  VVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           ++CK   P+TVTYN+++DG CK+  +++A+++   M  E  +P+VVT+++LI G+C A  
Sbjct: 362 MLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGR 421

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++   LF EM  RGL +D +T+N ++   CK   ++ A  + + M+  GV PD      
Sbjct: 422 VDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDT----- 476

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            + +  ++ GLC   +L+    + + L ++
Sbjct: 477 -ITFRSMLAGLCTKAELQKGLTMLEDLQKS 505



 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%)

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G   NVVT+   ++ LC + ++ +A  L   M  +G  P+ V + T++    +  +
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           T   + +LR MD+  +     I S IVD L K+
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKD 93


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 29/262 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I G+CK G ++ A+ L  +M+ + I+ N V +N+LI G+C +   +EA  L
Sbjct: 363 PSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRL 422

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
            + M  +GL+SDV  +N I   LCK  + DEA  LL  M++ GV P         D +C+
Sbjct: 423 QVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCK 482

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                NI+ Y  LIDG  K G +K A +L   L   GL+P+V T
Sbjct: 483 EGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYT 542

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
               IH  C D ++D A  LF +M  +G+ PN V +T ++    +   + +  +L   M 
Sbjct: 543 CTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMK 602

Query: 225 KRNVMPYASILSIIVDLLVKNE 246
           +  + P  ++ S +V  L   E
Sbjct: 603 ETGLTPDDTVYSSLVGSLHSAE 624



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  + +   Y +II   C+ G V +A  LF +M D+ + P+  TY +LIHG C A 
Sbjct: 322 REKGI--EADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAG 379

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A+ L  EM  +G+  + V FN ++D  C++  +DEA RL  +M + G+  D F   
Sbjct: 380 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVF--- 436

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
              AY  +  GLCK+ +   A+ L  S+   G+ PN +++   I   C +    +A  +F
Sbjct: 437 ---AYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVF 493

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +ME KG  PN + +  L+  + ++    +  +L   ++ R ++P
Sbjct: 494 REMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIP 538



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N VTYN  I+G  K   +    E+   M+ E +  NVVTY  LIHGF       EA+ 
Sbjct: 257 KANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQR 316

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM ++G+++DV  +  I+   C++  +  A  L D M   G+ P A        YG 
Sbjct: 317 LFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAH------TYGA 370

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G+CK G+++ A+ L   +   G+  N V +N  I   C    +D+A  L + ME KG
Sbjct: 371 LIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKG 430

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  +   + ++     + N   +   LL SM +R V P     + ++D+  K
Sbjct: 431 LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCK 482



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 12/230 (5%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND-GNEAEYLFIEMMDR 80
           ++DGLCK G V+  ++L  ++  + +  NVVTYN+ I G+    D G  AE L + M   
Sbjct: 231 VLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTL-MEKE 289

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G+  +VVT+ +++       K++EA RL + M + G+  D +       Y  +I   C+ 
Sbjct: 290 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVY------VYTSIISCNCRS 343

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G +K A  L   +T  GL+P+  TY   IH +C   QM+ A  L  +M+ KG+  N VIF
Sbjct: 344 GNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIF 403

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVKNE 246
            TL+  +       + + L   M+K+    +V  Y SI S +  L  K+E
Sbjct: 404 NTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDE 453



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 10/173 (5%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA   F  M  +G   D  +  V +  L +  ++D   R    M+   V      E+ +
Sbjct: 172 GEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDV------EVTV 225

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            +   ++DGLCK G ++  R+L   +   G+  NVVTYN  I        +    ++   
Sbjct: 226 YSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTL 285

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
           ME +GVA N V +T L+  F    +  +   L   M ++    +V  Y SI+S
Sbjct: 286 MEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIIS 338


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYN +++G C +G +D+A  +  +M+  N+ P+VVTYN+LI G     D +E   L
Sbjct: 316 PTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSL 375

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G++ + VT+N+I+  +CK   M EAT  LD M + G+ PD       V Y  L
Sbjct: 376 IEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDC------VTYNTL 429

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I   CK GK+  A  +   +T  GL  +  T N  +H LC ++++D+A++L      +G 
Sbjct: 430 IGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGY 489

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             + V +  L+  + +  +  + + L   M +R +MP
Sbjct: 490 ILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMP 526



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
             N   EFG  C P+TV+YNTI+D L K   + +A++L L MK + ++PN  TYN L+ G
Sbjct: 235 WVNKMSEFG--CVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCG 292

Query: 61  FCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           +C      EA  + IE+M R  L   V T+N++++  C + K+DEA R+ D M +  V P
Sbjct: 293 YCRLGLLKEATKV-IEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLP 351

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           D      +V Y  LIDG  +         L + + + G+  N VTYNI +  +C    M 
Sbjct: 352 D------VVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMT 405

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           +A      ME  G++P+CV + TL+ ++ +  +  K   ++  M  + +
Sbjct: 406 EATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGL 454



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 9/235 (3%)

Query: 13  KPNTVTYNTIIDGLCK---EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           +PN +T NT+++ L +      +  A+++        + PN  ++N LI+G+C  +   +
Sbjct: 172 RPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKD 231

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A     +M + G   D V++N I+D L K R + EA  LL  M   G+ P      N   
Sbjct: 232 ALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSP------NKHT 285

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+ G C++G LK A ++ + +TR  L+P V TYN+ ++  CND ++D+A  +  +ME
Sbjct: 286 YNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEME 345

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              V P+ V + TL+    +  ++S+V  L+  MDK+ V   A   +II+  + K
Sbjct: 346 KMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCK 400



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 8/215 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GV C  N VTYN I+  +CK+G + +A     +M++  ++P+ VTYN+LI  +C A    
Sbjct: 383 GVKC--NAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMG 440

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +  EM  +GL+ D  T N I+  LC  +K+DEA  LL    + G   D       V
Sbjct: 441 KAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDE------V 494

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +YG LI G  K  K   A  L   +    +MP+ +TYN  I  LC   ++D+A D   +M
Sbjct: 495 SYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEM 554

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
              G+ P+   +  ++  F  +    K  +    M
Sbjct: 555 LENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEM 589



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 100/180 (55%), Gaps = 6/180 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T+TYN++I GLC+   VD+A +   +M +  + P+  TYN +IHGFC   +  +A   
Sbjct: 526 PSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQF 585

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM++   + DV T N+++  LC+   +++A +L + ++  G       +I++V Y  +
Sbjct: 586 HNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGK------DIDVVTYNTI 639

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LCK GK +NA +L   +    L P+  TY + I AL +  ++ +A +  L M   G+
Sbjct: 640 ISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGI 699



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 8/192 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V+Y  +I G  K+   D+A  L+ +MK+  I P+ +TYNS+I G C +   ++A     E
Sbjct: 494 VSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNE 553

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLID 135
           M++ GL  D  T+N+I+   C    +++A +  + MI+   +PD + C I       L+ 
Sbjct: 554 MLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNI-------LLR 606

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLC+ G L+ A +L  +L   G   +VVTYN  I +LC + + + A+DL  +ME K + P
Sbjct: 607 GLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGP 666

Query: 196 NCVIFTTLMPSF 207
           +   +  ++ + 
Sbjct: 667 DQYTYKVIIAAL 678



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 10/232 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +T T NTI+  LC E  +D+A  L           + V+Y  LI G+     G+ A  
Sbjct: 455 KIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALN 514

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM +R +    +T+N ++  LC++RK+D+A   L+ M++ G+ PD         Y  
Sbjct: 515 LWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDE------TTYNI 568

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C  G ++ A +    +      P+V T NI +  LC +  ++KA  LF  +  KG
Sbjct: 569 IIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKG 628

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVD 240
              + V + T++ S  ++ +     +LL  M+ + + P    Y  I++ + D
Sbjct: 629 KDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTD 680



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 109/234 (46%), Gaps = 32/234 (13%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  P+  TYN II G C EG V+KA +   +M +    P+V T N L+ G C    
Sbjct: 556 ENGLV--PDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGM 613

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A  LF  ++ +G   DVVT+N I+  LCK  K + A  LL  M    + PD +    
Sbjct: 614 LEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQY---- 669

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM----------PNVVT------------ 164
              Y  +I  L   G++K A E +  +  +G++           NV+T            
Sbjct: 670 --TYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSI 727

Query: 165 -YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI-RKNETSKV 216
            Y+  I+ LCN  +   A  LF+++  +GVA N   +  LM   I R+  TSK 
Sbjct: 728 AYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYLNLMEGLIKRRKSTSKA 781


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  133 bits (334), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+ID LC  G + KA +L   M+      + +TYN++I G C      EAE
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M  +G+  + +TFN ++D LCK++K+D+A  L++ MI  G++P      N + Y 
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQP------NNITYN 535

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++   CK G +K A ++ +++T  G   +VVTY   I+ LC   +   A  +   M +K
Sbjct: 536 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 595

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+ P    +  ++ S  R+N     + L R M +    P A    I+
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIV 642



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYNT ++GLC+   V  A ++   M  E  +P+V TYN +++  C      EA+ 
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+DRG   D+ TFN ++  LC   +++EA  L   +   GV PD +       +  
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVY------TFNI 396

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+ LCK+G    A  L + +  +G  P+ VTYN  I  LC+  ++ KA DL  DME  G
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              + + + T++    +K    +  E+   MD + +   A   + ++D L K++
Sbjct: 457 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 510



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T+TYNTIIDGLCK+  +++A+E+F QM  + I+ N +T+N+LI G C     ++A 
Sbjct: 457 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAF 516

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  GLQ + +T+N I+   CK   + +A  +L+ M   G       E+++V YG
Sbjct: 517 ELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF------EVDVVTYG 570

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK G+ + A ++ + +   G+ P    YN  + +L     +  A  LF +M   
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 192 GVAPNCVIFTTLMPSFIRKNETSK-VIELLRSMDKRNVMPYASILSIIVDLLV 243
           G  P+ + +  +     R     K   + +  M  +  +P  S   ++ + L+
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 683



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C    VT N +I+G CK G V+ A     Q   +   P+ +TYN+ ++G C  +    A 
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G   DV T+N++++ LCKN +++EA  +L+ M+  G  PD      I  + 
Sbjct: 307 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD------ITTFN 360

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC   +L+ A +L++ +T  G+ P+V T+NI I+ALC       A  LF +M+  
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 420

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASIL 235
           G  P+ V + TL+ +     +  K ++LL+ M+     R+ + Y +I+
Sbjct: 421 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTII 468



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P+  T+ T++ G  +EG ++ A  +  +M +   +   VT N LI+G+C      +A  Y
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  E+ D G + D +T+N  ++ LC+N  +  A +++D+M+Q G  PD F       Y  
Sbjct: 274 IQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF------TYNI 326

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ LCK G+L+ A+ +   +   G +P++ T+N  I ALC   ++++A DL   + VKG
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 386

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V+P+   F  L+ +  +  +    + L   M      P     + ++D
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT+NT++  LC+   V  A  +  +M    + P+  T+ +L+ GF        A  
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M++ G  +  VT NV+++  CK  ++++A   +   I  G  PD       + Y  
Sbjct: 238 VKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ------ITYNT 291

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            ++GLC+   + +A ++   + + G  P+V TYNI ++ LC + Q+++A  +   M  +G
Sbjct: 292 FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG 351

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+   F TL+ +    N   + ++L R +  + V P     +I+++ L K
Sbjct: 352 CLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 4/179 (2%)

Query: 45  ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
           ++  P    Y  +I         +  + L  EM   G Q  +   +  +D     +  D+
Sbjct: 68  DDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDD 127

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           A  L    I   ++P    + + V Y  L++ L +  K+K    +   +   G+ P+VVT
Sbjct: 128 AVDL----ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVT 183

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +N  + ALC   Q+  A  +  +M  +GVAP+   FTTLM  F+ +      + +   M
Sbjct: 184 FNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 242



 Score = 40.8 bits (94), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NEAE 71
           +P    YN ++  L +   +  A  LF +M +    P+ +TY  +  G C       EA 
Sbjct: 598 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAF 657

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
              +EM+D+G   +  +F ++ + L  N  MD+
Sbjct: 658 DFMLEMVDKGFIPEFSSFRMLAEGLL-NLGMDD 689


>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 566

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  ++  LC++G V  A +L  +M++     N VTYNSL+ G C   +  ++  L
Sbjct: 130 PDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQL 189

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++ +GL  +  T++ +++   K R  DEA++LLD +I  G  P      N+V+Y  L
Sbjct: 190 LDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEP------NLVSYNVL 243

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK G+ ++A  L + L   G  PNVV+YNI + +LCN+ + ++A+ L  +M     
Sbjct: 244 LTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDER 303

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +P+ V +  L+ S      T   +E+L  M +    P AS  + I+  L K+
Sbjct: 304 SPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKD 355



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V+YN ++ GLCKEG  + A  LF ++  +  +PNVV+YN L+   C      EA  
Sbjct: 234 EPNLVSYNVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANV 293

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM         VT+N+++  L  + + + A  +L+ MI+   +P A       +Y  
Sbjct: 294 LLAEMNGDERSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTA------SSYNP 347

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK GKL    +    +      PN  TYN  I  LC +  + +A  +   +  K 
Sbjct: 348 IIAHLCKDGKLDLVVKCLDQMMYRHCNPNEGTYN-AIATLCEEGMVQEAFSIIQSLGNKQ 406

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            +     +  ++ S  RK  T    +LL  M K    P    Y+S++
Sbjct: 407 HSSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLI 453



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 14/241 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   +YN II  LCK+G +D   +   QM   + NPN  TYN+ I   C      EA  
Sbjct: 339 KPTASSYNPIIAHLCKDGKLDLVVKCLDQMMYRHCNPNEGTYNA-IATLCEEGMVQEAFS 397

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   + ++   S    + +++  LC+      A +LL  M + G  PD+F       Y  
Sbjct: 398 IIQSLGNKQHSSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSF------TYSS 451

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  G L  A E+  S+      P+   YN  I   C   + D A D+F  M  KG
Sbjct: 452 LIRGLCMEGMLNEAIEIF-SVMEENNKPDTENYNSLILGCCKSRRTDLALDVFEIMVGKG 510

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             PN   +T L+   I + E     ++LR +  R+V+  +++  +++      +  LN +
Sbjct: 511 YLPNETTYTILVEGIIHEKEMDLATKVLRELQLRDVISQSTLERLVM------QYDLNEL 564

Query: 253 P 253
           P
Sbjct: 565 P 565



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 10/164 (6%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+++G + DV     ++ +LCK  KM +A +++++MI  G+ PDA       +Y  L+  
Sbjct: 88  MVEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMMIGSGIIPDA------SSYTFLVSS 141

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LC+ G +  A +L   +   G   N VTYN  +  LC    + ++  L   +  KG+ PN
Sbjct: 142 LCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPN 201

Query: 197 CVIFTTLMPSFIRK---NETSKVI-ELLRSMDKRNVMPYASILS 236
              ++ L+ +  ++   +E SK++ E++    + N++ Y  +L+
Sbjct: 202 AYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLT 245



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +++  K  ++ +A   L+ M++ G +PD F          L+  LCK  K++ A ++ + 
Sbjct: 69  VEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQ------LLYDLCKACKMRKAIKVMEM 122

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +  +G++P+  +Y   + +LC    +  A  L   ME  G   N V + +L+        
Sbjct: 123 MIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGN 182

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++ ++LL  + ++ ++P A   S +++   K
Sbjct: 183 LTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYK 214


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 10/238 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + ++YN +  GLCK   +D+A  +F +M++  + P+++TYN L++G+C A    +A 
Sbjct: 137 CSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAM 196

Query: 72  YLFIEMMDRGLQSDVV----TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            L  EM++    SDVV    ++N ++   CK R++  A  +L  MI+ G  P      N+
Sbjct: 197 TLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSP------NV 250

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V +  L+DGLC  GKL  A  + + +      P  VTY + I       ++DKA+D F+D
Sbjct: 251 VTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVD 310

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           M  +GV PN   +T L+      N+    +E+L+ M      P     + ++  L K 
Sbjct: 311 MLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKG 368



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 13/251 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQM----KDENINPNVVTYNSLIHGFCYANDGNE 69
           P+ +TYN ++ G C+ G +++A  L  +M    K  ++ P++ +YN++I GFC A     
Sbjct: 174 PSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPT 233

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A Y+   M+  G   +VVTFN ++D LC   K+DEA  + + M++        CE   V 
Sbjct: 234 ARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERN------CEPTAVT 287

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI G  +  ++  A +    + R G+ PNV TY   I  LC+  +++ A ++   M 
Sbjct: 288 YTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMS 347

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLR-SMDKRNV--MPYASILSIIVDLLVKNE 246
             G  PN V +T ++ +  +  +  +  +L   +M  R     P +   S IV  L +  
Sbjct: 348 STGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQS 407

Query: 247 ISLNSIPQFNR 257
             L +   F R
Sbjct: 408 KFLEAYEYFLR 418



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 9/208 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+NT++DGLC  G +D+A  +F  M + N  P  VTY  LI G   A   ++A 
Sbjct: 246 CSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKAN 305

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F++M+ RG++ +V T+  ++  LC   K+++A  +L  M   G  P      N+V Y 
Sbjct: 306 DYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREP------NVVTYT 359

Query: 132 CLIDGLCKIGKLKNAREL---SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +I  LCK G+++ A +L   +     A   P+   Y+  ++ LC   +  +A++ FL M
Sbjct: 360 RVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRM 419

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKV 216
               +     I+  +        ET KV
Sbjct: 420 VESKLVAKPHIYKAMADGLELVQETEKV 447



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P  VTY  +I G  +   +DKA + F+ M    + PNV TY +LI G C AN   +A 
Sbjct: 281 CEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDAL 340

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAY 130
            +   M   G + +VVT+  ++  LCK  +++ AT+L  D M   G R  A C+ +  AY
Sbjct: 341 EILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAM---GSR-TAKCKPDSYAY 396

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++  LC+  K   A E    +  + L+     Y      L   ++ +K   + L+   
Sbjct: 397 STIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEKVERVCLEASA 456

Query: 191 KGV 193
            G+
Sbjct: 457 HGI 459



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 13/230 (5%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TYN  ++ L K G   KA+++F  M  +   PN+ TY  ++ G C     + A  L  +M
Sbjct: 39  TYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDM 98

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             + L       N+++  LCKN K+D A  L         R    C ++ ++Y  L  GL
Sbjct: 99  ESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYK-------RLSDECSLDRISYNMLTYGL 151

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG----- 192
           CK  ++  A  +   +    ++P+++TYN  ++  C   +M++A  L  +M ++G     
Sbjct: 152 CKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEM-IEGKKGSD 210

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           V P+   + T++  F +  +      +LR M K    P     + ++D L
Sbjct: 211 VVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGL 260



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           ++ +L   + +   R + F +  +  Y   ++ L K G    AR++   +     +PN+ 
Sbjct: 15  KSPKLASRVFKWAARQEDF-QHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIY 73

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY I +  LC+D + D A +L  DME K + P   I   L+    +  +     EL + +
Sbjct: 74  TYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRL 133



 Score = 43.9 bits (102), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%)

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            V TYN  ++AL       KA  +F DM  K   PN   +  ++       +T   +ELL
Sbjct: 36  TVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELL 95

Query: 221 RSMDKRNVMPYASILSIIVDLLVKN 245
           + M+ + + P   I++++V  L KN
Sbjct: 96  QDMESKMLTPTTFIVNMLVSCLCKN 120



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 36/72 (50%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP++  Y+TI+  LC++    +A E FL+M +  +      Y ++  G     +  + E
Sbjct: 389 CKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEKVE 448

Query: 72  YLFIEMMDRGLQ 83
            + +E    G++
Sbjct: 449 RVCLEASAHGIE 460


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 129/236 (54%), Gaps = 7/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C P+ V+Y T++  LCK+  V++ K L   M ++ N+ P+ VTYN+LI+        ++A
Sbjct: 333 CPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDA 392

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                E  ++G   D V ++ ++D  CKN+ +D+A  L+  M   G  PD      +V Y
Sbjct: 393 LVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPD------VVTY 446

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDG C++GK+  A+++ Q + + G  PN VTY + ++ LC++ +  +A ++    E 
Sbjct: 447 TAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEE 506

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               PN + ++ +M    R+ + S+  +L R M ++  +P    +++++  L +N+
Sbjct: 507 HWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQ 562



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V Y+ ++D  CK   +DKAK L + M  +  NP+VVTY ++I GFC     +EA+ + 
Sbjct: 407 DKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKML 466

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   G + + VT+ V+++ LC N K  EA  ++++  +    P+A      + Y  ++
Sbjct: 467 QQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNA------ITYSAVM 520

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GL + GKL  A +L++ +   G +PN V  N+ I +LC ++ +  A     +   KG A
Sbjct: 521 HGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCA 580

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            N V FT+++  F +  +    + +L  M   N  P A   + + D L K
Sbjct: 581 VNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGK 630



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 122/231 (52%), Gaps = 8/231 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTVTY  +++GLC  G   +A+E+    ++    PN +TY++++HG       +EA 
Sbjct: 474 CKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEAC 533

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+++G   + V  N+++  LC+N+ +  A + L+  +  G      C +N+V + 
Sbjct: 534 DLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKG------CAVNVVNFT 587

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G C+IG L  A  + + +  +   P+ +TY     AL    ++D+A +L + M  K
Sbjct: 588 SVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGK 647

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G+ P  V +  ++  F +      +++LL  M  R   P+ ++ + +++ L
Sbjct: 648 GIDPTPVTYRAVIHRFCQWGRVDDMMKLLEKMIARQ--PFKTVYNQVIEKL 696



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 7/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+    NT I  L K   ++KA     +MK   I P++V+YN LI G+C  +  ++A  
Sbjct: 264 EPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALE 323

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYG 131
           L  EM  +G   D V++  +M  LCK+RK++E  RL++ M+Q   + PD       V Y 
Sbjct: 324 LIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQ------VTYN 377

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  L K G   +A    +     G   + V Y+  + + C ++ +DKA  L +DM  K
Sbjct: 378 TLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSK 437

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+ V +T ++  F R  +  +  ++L+ M K    P     +++++ L  N  SL +
Sbjct: 438 GCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEA 497

Query: 252 IPQFN 256
               N
Sbjct: 498 REMIN 502



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFCEINIVAYGCLID 135
           M  RG++     F+ +M    +   +  A R+L LM + GV PD + C   I        
Sbjct: 223 MTRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYV------ 276

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
            L K  KL+ A    + +  AG+ P++V+YN  I   C+  ++D A +L  +M  KG  P
Sbjct: 277 -LVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPP 335

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSM-DKRNVMPYASILSIIVDLLVKN 245
           + V + T+M    +  +  +V  L+ +M    N++P     + ++  L K+
Sbjct: 336 DKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKH 386



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 74  FIEMMDRGLQ--SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR--PDAFCEINIVA 129
           F    DR  +   D + +  ++D L K R    A R+L LM + G+   P+AF  + +V+
Sbjct: 183 FFYWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYV-MVS 241

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y        + G L+NA  +   + +AG+ P++   N  I+ L    +++KA      M+
Sbjct: 242 YS-------RAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMK 294

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V G+ P+ V +  L+  +   +     +EL+  M  +   P
Sbjct: 295 VAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPP 335



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 34/145 (23%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY------------------- 54
           P+ +TY T+ D L K+  +D+A EL ++M  + I+P  VTY                   
Sbjct: 616 PDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKL 675

Query: 55  --------------NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
                         N +I   CY  +  EAE L  +++    + D  T +++++    + 
Sbjct: 676 LEKMIARQPFKTVYNQVIEKLCYFGNREEAEKLLGKVLRTASKLDAKTCHILIESYLIDG 735

Query: 101 KMDEATRLLDLMIQGGVRPD-AFCE 124
               A ++   M +  + PD   CE
Sbjct: 736 NALSAYKVACQMFRRNLIPDLKLCE 760


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+ID LC  G + KA +L   M+      + +TYN++I G C      EAE
Sbjct: 330 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 389

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M  +G+  + +TFN ++D LCK++K+D+A  L++ MI  G++P      N + Y 
Sbjct: 390 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQP------NNITYN 443

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++   CK G +K A ++ +++T  G   +VVTY   I+ LC   +   A  +   M +K
Sbjct: 444 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 503

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+ P    +  ++ S  R+N     + L R M +    P A    I+
Sbjct: 504 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIV 550



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYNT ++GLC+   V  A ++   M  E  +P+V TYN +++  C      EA+ 
Sbjct: 191 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 250

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+DRG   D+ TFN ++  LC   +++EA  L   +   GV PD +       +  
Sbjct: 251 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVY------TFNI 304

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+ LCK+G    A  L + +  +G  P+ VTYN  I  LC+  ++ KA DL  DME  G
Sbjct: 305 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 364

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              + + + T++    +K    +  E+   MD + +   A   + ++D L K++
Sbjct: 365 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 418



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T+TYNTIIDGLCK+  +++A+E+F QM  + I+ N +T+N+LI G C     ++A 
Sbjct: 365 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAF 424

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  GLQ + +T+N I+   CK   + +A  +L+ M   G       E+++V YG
Sbjct: 425 ELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF------EVDVVTYG 478

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK G+ + A ++ + +   G+ P    YN  + +L     +  A  LF +M   
Sbjct: 479 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 538

Query: 192 GVAPNCVIFTTLMPSFIRKNETSK-VIELLRSMDKRNVMPYASILSIIVDLLV 243
           G  P+ + +  +     R     K   + +  M  +  +P  S   ++ + L+
Sbjct: 539 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 591



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C    VT N +I+G CK G V+ A     Q   +   P+ +TYN+ ++G C  +    A 
Sbjct: 155 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 214

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G   DV T+N++++ LCKN +++EA  +L+ M+  G  PD      I  + 
Sbjct: 215 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD------ITTFN 268

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC   +L+ A +L++ +T  G+ P+V T+NI I+ALC       A  LF +M+  
Sbjct: 269 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 328

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASIL 235
           G  P+ V + TL+ +     +  K ++LL+ M+     R+ + Y +I+
Sbjct: 329 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTII 376



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P+  T+ T++ G  +EG ++ A  +  +M +   +   VT N LI+G+C      +A  Y
Sbjct: 122 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 181

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  E+ D G + D +T+N  ++ LC+N  +  A +++D+M+Q G  PD F       Y  
Sbjct: 182 IQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF------TYNI 234

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ LCK G+L+ A+ +   +   G +P++ T+N  I ALC   ++++A DL   + VKG
Sbjct: 235 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 294

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V+P+   F  L+ +  +  +    + L   M      P     + ++D
Sbjct: 295 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 342



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT+NT++  LC+   V  A  +  +M    + P+  T+ +L+ GF        A  
Sbjct: 86  KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 145

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M++ G  +  VT NV+++  CK  ++++A   +   I  G  PD       + Y  
Sbjct: 146 VKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ------ITYNT 199

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            ++GLC+   + +A ++   + + G  P+V TYNI ++ LC + Q+++A  +   M  +G
Sbjct: 200 FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG 259

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+   F TL+ +    N   + ++L R +  + V P     +I+++ L K
Sbjct: 260 CLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 311



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 4/151 (2%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G Q  +   +  +D     +  D+A  L    I   ++P    + + V Y  
Sbjct: 4   LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDL----ILNQLQPLFGIQADTVVYNH 59

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++ L +  K+K    +   +   G+ P+VVT+N  + ALC   Q+  A  +  +M  +G
Sbjct: 60  LLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRG 119

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           VAP+   FTTLM  F+ +      + +   M
Sbjct: 120 VAPDETTFTTLMQGFVEEGSIEAALRVKARM 150



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NEAE 71
           +P    YN ++  L +   +  A  LF +M +    P+ +TY  +  G C       EA 
Sbjct: 506 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAF 565

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
              +EM+D+G   +  +F ++ + L  N  MD+
Sbjct: 566 DFMLEMVDKGFIPEFSSFRMLAEGLL-NLGMDD 597


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 107/191 (56%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A +L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 305 IDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGH 418

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 419 VPSVVTYNVLM 429



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVTFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AH L  +M VKG+ P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 319 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALIS 360



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDK------ITYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L +A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 323 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVP 420



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P A   ++I++   K 
Sbjct: 348 IRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 280



 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 43.5 bits (101), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWG 172

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
          Length = 1765

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 6/241 (2%)

Query: 7    EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
             +G  C P+ V YN +IDG C+ G + +   L  +M+ +   P +VTY SLI+      D
Sbjct: 1173 RWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGD 1232

Query: 67   GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              +   LF+EM  RG   +V  +N ++D LCK R   +A  +L  M   G  PD      
Sbjct: 1233 LEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPD------ 1286

Query: 127  IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            I+ +  LI GLC  G ++ A    +   R  L PN ++Y   IH  C   ++  A DL +
Sbjct: 1287 IITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLV 1346

Query: 187  DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +M  +G  P+ V F  L+   +   + S+ + +   M +R V P  +I ++++  L K  
Sbjct: 1347 EMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKR 1406

Query: 247  I 247
            +
Sbjct: 1407 M 1407



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 123/267 (46%), Gaps = 45/267 (16%)

Query: 8    FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            F   C P+ +T+NT+I GLC EG V KA+    +     +NPN ++Y  LIHGFC   + 
Sbjct: 1279 FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGEL 1338

Query: 68   NEAEYLFIEMMDRGLQSDVVTF-----------------------------------NVI 92
              A  L +EMM RG   DVVTF                                   NV+
Sbjct: 1339 MVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVL 1398

Query: 93   MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
            +  LCK R +  A  +L+ M++  V+PD F       Y  LIDG  +   L +AR++ + 
Sbjct: 1399 ISGLCKKRMLPAAKNILEEMLEKNVQPDEF------VYATLIDGFIRSENLGDARKIFEF 1452

Query: 153  LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
            +   G+ P++V+ N  I   C    M +A     +M   G  P+   +TT++  + ++  
Sbjct: 1453 MEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGN 1512

Query: 213  TSKVIELLRSMDKR----NVMPYASIL 235
             +  +  L  M KR    NV+ Y+S++
Sbjct: 1513 LNGALRWLCDMIKRKCKPNVVTYSSLI 1539



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P  VTY ++I+ L K+G ++K   LFL+M+    +PNV  YNS+I   C      +A  +
Sbjct: 1215 PTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVI 1274

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +M   G   D++TFN ++  LC    + +A   L   I+  + P      N ++Y  L
Sbjct: 1275 LKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNP------NQLSYTPL 1328

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            I G C  G+L  A +L   +   G  P+VVT+   IH L    ++ +A  +   M  + V
Sbjct: 1329 IHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 1388

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             P+  I+  L+    +K        +L  M ++NV P   + + ++D  +++E
Sbjct: 1389 FPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSE 1441



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 6/199 (3%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+   YN +I GLCK+  +  AK +  +M ++N+ P+   Y +LI GF  + +  +A  +
Sbjct: 1390 PDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 1449

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            F  M  +G+  D+V+ N ++   C+   M EA   +  M + G  PD F       Y  +
Sbjct: 1450 FEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEF------TYTTV 1503

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            I G  K G L  A      + +    PNVVTY+  I+  C     D A  LF +M+ + +
Sbjct: 1504 ISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEAL 1563

Query: 194  APNCVIFTTLMPSFIRKNE 212
            +PN V +T L+ S  +K++
Sbjct: 1564 SPNVVTYTILIGSLFKKDK 1582



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 6/192 (3%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            +P+   Y T+IDG  +   +  A+++F  M+ + I P++V+ N++I G+C     +EA  
Sbjct: 1424 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAIL 1483

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
                M   G   D  T+  ++    K   ++ A R L  MI+   +P      N+V Y  
Sbjct: 1484 CMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKP------NVVTYSS 1537

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            LI+G CK G    A  L  ++    L PNVVTY I I +L   +++ +A   F  M +  
Sbjct: 1538 LINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNH 1597

Query: 193  VAPNCVIFTTLM 204
             +PN V    L+
Sbjct: 1598 CSPNDVTLHYLV 1609



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 30/236 (12%)

Query: 10   VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
            V C P+  TY T+I G  K+G ++ A      M      PNVVTY+SLI+G+C   D + 
Sbjct: 1491 VGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDF 1550

Query: 70   AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            AE LF  M    L  +VVT+ +++  L K  K+  A    + M+         C  N V 
Sbjct: 1551 AEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLN------HCSPNDVT 1604

Query: 130  YGCLIDGL------------CKIGKLKNARELSQSLTRAGL---MPNVVTYNITIHALCN 174
               L++GL            C   ++     L     +       P    YN  I +LC 
Sbjct: 1605 LHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCR 1664

Query: 175  DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
               + +A D    M  KG  PN + F +L+  F           + +S++ R ++P
Sbjct: 1665 HNMLREALDFKNRMAKKGYVPNPITFLSLLYGF---------CSVGKSVNWRTILP 1711



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 6/164 (3%)

Query: 81   GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
            G   +V   N ++  L + R+ D+A +L D M+      D +          L+ GLC  
Sbjct: 1107 GSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTC------VLVRGLCLE 1160

Query: 141  GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
             +++   +L ++   AG +P+VV YN+ I   C    M +   L  +ME KG  P  V +
Sbjct: 1161 RRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTY 1220

Query: 201  TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +L+    +K +  K+  L   M KR   P   I + ++D L K
Sbjct: 1221 GSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCK 1264


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 8/221 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTY+ +ID  CK G V +   L  +M+ E +  +V  Y+SLI  FC   D     
Sbjct: 181 CRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGR 240

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM+ R +  +VVT++ +M  L +  +  EA+ +L  M   GVRPD      +VAY 
Sbjct: 241 ELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPD------VVAYT 294

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L DGLCK G+  +A ++   + + G  P  +TYN+ ++ LC +++MD A  +   M  K
Sbjct: 295 VLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKK 354

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM--DKRNVMP 230
           G  P+ V + TL+       +  + ++L + +  +K +V P
Sbjct: 355 GKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKP 395



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 15/245 (6%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD--ENINPNVVTYNSLIHGFCY 63
           R FGV    N    N ++ G C+ G  DKA  LF QMK   + + P+ VTYN+L++GFC 
Sbjct: 106 RGFGV----NVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCK 161

Query: 64  ANDGNEAEYLFIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           A    EA  LF E M +G   + ++VT++V++D  CK+ ++ E   LL+ M + G++ D 
Sbjct: 162 AKRLAEARVLF-EAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADV 220

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           F       Y  LI   C  G ++  REL   + R  + PNVVTY+  +  L    +  +A
Sbjct: 221 F------VYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREA 274

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
            ++  DM  +GV P+ V +T L     +       I++L  M ++   P     +++V+ 
Sbjct: 275 SEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNG 334

Query: 242 LVKNE 246
           L K +
Sbjct: 335 LCKED 339



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 125/234 (53%), Gaps = 8/234 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNEA 70
           KP+ VTYNT++ GLC  G + +A +L+  +  E  ++ P+V T N+LI G C     ++A
Sbjct: 357 KPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDA 416

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +   M++ GLQ ++VT+N +++     RK+ EA +L    ++ G  P      N + Y
Sbjct: 417 ARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSP------NSMTY 470

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I+GLCK+  L  AR L   +  +G+ P V+ YN  + +LC ++ +++A  LF +M  
Sbjct: 471 SVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRN 530

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
                + V F  ++   ++  +     ELL  M   +++P A   SI+++   K
Sbjct: 531 VNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSK 584



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 136/278 (48%), Gaps = 32/278 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T N +I GLCKEG V  A  +   M +  +  N+VTYN LI G+  A    EA  
Sbjct: 394 KPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALK 453

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
           L+   ++ G   + +T++V+++ LCK + +  A  L   M   G+RP          + C
Sbjct: 454 LWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLC 513

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                +++V++  +IDG  K G +K+A+EL   +    L+P+ V
Sbjct: 514 REDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAV 573

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T++I I+       +D+A  L+  M   G  P  V+F +L+  +  K ET K+I LL  M
Sbjct: 574 TFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQM 633

Query: 224 DKRNVMPYASILSIIVDLLVKNEISLNS---IPQFNRQ 258
             ++V+  + + S I+  L     +L+    +P+F++Q
Sbjct: 634 ADKDVVLDSKLTSTILACLCHMSRNLDVEKILPKFSQQ 671



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 7/206 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR--GLQSDVVTFNVIMDELCKN 99
           M       NV   N ++ GFC +   ++A  LF +M      +  D VT+N +++  CK 
Sbjct: 103 MTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKA 162

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           +++ EA  L + M +GG      C  N+V Y  LID  CK G++     L + + R GL 
Sbjct: 163 KRLAEARVLFEAMKKGGD-----CRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLK 217

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            +V  Y+  I A C +  ++   +LF +M  + V+PN V ++ LM    R     +  E+
Sbjct: 218 ADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEM 277

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKN 245
           L+ M  R V P     +++ D L KN
Sbjct: 278 LKDMTARGVRPDVVAYTVLADGLCKN 303


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 7/245 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT +T+IDGLCK G +  A  +F  M+   + PN V Y++LIHG C A   + A 
Sbjct: 301 CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 360

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M       D +T+N+++D LCK+  ++ A    D M++ G +PD +       Y 
Sbjct: 361 EMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVY------TYN 414

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G CK G    A  +   ++ +   PNVVTY   I  LC   Q+ KA   F  M+ +
Sbjct: 415 ILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKER 474

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+  ++++L+    +  +      L   M++  V    +   +I  L   N +   +
Sbjct: 475 GCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVD-EA 533

Query: 252 IPQFN 256
           +  FN
Sbjct: 534 VSLFN 538



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 125/298 (41%), Gaps = 64/298 (21%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYN +++GLCK G +++A +L  ++ D    P+VVTY SLI G        EA 
Sbjct: 196 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAY 255

Query: 72  YLFIEMMDRGL-----------------------------------QSDVVTFNVIMDEL 96
            LF EM  RGL                                     DVVT + ++D L
Sbjct: 256 KLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGL 315

Query: 97  CKNRKMDEATRLLDLMIQGGVRPD-----------------------------AFCEINI 127
           CK  ++  A R+   M   G+ P+                             AFC  + 
Sbjct: 316 CKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 375

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + Y  LIDGLCK G ++ AR     +  AG  P+V TYNI +   C     D A  +F D
Sbjct: 376 ITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDD 435

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           M     +PN V + TL+    ++ + +K     + M +R   P + + S +VD L K+
Sbjct: 436 MSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKS 493



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 8/198 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T+TYN +IDGLCK G V+ A+  F +M +    P+V TYN L+ GFC A + + A 
Sbjct: 371 CTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAAC 430

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M       +VVT+  ++  LCK R++ +A+     M + G  PD+F       Y 
Sbjct: 431 GVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSF------VYS 484

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DGLCK GKL+    L   + R+G+  N  T    I  LC   ++D+A  LF  +  +
Sbjct: 485 SLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKE 543

Query: 192 GVAPNCVIFTTLMPSFIR 209
           G+ P+   + +++ + I+
Sbjct: 544 GM-PHPYAYNSIISTLIK 560



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +  TY  I+D L K   +  A  L  ++      P + TYN+L++G C      EA 
Sbjct: 161 CTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAI 220

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +++D G   DVVT+  ++D L K ++  EA +L   M   G+  D  C      Y 
Sbjct: 221 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVC------YT 274

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GL + GK+  A  + +++T  G +P+VVT +  I  LC   ++  A  +F  ME +
Sbjct: 275 ALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEAR 334

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+APN V+++ L+    +  +    +E+L  M K    P     +I++D L K+
Sbjct: 335 GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 388



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P+  T+N +I G C     ++A  +  +M+ D  + P++ T+N ++HG C +     A  
Sbjct: 92  PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F      G   D+ T+  I+D L KN+K+ +A  L++ +   G  P       I  Y  
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTP------TIATYNA 205

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLCK+G+L+ A +L + +   G  P+VVTY   I  L  +++  +A+ LF +M ++G
Sbjct: 206 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRG 265

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V +T L+   ++  +  +   + ++M  +  +P    LS ++D L K
Sbjct: 266 LVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 317



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 9/228 (3%)

Query: 32  VDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89
            D A ELF  L         +V T N+L+  F       EA  L    +      DV T+
Sbjct: 38  ADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETW 97

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           NV++   C  R+ +EA  ++  M +  GV P      ++  +  ++ GLCK GK+  A +
Sbjct: 98  NVLITGYCLAREPEEAFAVIREMEEDYGVAP------SLKTHNLVLHGLCKSGKVLAAMD 151

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
             ++ T  G   ++ TY   +  L  ++++  A  L   +   G  P    +  L+    
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           +     + I+LLR +      P     + ++D L K + S  +   F 
Sbjct: 212 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFK 259


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 125/237 (52%), Gaps = 13/237 (5%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG---- 67
            C P+  TYN +I+ LCK G ++ A+ L   M+      ++VTYN+LIHG C   +G    
Sbjct: 1763 CAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRV 1822

Query: 68   NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
              A  LF EM+D+G     VT+ V++D L + +  ++A ++LDLM + G      C  ++
Sbjct: 1823 ERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENG------CAFDL 1876

Query: 128  VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            V Y  LI+   K G +  A +L   +   G +P+VVTYN  +   C   ++++A+ LF +
Sbjct: 1877 VTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAE 1936

Query: 188  MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR---NVMPYASILSIIVDL 241
            M+ +G+ PN   +T++  + ++          L  M K    + + Y +++S I  L
Sbjct: 1937 MKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYVALISTICKL 1993



 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 7/184 (3%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C  + VTYN +I+   K G +DKA +LF++M      P+VVTYNS++ GFC A    EA 
Sbjct: 1872 CAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEAN 1931

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             LF EM  RG+  +  T+  I D   K  +M +A   L  M + G+       ++ ++Y 
Sbjct: 1932 KLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGL-------VDAISYV 1984

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             LI  +CK+GK K   +L + +   G  PN+VT+N+   AL  +   D A  +  ++  +
Sbjct: 1985 ALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQQ 2044

Query: 192  GVAP 195
              +P
Sbjct: 2045 HSSP 2048



 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 10/234 (4%)

Query: 15   NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            N   YN I+  LCK G   +A +L   M   +  P++ TYN LI+  C      +A+ L 
Sbjct: 1731 NAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLV 1790

Query: 75   IEMMDRGLQSDVVTFNVIMDELCKNR----KMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              M  R   +D+VT+N ++  LC+      +++ A RL + M+  G  P +      V Y
Sbjct: 1791 EMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTS------VTY 1844

Query: 131  GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
              +ID L ++   + A+++   +   G   ++VTYN+ I+       MDKA DLF++M  
Sbjct: 1845 TVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPT 1904

Query: 191  KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +G  P+ V + +++  F +  +  +  +L   M  R + P     + I D  +K
Sbjct: 1905 RGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLK 1958



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 106/210 (50%), Gaps = 14/210 (6%)

Query: 19   YNTIIDGLCKEGFVDKAKELFL-QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            +N +++ L  +    +A ++ + + K  +   N  TY++++ G+C   +  +A  L   M
Sbjct: 1664 FNRLLEFLVNKRQYKRAHQMLIAESKPSSFQANAFTYSTIVRGYCEDGETRQALALLEHM 1723

Query: 78   MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
                + ++   +N+I+  LCK+ K  EA  LL  M      PD      I  Y  LI+ L
Sbjct: 1724 KKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPD------IYTYNILINAL 1777

Query: 138  CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE----QMDKAHDLFLDMEVKGV 193
            CK+G+L++A+ L + +       ++VTYN  IH LC       ++++A  LF +M  KG 
Sbjct: 1778 CKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGH 1837

Query: 194  APNCVIFTTLMPSFIR---KNETSKVIELL 220
             P  V +T ++ + +R     +  KV++L+
Sbjct: 1838 TPTSVTYTVVIDALLRVKMDEQAQKVLDLM 1867



 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 81   GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
            G       FN +++ L   R+   A +    M+    +P +F + N   Y  ++ G C+ 
Sbjct: 1656 GYTHTAFAFNRLLEFLVNKRQYKRAHQ----MLIAESKPSSF-QANAFTYSTIVRGYCED 1710

Query: 141  GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
            G+ + A  L + + +A +  N   YNI +  LC   +  +A DL   M     AP+   +
Sbjct: 1711 GETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTY 1770

Query: 201  TTLMPSFIRKNETSKVIELLRSMDKR 226
              L+ +  +         L+  M  R
Sbjct: 1771 NILINALCKVGRLEDAQGLVEMMQAR 1796


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY  ++DGLCK   V  A++L   M  +   PN + Y++LI GFC A   +EA+ 
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M++ G   +V T++ ++D L K++++D   ++L  M++    P      NIV Y  
Sbjct: 702 VFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAP------NIVIYTE 755

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGL K+ K   A +L   +   G  PNVVTY   I       ++DK  +LF +M  KG
Sbjct: 756 MIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            APN V +T L+          +   LL  M K+   P
Sbjct: 816 CAPNFVTYTVLINHCCATGHLDEAYALLEEM-KQTYWP 852



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 22/245 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENI---------------NPNVVTYN 55
           C PN +TY  +IDG CK G ++KA +++ +M+ D +I                PNVVTY 
Sbjct: 590 CFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYG 649

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           +L+ G C A+   +A  L   M   G + + + ++ ++D  CK  K+DEA  +   M++ 
Sbjct: 650 ALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEH 709

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G  P      N+  Y  LID L K  +L    ++   +      PN+V Y   I  L   
Sbjct: 710 GYNP------NVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKV 763

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            + D+A+ L L ME KG  PN V +T ++  F +  +  K +EL R M  +   P     
Sbjct: 764 AKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTY 823

Query: 236 SIIVD 240
           +++++
Sbjct: 824 TVLIN 828



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 12/246 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+  TY  +ID   K G + +A     +M  +   P VVTY +LIH +  A   +
Sbjct: 519 GVV--PDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVS 576

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--FCEI- 125
            A  LF  M+ +G   +V+T+  ++D  CK+  +++A ++   M      PD   + +I 
Sbjct: 577 VANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIK 636

Query: 126 -------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
                  N+V YG L+DGLCK  K+K+AR+L +++   G  PN + Y+  I   C   ++
Sbjct: 637 NNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKL 696

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           D+A ++F  M   G  PN   +++L+    +      V+++L  M + +  P   I + +
Sbjct: 697 DEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEM 756

Query: 239 VDLLVK 244
           +D L K
Sbjct: 757 IDGLSK 762



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 29/241 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  +IDGL K    D+A +L L M+++   PNVVTY ++I GF  A   ++  
Sbjct: 746 CAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCL 805

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ--GGVRPDAFCEI---- 125
            LF EM  +G   + VT+ V+++  C    +DEA  LL+ M Q        ++C++    
Sbjct: 806 ELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGY 865

Query: 126 ---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                 I+ Y  LID   K G+L+ A EL + +  A +      
Sbjct: 866 KREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKK 925

Query: 165 --YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
             Y   I++     ++  A +LF DM   GV P+   F  L+   IR     + ++L  S
Sbjct: 926 NLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDS 985

Query: 223 M 223
           +
Sbjct: 986 L 986



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 45/266 (16%)

Query: 26  LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD 85
           LC  G  +KA ++  +M      P+  TY+ +I   C A+    A +LF EM   G+  D
Sbjct: 464 LCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPD 523

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------------------- 122
           V T+ +++D   K   + +A   LD M++ G  P                          
Sbjct: 524 VYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFE 583

Query: 123 ------CEINIVAYGCLIDGLCKIGKLKNARELSQSL----------------TRAGLMP 160
                 C  N++ Y  LIDG CK G ++ A ++   +                      P
Sbjct: 584 LMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKP 643

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           NVVTY   +  LC   ++  A DL   M V G  PN +++  L+  F +  +  +  E+ 
Sbjct: 644 NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVF 703

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNE 246
             M +    P     S ++D L K++
Sbjct: 704 HKMVEHGYNPNVYTYSSLIDRLFKDK 729



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +I   C+ G  + A E   ++KD    P  +TYN+L+  F  A+  + A+ +  EM +
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSE 269

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            GL  D  T       LCK  K  EA   L L+ +    P      N + Y  +I GLC+
Sbjct: 270 LGLSMDEFTLGFFAQALCKVGKWREA---LSLIEKEDFVP------NTILYNKMISGLCE 320

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A +    +     +PNV TY I +    N +Q+ +   +   M  +G  P+  I
Sbjct: 321 ASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTI 380

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           F +L+ ++ + ++ S   +LL+ M+K    P   + +I++
Sbjct: 381 FNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 51/267 (19%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY------------------- 54
           PNT+ YN +I GLC+  F ++A +   +M+  +  PNV TY                   
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365

Query: 55  ----------------NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                           NSL+H +C ++D + A  L  +M     +   V +N+++  +C 
Sbjct: 366 LSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICS 425

Query: 99  NRKM------DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
             ++      + A +  + M+  G       ++N+V++      LC  GK + A ++   
Sbjct: 426 GGELPGPVTFELAEKAYNEMLSAGT---VLNKVNVVSFA---RCLCGFGKFEKAYKVIHE 479

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF----I 208
           +   G +P+  TY+  I  LCN  +++ A  LF +M+  GV P+   +T L+  F    I
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGI 539

Query: 209 RKNETSKVIELLRSMDKRNVMPYASIL 235
            K   + + E++R   +  V+ Y +++
Sbjct: 540 IKQAHNWLDEMVRDGCEPTVVTYTTLI 566



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 108/295 (36%), Gaps = 52/295 (17%)

Query: 6   REFGVVCKPNTVTYNTIID---------------------GLCKEGF-----------VD 33
           ++FG   KP  +TYN ++                      GL  + F           V 
Sbjct: 233 KDFGY--KPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVG 290

Query: 34  KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           K +E    ++ E+  PN + YN +I G C A+   EA      M       +V T+ +++
Sbjct: 291 KWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL 350

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
                 +++    R+L +MI  G  P      +   +  L+   CK      A +L + +
Sbjct: 351 CGCLNKKQLGRCKRILSMMIAEGCYP------SYTIFNSLVHAYCKSDDFSYAYKLLKKM 404

Query: 154 TRAGLMPNVVTYNITIHALCNDEQM---------DKAHDLFLDMEVKGVAPNCVIFTTLM 204
            +    P  V YNI I ++C+  ++         +KA++  L         N V F   +
Sbjct: 405 EKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCL 464

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
             F +  +  KVI     M     +P  S  S ++  L       N+   F   K
Sbjct: 465 CGFGKFEKAYKVI---HEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMK 516



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT--YNSLIHGFCYANDGNEAE 71
           P  + Y  +ID   K G ++ A EL  ++   +++       Y SLI+ F YA+    A 
Sbjct: 886 PIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAF 945

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            LF +M+  G+  D+ TF  ++  L + R+ +EA +L D + Q
Sbjct: 946 ELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQ 988


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 128/257 (49%), Gaps = 29/257 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYN II+GLCK+G   +AK + ++M +  ++P+  TYN+L+   C  ++ +EA+ 
Sbjct: 33  KPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKE 92

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           +F EM+ +G+  D+V+F+ +M    +NR +D+A      M + G+ PD            
Sbjct: 93  IFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC 152

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              C ++++AY  +++GLCK   L +A +L   +   G +P+  
Sbjct: 153 RNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFY 212

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T+   IH  C D  M KA  LF  M  + + P+ V + TL+  F +  E  K  EL   M
Sbjct: 213 TFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGM 272

Query: 224 DKRNVMPYASILSIIVD 240
             R + P      I+++
Sbjct: 273 ISRKIFPNHITYGILIN 289



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           ++FG+V  P+ V Y  ++ G C+ G + +A ++  +M ++    +V+ YN++++G C   
Sbjct: 133 KKFGLV--PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEK 190

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A+ LF EM++RG   D  TF  ++   C++  M +A  L   M Q  ++PD     
Sbjct: 191 MLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPD----- 245

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            IVAY  LIDG CK+G+++ A EL   +    + PN +TY I I+A C+   + +A  L+
Sbjct: 246 -IVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLW 304

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             M  KG+ P  V   T++  + R  ++SK  E L  M  + V P
Sbjct: 305 DVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAP 349



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 6/200 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + + YNTI++GLCKE  +  A +LF +M +    P+  T+ +LIHG C   +  +A 
Sbjct: 172 CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKAL 231

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M  R ++ D+V +N ++D  CK  +M++A+ L D MI   + P      N + YG
Sbjct: 232 SLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFP------NHITYG 285

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+  C +G +  A  L   +   G+ P +VT N  I   C      KA +    M  K
Sbjct: 286 ILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAK 345

Query: 192 GVAPNCVIFTTLMPSFIRKN 211
           GVAP+ + + TL+    R++
Sbjct: 346 GVAPDHISYNTLINDGKRRS 365



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 18/217 (8%)

Query: 51  VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
           +VTYN+LI  +C      EA  +   M D+GL+  + T+N I++ LCK  +   A  +L 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170
            M+  G+ PD         Y  L+   C+      A+E+   + R G++P++V+++  + 
Sbjct: 61  EMLNIGLSPDT------TTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMA 114

Query: 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR---- 226
               +  +D+A   F DM+  G+ P+ VI+T LM  + R     + +++   M ++    
Sbjct: 115 VFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVL 174

Query: 227 NVMPYASILSII--------VDLLVKNEISLNSIPQF 255
           +V+ Y +IL+ +         D L    +   ++P F
Sbjct: 175 DVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 211


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 119/229 (51%), Gaps = 8/229 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+TV YN +I  L K+G VD+A EL   M  + I P+  TYN +I          +A 
Sbjct: 148 CMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKA- 206

Query: 72  YLFIEMMDRGLQS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           Y F  MM R   S DVVT+N +++ L K R+ DEA  L D M      PD      +  +
Sbjct: 207 YSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPD------LTTF 260

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           G LID L K G++++A E S  L + G +PN   YN  I   C   Q+DK ++LF DM  
Sbjct: 261 GTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIE 320

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
               P+ + +T L+  F R+  TS  +ELL+ M +    P  +  ++++
Sbjct: 321 CSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLI 369



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 127/276 (46%), Gaps = 30/276 (10%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEA 70
           C P+ V YNT+I G CK G  D+A ++F ++K E +  PN V++++L+   C  +   +A
Sbjct: 7   CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDA 66

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-------- 122
             +F EM+  GLQ+DV   N ++   C+   + +A RLL  M       D F        
Sbjct: 67  LAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDA 126

Query: 123 ---------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
                                C  + V Y  LI  L K GK+  A EL + + R G+MP+
Sbjct: 127 LGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPD 186

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
             TYNI I  L +  + +KA+  F  M+ +  +P+ V + TL+    +   T +  +L  
Sbjct: 187 CRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFD 246

Query: 222 SMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            M     MP  +    ++D L K     +++ Q  R
Sbjct: 247 EMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSAR 282



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN +ID L   G  +KA   F  MK    +P+VVTYN+L++G       +EA  L
Sbjct: 185 PDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDL 244

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM       D+ TF  ++D L K  +M++A      +++ G  P+++       Y  L
Sbjct: 245 FDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSY------IYNAL 298

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G++    EL Q +      P+ +TY I +           A +L  +M  +G 
Sbjct: 299 ISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGH 358

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P    +  L+ S     +      L + M  +   P     S + +L   N+
Sbjct: 359 TPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPNLSTPNK 411



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+++TY  ++ G  + G    A EL  +M  E   P + TYN LI     A    +A 
Sbjct: 323 CFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAY 382

Query: 72  YLFIEMMDRGLQSDVVTFNVI 92
            LF EM+ +G   D+ T++ +
Sbjct: 383 TLFKEMIAKGFNPDMQTYSAL 403


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 128/258 (49%), Gaps = 29/258 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I G+CK G ++ A+ L  +M+ + I+ N V +N+LI G+C +   +EA  L
Sbjct: 367 PSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRL 426

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
            + M  +GL+SDV  +N I   LCK  + DEA  LL  M++ GV P         D +C+
Sbjct: 427 QVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCK 486

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                NI+ Y  LIDG  K G +K A +L   L   GL+P+V T
Sbjct: 487 EGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYT 546

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
               IH  C D ++D A  LF +M  +G+ PN V +T ++    +   + +  +L   M 
Sbjct: 547 CTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMK 606

Query: 225 KRNVMPYASILSIIVDLL 242
           +  + P  ++ S +V  L
Sbjct: 607 ETGLTPDDTVYSSLVGSL 624



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  + +   Y +II   C+ G V +A  LF +M D+ + P+  TY +LIHG C A 
Sbjct: 326 REKGI--EADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAG 383

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A+ L  EM  +G+  + V FN ++D  C++  +DEA RL  +M + G+  D F   
Sbjct: 384 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVF--- 440

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
              AY  +  GLCK+ +   A+ L  S+   G+ PN +++   I   C +    +A  +F
Sbjct: 441 ---AYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVF 497

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +ME KG  PN + +  L+  + ++    +  +L   ++ R ++P
Sbjct: 498 REMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIP 542



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N VTYN  I+G  K   +    E+   M+ E +  NVVTY  LIHGF       EA+ 
Sbjct: 261 KANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQR 320

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM ++G+++DV  +  I+   C++  +  A  L D M   G+ P A        YG 
Sbjct: 321 LFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAH------TYGA 374

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G+CK G+++ A+ L   +   G+  N V +N  I   C    +D+A  L + ME KG
Sbjct: 375 LIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKG 434

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  +   + ++     + N   +   LL SM +R V P     + ++D+  K
Sbjct: 435 LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCK 486



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 12/230 (5%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND-GNEAEYLFIEMMDR 80
           ++DGLCK G V+  ++L  ++  + +  NVVTYN+ I G+    D G  AE L + M   
Sbjct: 235 VLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTL-MEKE 293

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G+  +VVT+ +++       K++EA RL + M + G+  D +       Y  +I   C+ 
Sbjct: 294 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVY------VYTSIISCNCRS 347

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G +K A  L   +T  GL+P+  TY   IH +C   QM+ A  L  +M+ KG+  N VIF
Sbjct: 348 GNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIF 407

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSIIVDLLVKNE 246
            TL+  +       + + L   M+K+    +V  Y SI S +  L  K+E
Sbjct: 408 NTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDE 457



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 10/173 (5%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA   F  M  +G   D  +  V +  L +  ++D   R    M+   V      E+ +
Sbjct: 176 GEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDV------EVTV 229

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            +   ++DGLCK G ++  R+L   +   G+  NVVTYN  I        +    ++   
Sbjct: 230 YSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTL 289

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
           ME +GVA N V +T L+  F    +  +   L   M ++    +V  Y SI+S
Sbjct: 290 MEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIIS 342


>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
          Length = 667

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 7/220 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDGNEA 70
           C+P+ VTYN  ++  C  G + +A++L  +M+   I NP+  +YN ++ G C A+  + A
Sbjct: 402 CEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYNQMLKGLCKAHQLDRA 461

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                + M+ G   D+V+ N+++D  CK +K+  A +L   M   G++ DA      V Y
Sbjct: 462 FGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADA------VTY 515

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           G LI+GL  +G    A E+ + + +A ++PNV  YNI +H LC   Q ++A  +FL M  
Sbjct: 516 GTLINGLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQ 575

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           K V+P+ + F TL+    + +   + I+L R M  R + P
Sbjct: 576 KEVSPDIITFNTLIYWLGKCSRAIEAIDLFRDMTARGIEP 615



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 7/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V    +I GLCK   VD+A EL L+M   N+  NV  YN+LI GF  +   N+A  
Sbjct: 333 KPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSINKAFK 392

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM-IQGGVRPDAFCEINIVAYG 131
           +   M   G + DVVT+N+ ++  C    + EA +L++ M + G V PD +      +Y 
Sbjct: 393 IISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRY------SYN 446

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ GLCK  +L  A          G   ++V+ NI I A C  +++  A  LF +M  K
Sbjct: 447 QMLKGLCKAHQLDRAFGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYK 506

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+  + V + TL+             E+   M K  V+P  ++ +I++  L K
Sbjct: 507 GIQADAVTYGTLINGLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCK 559



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG  C P+    N  +D LCK   +  A +    M     NP+VVTY +++   C    
Sbjct: 259 KFG--CFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQ 316

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA  L+ EM+ RGL+ D+V   V++  LCK+ K+DEA  L   M+   +      E+N
Sbjct: 317 FAEAVELWEEMVRRGLKPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNL------ELN 370

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LI G  + G +  A ++   +   G  P+VVTYNI ++  CN   + +A  L  
Sbjct: 371 VCIYNALISGFLRSGSINKAFKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIE 430

Query: 187 DMEVKGVA-PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS--IIVDLLV 243
           +ME+ G+  P+   +  ++    + ++  +    +   D   V  +  I+S  I++D   
Sbjct: 431 EMEMSGIVNPDRYSYNQMLKGLCKAHQLDRAFGFVS--DHMEVGGFCDIVSCNILIDAFC 488

Query: 244 K 244
           K
Sbjct: 489 K 489



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + +G REFGV        YN  I  L K    D  ++ +    D+       TY+  I  
Sbjct: 188 VTSGCREFGV-------DYNRFIGVLVKNCCFDLVEKYYSVALDKGFCLTSFTYSRWISA 240

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C +      E L  +M   G   D+   N+ +D LCK+ ++ +A + L+ M   G  PD
Sbjct: 241 LCQSERIELVERLLADMDKFGCFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPD 300

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 +V Y  ++  LC   +   A EL + + R GL P++V   + I  LC  +++D+
Sbjct: 301 ------VVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGVLIFGLCKSDKVDE 354

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A +L L M    +  N  I+  L+  F+R    +K  +++  M      P
Sbjct: 355 AFELALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNGCEP 404



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 6/215 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            + TY+  I  LC+   ++  + L   M      P++   N  +   C  N  ++A    
Sbjct: 230 TSFTYSRWISALCQSERIELVERLLADMDKFGCFPDIWACNIYVDCLCKHNRLHDALKTL 289

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  RG   DVVT+  ++  LC N++  EA  L + M++ G++PD      IVA G LI
Sbjct: 290 ENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPD------IVACGVLI 343

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLCK  K+  A EL+  +    L  NV  YN  I        ++KA  +   M   G  
Sbjct: 344 FGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNGCE 403

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           P+ V +   +  +       +  +L+  M+   ++
Sbjct: 404 PDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGIV 438



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + VTY T+I+GL   G+   A+E+F QM    + PNV  YN ++H  C A    +A+ 
Sbjct: 509 QADAVTYGTLINGLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQK 568

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F++M+ + +  D++TFN ++  L K  +  EA  L   M   G+ PD+      + +  
Sbjct: 569 IFLQMIQKEVSPDIITFNTLIYWLGKCSRAIEAIDLFRDMTARGIEPDS------LTFRY 622

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLM 159
           LI GL + GK   A E+ + +   G++
Sbjct: 623 LISGLLEEGKATQAYEVWEYMLENGII 649



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 83/194 (42%), Gaps = 6/194 (3%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           E   +++ + +  +   Y  L+ G+  A   +   + F EM+  G +   V +N  +  L
Sbjct: 147 EFLERVRSQGVALHRSLYRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVDYNRFIGVL 206

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            KN   D   +   + +  G     FC +    Y   I  LC+  +++    L   + + 
Sbjct: 207 VKNCCFDLVEKYYSVALDKG-----FC-LTSFTYSRWISALCQSERIELVERLLADMDKF 260

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P++   NI +  LC   ++  A     +M ++G  P+ V +TT++       + ++ 
Sbjct: 261 GCFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEA 320

Query: 217 IELLRSMDKRNVMP 230
           +EL   M +R + P
Sbjct: 321 VELWEEMVRRGLKP 334


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 106/191 (55%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 243 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 302

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 303 IDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDD------VAYTAL 356

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  DM+  G 
Sbjct: 357 ISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGH 416

Query: 194 APNCVIFTTLM 204
           AP+ V +  LM
Sbjct: 417 APSVVTYNVLM 427



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 125/222 (56%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D NE   L   M+
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXP------NGVTFTTLIDGHC 256

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AHDL  +M +KG+  + +
Sbjct: 257 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKI 316

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 317 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALIS 358



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +++   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 172 RPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 231

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 232 LFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD------LITYNT 285

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL  + +TY   I   C +  +D A +    M  + 
Sbjct: 286 LIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQEN 345

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 346 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKK 398



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+T TY  II+  CK+G V K  +L   M+     P+VVTYN L++G
Sbjct: 382 KPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 10/238 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + ++YN +  GLCK   +D+A  +F +M++  + P+++TYN L++G+C A    +A 
Sbjct: 137 CSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAM 196

Query: 72  YLFIEMMDRGLQSDVV----TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            L  EM++    SDVV    ++N ++   CK R++  A  +L  MI+ G  P      N+
Sbjct: 197 TLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSP------NV 250

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V +  L+DGLC  GKL  A  + + +      P  VTY + I       ++DKA+D F+D
Sbjct: 251 VTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVD 310

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           M  +GV PN   +T L+      N+    +E+L+ M      P     + ++  L K 
Sbjct: 311 MLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKG 368



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 13/251 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQM----KDENINPNVVTYNSLIHGFCYANDGNE 69
           P+ +TYN ++ G C+ G +++A  L  +M    K  ++ P++ +YN++I GFC A     
Sbjct: 174 PSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPT 233

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A Y+   M+  G   +VVTFN ++D LC   K+DEA  + + M++        CE   V 
Sbjct: 234 ARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERN------CEPTAVT 287

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI G  +  ++  A +    + R G+ PNV TY   I  LC+  +++ A ++   M 
Sbjct: 288 YTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMS 347

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLR-SMDKRNV--MPYASILSIIVDLLVKNE 246
             G  PN V +T ++ +  +  +  +  +L   +M  R     P +   S I+  L +  
Sbjct: 348 STGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQS 407

Query: 247 ISLNSIPQFNR 257
             L +   F R
Sbjct: 408 KFLEAYEYFLR 418



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 9/208 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+NT++DGLC  G +D+A  +F  M + N  P  VTY  LI G   A   ++A 
Sbjct: 246 CSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKAN 305

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F++M+ RG++ +V T+  ++  LC   K+++A  +L  M   G  P      N+V Y 
Sbjct: 306 DYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREP------NVVTYT 359

Query: 132 CLIDGLCKIGKLKNAREL---SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +I  LCK G+++ A +L   +     A   P+   Y+  I+ LC   +  +A++ FL M
Sbjct: 360 RVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRM 419

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKV 216
               +     I+  +        ET KV
Sbjct: 420 VESKLVAKPHIYKAMADGLELVQETEKV 447



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P  VTY  +I G  +   +DKA + F+ M    + PNV TY +LI G C AN   +A 
Sbjct: 281 CEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDAL 340

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAY 130
            +   M   G + +VVT+  ++  LCK  +++ AT+L  D M   G R  A C+ +  AY
Sbjct: 341 EILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAM---GSR-TAKCKPDSYAY 396

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I  LC+  K   A E    +  + L+     Y      L   ++ +K   + L+   
Sbjct: 397 STIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEKVERVCLEASA 456

Query: 191 KGV 193
            G+
Sbjct: 457 HGI 459



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 13/230 (5%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TYN  ++ L K G   KA+++F  M  +   PN+ TY  ++ G C     + A  L  +M
Sbjct: 39  TYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDM 98

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             + L       N+++  LCKN K+D A  L         R    C ++ ++Y  L  GL
Sbjct: 99  ESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYK-------RLSDECSLDRISYNMLTYGL 151

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG----- 192
           CK  ++  A  +   +    ++P+++TYN  ++  C   +M++A  L  +M ++G     
Sbjct: 152 CKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEM-IEGKKGSD 210

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           V P+   + T++  F +  +      +LR M K    P     + ++D L
Sbjct: 211 VVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGL 260



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           ++ +L   + +   R + F E  +  Y   ++ L K G    AR++   +     +PN+ 
Sbjct: 15  KSPKLASRVFKWAARQEDF-EHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIY 73

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY I +  LC+D + D A +L  DME K + P   I   L+    +  +     EL + +
Sbjct: 74  TYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRL 133



 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%)

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            V TYN  ++AL       KA  +F DM  K   PN   +  ++       +T   +ELL
Sbjct: 36  TVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELL 95

Query: 221 RSMDKRNVMPYASILSIIVDLLVKN 245
           + M+ + + P   I++++V  L KN
Sbjct: 96  QDMESKMLTPTTFIVNMLVSCLCKN 120



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 36/72 (50%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP++  Y+TII  LC++    +A E FL+M +  +      Y ++  G     +  + E
Sbjct: 389 CKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEKVE 448

Query: 72  YLFIEMMDRGLQ 83
            + +E    G++
Sbjct: 449 RVCLEASAHGIE 460


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 122/238 (51%), Gaps = 8/238 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  P+  TYN +IDG CKEG V+ A+E+   M   + NPN  TYN LI GFC   +
Sbjct: 137 EKGLV--PSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKN 194

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A  L  +M++  L   VVT+N ++   CK   +D A RLL+LM + GV PD +    
Sbjct: 195 VHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQW---- 250

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y   ID LCK G+++ A  L  SL   G+  N V Y   I   C   +MD A+ L  
Sbjct: 251 --TYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLD 308

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            M  +   PN   +  L+    ++ +  + + L+ SM ++ +       +I++  ++K
Sbjct: 309 RMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLK 366



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 125/258 (48%), Gaps = 29/258 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TYN +I G C++  V +A  L  +M +  + P+VVTYNSLIHG C     + A 
Sbjct: 175 CNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAY 234

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAF 122
            L   M + G+  D  T++V +D LCK  +++EA  L + + + G++          D +
Sbjct: 235 RLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGY 294

Query: 123 CEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C+                     N   Y  LIDGLCK  K++ A  L +S+ + GL   V
Sbjct: 295 CKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTV 354

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            TY I I A+  +   D AH +   M   G  P+  I+T  + +F  +    +  +++  
Sbjct: 355 PTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSM 414

Query: 223 MDKRNVMPYASILSIIVD 240
           M +R VMP A   ++++D
Sbjct: 415 MFERGVMPDALTYTLVID 432



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N V+Y  +I GLC+ G VD+   +F +M++++  P V TY  ++H    +    EA 
Sbjct: 35  CRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAI 94

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM +RG + ++ T+ V+++ +CK  K++E  R+LD M++ G+ P      ++  Y 
Sbjct: 95  NLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVP------SVPTYN 148

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK G ++ A+E+   +      PN  TYN  I   C  + + +A  L   M   
Sbjct: 149 ALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLES 208

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + P+ V + +L+    +         LL  M++  V+P     S+ +D L K
Sbjct: 209 RLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCK 261



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 8/242 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GVV  P+  TY+  ID LCK+G +++A  LF  +K++ I  N V Y +LI G+C A  
Sbjct: 242 ENGVV--PDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGK 299

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++A  L   M+      +  T+N ++D LCK RK+ EA  L++ MIQ G++        
Sbjct: 300 MDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLK------CT 353

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LI  + K G    A  +   +  +G  P+V  Y   IHA C    + +A D+  
Sbjct: 354 VPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMS 413

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M  +GV P+ + +T ++ ++      +   ++L+ M      P     S ++  L+K E
Sbjct: 414 MMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEE 473

Query: 247 IS 248
           ++
Sbjct: 474 LT 475



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 8/213 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  +E G+  K N V Y  +IDG CK G +D A  L  +M  E+  PN  TYN+LI G C
Sbjct: 273 NSLKEKGI--KANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLC 330

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 EA  L   M+ +GL+  V T+ +++  + K    D A R+LD M+  G +PD +
Sbjct: 331 KERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVY 390

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                  Y   I   C  G +K A ++   +   G+MP+ +TY + I A      ++ A 
Sbjct: 391 ------IYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAF 444

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
           D+   M   G  P+   ++ L+   +++  T K
Sbjct: 445 DVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKK 477



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 58/285 (20%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+ TYN +IDGLCKE  V +A  L   M  + +   V TY  LI       D + A 
Sbjct: 315 CLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAH 374

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--------- 122
            +  +M+  G Q DV  +   +   C    + EA  ++ +M + GV PDA          
Sbjct: 375 RILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAY 434

Query: 123 --------------------CEINIVAYGCLID--------------GLC---------- 138
                               C+ +   Y CLI                LC          
Sbjct: 435 GGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFAD 494

Query: 139 -----KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
                K+ K + A EL + +   G  PN+ TY   I  LC   ++  A  LF  M  +GV
Sbjct: 495 VADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGV 554

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           +P+  I+ +L+            + L+ +M +   +P    L+++
Sbjct: 555 SPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVL 599



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY  +I GLCK G +  A++LF  M +  ++P+   YNSL++  C      +A 
Sbjct: 519 CSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAV 578

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM+ G    + + NV+   L +    ++A  +   ++Q G   D       VA+ 
Sbjct: 579 RLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDE------VAWK 632

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            LIDGL K G      EL   +   G   +  TY + I  L
Sbjct: 633 ILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 35/216 (16%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAK----------------------------- 36
           R F   C P+  TY+ +I  L KE    K K                             
Sbjct: 449 RMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETAL 508

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           ELF +M +   +PN+ TY  LI G C       A+ LF  M +RG+      +N +++  
Sbjct: 509 ELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCC 568

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C+     +A RL+  M++ G  P     +N+     L  GL + G  + A+ +  +L + 
Sbjct: 569 CELGIYGDAVRLVGAMMEHGHLP-LLESLNV-----LFCGLYEEGSKEKAKVVFSNLLQC 622

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           G   + V + I I  L  +   D   +L   ME +G
Sbjct: 623 GYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARG 658



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 61/122 (50%)

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           P   C  N V+Y  LI GLC++G++     + + +      P V TY + +HAL    + 
Sbjct: 31  PKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRR 90

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            +A +LF +M  +G  PN   +T ++ +  ++ +  +   +L  M ++ ++P     + +
Sbjct: 91  MEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNAL 150

Query: 239 VD 240
           +D
Sbjct: 151 ID 152



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 37/265 (13%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---- 62
           E GV+  P+ +TY  +ID     G ++ A ++  +M D   +P+  TY+ LI        
Sbjct: 417 ERGVM--PDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEEL 474

Query: 63  ---YANDG----------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
              Y N                          A  LF +M++ G   ++ T+  ++  LC
Sbjct: 475 TKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLC 534

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  ++  A +L D M + GV P          Y  L++  C++G   +A  L  ++   G
Sbjct: 535 KVGRLGVAQKLFDHMNERGVSPSE------AIYNSLLNCCCELGIYGDAVRLVGAMMEHG 588

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
            +P + + N+    L  +   +KA  +F ++   G   + V +  L+   ++   +    
Sbjct: 589 HLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCS 648

Query: 218 ELLRSMDKRNVMPYASILSIIVDLL 242
           ELL  M+ R    +     ++++ L
Sbjct: 649 ELLGVMEARGCQIHPQTYRMLIEGL 673



 Score = 43.5 bits (101), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 133 LIDGLCKIGKLKNAR---ELSQSLTRAGLMP------NVVTYNITIHALCNDEQMDKAHD 183
           +++G CK+G L  A    +++ + +   +MP      N V+Y   IH LC   ++D+  +
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +F  M      P    +T ++ +        + I L   M +R   P     +++++ + 
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 244 K 244
           K
Sbjct: 121 K 121


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 127/255 (49%), Gaps = 29/255 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V YN+++ GLC+ G VD A+++   MK + + PNVVTY   I  +C  N  ++A  L+
Sbjct: 208 DVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLY 267

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--AFCEI------- 125
            EM+ +G+  DVVT + ++  LCK+ +  EA  L   M + G  P+   +C +       
Sbjct: 268 EEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKA 327

Query: 126 --------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                               +++ Y  L+D LCK GK+  A+++ +        PN VTY
Sbjct: 328 QRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTY 387

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            + I ALC    +D A  +  +ME K ++PN V F++++   +++    K  + +R M +
Sbjct: 388 TVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKE 447

Query: 226 RNVMPYASILSIIVD 240
           R + P       ++D
Sbjct: 448 RGIDPNVVTYGTVID 462



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 128/252 (50%), Gaps = 41/252 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +ID LCK G VD A+++  +M++++I+PNVVT++S+I+G        +A   
Sbjct: 382 PNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDY 441

Query: 74  FIEMMDRGLQSDVVTFNVIMDE-----------------LC------------------K 98
             EM +RG+  +VVT+  ++D                  LC                  K
Sbjct: 442 MREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKK 501

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
           N K+++A  L   M + GV  D       V Y  LIDGL K G L  A ++ Q LT   L
Sbjct: 502 NGKIEKAEALFREMNERGVLLDH------VNYTTLIDGLFKTGNLPAAFKVGQELTEKNL 555

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +P+ V YN+ I+ LC   +  +A     +M+  G+ P+ V + T++ +  R+ +T+K ++
Sbjct: 556 LPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALK 615

Query: 219 LLRSMDKRNVMP 230
           LL  M + ++ P
Sbjct: 616 LLNGMKRSSIKP 627



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 100/191 (52%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT + ++ GLCK+G   +A  LF +M+     PN VTY  LI     A  GNE+  L
Sbjct: 277 PDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSL 336

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E++ RG+  D++ +  +MD LCK  K+DEA  +    +     P      N V Y  L
Sbjct: 337 LGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTP------NGVTYTVL 390

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK G +  A ++   +    + PNVVT++  I+ L     + KA D   +M+ +G+
Sbjct: 391 IDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGI 450

Query: 194 APNCVIFTTLM 204
            PN V + T++
Sbjct: 451 DPNVVTYGTVI 461



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELF-LQMKDENINP-NVVTYNSLIHGFCYANDGNEAEY 72
           + VT NT++ GLC++G VD+A  L  + ++   I   +VV +NSL+ G+C   D   A  
Sbjct: 136 DAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFA 195

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M  +G+  DVV +N ++  LC+  ++D A  ++D M + GV P      N+V Y  
Sbjct: 196 VAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEP------NVVTYTM 249

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I   C+   + +A  L + + R G++P+VVT +  +  LC D +  +A+ LF +ME  G
Sbjct: 250 FIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIG 309

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            APN V +  L+ +  +    ++ + LL  +  R V+    + + ++D L K
Sbjct: 310 AAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCK 361



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 5/196 (2%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           + V+YN ++ GF     G   E L  EM  RG+  D VT N ++  LC++ ++D A  L 
Sbjct: 102 DTVSYNVVMSGFS-EQGGLAPEALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALA 160

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           ++M++GG        +++V +  L+DG CK+G ++ A  +++ +   G+  +VV YN  +
Sbjct: 161 EVMVRGG----GIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLV 216

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             LC   ++D A D+   M+  GV PN V +T  +  + R+N       L   M ++ V+
Sbjct: 217 AGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVL 276

Query: 230 PYASILSIIVDLLVKN 245
           P    LS +V  L K+
Sbjct: 277 PDVVTLSALVGGLCKD 292



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 111/252 (44%), Gaps = 41/252 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG------------- 60
           PN VT+++II+GL K G+V KA +   +MK+  I+PNVVTY ++I G             
Sbjct: 417 PNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDV 476

Query: 61  ----FCYANDGNE------------------AEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                C   + N+                  AE LF EM +RG+  D V +  ++D L K
Sbjct: 477 YHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFK 536

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              +  A ++   + +  + PDA      V Y   I+ LC +GK K A    + +   GL
Sbjct: 537 TGNLPAAFKVGQELTEKNLLPDA------VVYNVFINCLCMLGKSKEAESFLEEMQSTGL 590

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+ VTYN  I A   + +  KA  L   M+   + PN + ++TL+          K   
Sbjct: 591 KPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKY 650

Query: 219 LLRSMDKRNVMP 230
           LL  M      P
Sbjct: 651 LLNEMSSSGFSP 662



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + Y  ++D LCKEG +D+AK++F     +N  PN VTY  LI   C A + + AE +  E
Sbjct: 350 IMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSE 409

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M ++ +  +VVTF+ I++ L K   + +AT  +  M + G+ P      N+V YG +IDG
Sbjct: 410 MEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDP------NVVTYGTVIDG 463

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
             K    + A ++   +   G+  N    +  ++ L  + +++KA  LF +M  +GV  +
Sbjct: 464 SFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLD 523

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            V +TTL+    +        ++ + + ++N++P A + ++ ++ L
Sbjct: 524 HVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCL 569



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+I    +EG   KA +L   MK  +I PN++TY++LI G   A    +A+Y
Sbjct: 591 KPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKY 650

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G     +T   ++    + R+ D    + + M+  G+  D      I  Y  
Sbjct: 651 LLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCAD------ITVYNT 704

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  LC  G  + A  + + ++  G+ P+ +T+N  I        +D A   +  M   G
Sbjct: 705 LVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHG 764

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           ++PN   F TL+          +   +L  M KR + P      I+V
Sbjct: 765 ISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILV 811



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 6/212 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T+T+N +I G  K G +D A   + QM    I+PNV T+N+L+ G   A    E++ +
Sbjct: 732 PDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMV 791

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  RG++   +T+++++    K     EA RL   M+  G  P       +  Y  L
Sbjct: 792 LNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLP------KVSTYNAL 845

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I    K+G +  A+EL   +   G++P   TY+I +          +      DM+ KG 
Sbjct: 846 ISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGF 905

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           +P+    +++  +F +   + +   LL+++ K
Sbjct: 906 SPSKGTLSSISRAFSKPGMSWEARRLLKNLYK 937



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 7/241 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C   TV YNT++  LC  G   KA  +  +M    I P+ +T+N+LI G   +   + A
Sbjct: 695 LCADITV-YNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNA 753

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              + +M+  G+  +V TFN ++  L    ++ E+  +L+ M + G+ P          Y
Sbjct: 754 FSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNL------TY 807

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L+ G  K      A  L   +   G +P V TYN  I        M +A +LF +M+ 
Sbjct: 808 DILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQN 867

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
           +GV P    +  L+  + +    ++V + L+ M ++   P    LS I     K  +S  
Sbjct: 868 RGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWE 927

Query: 251 S 251
           +
Sbjct: 928 A 928


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYNT+ID LC  G + KA +L   M+      + +TYN++I G C      EAE
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M  +G+  + +TFN ++D LCK++K+D+A  L++ MI  G++P      N + Y 
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQP------NNITYN 535

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++   CK G +K A ++ +++T  G   +VVTY   I+ LC   +   A  +   M +K
Sbjct: 536 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 595

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+ P    +  ++ S  R+N     + L R M +    P A    I+
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIV 642



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYNT ++GLC+   V  A ++   M  E  +P+V TYN +++  C      EA+ 
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+DRG   D+ TFN ++  LC   +++EA  L   +   GV PD +       +  
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVY------TFNI 396

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+ LCK+G    A  L + +  +G  P+ VTYN  I  LC+  ++ KA DL  DME  G
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              + + + T++    +K    +  E+   MD + +   A   + ++D L K++
Sbjct: 457 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 510



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T+TYNTIIDGLCK+  +++A+E+F QM  + I+ N +T+N+LI G C     ++A 
Sbjct: 457 CPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAF 516

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  GLQ + +T+N I+   CK   + +A  +L+ M   G       E+++V YG
Sbjct: 517 GLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF------EVDVVTYG 570

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK G+ + A ++ + +   G+ P    YN  + +L     +  A  LF +M   
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 192 GVAPNCVIFTTLMPSFIRKNETSK-VIELLRSMDKRNVMPYASILSIIVDLLV 243
           G  P+ + +  +     R     K   + +  M  +  +P  S   ++ + L+
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 683



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C    VT N +I+G CK G V+ A     Q   +   P+ +TYN+ ++G C  +    A 
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G   DV T+N++++ LCKN +++EA  +L+ M+  G  PD      I  + 
Sbjct: 307 KVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD------ITTFN 360

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC   +L+ A +L++ +T  G+ P+V T+NI I+ALC       A  LF +M+  
Sbjct: 361 TLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNS 420

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASIL 235
           G  P+ V + TL+ +     +  K ++LL+ M+     R+ + Y +I+
Sbjct: 421 GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTII 468



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P+  T+ T++ G  +EG ++ A  +  +M +   +   VT N LI+G+C      +A  Y
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  E+ D G + D +T+N  ++ LC+N  +  A +++D+M+Q G  PD F       Y  
Sbjct: 274 IQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF------TYNI 326

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ LCK G+L+ A+ +   +   G +P++ T+N  I ALC   ++++A DL   + VKG
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 386

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V+P+   F  L+ +  +  +    + L   M      P     + ++D
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT+NT++  LC+   V  A  +  +M    + P+  T+ +L+ GF        A  
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M++ G  +  VT NV+++  CK  ++++A   +   I  G  PD       + Y  
Sbjct: 238 VKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ------ITYNT 291

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            ++GLC+   + +A ++   + + G  P+V TYNI ++ LC + Q+++A  +   M  +G
Sbjct: 292 FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG 351

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+   F TL+ +    N   + ++L R +  + V P     +I+++ L K
Sbjct: 352 CLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 4/179 (2%)

Query: 45  ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
           ++  P    Y  +I         +  + L  EM   G Q  +   +  +D     +  D+
Sbjct: 68  DDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDD 127

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           A  L    I   ++P    + + V Y  L++ L +  K+K    +   +   G+ P+VVT
Sbjct: 128 AVDL----ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVT 183

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +N  + ALC   Q+  A  +  +M  +GVAP+   FTTLM  F+ +      + +   M
Sbjct: 184 FNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 242



 Score = 40.8 bits (94), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NEAE 71
           +P    YN ++  L +   +  A  LF +M +    P+ +TY  +  G C       EA 
Sbjct: 598 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAF 657

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
              +EM+D+G   +  +F ++ + L  N  MD+
Sbjct: 658 DFMLEMVDKGFIPEFSSFRMLAEGLL-NLGMDD 689


>gi|115457858|ref|NP_001052529.1| Os04g0350000 [Oryza sativa Japonica Group]
 gi|113564100|dbj|BAF14443.1| Os04g0350000, partial [Oryza sativa Japonica Group]
          Length = 263

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 6/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
            V  +P+  TYNT++DG CK G +D A  LF  M  + +    V+YN ++HG   A    
Sbjct: 6   SVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTI 65

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A+ +F EM++ G+   + T+  ++  LC+N   DEA  LL+ +    V+ D      I+
Sbjct: 66  VAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFD------IL 119

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  +I  + K+G+ + A+EL  +++  GL+P ++TY + I  L  +E  + A +LF  M
Sbjct: 120 TFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM 179

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           E     P+  I   ++   + K E +K    L  +DK+ ++P A+  S+++ L   N
Sbjct: 180 EKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVN 236



 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K + +T+N +I  + K G   +AKELF  +    + P ++TY  +I         
Sbjct: 110 FSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESF 169

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            +A+ LF  M       D    N I+  L    ++ +A   L  + + G+ P+A
Sbjct: 170 EDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEA 223


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN++I G C+EG + +A +LF  +KD  + PN VTY SLI G+C  ND +EA  L
Sbjct: 274 PDIFTYNSLIYGFCREGRMREAVQLFRDIKD--VTPNHVTYTSLIDGYCRVNDLDEALRL 331

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M ++GL   V+T+N I+ +LC+  ++ +A  LL+ M +  + PD       V    L
Sbjct: 332 KEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDN------VTCNTL 385

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CKIG +++A ++   +  AGL  +  TY   IH  C  +++DKA +L   M   G 
Sbjct: 386 INAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGF 445

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +P+   ++ L+ S+ ++     VI+L   + +R +    S+   ++    K E
Sbjct: 446 SPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIE 498



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 6/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYN+I+  LC+ G +  A  L  +M +  I P+ VT N+LI+ +C   D   A  +
Sbjct: 342 PTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKV 401

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  GL+ D  T+  ++   CK +++D+A  LL  M+  G  P ++C      Y  L
Sbjct: 402 KDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSP-SYC-----TYSWL 455

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +D  CK    +   +L   L R GL  +V  Y   I   C  E++D A  +   M+ KG+
Sbjct: 456 VDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGI 515

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             + V++T+L   + +  + +   ++L  M K+ +M
Sbjct: 516 FGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKKRLM 551



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 12/206 (5%)

Query: 34  KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           +A ++F  M+     P++     L++        +    ++ +M+  G+ +++  +NV++
Sbjct: 154 EAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLL 213

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
              CK+  +++A ++L  M    V PD F       Y  LI   CK G    A  +   +
Sbjct: 214 HACCKSGDVEKAEKVLSEMELKCVFPDLF------TYNTLISLYCKKGMHYEALSVQDRM 267

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
             AG+ P++ TYN  I+  C + +M +A  LF D  +K V PN V +T+L+  + R N+ 
Sbjct: 268 EMAGISPDIFTYNSLIYGFCREGRMREAVQLFRD--IKDVTPNHVTYTSLIDGYCRVNDL 325

Query: 214 SKVIELLRSMDKRNVMP----YASIL 235
            + + L   M ++ + P    Y SIL
Sbjct: 326 DEALRLKEVMSEKGLYPTVITYNSIL 351



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 6/157 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   K +  TY  +I G CK   +DKAKEL   M D   +P+  TY+ L+  +C   +  
Sbjct: 407 GAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEE 466

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
               L  E++ RGL  DV  +  ++   CK  K+D A R+L LM   G+  D+      V
Sbjct: 467 AVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDS------V 520

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
            Y  L  G  K+GK+    ++   + +  LM  +  Y
Sbjct: 521 VYTSLAYGYWKVGKVNVTSDILDEMYKKRLMITLKIY 557



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 6/200 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT NT+I+  CK G +  A ++  +M    +  +  TY +LIHGFC A + ++A+ 
Sbjct: 376 EPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKE 435

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   MMD G      T++ ++D  CK +  +   +L D +++ G+     C +++  Y  
Sbjct: 436 LLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGL-----C-VDVSVYRA 489

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   CKI K+  A+ +   +   G+  + V Y    +      +++   D+  +M  K 
Sbjct: 490 LIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKKR 549

Query: 193 VAPNCVIFTTLMPSFIRKNE 212
           +     I+ +   S+   N 
Sbjct: 550 LMITLKIYRSFNASYASDNS 569



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 10/153 (6%)

Query: 79  DRGLQSDVVTFNVIMDELCKNRKM-DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           D  + S V+++ VI   +  N KM  EA ++ + M   G RP      ++ A   L++ L
Sbjct: 131 DPDVNSHVLSWLVI---VYGNSKMTHEAIQVFEHMRVNGFRP------HLHACTVLLNSL 181

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
            K        ++ + + + G++ N+  YN+ +HA C    ++KA  +  +ME+K V P+ 
Sbjct: 182 AKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDL 241

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             + TL+  + +K    + + +   M+   + P
Sbjct: 242 FTYNTLISLYCKKGMHYEALSVQDRMEMAGISP 274


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 120/239 (50%), Gaps = 8/239 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G  C P+T TYN++I GL K G   KA EL  +M+     P+V+TY+SLI G     
Sbjct: 141 RERG--CVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDG 198

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           +  +A  LF EM  RG + D +TF  +MD L K  ++D+A  LLD M + GV+P      
Sbjct: 199 ETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKP------ 252

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y  LI G  K+G L  A  L   + R G  P+VVTY+  I  L    Q+D+A  + 
Sbjct: 253 GVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVL 312

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             ME +G  P+ + + TL+    +    +    L   M  +   P     S ++  L K
Sbjct: 313 KKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGK 371



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T+TYNT+I+GL K G ++ A  LF +MK +  NP+VVTY++LI     A     A 
Sbjct: 320 CPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESAC 379

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM   G+Q D+ T+  I+  L K  ++D+A RL   M   G+ PD      ++ Y 
Sbjct: 380 VLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPD------VITYN 433

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             ++ L + G+ K AR++ + +  +GL+P+V TY+  +  L   +++D A  L  ++  +
Sbjct: 434 AFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQ 493

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G A + + F   +          +  ELL+  + + + P AS  + ++D L K
Sbjct: 494 GCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAK 546



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN++++ L K G  ++A+ LF ++K     P+VV+Y+ LI+    A     A  +
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G + ++ T+N ++D L K  + DEA RLL  M   G  PD      +  Y CL
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPD------VRTYNCL 120

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  L K G+L  A  L   +   G +P+  TYN  I+ L    +  KA +L  +ME  G 
Sbjct: 121 ISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGC 180

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ + +++L+    +  ET K  +L + M +R   P +   + ++D L K
Sbjct: 181 PPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGK 231



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+++T+  ++D L K G VD A EL  +MK+  + P VVTYN+LI GF    D  EA  
Sbjct: 216 KPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYN 275

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G + DVVT++ ++  L K  ++DEA ++L  M + G  PD       + Y  
Sbjct: 276 LLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPD------TITYNT 329

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GL K G L +A  L   +   G  P+VVTY+  I AL    +++ A  LF +ME  G
Sbjct: 330 LINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVG 389

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + +++    +  +      L   M  + + P
Sbjct: 390 IQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSP 427



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  TYNT++D L K G  D+A  L  +M+D    P+V TYN LI     A   +EA 
Sbjct: 75  CKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAF 134

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM +RG   D  T+N ++  L K  +  +A  LL+ M + G  PD      ++ Y 
Sbjct: 135 TLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPD------VMTYS 188

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GL K G+   A +L Q + R G  P+ +T+   + AL    ++D A +L  +M+ +
Sbjct: 189 SLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKER 248

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           GV P  V +  L+  F +  +  +   LL  M +    P     S ++  L+K
Sbjct: 249 GVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIK 301



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 6/219 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  +P+  TY +II  L K G VD A  LF +M+ + ++P+V+TYN+ ++         E
Sbjct: 388 VGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKE 447

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  +F +M + GL  DV T++ ++  L K +++D+A  LL  +I+ G      C  + + 
Sbjct: 448 ARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQG------CAFDSLK 501

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +   ++ L   G +  A EL Q     GL P   +YN  I AL    ++ +A +   D++
Sbjct: 502 FDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLK 561

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +G  P+ V +++L+ +  +  +     ELL  M KR +
Sbjct: 562 EQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGL 600



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 6/212 (2%)

Query: 48  NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
           +PNVVTYNSL++    A    EA+ LF E+       DVV+++ +++ L +  K + A  
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           ++  M   G +P      N+  Y  L+D L K G+   A  L   +   G +P+V TYN 
Sbjct: 66  VVAEMQAKGCKP------NLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNC 119

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I  L    ++ +A  LF +M  +G  P+   + +L+    +   + K +ELL  M++  
Sbjct: 120 LISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG 179

Query: 228 VMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
             P     S ++  L K+  ++ +   F   K
Sbjct: 180 CPPDVMTYSSLITGLGKDGETVKAFKLFQEMK 211



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 57/107 (53%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +++ ++  ++ L   G VD+A EL      + + P   +YN+LI     A   +EA 
Sbjct: 495 CAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAF 554

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
               ++ ++G + D+V+++ ++  L +  ++D A  LL+ M + G++
Sbjct: 555 NTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLK 601



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   +YN +ID L K G V +A      +K++   P++V+Y+SLI         + A  L
Sbjct: 532 PGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFEL 591

Query: 74  FIEMMDRGLQSDVVTFNVIMDEL 96
             EM  RGL+    +++ ++ +L
Sbjct: 592 LEEMSKRGLKLSPRSYSNLVRKL 614


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 126/274 (45%), Gaps = 41/274 (14%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE     KP+   YN +IDG+CKEG ++ A +L  +M D  ++PNVV+Y+ +I+  C + 
Sbjct: 234 RELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSG 293

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           +   A  LF +M  RG  +++ TF  ++       K+ EA  L  LMIQ G      CE 
Sbjct: 294 NVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG------CEP 347

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA-------------- 171
           N+VAY  LI GLC  G L+ A ++   + R+G +PNV TY+I I                
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETW 407

Query: 172 ---------------------LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                                LC +   D+A+ L   M ++G  PN + F T +      
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGN 467

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
                 ++LL  M     +P  +  + ++D L +
Sbjct: 468 GRVEWAMKLLERMQGHGCLPNITTYNELLDALFR 501



 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN V YNT+I GLC  G +++A ++  QM+     PNV TY+ LI GF  + D   A 
Sbjct: 345 CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGAS 404

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +  M+  G + +VVT+  ++D LCKN   D+A  L++ M   G  P      N + + 
Sbjct: 405 ETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTP------NTITFN 458

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             I GLC  G+++ A +L + +   G +PN+ TYN  + AL    + ++A  LF ++E +
Sbjct: 459 TFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEAR 518

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + PN V + T++  F R     + ++L      R   P
Sbjct: 519 NLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAP 557



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 11/236 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY T++  LCK G +D A+EL  + K     P+V  YN+LI G C       A 
Sbjct: 210 CPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDGMCKEGRIEVAI 264

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EMMD G+  +VV+++ I++ LC +  ++ A  L   M   G      C+ NI  + 
Sbjct: 265 KLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG------CDANIHTFT 318

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G    GKL  A +L + + + G  PNVV YN  IH LC++  +++A  +   M+  
Sbjct: 319 PLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS 378

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           G  PN   ++ L+  F +  +     E    M      P     + +VD+L KN +
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSM 434



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 13/239 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EFG  CKP    YN ++D L  E        L+  MK + + PNV TYN L+   C  + 
Sbjct: 137 EFG--CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDR 194

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A  LF+EM ++G   D VT+  ++  LCK  K+D+A  L      G  +P      +
Sbjct: 195 VDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKP------S 243

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LIDG+CK G+++ A +L   +   G+ PNVV+Y+  I++LC    ++ A  LF 
Sbjct: 244 VPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFA 303

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            M ++G   N   FT L+     + +  + ++L + M +    P     + ++  L  N
Sbjct: 304 QMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSN 362



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 9/199 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNT+T+NT I GLC  G V+ A +L  +M+     PN+ TYN L+      N   EA 
Sbjct: 450 CTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAF 509

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF E+  R LQ ++VT+N ++    +   M EA +L    +  G  PD+      + Y 
Sbjct: 510 GLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDS------ITYN 563

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            +I   CK GK+K A +L + ++      P+++TY   I   CN   +++A   FLD  +
Sbjct: 564 TMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMA-FLDKAI 622

Query: 191 -KGVAPNCVIFTTLMPSFI 208
            +G+ PN   +  L+  F 
Sbjct: 623 NQGICPNFATWNALVRCFF 641



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 7/201 (3%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR     C+PN VTY  ++D LCK    D+A  L  +M  E   PN +T+N+ I G C  
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGN 467

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A  L   M   G   ++ T+N ++D L +  K +EA  L   +    ++P     
Sbjct: 468 GRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQP----- 522

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V Y  ++ G  + G +  A +L       G  P+ +TYN  IHA C   ++  A  L
Sbjct: 523 -NLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQL 581

Query: 185 FLDM-EVKGVAPNCVIFTTLM 204
              +  +K   P+ + +T+L+
Sbjct: 582 VERVSSMKEWHPDIITYTSLI 602



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 41/174 (23%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
             Q    T+ V+++ L +  +MD    +L  M   G+     CE   +   C+I+G  ++
Sbjct: 69  AFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGIN---CCEDLFI---CIINGYKRV 122

Query: 141 GKLKNARE-----------------------------------LSQSLTRAGLMPNVVTY 165
           G  + A +                                   L  ++ + GL+PNV TY
Sbjct: 123 GSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTY 182

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           NI + ALC ++++D AH LF++M  KG  P+ V +TT++ S  +  +     EL
Sbjct: 183 NILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 7/239 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN +++  C+EG VD+A  L   M+   + P++ +YN L+ GFC AN  + A 
Sbjct: 255 CVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAH 314

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            + +E M      DVV++N ++   CK R+  +   L + M   G+RPD      +V + 
Sbjct: 315 LMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPD------MVTFN 368

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID   + G     ++L   +T+  ++P+ + Y   +  LC + ++D AH +F DM   
Sbjct: 369 ILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVEN 428

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN-EISL 249
           GV P+ + +  L+  F + +     + L   M  + + P      +IV  L++  +ISL
Sbjct: 429 GVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISL 487



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+      ++ GLC  G VD A EL + +    +  N + YN+LI GFC     ++A  +
Sbjct: 187 PDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKI 246

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G   D+VT+N++++  C+   +DEA RL++ M + GV PD +      +Y  L
Sbjct: 247 KAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLY------SYNEL 300

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK   +  A  +     +   M +VV+YN  I A C   +  K ++LF +M  KG+
Sbjct: 301 LKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGI 360

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+ V F  L+ +F+R+  T  V +LL  M K  V+P     + +VD L KN
Sbjct: 361 RPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKN 412



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   +NT ++ LC++  ++ A ELF  M  +  +P+VV+Y  +I   C A   +EA  +
Sbjct: 117 PDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKV 176

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  ++D+GL  D      ++  LC   ++D A  L+  +I+GGV+      +N + Y  L
Sbjct: 177 WRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVK------VNSLVYNAL 230

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C++G++  A ++   ++R G +P++VTYNI ++  C +  +D+A  L   ME  GV
Sbjct: 231 IDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGV 290

Query: 194 APNCVIFTTLMPSFIRKNETSK----VIELLRSMDKRNVMPYASILS 236
            P+   +  L+  F + N   +    ++E +++    +V+ Y ++++
Sbjct: 291 EPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVIT 337



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 6/200 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V+YNT+I   CK     K  ELF +M  + I P++VT+N LI  F      +  + L 
Sbjct: 328 DVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLL 387

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM    +  D + +  ++D LCKN K+D A  +   M++ GV PD      +++Y  L+
Sbjct: 388 DEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPD------VISYNALL 441

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +G CK  ++ +A  L   +   GL P+ VTY + +  L   +++  A  ++  M  +G  
Sbjct: 442 NGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFT 501

Query: 195 PNCVIFTTLMPSFIRKNETS 214
            N  +  TL+ +    + T+
Sbjct: 502 LNRHLSETLVNAIQSSDGTT 521



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 65/103 (63%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + Y  ++D LCK G VD A  +F  M +  +NP+V++YN+L++GFC  +   +A +L
Sbjct: 397 PDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHL 456

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           F EM  +GL  D VT+ +I+  L + +K+  A R+ D M++ G
Sbjct: 457 FDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERG 499



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 14/225 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM---KDENINPNVVTYNSLIHGFCYA-NDG 67
           C+  +V YN  I  L +   +  A   + +    +  ++ P   TY+  I   C A N+ 
Sbjct: 41  CRVFSVDYNRFIGVLLRHSRLHLAHHYYRRHVIPRGFSLLP--FTYSRFISALCSAPNNI 98

Query: 68  NEA--EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           N      L ++M   G   D+  FN  ++ LC+  +++ A  L   M   G  PD     
Sbjct: 99  NLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPD----- 153

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V+Y  +ID LC   +   A ++ + L   GL P+       +  LC+  ++D A++L 
Sbjct: 154 -VVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELV 212

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + +   GV  N +++  L+  F R     K +++   M +   +P
Sbjct: 213 VGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVP 257



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + + Y + I  L K G +++A  LF QM + N     V YN  I      +  + A + +
Sbjct: 9   HRLAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYY 68

Query: 75  I-EMMDRGLQSDVVTFNVIMDELCK---NRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              ++ RG      T++  +  LC    N  +     LL  M   G  PD      I A+
Sbjct: 69  RRHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPD------IWAF 122

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
              ++ LC+  +L+ A EL  S+   G  P+VV+Y I I ALCN ++ D+A  ++  +  
Sbjct: 123 NTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLID 182

Query: 191 KGVAPN 196
           KG++P+
Sbjct: 183 KGLSPD 188



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 9/212 (4%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M   +I  + + Y S I     A   N+A YLF +M +   +   V +N  +  L ++ +
Sbjct: 1   MYQSSIGAHRLAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSR 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG---KLKNARELSQSLTRAGL 158
           +  A        +  V P  F  +    Y   I  LC       L     L   +   G 
Sbjct: 61  LHLAHHYY----RRHVIPRGFSLLPF-TYSRFISALCSAPNNINLPLIHSLLLDMDSLGF 115

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +P++  +N  ++ LC   +++ A +LF  M  KG  P+ V +T ++ +        +  +
Sbjct: 116 VPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAK 175

Query: 219 LLRSMDKRNVMP-YASILSIIVDLLVKNEISL 249
           + R +  + + P Y + ++++V L     + L
Sbjct: 176 VWRRLIDKGLSPDYKACVALVVGLCSGGRVDL 207


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  ++DGLCK   V +A++L   M  E   PN + Y++LI GFC     +EA+ +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M +RG   +V T++ ++D L K++++D A ++L  M++    P      N++ Y  +
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAP------NVIIYTEM 747

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK+GK   A  L   +   G  PNVVTY   I       ++DK  +L   M  KG 
Sbjct: 748 IDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGC 807

Query: 194 APNCVIFTTLM 204
           APN V +  L+
Sbjct: 808 APNFVTYRVLI 818



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 10/241 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +ID  CK G + +A++ F +M  +   PNVVTY +LIH +  A   + A  L
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--FCEI------ 125
           F  M+  G   +VVT+  ++D  CK+ ++++A ++   M      PD   + +I      
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIR 632

Query: 126 --NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             NI  YG L+DGLCK  K+K AR+L   ++  G  PN + Y+  I   C   ++D+A  
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +F  M  +G  PN   +++L+    +       +++L  M + +  P   I + ++D L 
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752

Query: 244 K 244
           K
Sbjct: 753 K 753



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 122/250 (48%), Gaps = 26/250 (10%)

Query: 1   MANGNREFGVV----CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK------------- 43
           M++ N  F ++    C PN VTY  +IDG CK G ++KA +++ +M+             
Sbjct: 566 MSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFK 625

Query: 44  --DENI-NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
             D NI +PN+ TY +L+ G C A+   EA  L   M   G + + + ++ ++D  CK  
Sbjct: 626 IDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVG 685

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           K+DEA  +   M + G  P      N+  Y  LID L K  +L  A ++   +      P
Sbjct: 686 KLDEAQMVFTKMSERGYGP------NVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAP 739

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           NV+ Y   I  LC   + D+A+ L   ME KG  PN V +T ++  F +  +  K +EL+
Sbjct: 740 NVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELM 799

Query: 221 RSMDKRNVMP 230
           R M  +   P
Sbjct: 800 RQMGAKGCAP 809



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 117/245 (47%), Gaps = 22/245 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +I    K   +  A ELF  M  E   PNVVTY +LI G C +    +A 
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 72  YLFIEM--------------MDRGLQSD--VVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
            ++  M              +D G   D  + T+  ++D LCK  K+ EA  LLD+M   
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVE 665

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G      CE N + Y  LIDG CK+GKL  A+ +   ++  G  PNV TY+  I  L  D
Sbjct: 666 G------CEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKD 719

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
           +++D A  +   M     APN +I+T ++    +  +T +   L+  M+++   P     
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTY 779

Query: 236 SIIVD 240
           + ++D
Sbjct: 780 TAMID 784



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 22/249 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY+ +I  LC    VD A  LF +MK  ++ P+V TY  LI  FC      +A   
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+  G   +VVT+  ++    K RKM  A  L ++M+  G  P      N+V Y  L
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIP------NVVTYTAL 591

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLM----------------PNVVTYNITIHALCNDEQ 177
           IDG CK G+++ A ++   +     +                PN+ TY   +  LC   +
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHK 651

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           + +A DL   M V+G  PN +++  L+  F +  +  +   +   M +R   P     S 
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711

Query: 238 IVDLLVKNE 246
           ++D L K++
Sbjct: 712 LIDRLFKDK 720



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 110/231 (47%), Gaps = 29/231 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN + Y  +IDGLCK G  D+A  L   M+++  +PNVVTY ++I GF  A   ++  
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCL 796

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-------GGVRP----- 119
            L  +M  +G   + VT+ V+++  C    +D+A +LLD M Q        G R      
Sbjct: 797 ELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF 856

Query: 120 -----------DAFCE---INIV-AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                      D   E   + I+ AY  LID  CK G+L+ A EL + ++          
Sbjct: 857 NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADK 916

Query: 165 --YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
             Y+  I +L    ++DKA +L+ DM  +G  P   IF  L+   IR N T
Sbjct: 917 DLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRT 967



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  ++ G  ++  + + K +   M  E   P+   +NSLIH +C + D + A 
Sbjct: 330 CIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAY 389

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAY 130
            L  +M D G Q   V +N+++  +C N K+  +  +L+L  +  G   DA   +N V  
Sbjct: 390 KLLKKMGDCGCQPGYVVYNILIGGICGNEKL-PSLDVLELAEKAYGEMLDAHVVLNKVNV 448

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L   LC  GK + A  + + +   G +P+  TY+  I  LCN  ++D A  LF +M+ 
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 191 KGVAPNCVIFTTLMPSFIR----KNETSKVIELLRSMDKRNVMPYASIL 235
             V P+   +T L+ SF +    +       E++R     NV+ Y +++
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALI 557



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 9/227 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +I   C+ G  + A E   ++KD    P+ +TYN+L+  F  A+  + A  +  EM D
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G   D  T    +  LCK  +  EA  L++         + F +++ V Y  +I GLC+
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIE--------KEEF-KLDTVIYTQMISGLCE 311

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A +    +  +  +PNVVTY I +       Q+ +   +   M  +G  P+  I
Sbjct: 312 ASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRI 371

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           F +L+ ++ R  + S   +LL+ M      P   + +I++  +  NE
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNE 418



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 107/291 (36%), Gaps = 56/291 (19%)

Query: 13  KPNTVTYNTII--------------------------DG---------LCKEGFVDKAKE 37
           KP+ +TYN ++                          DG         LCK G   + +E
Sbjct: 229 KPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---RWRE 285

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
               ++ E    + V Y  +I G C A+   EA      M       +VVT+ +++    
Sbjct: 286 ALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCL 345

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           + R++    R+L +MI  G  P          +  LI   C+ G    A +L + +   G
Sbjct: 346 RKRQLGRCKRILSMMITEGCYPSR------RIFNSLIHAYCRSGDYSYAYKLLKKMGDCG 399

Query: 158 LMPNVVTYNITIHALCNDEQM---------DKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
             P  V YNI I  +C +E++         +KA+   LD     V  N V  + L     
Sbjct: 400 CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAH---VVLNKVNVSNLARCLC 456

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
              +  K   ++R M  +  +P  S  S ++ LL       N+   F   K
Sbjct: 457 GAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMK 507


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  ++DGLCK   V +A++L   M  E   PN + Y++LI GFC     +EA+ +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M +RG   +V T++ ++D L K++++D A ++L  M++    P      N++ Y  +
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAP------NVIIYTEM 747

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK+GK   A  L   +   G  PNVVTY   I       ++DK  +L   M  KG 
Sbjct: 748 IDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGC 807

Query: 194 APNCVIFTTLM 204
           APN V +  L+
Sbjct: 808 APNFVTYRVLI 818



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 10/241 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +ID  CK G + +A++ F +M  +   PNVVTY +LIH +  A   + A  L
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--FCEI------ 125
           F  M+  G   +VVT+  ++D  CK+ ++++A ++   M      PD   + +I      
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIR 632

Query: 126 --NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             NI  YG L+DGLCK  K+K AR+L   ++  G  PN + Y+  I   C   ++D+A  
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +F  M  +G  PN   +++L+    +       +++L  M + +  P   I + ++D L 
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752

Query: 244 K 244
           K
Sbjct: 753 K 753



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 122/250 (48%), Gaps = 26/250 (10%)

Query: 1   MANGNREFGVV----CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK------------- 43
           M++ N  F ++    C PN VTY  +IDG CK G ++KA +++ +M+             
Sbjct: 566 MSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFK 625

Query: 44  --DENI-NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
             D NI +PN+ TY +L+ G C A+   EA  L   M   G + + + ++ ++D  CK  
Sbjct: 626 IDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVG 685

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           K+DEA  +   M + G  P      N+  Y  LID L K  +L  A ++   +      P
Sbjct: 686 KLDEAQMVFTKMSERGYGP------NVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAP 739

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           NV+ Y   I  LC   + D+A+ L   ME KG  PN V +T ++  F +  +  K +EL+
Sbjct: 740 NVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELM 799

Query: 221 RSMDKRNVMP 230
           R M  +   P
Sbjct: 800 RQMGAKGCAP 809



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 117/245 (47%), Gaps = 22/245 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +I    K   +  A ELF  M  E   PNVVTY +LI G C +    +A 
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 72  YLFIEM--------------MDRGLQSD--VVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
            ++  M              +D G   D  + T+  ++D LCK  K+ EA  LLD+M   
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVE 665

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G      CE N + Y  LIDG CK+GKL  A+ +   ++  G  PNV TY+  I  L  D
Sbjct: 666 G------CEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKD 719

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
           +++D A  +   M     APN +I+T ++    +  +T +   L+  M+++   P     
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTY 779

Query: 236 SIIVD 240
           + ++D
Sbjct: 780 TAMID 784



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 22/249 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY+ +I  LC    VD A  LF +MK  ++ P+V TY  LI  FC      +A   
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+  G   +VVT+  ++    K RKM  A  L ++M+  G  P      N+V Y  L
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIP------NVVTYTAL 591

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLM----------------PNVVTYNITIHALCNDEQ 177
           IDG CK G+++ A ++   +     +                PN+ TY   +  LC   +
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHK 651

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           + +A DL   M V+G  PN +++  L+  F +  +  +   +   M +R   P     S 
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711

Query: 238 IVDLLVKNE 246
           ++D L K++
Sbjct: 712 LIDRLFKDK 720



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 29/237 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN + Y  +IDGLCK G  D+A  L   M+++  +PNVVTY ++I GF  A   ++  
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCL 796

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-------GGVRP----- 119
            L  +M  +G   + VT+ V+++  C    +D+A +LLD M Q        G R      
Sbjct: 797 ELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF 856

Query: 120 -----------DAFCE---INIV-AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                      D   E   + I+ AY  LID  CK G+L+ A EL + ++          
Sbjct: 857 NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADK 916

Query: 165 --YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
             Y+  I +L    ++DKA +L+ DM  +G  P   IF  L+   IR N   + ++L
Sbjct: 917 DLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL 973



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  ++ G  ++  + + K +   M  E   P+   +NSLIH +C + D + A 
Sbjct: 330 CIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAY 389

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAY 130
            L  +M D G Q   V +N+++  +C N K+  +  +L+L  +  G   DA   +N V  
Sbjct: 390 KLLKKMGDCGCQPGYVVYNILIGGICGNEKL-PSLDVLELAEKAYGEMLDAHVVLNKVNV 448

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L   LC  GK + A  + + +   G +P+  TY+  I  LCN  ++D A  LF +M+ 
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 191 KGVAPNCVIFTTLMPSFIR----KNETSKVIELLRSMDKRNVMPYASIL 235
             V P+   +T L+ SF +    +       E++R     NV+ Y +++
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALI 557



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 9/227 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +I   C+ G  + A E   ++KD    P+ +TYN+L+  F  A+  + A  +  EM D
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G   D  T    +  LCK  +  EA  L++         + F +++ V Y  +I GLC+
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIE--------KEEF-KLDTVIYTQMISGLCE 311

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A +    +  +  +PNVVTY I +       Q+ +   +   M  +G  P+  I
Sbjct: 312 ASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRI 371

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           F +L+ ++ R  + S   +LL+ M      P   + +I++  +  NE
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNE 418



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 107/291 (36%), Gaps = 56/291 (19%)

Query: 13  KPNTVTYNTII--------------------------DG---------LCKEGFVDKAKE 37
           KP+ +TYN ++                          DG         LCK G   + +E
Sbjct: 229 KPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---RWRE 285

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
               ++ E    + V Y  +I G C A+   EA      M       +VVT+ +++    
Sbjct: 286 ALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCL 345

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           + R++    R+L +MI  G  P          +  LI   C+ G    A +L + +   G
Sbjct: 346 RKRQLGRCKRILSMMITEGCYPSR------RIFNSLIHAYCRSGDYSYAYKLLKKMGDCG 399

Query: 158 LMPNVVTYNITIHALCNDEQM---------DKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
             P  V YNI I  +C +E++         +KA+   LD     V  N V  + L     
Sbjct: 400 CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAH---VVLNKVNVSNLARCLC 456

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
              +  K   ++R M  +  +P  S  S ++ LL       N+   F   K
Sbjct: 457 GAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMK 507



 Score = 40.0 bits (92), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD--ENINPNVVTYNSLIHGFCYANDGN 68
           V  P    Y  +ID  CK G ++ A EL  +M         +   Y+SLI     A+  +
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVD 933

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           +A  L+ +M+ RG   ++  F  ++  L +  + +EA +L D + Q
Sbjct: 934 KAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQ 979


>gi|357119779|ref|XP_003561611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Brachypodium distachyon]
          Length = 547

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY T+IDGLCK G +  A++++ +M  + + PN   Y S +  +C A D + A  ++
Sbjct: 273 DAVTYTTVIDGLCKVGNIVDARKMWDEMVHKGMEPNEYAYCSFLGYYCKAGDFDMAYKVY 332

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +G +   V+ N+I+   C + ++DEA  + + M+  G+  D F       Y  LI
Sbjct: 333 GEMLGKGFKESTVSCNIILAGFCVHMRVDEAISVFEGMVTEGIEHDVF------TYNTLI 386

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLCK+G+L  A  + Q L  +GL P V T+   I  +C + Q+D A +LF  M+ KG  
Sbjct: 387 QGLCKVGRLAEAIRMYQRLLSSGLEPTVSTFTPLIDTMCEEGQVDHAVELFRLMQAKGFE 446

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           P      +++  F +       +  L  M K N+ P     + +++LL  +E
Sbjct: 447 PLVRSNDSVINGFCKARRADDAMAWLAGMLKSNLKPQKQTFNSLLELLSTSE 498



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +TV+ N I+ G C    VD+A  +F  M  E I  +V TYN+LI G C      EA  
Sbjct: 341 KESTVSCNIILAGFCVHMRVDEAISVFEGMVTEGIEHDVFTYNTLIQGLCKVGRLAEAIR 400

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  ++  GL+  V TF  ++D +C+  ++D A  L  LM   G  P       + +   
Sbjct: 401 MYQRLLSSGLEPTVSTFTPLIDTMCEEGQVDHAVELFRLMQAKGFEP------LVRSNDS 454

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           +I+G CK  +  +A      + ++ L P   T+N  +  L   E++D A
Sbjct: 455 VINGFCKARRADDAMAWLAGMLKSNLKPQKQTFNSLLELLSTSERVDDA 503



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 29/246 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++     ++      G   K  +    M      P+ V Y  +IHG      G EA  +
Sbjct: 202 PSSAAAADLVKAFAASGNFPKVSDTLHLMISAGYPPDTVVYQCIIHGLFAHKMGGEALRV 261

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
           F E+  RG   D VT+  ++D LCK   + +A ++ D M+  G+ P+ +   + + Y C 
Sbjct: 262 FNEIKLRGYDIDAVTYTTVIDGLCKVGNIVDARKMWDEMVHKGMEPNEYAYCSFLGYYCK 321

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       ++ G C   ++  A  + + +   G+  +V T
Sbjct: 322 AGDFDMAYKVYGEMLGKGFKESTVSCNIILAGFCVHMRVDEAISVFEGMVTEGIEHDVFT 381

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I  LC   ++ +A  ++  +   G+ P    FT L+ +   + +    +EL R M 
Sbjct: 382 YNTLIQGLCKVGRLAEAIRMYQRLLSSGLEPTVSTFTPLIDTMCEEGQVDHAVELFRLMQ 441

Query: 225 KRNVMP 230
            +   P
Sbjct: 442 AKGFEP 447



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 8/127 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P   T+  +ID +C+EG VD A ELF  M+ +   P V + +S+I+GFC A   ++A  
Sbjct: 411 EPTVSTFTPLIDTMCEEGQVDHAVELFRLMQAKGFEPLVRSNDSVINGFCKARRADDAMA 470

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYG 131
               M+   L+    TFN +++ L  + ++D+A  +L+ M++ G   D+  C I      
Sbjct: 471 WLAGMLKSNLKPQKQTFNSLLELLSTSERVDDALLILNTMLKSGFGLDSLPCTI------ 524

Query: 132 CLIDGLC 138
            L+D LC
Sbjct: 525 -LVDKLC 530


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 6/198 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P T T+N +I+G C+ G ++ A +LF +M++  I PNV+T N+L+ G C  N  + A 
Sbjct: 259 CAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAV 318

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F  M  +GL+ + VT+ V ++  C    M++A   LD M + G  PDA      V Y 
Sbjct: 319 EFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDA------VVYY 372

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GL + G+L +A  +   L  AG   + V YN+ I   C   ++D+A +   +ME+ 
Sbjct: 373 TLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELA 432

Query: 192 GVAPNCVIFTTLMPSFIR 209
           GV P+ V + TL+  F +
Sbjct: 433 GVKPDSVTYNTLISYFSK 450



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 102/215 (47%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T+    +I  LC+ G  + A  +   +   N   +    N+L+ G   A +  +   L
Sbjct: 115 PDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLL 174

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M D  +Q  V+TF ++++ LCK R++D+A  + + M         F   + + Y  L
Sbjct: 175 MRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTL 234

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK+G+ + A  L   +      P   T+N  I+  C   +++ AH LF +ME   +
Sbjct: 235 IDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQI 294

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            PN +   TL+    + N  S  +E  R M ++ +
Sbjct: 295 EPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGL 329



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 12/226 (5%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++ GL K     K   L  +MKD NI P V+T+  LI+  C     ++A  +F +M  
Sbjct: 156 NALLTGLGKAREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKG 215

Query: 80  RGLQS------DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              ++      D + +N ++D LCK  + +EA     L + G +R D  C      + CL
Sbjct: 216 EKEETKVFVAPDTIMYNTLIDGLCKVGRQEEA-----LCLMGKMRSDQ-CAPTTATFNCL 269

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G C+ G+++ A +L   +  A + PNV+T N  +  +C   ++  A + F  M+ KG+
Sbjct: 270 INGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGL 329

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             N V +T  + +F   N  +K +E L  M K    P A +   ++
Sbjct: 330 KGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLI 375



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 9/234 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y T+I GL + G +D A  +  ++K+     + V YN LI  FC  N  + A+
Sbjct: 364 CFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQ 423

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIVAY 130
               EM   G++ D VT+N ++    K      A + +  M  + G+ P  F       Y
Sbjct: 424 EWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVF------TY 477

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAG--LMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           G LI   C    +  A ++ + +      + PN V YNI I +LC   Q++ A  L  DM
Sbjct: 478 GALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDM 537

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           + +GV PN   + ++  +   KN   K  +L+  M ++   P    + I+ + L
Sbjct: 538 KFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWL 591



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 9/203 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V YN +I   CK+  +D+A+E   +M+   + P+ VTYN+LI  F    +   A     +
Sbjct: 404 VCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKK 463

Query: 77  MMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLM--IQGGVRPDAFCEINIVAYGCL 133
           M +  GL   V T+  ++   C N  +DEA ++   M  +   V P      N V Y  L
Sbjct: 464 MTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPP------NTVIYNIL 517

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK  ++  A  L   +   G+MPN  TYN    AL +   +DKA  L   M  +  
Sbjct: 518 IDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQAC 577

Query: 194 APNCVIFTTLMPSFIRKNETSKV 216
            P+ +    L        E +K+
Sbjct: 578 NPDYITMEILTEWLSAVGEITKL 600



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 19/249 (7%)

Query: 13  KPNTVTYNTIIDGLCK-EGFVDKAKE-----LFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +PN  T   + + L K +G   + KE     L  +    NI P+ +    LI   C + +
Sbjct: 73  RPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIALTQLISKLCRSGN 132

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            N A  +   +M      D    N ++  L K R+  +   L+  M    ++P       
Sbjct: 133 TNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKDMNIQP------T 186

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSL------TRAGLMPNVVTYNITIHALCNDEQMDK 180
           ++ +G LI+ LCK  ++ +A E+ + +      T+  + P+ + YN  I  LC   + ++
Sbjct: 187 VITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEE 246

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  L   M     AP    F  L+  + R  E     +L   M+   + P    L+ +VD
Sbjct: 247 ALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVD 306

Query: 241 LLVK-NEIS 248
            + K N IS
Sbjct: 307 GMCKHNRIS 315


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 107/191 (56%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+VT+ T+IDG CK G+VD A E++ QM  +++ P++VTYN+LI+G C   D  +A  L
Sbjct: 245 PNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GL+ D +T+  ++D  CK   +D A     +MIQ  +R D       VAY  L
Sbjct: 305 IDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDD------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 419 VPSVVTYNVLM 429



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M 
Sbjct: 145 FNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMH 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+  DV T++V+++ LCK  KMD+A +L D M++ G+ P      N V +  LIDG C
Sbjct: 205 ASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVP------NSVTFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G +  A E+ + +    L+P++VTYN  I+ LC    + +AHDL  +M + G+ P+ +
Sbjct: 259 KNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKI 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALIS 360



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I+GLCKE  +D A +LF +M ++ + PN VT+ +LI G C     + A  +
Sbjct: 210 PDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEI 269

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+ + L  D+VT+N ++  LCK   + +A  L+D M   G++PD       + Y  L
Sbjct: 270 YKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDK------ITYTTL 323

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G+
Sbjct: 324 IDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 384 KPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    ++P+V TY+ LI+G C  +  ++A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANK 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+++GL  + VTF  ++D  CKN  +D A  +   M+   + PD      +V Y  
Sbjct: 234 LFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPD------LVTYNA 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKK 400



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK   +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A+ LF +M  KG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 243 LVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLP 280



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 6/124 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+IDG CKEG +D A E    M  ENI  + V Y +LI G C      +AE 
Sbjct: 314 KPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEK 373

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  GL+ D  T+ +I++E CK   + + ++LL  M + G  P      ++V Y  
Sbjct: 374 MLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP------SVVTYNV 427

Query: 133 LIDG 136
           L++G
Sbjct: 428 LMNG 431



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C +  +  A  +F  +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWG 172

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCK 224


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 130/268 (48%), Gaps = 25/268 (9%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND--- 66
           V C PN VTY  ++    K   + +A ++F +M D    PN VTY++LI G C A +   
Sbjct: 516 VGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQK 575

Query: 67  ------------GNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
                       GN     + E  D   +  +VVT+  ++D LCK +K+ +A  LLD M+
Sbjct: 576 ACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAML 635

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             G      CE N + Y  LIDG CKIGK+ NA+E+   +T+ G +P+V TY   I  + 
Sbjct: 636 AAG------CEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMF 689

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            D ++D A  +  +M      PN V +T ++    +  E  K + LL  M+++   P   
Sbjct: 690 KDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVV 749

Query: 234 ILSIIVDLLVKN---EISLNSIPQFNRQ 258
             + ++D L K    + SL    Q N +
Sbjct: 750 TYTALIDGLGKTGKADASLKLFKQMNSK 777



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 10/241 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +ID  CK G +++A+  F +M+    +PNVVTY +L+H +  +    +A  +
Sbjct: 485 PDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDI 544

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI--QGGVRPDAF------CEI 125
           F  M+D     + VT++ ++D LCK  ++ +A  + + +I   G V  D +      C I
Sbjct: 545 FHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTI 604

Query: 126 --NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N+V YG LIDGLCK  K+ +A EL  ++  AG  PN + Y+  I   C   ++D A +
Sbjct: 605 APNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQE 664

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +FL M   G  P+   +T+L+    +       +++L  M   +  P     + ++D L 
Sbjct: 665 VFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLS 724

Query: 244 K 244
           K
Sbjct: 725 K 725



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 22/248 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY  +I  LC+   V+K+  LF +MK   +NP+V TY  LI  FC A    +A   
Sbjct: 450 PDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSW 509

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G   +VVT+  ++    K++++ +A  +   M+      DA C  N V Y  L
Sbjct: 510 FDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMV------DAACYPNAVTYSAL 563

Query: 134 IDGLCKIGKLKNARELSQSLTRAG----------------LMPNVVTYNITIHALCNDEQ 177
           IDGLCK G+++ A E+ + L                    + PNVVTY   I  LC  ++
Sbjct: 564 IDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQK 623

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +  AH+L   M   G  PN +++  L+  F +  +     E+   M K   +P     + 
Sbjct: 624 VSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTS 683

Query: 238 IVDLLVKN 245
           ++D + K+
Sbjct: 684 LIDRMFKD 691



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 22/242 (9%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN----------------IN 48
           +R     C PN VTY+ +IDGLCK G + KA E++ ++   +                I 
Sbjct: 546 HRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIA 605

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           PNVVTY +LI G C A   ++A  L   M+  G + + + ++ ++D  CK  K+D A  +
Sbjct: 606 PNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEV 665

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
              M + G  P      ++  Y  LID + K G+L  A ++   +      PNVVTY   
Sbjct: 666 FLRMTKCGYLP------SVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAM 719

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I  L    +++KA +L   ME KG +PN V +T L+    +  +    ++L + M+ +  
Sbjct: 720 IDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGC 779

Query: 229 MP 230
            P
Sbjct: 780 AP 781



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 115/238 (48%), Gaps = 30/238 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGL K G ++KA  L   M+++  +PNVVTY +LI G       + + 
Sbjct: 709 CNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASL 768

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM--------IQG------GV 117
            LF +M  +G   + VT+ V+++  C    +DEA  LLD M        +QG      G 
Sbjct: 769 KLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGF 828

Query: 118 RPDAFCEINIV-------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                  + ++              YG LID   K G+L+ A EL + L       N+ +
Sbjct: 829 SKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTS 888

Query: 165 ---YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
              Y   I ALC   Q+++A  L+ +M  KG+ P+ ++F +L+   I  N+  + ++L
Sbjct: 889 TGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T++ G  K+      K +   M  E  NPN   +NSL+HG+C A D   A 
Sbjct: 302 CIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAY 361

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---AFCEINIV 128
            LF  M   G     V +N+ +  +C   ++  A  LLDL+ +  V  +   A C +N V
Sbjct: 362 KLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNA-ELLDLVEK--VYEEMLAASCVLNKV 418

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
                   LC +GK + A ++ + + R G +P+  TY   I  LC  ++++K+  LF +M
Sbjct: 419 NTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEM 478

Query: 189 EVKGVAPNCVIFTTLMPSFIRKN---ETSKVIELLRSMD-KRNVMPYASIL 235
           +  GV P+   +T L+ SF +     +     + +RS+    NV+ Y ++L
Sbjct: 479 KRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALL 529



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 43/247 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK---------------------------- 43
           C+PN + Y+ +IDG CK G +D A+E+FL+M                             
Sbjct: 639 CEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM 698

Query: 44  -------DENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                  +++ NPNVVTY ++I G     +  +A  L   M ++G   +VVT+  ++D L
Sbjct: 699 KVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGL 758

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            K  K D + +L   M   G  P      N V Y  LI+  C  G L  A  L   +   
Sbjct: 759 GKTGKADASLKLFKQMNSKGCAP------NYVTYRVLINHCCAAGLLDEAHLLLDEMKHT 812

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
               ++  Y+  +      ++   +  L  +ME     P   ++  L+ SF +       
Sbjct: 813 HWPKHLQGYHCAVQGF--SKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETA 870

Query: 217 IELLRSM 223
           +EL + +
Sbjct: 871 LELHKEL 877



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 85/232 (36%), Gaps = 27/232 (11%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++   C+ G  D+A E   ++KD    P+ VTYN+L+     A        +  EM  
Sbjct: 173 NVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSA 232

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLD------------LMIQGGVRPDAF----- 122
            G   D  T       LCK  +  +A  +L+             MI G +    F     
Sbjct: 233 SGFCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMS 292

Query: 123 ---------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
                    C  N+V Y  L+ G  K  +    + +   +   G  PN   +N  +H  C
Sbjct: 293 FLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYC 352

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N      A+ LF  M   G  P  V +   + S   + E     ELL  ++K
Sbjct: 353 NAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNA-ELLDLVEK 403


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+TV YN +I  L K+G VD+A EL   M  + I P+  TYN +I          E  
Sbjct: 366 CMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGR-YEKA 424

Query: 72  YLFIEMMDRGLQS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           Y F  MM R   S DVVT+N +++ L K R+ DEA  L D M      PD      +  +
Sbjct: 425 YSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPD------LTTF 478

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           G LID L K G++++A E S  L + G  PN   YN  I   C   Q+DK ++LF DM  
Sbjct: 479 GTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIE 538

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
               P+ + +T L+  F R+  TS  +ELL+ M +    P  +  ++++
Sbjct: 539 CSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLI 587



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 129/264 (48%), Gaps = 31/264 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEA 70
           C P+ V YNT+I G CK G  D+A ++F ++K E +  PN V++++L+   C  +   +A
Sbjct: 121 CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDA 180

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-------- 122
             +F EM+  GL++DV   N ++   C+   + +A RLL  M       DAF        
Sbjct: 181 LAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNA 240

Query: 123 ---------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
                                C ++ V Y  +I G  + G+L  A +L +S      +P+
Sbjct: 241 HCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPD 300

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V TYN+ I ALC  +Q+++A  LF + E  GV  +   ++ LM +F +    +K +E+  
Sbjct: 301 VFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFY 359

Query: 222 SMDKRNVMPYASILSIIVDLLVKN 245
           +M K   MP   + ++++  L K 
Sbjct: 360 NMQKAGCMPDTVVYNVLISCLGKQ 383



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 115/246 (46%), Gaps = 7/246 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V YN II G  + G + +A +LF     +   P+V TYN LI   C +    EA 
Sbjct: 262 CALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEAL 320

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF E    G+  DV T++ +MD   K  +  +A  +   M + G  PD       V Y 
Sbjct: 321 TLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPD------TVVYN 374

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  L K GK+  A EL + + R G+MP+  TYNI I  L +  + +KA+  F  M+ +
Sbjct: 375 VLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRR 434

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
             +P+ V + TL+    +   T +  +L   M     MP  +    ++D L K     ++
Sbjct: 435 KHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDA 494

Query: 252 IPQFNR 257
           + Q  R
Sbjct: 495 LEQSAR 500



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN +ID L   G  +KA   F  MK    +P+VVTYN+L++G       +EA  L
Sbjct: 403 PDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDL 462

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM       D+ TF  ++D L K  +M++A      +++ G  P+++       Y  L
Sbjct: 463 FDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSY------IYNAL 516

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G++    EL Q +      P+ +TY I +           A +L  +M  +G 
Sbjct: 517 ISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGH 576

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P    +  L+ S     +      L + M  +   P     S + +L   N+
Sbjct: 577 TPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPNLSTPNK 629



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 9/236 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G   K +    NT+I   C+ G + +A+ L   M       +  TY  L++  C A   
Sbjct: 188 LGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQM 247

Query: 68  NE-AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
           +E A ++ +   D G     V +N I+    +  ++ EAT+L +  +     PD F    
Sbjct: 248 HEVASFMELARHD-GCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVF---- 302

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y  LI  LCK  +L+ A  L Q   + G++ +V TY+  + A     +  KA ++F 
Sbjct: 303 --TYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFY 359

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +M+  G  P+ V++  L+    ++ +  + +ELL  M+++ +MP     +I++D+L
Sbjct: 360 NMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVL 415



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T   ++  +CK G  +   EL  +++ + +  + VT    I  F  A D + A  + ++ 
Sbjct: 20  TATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGDLDAAMGM-LDD 78

Query: 78  MDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           M RG   Q D V F   M  LC+ R++++A  L D M     R    C  ++VAY  LI 
Sbjct: 79  MRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDM-----RETCDCAPDVVAYNTLIA 133

Query: 136 GLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           G CK G    A ++ + L + G   PN V+++  +  LC   +   A  +F +M   G+ 
Sbjct: 134 GYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLK 193

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +  +  TL+    R     +   LL  M        A    I+V+
Sbjct: 194 ADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVN 239



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+++TY  ++ G  + G    A EL  +M  E   P + TYN LI     A    +A 
Sbjct: 541 CFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAY 600

Query: 72  YLFIEMMDRGLQSDVVTFNVI 92
            LF EM+ +G   D+ T++ +
Sbjct: 601 TLFKEMIAKGFNPDMQTYSAL 621


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 125/222 (56%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+    D NE   L   M 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  K+D+A  L D M+  G+ P      N V++  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVP------NSVSFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC +  + +A DL  +M +KG+ P+ +
Sbjct: 253 KDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+V++ T+IDG CK+G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 INEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 VPSVV 417



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  +  GV  +P+  TY+ +I+GLCKE  +D A ELF +M D  + PN V++ +LI G
Sbjct: 193 LKNAMQASGV--QPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDG 250

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     + A  ++ +M+ + L  D++T+N ++  LCKN  + +A  L++ M   G++PD
Sbjct: 251 HCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPD 310

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  + Y  LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   
Sbjct: 311 K------ITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  +  +M   G+ P    +T ++  F +K +     +L++ M +   +P
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP 414



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +++   L   M+   + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D GL  + V+F  ++D  CK+ ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 110/233 (47%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   K+        T   ++              
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M   CK  ++  A  + D + + G+RP      ++V++  
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K+G L     L  ++  +G+ P+V TY++ I+ LC + ++D A++LF +M   G
Sbjct: 177 LMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + PN V FTTL+    +       +E+ + M  +++ P     + ++  L KN
Sbjct: 237 LVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKN 289



 Score = 44.3 bits (103), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P + TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGYVPSVVT 418


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 126/294 (42%), Gaps = 59/294 (20%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  RE G  C PN VTY  +I    K   V  A ELF  M  E   PN+VTY++LI G C
Sbjct: 542 NEMREVG--CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599

Query: 63  YANDGNEAEYLFIEMM----------------DRGLQSDVVTFNVIMDELCKNRKMDEAT 106
            A    +A  +F  M                 D   + +VVT+  ++D  CK+ +++EA 
Sbjct: 600 KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEAR 659

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL-------- 158
           +LLD M   G      CE N + Y  LIDGLCK+GKL  A+E+   ++  G         
Sbjct: 660 KLLDAMSMEG------CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713

Query: 159 ---------------------------MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
                                       PNVV Y   I  LC   + D+A+ L   ME K
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  PN V +T ++  F    +    +ELL  M  + V P      +++D   KN
Sbjct: 774 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKN 827



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 125/235 (53%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN + Y+ +IDGLCK G +D+A+E+  +M +      + TY+SLI  +      + A 
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M++     +VV +  ++D LCK  K DEA +L+ +M + G +P      N+V Y 
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQP------NVVTYT 783

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG   IGK++   EL + +   G+ PN VTY + I   C +  +D AH+L  +M+  
Sbjct: 784 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 843

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               +   +  ++  F    E  + + LL  + + +  P+ S+  +++D L+K +
Sbjct: 844 HWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 124/240 (51%), Gaps = 10/240 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TY  ++D  CK G +++A++ F +M++    PNVVTY +LIH +  A   + A  LF
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---FCEI------ 125
             M+  G   ++VT++ ++D  CK  ++++A ++ + M      PD    F +       
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 636

Query: 126 -NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V YG L+DG CK  +++ AR+L  +++  G  PN + Y+  I  LC   ++D+A ++
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +M   G       +++L+  + +        ++L  M + +  P   I + ++D L K
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 109/238 (45%), Gaps = 29/238 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  +IDGLCK G  D+A +L   M+++   PNVVTY ++I GF          
Sbjct: 740 CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCL 799

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-------GGVRP----- 119
            L   M  +G+  + VT+ V++D  CKN  +D A  LL+ M Q        G R      
Sbjct: 800 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF 859

Query: 120 -DAFCEI--------------NIVAYGCLIDGLCKIGKLKNARELSQSLT--RAGLMPNV 162
              F E                +  Y  LID L K  +L+ A  L + +    A L+   
Sbjct: 860 NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYS 919

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            TYN  I +LC   +++ A  LF +M  KGV P    F +L+    R ++ S+ + LL
Sbjct: 920 STYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 12/216 (5%)

Query: 14  PNTVTYNTIIDGLCKEG------FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           P  V YN +I  +C +        +D A++ + +M    +  N +  +S     C A   
Sbjct: 405 PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY 464

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            +A  +  EM+ +G   D  T++ +++ LC   KM+ A  L + M +GG+  D +     
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVY----- 519

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  ++D  CK G ++ AR+    +   G  PNVVTY   IHA    +++  A++LF  
Sbjct: 520 -TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           M  +G  PN V ++ L+    +  +  K  ++   M
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 117/271 (43%), Gaps = 35/271 (12%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR     C PN VTY+T++ G   +  + + K +   M  E   P+   +NSL+H +C +
Sbjct: 326 NRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTS 385

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK------MDEATRLLDLMIQGGV- 117
            D + A  L  +M+  G     V +N+++  +C ++       +D A +    M+  GV 
Sbjct: 386 GDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVV 445

Query: 118 ------------------RPDAFCEI----------NIVAYGCLIDGLCKIGKLKNAREL 149
                                AF  I          +   Y  +++ LC   K++ A  L
Sbjct: 446 LNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLL 505

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            + + R GL+ +V TY I + + C    +++A   F +M   G  PN V +T L+ ++++
Sbjct: 506 FEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             + S   EL  +M     +P     S ++D
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALID 596



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 9/231 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++   C+ G    A E   ++KD    P+  TYN LI  F  A+  + A  +  EM  
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
             L+ D  T       LCK  K  EA   L L+      PD       V Y  LI GLC+
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDT------VFYTKLISGLCE 314

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A +    +     +PNVVTY+  +    N +Q+ +   +   M ++G  P+  I
Sbjct: 315 ASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI 374

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
           F +L+ ++    + S   +LL+ M K   MP   + +I++  +  ++ SLN
Sbjct: 375 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMK--DENINPNVVTYNSLIHGFCYANDGNEAE 71
           P    Y  +ID L K   ++ A  L  ++      +     TYNSLI   C AN    A 
Sbjct: 880 PFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAF 939

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
            LF EM  +G+  ++ +F  ++  L +N K+ EA  LLD +
Sbjct: 940 QLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFI 980


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  ++DGLCK   V +A++L   M  E   PN + Y++LI GFC     +EA+ +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M +RG   +V T++ ++D L K++++D A ++L  M++    P      N++ Y  +
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAP------NVIIYTEM 747

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK+GK   A  L   +   G  PNVVTY   I       ++DK  +L   M  KG 
Sbjct: 748 IDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGC 807

Query: 194 APNCVIFTTLM 204
           APN V +  L+
Sbjct: 808 APNFVTYRVLI 818



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 10/241 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +ID  CK G + +A++ F +M  +   PNVVTY +LIH +  A   + A  L
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--FCEI------ 125
           F  M+  G   +VVT+  ++D  CK+ ++++A ++   M      PD   + +I      
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIR 632

Query: 126 --NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             NI  YG L+DGLCK  K+K AR+L   ++  G  PN + Y+  I   C   ++D+A  
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +F  M  +G  PN   +++L+    +       +++L  M + +  P   I + ++D L 
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752

Query: 244 K 244
           K
Sbjct: 753 K 753



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 122/250 (48%), Gaps = 26/250 (10%)

Query: 1   MANGNREFGVV----CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK------------- 43
           M++ N  F ++    C PN VTY  +IDG CK G ++KA +++ +M+             
Sbjct: 566 MSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFK 625

Query: 44  --DENI-NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
             D NI +PN+ TY +L+ G C A+   EA  L   M   G + + + ++ ++D  CK  
Sbjct: 626 IDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVG 685

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           K+DEA  +   M + G  P      N+  Y  LID L K  +L  A ++   +      P
Sbjct: 686 KLDEAQMVFTKMSERGYGP------NVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAP 739

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           NV+ Y   I  LC   + D+A+ L   ME KG  PN V +T ++  F +  +  K +EL+
Sbjct: 740 NVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELM 799

Query: 221 RSMDKRNVMP 230
           R M  +   P
Sbjct: 800 RQMGAKGCAP 809



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 117/245 (47%), Gaps = 22/245 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +I    K   +  A ELF  M  E   PNVVTY +LI G C +    +A 
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKAC 605

Query: 72  YLFIEM--------------MDRGLQSD--VVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
            ++  M              +D G   D  + T+  ++D LCK  K+ EA  LLD+M   
Sbjct: 606 QIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVE 665

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G      CE N + Y  LIDG CK+GKL  A+ +   ++  G  PNV TY+  I  L  D
Sbjct: 666 G------CEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKD 719

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
           +++D A  +   M     APN +I+T ++    +  +T +   L+  M+++   P     
Sbjct: 720 KRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTY 779

Query: 236 SIIVD 240
           + ++D
Sbjct: 780 TAMID 784



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 22/249 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY+ +I  LC    VD A  LF +MK  ++ P+V TY  LI  FC      +A   
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+  G   +VVT+  ++    K RKM  A  L ++M+  G  P      N+V Y  L
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIP------NVVTYTAL 591

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLM----------------PNVVTYNITIHALCNDEQ 177
           IDG CK G+++ A ++   +     +                PN+ TY   +  LC   +
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHK 651

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           + +A DL   M V+G  PN +++  L+  F +  +  +   +   M +R   P     S 
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711

Query: 238 IVDLLVKNE 246
           ++D L K++
Sbjct: 712 LIDRLFKDK 720



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 29/237 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN + Y  +IDGLCK G  D+A  L   M+++  +PNVVTY ++I GF  A   ++  
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCL 796

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-------GGVRP----- 119
            L  +M  +G   + VT+ V+++  C    +D+A +LLD M Q        G R      
Sbjct: 797 ELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF 856

Query: 120 -----------DAFCE---INIV-AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                      D   E   + I+ AY  LID  CK G+L+ A EL + ++          
Sbjct: 857 NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADK 916

Query: 165 --YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
             Y+  I +L    ++DKA +L+ DM  +G  P   IF  L+   IR N   + ++L
Sbjct: 917 DLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL 973



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  ++ G  ++  + + K +   M  E   P+   +NSLIH +C + D + A 
Sbjct: 330 CIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAY 389

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAY 130
            L  +M D G Q   V +N+++  +C N K+  +  +L+L  +  G   DA   +N V  
Sbjct: 390 KLLKKMGDCGCQPGYVVYNILIGGICGNEKL-PSLDVLELAEKAYGEMLDAHVVLNKVNV 448

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L   LC  GK + A  + + +   G +P+  TY+  I  LCN  ++D A  LF +M+ 
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 191 KGVAPNCVIFTTLMPSFIR----KNETSKVIELLRSMDKRNVMPYASIL 235
             V P+   +T L+ SF +    +       E++R     NV+ Y +++
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALI 557



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 9/227 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N +I   C+ G  + A E   ++KD    P+ +TYN+L+  F  A+  + A  +  EM D
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G   D  T    +  LCK  +  EA  L++         + F +++ V Y  +I GLC+
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIE--------KEEF-KLDTVIYTQMISGLCE 311

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A +    +  +  +PNVVTY I +       Q+ +   +   M  +G  P+  I
Sbjct: 312 ASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRI 371

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           F +L+ ++ R  + S   +LL+ M      P   + +I++  +  NE
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNE 418



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 107/291 (36%), Gaps = 56/291 (19%)

Query: 13  KPNTVTYNTII--------------------------DG---------LCKEGFVDKAKE 37
           KP+ +TYN ++                          DG         LCK G   + +E
Sbjct: 229 KPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---RWRE 285

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
               ++ E    + V Y  +I G C A+   EA      M       +VVT+ +++    
Sbjct: 286 ALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCL 345

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           + R++    R+L +MI  G  P          +  LI   C+ G    A +L + +   G
Sbjct: 346 RKRQLGRCKRILSMMITEGCYPSR------RIFNSLIHAYCRSGDYSYAYKLLKKMGDCG 399

Query: 158 LMPNVVTYNITIHALCNDEQM---------DKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
             P  V YNI I  +C +E++         +KA+   LD     V  N V  + L     
Sbjct: 400 CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAH---VVLNKVNVSNLARCLC 456

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
              +  K   ++R M  +  +P  S  S ++ LL       N+   F   K
Sbjct: 457 GAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMK 507



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD--ENINPNVVTYNSLIHGFCYANDGN 68
           V  P    Y  +ID  CK G ++ A EL  +M         +   Y+SLI     A+  +
Sbjct: 874 VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVD 933

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           +A  L+ +M+ RG   ++  F  ++  L +  + +EA +L D + Q
Sbjct: 934 KAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQ 979


>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic [Vitis vinifera]
 gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
          Length = 567

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G    P+  +   +++ LCK G V  A +L  +M++     N VTYNSL+ G C   + +
Sbjct: 125 GSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLS 184

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           ++  +  + M +GL  +V T++ +++   K R  DEA RLLD ++  G +P      N+V
Sbjct: 185 QSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKP------NLV 238

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  L+ GLCK G+ + A +  + L   G  PNVV+YNI + +LC + + +KA +L  +M
Sbjct: 239 SYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEM 298

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +    +P+ V F  L+ S     +T + +E+L  M +      A+  + I+  L K
Sbjct: 299 DGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCK 354



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 65/298 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V+YN ++ GLCKEG  ++A + F  +  +  +PNVV+YN L+   CY     +A+ 
Sbjct: 234 KPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKE 293

Query: 73  LFIEMMDRGLQS-DVVTFNV-----------------------------------IMDEL 96
           L  EM D G +S  +VTFN+                                   I+  L
Sbjct: 294 LLAEM-DGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARL 352

Query: 97  CKNRKMDEATRLLDLMIQGGVRP------------------DAFCEINIVA--------- 129
           CK  K+D   + LD M+     P                  +AF  I  +          
Sbjct: 353 CKEGKVDLVVKCLDQMMYRRCNPNEGTYNAIAVLCEEGKVQEAFSIIQSLGNKQNSSTHD 412

Query: 130 -YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  +I  LC+ G    A +L   +T+ G +P+  TY+  I  LC++  +D+A ++F  M
Sbjct: 413 FYKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIM 472

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           E     P+   F  L+    +  +T   + +   M K+  MP  +  +IIV+ +   E
Sbjct: 473 EENYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQE 530



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 6/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NTVTYN+++ GLC  G + ++ ++  +   + + PNV TY+ L+         +EA  L 
Sbjct: 166 NTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLL 225

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            E++ +G + ++V++NV++  LCK  + +EA +    +   G  P      N+V+Y  L+
Sbjct: 226 DEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSP------NVVSYNILL 279

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC  G+ + A+EL   +      P++VT+NI I +L    Q D+A ++  DM      
Sbjct: 280 RSLCYEGRWEKAKELLAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFK 339

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
                +  ++    ++ +   V++ L  M  R   P
Sbjct: 340 ATAASYNPIIARLCKEGKVDLVVKCLDQMMYRRCNP 375



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 30/189 (15%)

Query: 72  YLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFCEI---- 125
           +L++E M+ +G + D      +M ELCK+ KM +AT++++LMI  G  PD A C      
Sbjct: 82  FLYLEYMIGKGHKPDGGQATQLMYELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNN 141

Query: 126 ------------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
                                   N V Y  L+ GLC  G L  + ++     + GL+PN
Sbjct: 142 LCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPN 201

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V TY+  + A   +   D+A  L  ++  KG  PN V +  L+    ++  T + ++  R
Sbjct: 202 VFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFR 261

Query: 222 SMDKRNVMP 230
            +  +   P
Sbjct: 262 DLPSKGFSP 270



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 7/228 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K    +YN II  LCKEG VD   +   QM     NPN  TYN+ I   C      EA  
Sbjct: 339 KATAASYNPIIARLCKEGKVDLVVKCLDQMMYRRCNPNEGTYNA-IAVLCEEGKVQEAFS 397

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   + ++   S    +  ++  LC+      A +LL  M + G  PD++       Y  
Sbjct: 398 IIQSLGNKQNSSTHDFYKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSY------TYSS 451

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  G L  A E+   +      P+V  +N  I  LC   + D +  +F  M  KG
Sbjct: 452 LIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMVKKG 511

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             PN   +T ++     + E      +L+ +  R  +  +++  +++ 
Sbjct: 512 YMPNETTYTIIVEGIAHQEEMELAAAVLKELYLRQAVGRSTLERLVMQ 559



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y  +I  LC++G    A +L  +M      P+  TY+SLI G C     +EA  +F  M 
Sbjct: 414 YKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIME 473

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           +   + DV  FN ++  LCK RK D +  + ++M++ G  P      N   Y  +++G+ 
Sbjct: 474 ENYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMP------NETTYTIIVEGIA 527

Query: 139 KIGKLKNARE------LSQSLTRAGLMPNVVTYNI 167
              +++ A        L Q++ R+ L   V+ Y++
Sbjct: 528 HQEEMELAAAVLKELYLRQAVGRSTLERLVMQYDL 562



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 6/151 (3%)

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
           D   ++ ++++A   L+ MI  G +PD            L+  LCK  K++ A ++ + +
Sbjct: 70  DPRTRDLRLNDAFLYLEYMIGKGHKPDGGQATQ------LMYELCKSNKMRKATKVMELM 123

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
             +G  P+  +    ++ LC    +  A  L   ME  G   N V + +L+         
Sbjct: 124 IGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNL 183

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           S+ +++L    K+ ++P     S +++   K
Sbjct: 184 SQSLQILDKFMKKGLVPNVFTYSFLLEAAYK 214


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 6/190 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P++ TY T+I GLC+ G + +AKELF +M+ +  +P VVTY SLIHG C + D + A 
Sbjct: 187 CPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAI 246

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +G++ +V T++ +MD  CK+     A  LLD+M+     P      N++ Y 
Sbjct: 247 RLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLP------NMITYS 300

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK GKL+ A E+   +   GL P+   Y   I   C+  +  +A +   +M + 
Sbjct: 301 TLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLG 360

Query: 192 GVAPNCVIFT 201
           G++PN + ++
Sbjct: 361 GISPNRLTWS 370



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 108/203 (53%), Gaps = 9/203 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           RE G+   P+  + N +I  LCK  G +D A  +F +M +    P+  TY +LI G C  
Sbjct: 147 REMGI--PPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRL 204

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA+ LF EM  +     VVT+  ++  LC+++ +D A RLL+ M   G++P     
Sbjct: 205 GKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKP----- 259

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+  Y  L+DG CK G    A EL   +     +PN++TY+  +H LC + ++ +A ++
Sbjct: 260 -NVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEI 318

Query: 185 FLDMEVKGVAPNCVIFTTLMPSF 207
              M+++G+ P+  ++  ++  F
Sbjct: 319 LDRMKLQGLRPDAGLYGKIISGF 341



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 7/226 (3%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A  +F +MK+    P+  +Y ++       N    A   +  M + G+   V + NV++ 
Sbjct: 104 AVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIK 163

Query: 95  ELCKNR-KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
            LCKN   MD A R+   M   G  P ++       YG LI GLC++GK+  A+EL + +
Sbjct: 164 ALCKNSGTMDAALRIFREMPNRGCPPHSY------TYGTLIXGLCRLGKIGEAKELFKEM 217

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
                 P VVTY   IH LC  + +D A  L  +M  KG+ PN   +++LM    +   +
Sbjct: 218 ETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCS 277

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           S+ +ELL  M  R  +P     S +V  L K      ++   +R K
Sbjct: 278 SRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMK 323



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 9/231 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NE 69
           C+P+  +Y T+   L  E  +  A   +  M++  I P+V + N LI   C  N G  + 
Sbjct: 116 CEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALC-KNSGTMDA 174

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  +F EM +RG      T+  ++  LC+  K+ EA  L   M      P       +V 
Sbjct: 175 ALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSP------TVVT 228

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI GLC+   L +A  L + +   G+ PNV TY+  +   C      +A +L   M 
Sbjct: 229 YXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMV 288

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +   PN + ++TL+    ++ +  + +E+L  M  + + P A +   I+ 
Sbjct: 289 SRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIIS 339



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 37/209 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY+T++ GLCKEG + +A E+  +MK + + P+   Y  +I GFC           
Sbjct: 294 PNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFC----------- 342

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGC 132
                      D+  F+             EA   LD M+ GG+ P+     +++  +  
Sbjct: 343 -----------DICKFH-------------EAANFLDEMVLGGISPNRLTWSLHVRIHNI 378

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLC       A +L  S+   G+  +  T++  ++  CN   + KA  L  +M + G
Sbjct: 379 VVQGLC-TEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDG 437

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLR 221
             P+   +  ++ +F  + +  +  EL++
Sbjct: 438 CIPDEXTWNAVVCAFWDRRKVRESAELVQ 466


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 117/227 (51%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYNT+I+ L K G +D+AK +  QM D    P+  T+N+LI   C  N   EA  L
Sbjct: 333 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDL 392

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+  +GL  DV TFN++++ LCK        RL + M   G  PD       V Y  L
Sbjct: 393 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDE------VTYNIL 446

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LC +GKL NA +L + +   G   + VTYN  I ALC   ++++A ++F  M+  G+
Sbjct: 447 IDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGI 506

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           + + V F TL+    +        EL+  M K  + P    Y SIL+
Sbjct: 507 SRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILT 553



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN +ID LC  G +  A +L  +M+      + VTYN++I   C      EAE
Sbjct: 436 CAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAE 495

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M   G+    VTFN ++D LCK +++D+AT L++ M++ G++P        + Y 
Sbjct: 496 EVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSN------ITYN 549

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++   CK G LK A ++ +++T  G   +VVTY   I+ LC   +   A  L   M +K
Sbjct: 550 SILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIK 609

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+ P    +  ++ S  R+N     + L R M +    P A    I+
Sbjct: 610 GIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIV 656



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 7/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +TVTYNTIID LCK+  +++A+E+F QM    I+ + VT+N+LI G C A   ++A 
Sbjct: 471 CPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDAT 530

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  GLQ   +T+N I+   CK   + +A  +L+ M   G       EI++V YG
Sbjct: 531 ELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGF------EIDVVTYG 584

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK G+ + A +L + +   G+ P    YN  I +L     +  A  LF +M   
Sbjct: 585 TLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEV 644

Query: 192 GVAPNCVIFTTLMPSFIRKNETSK-VIELLRSMDKRNVMPYASILSIIVDLLV 243
           G  P+ + +  +     R     K   + L  M  +  MP  S   ++ + L+
Sbjct: 645 GEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLL 697



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N +I+ LCK G       LF +MK     P+ VTYN LI   C       A  L
Sbjct: 403 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDL 462

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   G     VT+N I+D LCK  +++EA  + D M   G+   A      V +  L
Sbjct: 463 LKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSA------VTFNTL 516

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  ++ +A EL + + + GL P+ +TYN  +   C    + KA D+   M   G 
Sbjct: 517 IDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGF 576

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + V + TL+    +   T   ++LLR M  + + P     + ++  L +
Sbjct: 577 EIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFR 627



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 114/212 (53%), Gaps = 6/212 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T T+NT+I  LC +  +++A +L  ++  + ++P+V T+N LI+  C   D +   
Sbjct: 366 CLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGI 425

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM   G   D VT+N+++D LC   K+  A  LL  M   G      C  + V Y 
Sbjct: 426 RLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNG------CPRSTVTYN 479

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +ID LCK  +++ A E+   +   G+  + VT+N  I  LC  +++D A +L   M  +
Sbjct: 480 TIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKE 539

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G+ P+ + + +++  + ++ +  K  ++L +M
Sbjct: 540 GLQPSNITYNSILTHYCKQGDLKKAADILETM 571



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VT N +I+G CK G V+ A     +   +   P+ VTYN+ +H  C     + A 
Sbjct: 261 CSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHAL 320

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G   DV T+N +++ L KN ++DEA  +++ M+  G  PD         + 
Sbjct: 321 KVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDT------TTFN 374

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC   +L+ A +L++ LT  GL P+V T+NI I+ALC          LF +M+  
Sbjct: 375 TLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSS 434

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G AP+ V +  L+       +    ++LL+ M+           + I+D L K 
Sbjct: 435 GCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQ 488



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 43/266 (16%)

Query: 13  KPNTVTYNTIIDGLCK-----------------------------------EGFVDKAKE 37
           +P+ VT NT+I  LC+                                   EG ++ A  
Sbjct: 192 QPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALR 251

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDEL 96
           +  +M +   +P  VT N LI+G+C      +A  Y+  E+ D G + D VT+N  +  L
Sbjct: 252 VKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIAD-GFEPDQVTYNTFVHCL 310

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C+N  +  A +++DLM+Q G  PD F       Y  +I+ L K G+L  A+ +   +   
Sbjct: 311 CQNGHVSHALKVMDLMLQEGHDPDVF------TYNTVINCLSKNGELDEAKGIVNQMVDR 364

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G +P+  T+N  I ALC+  ++++A DL  ++ VKG++P+   F  L+ +  +  +    
Sbjct: 365 GCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 424

Query: 217 IELLRSMDKRNVMPYASILSIIVDLL 242
           I L   M      P     +I++D L
Sbjct: 425 IRLFEEMKSSGCAPDEVTYNILIDHL 450



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 9/241 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FGV  + +T  YN +++ L +   +   + ++ +M D  I P+VVT N+LI   C A+  
Sbjct: 154 FGV--QADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQV 211

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  +  EM    +  D  TF  +M    +   ++ A R+   M++ G  P        
Sbjct: 212 RTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTR------ 265

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V    LI+G CK+G++++A    Q     G  P+ VTYN  +H LC +  +  A  +   
Sbjct: 266 VTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDL 325

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNE 246
           M  +G  P+   + T++    +  E  +   ++  M  R  +P  +   ++IV L  +N 
Sbjct: 326 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNR 385

Query: 247 I 247
           +
Sbjct: 386 L 386



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 7/197 (3%)

Query: 45  ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
           E+  P+   Y  +I     A   +  E L  EM   G ++        ++   + R+ D+
Sbjct: 83  EDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDD 142

Query: 105 ATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           A  L+   +   GV+ D         Y  L++ L +  ++K    +   +T  G+ P+VV
Sbjct: 143 AVDLVRNQLNTFGVQADT------AVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVV 196

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T N  I ALC   Q+  A  +  +M    VAP+   FTTLM  FI +      + +   M
Sbjct: 197 TLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKM 256

Query: 224 DKRNVMPYASILSIIVD 240
            +    P    ++++++
Sbjct: 257 METGCSPTRVTVNVLIN 273



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY T+I+GLCK G    A +L   M+ + I P    YN +I      N+  +A  LF
Sbjct: 579 DVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLF 638

Query: 75  IEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            EM + G   D +T+ ++   LC+    + EA   L  M+  G  P+ F    ++A G L
Sbjct: 639 REMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPE-FSSFRMLAEGLL 697

Query: 134 IDGL 137
             G+
Sbjct: 698 NLGM 701


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 126/294 (42%), Gaps = 59/294 (20%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  RE G  C PN VTY  +I    K   V  A ELF  M  E   PN+VTY++LI G C
Sbjct: 542 NEMREVG--CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599

Query: 63  YANDGNEAEYLFIEMM----------------DRGLQSDVVTFNVIMDELCKNRKMDEAT 106
            A    +A  +F  M                 D   + +VVT+  ++D  CK+ +++EA 
Sbjct: 600 KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEAR 659

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL-------- 158
           +LLD M   G      CE N + Y  LIDGLCK+GKL  A+E+   ++  G         
Sbjct: 660 KLLDAMSMEG------CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713

Query: 159 ---------------------------MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
                                       PNVV Y   I  LC   + D+A+ L   ME K
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  PN V +T ++  F    +    +ELL  M  + V P      +++D   KN
Sbjct: 774 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKN 827



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 125/235 (53%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN + Y+ +IDGLCK G +D+A+E+  +M +      + TY+SLI  +      + A 
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M++     +VV +  ++D LCK  K DEA +L+ +M + G +P      N+V Y 
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQP------NVVTYT 783

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG   IGK++   EL + +   G+ PN VTY + I   C +  +D AH+L  +M+  
Sbjct: 784 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 843

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               +   +  ++  F    E  + + LL  + + +  P+ S+  +++D L+K +
Sbjct: 844 HWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 124/240 (51%), Gaps = 10/240 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TY  ++D  CK G +++A++ F +M++    PNVVTY +LIH +  A   + A  LF
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---FCEI------ 125
             M+  G   ++VT++ ++D  CK  ++++A ++ + M      PD    F +       
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 636

Query: 126 -NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V YG L+DG CK  +++ AR+L  +++  G  PN + Y+  I  LC   ++D+A ++
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +M   G       +++L+  + +        ++L  M + +  P   I + ++D L K
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 109/238 (45%), Gaps = 29/238 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  +IDGLCK G  D+A +L   M+++   PNVVTY ++I GF          
Sbjct: 740 CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCL 799

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-------GGVRP----- 119
            L   M  +G+  + VT+ V++D  CKN  +D A  LL+ M Q        G R      
Sbjct: 800 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF 859

Query: 120 -DAFCEI--------------NIVAYGCLIDGLCKIGKLKNARELSQSLT--RAGLMPNV 162
              F E                +  Y  LID L K  +L+ A  L + +    A L+   
Sbjct: 860 NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYS 919

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            TYN  I +LC   +++ A  LF +M  KGV P    F +L+    R ++ S+ + LL
Sbjct: 920 STYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 12/216 (5%)

Query: 14  PNTVTYNTIIDGLCKEG------FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           P  V YN +I  +C +        +D A++ + +M    +  N +  +S     C A   
Sbjct: 405 PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY 464

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            +A  +  EM+ +G   D  T++ +++ LC   KM+ A  L + M +GG+  D +     
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVY----- 519

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  ++D  CK G ++ AR+    +   G  PNVVTY   IHA    +++  A++LF  
Sbjct: 520 -TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           M  +G  PN V ++ L+    +  +  K  ++   M
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 117/271 (43%), Gaps = 35/271 (12%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR     C PN VTY+T++ G   +  + + K +   M  E   P+   +NSL+H +C +
Sbjct: 326 NRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTS 385

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK------MDEATRLLDLMIQGGV- 117
            D + A  L  +M+  G     V +N+++  +C ++       +D A +    M+  GV 
Sbjct: 386 GDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVV 445

Query: 118 ------------------RPDAFCEI----------NIVAYGCLIDGLCKIGKLKNAREL 149
                                AF  I          +   Y  +++ LC   K++ A  L
Sbjct: 446 LNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLL 505

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            + + R GL+ +V TY I + + C    +++A   F +M   G  PN V +T L+ ++++
Sbjct: 506 FEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             + S   EL  +M     +P     S ++D
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALID 596



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 9/231 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++   C+ G    A E   ++KD    P+  TYN LI  F  A+  + A  +  EM  
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
             L+ D  T       LCK  K  EA   L L+      PD       V Y  LI GLC+
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDT------VFYTKLISGLCE 314

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A +    +     +PNVVTY+  +    N +Q+ +   +   M ++G  P+  I
Sbjct: 315 ASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI 374

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
           F +L+ ++    + S   +LL+ M K   MP   + +I++  +  ++ SLN
Sbjct: 375 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425



 Score = 45.8 bits (107), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMK--DENINPNVVTYNSLIHGFCYANDGNEAE 71
           P    Y  +ID L K   ++ A  L  ++      +     TYNSLI   C AN    A 
Sbjct: 880 PFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAF 939

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
            LF EM  +G+  ++ +F  ++  L +N K+ EA  LLD +
Sbjct: 940 QLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFI 980


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 126/294 (42%), Gaps = 59/294 (20%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  RE G  C PN VTY  +I    K   V  A ELF  M  E   PN+VTY++LI G C
Sbjct: 501 NEMREVG--CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 558

Query: 63  YANDGNEAEYLFIEMM----------------DRGLQSDVVTFNVIMDELCKNRKMDEAT 106
            A    +A  +F  M                 D   + +VVT+  ++D  CK+ +++EA 
Sbjct: 559 KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEAR 618

Query: 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL-------- 158
           +LLD M   G      CE N + Y  LIDGLCK+GKL  A+E+   ++  G         
Sbjct: 619 KLLDAMSMEG------CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 672

Query: 159 ---------------------------MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
                                       PNVV Y   I  LC   + D+A+ L   ME K
Sbjct: 673 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 732

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  PN V +T ++  F    +    +ELL  M  + V P      +++D   KN
Sbjct: 733 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKN 786



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 125/235 (53%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN + Y+ +IDGLCK G +D+A+E+  +M +      + TY+SLI  +      + A 
Sbjct: 629 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 688

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M++     +VV +  ++D LCK  K DEA +L+ +M + G +P      N+V Y 
Sbjct: 689 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQP------NVVTYT 742

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG   IGK++   EL + +   G+ PN VTY + I   C +  +D AH+L  +M+  
Sbjct: 743 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 802

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               +   +  ++  F    E  + + LL  + + +  P+ S+  +++D L+K +
Sbjct: 803 HWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 855



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 124/240 (51%), Gaps = 10/240 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TY  ++D  CK G +++A++ F +M++    PNVVTY +LIH +  A   + A  LF
Sbjct: 476 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 535

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---FCEI------ 125
             M+  G   ++VT++ ++D  CK  ++++A ++ + M      PD    F +       
Sbjct: 536 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 595

Query: 126 -NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V YG L+DG CK  +++ AR+L  +++  G  PN + Y+  I  LC   ++D+A ++
Sbjct: 596 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 655

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +M   G       +++L+  + +        ++L  M + +  P   I + ++D L K
Sbjct: 656 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 715



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 109/238 (45%), Gaps = 29/238 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  +IDGLCK G  D+A +L   M+++   PNVVTY ++I GF          
Sbjct: 699 CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCL 758

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-------GGVRP----- 119
            L   M  +G+  + VT+ V++D  CKN  +D A  LL+ M Q        G R      
Sbjct: 759 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF 818

Query: 120 -DAFCEI--------------NIVAYGCLIDGLCKIGKLKNARELSQSLT--RAGLMPNV 162
              F E                +  Y  LID L K  +L+ A  L + +    A L+   
Sbjct: 819 NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYS 878

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            TYN  I +LC   +++ A  LF +M  KGV P    F +L+    R ++ S+ + LL
Sbjct: 879 STYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 936



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 12/216 (5%)

Query: 14  PNTVTYNTIIDGLCKEG------FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           P  V YN +I  +C +        +D A++ + +M    +  N +  +S     C A   
Sbjct: 364 PGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY 423

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            +A  +  EM+ +G   D  T++ +++ LC   KM+ A  L + M +GG+  D +     
Sbjct: 424 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVY----- 478

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  ++D  CK G ++ AR+    +   G  PNVVTY   IHA    +++  A++LF  
Sbjct: 479 -TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 537

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           M  +G  PN V ++ L+    +  +  K  ++   M
Sbjct: 538 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 573



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 117/271 (43%), Gaps = 35/271 (12%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR     C PN VTY+T++ G   +  + + K +   M  E   P+   +NSL+H +C +
Sbjct: 285 NRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTS 344

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK------MDEATRLLDLMIQGGV- 117
            D + A  L  +M+  G     V +N+++  +C ++       +D A +    M+  GV 
Sbjct: 345 GDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVV 404

Query: 118 ------------------RPDAFCEI----------NIVAYGCLIDGLCKIGKLKNAREL 149
                                AF  I          +   Y  +++ LC   K++ A  L
Sbjct: 405 LNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLL 464

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            + + R GL+ +V TY I + + C    +++A   F +M   G  PN V +T L+ ++++
Sbjct: 465 FEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 524

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             + S   EL  +M     +P     S ++D
Sbjct: 525 AKKVSYANELFETMLSEGCLPNIVTYSALID 555



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 9/231 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++   C+ G    A E   ++KD    P+  TYN LI  F  A+  + A  +  EM  
Sbjct: 163 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 222

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
             L+ D  T       LCK  K  EA   L L+      PD       V Y  LI GLC+
Sbjct: 223 ANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDT------VFYTKLISGLCE 273

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A +    +     +PNVVTY+  +    N +Q+ +   +   M ++G  P+  I
Sbjct: 274 ASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI 333

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
           F +L+ ++    + S   +LL+ M K   MP   + +I++  +  ++ SLN
Sbjct: 334 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 384



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMK--DENINPNVVTYNSLIHGFCYANDGNEAE 71
           P    Y  +ID L K   ++ A  L  ++      +     TYNSLI   C AN    A 
Sbjct: 839 PFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAF 898

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
            LF EM  +G+  ++ +F  ++  L +N K+ EA  LLD +
Sbjct: 899 QLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFI 939


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 132/264 (50%), Gaps = 24/264 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ ++ GLCK G +DKAKEL  Q+++  +  NV+TY+ +I G C A+  ++A  +
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEI 130

Query: 74  FIEM-MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F  M    G   DVVTFN ++  LC   +M EA  L + M + G      CE N+++Y  
Sbjct: 131 FKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAG------CEPNVISYST 184

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGLCK G+L  A  L + +     +P++V Y   +  LC   ++ +A D    M  KG
Sbjct: 185 LLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244

Query: 193 VAPNCVIFTTLMPSFIRKNETSK-----VIELLRS------------MDKRNVMPYASIL 235
              + V F+T++    +K    +     +  L RS            M  RN  P A + 
Sbjct: 245 SKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELF 304

Query: 236 SIIVDLLVKNEISLNSIPQFNRQK 259
           + ++  + K++   + +  F R K
Sbjct: 305 NTLIHAVCKSKRLPDGVLLFQRMK 328



 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 8/217 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +EF   C PN  TYN ++D LCK   +D+A+EL  +M +  ++P+VVTY++L+ G C   
Sbjct: 331 KEF--YCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLG 388

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A  L  EM   G+  D  T   I++ L K  K+D A   L+ M   G  PD     
Sbjct: 389 KLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPD----- 443

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y  L+DGLCK G++  A      +  A   P+V +Y I I ALC   Q   AH +F
Sbjct: 444 -LVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF 502

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            +M  +GV P+ V++ +L+    R       +ELL++
Sbjct: 503 QEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT 539



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 131/282 (46%), Gaps = 49/282 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN ++Y+T++DGLCK G +D+A  L+ +M +++  P++V Y S + G C AN   EA 
Sbjct: 175 CEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEAC 234

Query: 72  YLFIEMMDRGLQSDVVTF-----------------NVIMDELCKNRKMDEATRLLDLMIQ 114
               +M+ +G ++D V F                 N +++ LC++  +DEA +  + MI 
Sbjct: 235 DCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMIS 294

Query: 115 GGVRPDA--------------------------------FCEINIVAYGCLIDGLCKIGK 142
               P A                                +C  N+  Y  ++D LCK  +
Sbjct: 295 RNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQ 354

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           L  A+EL   +   GL P+VVTY+  +  LC   ++D+A DL  +M  +GV P+     +
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDAS 414

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++ +  +  +    +  L +M  R   P     + ++D L K
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 9/235 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN---INPNVVTYNSLIHGFCYANDGNEA 70
           P+   +NT+I  +CK   +     LF +MK        PN+ TYN ++   C A   +EA
Sbjct: 299 PSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEA 358

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + L  EM + GL  DVVT++ ++D LCK  K+D A  LL+ M + GV PD+F + +I   
Sbjct: 359 QELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASI--- 415

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
              ++ L K GK+  A    +++   G  P++VTYN  +  LC   ++D+A      M  
Sbjct: 416 ---LNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVA 472

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               P+   +T ++ +  R  + +    + + M KR V+P   +   ++D L +N
Sbjct: 473 AKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARN 527



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TYN  +D L K      A E F QM+     P+  TY+ ++ G C A + ++A+ L 
Sbjct: 37  SVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELL 96

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            ++ + G++ +V+T++V++D  CK  ++D+A  +   M  GG      C  ++V +  L+
Sbjct: 97  GQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGG-----GCVPDVVTFNSLL 151

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLC   ++  A  L + + +AG  PNV++Y+  +  LC   ++D+A  L+ +M  K   
Sbjct: 152 KGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCV 211

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+ V +T+ +    + N  ++  +  R M  +     A   S ++ +L K 
Sbjct: 212 PDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKK 262



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 11/242 (4%)

Query: 9   GVVCKPNTV--TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           G++CK        N +I+ LC+ G +D+A + F +M   N  P+   +N+LIH  C +  
Sbjct: 257 GILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKR 316

Query: 67  GNEAEYLFIEMMDRG---LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
             +   LF  M          ++ T+N+++D LCK +++DEA  L++ M   G+ PD   
Sbjct: 317 LPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPD--- 373

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
              +V Y  L+DGLCK+GKL  A +L + +++ G+ P+  T    ++AL    ++D A  
Sbjct: 374 ---VVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALS 430

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
               M+ +G  P+ V + TL+    +     + I  L  M      P     +II+  L 
Sbjct: 431 HLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALC 490

Query: 244 KN 245
           ++
Sbjct: 491 RS 492



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 29/260 (11%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYA 64
           RE GV  K N +TY+ +IDG CK   VD A E+F  M       P+VVT+NSL+ G C  
Sbjct: 100 RESGV--KLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSG 157

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA  LF  M   G + +V++++ ++D LCK  ++DEA RL + M++    PD    
Sbjct: 158 ERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPD---- 213

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI-------HA------ 171
             +VAY   + GLCK  ++  A +  + +   G   + V ++  I       HA      
Sbjct: 214 --LVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQ 271

Query: 172 ----LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL---LRSMD 224
               LC    +D+A   F +M  +   P+  +F TL+ +  +       + L   ++SM 
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 225 KRNVMPYASILSIIVDLLVK 244
           +    P     +I+VD L K
Sbjct: 332 EFYCPPNLETYNIMVDNLCK 351



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 106/208 (50%), Gaps = 8/208 (3%)

Query: 43  KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102
           + +    +V TYN  +     AN G  A   F +M  RG   D  T+++++  LCK  ++
Sbjct: 30  RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGEL 89

Query: 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPN 161
           D+A  LL  + + GV+      +N++ Y  +IDG CK  ++ +A E+ ++++   G +P+
Sbjct: 90  DKAKELLGQLRESGVK------LNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPD 143

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVT+N  +  LC+ E+M +A  LF  M   G  PN + ++TL+    +     +   L  
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWE 203

Query: 222 SMDKRNVMP-YASILSIIVDLLVKNEIS 248
            M +++ +P   +  S +  L   N ++
Sbjct: 204 EMVEKSCVPDLVAYTSFVTGLCKANRVA 231



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 61/291 (20%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ VT+N+++ GLC    + +A  LF  M      PNV++Y++L+ G C A   +
Sbjct: 137 GGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLD 196

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L+ EM+++    D+V +   +  LCK  ++ EA      M+  G + DA      V
Sbjct: 197 EACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADA------V 250

Query: 129 AYGCLIDGLCKIGKLKNAR-ELSQSLTRAGL----------------------------- 158
           A+  +I  LCK G  + A+ ++ + L R+G+                             
Sbjct: 251 AFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHA 310

Query: 159 ------MPNVV-------------------TYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
                 +P+ V                   TYNI +  LC  +Q+D+A +L  +M   G+
Sbjct: 311 VCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL 370

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+ V ++ L+    +  +  +  +LL  M K  V P +   + I++ L K
Sbjct: 371 SPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSK 421



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 9/210 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+ ++DGLCK G +D+A +L  +M  E + P+  T  S+++    A   + A   
Sbjct: 372 PDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSH 431

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  RG   D+VT+N ++D LCK  ++DEA   L  M+     PD F      +Y  +
Sbjct: 432 LETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVF------SYTII 485

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LC+ G+   A  + Q + + G++P+ V Y+  +  L  +   D A +L   ++    
Sbjct: 486 ITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALEL---LKTSLC 542

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+ V+   ++    +  +     E++  M
Sbjct: 543 KPDFVMHKMVVDGLCKAGKAEDACEVVERM 572



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 9/174 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT++DGLCK G +D+A     +M      P+V +Y  +I   C +     A  +
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAI 501

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ RG+  D V ++ ++D L +N   D A  LL           + C+ + V +  +
Sbjct: 502 FQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELL---------KTSLCKPDFVMHKMV 552

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           +DGLCK GK ++A E+ + +  AG   +  TY   +  L    ++DKA  L  D
Sbjct: 553 VDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDD 606



 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           +CKP+ V +  ++DGLCK G  + A E+  +M D     +  TY +++ G 
Sbjct: 541 LCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGL 591



 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 140 IGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           +GK+     L   L R  G   +V TYN  + AL        A++ F  M+ +G  P+  
Sbjct: 15  LGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDF 74

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            ++ ++    +  E  K  ELL  + +  V       S+++D
Sbjct: 75  TYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 128/237 (54%), Gaps = 8/237 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNE 69
           C P+  +YN ++ GLC E    +A EL   M D+  +  P+VV+Y+++I G     D ++
Sbjct: 165 CAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDK 224

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   + EM++RG+  DVVT+N I+  LCK + MD+A  +L+ M++ GV PD       + 
Sbjct: 225 AYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDC------IT 278

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++ G C  G+ K A  + + +   G+ P+ VTY   +  LC + +  +A  +   M 
Sbjct: 279 YNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMI 338

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +G+ PN + ++TL+  +  K    ++ +LL  M +  + P   + SI++    K++
Sbjct: 339 KRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQ 395



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y+TIIDGL KEG  DKA   + +M +  I P+VVTYN+++   C A   ++A 
Sbjct: 202 CPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAM 261

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G+  D +T+N I+   C + +  EA  +L+ M   GV PDA      V Y 
Sbjct: 262 DVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDA------VTYT 315

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK G+   AR++  S+ + GL PNV+TY+  +H       + +  DL   M   
Sbjct: 316 SLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRN 375

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ P+  +F+ L+ +  +       + +   M ++ + P       ++D L K+
Sbjct: 376 GIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKS 429



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 41/203 (20%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNTI+  LCK   +DKA ++  +M    + P+ +TYNS++HG+C +    EA  +
Sbjct: 239 PDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGI 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ D VT+  +MD LCKN +  EA ++LD MI+ G++P      N++ Y  L
Sbjct: 299 LEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKP------NVITYSTL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAG-----------------------------------L 158
           + G    G L   R+L   + R G                                   L
Sbjct: 353 LHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRL 412

Query: 159 MPNVVTYNITIHALCNDEQMDKA 181
            P+VVTY   I  LC   ++D A
Sbjct: 413 TPDVVTYGTLIDGLCKSGRVDDA 435



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 5/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY-ANDGNEAEY 72
           P   TY  +I   C+ G +D        +  +      + +  L+   C      N    
Sbjct: 96  PTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNI 155

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G    V ++N+++  LC   +  EA  LL +M   G      C  ++V+Y  
Sbjct: 156 VLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDG----GDCPPDVVSYST 211

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGL K G    A      +   G++P+VVTYN  + ALC  + MDKA D+   M   G
Sbjct: 212 IIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNG 271

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P+C+ + +++  +    ++ + I +L  M    V P A   + ++D L KN
Sbjct: 272 VMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKN 324



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 53/93 (56%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TY+T++ G   +G + + ++L   M    I P+   ++ LI       + + A +
Sbjct: 343 KPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMF 402

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           +F +M  + L  DVVT+  ++D LCK+ ++D+A
Sbjct: 403 VFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDA 435



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 9/182 (4%)

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           D  +   + T+ +++   C+  ++D     L  +I+ G R      +  + +  L+  LC
Sbjct: 91  DGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYR------VEPIIFTPLLKSLC 144

Query: 139 KIGKLKNARELS-QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG--VAP 195
              +  NA  +  + +T  G  P+V +YNI +  LC++ +  +A +L   M   G    P
Sbjct: 145 AEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPP 204

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
           + V ++T++    ++ ++ K       M +R ++P     + IV  L K +    ++   
Sbjct: 205 DVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVL 264

Query: 256 NR 257
           NR
Sbjct: 265 NR 266


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 116/216 (53%), Gaps = 6/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  +Y+++I+  CK+G    A E++  M  +   PN   YN+LI+GFC  +  N+A  ++
Sbjct: 438 DVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIY 497

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           IEM   G    ++T+N ++D LCK  K  EA+ L   M++ G +PD      I  Y  LI
Sbjct: 498 IEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPD------IRTYASLI 551

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLC+  K+  A  +   +  AGL  +V+ +NI IH LC+  ++D+A  ++L+M+ K  +
Sbjct: 552 RGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCS 611

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           PN V + TLM  F       K   L  ++    + P
Sbjct: 612 PNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKP 647



 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN+  YN +I+G C+   ++ A +++++M      P ++TYN+LI G C A    EA 
Sbjct: 470 CKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEAS 529

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM++RG + D+ T+  ++  LC+++K+D A R+ D ++  G+      +++++ + 
Sbjct: 530 SLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGL------QVDVMVHN 583

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLC  GK+  A  +   +      PN+VTYN  +        +DKA  L+  +   
Sbjct: 584 ILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDN 643

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P+ V + T +      N T + + LL  +    +MP     SI+V  ++K
Sbjct: 644 GLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIK 696



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 5/215 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG    PN  TYN I+  LC  G VD+A  LF  ++   + P+ VTY++L+ G    +  
Sbjct: 150 FGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQL 209

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A  L  EM + G+Q+D V +N ++    +    ++A ++ + +++     D     N+
Sbjct: 210 DNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVR-----DPGASPNL 264

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  ++DGLCK+G+ K A E+   +       + VTY I IH LC    +D A  ++ D
Sbjct: 265 ATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSD 324

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           M   G+  +  ++ +L+  F     T +  +   S
Sbjct: 325 MVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDS 359



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            PN  TY  ++DGLCK G   +A E++ +M   N   + VTY  LIHG C + D + A  
Sbjct: 261 SPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAAR 320

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------------- 119
           ++ +M+  GL  DV  +N ++   C+  +  EA +  D     G+R              
Sbjct: 321 VYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLD 380

Query: 120 ----------------DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                           DA C  + V +G LI GLC+ G    A E+ +    +G   +V 
Sbjct: 381 SGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVF 440

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +Y+  I+  C D +   A++++ +M   G  PN  ++  L+  F R ++ +  I++   M
Sbjct: 441 SYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEM 500

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
                 P     + ++D L K E
Sbjct: 501 TSNGCCPTIITYNTLIDGLCKAE 523



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 11/233 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD----ENINPNVVTYNSLIHGFCYANDG 67
           C P   ++NT++D   +      A   F  +        I PN+ TYN ++   C   D 
Sbjct: 115 CNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDV 174

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A  LF  +  RG+  D VT++ +M  L K+ ++D A  LLD M   GV+ DA C    
Sbjct: 175 DRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVC---- 230

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             Y  L+ G  + G  + A ++ + L R  G  PN+ TY + +  LC   +  +A +++ 
Sbjct: 231 --YNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWS 288

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            M       + V +  L+    R  +      +   M K  ++   S+ + ++
Sbjct: 289 RMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLI 341



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 11/169 (6%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG----VRPDAFCEINIVAYGCLIDG 136
           G    V + N ++D   + R+  +A      +  G     + P      N+  Y  ++  
Sbjct: 114 GCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAP------NLQTYNIILRS 167

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LC  G +  A  L  SL R G+ P+ VTY+  +  L   +Q+D A DL  +M   GV  +
Sbjct: 168 LCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQAD 227

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDK-RNVMPYASILSIIVDLLVK 244
            V +  L+    R     K +++   + +     P  +   +++D L K
Sbjct: 228 AVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCK 276


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 132/263 (50%), Gaps = 33/263 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYN IIDG  KEG V+ A  ++ +M    ++PNV TY +LI+GFC +N+ + A  +
Sbjct: 571 PTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKV 630

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
             EM ++G++ DV  +  ++D  C+   M  A++LL  + + G+ P+             
Sbjct: 631 MDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRK 690

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C++ I  Y  LI GL K GKL  A EL   +   G+MP++
Sbjct: 691 LQNMEAALHLHKRMINEGIPCDLQI--YTTLISGLLKEGKLLFASELYAEMLAKGIMPDL 748

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           +TY++ IH LCN  Q++ A  +  DM+ K + P   I+ TL+    ++    +   L   
Sbjct: 749 ITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNE 808

Query: 223 MDKRNVMPYASILSIIVDLLVKN 245
           M  + ++P  +   I+V+  VK+
Sbjct: 809 MLDKGLVPDDTTYDILVNGKVKD 831



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 8/238 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  II+  CK G +DKA E++ QMK+++I+P V   NSLI G+  A    EA  L
Sbjct: 362 PNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKL 421

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F E +  G+ ++V T+N ++  LCK  KM EA  + + M++ GVRP      ++V+Y  +
Sbjct: 422 FDEAVACGI-ANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRP------SVVSYNNM 474

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G + +A  +   +   GL PN++TY++ +         + A  L+  M  + +
Sbjct: 475 ILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENI 534

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           AP+      ++    +   TS+  + L+ + +   +P     + I+D  VK E S+NS
Sbjct: 535 APSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVK-EGSVNS 591



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 120/233 (51%), Gaps = 8/233 (3%)

Query: 13  KP-NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KP N V   T++ G CK+G +D A ELF +M +  I PN VTY  +I   C   + ++A 
Sbjct: 325 KPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAY 384

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ +M ++ +   V   N ++    K R  +EA++L D  +  G+        N+  Y 
Sbjct: 385 EIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI-------ANVFTYN 437

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+  LCK GK+  A  + + + R G+ P+VV+YN  I   C    MD A+ +F++M  K
Sbjct: 438 SLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEK 497

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ PN + ++ LM  + +K +T     L   M   N+ P     +II++ L K
Sbjct: 498 GLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCK 550



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TYN+++  LCKEG + +A  ++ +M  + + P+VV+YN++I G C   D + A  +F
Sbjct: 432 NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVF 491

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCL 133
           +EM+++GL+ +++T++V+MD   K    + A  L D M    + P  F C I       +
Sbjct: 492 VEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNI-------I 544

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK G+   +++  + L + G +P  +TYN  I     +  ++ A  ++ +M   GV
Sbjct: 545 INGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGV 604

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +PN   +T L+  F + N     ++++  M  + +    ++   ++D
Sbjct: 605 SPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALID 651



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 10/228 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YN +I G C++G +D A  +F++M ++ + PN++TY+ L+ G+    D   A  
Sbjct: 465 RPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFG 524

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+  M    +     T N+I++ LCK  +  E+   L  ++Q G  P        + Y C
Sbjct: 525 LYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIP------TCMTYNC 578

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG  K G + +A  +   + + G+ PNV TY   I+  C    MD A  +  +M+ KG
Sbjct: 579 IIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKG 638

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           +  +  ++  L+  F RK +     +LL  + +  + P    Y+S++S
Sbjct: 639 IELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMIS 686



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 119/259 (45%), Gaps = 29/259 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TY+ ++DG  K+G  + A  L+ +M+ ENI P+  T N +I+G C A   +E++ 
Sbjct: 500 KPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQD 559

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC--------- 123
              +++  G     +T+N I+D   K   ++ A  +   M + GV P+ F          
Sbjct: 560 RLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFC 619

Query: 124 --------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                               E+++  Y  LIDG C+ G + NA +L   L   GL PN V
Sbjct: 620 KSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKV 679

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            Y+  I      + M+ A  L   M  +G+  +  I+TTL+   +++ +     EL   M
Sbjct: 680 VYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEM 739

Query: 224 DKRNVMPYASILSIIVDLL 242
             + +MP     S+++  L
Sbjct: 740 LAKGIMPDLITYSVLIHGL 758



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 9/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  T + +I    +EG +++A+  F + K++ +  +   Y+ +I   C   D   A  
Sbjct: 221 KGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALG 280

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM D+G     V F  ++    K  KM EA ++   M+  G +P     +N+V    
Sbjct: 281 LLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCG-KP-----MNVVVATT 334

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G CK G L +A EL   +   G+ PN VTY + I   C +  MDKA++++  M+ K 
Sbjct: 335 LMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKD 394

Query: 193 VAPNCVIFTTLMPSFIRKN---ETSKVIELLRSMDKRNVMPYASILSII 238
           ++P      +L+  +++     E SK+ +   +    NV  Y S+LS +
Sbjct: 395 ISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSWL 443



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 6/227 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N +++   K   ++ A + F  + +++I P +   N  +      N   EA  ++ +M 
Sbjct: 157 FNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMA 216

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
            +G++ D  T +V++    +  K++EA          GV  DA       AY  +I+ +C
Sbjct: 217 SKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDA------RAYSIVIEAVC 270

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K      A  L + +   G +P+ V +   I       +M +A  +  +M   G   N V
Sbjct: 271 KKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVV 330

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + TTLM  + ++ +    +EL   M++  + P     ++I++   KN
Sbjct: 331 VATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKN 377



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/171 (18%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
            +SD   FN +++   K +++++A    + +I+  + P     +NI      +  L K  
Sbjct: 150 FESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVP-CLTVMNI-----FLSELVKNN 203

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
            ++ AR++   +   G+  +  T ++ I A   + ++++A   F + + KGV  +   ++
Sbjct: 204 MIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYS 263

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
            ++ +  +K ++   + LLR M  +  +P+  I + ++ + +K    L ++
Sbjct: 264 IVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAV 314


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN +I+G CK G ++ A ++   M+  N+ PN  TYN LI G+C  N  ++A  +
Sbjct: 391 PNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGV 449

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++R +  DVVT+N ++D  C++   D A RLL LM   G+ PD +       Y  +
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPW------TYTSM 503

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK  +++ A +L  SL +  ++PNVV Y   I   C   ++++AH +   M  K  
Sbjct: 504 IDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNC 563

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN + F  L+       +  +   L   M K ++ P  S  +I++  L+K+
Sbjct: 564 LPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKD 615



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 123/218 (56%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY  +ID LC +  ++KA+EL  QM ++ + PNV+TYN+LI+G+C      +A  
Sbjct: 355 KPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALD 414

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M  R L+ +  T+N ++   CK R + +A  +L+ M++  V PD      +V Y  
Sbjct: 415 VVELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKMLERKVLPD------VVTYNS 467

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C+ G   +A  L   +   GL+P+  TY   I +LC  +++++A DLF  +E K 
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKD 527

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V PN V++T L+  + +  + ++   +L  M  +N +P
Sbjct: 528 VIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLP 565



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 125/235 (53%), Gaps = 7/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N V Y  +I GLC E  +D+A +LF++MKD++  P V TY  LI   C +   +EA 
Sbjct: 284 CRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEAL 343

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM ++G++ ++ T+ V++D LC   K+++A  LL  M++ G+ P      N++ Y 
Sbjct: 344 NLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMP------NVITYN 397

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G CK G +++A ++ + +    L PN  TYN  I   C    + KA  +   M  +
Sbjct: 398 ALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKMLER 456

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            V P+ V + +L+    R         LL  M+ R ++P     + ++D L K++
Sbjct: 457 KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSK 511



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YNT+++ L + G VD+ K+++++M ++ + PN+ TYN +++G+C   +  EA      ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           + GL  D  T+  ++   C+ + +D A ++   M      P   C  N VAY  LI GLC
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEM------PLKGCRRNEVAYTHLIHGLC 299

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
              ++  A +L   +      P V TY + I ALC  E+  +A +L  +ME KG+ PN  
Sbjct: 300 VERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIH 359

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +T L+ S   + +  K  ELL  M ++ +MP
Sbjct: 360 TYTVLIDSLCSQCKLEKARELLGQMLEKGLMP 391



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 124/265 (46%), Gaps = 43/265 (16%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND---- 66
           VC PN  TYN +++G CK G V++A +    + +  ++P+  TY SLI G+C   D    
Sbjct: 214 VC-PNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSA 272

Query: 67  -------------GNEAEY------------------LFIEMMDRGLQSDVVTFNVIMDE 95
                         NE  Y                  LF++M D      V T+ V++  
Sbjct: 273 FKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKA 332

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           LC + +  EA  L+  M + G++P      NI  Y  LID LC   KL+ AREL   +  
Sbjct: 333 LCGSERKSEALNLVKEMEEKGIKP------NIHTYTVLIDSLCSQCKLEKARELLGQMLE 386

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            GLMPNV+TYN  I+  C    ++ A D+   ME + + PN   +  L+  + ++N   K
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHK 445

Query: 216 VIELLRSMDKRNVMPYASILSIIVD 240
            + +L  M +R V+P     + ++D
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLID 470



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 7/230 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY ++ID LCK   V++A +LF  ++ +++ PNVV Y +LI G+C A   NEA  +
Sbjct: 495 PDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLM 554

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ +    + +TFN ++  LC + K+ EAT L + M++  ++P       +     L
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQP------TVSTDTIL 608

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  L K G   +A    Q +  +G  P+  TY   I   C + ++  A D+   M+  GV
Sbjct: 609 IHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGV 668

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA-SILSIIVDLL 242
           +P+   +++L+  +     T+    +L+ M      P   + LS+I  LL
Sbjct: 669 SPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLL 718



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 99/189 (52%), Gaps = 6/189 (3%)

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           YN+L++        +E + +++EM++  +  ++ T+N +++  CK   ++EA + + +++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
           + G+ PD F       Y  LI G C+   L +A ++ + +   G   N V Y   IH LC
Sbjct: 246 EAGLDPDFF------TYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLC 299

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            + ++D+A DLF+ M+     P    +T L+ +       S+ + L++ M+++ + P   
Sbjct: 300 VERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIH 359

Query: 234 ILSIIVDLL 242
             ++++D L
Sbjct: 360 TYTVLIDSL 368



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 29/224 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN++T+N +I GLC +G + +A  L  +M   ++ P V T   LIH      D + A 
Sbjct: 563 CLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAY 622

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F +M+  G + D  T+   +   C+  ++ +A  ++  M + GV PD F       Y 
Sbjct: 623 RRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLF------TYS 676

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM--- 188
            LI G   +G+  +A  + + +   G  P+  T+   I  L             L+M   
Sbjct: 677 SLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHL-------------LEMKYG 723

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           +VKG  P   + + +M       E   V+ELL  M +  V P A
Sbjct: 724 KVKGGEPGVCVMSNMM-------EFDIVVELLEKMVEHGVTPNA 760



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 6/158 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           +N +++ L +   +DE  ++   M++  V P      NI  Y  +++G CK+G ++ A +
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCP------NIYTYNKMVNGYCKVGNVEEANQ 239

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
               +  AGL P+  TY   I   C  + +D A  +F +M +KG   N V +T L+    
Sbjct: 240 YVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLC 299

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +    + ++L   M   +  P     ++++  L  +E
Sbjct: 300 VERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSE 337



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 9/170 (5%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDE 95
           EL  +M +  + PN  +Y  L+ G C   +   AE +F  M  + G+    + FN ++  
Sbjct: 746 ELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSC 805

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPD-AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
            CK  K +EA +++D MI  G  P    C+I       LI  L K G+ +    + Q+L 
Sbjct: 806 CCKLEKHNEAAKVVDDMICVGHLPQLESCKI-------LICRLYKKGEKERGTSVFQNLL 858

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
           + G   + + + I I  +     ++  ++LF  ME  G   +   ++ L+
Sbjct: 859 QCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLI 908



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD-ENINPNVVTYNSLIHGFCYAN 65
           E GV   PN  +Y  ++ G+C+ G +  A+++F  M+  E I+P+ + +N+L+   C   
Sbjct: 753 EHGVT--PNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLE 810

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             NEA  +  +M+  G    + +  +++  L K  + +  T +   ++Q G   D     
Sbjct: 811 KHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDE---- 866

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
             +A+  +IDG+ K G ++   EL   + + G   +  TY++ I  
Sbjct: 867 --LAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/155 (18%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           D V   + + +LC+    DE+  L   +I G              Y  L++ L + G + 
Sbjct: 154 DSVADTLFVLDLCRKMNKDESFELKYKLIIG-------------CYNTLLNSLARFGLVD 200

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
             +++   +    + PN+ TYN  ++  C    +++A+     +   G+ P+   +T+L+
Sbjct: 201 EMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLI 260

Query: 205 PSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
             + ++ +     ++ + M     +RN + Y  ++
Sbjct: 261 MGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLI 295


>gi|222637475|gb|EEE67607.1| hypothetical protein OsJ_25160 [Oryza sativa Japonica Group]
          Length = 225

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 112/187 (59%), Gaps = 9/187 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  GV  + + VTY T+I GLC    VDKA EL  +M +  I PNVV Y+SL+ G+C + 
Sbjct: 21  RSAGV--RADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSG 78

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +   +F+EM ++G++ DVV +  ++D LCK  K  +A  ++D+M++ G+ P      
Sbjct: 79  RWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP------ 132

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+V Y  LI+ +CK G +K A  + + ++  G+ P+VVTYN  I  L +  +MD+A  L 
Sbjct: 133 NVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLL 192

Query: 186 LDMEVKG 192
            +M V+G
Sbjct: 193 EEM-VRG 198



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 107/198 (54%), Gaps = 6/198 (3%)

Query: 26  LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD 85
           LC +   D+A  L   M+   +  +VVTY +LI G C A + ++A  L  EM + G++ +
Sbjct: 4   LCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPN 63

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           VV ++ ++   CK+ + ++  ++   M + G+ PD      +V Y  LID LCK+GK K 
Sbjct: 64  VVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD------VVMYTGLIDSLCKVGKAKK 117

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           A  +   + R GL PNVVTYN+ I+ +C +  + +A  +   M  KGVAP+ V + TL+ 
Sbjct: 118 AHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIK 177

Query: 206 SFIRKNETSKVIELLRSM 223
                 E  + + LL  M
Sbjct: 178 GLSDVLEMDEAMWLLEEM 195



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 10/193 (5%)

Query: 58  IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           +   C     ++A  L   M   G+++DVVT+  ++  LC   ++D+A  L+  M + G+
Sbjct: 1   MRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGI 60

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
            P      N+V Y  L+ G CK G+ ++  ++   ++  G+ P+VV Y   I +LC   +
Sbjct: 61  EP------NVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGK 114

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YAS 233
             KAH +   M  +G+ PN V +  L+    ++    + I +L+ M ++ V P    Y +
Sbjct: 115 AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNT 174

Query: 234 ILSIIVDLLVKNE 246
           ++  + D+L  +E
Sbjct: 175 LIKGLSDVLEMDE 187


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 6/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY  +I   C+ G +D A + F  M D+ + PN   Y  LI GFC   D  +AE L
Sbjct: 419 PDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEEL 478

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+ ++GL   +++F  +++ LCK  ++ EA R+ D++I+ G + D    +NI  +  L
Sbjct: 479 VYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKAD----VNI--FTSL 532

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C IGK+  A  +  ++   G+ P++VTY   ++  C + ++D    LF ++  KGV
Sbjct: 533 IDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGV 592

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P    +  ++        T+   E+ + M +  +       SI++  L +N  +  +I 
Sbjct: 593 KPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAIT 652

Query: 254 QFNR 257
            F +
Sbjct: 653 VFQK 656



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 125/266 (46%), Gaps = 41/266 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN++I  LCK   VDKA+ +  QM    + P+ VTYN+LIHG+       +A  +
Sbjct: 244 PNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRM 303

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY--- 130
           F EM  RG+  + VT +  +  LCK+ +++EA    D M+  G +      +NI++Y   
Sbjct: 304 FKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHK------LNIISYSTL 357

Query: 131 -------GCLID-------------------------GLCKIGKLKNARELSQSLTRAGL 158
                  GCL+D                         G  K G ++ A  + + + + GL
Sbjct: 358 LHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGL 417

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+V+TY   IHA C    MD A D F  M  KGV PN  ++  L+  F    +  K  E
Sbjct: 418 NPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEE 477

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           L+  +  + + P     + +++ L K
Sbjct: 478 LVYEIRNKGLGPCILSFASLINHLCK 503



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 5/236 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           V  P   TY+ +ID  C+   +D A   F  +  + +  +V+  +SL+ G C A   +EA
Sbjct: 98  VALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEA 157

Query: 71  -EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            + LF  M + G   D ++++ ++  +C + +   A  +L + ++ G      C  N+V 
Sbjct: 158 VDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQG----GGCPCNVVV 213

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++ GL K GK+  A +L   +T+ G+ PNVVTYN  IHALC    +DKA  +   M 
Sbjct: 214 YSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMV 273

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             GV P+ V + TL+  +    +  + + + + M  R V+P     S  V  L K+
Sbjct: 274 GNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKH 329



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 124/250 (49%), Gaps = 12/250 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   Y  +I G C  G + KA+EL  +++++ + P ++++ SLI+  C      EA+ 
Sbjct: 453 EPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQR 512

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  ++  G ++DV  F  ++D  C   KM EA R+ D M+  G+ PD      IV YG 
Sbjct: 513 IFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPD------IVTYGT 566

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G CK G++ +   L + L   G+ P   TY I +  L +  +   A ++F +M   G
Sbjct: 567 LVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESG 626

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK------NE 246
           +A     ++ L+    R N T + I + + +   NV     IL+I++  + K       E
Sbjct: 627 IAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAE 686

Query: 247 ISLNSIPQFN 256
               SIP + 
Sbjct: 687 GLFASIPDYG 696



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 122/268 (45%), Gaps = 43/268 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN-------- 65
           PNTVT +T +  LCK G +++A+E F  M  +    N+++Y++L+HG+  A         
Sbjct: 314 PNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNL 373

Query: 66  ------DG---------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                 DG                      EA ++F +M  RGL  DV+T+  ++   C+
Sbjct: 374 FNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCR 433

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              MD+A    + MI  GV P      N   Y CLI G C  G L  A EL   +   GL
Sbjct: 434 MGSMDDAMDKFNHMIDKGVEP------NFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGL 487

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVI 217
            P ++++   I+ LC + ++ +A  +F DM ++ G   +  IFT+L+  +    + S+  
Sbjct: 488 GPCILSFASLINHLCKEGRVFEAQRIF-DMIIRTGEKADVNIFTSLIDGYCLIGKMSEAF 546

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +  +M    + P       +V+   KN
Sbjct: 547 RVHDAMVSVGIEPDIVTYGTLVNGCCKN 574



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +++ ++I+ LCKEG V +A+ +F  +       +V  + SLI G+C     +EA  +
Sbjct: 489 PCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRV 548

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G++ D+VT+  +++  CKN ++D+   L   ++  GV+P  F       YG +
Sbjct: 549 HDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTF------TYGII 602

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGL   G+   A+E+ Q +  +G+   + TY+I +  LC +   ++A  +F  +    V
Sbjct: 603 LDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNV 662

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + VI   ++    +     +   L  S+    ++P     +I+++ L+K
Sbjct: 663 KFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIK 713



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY T+++G CK G +D    LF ++  + + P   TY  ++ G  +A     A+ 
Sbjct: 558 EPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKE 617

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM++ G+   + T+++++  LC+N   +EA  +   +    V+ D      IV    
Sbjct: 618 MFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFD------IVILNI 671

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  + K  + + A  L  S+   GL+P V TY I +  L  +  +++A  +F  M   G
Sbjct: 672 MISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSG 731

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV---KNEISL 249
           ++P       ++ + + K E  K    +  +D ++++  AS  S+++ L     K+   L
Sbjct: 732 LSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTASMLLSLFSCKGKHREHL 791

Query: 250 NSIP 253
           N +P
Sbjct: 792 NLLP 795


>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
 gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
          Length = 455

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 130/238 (54%), Gaps = 8/238 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G++  P+  +Y  +++ LCK G +  A +L  +M++     N VTYNSL+ G C   +
Sbjct: 13  ESGII--PDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLVRGLCMHGN 70

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            N++  L  ++M +GL  +  T++ +++   K R ++EA +LLD +I  G +P      N
Sbjct: 71  LNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQP------N 124

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V+Y  L+ GLCK G+ + A    + L   G  PNVV+YNI + +LC++ + ++A+ L  
Sbjct: 125 LVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLA 184

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +M+ +  +P+ V +  L+ S           E+L  M + +  P A+  + I+  L K
Sbjct: 185 EMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSATTYNPIIAHLCK 242



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 118/262 (45%), Gaps = 30/262 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V+YN I+  LC EG  ++A +L  +M  E  +P++VTYN LI    +      A  +
Sbjct: 158 PNVVSYNIILRSLCHEGRWEEANQLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEV 217

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-------------------Q 114
             EM+    +    T+N I+  LCK  K+D   + LD MI                   Q
Sbjct: 218 LDEMVRASFKPSATTYNPIIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNAIAVLCKQ 277

Query: 115 GGVRPDAFCEINIVA----------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           G V P+AF  I  +           Y  +I  LC+ G    A +L   +T+ G +P+  T
Sbjct: 278 GRV-PEAFSIIQNLGNKQRSSTHDFYKGVITSLCRKGNTYPAFQLLYEMTKFGFVPDPYT 336

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+  I  LC +  +D+A ++F  +E     P    F  L+  F +   T   +++L  M 
Sbjct: 337 YSSLIRGLCIEGMLDEALEIFRLLEENDYRPILDNFNALILGFCKSGRTDLSLDILEMMV 396

Query: 225 KRNVMPYASILSIIVDLLVKNE 246
           ++   P  +  +IIV+ +   E
Sbjct: 397 EKGYTPNETTYTIIVEGIAHEE 418



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 11/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V+YN ++ GLCKEG  ++A   F  +  +  NPNVV+YN ++   C+     EA  
Sbjct: 122 QPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEANQ 181

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM        +VT+N+++  L  + +++ A  +LD M++   +P A        Y  
Sbjct: 182 LLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSA------TTYNP 235

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK GKL    +    +      PN  T+N  I  LC   ++ +A  +  ++  K 
Sbjct: 236 IIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFN-AIAVLCKQGRVPEAFSIIQNLGNKQ 294

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            +     +  ++ S  RK  T    +LL  M K   +P    Y+S++
Sbjct: 295 RSSTHDFYKGVITSLCRKGNTYPAFQLLYEMTKFGFVPDPYTYSSLI 341



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NTVTYN+++ GLC  G ++++ +L  ++  + + PN  TY+ L+         NEA  L 
Sbjct: 54  NTVTYNSLVRGLCMHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLL 113

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            E++ +G Q ++V++NV++  LCK  + +EA R    +   G  P      N+V+Y  ++
Sbjct: 114 DEIIAKGWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNP------NVVSYNIIL 167

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC  G+ + A +L   +      P++VTYNI I +L    +++ A ++  +M      
Sbjct: 168 RSLCHEGRWEEANQLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFK 227

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           P+   +  ++    ++ +   VI+ L  M      P     + I  L
Sbjct: 228 PSATTYNPIIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNAIAVL 274



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 40/215 (18%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL--------------- 57
           KP+  TYN II  LCKEG +D   +   QM     NPN  T+N++               
Sbjct: 227 KPSATTYNPIIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNAIAVLCKQGRVPEAFSI 286

Query: 58  -------------------IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                              I   C   +   A  L  EM   G   D  T++ ++  LC 
Sbjct: 287 IQNLGNKQRSSTHDFYKGVITSLCRKGNTYPAFQLLYEMTKFGFVPDPYTYSSLIRGLCI 346

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              +DEA  +  L+ +   RP       +  +  LI G CK G+   + ++ + +   G 
Sbjct: 347 EGMLDEALEIFRLLEENDYRPI------LDNFNALILGFCKSGRTDLSLDILEMMVEKGY 400

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            PN  TY I +  + ++E+ + A ++  ++ ++ V
Sbjct: 401 TPNETTYTIIVEGIAHEEEKELAAEVLKELLLRQV 435



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 6/129 (4%)

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           M +ATR++++MI+ G+ PDA       +Y  L++ LCK G + +A +L + +   G   N
Sbjct: 1   MKKATRVMEMMIESGIIPDA------ASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTN 54

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
            VTYN  +  LC    ++++  L   +  KG+ PN   ++ L+ +  ++   ++ ++LL 
Sbjct: 55  TVTYNSLVRGLCMHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLD 114

Query: 222 SMDKRNVMP 230
            +  +   P
Sbjct: 115 EIIAKGWQP 123



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 67/113 (59%), Gaps = 3/113 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG V  P+  TY+++I GLC EG +D+A E+F  +++ +  P +  +N+LI GFC +  
Sbjct: 327 KFGFV--PDPYTYSSLIRGLCIEGMLDEALEIFRLLEENDYRPILDNFNALILGFCKSGR 384

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVR 118
            + +  +   M+++G   +  T+ +I++ +    + + A  +L +L+++  +R
Sbjct: 385 TDLSLDILEMMVEKGYTPNETTYTIIVEGIAHEEEKELAAEVLKELLLRQVMR 437


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 124/298 (41%), Gaps = 64/298 (21%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P   TYN +++GLCK G +++A +L  ++ D    P+VVTY SLI G        EA 
Sbjct: 65  CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAY 124

Query: 72  YLFIEMMDRGLQ-----------------------------------SDVVTFNVIMDEL 96
            LF EM  RGL                                     DVVT + ++D L
Sbjct: 125 KLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGL 184

Query: 97  CKNRKMDEATRLLDLMIQGGVRPD-----------------------------AFCEINI 127
           CK  ++  A R+   M   G+ P+                             AFC  + 
Sbjct: 185 CKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 244

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + Y  LIDGLCK G +  AR     +  AG  P+V TYNI I   C     D A  +F D
Sbjct: 245 ITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD 304

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           M     +PN V + TL+    ++ + +K     + M +R   P + + S +VD L K+
Sbjct: 305 MSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKS 362



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 118/245 (48%), Gaps = 7/245 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT +T+IDGLCK G +  A  +F  M+   + PN V Y++LIHG C A   + A 
Sbjct: 170 CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 229

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M       D +T+N+++D LCK+  +  A    D M++ G +PD +       Y 
Sbjct: 230 EMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVY------TYN 283

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G CK G    A  +   ++ +   PNVVTY   I  LC   Q+ KA   +  M+ +
Sbjct: 284 ILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKER 343

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+  ++++L+    +  +      L   M++  V    +   +I  L   N +   +
Sbjct: 344 GCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVD-EA 402

Query: 252 IPQFN 256
           +  FN
Sbjct: 403 VSLFN 407



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +  TY TI+D L K   + +A  L  ++      P + TYN+L++G C      EA 
Sbjct: 30  CTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAI 89

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +++D G   DVVT+  ++D L K ++  EA +L   M   G+  D  C      Y 
Sbjct: 90  DLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVC------YT 143

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GL + GK+  A  + +++T  G +P+VVT +  I  LC   ++  A  +F  ME +
Sbjct: 144 ALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEAR 203

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+APN V+++ L+    +  +    +E+L  M K    P     +I++D L K+
Sbjct: 204 GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 257



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 8/201 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T+TYN +IDGLCK G V  A+  F +M +    P+V TYN LI GFC A + + A 
Sbjct: 240 CTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 299

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M       +VVT+  ++  LCK R++ +A+     M + G  PD+F       Y 
Sbjct: 300 GVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSF------VYS 353

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DGLCK GKL+    L   + R+G+  N  T    I  LC   ++D+A  LF  +  +
Sbjct: 354 SLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKE 412

Query: 192 GVAPNCVIFTTLMPSFIRKNE 212
           G+ P+   + +++ + I+  +
Sbjct: 413 GM-PHPYAYNSIISALIKSGK 432



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 52/124 (41%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GL K G L  A  L+Q  T  G   ++ TY   +  L  ++++ +A  L   +   G
Sbjct: 5   LINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANG 64

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             P    +  L+    +     + I+LLR +      P     + ++D L K + S  + 
Sbjct: 65  CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAY 124

Query: 253 PQFN 256
             F 
Sbjct: 125 KLFK 128


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TVTYN I+DGLCK G V +A   FL M++      VVTY++L+ GFC   + + A  LF
Sbjct: 393 STVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELF 452

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+DRG + ++V++N+I+  LC+  K+ +A    + ++Q  + PD +       +   +
Sbjct: 453 RRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVY------TFNSFL 506

Query: 135 DGLC-KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            GLC ++  + +  EL +S+   G  PN+ +Y+I +  +C    ++   ++F +M  +GV
Sbjct: 507 HGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGV 566

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           AP+ V+F TL+          + +E+ R +++R+     S  S++
Sbjct: 567 APDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLL 611



 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY +IIDGLCK G V++  E F +M++    P+ VTY +LI GF  A    +A  +
Sbjct: 322 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRV 381

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+  G     VT+N+I+D LCK  ++ EA      M + G      C   +V Y  L
Sbjct: 382 YRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERG------CVATVVTYSAL 435

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG C  G +  A EL + +   G  PN+V+YNI I  LC   ++ KA+  F  +  + +
Sbjct: 436 MDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL 495

Query: 194 APNCVIFTTLMPSFIRKNET-SKVIELLRSMDKRNVMPYASILSIIVD 240
            P+   F + +    ++ +T    +EL  SM  +   P     SI++D
Sbjct: 496 CPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMD 543



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 11/233 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY  +IDG  K   + KA  ++ QM       + VTYN ++ G C A    EA  
Sbjct: 356 EPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYA 415

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F+ M +RG  + VVT++ +MD  C    +  A  L   M+  G      CE N+V+Y  
Sbjct: 416 TFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG------CEPNLVSYNI 469

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD---LFLDME 189
           +I GLC+ GKL  A    + L +  L P+V T+N  +H LC  +++D   D   LF  M 
Sbjct: 470 IIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLC--QRLDTVGDGVELFESMV 527

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            +G +PN   ++ LM    R       +E+   M  R V P   + + ++  L
Sbjct: 528 SQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWL 580



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 8/199 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C    VTY+ ++DG C EG V  A ELF +M D    PN+V+YN +I G C A    +A 
Sbjct: 425 CVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAY 484

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + F +++ R L  DV TFN  +  LC+    + +   L + M+  G  P      N+ +Y
Sbjct: 485 FYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSP------NLHSY 538

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L+DG+C+ G L+   E+   +   G+ P+VV +N  I  LC   ++D+A ++F ++E 
Sbjct: 539 SILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELER 598

Query: 191 KGVAPNCVIFTTLMPSFIR 209
           +  AP+   + +L+ +  R
Sbjct: 599 RS-APDAWSYWSLLDALSR 616



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 11/237 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN  IDGLCK   VD A +L  +M ++   P  VTY +L+ G   A   +EA 
Sbjct: 72  CEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAM 131

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M+++G    + T+ V++D L K  +++EA R+   M+  G RPDAF       Y 
Sbjct: 132 AILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAF------VYT 185

Query: 132 CLIDGLCKIGKLKNA----RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            LI GL KIGKL  A     ++ ++    G+ P+VV +N+ I  LC    ++ A   F +
Sbjct: 186 ALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDE 245

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++   +      F  L+ +  +   T + I  ++ M +R   P     + +VD  +K
Sbjct: 246 LD-DSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLK 301



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T+N ++  LCK    ++A     +M +    P + TY SL+ GF      +EA     E 
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++RG   D VT+  I+D LCK  +++E       M   G  PDA      V Y  LIDG 
Sbjct: 316 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDA------VTYAALIDGF 369

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
            K   +  A  + + + ++G + + VTYNI +  LC   ++ +A+  FL ME +G     
Sbjct: 370 MKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATV 429

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V ++ LM  F  +   S  +EL R M  R   P     +II+  L +
Sbjct: 430 VTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 476



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 12/222 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD---ENINPNVVTYNSLIHGFCYANDGN 68
           C P   TY +++DG  K G +D+A    LQ+K+       P+ VTY S+I G C      
Sbjct: 285 CFPTLFTYTSLVDGFLKLGRLDEA---LLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVE 341

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           E    F EM +RG + D VT+  ++D   K + + +A R+   M+Q G        ++ V
Sbjct: 342 EGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGT------VVSTV 395

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  ++DGLCK G++  A     ++   G +  VVTY+  +   C++  +  A +LF  M
Sbjct: 396 TYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRM 455

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             +G  PN V +  ++    R  + +K       + +R + P
Sbjct: 456 LDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCP 497



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 13/229 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T     +++GLCK G +D+A  L  +M     +P++V +  +I+G C     +EA  + 
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSVL 64

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
              +  G + D VT+NV +D LCK  ++D+A +LL  M +    P        V Y  L+
Sbjct: 65  ERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLP------TTVTYTALV 118

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGL K G+L  A  + + +   G  P + TY + I  L    ++++A  +F+DM   G  
Sbjct: 119 DGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCR 178

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMPYASILSIIV 239
           P+  ++T L+    +  +  + +  L  M +    R V P   I ++++
Sbjct: 179 PDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVI 227



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 13/238 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD----ENINPNVVTYNSLIHGFCYANDG 67
           C+P+   Y  +I GL K G +D+A     QM +      + P+VV +N +I   C + + 
Sbjct: 177 CRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNL 236

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            +A   F E+ D  L     TFN ++  LCK  + +EA   +  M +    P  F     
Sbjct: 237 EDALAYFDEL-DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLF----- 290

Query: 128 VAYGCLIDGLCKIGKLKNA-RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             Y  L+DG  K+G+L  A  +L +++ R G +P+ VTY   I  LC   ++++  + F 
Sbjct: 291 -TYTSLVDGFLKLGRLDEALLQLKEAVER-GFIPDAVTYTSIIDGLCKLGRVEEGCERFH 348

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +M  +G  P+ V +  L+  F++     K   + R M +   +      +II+D L K
Sbjct: 349 EMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCK 406



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 10/168 (5%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+DR L  D      +++ LCK  ++D A  LLD M      P   C  ++VA+  +I+G
Sbjct: 1   MIDRKL-VDTRVCTALLNGLCKTGQLDRAMLLLDEM------P---CSPDMVAFTVVING 50

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LC+  +L  A  + +   RAG  P+ VTYN+ I  LC  E++D A  L   M+ K   P 
Sbjct: 51  LCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPT 110

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V +T L+   ++     + + +L  M ++   P     ++++D L K
Sbjct: 111 TVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSK 158



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 9/190 (4%)

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            +L++G C     + A  L  EM       D+V F V+++ LC+ +++DEA  +L+  ++
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEM---PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVR 69

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            G  PD       V Y   IDGLCK  ++ +A +L + +     +P  VTY   +  L  
Sbjct: 70  AGCEPD------YVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLK 123

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
             ++D+A  +   M  KG +P    +T ++    +     +   +   M      P A +
Sbjct: 124 AGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFV 183

Query: 235 LSIIVDLLVK 244
            + ++  L K
Sbjct: 184 YTALISGLAK 193


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 132/264 (50%), Gaps = 24/264 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ ++ GLCK G +DKAKEL  Q+++  +  NV+TY+ +I G C A+  ++A  +
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEI 130

Query: 74  FIEMMD-RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F  M    G   DVVTFN ++  LC   +M EA  L + M + G      CE N+++Y  
Sbjct: 131 FKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAG------CEPNVISYST 184

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGLCK G+L  A  L + +     +P++V Y   +  LC   ++ +A D    M  KG
Sbjct: 185 LLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244

Query: 193 VAPNCVIFTTLMPSFIRKNETSK-----VIELLRS------------MDKRNVMPYASIL 235
              + V F+T++    +K    +     +  L RS            M  RN  P A + 
Sbjct: 245 SKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELF 304

Query: 236 SIIVDLLVKNEISLNSIPQFNRQK 259
           + ++  + K++   + +  F R K
Sbjct: 305 NTLIHAVCKSKRLPDGVLLFQRMK 328



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 8/217 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +EF   C PN  TYN ++D LCK   +D+A+EL  +M +  ++P+VVTY++L+ G C   
Sbjct: 331 KEF--YCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLG 388

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             + A  L  EM   G+  D  T   I++ L K  K+D A   L+ M   G  PD     
Sbjct: 389 KLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPD----- 443

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y  L+DGLCK G++  A      +  A   P+V +Y I I ALC   Q   AH +F
Sbjct: 444 -LVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF 502

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            +M  +GV P+ V++ +L+    R       +ELL++
Sbjct: 503 QEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT 539



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 131/282 (46%), Gaps = 49/282 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN ++Y+T++DGLCK G +D+A  L+ +M +++  P++V Y S + G C AN   EA 
Sbjct: 175 CEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEAC 234

Query: 72  YLFIEMMDRGLQSDVVTF-----------------NVIMDELCKNRKMDEATRLLDLMIQ 114
               +M+ +G ++D V F                 N +++ LC++  +DEA +  + MI 
Sbjct: 235 DCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMIS 294

Query: 115 GGVRPDA--------------------------------FCEINIVAYGCLIDGLCKIGK 142
               P A                                +C  N+  Y  ++D LCK  +
Sbjct: 295 RNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQ 354

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
           L  A+EL   +   GL P+VVTY+  +  LC   ++D+A DL  +M  +GV P+     +
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDAS 414

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++ +  +  +    +  L +M  R   P     + ++D L K
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 9/235 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN---INPNVVTYNSLIHGFCYANDGNEA 70
           P+   +NT+I  +CK   +     LF +MK        PN+ TYN ++   C A   +EA
Sbjct: 299 PSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEA 358

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + L  EM + GL  DVVT++ ++D LCK  K+D A  LL+ M + GV PD+F + +I   
Sbjct: 359 QELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASI--- 415

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
              ++ L K GK+  A    +++   G  P++VTYN  +  LC   ++D+A      M  
Sbjct: 416 ---LNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVA 472

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               P+   +T ++ +  R  + +    + + M KR V+P   +   ++D L +N
Sbjct: 473 AKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARN 527



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TYN  +D L K      A E F QM+     P+  TY+ ++ G C A + ++A+ L 
Sbjct: 37  SVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELL 96

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            ++ + G++ +V+T++V++D  CK  ++D+A  +   M  GG      C  ++V +  L+
Sbjct: 97  GQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGG-----GCVPDVVTFNSLL 151

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLC   ++  A  L + + +AG  PNV++Y+  +  LC   ++D+A  L+ +M  K   
Sbjct: 152 KGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCV 211

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+ V +T+ +    + N  ++  +  R M  +     A   S ++ +L K 
Sbjct: 212 PDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKK 262



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 11/242 (4%)

Query: 9   GVVCKPNTV--TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           G++CK        N +I+ LC+ G +D+A + F +M   N  P+   +N+LIH  C +  
Sbjct: 257 GILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKR 316

Query: 67  GNEAEYLFIEMMDRG---LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
             +   LF  M          ++ T+N+++D LCK +++DEA  L++ M   G+ PD   
Sbjct: 317 LPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPD--- 373

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
              +V Y  L+DGLCK+GKL  A +L + +++ G+ P+  T    ++AL    ++D A  
Sbjct: 374 ---VVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALS 430

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
               M+ +G  P+ V + TL+    +     + I  L  M      P     +II+  L 
Sbjct: 431 HLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALC 490

Query: 244 KN 245
           ++
Sbjct: 491 RS 492



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 29/260 (11%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD-ENINPNVVTYNSLIHGFCYA 64
           RE GV  K N +TY+ +IDG CK   VD A E+F  M       P+VVT+NSL+ G C  
Sbjct: 100 RESGV--KLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSG 157

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA  LF  M   G + +V++++ ++D LCK  ++DEA RL + M++    PD    
Sbjct: 158 ERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPD---- 213

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI-------HA------ 171
             +VAY   + GLCK  ++  A +  + +   G   + V ++  I       HA      
Sbjct: 214 --LVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQ 271

Query: 172 ----LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL---LRSMD 224
               LC    +D+A   F +M  +   P+  +F TL+ +  +       + L   ++SM 
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 225 KRNVMPYASILSIIVDLLVK 244
           +    P     +I+VD L K
Sbjct: 332 EFYCPPNLETYNIMVDNLCK 351



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 106/208 (50%), Gaps = 8/208 (3%)

Query: 43  KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102
           + +    +V TYN  +     AN G  A   F +M  RG   D  T+++++  LCK  ++
Sbjct: 30  RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGEL 89

Query: 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPN 161
           D+A  LL  + + GV+      +N++ Y  +IDG CK  ++ +A E+ ++++   G +P+
Sbjct: 90  DKAKELLGQLRESGVK------LNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPD 143

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVT+N  +  LC+ E+M +A  LF  M   G  PN + ++TL+    +     +   L  
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWE 203

Query: 222 SMDKRNVMP-YASILSIIVDLLVKNEIS 248
            M +++ +P   +  S +  L   N ++
Sbjct: 204 EMVEKSCVPDLVAYTSFVTGLCKANRVA 231



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 61/291 (20%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C P+ VT+N+++ GLC    + +A  LF  M      PNV++Y++L+ G C A   +
Sbjct: 137 GGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLD 196

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L+ EM+++    D+V +   +  LCK  ++ EA      M+  G + DA      V
Sbjct: 197 EACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADA------V 250

Query: 129 AYGCLIDGLCKIGKLKNAR-ELSQSLTRAGL----------------------------- 158
           A+  +I  LCK G  + A+ ++ + L R+G+                             
Sbjct: 251 AFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHA 310

Query: 159 ------MPNVV-------------------TYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
                 +P+ V                   TYNI +  LC  +Q+D+A +L  +M   G+
Sbjct: 311 VCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL 370

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+ V ++ L+    +  +  +  +LL  M K  V P +   + I++ L K
Sbjct: 371 SPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSK 421



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 9/210 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+ ++DGLCK G +D+A +L  +M  E + P+  T  S+++    A   + A   
Sbjct: 372 PDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSH 431

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  RG   D+VT+N ++D LCK  ++DEA   L  M+     PD F      +Y  +
Sbjct: 432 LETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVF------SYTII 485

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LC+ G+   A  + Q + + G++P+ V Y+  +  L  +   D A +L   ++    
Sbjct: 486 ITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALEL---LKTSLC 542

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+ V+   ++    +  +     E++  M
Sbjct: 543 KPDFVMHKMVLDGLCKAGKAEDACEVVERM 572



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 9/174 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT++DGLCK G +D+A     +M      P+V +Y  +I   C +     A  +
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAI 501

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ RG+  D V ++ ++D L +N   D A  LL           + C+ + V +  +
Sbjct: 502 FQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELL---------KTSLCKPDFVMHKMV 552

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           +DGLCK GK ++A E+ + +  AG   +  TY   +  L    ++DKA  L  D
Sbjct: 553 LDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDD 606



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           +CKP+ V +  ++DGLCK G  + A E+  +M D     +  TY S++ G 
Sbjct: 541 LCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGL 591



 Score = 37.0 bits (84), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 140 IGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           +GK+     L   L R  G   +V TYN  + AL        A++ F  M+ +G  P+  
Sbjct: 15  LGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDF 74

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            ++ ++    +  E  K  ELL  + +  V       S+++D
Sbjct: 75  TYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 6/241 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            +G  C P+ V YN +IDG C+ G + +   L  +M+ +   P +VTY SLI+      D
Sbjct: 230 RWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGD 289

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +   LF+EM  RGL  +V  +N ++D LCK     +A  +L  M   G  PD      
Sbjct: 290 LEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPD------ 343

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           I+ +  LI GLC  G ++ A    +   R  L PN ++Y   IH  C   ++  A DL +
Sbjct: 344 IITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLM 403

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +M  +G  P+ V F  L+   +   + S+ + +   M +R V P  +I ++++  L K  
Sbjct: 404 EMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKH 463

Query: 247 I 247
           +
Sbjct: 464 M 464



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 122/267 (45%), Gaps = 45/267 (16%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F   C P+ +T+NT+I GLC EG V KA+    +     +NPN ++Y  LIHGFC   + 
Sbjct: 336 FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGEL 395

Query: 68  NEAEYLFIEMMDRGLQSDVVTF-----------------------------------NVI 92
             A  L +EMM RG   DVVTF                                   NV+
Sbjct: 396 MAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVL 455

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +  LCK   +  A  +L+ M++  V+PD F       Y  LIDG  +   L +AR++ + 
Sbjct: 456 ISGLCKKHMLPAAKNILEEMLEKNVQPDEF------VYATLIDGFIRSENLGDARKIFEF 509

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G+ P++V+ N  I   C    M +A     +M   G  P+   +TT++  + ++  
Sbjct: 510 MEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGN 569

Query: 213 TSKVIELLRSMDKR----NVMPYASIL 235
            +  +  L  M KR    NV+ Y+S++
Sbjct: 570 LNGALRWLCDMIKRKCKPNVVTYSSLI 596



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTY ++I+ L K+G ++K   LFL+M+   ++PNV  YNS+I   C      +A  +
Sbjct: 272 PTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVI 331

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G   D++TFN ++  LC    + +A   L   I+  + P      N ++Y  L
Sbjct: 332 LKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNP------NQLSYTPL 385

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C  G+L  A +L   +   G  P+VVT+   IH L    ++ +A  +   M  + V
Sbjct: 386 IHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 445

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+  I+  L+    +K+       +L  M ++NV P   + + ++D  +++E
Sbjct: 446 FPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSE 498



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   Y T+IDG  +   +  A+++F  M+ + + P++V+ N++I G+C     +EA  
Sbjct: 481 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAIL 540

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               M   G   D  T+  ++    K   ++ A R L  MI+   +P      N+V Y  
Sbjct: 541 CMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKP------NVVTYSS 594

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK G   +A  L  ++    L PNVVTY I I +L   +++ +A   F  M +  
Sbjct: 595 LINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNH 654

Query: 193 VAPNCVIFTTLM 204
            +PN V    L+
Sbjct: 655 CSPNDVTLHYLV 666



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P+  TY T+I G  K+G ++ A      M      PNVVTY+SLI+G+C   D + 
Sbjct: 548 VGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDS 607

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV- 128
           AE LF  M    L  +VVT+ +++  L K  K+  A    + M+     P+      +V 
Sbjct: 608 AEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVN 667

Query: 129 ----AYGCLIDGLCKIGKLKNARELSQSLTRAGLM----PNVVTYNITIHALCNDEQMDK 180
                  C+I+ +C      + ++    + +  +     P    YN  I +LC    + +
Sbjct: 668 GLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLRE 727

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A D    M  KG  PN + F +L+  F           + +SM+ R ++P
Sbjct: 728 ALDFKNRMAKKGYVPNPITFLSLLYGF---------CSVGKSMNWRTILP 768



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G   +V   N ++  L + R+ D+A +L D M+      D +          L+ GLC  
Sbjct: 164 GSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTC------VLVRGLCLE 217

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G+++   +L ++   AG +P+VV YN+ I   C    M +   L  +ME KG  P  V +
Sbjct: 218 GRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTY 277

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +L+    +K +  K+  L   M KR + P   I + ++D L K
Sbjct: 278 GSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCK 321


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 116/214 (54%), Gaps = 9/214 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YN  I GLCK G VD A+  F  +  +   P+  TY +LIHG+  A + +EA  L
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 771

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ RGL  ++VT+N +++ LCK+  +D A RL   + Q G+ P      N+V Y  L
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFP------NVVTYNTL 825

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CKIG +  A +L   +   G+ P+VVTY+  I+ LC    ++++  L   M   GV
Sbjct: 826 IDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885

Query: 194 APNCVIFTTLMPSFIRK---NETSKVIELLRSMD 224
               + + TL+    +    NE SK   L ++M+
Sbjct: 886 DSKLIEYCTLVQGGFKTSNYNEMSKPEALKQNMN 919



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 122/264 (46%), Gaps = 38/264 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +IDG CKEG +DKA   + +M +  ++ N++  ++++ G       +EA  L
Sbjct: 610 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 669

Query: 74  FIEMMDRG--------LQSDV------------------------VTFNVIMDELCKNRK 101
             +M+D G        L+SD+                        + +N+ +  LCK  K
Sbjct: 670 MQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGK 729

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +D+A R   ++   G  PD F       Y  LI G    G +  A  L   + R GL+PN
Sbjct: 730 VDDARRFFSMLSLKGFVPDNF------TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 783

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           +VTYN  I+ LC  E +D+A  LF  +  KG+ PN V + TL+  + +        +L  
Sbjct: 784 IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKD 843

Query: 222 SMDKRNVMPYASILSIIVDLLVKN 245
            M +  + P     S +++ L K+
Sbjct: 844 KMIEEGISPSVVTYSALINGLCKH 867



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 125/234 (53%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N    N++I+G CK G + +A+ +  +M D N+ P+  +YN+L+ G+C     +EA  
Sbjct: 364 KTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 423

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+  G++  V+T+N ++  LC+    D+A ++  LM++ GV PD       V Y  
Sbjct: 424 LCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDE------VGYST 477

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGL K+   + A  L + +   G   + +T+N  I  LC   +M +A ++F  M+  G
Sbjct: 478 LLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLG 537

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +P+ + + TL+  + + +   +  ++  +M++  + P   + + ++  L K+ 
Sbjct: 538 CSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSR 591



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 114/217 (52%), Gaps = 5/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    + +++  CK+G VD+A     +M++  + PN+VTY+SLI+G+    D   A+ +
Sbjct: 224 PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGV 283

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M ++G+  +VVT+ +++   CK  KMDEA ++L      G++ +A    +  AYG L
Sbjct: 284 LKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLR-----GMQEEAALVPDERAYGVL 338

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C+ GK+ +A  L   + R GL  N+   N  I+  C   ++ +A  +   M    +
Sbjct: 339 IDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNL 398

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+   + TL+  + R+  TS+   L   M +  + P
Sbjct: 399 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEP 435



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y  +IDG C+ G +D A  L  +M    +  N+   NSLI+G+C   + +EAE +
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+D  L+ D  ++N ++D  C+     EA  L D M+Q G+ P       ++ Y  L
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEP------TVLTYNTL 443

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC++G   +A ++   + + G+ P+ V Y+  +  L   E  + A  L+ D+  +G 
Sbjct: 444 LKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGF 503

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             + + F T++    +  +  +  E+   M      P       ++D
Sbjct: 504 TKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLID 550



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 116/235 (49%), Gaps = 7/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY+++I+G    G V+ AK +   M ++ ++ NVVTY  LI G+C     +EAE 
Sbjct: 258 EPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEK 317

Query: 73  LFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +   M +   L  D   + V++D  C+  K+D+A RLLD M++ G++       N+    
Sbjct: 318 VLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLK------TNLFICN 371

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G CK G++  A  +   +    L P+  +YN  +   C +    +A +L   M  +
Sbjct: 372 SLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE 431

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G+ P  + + TL+    R       +++   M K  V P     S ++D L K E
Sbjct: 432 GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKME 486



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +T+NT+I GLCK G + +A+E+F +MKD   +P+ +TY +LI G+C A++  +A  +   
Sbjct: 508 ITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M    +   +  +N ++  L K+R++ E T LL  M   G+ P      NIV YG LIDG
Sbjct: 568 MEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTP------NIVTYGALIDG 621

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK G L  A      +T  GL  N++  +  +  L    ++D+A+ L   M   G  P+
Sbjct: 622 WCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD 681

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              F   + S IR     K+ + L    K  ++P   + +I +  L K 
Sbjct: 682 HECF---LKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKT 727



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 24/252 (9%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKEL-FLQM--KDENINPNVVTYNSLIHGFC 62
           R    + K N V  + I+D + +   ++    L F Q   K +N  PNV +Y  L+H   
Sbjct: 54  RRCNAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILS 113

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLM----IQGGV 117
                +E      +++D     D    NVI DEL    R+   +  + D++    ++ G+
Sbjct: 114 RGRMYDETRAYLNQLVDLCKFKD--RGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGL 171

Query: 118 RPDAFCEIN----------IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
             +A    +          + +   L++ L K G+   A  + Q + R G++P+V   +I
Sbjct: 172 TKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSI 231

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK-- 225
            ++A C D ++D+A      ME  GV PN V + +L+  ++   +      +L+ M +  
Sbjct: 232 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKG 291

Query: 226 --RNVMPYASIL 235
             RNV+ Y  ++
Sbjct: 292 VSRNVVTYTLLI 303


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 9/247 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  ++ G+V  PN+ TYN +I  LCKE   +KA E+   M   N+ P  + YN+LI G
Sbjct: 520 LINEVQDLGIV--PNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDG 577

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +   ++  +A  L+ +M+  G+   +VT+ ++++      KM EA  L   MI+ G+ PD
Sbjct: 578 YAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPD 637

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  + + C+I G CK+G +K+A  L + +++ G  PNVVTY   I      ++MDK
Sbjct: 638 E------IIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDK 691

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIV 239
           A  LF  M+   V P+ + +T L+  +     + +V E+   M +  V P Y +  ++ +
Sbjct: 692 ADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENGVFPNYTAYATLGL 751

Query: 240 DLLVKNE 246
            L V  E
Sbjct: 752 HLGVVRE 758



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY+++ DGLCK G  + +  +F  +  E    +V++YN+LI+GF    D   A  
Sbjct: 390 KPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACK 449

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G   +  TFN ++   CK +++D+A  +  +M++ GV      ++NI     
Sbjct: 450 LVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGV------QLNIFTCNI 503

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           + D   + G    A +L   +   G++PN  TYNI I  LC +++ +KA ++   M    
Sbjct: 504 MADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNN 563

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           V P  + + TL+  + +++  +K + L   M K  + P     ++++++ 
Sbjct: 564 VFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMF 613



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTY   I GLC+ G V+ A  L   ++  N   N   YN++IH FC   + +EA  L
Sbjct: 286 PTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFEL 345

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G+     ++++++D LCK  ++++A  L++ M+Q  V+P      ++V Y  L
Sbjct: 346 LEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKP------SLVTYSSL 399

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            DGLCK G  + +  +  +L   G   +V++YN  I+       M  A  L  +M + G 
Sbjct: 400 FDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGS 459

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            PN   F  L+  F ++    K +E+   M K  V
Sbjct: 460 VPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGV 494



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 17/247 (6%)

Query: 5   NREFGVVCK-----------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT 53
            R+ G  CK           PN+ T+N +I G CK   +DKA E+F  M    +  N+ T
Sbjct: 441 QRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFT 500

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
            N +   F       EA  L  E+ D G+  +  T+N+++  LCK +K ++A  +L +M+
Sbjct: 501 CNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVML 560

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
           +  V P   C I+   Y  LIDG  K      A  L   + + G+ P++VTY + I+   
Sbjct: 561 KNNVFP---CAIH---YNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFS 614

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           N  +M +A+ LF +M  KG+ P+ +IFT ++  F +  +      L   M +    P   
Sbjct: 615 NRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVV 674

Query: 234 ILSIIVD 240
             + ++D
Sbjct: 675 TYTCLID 681



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 118/240 (49%), Gaps = 8/240 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  G+   P   +Y+ +IDGLCK+G V+KA +L  +M   N+ P++VTY+SL  G C + 
Sbjct: 350 RSHGI--SPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSG 407

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               +  +F  +   G + DV+++N +++     R M  A +L+  M   G  P++F   
Sbjct: 408 LTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSF--- 464

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               +  LI G CK  +L  A E+   + + G+  N+ T NI       +    +A  L 
Sbjct: 465 ---TFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLI 521

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +++  G+ PN   +  ++    ++ +T K  E+L  M K NV P A   + ++D   K 
Sbjct: 522 NEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQ 581



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 116/245 (47%), Gaps = 11/245 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +  N +I    +   +  A ++F+Q +   +  N+++ N L++ F  AN       LF E
Sbjct: 179 IVANVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEE 238

Query: 77  MMDRGLQSDVVTFNVIMDELCK-----NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           + D G   +V T+ ++M+  CK     N  + +AT +L+ M   G  P       +V YG
Sbjct: 239 LKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESP------TVVTYG 292

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             I GLC+ G ++ A  L + L       N   YN  IH  C + ++ +A +L  DM   
Sbjct: 293 AYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSH 352

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G++P    ++ L+    +K +  K ++L+  M + NV P     S + D L K+ ++  S
Sbjct: 353 GISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEIS 412

Query: 252 IPQFN 256
           +  F+
Sbjct: 413 LSMFH 417



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 115/265 (43%), Gaps = 48/265 (18%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN--------------- 50
           R FG+  + N ++ N +++   +    +  + LF ++KD   +PN               
Sbjct: 205 RRFGL--ELNILSCNFLLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGS 262

Query: 51  -------------------------VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD 85
                                    VVTY + IHG C A     A  L  ++  R    +
Sbjct: 263 FGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLN 322

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
              +N ++ E C+N ++ EA  LL+ M   G+ P A+      +Y  LIDGLCK G+++ 
Sbjct: 323 SYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAY------SYSILIDGLCKKGQVEK 376

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
           A +L + + ++ + P++VTY+     LC     + +  +F ++  +G   + + + TL+ 
Sbjct: 377 ALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLIN 436

Query: 206 SFIRKNETSKVIELLRSMDKRNVMP 230
            F+ + +     +L+  M     +P
Sbjct: 437 GFVLQRDMGSACKLVHEMRMNGSVP 461


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F ++    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KM++A  L D MI  G+ P      N V +  LIDG C
Sbjct: 199 GSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G +  A E  + + R G  P+++TYN  I+ LC +  + +A DL  +M +KG+ P+ +
Sbjct: 253 KTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     +  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALIS 354



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +P+  TY+ +I+GLCKE  ++ A ELF +M    + PN VT+ +LI G C     +
Sbjct: 199 GSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSID 258

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A   + EM+ +G   D++T+N ++  LCK   + +A  L+D M   G++PD       +
Sbjct: 259 LAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDK------I 312

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LIDG CK G L+ A +  + + +  +  + V Y   I  LC + Q   A  +  +M
Sbjct: 313 TYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREM 372

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              G+ P+   +T ++  F +K +     +LL+ M +   +P
Sbjct: 373 LSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 7/186 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G +D A E + +M  +  +P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A +    MI+  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+   A ++ + +   GL P+  TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGH 412

Query: 194 APNCVI 199
            P CV+
Sbjct: 413 VP-CVV 417



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  + G +D+   L   M    I P+V TY+ LI+G C  +  N+A  
Sbjct: 168 RPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+  GL  + VTF  ++D  CK   +D A      M++ G  PD      ++ Y  
Sbjct: 228 LFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A      M  + 
Sbjct: 282 LIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    R+ ++    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKK 394



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E F   ++        T   ++  F           
Sbjct: 63  RSDVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWG 122

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK  +M  A  + D + + G+RP      ++V++  
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +M+ A++LF +M   G
Sbjct: 177 LMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E  + M ++   P
Sbjct: 237 LVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSP 274



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 52/112 (46%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++   K+   K+     + +   G   ++  +NI +H  C + +M  A  +F ++   G
Sbjct: 107 VLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +IR  +  +   L  +M    + P     S++++ L K
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCK 218



 Score = 40.4 bits (93), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P+  TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGHVPCVVT 418


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 126/274 (45%), Gaps = 41/274 (14%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE     KP+   YN +IDG+CKEG ++ A +L  +M D  ++PNVV+Y+ +I+  C + 
Sbjct: 234 RELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSG 293

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           +   A  LF +M  RG  +++ TF  ++       K+ EA  L  LMIQ G      CE 
Sbjct: 294 NVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG------CEP 347

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA-------------- 171
           N+VAY  LI GLC  G L+ A ++   + R+G +PNV TY+I I                
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETW 407

Query: 172 ---------------------LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                                LC +   D+A+ L   M ++G  PN + F T +      
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGN 467

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
                 ++LL  M     +P  +  + ++D L +
Sbjct: 468 GRVEWAMKLLERMQGHGCLPNITTYNELLDALFR 501



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN V YNT+I GLC  G +++A ++  QM+     PNV TY+ LI GF  + D   A 
Sbjct: 345 CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGAS 404

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +  M+  G + +VVT+  ++D LCKN   D+A  L++ M   G  P      N + + 
Sbjct: 405 ETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTP------NTMTFN 458

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             I GLC  G+++ A +L + +   G +PN+ TYN  + AL    + ++A  LF ++E +
Sbjct: 459 TFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEAR 518

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + PN V + T++  F R     + ++L      R   P
Sbjct: 519 NLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAP 557



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 11/236 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY T++  LCK G +D A+EL  + K     P+V  YN+LI G C       A 
Sbjct: 210 CPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDGMCKEGRIEVAI 264

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EMMD G+  +VV+++ I++ LC +  ++ A  L   M   G      C+ NI  + 
Sbjct: 265 KLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG------CDANIHTFT 318

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G    GKL  A +L + + + G  PNVV YN  IH LC++  +++A  +   M+  
Sbjct: 319 PLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS 378

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           G  PN   ++ L+  F +  +     E    M      P     + +VD+L KN +
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSM 434



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 13/239 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EFG  CKP    YN ++D L  E        L+  MK + + PNV TYN L+   C  + 
Sbjct: 137 EFG--CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDR 194

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A  LF+EM ++G   D VT+  ++  LCK  K+D+A  L      G  +P      +
Sbjct: 195 VDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKP------S 243

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LIDG+CK G+++ A +L   +   G+ PNVV+Y+  I++LC    ++ A  LF 
Sbjct: 244 VPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFA 303

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            M ++G   N   FT L+     + +  + ++L + M +    P     + ++  L  N
Sbjct: 304 QMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSN 362



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 9/199 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNT+T+NT I GLC  G V+ A +L  +M+     PN+ TYN L+      N   EA 
Sbjct: 450 CTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAF 509

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF E+  R LQ ++VT+N ++    +   M EA +L    +  G  PD+      + Y 
Sbjct: 510 GLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDS------ITYN 563

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            +I   CK GK+K A +L + ++      P+++TY   I   CN   +++A   FLD  +
Sbjct: 564 TMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMA-FLDKAI 622

Query: 191 -KGVAPNCVIFTTLMPSFI 208
            +G+ PN   +  L+  F 
Sbjct: 623 NQGICPNFATWNALVRCFF 641



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 7/201 (3%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR     C+PN VTY  ++D LCK    D+A  L  +M  E   PN +T+N+ I G C  
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGN 467

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A  L   M   G   ++ T+N ++D L +  K +EA  L   +    ++P     
Sbjct: 468 GRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQP----- 522

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V Y  ++ G  + G +  A +L       G  P+ +TYN  IHA C   ++  A  L
Sbjct: 523 -NLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQL 581

Query: 185 FLDM-EVKGVAPNCVIFTTLM 204
              +  +K   P+ + +T+L+
Sbjct: 582 VERVSSMKEWHPDIITYTSLI 602



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 41/174 (23%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
             Q    T+ V+++ L +  +MD    +L  M   G+     CE   +   C+I+G  ++
Sbjct: 69  AFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGIN---CCEDLFI---CIINGYKRV 122

Query: 141 GKLKNARE-----------------------------------LSQSLTRAGLMPNVVTY 165
           G  + A +                                   L  ++ + GL+PNV TY
Sbjct: 123 GSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTY 182

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           NI + ALC ++++D AH LF++M  KG  P+ V +TT++ S  +  +     EL
Sbjct: 183 NILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 126/246 (51%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+  +ID   K+G +D+A+EL+ QM   +I PN VTYNSLI+G C       A+  
Sbjct: 239 PDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKT 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  +G   +VVT+N +++  CK+R++++  +L   M + G+  D F       Y  L
Sbjct: 299 FDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTF------TYNTL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C++GKL+ A+++   +   G+ P+++T+ I +H LC + ++  A   F DM     
Sbjct: 353 IHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEK 412

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
               V +  ++    + ++  +  EL   +    V P A   +I++  L KN     +  
Sbjct: 413 YLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADE 472

Query: 254 QFNRQK 259
            F R K
Sbjct: 473 LFRRMK 478



 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 6/221 (2%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            PN +TYN++I+G C +G +  AK +F  M  +   P+VVTYN+LI GFC +    +   L
Sbjct: 823  PNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 882

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            F EM  +GL  D  T+N ++   C+  K++ A ++ + M+  GV PD      IV Y  L
Sbjct: 883  FCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPD------IVTYNIL 936

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            +D LC  GK++ A  + + L +  +  +++TYNI I  +C ++++ +A  LF  +  KGV
Sbjct: 937  LDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGV 996

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
              + + + T++    R     +  +L   M +   MP   I
Sbjct: 997  KLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERI 1037



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 124/215 (57%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + +  +ID   KEG + +AK L+ +M   +++PN++TYNSLI+GFC      +A+++
Sbjct: 788 PNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHM 847

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+ +G   DVVT+N ++   CK++++++  +L   M   G+  DAF       Y  L
Sbjct: 848 FDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAF------TYNTL 901

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ GKL  A+++   +   G+ P++VTYNI +  LCN+ +++KA  +  D++   +
Sbjct: 902 IHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQM 961

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             + + +  ++    R ++  +   L RS+ ++ V
Sbjct: 962 DVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGV 996



 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVTYN++I+GLC  G +  AK+ F  M  +   PNVVTYN+LI+GFC +    +   L
Sbjct: 274 PNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKL 333

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   GL  D  T+N ++   C+  K+  A  +   M+  GV PD      I+ +  L
Sbjct: 334 FQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPD------IITHCIL 387

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC  G++ +A      +        +V YNI IH LC  +++++A +LF  + V+GV
Sbjct: 388 LHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGV 447

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
            P+   +T ++    +     +  EL R M +  ++  A
Sbjct: 448 KPDARTYTIMILGLCKNGPRREADELFRRMKEDGIICQA 486



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 7/219 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           +PN V YNT+ID LCK G V+ A EL  +M K   +  ++VTYN+L+ G CY+ +  +A 
Sbjct: 167 EPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAA 226

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M  R +  DV TF  ++D   K   +DEA  L   M+Q  + P      N V Y 
Sbjct: 227 RILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGP------NTVTYN 280

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLC  G+L +A++    +   G  PNVVTYN  I+  C   +++    LF  M  +
Sbjct: 281 SLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYRE 340

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+  +   + TL+  + +  +     ++   M    V P
Sbjct: 341 GLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTP 379



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V YNT+I+GLCK   ++ A E+F  M+ + I  + VTYN+LI G C +    +A  
Sbjct: 717 EPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAAR 776

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ R +  +V+ F  ++D   K   + EA  L   MI+  V P      NI+ Y  
Sbjct: 777 LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHP------NILTYNS 830

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C  G+L +A+ +   +   G  P+VVTYN  I   C  ++++    LF +M  +G
Sbjct: 831 LINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQG 890

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  +   + TL+  + +  + +   ++   M    V P     +I++D L  N
Sbjct: 891 LVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNN 943



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 121/214 (56%), Gaps = 10/214 (4%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C P+ VTYNT+I G CK   V+   +LF +M  + +  +  TYN+LIHG+C A   N A+
Sbjct: 856  CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQ 915

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +F  M+D G+  D+VT+N+++D LC N K+++A  +++ + +  +      +++I+ Y 
Sbjct: 916  KVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQM------DVDIITYN 969

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             +I G+C+  K+K A  L +SLTR G+  + + Y   I  LC +    +A  L   M+  
Sbjct: 970  IIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKED 1029

Query: 192  GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            G  P+  I+   +    R + TS   EL++++ +
Sbjct: 1030 GFMPSERIYDETL----RDHYTSLSAELIKAVHE 1059



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 13/230 (5%)

Query: 8   FGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           FG+ C+       P+ V +  ++  + K    D    LF +M++  I+ ++ ++  LIH 
Sbjct: 600 FGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHC 659

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC  +  + A  L  +MM  G Q  +VT   +++  C+  +  EA  L+D M + G+ P 
Sbjct: 660 FCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEP- 718

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                N+V Y  +I+GLCK   L NA E+   + + G++ + VTYN  I  LCN  +   
Sbjct: 719 -----NVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTD 773

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  L  DM  + + PN + FT L+ +F+++    +   L + M +R+V P
Sbjct: 774 AARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHP 823



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 8/243 (3%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G  + G+V   + VTYNT+I GLC  G    A  L   M    I+PNV+ + +LI  F  
Sbjct: 745 GMEKKGIV--ADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVK 802

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
             +  EA+ L+ EM+ R +  +++T+N +++  C   ++ +A  + DLM+  G  PD   
Sbjct: 803 EGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPD--- 859

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
              +V Y  LI G CK  ++++  +L   +T  GL+ +  TYN  IH  C   +++ A  
Sbjct: 860 ---VVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQK 916

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +F  M   GV P+ V +  L+       +  K + ++  + K  +       +II+  + 
Sbjct: 917 VFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMC 976

Query: 244 KNE 246
           +N+
Sbjct: 977 RND 979



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT  ++++G C+     +A  L   M +  + PNVV YN++I+G C   D N A  
Sbjct: 682 QPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALE 741

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M  +G+ +D VT+N ++  LC + +  +A RLL  M++  + P      N++ +  
Sbjct: 742 IFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDP------NVIFFTA 795

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G L  A+ L + + R  + PN++TYN  I+  C   ++  A  +F  M  KG
Sbjct: 796 LIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKG 855

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             P+ V + TL+  F +       ++L   M  + ++
Sbjct: 856 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLV 892



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 107/217 (49%), Gaps = 7/217 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+ +++ G C    +  A  L   M      PNVV YN+LI   C   D N A  L
Sbjct: 133 PSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALEL 192

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             EM  +G L +D+VT+N ++  LC + +  +A R+L  M +  + PD F       +  
Sbjct: 193 LNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVF------TFTA 246

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G L  A+EL + + ++ + PN VTYN  I+ LC   ++  A   F  M  KG
Sbjct: 247 LIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKG 306

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
             PN V + TL+  F +       ++L + M +  ++
Sbjct: 307 CFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLV 343



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 96/182 (52%), Gaps = 6/182 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYNT+I+G CK   V+   +LF +M  E +  +  TYN+LIHG+C       A+
Sbjct: 307 CFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAK 366

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M+  G+  D++T  +++  LC N ++  A    + M  G         + IVAY 
Sbjct: 367 DIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEK------YLGIVAYN 420

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I GLCK  K++ A EL   L   G+ P+  TY I I  LC +    +A +LF  M+  
Sbjct: 421 IMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKED 480

Query: 192 GV 193
           G+
Sbjct: 481 GI 482



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 6/212 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D A  LF +M      P++V +  ++      N  +   YLF +M + G+  D+ +F ++
Sbjct: 597 DDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTIL 656

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +   C+  +   A  LL  M++ G +P      +IV  G L++G C+  + + A  L  S
Sbjct: 657 IHCFCRCSRFSLALALLGKMMKLGFQP------SIVTLGSLLNGFCQGNRFQEAVSLVDS 710

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   GL PNVV YN  I+ LC +  ++ A ++F  ME KG+  + V + TL+        
Sbjct: 711 MAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGR 770

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +    LLR M KR + P     + ++D  VK
Sbjct: 771 WTDAARLLRDMVKRKIDPNVIFFTALIDTFVK 802



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 117/250 (46%), Gaps = 7/250 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG+    +  ++  +I   C+   +  A  +  +M     +P++VT+ SL+HGFC  N  
Sbjct: 94  FGI--SHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRI 151

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           ++A  L   M+  G + +VV +N ++D LCKN  ++ A  LL+ M + G R  A    ++
Sbjct: 152 HDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKG-RLAA----DL 206

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  L+ GLC  G+ + A  + + +T+  + P+V T+   I A      +D+A +L+  
Sbjct: 207 VTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQ 266

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M    + PN V + +L+             +    M  +   P     + +++   K+  
Sbjct: 267 MLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRR 326

Query: 248 SLNSIPQFNR 257
             + +  F R
Sbjct: 327 VEDGMKLFQR 336



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 6/213 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           ++  +I   C+      A  L  +M      P++VT  SL++GFC  N   EA  L   M
Sbjct: 652 SFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSM 711

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            + GL+ +VV +N +++ LCKNR ++ A  +   M + G+  DA      V Y  LI GL
Sbjct: 712 AELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADA------VTYNTLISGL 765

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G+  +A  L + + +  + PNV+ +   I     +  + +A +L+ +M  + V PN 
Sbjct: 766 CNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNI 825

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + + +L+  F  +        +   M  +   P
Sbjct: 826 LTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFP 858



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 7/214 (3%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           + A +LFL+M      P+VV +  L+             Y   +M   G+  D+ +F ++
Sbjct: 47  EDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTIL 106

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +   C+  ++  A  +L  M++ G  P      +IV +G L+ G C   ++ +A  L  S
Sbjct: 107 IHCFCRCSRLSLALSILGKMMKLGYDP------SIVTFGSLLHGFCLRNRIHDAFSLVAS 160

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG-VAPNCVIFTTLMPSFIRKN 211
           + ++G  PNVV YN  I  LC +  ++ A +L  +ME KG +A + V + TL+       
Sbjct: 161 MVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSG 220

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           E  +   +LR M KR + P     + ++D  VK 
Sbjct: 221 EWRQAARILRDMTKRRINPDVFTFTALIDAFVKQ 254



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 7/191 (3%)

Query: 41  QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           QM+   I+ ++ ++  LIH FC  +  + A  +  +MM  G    +VTF  ++   C   
Sbjct: 90  QMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRN 149

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG-LM 159
           ++ +A  L+  M++ G  P      N+V Y  LID LCK G +  A EL   + + G L 
Sbjct: 150 RIHDAFSLVASMVKSGYEP------NVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLA 203

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            ++VTYN  +  LC   +  +A  +  DM  + + P+   FT L+ +F+++    +  EL
Sbjct: 204 ADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQEL 263

Query: 220 LRSMDKRNVMP 230
            + M + ++ P
Sbjct: 264 YKQMLQSSIGP 274



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 6/168 (3%)

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           GF ++    +A  LF+EM+       VV F  ++  +   R+ +        M   G+  
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISH 98

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           D +      ++  LI   C+  +L  A  +   + + G  P++VT+   +H  C   ++ 
Sbjct: 99  DLY------SFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIH 152

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            A  L   M   G  PN V++ TL+    +  + +  +ELL  M+K+ 
Sbjct: 153 DAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKG 200


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 127/234 (54%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  TY  +IDGLC++G +++A  +  +M  + I P+V+TYN+LI+G+C       A 
Sbjct: 332 CKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAF 391

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M  R  + +V TFN +M+ LC+  K  +A  LL  M+  G+ PD      IV+Y 
Sbjct: 392 ELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPD------IVSYN 445

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLC+ G +  A +L  S+    + P+ +T+   I+A C   + D A      M  K
Sbjct: 446 VLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRK 505

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G++ + V  TTL+    +  +T   + +L ++ K  ++     L++I+D+L K 
Sbjct: 506 GISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKG 559



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 126/248 (50%), Gaps = 29/248 (11%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C PN+V+Y+ +I GLC+ G +++A  L  QM ++   P+  TY  LI   C     ++
Sbjct: 260 VTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDK 319

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--------- 120
           A  LF EM+ RG + +V T+ V++D LC++ K++EA  +   M++  + P          
Sbjct: 320 AFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALIN 379

Query: 121 ----------AF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
                     AF          C+ N+  +  L++GLC++GK   A  L + +   GL P
Sbjct: 380 GYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP 439

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++V+YN+ I  LC +  M+ A+ L   M    + P+C+ FT ++ +F ++ +       L
Sbjct: 440 DIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFL 499

Query: 221 RSMDKRNV 228
             M ++ +
Sbjct: 500 GLMLRKGI 507



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 127/273 (46%), Gaps = 39/273 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +I+G CK+G V  A EL   M+     PNV T+N L+ G C      +A +L
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHL 428

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE 124
              M+D GL  D+V++NV++D LC+   M+ A +LL  M    + PD         AFC+
Sbjct: 429 LKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCK 488

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                               ++ V    LIDG+CK+GK ++A  + ++L +  ++    +
Sbjct: 489 QGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHS 548

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
            N+ +  L    ++ +   +   +   G+ P+ V +TTL+   IR  + +    +L  M 
Sbjct: 549 LNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMK 608

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
               +P     +II+          N + QF R
Sbjct: 609 LSGCLPNVYPYTIII----------NGLCQFGR 631



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 118/265 (44%), Gaps = 44/265 (16%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQ----------------------------------- 41
           + Y TI++ LCK G+ + A E+F+                                    
Sbjct: 196 IDYRTIVNALCKNGYTEAA-EMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFD 254

Query: 42  --MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99
              K+    PN V+Y+ LIHG C      EA  L  +M ++G Q    T+ V++  LC  
Sbjct: 255 VMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDR 314

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             +D+A  L D MI  G +P      N+  Y  LIDGLC+ GK++ A  + + + +  + 
Sbjct: 315 GLIDKAFNLFDEMIPRGCKP------NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIF 368

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+V+TYN  I+  C D ++  A +L   ME +   PN   F  LM    R  +  K + L
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHL 428

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
           L+ M    + P     ++++D L +
Sbjct: 429 LKRMLDNGLSPDIVSYNVLIDGLCR 453



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 130/259 (50%), Gaps = 33/259 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YN +IDGLC+EG ++ A +L   M   +I P+ +T+ ++I+ FC     + A   
Sbjct: 439 PDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAF 498

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV--RPDAF--------- 122
              M+ +G+  D VT   ++D +CK  K  +A  +L+ +++  +   P +          
Sbjct: 499 LGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSK 558

Query: 123 -CEI-----------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
            C++                 ++V Y  L+DGL + G +  +  + + +  +G +PNV  
Sbjct: 559 GCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYP 618

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y I I+ LC   ++++A  L   M+  GV+PN V +T ++  ++   +  + +E +R+M 
Sbjct: 619 YTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMV 678

Query: 225 KR----NVMPYASILSIIV 239
           +R    N   Y+S+L   V
Sbjct: 679 ERGYELNDRIYSSLLQGFV 697



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 99/216 (45%), Gaps = 5/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   Y++++  L K      A   + +M+ +     ++ Y ++++  C       AE   
Sbjct: 159 NYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFM 218

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +++  G   D      ++   C+   + +A ++ D+M +     +  C  N V+Y  LI
Sbjct: 219 SKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSK-----EVTCAPNSVSYSILI 273

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLC++G+L+ A  L   +   G  P+  TY + I ALC+   +DKA +LF +M  +G  
Sbjct: 274 HGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCK 333

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           PN   +T L+    R  +  +   + R M K  + P
Sbjct: 334 PNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFP 369



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 120/246 (48%), Gaps = 26/246 (10%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NE 69
           C PN   Y  II+GLC+ G V++A++L   M+D  ++PN VTY  ++ G  Y N+G  + 
Sbjct: 612 CLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKG--YVNNGKLDR 669

Query: 70  AEYLFIEMMDRGLQ-SDVVTFNVIMDELCKNRKMD--EATRLLDLMIQGGVRPDAFCE-I 125
           A      M++RG + +D +  +++   +   + +D  E + + D+ ++    P+   E I
Sbjct: 670 ALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALR-ETDPECINELI 728

Query: 126 NIVAY--GC-------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           ++V    GC       L+  LCK G+   + +L Q++   G+       +I + + C+ +
Sbjct: 729 SVVEQLGGCISGLCIFLVTRLCKEGRTDESNDLVQNVLERGVFLE-KAMDIIMESYCSKK 787

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK----VIELLRS---MDKRNVM 229
           +  K  +L   +   G  P+   F  ++    ++ +  +    V+ELL S   ++K  V+
Sbjct: 788 KHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDAERARELVMELLTSNGVVEKSGVL 847

Query: 230 PYASIL 235
            Y   L
Sbjct: 848 TYVECL 853



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 13/214 (6%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D+ +E+F          N   Y+SL+      + G  A   +  M   G    ++ +  I
Sbjct: 148 DELREVF------GFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTI 201

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           ++ LCKN   + A   +  +++ G   D+    +      L+ G C+   L++A ++   
Sbjct: 202 VNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTS------LLLGFCRGLNLRDALKVFDV 255

Query: 153 LTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
           +++     PN V+Y+I IH LC   ++++A  L   M  KG  P+   +T L+ +   + 
Sbjct: 256 MSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRG 315

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              K   L   M  R   P     ++++D L ++
Sbjct: 316 LIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRD 349


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 7/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  T  TI++G C+EG +++A   F +MK+  ++PN+  +NSLI GF   ND +    
Sbjct: 528 KPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGE 587

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G++ DVVTF+ +M+       M     +   M++GG+ PD      I A+  
Sbjct: 588 VVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPD------IHAFSI 641

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVK 191
           L  G  + G+ + A+++   + + G+ PNVV Y   I   C+  +M KA  ++  M  + 
Sbjct: 642 LAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIV 701

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G++PN   + TL+  F    +  K  ELL+ M+ +NV+P    + +I D
Sbjct: 702 GLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIAD 750



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%)

Query: 10  VVCKPNTV-----TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           V+C   T      +   +++GL + G   +A  +F  + +E   P+++TY +L+      
Sbjct: 308 VICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQ 367

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +    L  ++   GL+ D + FN I++   ++  +D+A ++ + M + G +P A   
Sbjct: 368 KHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTA--- 424

Query: 125 INIVAYGCLIDGLCKIGKL-KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                +  LI G  KIGKL +++R L   L    L PN  T NI + A CN  ++++A +
Sbjct: 425 ---STFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWN 481

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
           +   M+  GV P+ V F TL  ++ R   T
Sbjct: 482 IVYKMQSYGVKPDVVTFNTLAKAYARIGST 511



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 43/265 (16%)

Query: 13  KPNTVTYNTIIDGLCKE-----------------------------------GFVDKAKE 37
           KP+ +TY T++  L ++                                   G +D+A +
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 410

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM-DRGLQSDVVTFNVIMDEL 96
           +F +MK+    P   T+N+LI G+       E+  L   M+ D  LQ +  T N+++   
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAW 470

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL-SQSLTR 155
           C  RK++EA  ++  M   GV+PD      +V +  L     +IG    A ++    +  
Sbjct: 471 CNQRKIEEAWNIVYKMQSYGVKPD------VVTFNTLAKAYARIGSTCTAEDMIIPRMLH 524

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
             + PNV T    ++  C + +M++A   F  M+  GV PN  +F +L+  F+  N+   
Sbjct: 525 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDG 584

Query: 216 VIELLRSMDKRNVMPYASILSIIVD 240
           V E++  M++  V P     S +++
Sbjct: 585 VGEVVDLMEEFGVKPDVVTFSTLMN 609



 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 21/107 (19%), Positives = 49/107 (45%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GL + G+ + A  +  +L   G  P+++TY   + AL   +       L   +E  G
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ ++F  ++ +        + +++   M +    P AS  + ++
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLI 431


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 6/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G    P+  TY+T ++  CK    D AK++F +M+  +   N VTYN +I G C +    
Sbjct: 238 GAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVE 297

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA     EM+D GL  D  T+  +M+ LCK  ++ EA  LLD M   G++P      N+V
Sbjct: 298 EAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKP------NVV 351

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG  K GK   A ++   +  AG+ PN + Y+  I  LC   Q+ +A  L  +M
Sbjct: 352 VYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEM 411

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              G  P+   +  LM    +  +     ELL  M    ++P A    I+++ L +N
Sbjct: 412 IKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQN 468



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 120/254 (47%), Gaps = 41/254 (16%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N VTYN +I GLC+ G V++A     +M D  ++P+  TY +L++G C      EA+
Sbjct: 276 CAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAK 335

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM   GL+ +VV +  ++D   K  K  EA  +L+ MI  GV+P      N + Y 
Sbjct: 336 ALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQP------NKIMYD 389

Query: 132 CLIDGLCKIGKLKNAR-----------------------------------ELSQSLTRA 156
            LI GLCKIG+L  A                                    EL   +  +
Sbjct: 390 NLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNS 449

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G++PN  TY I I+ LC + +  +A +L  +M  +G+ PN  ++  L+    ++   S  
Sbjct: 450 GILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLA 509

Query: 217 IELLRSMDKRNVMP 230
            E L +M K NV+P
Sbjct: 510 CESLENMTKANVLP 523



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 126/263 (47%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + Y+ +I GLCK G + +A +L  +M      P+  TY+ L+ G     D + A  
Sbjct: 382 QPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFE 441

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L  EM + G+  +  T+ ++++ LC+N +  EA  LL+ MI  G++P+AF          
Sbjct: 442 LLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHS 501

Query: 123 --------CEI-----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                   CE            ++  Y  LI GL  +G+++ A E    + + GL+P+  
Sbjct: 502 KEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEF 561

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY+  IH  C    ++KA  L   M   G+ PN   +T L+  + + N+  KV  +L+SM
Sbjct: 562 TYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSM 621

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
                 P   I  I++  L ++E
Sbjct: 622 LGSGDKPDNHIYGIVIRNLSRSE 644



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 123/255 (48%), Gaps = 29/255 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN++I GL   G +++A+E + Q++   + P+  TY+ LIHG+C   +  +A+ L
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------- 120
             +M++ GL+ +  T+  +++   K+   ++ + +L  M+  G +PD             
Sbjct: 583 LQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 642

Query: 121 ------AFCEINIVA----------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                 AF  +  V           Y  LI GLCK+  ++ A  L   + + GL P +V 
Sbjct: 643 SENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVC 702

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I   C    + +A ++F  +  KG+ PNCV +T L+    +  + +   +L + M 
Sbjct: 703 YNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDML 762

Query: 225 KRNVMPYASILSIIV 239
            R + P A + +++ 
Sbjct: 763 DRGIAPDAFVYNVLA 777



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 10/211 (4%)

Query: 24  DGLCKEGFVDKAKELFLQMKD----ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           +GL K+     A EL  ++K       I P+V TY++ +   C A D + A+ +F EM  
Sbjct: 214 NGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRR 273

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           R    + VT+NV++  LC++  ++EA    + M+  G+ PDAF       YG L++GLCK
Sbjct: 274 RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAF------TYGALMNGLCK 327

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G+LK A+ L   ++ +GL PNVV Y   +     + +  +A D+  +M   GV PN ++
Sbjct: 328 GGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIM 387

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +  L+    +  +  +  +LL  M K    P
Sbjct: 388 YDNLIRGLCKIGQLGRASKLLNEMIKVGHRP 418



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   Y  +I G  KEG +  A E    M   N+ P++  YNSLI G        EAE 
Sbjct: 487 KPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEE 546

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + ++  RGL  D  T++ ++   CK R +++A +LL  M+  G++P+A        Y  
Sbjct: 547 YYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNA------DTYTD 600

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K    +    + QS+  +G  P+   Y I I  L   E M+ A  +  ++E  G
Sbjct: 601 LLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNG 660

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+  I+++L+    +  +  K + LL  M K  + P     + ++D
Sbjct: 661 LVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALID 708



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 31/228 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y+++I GLCK   ++KA  L  +M  E + P +V YN+LI GFC + D + A  +
Sbjct: 663 PDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNV 722

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
           F  ++ +GL  + VT+  ++D  CKN  + +A  L   M+  G+ PDAF   N++A GC 
Sbjct: 723 FDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFV-YNVLATGCS 781

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       L+ G CK G+L+   +L   +    ++PN  T
Sbjct: 782 DAADLEQALFLTEEMFNRGYAHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQT 841

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV-IFTTLMPSFIRKN 211
               I       ++ +AH +F +++ K  + +    F+ L    I K 
Sbjct: 842 VENVITEFGKAGKLCEAHRVFAELQQKKASQSSTDRFSLLFTDMINKG 889



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 7/227 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   Y  +I  L +   ++ A  +  +++   + P++  Y+SLI G C   D  +A  
Sbjct: 627 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVG 686

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   GL+  +V +N ++D  C++  +  A  + D ++  G+ P      N V Y  
Sbjct: 687 LLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLP------NCVTYTA 740

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G + +A +L + +   G+ P+   YN+      +   +++A  L  +M  +G
Sbjct: 741 LIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 800

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            A +  +F+TL+  F ++    +  +LL  M  R ++P A  +  ++
Sbjct: 801 YA-HVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVI 846



 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
               +V++D   KN  +  A +++ +M   G+ P   C   ++      D +  + KLK 
Sbjct: 175 TAVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKG 234

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
             E       AG+ P+V TY+  + A C     D A  +F +M  +  A N V +  ++ 
Sbjct: 235 FME------GAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMIS 288

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              R     +       M    + P A     +++ L K 
Sbjct: 289 GLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKG 328


>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
          Length = 800

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 6/240 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +G  C P+ V YN +IDG C+ G + +   L  +M+ +   P +VTY SLI+      D 
Sbjct: 441 WGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDL 500

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            +   LF+EM  RGL  +V  +N ++D LCK     +A  +L  M   G  PD      I
Sbjct: 501 EKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPD------I 554

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + +  LI GLC  G ++ A    +   R  L PN ++Y   IH  C   ++  A DL ++
Sbjct: 555 ITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLME 614

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           M  +G  P+ V F  L+   +   + S+ + +   M +R V P  +I ++++  L K  +
Sbjct: 615 MMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHM 674



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 6/219 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F   C P+ +T+NT+I GLC EG V KA+    +     +NPN ++Y  LIHGFC   + 
Sbjct: 546 FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGEL 605

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  L +EMM RG   DVVTF  ++  L    K+ EA  + + M +  V PD    +NI
Sbjct: 606 MAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD----VNI 661

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  LI GLCK   L  A+ + + +    + P+   Y   I      E +  A  +F  
Sbjct: 662 --YNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEF 719

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           ME KGV P+ V    ++  + +    S+ I  + +M K+
Sbjct: 720 MEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKQ 758



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   YN++ID LCK     +A  +  QM     +P+++T+N+LI G C+     +AE+ 
Sbjct: 517 PNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHF 576

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E + R L  + +++  ++   C   ++  A+ LL  M+  G  PD      +V +G L
Sbjct: 577 LREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPD------VVTFGAL 630

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL   GK+  A  + + +T   + P+V  YN+ I  LC    +  A ++  +M  K V
Sbjct: 631 IHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNV 690

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+  ++ TL+  FIR        ++   M+ + V P
Sbjct: 691 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRP 727



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTY ++I+ L K+G ++K   LFL+M+   ++PNV  YNS+I   C      +A  +
Sbjct: 482 PTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVI 541

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G   D++TFN ++  LC    + +A   L   I+  + P      N ++Y  L
Sbjct: 542 LKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNP------NQLSYTPL 595

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C  G+L  A +L   +   G  P+VVT+   IH L    ++ +A  +   M  + V
Sbjct: 596 IHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 655

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+  I+  L+    +K+       +L  M ++NV P   + + ++D  +++E
Sbjct: 656 FPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSE 708



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 88/217 (40%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P     N ++  L ++   D A++L+ +M  E+   +  +   L+ G C      E   L
Sbjct: 377 PEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKL 436

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
                  G    VV +NV++D  C+   M     LL  M   G  P       +V YG L
Sbjct: 437 IEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLP------TLVTYGSL 490

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ L K G L+    L   + + GL PNV  YN  I ALC      +A  +   M   G 
Sbjct: 491 INCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGC 550

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ + F TL+     +    K    LR   +R + P
Sbjct: 551 DPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNP 587



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G   +V   N ++  L + R+ D+A +L D M+      D +          L+ GLC  
Sbjct: 374 GSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTC------VLVRGLCLE 427

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G+++   +L ++   AG +P+VV YN+ I   C    M +   L  +ME KG  P  V +
Sbjct: 428 GRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTY 487

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +L+    +K +  K+  L   M KR + P   I + ++D L K
Sbjct: 488 GSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCK 531


>gi|414883803|tpg|DAA59817.1| TPA: hypothetical protein ZEAMMB73_625576 [Zea mays]
          Length = 350

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 10/229 (4%)

Query: 2   ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           ANG    G  C P+ V+YN +IDGL KEG VDKA  LF +M  +   P++VTY+S+I G 
Sbjct: 128 ANG----GYNCSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGL 183

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           C A   ++AE    +M+ +G+  +   +N ++   C   ++ EA RLL  M  GG+    
Sbjct: 184 CKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGL---- 239

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
             ++N+V Y  LID  CKIG+   AR +  S+ R G  PN  TY   +H       +   
Sbjct: 240 --QLNVVTYNMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYATKGALVDM 297

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           HDL   M   G+     +F  L+ ++ +     K + +   M +  + P
Sbjct: 298 HDLLDLMIRDGIPIEHRVFNILIYAYAKHETVDKAMAVFAEMRQNGLRP 346



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 9/236 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMK---DENINPNVVTYNSLIHGFCYANDGNEA 70
           P+  +YN +I GLC E    +A EL L M      N +P+VV+YN +I G     + ++A
Sbjct: 98  PDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYNCSPDVVSYNIVIDGLFKEGEVDKA 157

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            +LF EM  +G   D+VT++ ++D LCK + MD+A   L  M+  GV P      N   Y
Sbjct: 158 YFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMP------NTRPY 211

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI G C +G+L  A  L + ++  GL  NVVTYN+ I   C   +  +A  +F  M  
Sbjct: 212 NSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDSMVR 271

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +G  PN   + +L+  +  K     + +LL  M +  +     + +I++    K+E
Sbjct: 272 RGQKPNATTYCSLLHGYATKGALVDMHDLLDLMIRDGIPIEHRVFNILIYAYAKHE 327



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 100/185 (54%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+++IDGLCK   +DKA+    QM  + + PN   YNSLIHG+C      EA  L
Sbjct: 171 PDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRL 230

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   GLQ +VVT+N+++D  CK  +  EA  + D M++ G +P+A        Y  L
Sbjct: 231 LKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDSMVRRGQKPNA------TTYCSL 284

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L +  +L   + R G+      +NI I+A    E +DKA  +F +M   G+
Sbjct: 285 LHGYATKGALVDMHDLLDLMIRDGIPIEHRVFNILIYAYAKHETVDKAMAVFAEMRQNGL 344

Query: 194 APNCV 198
            PN V
Sbjct: 345 RPNLV 349



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 4/226 (1%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN-DGNEAEYLFIEMM 78
           + +I   C  G +D A   F            V  N LI G C     G+  + +F  M 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMP 92

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           + G   DV ++N ++  LC  +K  EA  LL  M   G      C  ++V+Y  +IDGL 
Sbjct: 93  ELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANG---GYNCSPDVVSYNIVIDGLF 149

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A  L   +   G  P++VTY+  I  LC  + MDKA      M  KGV PN  
Sbjct: 150 KEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNTR 209

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            + +L+  +    +  + + LL+ M    +       ++++D   K
Sbjct: 210 PYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCK 255


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +I G C  G +D A   F +M+ +   PNVVTYN+LI G+C     ++   L
Sbjct: 203 PNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFEL 262

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  +GL+ +++++NV+++ LC+  +M E + +L  M + G   D       V Y  L
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDE------VTYNTL 316

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK G    A  +   + R GL P+V+TY   IH++C    M++A +    M V+G+
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGL 376

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN   +TTL+  F +K   ++   +L+ M      P
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSP 413



 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY T++DG  ++G++++A  +  +M D   +P+VVTYN+LI+G C A    +A  +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAV 437

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M ++GL  DVV+++ ++   C++  +DEA R+   M+  G++PD       + Y  L
Sbjct: 438 LEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDT------ITYSSL 491

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+  + K A +L   + R GL P+  TY   I+A C +  + KA  L  +M  KGV
Sbjct: 492 IQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGV 551

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V ++ L+    ++  T +   LL  +     +P
Sbjct: 552 LPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVP 588



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY ++I  +CK G +++A E   QM+   + PN  TY +L+ GF      NEA  +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+D G    VVT+N +++  C   KM +A  +L+ M + G+ PD      +V+Y  +
Sbjct: 403 LKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPD------VVSYSTV 456

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G C+   +  A  + + +   G+ P+ +TY+  I   C   +  +A DLF +M   G+
Sbjct: 457 LSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGL 516

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   +T L+ ++  + +  K I+L   M ++ V+P     S++++ L K 
Sbjct: 517 PPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQ 568



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGF-VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P  ++YN ++D   +    +  A+ +F +M    ++PNV TYN LI GFC A + + A  
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALR 226

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F  M  +G   +VVT+N ++D  CK RK+D+   LL  M   G+ P      N+++Y  
Sbjct: 227 FFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEP------NLISYNV 280

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLC+ G++K    +   + + G   + VTYN  I   C +    +A  +  +M   G
Sbjct: 281 VINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG 340

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           ++P+ + +T+L+ S  +    ++  E L  M  R + P     + +VD
Sbjct: 341 LSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVD 388



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 121/263 (46%), Gaps = 45/263 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV-------------------- 51
           C PN VTYNT+IDG CK   +D   EL   M  + + PN+                    
Sbjct: 236 CLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEIS 295

Query: 52  ---------------VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                          VTYN+LI G+C   + ++A  +  EM+  GL   V+T+  ++  +
Sbjct: 296 FVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSM 355

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK   M+ AT  LD M   G+ P      N   Y  L+DG  + G +  A  + + +   
Sbjct: 356 CKAGNMNRATEFLDQMRVRGLCP------NERTYTTLVDGFSQKGYMNEAYRVLKEMIDN 409

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+VVTYN  I+  C   +M  A  +  DM+ KG+ P+ V ++T++  F R  +  + 
Sbjct: 410 GFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEA 469

Query: 217 IELLRSMDKRNVMP----YASIL 235
           + + R M  + + P    Y+S++
Sbjct: 470 LRVKRKMVAKGIKPDTITYSSLI 492



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 116/230 (50%), Gaps = 11/230 (4%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NE 69
           +C   +  ++ ++    +   +DKA  +    +     P V++YN+++     +    + 
Sbjct: 129 LCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISF 188

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           AE +F EM+   +  +V T+N+++   C    +D A R  D M + G  P      N+V 
Sbjct: 189 AENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLP------NVVT 242

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LIDG CK+ K+ +  EL +S+   GL PN+++YN+ I+ LC + +M +   +  +M 
Sbjct: 243 YNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMN 302

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASIL 235
            +G + + V + TL+  + ++    + +    E+LR     +V+ Y S++
Sbjct: 303 KRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLI 352



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 13/223 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+T+TY+++I G C++    +A +LF +M    + P+  TY +LI+ +C   D  +A  
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQ 541

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR-LLDLMIQGGVRPDAFCE------- 124
           L  EM+++G+  DVVT++V+++ L K  +  EA R LL L  +  V  D           
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601

Query: 125 -INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            I   +   LI G C  G +  A ++ +S+      P+   YN+ IH  C    + KA+ 
Sbjct: 602 NIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYS 661

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRK---NETSKVIE-LLRS 222
           L+ +M   G   + V    L+ +  ++   NE + VI  +LRS
Sbjct: 662 LYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRS 704



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 23/205 (11%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN----------- 55
           E GV+  P+ VTY+ +I+GL K+    +AK L L++  E   P+ VTY+           
Sbjct: 548 EKGVL--PDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEF 605

Query: 56  ----SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL 111
               SLI GFC      EA+ +F  M+++  + D   +NV++   C+   + +A  L   
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKE 665

Query: 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           M++ G        ++ V    L+  L K GK+     +  ++ R+  +       + +  
Sbjct: 666 MVKSGFL------LHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEI 719

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPN 196
              +  MD   D+  +M   G  PN
Sbjct: 720 NHREGNMDVVLDVLAEMAKDGFLPN 744


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN +++  C  G  DKA+ L  +M+   +NP+  +YN L+ G C A+  ++A 
Sbjct: 401 CEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAF 460

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               + M+ G   D+V+ N+++D  C+ +K++ A  L   M   G++ DA      V YG
Sbjct: 461 AFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADA------VTYG 514

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GL  IG    A EL   +    ++PNV  YNI +H LC       A  +F  M  K
Sbjct: 515 ILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQK 574

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V+P+ V F TL+    + +   + ++L + M  + V P
Sbjct: 575 EVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEP 613



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V    +I GLCK   VD+A EL  +M   +I  NV  YN+LI GF  A    +A Y
Sbjct: 332 KPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKA-Y 390

Query: 73  LFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +  M R G + DVVT+N++++  C     D+A  L+  M   GV PD +      +Y 
Sbjct: 391 KTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRY------SYN 444

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK  +L  A          G   ++V+ NI I A C  ++++ A +LF +M  K
Sbjct: 445 ILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYK 504

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+  + V +  L+        ++   EL   M    ++P  ++ +I++  L K
Sbjct: 505 GIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCK 557



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 20/244 (8%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG  C P+    N  +  LC    +  A ++  +M  +   P+VVTY +++   C    
Sbjct: 258 KFG--CFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRR 315

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE----ATRLLDLMIQGGVRPDAF 122
            +EA  L+ EM+ RGL+ DVV    ++  LCKN+K+DE    A+R+L L IQ        
Sbjct: 316 FSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQ-------- 367

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
             +N+  Y  LI G  + G ++ A +    + R G  P+VVTYNI ++  C+    DKA 
Sbjct: 368 --LNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAE 425

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS--IIVD 240
           +L   ME+ GV P+   +  L+    + ++  K    +   D   V  +  I+S  I++D
Sbjct: 426 NLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVS--DHMEVGGFCDIVSCNILID 483

Query: 241 LLVK 244
              +
Sbjct: 484 AFCR 487



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY+  I  LC+   ++  +EL   M      P+    N  +H  C  N   +A  +  +M
Sbjct: 232 TYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKM 291

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             +G   DVVT+  ++  LC +R+  EA  L + M++ G++PD      +VA G LI GL
Sbjct: 292 TMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPD------VVACGALIFGL 345

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK  K+  A EL+  +    +  NV  YN  I        ++KA+     M+  G  P+ 
Sbjct: 346 CKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDV 405

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V +  L+  +     T K   L+R M+   V P
Sbjct: 406 VTYNILLNHYCSIGMTDKAENLIRKMEMSGVNP 438



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 6/147 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + VTY  +I+GL   G+ + A+ELF QM +  I PNV  YN ++H  C       A+ 
Sbjct: 507 QADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQK 566

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M  + +  D VTFN ++  L K+ +  EA  L   M   GV PD       + +  
Sbjct: 567 IFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDN------LTFRY 620

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLM 159
           +I GL   GK   A E+ + +   G++
Sbjct: 621 IISGLLDEGKATLAYEIWEYMMENGII 647



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 6/211 (2%)

Query: 36  KELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95
            E   +++ + +  +   Y  L+ G+  A   +     F EM+  G +   V +N  +  
Sbjct: 145 SEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGV 204

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           + KN   D   +  ++ +  G     FC +    Y   I  LC+  +++   EL   + +
Sbjct: 205 MIKNCCFDLVEKYYNMALAKG-----FC-LTPFTYSRWITALCQSNRIELVEELLTDMDK 258

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G  P+    NI +H LC   ++  A  +   M +KG  P+ V +TT++         S+
Sbjct: 259 FGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSE 318

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            + L   M +R + P       ++  L KN+
Sbjct: 319 AVGLWEEMVRRGLKPDVVACGALIFGLCKNQ 349


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN +++  C  G  DKA+ L  +M+   +NP+  +YN L+ G C A+  ++A 
Sbjct: 401 CEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAF 460

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               + M+ G   D+V+ N+++D  C+ +K++ A  L   M   G++ DA      V YG
Sbjct: 461 AFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADA------VTYG 514

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GL  IG    A EL   +    ++PNV  YNI +H LC       A  +F  M  K
Sbjct: 515 ILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQK 574

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V+P+ V F TL+    + +   + ++L + M  + V P
Sbjct: 575 EVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEP 613



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V    +I GLCK   VD+A EL  +M   +I  NV  YN+LI GF  A    +A Y
Sbjct: 332 KPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKA-Y 390

Query: 73  LFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             +  M R G + DVVT+N++++  C     D+A  L+  M   GV PD +      +Y 
Sbjct: 391 KTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRY------SYN 444

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK  +L  A          G   ++V+ NI I A C  ++++ A +LF +M  K
Sbjct: 445 ILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYK 504

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+  + V +  L+        ++   EL   M    ++P  ++ +I++  L K
Sbjct: 505 GIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCK 557



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 20/244 (8%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG  C P+    N  +  LC    +  A ++  +M  +   P+VVTY +++   C    
Sbjct: 258 KFG--CFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRR 315

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE----ATRLLDLMIQGGVRPDAF 122
            +EA  L+ EM+ RGL+ DVV    ++  LCKN+K+DE    A+R+L L IQ        
Sbjct: 316 FSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQ-------- 367

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
             +N+  Y  LI G  + G ++ A +    + R G  P+VVTYNI ++  C+    DKA 
Sbjct: 368 --LNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAE 425

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS--IIVD 240
           +L   ME+ GV P+   +  L+    + ++  K    +   D   V  +  I+S  I++D
Sbjct: 426 NLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVS--DHMEVGGFCDIVSCNILID 483

Query: 241 LLVK 244
              +
Sbjct: 484 AFCR 487



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY+  I  LC+   ++  +EL   M      P+    N  +H  C  N   +A  +  +M
Sbjct: 232 TYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKM 291

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             +G   DVVT+  ++  LC +R+  EA  L + M++ G++PD      +VA G LI GL
Sbjct: 292 TMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPD------VVACGALIFGL 345

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK  K+  A EL+  +    +  NV  YN  I        ++KA+     M+  G  P+ 
Sbjct: 346 CKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDV 405

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V +  L+  +     T K   L+R M+   V P
Sbjct: 406 VTYNILLNHYCSIGMTDKAENLIRKMEMSGVNP 438



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 6/147 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + VTY  +I+GL   G+ + A+ELF QM +  I PNV  YN ++H  C       A+ 
Sbjct: 507 QADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQK 566

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M  + +  D VTFN ++  L K+ +  EA  L   M   GV PD       + +  
Sbjct: 567 IFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDN------LTFRY 620

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLM 159
           +I GL   GK   A E+ + +   G++
Sbjct: 621 IISGLLDEGKATLAYEIWEYMMENGII 647



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 10/220 (4%)

Query: 31  FVDKAKELFLQ----MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV 86
           FVD    L L+    ++ + +  +   Y  L+ G+  A   +     F EM+  G +   
Sbjct: 136 FVDDNFALLLEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFG 195

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           V +N  +  + KN   D   +  ++ +  G     FC +    Y   I  LC+  +++  
Sbjct: 196 VDYNRFIGVMIKNCCFDLVEKYYNMALAKG-----FC-LTPFTYSRWITALCQSNRIELV 249

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
            EL   + + G  P+    NI +H LC   ++  A  +   M +KG  P+ V +TT++  
Sbjct: 250 EELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSC 309

Query: 207 FIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
                  S+ + L   M +R + P       ++  L KN+
Sbjct: 310 LCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQ 349


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  +P+  TYNT++DG CK G +D A  LF  M  + +    V+YN ++HG   A     
Sbjct: 569 VGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIV 628

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ +F EM++ G+   + T+  ++  LC+N   DEA  LL+ +    V+ D      I+ 
Sbjct: 629 AKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFD------ILT 682

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  +I  + K+G+ + A+EL  +++  GL+P ++TY + I  L  +E  + A +LF  ME
Sbjct: 683 FNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSME 742

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
                P+  I   ++   + K E +K    L  +DK+ ++P A+  S+++ L   N
Sbjct: 743 KSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVN 798



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+++I+GLCK   +DKA+ +  QM    + PN +TYN LIHG+  +    E+  +
Sbjct: 257 PNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRV 316

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM    L  DV   N  M  LCK+ ++ EA  + D M+  G +PD      +++YG L
Sbjct: 317 FKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPD------VISYGAL 370

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G +     L   +   G++P+   +N  I+A      MDK+  +F DM  +GV
Sbjct: 371 LHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGV 430

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+ + F+T++ +F R       +E    M    V P  ++ S ++
Sbjct: 431 NPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLI 476



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 129/279 (46%), Gaps = 41/279 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYN +I+   +    D    +F ++    + P+V +YN+LI GF    + ++A  L
Sbjct: 187 PTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDL 246

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M ++G+  +VVT++ +++ LCK ++MD+A R+L  M+  GVRP      N + Y CL
Sbjct: 247 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRP------NNMTYNCL 300

Query: 134 IDG-----------------------------------LCKIGKLKNARELSQSLTRAGL 158
           I G                                   LCK G++K AR++  S+   G 
Sbjct: 301 IHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGP 360

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+V++Y   +H       +    +LF  M  +GV P+  +F TL+ ++ R     K + 
Sbjct: 361 KPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLL 420

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           +   M K+ V P     S ++    +     +++ +FN 
Sbjct: 421 MFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNH 459



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 7/220 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+   +NT+I+   + G +DK+  +F  M  + +NP+++T++++I  FC     +
Sbjct: 394 GVV--PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLD 451

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A   F  M+D G+  D   ++ ++   C  R + +A  L+  M+  G+ P       I 
Sbjct: 452 DAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPC-----IK 506

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  +I+ LCK G++   +++   +   G  PN++T+N  +   C    M +A  L   M
Sbjct: 507 FFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSM 566

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           E  GV P+   + TL+  + +       + L R M  + V
Sbjct: 567 ESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRV 606



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 41/229 (17%)

Query: 9   GVVCKPNTVTYNTIIDG-----------------------------------LCKEGFVD 33
           G   +PN +TYN +I G                                   LCK G + 
Sbjct: 287 GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIK 346

Query: 34  KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           +A+++F  M  +   P+V++Y +L+HG+  A      + LF  M+  G+  D   FN ++
Sbjct: 347 EARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLI 406

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
           +   +   MD++  + + M + GV PD      I+ +  +I   C++G+L +A E    +
Sbjct: 407 NAYARLGMMDKSLLMFEDMTKQGVNPD------IITFSTVISAFCRLGRLDDAMEKFNHM 460

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
              G+ P+   Y+  I   CN   + KA +L  DM  KG+ P C+ F T
Sbjct: 461 IDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFT 509



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 7/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ ++Y  ++ G    G +     LF  M  E + P+   +N+LI+ +      +++  
Sbjct: 361 KPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLL 420

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M  +G+  D++TF+ ++   C+  ++D+A    + MI  GV PD         Y C
Sbjct: 421 MFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDT------AVYSC 474

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT-IHALCNDEQMDKAHDLFLDMEVK 191
           LI G C    L  A+EL   +   G+ P  + +  + I+ LC + ++ +  D+   +   
Sbjct: 475 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT 534

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  PN + F +L+  +       + + LL SM+   V P     + +VD   K+
Sbjct: 535 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKH 588



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K + +T+N +I  + K G   +AKELF  +    + P ++TY  +I         
Sbjct: 672 FSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESF 731

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            +A+ LF  M       D    N I+  L    ++ +A   L  + + G+ P+A
Sbjct: 732 EDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEA 785


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 130/254 (51%), Gaps = 8/254 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +  GV+   N VT +T +D  CKEG V +A +LF QM+   + PN  TY SL+ G C A 
Sbjct: 296 KRLGVMA--NVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 353

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++A  L  EM+ +GL  +VVT+ V++D LCK  K+  A  +L LM + GV+       
Sbjct: 354 RLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKA------ 407

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N + Y  LI G       + A +L   +   G+  +V  Y   I  LC  +++D+A  L 
Sbjct: 408 NELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLL 467

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M+  G+ PN VI+TT+M +F +  + S+ + LL  +    + P       ++D L K 
Sbjct: 468 HKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKA 527

Query: 246 EISLNSIPQFNRQK 259
                +I  F++ +
Sbjct: 528 GSIYEAISHFDKMR 541



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 136/276 (49%), Gaps = 36/276 (13%)

Query: 5   NREFGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL 57
           NR+ G+V +       PN  T+N +ID LCK+G + +A+ LF++MK    +P+VVTYNSL
Sbjct: 181 NRQGGLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSL 240

Query: 58  IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           I G+    +  E E L  EM   G  +DVVT+N +++   K   +++A      M + GV
Sbjct: 241 IDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGV 300

Query: 118 RP---------DAFCEINIV--------------------AYGCLIDGLCKIGKLKNARE 148
                      DAFC+  +V                     Y  L+DG CK G+L +A  
Sbjct: 301 MANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIV 360

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           L   +   GL+PNVVTY + +  LC + ++  A D+   ME  GV  N +++TTL+    
Sbjct: 361 LLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHF 420

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
               + + ++LL  M  + +    S+   ++  L K
Sbjct: 421 MNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCK 456



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 107/210 (50%), Gaps = 6/210 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++DGLCKEG V  A ++   M+   +  N + Y +LIHG     +   A  L
Sbjct: 372 PNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDL 431

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM ++G++ DV  +  ++  LCK +K+DEA  LL  M   G+RP      N V Y  +
Sbjct: 432 LNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRP------NTVIYTTI 485

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +D   K GK   A  L   +  +GL PNVVTY   I  LC    + +A   F  M   G+
Sbjct: 486 MDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGL 545

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            PN  ++TTL+  F +    SK + L+  M
Sbjct: 546 DPNVQVYTTLIDGFCKIGSLSKAVHLMNEM 575



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 6/177 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY  +IDGLCK G + +A   F +M++  ++PNV  Y +LI GFC     ++A +
Sbjct: 511 QPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVH 570

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+D+G+  D V +  ++D   K   +  A  L   MI+ G++ D +C      Y C
Sbjct: 571 LMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYC------YTC 624

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            I G C +  ++ AR +   +   G+ P+   YN  I        M++A  L  +ME
Sbjct: 625 FISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEME 681



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 6/195 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNTV Y TI+D   K G   +A  L  ++ D  + PNVVTY +LI G C A    EA  
Sbjct: 476 RPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAIS 535

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M + GL  +V  +  ++D  CK   + +A  L++ M+  G+  D       V Y  
Sbjct: 536 HFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDK------VVYTS 589

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  K G L+ A  L   +   GL  ++  Y   I   CN   M +A  +  +M   G
Sbjct: 590 LIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTG 649

Query: 193 VAPNCVIFTTLMPSF 207
           + P+   +  L+  +
Sbjct: 650 ITPDKTAYNCLIRKY 664



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N + Y T+I G       ++A +L  +MK++ +  +V  Y +LI G C     +EA+ 
Sbjct: 406 KANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKS 465

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M D GL+ + V +  IMD   K  K  EA  LL  +   G++P      N+V Y  
Sbjct: 466 LLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQP------NVVTYCA 519

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK G +  A      +   GL PNV  Y   I   C    + KA  L  +M  KG
Sbjct: 520 LIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKG 579

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           ++ + V++T+L+   +++ +      L   M
Sbjct: 580 MSLDKVVYTSLIDGHMKQGDLQGAFALKAKM 610



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT T N I+  L +       + LF  +      PNV T+N +I   C   +  EA  L
Sbjct: 166 PNTRTCNHILLRLARNRQGGLVRRLFEHLP----APNVFTFNIVIDFLCKQGELVEARAL 221

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+ M   G   DVVT+N ++D   K  +++E   L+  M + G      C  ++V Y  L
Sbjct: 222 FVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSG------CAADVVTYNAL 275

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+   K G ++ A      + R G+M NVVT +  + A C +  + +A  LF  M V+G+
Sbjct: 276 INCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGM 335

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN   +T+L+    +       I LL  M  + ++P     +++VD L K
Sbjct: 336 MPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCK 386



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 96/212 (45%), Gaps = 6/212 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y T+I GLCK   +D+AK L  +M D  + PN V Y +++  F  A   +EA  L  ++ 
Sbjct: 447 YGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIP 506

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
           D GLQ +VVT+  ++D LCK   + EA    D M + G+ P      N+  Y  LIDG C
Sbjct: 507 DSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDP------NVQVYTTLIDGFC 560

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           KIG L  A  L   +   G+  + V Y   I        +  A  L   M   G+  +  
Sbjct: 561 KIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLY 620

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +T  +  F   N   +   +L  M    + P
Sbjct: 621 CYTCFISGFCNMNMMQEARGVLSEMIGTGITP 652



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 10/172 (5%)

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           T N I+  L +NR+     RL + +      P+ F   NIV     ID LCK G+L  AR
Sbjct: 170 TCNHILLRLARNRQGGLVRRLFEHLPA----PNVF-TFNIV-----IDFLCKQGELVEAR 219

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
            L   +   G  P+VVTYN  I       ++++   L  +M   G A + V +  L+  F
Sbjct: 220 ALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCF 279

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            +     K       M +  VM     LS  VD   K  +   ++  F + +
Sbjct: 280 SKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMR 331


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 107/191 (56%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D  T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P++ TY + I+  C    + K   L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 412

Query: 194 APNCVIFTTLM 204
           AP+ V +  LM
Sbjct: 413 APSVVTYNVLM 423



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 139 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AHDL  +M +KG+ P+  
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 313 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 354



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD F       Y  
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF------TYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +    P
Sbjct: 377 LKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAP 414



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+  TY   I   C +  +D A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKK 394



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + ++++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 123 FYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 177 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274



 Score = 43.5 bits (101), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 12/204 (5%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRK-MDEATRLLD 110
           +Y ++IH  C     +EA+ L   ++ R G  S    F  I++     R  +   + L+ 
Sbjct: 15  SYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 111 LMIQGGVRPDAF-C-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMP 160
             ++ G   DA  C       ++ +    C  +++ L K+   K      + +   G   
Sbjct: 75  AYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDILECGYPA 134

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++  +NI +H  C D  +  A  +F  +   G+ P+ V + TLM  +IR  +  +   L 
Sbjct: 135 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 194

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
            +M    V P     S++++ L K
Sbjct: 195 SAMLASGVQPDVYTYSVLINGLCK 218



 Score = 43.5 bits (101), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+     P+VVTYN L++G
Sbjct: 378 KPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   +N ++   CKEG +  A+ +F  +   ++ P+VV++N+L++G+    D +E   L
Sbjct: 134 PSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRL 193

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G+Q DV T++V+++ LCK  KMDEA  +L+ M+  G+ P      N V +  L
Sbjct: 194 KSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVP------NGVTFTTL 247

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK GK+  A E+ + +   G +P+++TYN  I+ LC    + +A DL  +M +KG+
Sbjct: 248 IDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGL 307

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            P+ + +TTL+    ++ +     EL + M + N+    + Y +++S
Sbjct: 308 KPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALIS 354



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D+A E+  +M D  + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ +G   D++T+N ++  LC+   + +A  L++ MI  G++PD       + Y  
Sbjct: 263 IYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+   EL + + R  +  + VTY   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T +M  F +  +     +LLR M +   +P
Sbjct: 377 LKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVP 414



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +   P+++TYN+LI+G C   D  +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +GL+ D +T+  ++D  CK   ++    L   MI+  +R D       V Y  L
Sbjct: 299 VEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDE------VTYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + ++  C    +  A  L  +M+  G 
Sbjct: 353 ISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGP 412

Query: 194 APNCV 198
            P  V
Sbjct: 413 VPGVV 417



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  +EA  
Sbjct: 168 RPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+D GL  + VTF  ++D  CKN K+D A  +   M+  G  PD      ++ Y  
Sbjct: 228 MLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+ G L  AR+L + +   GL P+ +TY   I   C +  ++   +L   M  + 
Sbjct: 282 LIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIREN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    R+       ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKT 394



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 84/158 (53%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G    +  FN++M   CK  +M  A  + D + +  +RP      ++V++  
Sbjct: 123 FYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++   G+ P+V TY++ I+ LC + +MD+A+++  +M   G
Sbjct: 177 LMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +  +    +E+ + M  +  +P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLP 274



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY  +I GLC+EG    A+++  +M    + P+  TY  +++ FC   D   A  L 
Sbjct: 345 DEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLL 404

Query: 75  IEMMDRGLQSDVVT 88
            EM   G    VVT
Sbjct: 405 REMQRNGPVPGVVT 418



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 16/206 (7%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDL 111
           +Y ++IH  C      EA+ L   ++ R G  S    F  I++   K  ++ +      L
Sbjct: 15  SYCTMIHFLCTHQMLVEAKSLIRVVVSRKGKDSTSAVFAAILE--TKGTQISDLYVFSGL 72

Query: 112 MI----QGGVRPDAFC-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGL 158
           M+     G VR    C       +I +    C  +++ L K+   +      + +   G 
Sbjct: 73  MLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFYKEILECGY 132

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P++  +NI +H  C + +M  A  +F  +    + P+ V F TLM  +IR  +  +   
Sbjct: 133 PPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           L  +M    V P     S++++ L K
Sbjct: 193 LKSAMHATGVQPDVYTYSVLINGLCK 218


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 7/245 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD-ENINPNVVTYNSLIHGFCYANDGNEA 70
           CKPN VTYNT+I+G CK+G ++ A ++  QM + E+  P+ VTY +LI G+C   +  EA
Sbjct: 281 CKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEA 340

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                EM+ R  + +V+T+N I+  LC N  +DEA R++  M   G++       N+  +
Sbjct: 341 MKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKD------NVATH 394

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++ GLC +GKL +A    + +   G+  +   Y + ++  C   + D A  L  +M+ 
Sbjct: 395 TSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKS 454

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
           +G+ P+   F  +    +   +T K   +LR M +    P     S ++D L K +  ++
Sbjct: 455 RGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMH 514

Query: 251 SIPQF 255
            + +F
Sbjct: 515 EVEEF 519



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+TVTY T+IDG CK G +++A +   +M   N  PNV+TYN++I+G C   + +EA+
Sbjct: 317 CMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAK 376

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M   GL+ +V T   I+  LC   K+D+A R L  M+  G+  DA       AYG
Sbjct: 377 RMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADA------KAYG 430

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +++  CKIGK  +A  L + +   G+ P+V ++N     L    + DKA  +   M+  
Sbjct: 431 VVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQL 490

Query: 192 GVAPNCVIFTTLMPSFIR-KNETSKVIELLRSMDKRNVMPYASILSIIV 239
           G  PN + ++T++    + K    +V E +  M +      AS+ S +V
Sbjct: 491 GCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLV 539



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 9/188 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +YN I+    K   +  A+ +F Q+  E +  P+V TY ++I G+C       A+ +F E
Sbjct: 219 SYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDE 278

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   G + ++VT+N +++  CK   M+ A +++D M +        C  + V Y  LIDG
Sbjct: 279 M---GCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTE-----TEDCMPDTVTYTTLIDG 330

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK G+L+ A +  + +      PNV+TYN  I+ LC +  +D+A  +   M + G+  N
Sbjct: 331 YCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDN 390

Query: 197 CVIFTTLM 204
               T+++
Sbjct: 391 VATHTSIL 398



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 7/184 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  + +   Y  +++  CK G  D A  L  +MK   INP+V ++N++      +   +
Sbjct: 419 GLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTD 478

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR-KMDEATRLLDLMIQGGVRPDAFCEINI 127
           +A  +  +M   G   + ++++ ++D LCK + +M E    +D M + G   DA      
Sbjct: 479 KAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDA------ 532

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  L+ G C+ G    A  L   +   G + N+ ++   +  L   E+  +    F +
Sbjct: 533 SMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKEKAFEVEKFFEE 592

Query: 188 MEVK 191
           M  +
Sbjct: 593 MSRR 596


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N + +NT+IDG C++G VD A ++   M+   I  +V TYN+L  G C  N   EA+ L 
Sbjct: 306 NQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLL 365

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+++G+  + VT+  ++   CK   M EA RL   M   G  P      ++V Y  ++
Sbjct: 366 HIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMP------SVVTYNVMM 419

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G ++ A    + + + GL+P+V TY   +H  C + ++D A  LF +M+ +G  
Sbjct: 420 DGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTE 479

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           PN V +T L+    ++  + +  +L   M K  + P  S+ S +V  L
Sbjct: 480 PNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSL 527



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 111/221 (50%), Gaps = 10/221 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y  +I+  C+ G V +A E+F +     I PN  TY  LI+GFC       AE L  +M 
Sbjct: 240 YTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQ 299

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
            RG+  + + FN ++D  C+   +D A ++   M + G+      E+++  Y  L  GLC
Sbjct: 300 GRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGI------ELDVYTYNTLACGLC 353

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           ++ ++  A+ L   +   G+ PN VTY   I   C +  M +A  LF +M  KG  P+ V
Sbjct: 354 RVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVV 413

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            +  +M  +I+K    +     + M+K+ ++P    YAS++
Sbjct: 414 TYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLV 454



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 6/195 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TYNT+  GLC+   + +AK L   M ++ + PN VTY +LI   C   D  EA  LF EM
Sbjct: 344 TYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREM 403

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             +G    VVT+NV+MD   K   + EA R    M + G+ PD +       Y  L+ G 
Sbjct: 404 AGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVY------TYASLVHGH 457

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  GK+  A +L + +   G  PNVV Y   I  L  + + ++A  L+ DM   G+ P+ 
Sbjct: 458 CVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDD 517

Query: 198 VIFTTLMPSFIRKNE 212
            +++ L+ S    N 
Sbjct: 518 SLYSALVGSLHTDNR 532



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+I   CKEG + +A+ LF +M  +   P+VVTYN ++ G+       EAE  
Sbjct: 375 PNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERF 434

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL  DV T+  ++   C N K+D A +L + M   G  P      N+VAY  L
Sbjct: 435 RKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEP------NVVAYTAL 488

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           I GL K G+ + A +L   + +AGL P+   Y+  + +L  D + D  H
Sbjct: 489 ISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTDNRKDIHH 537



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 121/241 (50%), Gaps = 7/241 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY  ++D L   G + K + +  +MK +N+  +V  Y ++I+ +C A +   A  +F E 
Sbjct: 204 TYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDEC 263

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +  G++ +  T+ V+++  CK  +M+ A  LL  M   GV        N + +  +IDG 
Sbjct: 264 VGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGH------NQIIFNTMIDGY 317

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C+ G + NA ++  ++ + G+  +V TYN     LC   +M +A  L   M  KGV PN 
Sbjct: 318 CRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNY 377

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           V +TTL+    ++ +  +   L R M  +  MP     ++++D  +K   S+    +F +
Sbjct: 378 VTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKG-SIREAERFRK 436

Query: 258 Q 258
           +
Sbjct: 437 E 437



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 9/218 (4%)

Query: 14  PNTVT---YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           P +V+    + ++DG CK G VD A+ L  +M    +  N + YNSL+  +    D    
Sbjct: 127 PGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARV 186

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + L   M + G+++ V T+ +++D L     + +   ++D M    V  D +       Y
Sbjct: 187 QELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYL------Y 240

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I+  C+ G ++ A E+       G+ PN  TY + I+  C   QM+ A  L  DM+ 
Sbjct: 241 TAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQG 300

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           +GV  N +IF T++  + R+      +++  +M+K  +
Sbjct: 301 RGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGI 338



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 141 GKLKNARELSQSLTRA-GLMPNVVT---YNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           G+L +A  +   LTRA G  P  V+    ++ +   C   ++D A  L  +M   GV  N
Sbjct: 110 GQLADAAAI---LTRALGSCPGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLN 166

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            + + +L+  ++R+ + ++V ELL  M+   +       +I+VD L
Sbjct: 167 ALCYNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSL 212


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y++II  LCK   +DKA E+  +M    + PN  TY SL+HGFC +    EA   
Sbjct: 231 PNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKF 290

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ +VVT++  MD LCKN +  EA ++ D M++ G++PD      I  Y  L
Sbjct: 291 LEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPD------ITTYSSL 344

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + ++ + P+   +N  I+A     ++D+A  +F  M  +G+
Sbjct: 345 LHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGL 404

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PNCV ++TL+  + +       + L + M    V P
Sbjct: 405 KPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSP 441



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 31/276 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNE 69
           C PN  ++  I+ GLC E    +A EL   M D+     PNVV+Y+++I G     D ++
Sbjct: 157 CVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDK 216

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--------- 120
           A   + EM+DR +  +VV ++ I+  LCK + MD+A  + D M++ GV P+         
Sbjct: 217 AYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVH 276

Query: 121 AFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
            FC                    E N+V Y   +D LCK G+   AR++  S+ + GL P
Sbjct: 277 GFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKP 336

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++ TY+  +H    +  + + H LF  M    + P+  +F TL+ +  ++ +  + + + 
Sbjct: 337 DITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVF 396

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
             M ++ + P     S +++   K     N++  F 
Sbjct: 397 SKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQ 432



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 6/180 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY++ +D LCK G   +A+++F  M    + P++ TY+SL+HG+       E   
Sbjct: 300 EPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHG 359

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M+   +Q D   FN ++    K  K+DEA  +   M Q G++P      N V Y  
Sbjct: 360 LFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKP------NCVTYST 413

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CKI +++NA  L Q +   G+ PN +TYNI +  L    +   A + ++ +   G
Sbjct: 414 LINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSG 473



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 105/241 (43%), Gaps = 5/241 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R    +  P   TY  +I   C  G +D        +  +      + +N L+ G C   
Sbjct: 80  RAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADK 139

Query: 66  DGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
             ++A + +   M +     +V +  +I+  LC   +  EA  LL +M   G      C 
Sbjct: 140 RTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDG----GGCL 195

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V+Y  +IDGL K G    A    + +    ++PNVV Y+  I ALC  + MDKA ++
Sbjct: 196 PNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEV 255

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M   GV PNC  +T+L+  F    + ++ I+ L  M    V P     S  +D L K
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK 315

Query: 245 N 245
           N
Sbjct: 316 N 316



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           V T+ +++   C   ++D     L  +++ G R      +  + +  L+ GLC   +  +
Sbjct: 90  VHTYGILIGCCCSAGRLDLGFAALGHVVKKGFR------VEPIIFNPLLKGLCADKRTDD 143

Query: 146 ARELS-QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM--EVKGVAPNCVIFTT 202
           A ++  + +T    +PNV ++ I +  LC++ +  +A +L   M  +  G  PN V ++T
Sbjct: 144 AMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYST 203

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           ++   ++  +  K     R M  R ++P   I S I+  L K +
Sbjct: 204 VIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQ 247


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 130/247 (52%), Gaps = 11/247 (4%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
            G  EFG    P+ V++N ++ G CK G VD AK  F  M    + P+V +YN L+HG C
Sbjct: 261 TGGEEFG----PSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLC 316

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
            A    EA     +M + G++ D+VT+N++ +       +  A +++  M+  G+ PD  
Sbjct: 317 VAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPD-- 374

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
               +V Y  LI G C++G ++ + +L + +   GL  ++VTY + + +LC   ++D+A 
Sbjct: 375 ----LVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAV 430

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS-IIVDL 241
            L  +MEV G+ P+ + ++ L+    ++    + IEL   M  + + P + + S II  L
Sbjct: 431 ILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGL 490

Query: 242 LVKNEIS 248
             K  IS
Sbjct: 491 FEKGAIS 497



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 132/287 (45%), Gaps = 43/287 (14%)

Query: 1   MANGNREFGVVC--------------KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN 46
           +ANG R  G++                P+ VTY  +I G C+ G ++++ +L  +M  + 
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405

Query: 47  INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           +  ++VTY  L+   C +   +EA  L  EM   GL+ D++T++V++  LCK   ++EA 
Sbjct: 406 LKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAI 465

Query: 107 RLLDLMIQGGVRPDAF-CEI----------------------------NIVAYGCLIDGL 137
            L + M    + P++F C                               I+ Y  +IDG 
Sbjct: 466 ELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGY 525

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
            K+G +  A    + +   G+ P +VT+N  I+  C   ++ +A  L   ++V G+ P  
Sbjct: 526 AKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTS 585

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V +TTLM  +  + +   + ++L  M+ + + P     +++V  L K
Sbjct: 586 VTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCK 632



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP  +TY  ++ GLCKEG + ++ +L   M    + P+ +TYN++I  FC A+D  +A  
Sbjct: 617 KPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQ 676

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+   LQ   VT+NV+++ LC    + +A RLL  +    +R      +  VAY  
Sbjct: 677 LHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIR------LTKVAYTT 730

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I   C  G ++NA      +   G   ++  Y+  I+ LC    +  A   F  M   G
Sbjct: 731 IIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHG 790

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+  I   ++ +F R  + + V E+   M K  ++P
Sbjct: 791 IPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 107/215 (49%), Gaps = 6/215 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P  VT+N++I G CK+G + +A +L   +K   + P  VTY +L++G+C   D +    
Sbjct: 547 SPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFD 606

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM  + ++   +T+ V++  LCK  ++ E+ +LL  M   G+ PD       + Y  
Sbjct: 607 MLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQ------ITYNT 660

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I   CK   L+ A +L   + +  L P+ VTYN+ I+ LC    +  A  L + ++ + 
Sbjct: 661 VIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQS 720

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           +    V +TT++ +   K +    +     M +R 
Sbjct: 721 IRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERG 755



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 120/253 (47%), Gaps = 41/253 (16%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN + +G    G +  A ++  +M    +NP++VTY  LI G C   +  E+  
Sbjct: 337 EPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFK 396

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ +GL+  +VT+ V++  LCK+ ++DEA  LL  M   G++PD      ++ Y  
Sbjct: 397 LKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPD------LLTYSV 450

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPN------------------------------- 161
           LI GLCK G ++ A EL + +    + PN                               
Sbjct: 451 LIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSD 510

Query: 162 ----VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
               ++ YNI I        + +A   +  +  KG++P  V F +L+  F +K + ++ +
Sbjct: 511 VAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAV 570

Query: 218 ELLRSMDKRNVMP 230
           +LL ++    ++P
Sbjct: 571 KLLDTIKVHGLVP 583



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 9/193 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V ++ +     +   V  A  +  +MK  N+  ++ TYNSL++   + +   +   ++
Sbjct: 167 NNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWD---VY 223

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            E+   G+  +  T  +++D LC+  ++ +A   L         P      ++V++  L+
Sbjct: 224 NEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGP------SVVSFNALM 277

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G CK+G +  A+     + + GL+P+V +YNI +H LC    M++A +   DME  GV 
Sbjct: 278 SGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVE 337

Query: 195 PNCVIFTTLMPSF 207
           P+ V +  L   F
Sbjct: 338 PDIVTYNILANGF 350



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 13/226 (5%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TYN+++  L      D   +++ ++K   +  N  T   LI G C  +   +A    
Sbjct: 202 SIATYNSLLYNL---RHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFL 258

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            E         VV+FN +M   CK   +D A     +MI+ G+ PD +      +Y  L+
Sbjct: 259 RETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVY------SYNILL 312

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLC  G ++ A E +  +   G+ P++VTYNI  +       +  A  +   M + G+ 
Sbjct: 313 HGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLN 372

Query: 195 PNCVIFTTLMPSFIRKN---ETSKVIELLRSMD-KRNVMPYASILS 236
           P+ V +T L+    +     E+ K+ E + S   K +++ Y  +LS
Sbjct: 373 PDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLS 418


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  +P+  TYNT++DG CK G +D A  LF  M  + +    V+YN ++HG   A     
Sbjct: 498 VGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIV 557

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ +F EM++ G+   + T+  ++  LC+N   DEA  LL+ +    V+ D      I+ 
Sbjct: 558 AKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFD------ILT 611

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  +I  + K+G+ + A+EL  +++  GL+P ++TY + I  L  +E  + A +LF  ME
Sbjct: 612 FNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSME 671

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
                P+  I   ++   + K E +K    L  +DK+ ++P A+  S+++ L   N
Sbjct: 672 KSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVN 727



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+++I+GLCK   +DKA+ +  QM    + PN +TYN LIHG+  +    E+  +
Sbjct: 186 PNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRV 245

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM    L  DV   N  M  LCK+ ++ EA  + D M+  G +PD      +++YG L
Sbjct: 246 FKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPD------VISYGAL 299

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G +     L   +   G++P+   +N  I+A      MDK+  +F DM  +GV
Sbjct: 300 LHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGV 359

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+ + F+T++ +F R       +E    M    V P  ++ S ++
Sbjct: 360 NPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLI 405



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 129/278 (46%), Gaps = 41/278 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYN +I+   +    D    +F ++    + P+V +YN+LI GF    + ++A  L
Sbjct: 116 PTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDL 175

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M ++G+  +VVT++ +++ LCK ++MD+A R+L  M+  GVRP      N + Y CL
Sbjct: 176 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRP------NNMTYNCL 229

Query: 134 IDG-----------------------------------LCKIGKLKNARELSQSLTRAGL 158
           I G                                   LCK G++K AR++  S+   G 
Sbjct: 230 IHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGP 289

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+V++Y   +H       +    +LF  M  +GV P+  +F TL+ ++ R     K + 
Sbjct: 290 KPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLL 349

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           +   M K+ V P     S ++    +     +++ +FN
Sbjct: 350 MFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFN 387



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 7/220 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+   +NT+I+   + G +DK+  +F  M  + +NP+++T++++I  FC     +
Sbjct: 323 GVV--PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLD 380

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A   F  M+D G+  D   ++ ++   C  R + +A  L+  M+  G+ P       I 
Sbjct: 381 DAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPC-----IK 435

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  +I+ LCK G++   +++   +   G  PN++T+N  +   C    M +A  L   M
Sbjct: 436 FFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSM 495

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           E  GV P+   + TL+  + +       + L R M  + V
Sbjct: 496 ESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRV 535



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 41/229 (17%)

Query: 9   GVVCKPNTVTYNTIIDG-----------------------------------LCKEGFVD 33
           G   +PN +TYN +I G                                   LCK G + 
Sbjct: 216 GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIK 275

Query: 34  KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           +A+++F  M  +   P+V++Y +L+HG+  A      + LF  M+  G+  D   FN ++
Sbjct: 276 EARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLI 335

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
           +   +   MD++  + + M + GV PD      I+ +  +I   C++G+L +A E    +
Sbjct: 336 NAYARLGMMDKSLLMFEDMTKQGVNPD------IITFSTVISAFCRLGRLDDAMEKFNHM 389

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
              G+ P+   Y+  I   CN   + KA +L  DM  KG+ P C+ F T
Sbjct: 390 IDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFT 438



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 7/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ ++Y  ++ G    G +     LF  M  E + P+   +N+LI+ +      +++  
Sbjct: 290 KPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLL 349

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M  +G+  D++TF+ ++   C+  ++D+A    + MI  GV PD         Y C
Sbjct: 350 MFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDT------AVYSC 403

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT-IHALCNDEQMDKAHDLFLDMEVK 191
           LI G C    L  A+EL   +   G+ P  + +  + I+ LC + ++ +  D+   +   
Sbjct: 404 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT 463

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  PN + F +L+  +       + + LL SM+   V P     + +VD   K+
Sbjct: 464 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKH 517



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K + +T+N +I  + K G   +AKELF  +    + P ++TY  +I         
Sbjct: 601 FSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESF 660

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            +A+ LF  M       D    N I+  L    ++ +A   L  + + G+ P+A
Sbjct: 661 EDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEA 714


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   YN +IDG C  G ++ A ++F  M+ +   PNV TY  LI GFC +     A  L
Sbjct: 212 PNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVL 271

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGC 132
           +  M++ GL  +VVT+  ++   C    ++ A RLL  M   G+ P+ + C +       
Sbjct: 272 YSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLV------- 324

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK G+++ A++   SL + G+  N V Y   I ALC   + D AH+L   +  +G
Sbjct: 325 LIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEG 384

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             P+  ++++L+    R+N+  + I LL  M +  V   A   +I++D
Sbjct: 385 FVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILID 432



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 8/209 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY  +I G CK G V++A  L+ +M +  + PNVVTY +LI G C       A 
Sbjct: 245 CLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAF 304

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M   GL  +  T  V++D LCK+ +++EA + L  ++Q G++      +N V Y 
Sbjct: 305 RLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIK------VNQVIYT 358

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +ID LCK GK   A  L Q +   G +P+   Y+  I  LC + ++ +A  L  DM   
Sbjct: 359 SMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIES 418

Query: 192 GVAPNCVIFTTLMPSFIR--KNETSKVIE 218
           GV  N V FT L+   +R  ++++ K+I 
Sbjct: 419 GVQANAVPFTILIDKHLREFRSDSPKMIS 447



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 6/245 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P++  Y+ ++ GLC  G   +A  L      +   PNV  YN+LI G+C   D   A 
Sbjct: 175 CAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAI 234

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F  M  +G   +V T+  ++   CK+ K++ A  L   MI+ G+ P      N+V Y 
Sbjct: 235 DIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAP------NVVTYT 288

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C  G L++A  L  S+   GL PN  T  + I ALC   ++++A      +  K
Sbjct: 289 TLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQK 348

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+  N VI+T+++ +  +  +      L++ +     +P A + S ++D L +    L +
Sbjct: 349 GIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEA 408

Query: 252 IPQFN 256
           I   N
Sbjct: 409 ISLLN 413



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C     TY  ++ GLC  G V +A  +F  M  +   P+   Y+ ++HG C A    EA 
Sbjct: 140 CARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAV 199

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  + M +G   +V  +N ++D  C    ++ A  +   M   G  P      N+  Y 
Sbjct: 200 ALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLP------NVRTYT 253

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G CK GK++ A  L   +  AGL PNVVTY   I   C++  ++ A  L   ME  
Sbjct: 254 QLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEAC 313

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+APN      L+ +  +     +  + L S+ ++ +     I + ++D L K+
Sbjct: 314 GLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKS 367



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++  Y + + G C+ G    A  LFL M          TY +L+ G C A    EA  +
Sbjct: 107 PDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAV 166

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G   D   +++++  LC   +  EA  LL   +  G  P      N+  Y  L
Sbjct: 167 FAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVP------NVAVYNAL 220

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG C  G L+ A ++ + +   G +PNV TY   I   C   ++++A  L+  M   G+
Sbjct: 221 IDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGL 280

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           APN V +TTL+     +        LL SM+   + P      +++D L K+
Sbjct: 281 APNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKH 332



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V Y ++ID LCK G  D A  L  ++  E   P+   Y+SLI G C  N   EA  
Sbjct: 351 KVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAIS 410

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++ G+Q++ V F +++D+  +  + D    + D M   GV+PD      +V Y  
Sbjct: 411 LLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPD------VVTYTV 464

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I   C+ G++++A  +   +   G+ PN+ TYN  I    N   + +A     +M   G
Sbjct: 465 FIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNG 524

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVI 217
             PN   +T L+   ++KN    ++
Sbjct: 525 CKPNDESYTVLLGLLLKKNSYHDLV 549



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 44/114 (38%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+  Y  LI+  C  G L  A+    SL RAGL P+   Y   +   C       A  LF
Sbjct: 73  NLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLF 132

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           L M  +G A     +  L+          + + +   M      P + + SI+V
Sbjct: 133 LLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMV 186



 Score = 38.5 bits (88), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/108 (19%), Positives = 47/108 (43%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y  +I+   +   + +A      M   N  P + +Y  +I   C     + A+ +
Sbjct: 613 PSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSI 672

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           F +++ +    D + + +++D L +     + +RLL  M +   RP +
Sbjct: 673 FGDILSKEYNRDEIAWKILIDGLLQKGNTADCSRLLSFMEEQNCRPGS 720


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 124/249 (49%), Gaps = 6/249 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   KP   TYN +ID +CKEG V+ A+ LF +MK   + P+ VTYNS+I GF      +
Sbjct: 88  GAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLD 147

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +    F EM D   + DV+T+N +++  CK  K+ +       M + G++P      N+V
Sbjct: 148 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKP------NVV 201

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  L+D  CK G ++ A +    + R GL+PN  TY   I A C    +  A  L  +M
Sbjct: 202 SYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEM 261

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
              GV  N V +T L+         ++ + LL  M + ++        +++D L KN++ 
Sbjct: 262 LQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLV 321

Query: 249 LNSIPQFNR 257
             +I  F R
Sbjct: 322 SKAIDYFGR 330



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T + N ++    K G  D  K  F  M      P V TYN +I   C   D   A  L
Sbjct: 58  PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGL 117

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL  D VT+N ++D   K  ++D+     + M       D  CE +++ Y  L
Sbjct: 118 FEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEM------KDMCCEPDVITYNAL 171

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CK GKL    E  + + R GL PNVV+Y+  + A C +  M +A   ++DM   G+
Sbjct: 172 INCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 231

Query: 194 APNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASIL 235
            PN   +T+L+ ++ +    S       E+L+   + NV+ Y +++
Sbjct: 232 VPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALI 277



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 10/214 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V+Y+T++D  CKEG + +A + ++ M+   + PN  TY SLI  +C   + ++A  
Sbjct: 197 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFR 256

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+  G++ +VVT+  ++D LC      E   LLD M++  ++      + +V +  
Sbjct: 257 LANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIK------VTVVTFCV 310

Query: 133 LIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           LIDGLCK   +  A +    ++   GL  N   Y   I  LC   Q++ A  LF  M  K
Sbjct: 311 LIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQK 370

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           G+ P+   +T+LM    ++     V+E L   DK
Sbjct: 371 GLVPDRTAYTSLMDGNFKQ---GNVLEALALRDK 401



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 44/260 (16%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  G+V  PN  TY ++ID  CK G +  A  L  +M    +  NVVTY +LI G C   
Sbjct: 227 RRVGLV--PNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWE 284

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR------------------------- 100
           +  E  +L  EM++  ++  VVTF V++D LCKN+                         
Sbjct: 285 NPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIY 344

Query: 101 -----------KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149
                      +++ AT L + M Q G+ PD        AY  L+DG  K G +  A  L
Sbjct: 345 TAMIDGLCKGNQVEAATTLFEQMAQKGLVPDR------TAYTSLMDGNFKQGNVLEALAL 398

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
              +   G+  +++ Y   +  L +  Q+ KA     +M  +G+ P+ V+  +++     
Sbjct: 399 RDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYE 458

Query: 210 KNETSKVIELLRSMDKRNVM 229
               ++ +EL   + K  ++
Sbjct: 459 LGCINEAVELQSYLMKHQLL 478


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N V+Y  +I G C+ G +D+A ELF QMK++   P+V TY  L+  FC      EA 
Sbjct: 256 CLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEAL 315

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F EM++ G++ +V T+ V++D  CK  KMDE   +L  M++ G+        ++V + 
Sbjct: 316 KFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVS------SVVPFN 369

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK G +++A  +  S+    + PN  TYN  I   C  + MD+A  L   M   
Sbjct: 370 ALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYEN 429

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++PN V + TL+    +         L   M K   +P        +D L K
Sbjct: 430 KLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCK 482



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 10/232 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V +N +IDG CK G ++ A  +   MK   + PN  TYN LI GFC     + A  L 
Sbjct: 364 SVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALL 423

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--AFCEINIVAYGC 132
            +M +  L  ++VT+N ++  LCK R +D A RL  LMI+ G  PD   FC         
Sbjct: 424 NKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFC--------A 475

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            ID LCK+GK++ A ++ +SL       N   Y   I   C  E+   AH LF  M  +G
Sbjct: 476 FIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEG 535

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             PN + F  L+    ++ +    + L+  M K +  P     +I+++ +++
Sbjct: 536 CFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILR 587



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 8/244 (3%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G  +FG  C  ++ TY ++I G CK   +  A ++F  M  E    N V+Y +LIHGFC 
Sbjct: 215 GLMKFGFCC--DSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCE 272

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
               +EA  LF +M + G   DV T+ V++   C+  K  EA +  + M++ G+ P    
Sbjct: 273 VGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEP---- 328

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N+  Y  LID  CK+GK+    E+  ++   GL+ +VV +N  I   C    M+ A  
Sbjct: 329 --NVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAIC 386

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +   M++  V PN   +  L+  F RK    + + LL  M +  + P     + ++  L 
Sbjct: 387 VLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLC 446

Query: 244 KNEI 247
           K  +
Sbjct: 447 KARV 450



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 32/260 (12%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC PN+ TYN +I G C++  +D+A  L  +M +  ++PN+VTYN+LIHG C A   + A
Sbjct: 396 VC-PNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSA 454

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD---------------LMIQG 115
             L   M+  G   D  TF   +D LCK  K+++A ++ +                +I G
Sbjct: 455 WRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDG 514

Query: 116 GVRPDAF--------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
             + + F              C  N + +  L+DGL K GK+++A  L   + +    P 
Sbjct: 515 YCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPT 574

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLD-MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           V TY I I  +  +   D+A ++FLD M   G  PN V +T  + ++ R+    +  E++
Sbjct: 575 VHTYTILIEEILRESDFDRA-NMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMV 633

Query: 221 RSMDKRNVMPYASILSIIVD 240
             + +  ++  + I  ++V+
Sbjct: 634 VKIKEEGILLDSFIYDVLVN 653



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  +YN +   L + G +D+   LF  M ++ + PN++++N++++  C   +   A+  F
Sbjct: 154 SVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYF 213

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             +M  G   D  T+  ++   CK  ++ +A ++ ++M Q G      C  N V+Y  LI
Sbjct: 214 CGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEG------CLRNEVSYTNLI 267

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C++GK+  A EL   +   G  P+V TY + + A C   +  +A   F +M   G+ 
Sbjct: 268 HGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIE 327

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           PN   +T L+  F +  +  + +E+L +M ++ ++      + ++D
Sbjct: 328 PNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALID 373



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+   ID LCK G V++A ++F  +K+++   N   Y +LI G+C A   ++A  L
Sbjct: 468 PDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLL 527

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+  G   + +TFNV++D L K  K+++A  L+D+M +   +P       +  Y  L
Sbjct: 528 FKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKP------TVHTYTIL 581

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+ + +      A      +  +G  PNVVTY   I A C   ++ +A ++ + ++ +G+
Sbjct: 582 IEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGI 641

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
             +  I+  L+ ++    +      +L  M      P     SI++  L+
Sbjct: 642 LLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLI 691



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 20/247 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TY  +I+ + +E   D+A     QM      PNVVTY + I  +C      EAE 
Sbjct: 572 KPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEE 631

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA----------- 121
           + +++ + G+  D   ++V+++      ++D A  +L  M   G  P             
Sbjct: 632 MVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLI 691

Query: 122 FCEINIVAYGCLIDG---------LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
           F + N    G  ++          + KI   +    L + +   G +PNV TY+  I  L
Sbjct: 692 FEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGL 751

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           C  E +  A  LF  M+  G++P+  I  +L+ S  +     + + LL SM + N + + 
Sbjct: 752 CKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHL 811

Query: 233 SILSIIV 239
               ++V
Sbjct: 812 ESYKLLV 818



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 29/208 (13%)

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------ 119
             +EA ++   +        V ++N +   L +   +DE   L   M+  GV P      
Sbjct: 135 SSHEARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFN 194

Query: 120 ---DAFCEI-NIV---AYGC----------------LIDGLCKIGKLKNARELSQSLTRA 156
              +A C+I N+V   AY C                LI G CKI +L +A ++ + + + 
Sbjct: 195 TMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQE 254

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G + N V+Y   IH  C   ++D+A +LF  M+  G  P+   +T L+ +F    + ++ 
Sbjct: 255 GCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEA 314

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++    M +  + P     ++++D   K
Sbjct: 315 LKFFEEMVENGIEPNVYTYTVLIDYFCK 342



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 67/275 (24%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI------------------------ 47
           C+PN VTY   I   C++G + +A+E+ +++K+E I                        
Sbjct: 606 CQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAF 665

Query: 48  -----------NPNVVTYNSLIHGFCY---------------------ANDGNEAEY--- 72
                       P+  TY+ L+    +                     AN    A++   
Sbjct: 666 GVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEII 725

Query: 73  --LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF +M+++G   +V T++ ++  LCK   +  A RL + M + G+ P      NI  +
Sbjct: 726 TMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSE----NI--H 779

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L+   CK+G  + A  L  S+     + ++ +Y + +  L      +KA ++F  +  
Sbjct: 780 NSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLS 839

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            G   + V++  L+   +RK    +  +L   M+K
Sbjct: 840 CGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEK 874



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY+ +I GLCK   +  A  LF  MK+  I+P+   +NSL+   C      EA 
Sbjct: 737 CVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEAL 796

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM+    + + ++ +++  L +    ++A  +   ++  G   D       V + 
Sbjct: 797 RLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDE------VVWK 850

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG 157
            L+DGL + G +    +L   + + G
Sbjct: 851 VLLDGLVRKGYVDECSQLRDIMEKTG 876


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N+  YN +I  LCK+G +D+A  L  +M+ +  NP++ +YN++I+  C      EAE++F
Sbjct: 415 NSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMF 474

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             +++ G+ ++ +T+N I+  L ++ +  +A RL   MI  G      C +++V+Y  LI
Sbjct: 475 ENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG------CSLDVVSYNGLI 528

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             +CK G +  +  L + +   G+ PN V+YNI I  LC + ++  A +L   M  +G+A
Sbjct: 529 KAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLA 588

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           P+ V + TL+    +       + LL  +   NV P     +I++
Sbjct: 589 PDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 6/216 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G V + N V +NT+I G   EG + +A EL+  M  +   P+  TY+ L+HG C     
Sbjct: 303 LGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRI 362

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  L  EM  +G   +VVT+ +++   CKN   D+   LL+ M   G+       +N 
Sbjct: 363 GSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL------TLNS 416

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  +I  LCK G++  A  L Q +   G  P++ +YN  I+ LCN+EQM++A  +F +
Sbjct: 417 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN 476

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +  +GV  N + + T++ + +R       + L + M
Sbjct: 477 LLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEM 512



 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY+ ++ GLCK G +  A  L  +M+ +   PNVVTY  ++H FC     ++  
Sbjct: 342 CQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTR 401

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +GL  +   +N ++  LCK+ +MDEA  L+  M   G  PD      I +Y 
Sbjct: 402 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD------ICSYN 455

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  LC   +++ A  + ++L   G++ N +TYN  IHAL  D +   A  L  +M + 
Sbjct: 456 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G + + V +  L+ +  +     + + LL  M ++ + P     +I++  L K
Sbjct: 516 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++   CK G  D  + L  +M  + +  N   YN +I+  C     +EA  L
Sbjct: 379 PNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGL 438

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G   D+ ++N I+  LC N +M+EA  + + +++ GV        N + Y  +
Sbjct: 439 IQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVA------NGITYNTI 492

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  L + G+ ++A  L++ +   G   +VV+YN  I A+C D  +D++  L  +M  KG+
Sbjct: 493 IHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGI 552

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V +  L+    ++      +EL + M  + + P     + +++ L K
Sbjct: 553 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCK 603



 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 10/217 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y T+I  LC +G V +A  L  +M       +V T++ ++ G C      EA 
Sbjct: 206 CVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAA 265

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM +G    V+T+  ++  LC+ R+ DEA  +L      G  P    E+N+V + 
Sbjct: 266 RLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAML------GRVP----ELNVVLFN 315

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G    GKL  A EL +++   G  P+  TY+I +H LC   ++  A  L  +ME K
Sbjct: 316 TVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKK 375

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           G APN V +T ++ SF +         LL  M  + +
Sbjct: 376 GFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 412



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 10/235 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +  T++ ++ G+C  G V +A  L  +M  +   P V+TY  L+ G C     +EA 
Sbjct: 241 CAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEAR 300

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+ R  + +VV FN ++       K+ EAT L + M   G +PDA        Y 
Sbjct: 301 ----AMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAH------TYS 350

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK+G++ +A  L + + + G  PNVVTY I +H+ C +   D    L  +M  K
Sbjct: 351 ILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 410

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G+  N   +  ++ +  +     + + L++ M  +   P     + I+  L  NE
Sbjct: 411 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 465



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GVV   N +TYNTII  L ++G    A  L  +M     + +VV+YN LI   C   +
Sbjct: 479 EEGVVA--NGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN 536

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + +  L  EM ++G++ + V++N+++ ELCK R++ +A  L   M+  G+ PD      
Sbjct: 537 VDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD------ 590

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           IV Y  LI+GLCK+G +  A  L + L    + P+++TYNI I   C    +D A  + L
Sbjct: 591 IVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAA-MLL 649

Query: 187 DMEVKGVAP 195
           +  +  V P
Sbjct: 650 NRAMAAVCP 658


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 125/295 (42%), Gaps = 60/295 (20%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  RE G  C PN VTY  +I    K   V  A ELF  M  E   PN+VTY++LI G C
Sbjct: 542 NEMREVG--CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599

Query: 63  YANDGNEAEYLFIEMM-----------------DRGLQSDVVTFNVIMDELCKNRKMDEA 105
            A    +A  +F  M                  D   + +VV +  ++D  CK  +++EA
Sbjct: 600 KAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEA 659

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL------- 158
            +LLD M   G      CE N + Y  LIDGLCK+GKL  A+E+   ++  G        
Sbjct: 660 RKLLDAMSMEG------CEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTY 713

Query: 159 ----------------------------MPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
                                        PNVV Y   I  LC   + D+A+ L   ME 
Sbjct: 714 SSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEE 773

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           KG  PN V +T ++  F R  +    +ELL  M  + V P      +++D   KN
Sbjct: 774 KGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKN 828



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN + Y+ +IDGLCK G +D+A+E+  +M +      + TY+SLI  +      + A 
Sbjct: 671 CEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 730

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M++     +VV +  ++D LCK  K DEA +L+ +M + G +P      N+V Y 
Sbjct: 731 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQP------NVVTYT 784

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG  +IGK++   EL + +   G+ PN VTY + I   C +  +D AH+L  +M+  
Sbjct: 785 AMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 844

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               +   +  ++  F    E  + + LL  + + +  P+ S+  ++VD L+K +
Sbjct: 845 HWPTHAAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQ 897



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 125/241 (51%), Gaps = 11/241 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TY  ++D  CK G +++A++ F +M++    PNVVTY +LIH +  A   + A  LF
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---FCEI------ 125
             M+  G   ++VT++ ++D  CK  +M++A ++ + M      PD    F +       
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSE 636

Query: 126 --NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N+V YG L+DG CK+ +++ AR+L  +++  G  PN + Y+  I  LC   ++D+A +
Sbjct: 637 RPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 696

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           +  +M   G       +++L+  + +        ++L  M + +  P   I + ++D L 
Sbjct: 697 VKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 756

Query: 244 K 244
           K
Sbjct: 757 K 757



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y  ++DG CK   V++A++L   M  E   PN + Y++LI G C     +EA+ 
Sbjct: 637 RPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 696

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM + G  + + T++ ++D   K ++ D A+++L  M++    P      N+V Y  
Sbjct: 697 VKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAP------NVVIYTE 750

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDGLCK+GK   A +L Q +   G  PNVVTY   I       +++   +L   M  KG
Sbjct: 751 MIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKG 810

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           VAPN V +  L+    +         LL  M + +   +A+
Sbjct: 811 VAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAA 851



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 108/238 (45%), Gaps = 29/238 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  +IDGLCK G  D+A +L   M+++   PNVVTY ++I GF          
Sbjct: 741 CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCL 800

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA-- 129
            L   M  +G+  + VT+ V++D  CKN  +D A  LL+ M Q      A     ++   
Sbjct: 801 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGF 860

Query: 130 -------------------------YGCLIDGLCKIGKLKNARELSQSLT--RAGLMPNV 162
                                    Y  L+D L K  +L+ A  L + +    A L+   
Sbjct: 861 NKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYS 920

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            TYN  I +LC   ++DKA  LF +M  KGV P    F +L+    R ++ S+ + LL
Sbjct: 921 STYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLL 978



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 12/216 (5%)

Query: 14  PNTVTYNTIIDGLCKE------GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           P  V YN +I  +C +        ++ A++ + +M    +  N +  +S     C A   
Sbjct: 405 PGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKY 464

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            +A  +  EM+ +G   D  T++ ++  LC   KM+ A  L + M +GG+  D +     
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVY----- 519

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  ++D  CK G ++ AR+    +   G  PNVVTY   IHA    +++  A++LF  
Sbjct: 520 -TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           M  +G  PN V ++ L+    +  +  K  ++   M
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERM 614



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 115/277 (41%), Gaps = 47/277 (16%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR     C PN VTY+T++ G   +  + + K +   M  E   P+   +NSL+H +C +
Sbjct: 326 NRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTS 385

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR------------------------ 100
            D + A  L  +M+  G     V +N+++  +C ++                        
Sbjct: 386 GDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVV 445

Query: 101 -----------------KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
                            K ++A  ++  MI  G  PD      ++ Y      LC   K+
Sbjct: 446 LNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGY------LCNASKM 499

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
           + A  L + + R GL+ +V TY I + + C    +++A   F +M   G  PN V +T L
Sbjct: 500 ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 559

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + ++++  + S   EL  +M     +P     S ++D
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALID 596



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 9/231 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++   C+ G    A E   ++KD    P+  TYN LI  F  A+  + A  +  EM  
Sbjct: 204 NVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSL 263

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
             L+ D  T       LCK  K  EA   L LM      PD       V Y  LI GLC+
Sbjct: 264 ANLRMDGFTLRCYAYSLCKVGKWREA---LTLMETENFVPDT------VFYTKLISGLCE 314

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A +    +     +PNVVTY+  +    N +Q+ +   +   M ++G  P+  I
Sbjct: 315 ASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKI 374

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
           F +L+ ++    + S   +LL+ M K    P   + +I++  +  ++ SL+
Sbjct: 375 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLS 425



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMK--DENINPNVVTYNSLIHGFCYANDGNEAE 71
           P    Y  ++D L K   ++ A  L  ++      +     TYNSLI   C AN  ++A 
Sbjct: 881 PFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAF 940

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
            LF EM  +G+  ++ TF  ++  L +N K+ EA  LLD +
Sbjct: 941 RLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLLDFI 981


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N+  YN +I  LCK+G +D+A  L  +M+ +  NP++ +YN++I+  C      EAE++F
Sbjct: 399 NSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMF 458

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             +++ G+ ++ +T+N I+  L ++ +  +A RL   MI  G      C +++V+Y  LI
Sbjct: 459 ENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG------CSLDVVSYNGLI 512

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             +CK G +  +  L + +   G+ PN V+YNI I  LC + ++  A +L   M  +G+A
Sbjct: 513 KAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLA 572

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           P+ V + TL+    +       + LL  +   NV P     +I++
Sbjct: 573 PDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 617



 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 6/216 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G V + N V +NT+I G   EG + +A EL+  M  +   P+  TY+ L+HG C     
Sbjct: 287 LGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRI 346

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  L  EM  +G   +VVT+ +++   CKN   D+   LL+ M   G+       +N 
Sbjct: 347 GSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL------TLNS 400

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  +I  LCK G++  A  L Q +   G  P++ +YN  I+ LCN+EQM++A  +F +
Sbjct: 401 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN 460

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +  +GV  N + + T++ + +R       + L + M
Sbjct: 461 LLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEM 496



 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY+ ++ GLCK G +  A  L  +M+ +   PNVVTY  ++H FC     ++  
Sbjct: 326 CQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTR 385

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +GL  +   +N ++  LCK+ +MDEA  L+  M   G  PD      I +Y 
Sbjct: 386 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD------ICSYN 439

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  LC   +++ A  + ++L   G++ N +TYN  IHAL  D +   A  L  +M + 
Sbjct: 440 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 499

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G + + V +  L+ +  +     + + LL  M ++ + P     +I++  L K
Sbjct: 500 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 552



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++   CK G  D  + L  +M  + +  N   YN +I+  C     +EA  L
Sbjct: 363 PNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGL 422

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G   D+ ++N I+  LC N +M+EA  + + +++ GV        N + Y  +
Sbjct: 423 IQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVA------NGITYNTI 476

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  L + G+ ++A  L++ +   G   +VV+YN  I A+C D  +D++  L  +M  KG+
Sbjct: 477 IHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGI 536

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V +  L+    ++      +EL + M  + + P     + +++ L K
Sbjct: 537 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCK 587



 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 10/217 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y T+I  LC +G V +A  L  +M       +V T++ ++ G C      EA 
Sbjct: 190 CVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAA 249

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM +G    V+T+  ++  LC+ R+ DEA  +L      G  P    E+N+V + 
Sbjct: 250 RLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAML------GRVP----ELNVVLFN 299

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G    GKL  A EL +++   G  P+  TY+I +H LC   ++  A  L  +ME K
Sbjct: 300 TVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKK 359

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           G APN V +T ++ SF +         LL  M  + +
Sbjct: 360 GFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 396



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 10/235 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +  T++ ++ G+C  G V +A  L  +M  +   P V+TY  L+ G C     +EA 
Sbjct: 225 CAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEAR 284

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+ R  + +VV FN ++       K+ EAT L + M   G +PDA        Y 
Sbjct: 285 ----AMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAH------TYS 334

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK+G++ +A  L + + + G  PNVVTY I +H+ C +   D    L  +M  K
Sbjct: 335 ILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 394

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G+  N   +  ++ +  +     + + L++ M  +   P     + I+  L  NE
Sbjct: 395 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 449



 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GVV   N +TYNTII  L ++G    A  L  +M     + +VV+YN LI   C   +
Sbjct: 463 EEGVVA--NGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN 520

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + +  L  EM ++G++ + V++N+++ ELCK R++ +A  L   M+  G+ PD      
Sbjct: 521 VDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD------ 574

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           IV Y  LI+GLCK+G +  A  L + L    + P+++TYNI I   C    +D A  + L
Sbjct: 575 IVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAA-MLL 633

Query: 187 DMEVKGVAP 195
           +  +  V P
Sbjct: 634 NRAMAAVCP 642


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 120/238 (50%), Gaps = 6/238 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G     +  TYN +I  +CKEG +  AK LF QMK   + P++VTYNSLI G+      +
Sbjct: 245 GAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLD 304

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           E+  LF EM D G + DV+T+N +++  CK  +M +A   L  M   G++P      N+V
Sbjct: 305 ESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKP------NVV 358

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LID LCK   L+ A +    + R GL PN  TY   I A C    +  A  L  +M
Sbjct: 359 TYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEM 418

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               V  N V +TTL+    ++    +  +L R+M K  V P     + +V   +KN+
Sbjct: 419 LQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNK 476



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTY+T+ID LCKE  + +A +  L M+   ++PN  TY SLI   C A   ++A  
Sbjct: 354 KPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALK 413

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+   +  +VVT+  ++D LCK  +M EA  L   MI+ GV P      N+  Y  
Sbjct: 414 LADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTP------NLKTYTA 467

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G  K  +++NA EL + +    + P+++ Y   I  LC+  ++++   +  +M+  G
Sbjct: 468 LVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACG 527

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +  N VI+T  M ++ +  +T + + LL+ M    V        +++D L K  +   +I
Sbjct: 528 IRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAI 587

Query: 253 PQFNR 257
             F R
Sbjct: 588 DYFAR 592



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P    ++ +     + G +++A + F +M    + P   + N+ ++       G+ +
Sbjct: 177 VCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLS 236

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              F +M+  G+   V T+N+++  +CK   M  A  L   M Q G+ PD      IV Y
Sbjct: 237 NKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPD------IVTY 290

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDG  K+G L  +  L + +   G  P+V+TYN  I+  C  EQM KA     +M+ 
Sbjct: 291 NSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKN 350

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ PN V ++TL+ +  +++   + I+ L  M +  + P     + ++D
Sbjct: 351 SGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLID 400



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 10/226 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   + N  +  L K G  D + + F  M    I  +V TYN +I   C   D   A+ L
Sbjct: 215 PKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSL 274

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M   GL  D+VT+N ++D   K   +DE+  L + M       D  CE +++ Y  L
Sbjct: 275 FHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEM------KDVGCEPDVITYNAL 328

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CK  ++  A      +  +GL PNVVTY+  I ALC +  + +A    LDM   G+
Sbjct: 329 INCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGL 388

Query: 194 APNCVIFTTLMPSFIRKNETSKVI----ELLRSMDKRNVMPYASIL 235
           +PN   +T+L+ +  +    S  +    E+L+     NV+ Y ++L
Sbjct: 389 SPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLL 434



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 5/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + Y TII GLC +  +++ + +  +MK   I  N V Y   +  +       EA  L
Sbjct: 495 PDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNL 554

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM D G++  +VTF V++D LCK   ++EA      M    ++P+     N+     L
Sbjct: 555 LQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPN-----NVAVCTAL 609

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK   ++ A++L   +    ++P+ + Y   I      +   +A ++   M   G+
Sbjct: 610 IDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGM 669

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             +   +T+L+    + N   +    L  M  + ++P
Sbjct: 670 ELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVP 706



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 7/215 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + N+V Y   +D   K G   +A  L  +M D  +   +VT+  LI G C      EA  
Sbjct: 529 RANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAID 588

Query: 73  LFIEMMDRGLQ-SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            F  M D  LQ ++V     ++D LCKN  ++ A +L D M    + PD       +AY 
Sbjct: 589 YFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDK------IAYT 642

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG  K    + A  +   ++  G+  ++  Y   +  L     + +A     +M  K
Sbjct: 643 ALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGK 702

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           G+ P+ ++   L+  +       + IEL   + K+
Sbjct: 703 GIVPDEILCIRLLRKYYELGSIDEAIELHDELLKK 737



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 6/204 (2%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P    +++L   F       EA   F  M    +     + N  +  L K  K D + + 
Sbjct: 180 PGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKF 239

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
              M+  G+    F       Y  +I  +CK G +  A+ L   + + GL P++VTYN  
Sbjct: 240 FRDMVGAGIAQSVF------TYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSL 293

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I        +D++  LF +M+  G  P+ + +  L+  F +  +  K    L  M    +
Sbjct: 294 IDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGL 353

Query: 229 MPYASILSIIVDLLVKNEISLNSI 252
            P     S ++D L K  +   +I
Sbjct: 354 KPNVVTYSTLIDALCKEHMLQQAI 377


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 118/217 (54%), Gaps = 6/217 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C  + VT+  +ID  CK G +D+A  L  +MK + +  +++ Y SLI GFC   + +
Sbjct: 205 GSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELD 264

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
             + LF E+++RG     +T+N ++   CK  ++ EA+ + + M++ GVRP      N+ 
Sbjct: 265 RGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRP------NVY 318

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LIDGLC +GK K A +L   + +    PNVVTYNI I+ LC D  +  A ++   M
Sbjct: 319 TYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELM 378

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           + +   P+ + + +L+     K +  +  +LL  M K
Sbjct: 379 KKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLK 415



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 6/238 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   YN ++ GLC+     KA  L  +M+  ++ P+VV+YN++I GFC   +  +A  L 
Sbjct: 141 NVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLA 200

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM   G    +VT+ +++D  CK  KMDEA  LL  M   G+  D      ++ Y  LI
Sbjct: 201 NEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEAD------LIVYTSLI 254

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C  G+L   + L   +   G  P  +TYN  I   C   ++ +A ++F  M  +GV 
Sbjct: 255 RGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVR 314

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           PN   +T L+       +T + ++LL  M +++  P     +II++ L K+ +  +++
Sbjct: 315 PNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADAL 372



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 10/235 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYNT+I G CK G + +A E+F  M +  + PNV TY  LI G C      EA  L
Sbjct: 280 PCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQL 339

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ +  + +VVT+N+I+++LCK+  + +A  +++LM +   RPD       + Y  L
Sbjct: 340 LNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDN------ITYNSL 393

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLM--PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           + GLC  G L  A +L   + +      P+V+++N  IH LC   ++ +A D++ D+ V+
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIY-DLLVE 452

Query: 192 GVAPNCVIFTT-LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +    ++ T  L+ S ++  + +K +EL + +    ++P +   + ++D   K 
Sbjct: 453 KLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKT 507



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 8/230 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN II+ LCK+  V  A E+   MK     P+ +TYNSL+ G C   D +EA  
Sbjct: 349 EPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASK 408

Query: 73  LFIEMMDRGLQS--DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           L   M+     +  DV++FN ++  LCK  ++ +A  + DL+++     D      IV  
Sbjct: 409 LLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGD------IVTT 462

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L++   K G +  A EL + ++ + ++PN  TY   I   C    ++ A  L   M +
Sbjct: 463 NILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRL 522

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             + P+   +  L+ S  +K    +   L   M + +  P     +I++D
Sbjct: 523 SELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMID 572



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 124/234 (52%), Gaps = 8/234 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKA-KELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEA 70
           +P+ +TYN+++ GLC +G +D+A K L+L +KD +  +P+V+++N+LIHG C  N  ++A
Sbjct: 384 RPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQA 443

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             ++  ++++    D+VT N++++   K+  +++A  L   +    + P      N   Y
Sbjct: 444 LDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVP------NSDTY 497

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDG CK G L  A+ L   +  + L P+V  YN  + +LC    +D+A  LF +M+ 
Sbjct: 498 TTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQR 557

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
               P+ + F  ++   ++  +      LL  M    + P     S +++  +K
Sbjct: 558 DDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLK 611



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VT N +++   K G V+KA EL+ Q+ +  I PN  TY ++I GFC     N A+ L 
Sbjct: 458 DIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLL 517

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M    L   V  +N ++  LCK   +D+A RL + M +    PD      ++++  +I
Sbjct: 518 CKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPD------VISFNIMI 571

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G +K+A  L   ++ AGL P++ TY+  I+       +D+A   F  M   G  
Sbjct: 572 DGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFE 631

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           P+  I  +++   I + ET K+ E ++ +  ++V+    +   ++D +
Sbjct: 632 PDAHICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDKELTCTVMDYM 679



 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 29/237 (12%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A   + +M + +   N V+ + L+  F        A  +   M+ RG   +V  +N+++ 
Sbjct: 91  AFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLK 150

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPD---------AFCE--------------------I 125
            LC+N +  +A  LL  M Q  + PD          FCE                     
Sbjct: 151 GLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSW 210

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           ++V +G LID  CK GK+  A  L + +   GL  +++ Y   I   C+  ++D+   LF
Sbjct: 211 SLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALF 270

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            ++  +G +P  + + TL+  F +     +  E+   M +R V P     + ++D L
Sbjct: 271 DEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGL 327



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 6/149 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+ TY T+IDG CK G ++ AK L  +M+   + P+V  YN L+   C     ++A  L
Sbjct: 492 PNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRL 551

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM       DV++FN+++D   K   +  A  LL  M   G+ PD F       Y  L
Sbjct: 552 FEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLF------TYSKL 605

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           I+   K+G L  A      +  +G  P+ 
Sbjct: 606 INRFLKLGYLDEAISFFDKMIDSGFEPDA 634



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 8/135 (5%)

Query: 9   GVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           G++CK       P+   YN ++  LCK+G +D+A  LF +M+ ++  P+V+++N +I G 
Sbjct: 515 GLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGS 574

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
             A D   AE L + M   GL  D+ T++ +++   K   +DEA    D MI  G  PDA
Sbjct: 575 LKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDA 634

Query: 122 FCEINIVAYGCLIDG 136
               +++ Y C+  G
Sbjct: 635 HICDSVLKY-CISQG 648



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 60/129 (46%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +++N +IDG  K G +  A+ L + M    ++P++ TY+ LI+ F      +EA   
Sbjct: 562 PDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISF 621

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+D G + D    + ++       + D+ T  +  ++   V  D      ++ Y C 
Sbjct: 622 FDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDKELTCTVMDYMCS 681

Query: 134 IDGLCKIGK 142
             G   I K
Sbjct: 682 SSGNMDIAK 690



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 6/155 (3%)

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149
           N +M  L ++R  + A      M++     D F  IN V+   L++   ++ K   A  +
Sbjct: 76  NNLMATLVRSRNHEVAFSFYRKMLE----TDTF--INFVSLSGLLECFVQMRKTGFAHGV 129

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
              + + G   NV  YNI +  LC + +  KA  L  +M    + P+ V + T++  F  
Sbjct: 130 LALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCE 189

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             E  K ++L   M             I++D   K
Sbjct: 190 GKELEKALQLANEMQGSGCSWSLVTWGILIDAFCK 224


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 8/244 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ GV  KP+ VTY T+I  LC+ G +D A E F QM D+ + P+   Y+ LI GFC
Sbjct: 418 NEMRDHGV--KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFC 475

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 +A+ L  E+M+ G+  D+V F+ I++ LCK  ++ +A  + DL +  G+ P A 
Sbjct: 476 THGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA- 534

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                V Y  L+DG C +GK++ A  +  ++  AG+ PN V Y   ++  C   ++D+  
Sbjct: 535 -----VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            LF +M  KG+ P+ +++  ++        T         M +  +       +I++  L
Sbjct: 590 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGL 649

Query: 243 VKNE 246
            KN 
Sbjct: 650 FKNR 653



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 124/251 (49%), Gaps = 6/251 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G VC P+ V Y+T+IDG  KEG V+KA +LF +M    I P+ VTY+S++H  C A  
Sbjct: 210 EGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARA 269

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++AE    +M+++G+  +  T+N ++       +  EA R+   M +  + PD      
Sbjct: 270 MDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD------ 323

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V    L+  LCK GK+K AR++  ++   G  PNV +Y I ++       +    DLF 
Sbjct: 324 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFD 383

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M   G+AP+   F  L+ ++       K + +   M    V P       ++  L +  
Sbjct: 384 LMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 443

Query: 247 ISLNSIPQFNR 257
              +++ +FN+
Sbjct: 444 KMDDAMEKFNQ 454



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y T+++G CK G +D+   LF +M  + I P+ + YN +I G   A     A+ 
Sbjct: 566 EPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKV 625

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM + G+  +  T+N+++  L KNR  DEA  L   +    V+      INI+    
Sbjct: 626 KFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVK------INIITLNT 679

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G+ +  +++ A++L  S++R+GL+P VVTY+I I  L  +  +++A D+F  M+  G
Sbjct: 680 MIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             P+  +   ++   ++KNE  +    L  +D+RN         ++VDL 
Sbjct: 740 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLF 789



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY++++  LCK   +DKA+    QM ++ + PN  TYN+LI+G+       EA  +
Sbjct: 252 PDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRV 311

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM    +  DVVT +++M  LCK  K+ EA  + D M   G  P      N+ +Y  +
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNP------NVFSYTIM 365

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++G    G L +  +L   +   G+ P++ T+N+ I A  N   +DKA  +F +M   GV
Sbjct: 366 LNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 425

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V + T++ +  R  +    +E    M  + V P
Sbjct: 426 KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAP 462



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 2   ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           A G R    V  P + TY  ++D   +    + A   F Q+    +  N++  N L+ GF
Sbjct: 101 AQGPR----VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGF 156

Query: 62  CYANDGNEA-EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           C A   +EA + L     + G   DV ++++++  LC   K  +A  LL +M +GG    
Sbjct: 157 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG---- 212

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A C  ++VAY  +IDG  K G +  A +L + + + G+ P+ VTY+  +HALC    MDK
Sbjct: 213 AVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDK 272

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A      M  KGV PN   +  L+  +    +  + + + + M + +++P    LS+++ 
Sbjct: 273 AEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 332

Query: 241 LLVK 244
            L K
Sbjct: 333 SLCK 336



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 135/274 (49%), Gaps = 33/274 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAE 71
           PN  +Y  +++G   +G +    +LF  M  + I P++ T+N LI    YAN G  ++A 
Sbjct: 357 PNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA--YANCGMLDKAM 414

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            +F EM D G++ DVVT+  ++  LC+  KMD+A    + MI  GV PD          F
Sbjct: 415 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474

Query: 123 C--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C                     ++IV +  +I+ LCK+G++ +A+ +       GL P  
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA 534

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V Y++ +   C   +M+KA  +F  M   G+ PN V++ TL+  + +     + + L R 
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFRE 594

Query: 223 MDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           M ++ + P   + +II+D L +   ++ +  +F+
Sbjct: 595 MLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFH 628



 Score = 37.0 bits (84), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 44/96 (45%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTY+ +I  L KEG V++A+++F  M++    P+    N ++      N+   A   
Sbjct: 707 PCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAY 766

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
             ++ +R    + +T  +++D         E  R L
Sbjct: 767 LSKIDERNFSLEHLTTMLLVDLFSSKGTCREHIRFL 802


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 107/191 (56%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A +L
Sbjct: 245 PNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK+  +D A      MIQ   R D       V Y  L
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDD------VVYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 419 VPSVVTYNVLM 429



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 6/210 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 145 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  K+D+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVP------NSVTFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AH L  +M +KG+ P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKI 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +TTL+    +  +     E  + M + N 
Sbjct: 319 TYTTLIDGCCKDGDLDTAFEHRKRMIQENT 348



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  GL P+ +TY   I   C D  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              + V++T L+    R+ ++    ++LR M    + P A   ++I++   K 
Sbjct: 348 TRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 209 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDK------ITYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +     + V Y   I  LC + Q   A  +  +M   G
Sbjct: 323 LIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + ++D A++LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 243 LVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 280



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWG 172

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 14/235 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP----NVVTYNSLIHGFCYANDGNE 69
           P+ V Y  +IDG C+ G +  A    L+M+DE +      +VVTYN+ ++G C      +
Sbjct: 430 PDNVIYTILIDGFCRNGALSDA----LKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFAD 485

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ LF EM++RG+  D  TF  ++   CK+  MD+A  L + M++  ++PD       V 
Sbjct: 486 ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDK------VT 539

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LIDG CK G++  A+EL   + R  ++P+ ++Y   ++  C+   + +A +L   M 
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQML 599

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            KG+ PN V   TL+  + R  +  K  E L  M    ++P +   + ++D  +K
Sbjct: 600 EKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLK 654



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  +TYN I+ GLCK G  D+AK++ ++M    + PN  TYN+L+   C  ++  EA+ 
Sbjct: 324 EPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQE 383

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  RG+  D+V+F+ ++  L +N  + +A      M + G+ PD       V Y  
Sbjct: 384 IFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDN------VIYTI 437

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C+ G L +A ++   +   G   +VVTYN  ++ LC  +    A  LF +M  +G
Sbjct: 438 LIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERG 497

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+   FTTL+  + +     K + L  +M + N+ P     + ++D   K
Sbjct: 498 MVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCK 549



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 123/218 (56%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+IDG CK G + +AKEL+  M  ++I P+ ++Y ++++GFC +    EA  
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+++G++ ++VT N ++   C++  M +A   L  MI  G+ PD+F      +Y  
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSF------SYNT 647

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  K   L+ A  L   + + GL  N++TYN+ ++  C + +M +A  +   M   G
Sbjct: 648 LIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIG 707

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +++L+   + ++   +       M +R ++P
Sbjct: 708 INPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTYNT ++GLCK+     A  LF +M +  + P+  T+ +LI G+C   + ++A 
Sbjct: 463 CFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKAL 522

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M+   L+ D VT+N ++D  CK  +M  A  L D MI+  + PD       ++YG
Sbjct: 523 NLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDH------ISYG 576

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +++G C  G L  A  L   +   G+ PN+VT N  I   C    M KA++    M   
Sbjct: 577 TVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN 636

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           G+ P+   + TL+  ++++    K   L+  M+KR    N++ Y  IL
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLIL 684



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+ T+I G CK+G +DKA  LF  M   N+ P+ VTYN+LI GFC A +   A+ L
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+ + +  D +++  +++  C +  + EA  L D M++ G+RP      N+V    L
Sbjct: 560 WDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRP------NLVTCNTL 613

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G +  A E    +   G++P+  +YN  I     +  ++KA  L  +ME +G+
Sbjct: 614 IKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGL 673

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             N + +  ++  F  + +  +  ++LR M +  + P  +  S +++
Sbjct: 674 QFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++ GL + G+VD A E++ ++    I  NV T N +++  C         +   +M  
Sbjct: 226 NKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEG 285

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           +G+ +D+VT+N +++  C+   ++EA +LL+     G+ P       ++ Y  ++ GLCK
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEP------GLLTYNAILYGLCK 339

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           IGK   A+++   + + GL PN  TYN  +  +C  + + +A ++F +M  +GV P+ V 
Sbjct: 340 IGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVS 399

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           F++L+    R     + +   R M++  ++P   I +I++D   +N
Sbjct: 400 FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRN 445



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 124/253 (49%), Gaps = 18/253 (7%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T N +++ LCK+   +        M+ + +  ++VTYN+LI+ +C      EA  L 
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLL 315

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
                RG++  ++T+N I+  LCK  K D A  +L  M+Q G+ P+A        Y  L+
Sbjct: 316 NSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNA------ATYNTLL 369

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             +C+   +  A+E+   ++R G++P++V+++  I  L  +  + +A   F +ME  G+ 
Sbjct: 370 VEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSII--------VDLL 242
           P+ VI+T L+  F R    S  +++   M  R    +V+ Y + L+ +         D+L
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 243 VKNEISLNSIPQF 255
               +    +P F
Sbjct: 490 FNEMVERGMVPDF 502



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 117/237 (49%), Gaps = 6/237 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y+ ++    +   + +  E F  ++ + ++ ++   N L+ G       + A  ++ E++
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G++ +V T N++++ LCK+RK +     L  M   GV  D      IV Y  LI+  C
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFAD------IVTYNTLINAYC 303

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           + G ++ A +L  S +  G+ P ++TYN  ++ LC   + D+A D+ ++M   G+ PN  
Sbjct: 304 REGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAA 363

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
            + TL+    R++   +  E+   M +R V+P     S ++ +L +N     ++  F
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 63/107 (58%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ +YNT+IDG  KE  ++KA  L  +M+   +  N++TYN +++GFC      EAE +
Sbjct: 640 PDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQV 699

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             +M++ G+  D  T++ +++       M EA R  D M+Q G+ PD
Sbjct: 700 LRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTYN +ID LC  G +  A +L  +M+      + VTYN++I   C      EAE
Sbjct: 438 CTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAE 497

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M  +G+    VTFN ++D LCK +++D+AT L++ M++ G++P      N + Y 
Sbjct: 498 EVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQP------NNITYN 551

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++   CK G +K A ++ +++T  G   +VVTY   I+ LC   +   A  L   M +K
Sbjct: 552 SILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIK 611

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G+ P    +  ++ S  R+N     + L R M +    P A    I+   L + 
Sbjct: 612 GIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRG 665



 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 7/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +TVTYNTIID LCK+  +++A+E+F QM  + I+ + VT+N+LI G C A   ++A 
Sbjct: 473 CPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDAT 532

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M+  GLQ + +T+N I+   CK   + +A  +L+ M   G       EI++V YG
Sbjct: 533 ELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGF------EIDVVTYG 586

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK G+ + A +L + +   G+ P    YN  I +L     +  A +LF +M   
Sbjct: 587 TLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEV 646

Query: 192 GVAPNCVIFTTLMPSFIRKNETSK-VIELLRSMDKRNVMPYASILSIIVDLLV 243
           G  P+ + +  +  S  R     K   + L  M  +  MP  S   ++ + L+
Sbjct: 647 GEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLL 699



 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+N +I+ LCK G       LF +MK     P+ VTYN LI   C       A  L
Sbjct: 405 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDL 464

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   G     VT+N I+D LCK  +++EA  + D M   G+   A      V +  L
Sbjct: 465 LNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSA------VTFNTL 518

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK  ++ +A EL + + + GL PN +TYN  +   C    + KA D+   M   G 
Sbjct: 519 IDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGF 578

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             + V + TL+    +   T   ++LLR M  + + P     + ++  L +
Sbjct: 579 EIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFR 629



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 8/234 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VT N +I+G CK G V+ A     Q   +   P+ VTYN+ +HG C     + A 
Sbjct: 263 CSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHAL 322

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G   DV T+N +++ L KN ++DEA  +++ M+  G  PD         + 
Sbjct: 323 KVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDT------TTFN 376

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  L    +L+ A +L++ LT  GL P+V T+NI I+ALC          LF +M+  
Sbjct: 377 TLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSS 436

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI-LSIIVDLLVK 244
           G  P+ V +  L+       +    ++LL  M+  N  P +++  + I+D L K
Sbjct: 437 GCTPDEVTYNILIDHLCSMGKLGNALDLLNEMES-NGCPRSTVTYNTIIDALCK 489



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 8/230 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P+  T+ T++ G  +EG ++ A  +  +M +   +P  VT N LI+G+C      +A  Y
Sbjct: 230 PDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGY 289

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  E+ D G + D VT+N  +  LC+N  +  A +++DLM+Q G  PD F       Y  
Sbjct: 290 IQQEIAD-GFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVF------TYNT 342

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+ L K G+L  A+ +   +   G +P+  T+N  I AL +  ++++A DL  ++ VKG
Sbjct: 343 VINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKG 402

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           ++P+   F  L+ +  +  +    I L   M      P     +I++D L
Sbjct: 403 LSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHL 452



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N   G   +P+ VT NT+I  LC+   V  A  +  +M    + P+  T+ +L+ GF   
Sbjct: 186 NEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEE 245

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A  +  +MM+ G     VT NV+++  CK  ++++A   +   I  G  PD    
Sbjct: 246 GSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQ--- 302

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
              V Y   + GLC+ G + +A ++   + + G  P+V TYN  I+ L  + ++D+A  +
Sbjct: 303 ---VTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGI 359

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M  +G  P+   F TL+ +   +N   + ++L R +  + + P     +I+++ L K
Sbjct: 360 VNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCK 419



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 5/197 (2%)

Query: 45  ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
           E+  P+   Y  ++     A   +  E L  EM   G Q   V     ++   + R+ D+
Sbjct: 83  EDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDD 142

Query: 105 ATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           A   +DL++   +  D F  + + V +  L++ L +  KLK    +   +T  G+ P+VV
Sbjct: 143 A---VDLVLNQ-LDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVV 198

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T N  I ALC   Q+  A  +  +M   GVAP+   FTTLM  FI +      + +   M
Sbjct: 199 TLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKM 258

Query: 224 DKRNVMPYASILSIIVD 240
            +    P    ++++++
Sbjct: 259 MEAGCSPTGVTVNVLIN 275



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY T+I+GLCK G    A +L   M+ + I P    YN +I      N+  +A  LF
Sbjct: 581 DVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLF 640

Query: 75  IEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            EM + G   D +T+ ++   LC+    + EA   L  M+  G  P+ F    ++A G L
Sbjct: 641 REMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPE-FSSFRMLAEGLL 699

Query: 134 IDGL 137
             G+
Sbjct: 700 NLGM 703


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+    D NE   L   M 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALIS 354



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A     +MI+  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL   + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 VPSVV 417



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  +  GV  +P+  TY+ +I+GLCKE  +D A ELF +M D  + PN VT+ +LI G
Sbjct: 193 LKNAMQASGV--QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     + A  ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  + Y  LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   
Sbjct: 311 K------ITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  +  +M   G+      +T ++  F +K +     +L++ M +   +P
Sbjct: 365 AEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP 414



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 113/211 (53%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +++   L   M+   + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +  + V +T L+    ++  +    ++LR M
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREM 372



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 6/187 (3%)

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           +N L+H FC   +   A+ +F  +   GL+  VV+FN +M+   K   ++E  RL + M 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             GV+PD +       Y  LI+GLCK  K+ +A EL   +   GL+PN VT+   I   C
Sbjct: 199 ASGVQPDVY------TYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            + ++D A +++  M  + ++P+ + + TL+    +K +  +  +L+  M  + + P   
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 234 ILSIIVD 240
             + ++D
Sbjct: 313 TYTTLID 319



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M   CK  ++  A  + D + + G+RP      ++V++  
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K+G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M   G
Sbjct: 177 LMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 52/112 (46%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      +     G   ++  +NI +H+ C + ++  A  +F  +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +I+  + ++   L  +M    V P     S++++ L K
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCK 218



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 33/72 (45%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    +   + TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGYVPSVVT 418


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 129/247 (52%), Gaps = 14/247 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+V  P+  TY  +ID  CK G + +A++ F +M  +   PNVVTY +LIH +  A    
Sbjct: 490 GIV--PSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMP 547

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---DAF--- 122
            A+ LF  M+  G + +VVT+  ++D  CK  ++++A ++   M +G +     D +   
Sbjct: 548 VADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARM-RGDIESSDMDKYFKL 606

Query: 123 ----CE-INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
               CE  N++ YG L+DGLCK  ++K A EL  ++   G  PN + Y+  I   C   +
Sbjct: 607 DHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGK 666

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +  A ++F  M  +G +PN   +++ +    + N    V+++L  M + +  P   I + 
Sbjct: 667 LQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTE 726

Query: 238 IVDLLVK 244
           +VD L K
Sbjct: 727 MVDGLCK 733



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 103/191 (53%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY  ++DGLCK   V +A EL   M      PN + Y+++I GFC      +A+ +
Sbjct: 614 PNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEV 673

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M +RG   ++ T++  +D L K+ ++D   ++L  M++    P      N+V Y  +
Sbjct: 674 FTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTP------NVVIYTEM 727

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DGLCKIGK   A +L   +   G  PNVVTY   I       ++++  +LF DM  KG 
Sbjct: 728 VDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGC 787

Query: 194 APNCVIFTTLM 204
           APN + +  L+
Sbjct: 788 APNFITYRVLI 798



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 124/237 (52%), Gaps = 14/237 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  ++DGLCK G  D+A +L L+M+++  NPNVVTY ++I GF  +    +  
Sbjct: 717 CTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCL 776

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M  +G   + +T+ V+++  C N  +DEA +LLD M Q       +   +I+++ 
Sbjct: 777 ELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQ------TYWPKHILSHR 830

Query: 132 CLIDGLCK--IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            +I+G  +  I  +    ELS++ +    +P    Y I I       +++ A DL  ++ 
Sbjct: 831 KIIEGFSQEFITSIGLLDELSENES----VPVDSLYRILIDNYIKAGRLEVALDLLEEIS 886

Query: 190 V--KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
                   N  ++ +L+ +    ++  K +EL  SM  +NV+P  SIL  ++  L+K
Sbjct: 887 SSPSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPELSILVHLIKGLIK 943



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 115/269 (42%), Gaps = 51/269 (18%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  ++ G  ++G + + K +   M  E   PN   +NSLIH +C + D + A 
Sbjct: 310 CIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAY 369

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNR------------------------------- 100
            LF +M+  G Q   + +N+ +  +C N                                
Sbjct: 370 KLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVS 429

Query: 101 ----------KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150
                     K D+A +++  M+  G  PD         Y  +I  LC   K++ A  L 
Sbjct: 430 NFARCLCGAGKFDQAFKIICEMMGKGFVPDD------STYSKVIGFLCDASKVEKAFSLF 483

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           + + R G++P+V TY I I + C    + +A   F +M  KG  PN V +T L+ ++++ 
Sbjct: 484 EEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKA 543

Query: 211 NETSKVIELLRSM----DKRNVMPYASIL 235
            +     EL   M     K NV+ Y +++
Sbjct: 544 KQMPVADELFEMMLLEGCKPNVVTYTALI 572



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 8/227 (3%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++   C+ G+ + A E   ++KD    P+  TYN+LI  F  A+  + A  +  EM+ 
Sbjct: 180 NFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLS 239

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
                D  T +     LCK  K  EA  L+D        PD       V Y  ++ GLC+
Sbjct: 240 YAFVMDRYTLSCFAYSLCKGGKCREAFDLIDE--AEDFVPDT------VFYNRMVSGLCE 291

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
               + A ++   +  +  +PNVVTY I +       Q+ +   +   M  +G  PN  I
Sbjct: 292 ASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREI 351

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           F +L+ ++ +  + S   +L + M K    P   + +I +  +  NE
Sbjct: 352 FNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNE 398


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 14/235 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP----NVVTYNSLIHGFCYANDGNE 69
           P+ V Y  +IDG C+ G +  A    L+M+DE +      +VVTYN+ ++G C      +
Sbjct: 430 PDNVIYTILIDGFCRNGALSDA----LKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFAD 485

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ LF EM++RG+  D  TF  ++   CK+  MD+A  L + M++  ++PD       V 
Sbjct: 486 ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDK------VT 539

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LIDG CK G++  A+EL   + R  ++P+ ++Y   ++  C+   + +A +L   M 
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQML 599

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            KG+ PN V   TL+  + R  +  K  E L  M    ++P +   + ++D  +K
Sbjct: 600 EKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLK 654



 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  +TYN I+ GLCK G  D+AK++ ++M    + PN  TYN+L+   C  ++  EA+ 
Sbjct: 324 EPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQE 383

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM  RG+  D+V+F+ ++  L +N  + +A      M + G+ PD       V Y  
Sbjct: 384 IFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDN------VIYTI 437

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C+ G L +A ++   +   G   +VVTYN  ++ LC  +    A  LF +M  +G
Sbjct: 438 LIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERG 497

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+   FTTL+  + +     K + L  +M + N+ P     + ++D   K
Sbjct: 498 MVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCK 549



 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 123/218 (56%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTYNT+IDG CK G + +AKEL+  M  ++I P+ ++Y ++++GFC +    EA  
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+++G++ ++VT N ++   C++  M +A   L  MI  G+ PD+F      +Y  
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSF------SYNT 647

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  K   L+ A  L   + + GL  N++TYN+ ++  C + +M +A  +   M   G
Sbjct: 648 LIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIG 707

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +++L+   + ++   +       M +R ++P
Sbjct: 708 INPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 10/228 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTYNT ++GLCK+     A  LF +M +  + P+  T+ +LI G+C   + ++A 
Sbjct: 463 CFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKAL 522

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M+   L+ D VT+N ++D  CK  +M  A  L D MI+  + PD       ++YG
Sbjct: 523 NLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDH------ISYG 576

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +++G C  G L  A  L   +   G+ PN+VT N  I   C    M KA++    M   
Sbjct: 577 TVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN 636

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           G+ P+   + TL+  ++++    K   L+  M+KR    N++ Y  IL
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLIL 684



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+ T+I G CK+G +DKA  LF  M   N+ P+ VTYN+LI GFC A +   A+ L
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+ + +  D +++  +++  C +  + EA  L D M++ G+RP      N+V    L
Sbjct: 560 WDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRP------NLVTCNTL 613

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G +  A E    +   G++P+  +YN  I     +  ++KA  L  +ME +G+
Sbjct: 614 IKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGL 673

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             N + +  ++  F  + +  +  ++LR M +  + P  +  S +++
Sbjct: 674 QFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++ GL + G+VD A E++ ++    I  NV T N +++  C         +   +M  
Sbjct: 226 NKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEG 285

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           +G+ +D+VT+N +++  C+   ++EA +LL+     G+ P       ++ Y  ++ GLCK
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEP------GLLTYNAILYGLCK 339

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           IGK   A+++   + + GL PN  TYN  +  +C  + + +A ++F +M  +GV P+ V 
Sbjct: 340 IGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVS 399

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           F++L+    R     + +   R M++  ++P   I +I++D   +N
Sbjct: 400 FSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRN 445



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 124/253 (49%), Gaps = 18/253 (7%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T N +++ LCK+   +        M+ + +  ++VTYN+LI+ +C      EA  L 
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLL 315

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
                RG++  ++T+N I+  LCK  K D A  +L  M+Q G+ P+A        Y  L+
Sbjct: 316 NSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNA------ATYNTLL 369

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             +C+   +  A+E+   ++R G++P++V+++  I  L  +  + +A   F +ME  G+ 
Sbjct: 370 VEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILSII--------VDLL 242
           P+ VI+T L+  F R    S  +++   M  R    +V+ Y + L+ +         D+L
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 243 VKNEISLNSIPQF 255
               +    +P F
Sbjct: 490 FNEMVERGMVPDF 502



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 118/239 (49%), Gaps = 6/239 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + Y+ ++    +   + +  E F  ++ + ++ ++   N L+ G       + A  ++ E
Sbjct: 188 LIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGE 247

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           ++  G++ +V T N++++ LCK+RK +     L  M   GV  D      IV Y  LI+ 
Sbjct: 248 VVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFAD------IVTYNTLINA 301

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            C+ G ++ A +L  S +  G+ P ++TYN  ++ LC   + D+A D+ ++M   G+ PN
Sbjct: 302 YCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPN 361

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
              + TL+    R++   +  E+   M +R V+P     S ++ +L +N     ++  F
Sbjct: 362 AATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 63/107 (58%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ +YNT+IDG  KE  ++KA  L  +M+   +  N++TYN +++GFC      EAE +
Sbjct: 640 PDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQV 699

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             +M++ G+  D  T++ +++       M EA R  D M+Q G+ PD
Sbjct: 700 LRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 116/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYN +++  C  G ++KA++L  +M+   +NP+  +YN L+ G C  +  ++A 
Sbjct: 399 CEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAF 458

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               + M+ G   D V+ N+++D  CK +K+  A  L   M   G++ DA      V YG
Sbjct: 459 AFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADA------VTYG 512

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GL  +G    A EL + +  A + PNV  YNI +H LC      +A  +F  M  K
Sbjct: 513 TLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQK 572

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V+P+ V F TL+    +++   + + L + M  R V P
Sbjct: 573 EVSPDTVTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEP 611



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 10/237 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+    N  I  LCK+  +  A ++  +M+ +  +P+VVTY +++ G C      EA 
Sbjct: 259 CSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAI 318

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+ EM+ R L+ DV +   ++  LCKN K+DEA  L   M+   +      E+++  Y 
Sbjct: 319 GLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDI------ELSVCIYN 372

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G  + G +  A ++   +   G  P++VTYNI ++  C    M+KA  L   ME  
Sbjct: 373 ALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETS 432

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS--IIVDLLVKNE 246
           GV P+   +  L+    + ++  K    +   D   V  +   +S  I++D   K +
Sbjct: 433 GVNPDRYSYNQLLKGLCKTHQLDKAFAFVS--DHMEVGGFCDTVSCNILIDAFCKTK 487



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  +   +I GLCK   VD+A EL  +M   +I  +V  YN+LI GF  A   ++A  
Sbjct: 330 KPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYK 389

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M   G + D+VT+N++++  C    M++A +L+  M   GV PD +      +Y  
Sbjct: 390 IISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRY------SYNQ 443

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLCK  +L  A          G   + V+ NI I A C  +++  A +LF +M  KG
Sbjct: 444 LLKGLCKTHQLDKAFAFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKG 503

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V + TL+         +   EL   M    + P  ++ +I++  L K
Sbjct: 504 MQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCK 555



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 6/213 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY+  I  LC+   ++  +EL + M     +P++   N  I+  C  N   +A  +  +M
Sbjct: 230 TYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKM 289

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             +G   DVVT+  ++  LC N+K  EA  L + M++  ++PD F      + G LI GL
Sbjct: 290 RTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVF------SCGALIFGL 343

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK  K+  A EL+  +    +  +V  YN  I        +DKA+ +   M   G  P+ 
Sbjct: 344 CKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDI 403

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V +  L+  +       K  +L+R M+   V P
Sbjct: 404 VTYNILLNHYCTIGMMEKAEKLIRKMETSGVNP 436



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + VTY T+I+GL   G+ + A+ELF QM +  I+PNV  YN ++H  C       A+ 
Sbjct: 505 QADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQT 564

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M+ + +  D VTFN ++  L K  +  EA  L   M   GV PD       + +  
Sbjct: 565 IFSHMIQKEVSPDTVTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDT------LTFKY 618

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLM 159
           LI GL   GK   A E+ + +   G++
Sbjct: 619 LISGLLDEGKSTLAYEVWEYMMENGII 645



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 6/194 (3%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           E   ++K + +  +   Y  L+ G+  A   +     F EM+  G +   V +N  +  L
Sbjct: 144 EFLGRVKSQGVALHRSLYRILLSGYVRAGKFDSVIETFDEMVMSGCREFGVDYNRYIGVL 203

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            KN   D   +  D+ +  G     FC +    Y   I  LC+  +++  +EL   + + 
Sbjct: 204 VKNCCFDLVEKYYDMALAKG-----FC-LTPFTYSRWISALCQSNRIELVQELLVDMDKL 257

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P++   NI I+ LC   ++  A  +   M  KG +P+ V + T++       + ++ 
Sbjct: 258 GCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEA 317

Query: 217 IELLRSMDKRNVMP 230
           I L   M KR++ P
Sbjct: 318 IGLWEEMVKRDLKP 331



 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 22/186 (11%)

Query: 66  DGNEAEYLFIEMMDR----GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-- 119
           DGN A  L  E + R    G+      + +++    +  K D      D M+  G R   
Sbjct: 136 DGNFA--LLSEFLGRVKSQGVALHRSLYRILLSGYVRAGKFDSVIETFDEMVMSGCREFG 193

Query: 120 -DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
            D    I ++   C  D + K   +  A+         G      TY+  I ALC   ++
Sbjct: 194 VDYNRYIGVLVKNCCFDLVEKYYDMALAK---------GFCLTPFTYSRWISALCQSNRI 244

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASI 234
           +   +L +DM+  G +P+       +    ++N     ++++  M  +   P    Y ++
Sbjct: 245 ELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTV 304

Query: 235 LSIIVD 240
           +S + D
Sbjct: 305 VSGLCD 310


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYNTII G+CKEG VD+A E+   ++ +   P+V++YN L+          E E 
Sbjct: 256 KPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEK 315

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M       +VVT+++++  LC++ K++EA  LL LM + G+ PDA+      +Y  
Sbjct: 316 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY------SYDP 369

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C+ G+L  A E  +++   G +P++V YN  +  LC + + D+A ++F  +   G
Sbjct: 370 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 429

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
            +PN   + T+  +     +  + + ++  M    + P    Y S++S +
Sbjct: 430 CSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCL 479



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN +I  LC  G +D A ++  Q+  +N  P V+TY  LI         +EA  L
Sbjct: 187 PDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 246

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             EM+ RGL+ D+ T+N I+  +CK   +D A  ++ +L ++G       CE ++++Y  
Sbjct: 247 LDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKG-------CEPDVISYNI 299

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L   GK +   +L   +      PNVVTY+I I  LC D ++++A +L   M+ KG
Sbjct: 300 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 359

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+   +  L+ +F R+      IE L +M     +P     + ++  L KN
Sbjct: 360 LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKN 412



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YN +I+G CK   +D A  +  +M+ ++ +P+ VTYN +I   C     + A  
Sbjct: 151 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 210

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++    Q  V+T+ ++++       +DEA +LLD M+  G++PD F       Y  
Sbjct: 211 VLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMF------TYNT 264

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G+CK G +  A E+ ++L   G  P+V++YNI + AL N  + ++   L   M  + 
Sbjct: 265 IIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 324

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             PN V ++ L+ +  R  +  + + LL+ M ++ + P A
Sbjct: 325 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDA 364



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 6/233 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F   C PN VTY+ +I  LC++G +++A  L   MK++ + P+  +Y+ LI  FC     
Sbjct: 321 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 380

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A      M+  G   D+V +N ++  LCKN K D+A  +   + + G  P      N 
Sbjct: 381 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP------NS 434

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            +Y  +   L   G    A  +   +   G+ P+ +TYN  I  LC +  +DKA +L +D
Sbjct: 435 SSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVD 494

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           M      P+ V +  ++  F + +     I++L SM      P  +  +++++
Sbjct: 495 MRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIE 547



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 7/174 (4%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           + H  C + +  E+ +L   M+ +G   DV+    ++      R + +A R+++++ + G
Sbjct: 91  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG 150

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
            +PD F      AY  LI+G CK+ ++ +A  +   +      P+ VTYNI I +LC+  
Sbjct: 151 -QPDVF------AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 203

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++D A  +   +      P  + +T L+ + + +    + ++LL  M  R + P
Sbjct: 204 KLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKP 257



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           I    C++    E+  LL+ M++ G  PD      ++    LI G   +  +  A  + +
Sbjct: 91  IFHRSCRSGNYIESLHLLETMVRKGYNPD------VILCTKLIKGFFTLRNVPKAVRVME 144

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            L + G  P+V  YN  I+  C   ++D A  +   M  K  +P+ V +  ++ S   + 
Sbjct: 145 ILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 203

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +    +++L  +   N  P     +I+++
Sbjct: 204 KLDLALKVLDQLLSDNCQPTVITYTILIE 232


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 6/241 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            +G  C P  V YN +IDG C+ G V +   L  +M+ + I P VVTY ++IH     +D
Sbjct: 302 RWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSD 361

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             + E L  EM +RGL  +V  +N ++  LCK R   +A  +L+ M+     PD      
Sbjct: 362 LTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPD------ 415

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V +  LI   C+ G ++ A +L +   R  L PN ++Y   IH  C   ++  A DL +
Sbjct: 416 VVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLV 475

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +M  +G  P+ V    L+   +   +  + + +   M +R VMP A+I ++++  L K  
Sbjct: 476 EMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKR 535

Query: 247 I 247
           +
Sbjct: 536 M 536



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN +I GLCK+  +  AK L ++M ++ + P+   Y +LI GF  ++  ++A  +
Sbjct: 519 PDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKI 578

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M ++G   D+V +N ++   CK+  M+EA   +  M + G  PD F       Y  L
Sbjct: 579 FEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEF------TYTTL 632

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K G +K A      + +    PN+VTY   I   CN    D A  LF  M+ +G+
Sbjct: 633 IDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGL 692

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
            PN V +T L+ S  +K++  +       M   +  P  + +  +V+ L 
Sbjct: 693 FPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLT 742



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN ++Y  +I G C  G V  A +L ++M      P+VVT  +LIHG   +   +EA  
Sbjct: 448 EPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALM 507

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M +R +  D   +NV++  LCK R +  A  LL  M++  V+PD F       Y  
Sbjct: 508 VREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKF------VYTT 561

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  +  KL +AR++ + +   G   ++V YN  I   C    M++A      M   G
Sbjct: 562 LIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVG 621

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
             P+   +TTL+  + +K +    +  L  M KR    N++ YAS++
Sbjct: 622 CIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLI 668



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 119/306 (38%), Gaps = 64/306 (20%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+NT+I   C+EG V++A +L  +     + PN ++Y  LIHGFC   +   A  L
Sbjct: 414 PDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDL 473

Query: 74  FIEMMDRGLQSDVVT-----------------------------------FNVIMDELCK 98
            +EM+ RG   DVVT                                   +NV++  LCK
Sbjct: 474 LVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCK 533

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEI-----------------------------NIVA 129
            R +  A  LL  M++  V+PD F                                +IVA
Sbjct: 534 KRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVA 593

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I G CK G +  A     S+ + G +P+  TY   I        +  A     DM 
Sbjct: 594 YNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMM 653

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
            +   PN V + +L+  +     T     L  SM    + P     ++++  L K + ++
Sbjct: 654 KRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAI 713

Query: 250 NSIPQF 255
            +   F
Sbjct: 714 QAAAYF 719



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 117/258 (45%), Gaps = 25/258 (9%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P+  TY T+IDG  K+G +  A      M      PN+VTY SLI G+C   + + 
Sbjct: 620 VGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDS 679

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           AE LF  M   GL  +VV + V++  L K  K  +A    + M+         C  N   
Sbjct: 680 AEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLN------HCSPNDAT 733

Query: 130 YGCLIDGL--CKIGKL-KNARELSQSLTRA------------GLMPNVVTYNITIHALCN 174
              L++GL  C+ G +  N  +  Q+  ++            GL P +  YN  I +LC 
Sbjct: 734 MHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCR 793

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN----VMP 230
              + KA +L   M  KG  P+ V F +L+  F    ++ K    L +  +++    +  
Sbjct: 794 HNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGKSGKWRSALPNEFQQDEFEIICK 853

Query: 231 YASILSIIVDLLVKNEIS 248
           Y ++L+  V   V++E+S
Sbjct: 854 YMTLLNQHVMSPVRDEVS 871



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 8/185 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   Y T+IDG  +   +  A+++F  M+++    ++V YN++I G+C +   NEA  
Sbjct: 553 QPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVM 612

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYG 131
               M   G   D  T+  ++D   K   +  A R L D+M +        C+ NIV Y 
Sbjct: 613 CMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKR-------RCKPNIVTYA 665

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C IG   +A  L  S+   GL PNVV Y + I +L   ++  +A   F  M + 
Sbjct: 666 SLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLN 725

Query: 192 GVAPN 196
             +PN
Sbjct: 726 HCSPN 730



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 62/125 (49%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLC  G+++  R L ++    G +P  V YN+ I   C    + +   L  +ME+KG
Sbjct: 282 MVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKG 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P  V +  ++    RK++ +K+  LL  M +R + P   I + ++  L K   +  ++
Sbjct: 342 IMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQAL 401

Query: 253 PQFNR 257
              N+
Sbjct: 402 AVLNQ 406


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 11/242 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY T++D  CK G +++A+  F +M+ +   PNVVTY +LIH +      + A  +
Sbjct: 155 PDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEI 214

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR-PDA----------F 122
           F  M+  G   ++VT+  ++D  CK  + ++A ++   M    V  PD            
Sbjct: 215 FEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSEL 274

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
            E N+V YG L+DGLCK  K+K AR+L ++++  G  PN + Y+  I   C   ++D+A 
Sbjct: 275 KEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQ 334

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           ++F  M   G +PN   +++L+    +       +++L  M + +  P   I + +VD L
Sbjct: 335 EVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGL 394

Query: 243 VK 244
            K
Sbjct: 395 CK 396



 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 6/192 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY  ++DGLCK   V +A++L   M  E   PN + Y++LI GFC     +EA+ 
Sbjct: 276 EPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQE 335

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M+  G   +V T++ ++D+L K++++D A ++L  M++    P      N+V Y  
Sbjct: 336 VFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAP------NVVIYTE 389

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DGLCK+GK   A  L   +   G  PNVVTY   I       ++D+  +L   M  KG
Sbjct: 390 MVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKG 449

Query: 193 VAPNCVIFTTLM 204
            APN + +  L+
Sbjct: 450 CAPNFITYRVLI 461



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 119/246 (48%), Gaps = 23/246 (9%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +I    K   + +A E+F  M      PN+VTY +LI G C A +  +A 
Sbjct: 188 CAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKAC 247

Query: 72  YLFIEM----------------MDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
            ++  M                +D  L + +VVT+  ++D LCK  K+ EA  LL+ M  
Sbjct: 248 QIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSL 307

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            G      CE N + Y  LIDG CK+GKL  A+E+   +   G  PNV TY+  I  L  
Sbjct: 308 EG------CEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFK 361

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
           D+++D A  +   M     APN VI+T ++    +  +T +   L+  M+++   P    
Sbjct: 362 DKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVT 421

Query: 235 LSIIVD 240
            + ++D
Sbjct: 422 YTAMID 427



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 111/271 (40%), Gaps = 48/271 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ + +N+++   C+ G    A +L  +M      P  V YN LI G C   D    E
Sbjct: 7   CYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSME 66

Query: 72  YLFI-----------------------------------------EMMDRGLQSDVVTFN 90
            + +                                         EMM +G   D  T++
Sbjct: 67  VIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYS 126

Query: 91  VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150
            ++  LC   K+++A +L   M + G+ PD +       Y  L+D  CK+G ++ AR   
Sbjct: 127 KVIGYLCNASKVEKAFQLFQEMKRNGITPDVY------TYTTLLDRFCKVGLIEQARNWF 180

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
             + + G  PNVVTY   IHA     ++ +A+++F  M   G  PN V +T L+    + 
Sbjct: 181 DEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKA 240

Query: 211 NETSKVIELLRSMDKRNV-MPYASILSIIVD 240
            ET K  ++   M    V +P   I   IVD
Sbjct: 241 GETEKACQIYARMKNDKVDIPDVDIYFRIVD 271



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 30/245 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  ++DGLCK G  D+A  L L M+++   PNVVTY ++I GF  A   +   
Sbjct: 380 CAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCL 439

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG--------------GV 117
            L   M  +G   + +T+ V+++  C    +D+A +LL+ M Q               G 
Sbjct: 440 ELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGF 499

Query: 118 RPDAFCEINIVA-------------YGCLIDGLCKIGKLKNARELSQSLTR-AGLMPNVV 163
             +    + ++A             Y  LID   K G+L+ A EL + L+  +    N  
Sbjct: 500 SHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQN-- 557

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   I +L    ++DKA  L+ DM  +G  P   +   L+   +R  +  + ++L  S+
Sbjct: 558 TYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSDSI 617

Query: 224 DKRNV 228
            + ++
Sbjct: 618 CQMDI 622



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 114/286 (39%), Gaps = 48/286 (16%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GVV   N V        LC  G  +KA  +  +M  +   P+  TY+ +I   C A+ 
Sbjct: 80  EMGVVL--NKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASK 137

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---- 122
             +A  LF EM   G+  DV T+  ++D  CK   +++A    D M Q G  P+      
Sbjct: 138 VEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTA 197

Query: 123 -------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
                                    C  NIV Y  LIDG CK G+ + A ++   +    
Sbjct: 198 LIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDK 257

Query: 158 L-----------------MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           +                  PNVVTY   +  LC   ++ +A DL   M ++G  PN +I+
Sbjct: 258 VDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIY 317

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             L+  F +  +  +  E+   M      P     S ++D L K++
Sbjct: 318 DALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDK 363



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 8/237 (3%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            +  G  C PN  TY+++ID L K+  +D A ++  +M + +  PNVV Y  ++ G C  
Sbjct: 338 TKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKV 397

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +EA  L + M ++G   +VVT+  ++D   K  ++D    LL LM   G  P     
Sbjct: 398 GKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAP----- 452

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N + Y  LI+  C  G L +A +L + + +     ++  Y   I       +   +  L
Sbjct: 453 -NFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGF--SHEFVASLGL 509

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             ++   G  P   ++  L+ +FI+       +EL   +   +     + +S+I  L
Sbjct: 510 LAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQNTYVSLIESL 566



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 12/210 (5%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M  E   P+ + +NSL+H +C + D   A  L  +M+  G Q   V +N+++  +C    
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 102 MDE------ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           +        A R  + M++ GV      ++N+  +      LC IGK + A  + + +  
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGV---VLNKVNVCNF---TRCLCCIGKFEKAYNVIREMMS 115

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G +P+  TY+  I  LCN  +++KA  LF +M+  G+ P+   +TTL+  F +     +
Sbjct: 116 KGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQ 175

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLLVKN 245
                  M +    P     + ++   +K 
Sbjct: 176 ARNWFDEMQQDGCAPNVVTYTALIHAYLKT 205


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 122/218 (55%), Gaps = 9/218 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  TYNT++ GLC EG +D+A  +  +M+   + P+VVTYN+LI G C+   G+   +  
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDG-CFKWRGSTEGFRL 194

Query: 75  IEMMDR--GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +E M    G++ + VT N+++    K  K++EA+  +  M++ GV PD F       Y  
Sbjct: 195 LEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCF------TYNT 248

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G CK GKL  A  +   + R GL P++ T N  +H LC +++ ++A++L +    +G
Sbjct: 249 MINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRG 308

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              + V + TL+  + +  +  K ++L   M KR ++P
Sbjct: 309 YILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVP 346



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY T+I G  K    DKA +L+ +MK   I P+VV+YN LI G C +   ++A    
Sbjct: 312 DEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKL 371

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            E++++GL  D V+ N+I+   C    +D+A +  + M+    +PD F   NI     L+
Sbjct: 372 NELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTR-NI-----LL 425

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLC++  L+ A +L  S        +VVTYN  I  LC + ++D+A DL  DMEVK   
Sbjct: 426 RGLCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFE 485

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           P+   +  ++ +      T +  + +  + +
Sbjct: 486 PDQYTYNAIVRALTHAGRTEEAEKFMSKLSE 516



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEAEY 72
           P+ VTYNT+IDG  K     +   L  +MK    + PN VT+N ++  F      NEA  
Sbjct: 170 PDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASD 229

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             ++M++ G+  D  T+N +++  CK  K+ EA R++D M + G++PD  C +N      
Sbjct: 230 AVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPD-ICTLN-----T 283

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++  LC   K + A EL+    + G + + VTY   I      +Q DKA  L+ +M+ +G
Sbjct: 284 MLHTLCMEKKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRG 343

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V +  L+       +T + ++ L  + ++ ++P     +II+
Sbjct: 344 IVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIII 390



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 104/186 (55%), Gaps = 6/186 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VT+N ++    KEG +++A +  ++M +  ++P+  TYN++I+GFC A    EA  
Sbjct: 205 EPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFR 264

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM  +GL+ D+ T N ++  LC  +K +EA    +L ++   R     E   V YG 
Sbjct: 265 MMDEMARKGLKPDICTLNTMLHTLCMEKKPEEA---YELTVKARKRGYILDE---VTYGT 318

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K  +   A +L + + + G++P+VV+YN  I  LC   + D+A D   ++  KG
Sbjct: 319 LIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKG 378

Query: 193 VAPNCV 198
           + P+ V
Sbjct: 379 LVPDEV 384



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 21/223 (9%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  P+ V+ N II G C EG VDKA +   +M   +  P++ T N L+ G C  + 
Sbjct: 376 EKGLV--PDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDM 433

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A  LF   + +    DVVT+N ++  LCK  ++DEA  L+  M      PD +    
Sbjct: 434 LEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQY---- 489

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV------------VTYNITIHALCN 174
              Y  ++  L   G+ + A +    L+  G                 + Y+  I  LC 
Sbjct: 490 --TYNAIVRALTHAGRTEEAEKFMSKLSETGQAVKTHDTSQELDASSDIMYSQQISDLCT 547

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI-RKNETSKV 216
             +  +A  LF + E KGV+ N   +  LM  F+ R+   SKV
Sbjct: 548 QGKYKEAMKLFQESEQKGVSLNKYTYIKLMDGFLKRRKSISKV 590



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 110/231 (47%), Gaps = 6/231 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T NT++  LC E   ++A EL ++ +      + VTY +LI G+      ++A  
Sbjct: 275 KPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALK 334

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM  RG+   VV++N ++  LC + K D+A   L+ +++ G+ PD       V+   
Sbjct: 335 LWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDE------VSCNI 388

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C  G +  A +    +      P++ T NI +  LC  + ++KA  LF     K 
Sbjct: 389 IIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQ 448

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
            + + V + T++    ++    +  +L+  M+ +   P     + IV  L 
Sbjct: 449 NSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRALT 499



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 96/189 (50%), Gaps = 8/189 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           ++ G+V  P+ V+YN +I GLC  G  D+A +   ++ ++ + P+ V+ N +IHG+C+  
Sbjct: 340 KKRGIV--PSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEG 397

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++A     +M+    + D+ T N+++  LC+   +++A +L +  I           +
Sbjct: 398 MVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQ------NSV 451

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           ++V Y  +I  LCK G+L  A +L   +      P+  TYN  + AL +  + ++A    
Sbjct: 452 DVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRALTHAGRTEEAEKFM 511

Query: 186 LDMEVKGVA 194
             +   G A
Sbjct: 512 SKLSETGQA 520


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYNTII G+CKEG VD+A E+   ++ +   P+V++YN L+          E E 
Sbjct: 260 KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEK 319

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M       +VVT+++++  LC++ K++EA  LL LM + G+ PDA+      +Y  
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY------SYDP 373

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C+ G+L  A E  +++   G +P++V YN  +  LC + + D+A ++F  +   G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
            +PN   + T+  +     +  + + ++  M    + P    Y S++S +
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN +I  LC  G +D A ++  Q+  +N  P V+TY  LI         +EA  L
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             EM+ RGL+ D+ T+N I+  +CK   +D A  ++ +L ++G       CE ++++Y  
Sbjct: 251 MDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG-------CEPDVISYNI 303

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L   GK +   +L   +      PNVVTY+I I  LC D ++++A +L   M+ KG
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 363

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+   +  L+ +F R+      IE L +M     +P     + ++  L KN
Sbjct: 364 LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKN 416



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YN +I+G CK   +D A  +  +M+ ++ +P+ VTYN +I   C     + A  
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++    Q  V+T+ ++++       +DEA +L+D M+  G++PD F       Y  
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF------TYNT 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G+CK G +  A E+ ++L   G  P+V++YNI + AL N  + ++   L   M  + 
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             PN V ++ L+ +  R  +  + + LL+ M ++ + P A
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDA 368



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 6/233 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F   C PN VTY+ +I  LC++G +++A  L   MK++ + P+  +Y+ LI  FC     
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A      M+  G   D+V +N ++  LCKN K D+A  +   + + G  P      N 
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP------NS 438

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            +Y  +   L   G    A  +   +   G+ P+ +TYN  I  LC +  +D+A +L +D
Sbjct: 439 SSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVD 498

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           M      P+ V +  ++  F + +     I +L SM      P  +  +++++
Sbjct: 499 MRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIE 551



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 85/174 (48%), Gaps = 7/174 (4%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           + H  C + +  E+ +L   M+ +G   DV+    ++      R + +A R+++++ + G
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
            +PD F      AY  LI+G CK+ ++ +A  +   +      P+ VTYNI I +LC+  
Sbjct: 155 -QPDVF------AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++D A  +   +      P  + +T L+ + + +    + ++L+  M  R + P
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKP 261



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           I    C++    E+  LL+ M++ G  PD      ++    LI G   +  +  A  + +
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPD------VILCTKLIKGFFTLRNIPKAVRVME 148

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            L + G  P+V  YN  I+  C   ++D A  +   M  K  +P+ V +  ++ S   + 
Sbjct: 149 ILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +    +++L  +   N  P     +I+++
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIE 236


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 108/185 (58%), Gaps = 6/185 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P++ TY T+I+GLC+ G + +AKELF +M+ +  + +VVTY SLIHG C +N+ +EA 
Sbjct: 187 CQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAI 246

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM    ++ +V T++ +MD LCK     +A +LL++M +    P      N+V Y 
Sbjct: 247 GLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLP------NMVTYS 300

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GLCK  KL+ A E+   +   GL PN   Y   I  LC      +A +   +M + 
Sbjct: 301 TLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLG 360

Query: 192 GVAPN 196
           G++PN
Sbjct: 361 GISPN 365



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 9/237 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           RE G+    + V+ N +I  LCK +  VD A  +F +M +    P+  TY +LI+G C  
Sbjct: 147 RELGI--PSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRL 204

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            + +EA+ LF EM  +G  + VVT+  ++  LC++  +DEA  LL+ M +  + P+ F  
Sbjct: 205 GNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVF-- 262

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                Y  L+DGLCK G    A +L + + +   +PN+VTY+  I+ LC + ++ +A ++
Sbjct: 263 ----TYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEI 318

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
              M ++G+ PN  ++  ++          +    +  M    + P  +  S+ V +
Sbjct: 319 LDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRM 375



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A  +F +M+   + P    Y +++      N    A   + EM + G+ S VV+ N+++ 
Sbjct: 104 AIRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIK 163

Query: 95  ELCKNRK-MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
            LCKN++ +D A R+   M   G +PD++       YG LI+GLC++G +  A+EL + +
Sbjct: 164 ALCKNKETVDSALRIFQEMPNRGCQPDSY------TYGTLINGLCRLGNISEAKELFKEM 217

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
            + G   +VVTY   IH LC    +D+A  L  +M+   + PN   +++LM    +   +
Sbjct: 218 EQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHS 277

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           S+ ++LL  MDK++ +P     S +++ L K      ++   +R +
Sbjct: 278 SQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMR 323



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 36/210 (17%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY++++DGLCK G   +A +L   M  ++  PN+VTY++LI+G C      EA  
Sbjct: 258 EPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVE 317

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------------ 120
           +   M  +GL+ +   +  I+  LC      EA   +D M+ GG+ P+            
Sbjct: 318 ILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHN 377

Query: 121 ----AFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                 C                     + I  + CL+   CK G L  A  + + +   
Sbjct: 378 MVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMVLD 437

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           G +P+   +N+ I  L + +++ +A +  L
Sbjct: 438 GCIPDEGVWNVVIGGLWDRKKVREATEQLL 467



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++ GLC      +A +L+L M+   I+  + T++ L+  FC   D ++A  +  EM+
Sbjct: 376 HNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMV 435

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
             G   D   +NV++  L   +K+ EAT  L + +Q
Sbjct: 436 LDGCIPDEGVWNVVIGGLWDRKKVREATEQLLVELQ 471


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T   II+G CKEG +  A     +M++  ++PN+V +NSLI GF    D +  +  
Sbjct: 280 PNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEA 339

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M + G++ DVVTF+ IM+       MD+   + D M++ G+ PD      I A+  L
Sbjct: 340 LTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPD------IHAFSIL 393

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
             G  + G+ + A  L  ++ ++G+ PNVV +   I   C+  +M+ A  ++  M   G+
Sbjct: 394 AKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGI 453

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN   F TL+  +    E  K  ELL+ M+++ V P  S + ++ D
Sbjct: 454 CPNLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKSTIQLVAD 500



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 116/265 (43%), Gaps = 42/265 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELF-LQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           CKP T T+NT+I G    G  ++  +L  L  ++EN+ PN  T+NSLI  +C      EA
Sbjct: 172 CKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEA 231

Query: 71  EYLFIEMMDRGLQSDVVTFN-----------------------------------VIMDE 95
             +  +M   GLQ DVVT+N                                   +I++ 
Sbjct: 232 WNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIING 291

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
            CK  KM +A R L  M   GV P      N+V +  LI G   I       E    +  
Sbjct: 292 YCKEGKMKDALRFLYRMRNYGVHP------NLVIFNSLIKGFLDITDTDGVDEALTLMEE 345

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G+ P+VVT++  ++A  +   MDK  ++F DM   G+ P+   F+ L   ++R  E  K
Sbjct: 346 FGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEK 405

Query: 216 VIELLRSMDKRNVMPYASILSIIVD 240
              LL +M K  V P   I + I+ 
Sbjct: 406 AESLLTAMGKSGVQPNVVIFTTIIS 430



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 11/231 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP++V +N +I+   + G V +A ++F +MKD    P   T+N+LI G  Y N G   E 
Sbjct: 138 KPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKG--YGNAGMPEEC 195

Query: 73  L-FIEMM--DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           L  +++M  +  ++ +  TFN ++   C  +++ EA  ++  M   G++PD      +V 
Sbjct: 196 LKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPD------VVT 249

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L     + G+   A  +   +    +MPN  T  I I+  C + +M  A      M 
Sbjct: 250 YNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMR 309

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             GV PN VIF +L+  F+   +T  V E L  M++  V P     S I++
Sbjct: 310 NYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMN 360



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 23/201 (11%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EFGV  KP+ VT++TI++     G +DK +E+F  M    I P++  ++ L  G+  A +
Sbjct: 345 EFGV--KPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGE 402

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +AE L   M   G+Q +VV F  I+   C   KM+ A+R+ + M + G+ P      N
Sbjct: 403 PEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICP------N 456

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  +  LI G  +  + + A EL Q + + G+ P  V   I + A       D  H L L
Sbjct: 457 LKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAP--VKSTIQLVA-------DAWHALGL 507

Query: 187 DMEVKGV------APNCVIFT 201
             E K +      AP  +I T
Sbjct: 508 ANEAKRIKNDVEEAPKVMIST 528



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 98/216 (45%), Gaps = 7/216 (3%)

Query: 26  LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD 85
           L ++G   +A+ +F  + +E   P ++TY +L+              L  ++   GL+ D
Sbjct: 81  LIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPD 140

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
            V FN +++   ++  + EA ++   M   G +P          +  LI G    G  + 
Sbjct: 141 SVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKP------TTSTFNTLIKGYGNAGMPEE 194

Query: 146 ARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
             +L   +++   + PN  T+N  I A CN +++ +A ++   M   G+ P+ V + TL 
Sbjct: 195 CLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLA 254

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            ++ +  ETS+   ++  M    VMP      II++
Sbjct: 255 RAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIIN 290



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 50/107 (46%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++ L + GK + A+ +  SLT  G  P ++TY   + AL   ++      L   +E  G
Sbjct: 77  LMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNG 136

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V F  ++ +F       + +++ R M  R   P  S  + ++
Sbjct: 137 LKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLI 183


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 128 FNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 187

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVP------NGVTFTTLIDGHC 241

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AHDL  +M +KG+ P+ +
Sbjct: 242 KSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 301

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 302 TYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALIS 343



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 106/191 (55%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A  L
Sbjct: 228 PNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDL 287

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MIQ  +R D       VAY  L
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDD------VAYTAL 341

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +  AGL P+  TY + I+  C    +     L  +M+  G 
Sbjct: 342 ISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 401

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 402 VPSVVTYNVLM 412



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 117/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M D+ + PN VT+ +LI G C +   + A  
Sbjct: 192 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAME 251

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 252 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK------ITYTT 305

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 306 LIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAG 365

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +     +LL+ M +   +P
Sbjct: 366 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 403



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 157 RPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANE 216

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D+GL  + VTF  ++D  CK+ ++D A  +   M+   + PD      ++ Y  
Sbjct: 217 LFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPD------LITYNT 270

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 271 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEN 330

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++       ++LR M    + P     ++I++   K 
Sbjct: 331 IRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKK 383



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK   +  A  + + + + G+RP      ++V++  
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRP------SVVSFNT 165

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M  KG
Sbjct: 166 LMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 225

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 226 LVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSP 263



 Score = 43.9 bits (102), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+T TY  II+  CK+G V    +L  +M+ +   P+VVTYN L++G
Sbjct: 367 KPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ + K+   K      + +   G   ++  +NI +H  C +  +  A  +F  +   G
Sbjct: 96  VLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWG 155

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 156 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCK 207


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 112/190 (58%), Gaps = 6/190 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P++ TY T+I+GLC+   + +AKEL  +M+ +  +P+VVTY S+IHG C  N+ +EA 
Sbjct: 216 CEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAM 275

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M D+ ++ +V T++ +MD  CK      A  +L+LMIQ  +RP      N+++Y 
Sbjct: 276 RLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRP------NMISYS 329

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++GLC  GK+  A E+   +   G  P+   Y   ++ LC+  +  +A +   +M + 
Sbjct: 330 TLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLC 389

Query: 192 GVAPNCVIFT 201
           G+ PN + ++
Sbjct: 390 GIKPNRITWS 399



 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 13/236 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY +II GLC+   VD+A  L   MKD+NI PNV TY+SL+ GFC     + A 
Sbjct: 251 CSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRAR 310

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+ + L+ ++++++ +++ LC   K++EA  + D M   G +PDA        YG
Sbjct: 311 DILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDA------GLYG 364

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY-------NITIHALCNDEQMDKAHDL 184
            +++ LC + + + A      +   G+ PN +T+       N  IH LC     ++A  L
Sbjct: 365 KIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQL 424

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +L +  +G++     F +L+  F  K +  K   +L  M     +P   + S +V+
Sbjct: 425 YLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVN 480



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 106/196 (54%), Gaps = 9/196 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCK-EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           R+ G+   P   + N +I   CK  G +DKA  LF  M +    P+  TY +LI+G C  
Sbjct: 176 RKMGI--PPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRF 233

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA+ L  EM  +G    VVT+  I+  LC+   +DEA RLL+ M    + P     
Sbjct: 234 RSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEP----- 288

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+  Y  L+DG CK G    AR++ + + +  L PN+++Y+  ++ LCN+ ++++A ++
Sbjct: 289 -NVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEI 347

Query: 185 FLDMEVKGVAPNCVIF 200
           F  M+++G  P+  ++
Sbjct: 348 FDRMKLQGFKPDAGLY 363



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 9/225 (4%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
            +F +M+D +  P   +Y S++      N    A   + +M   G+   V + NV++   
Sbjct: 135 RVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAF 194

Query: 97  CKNR-KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           CKN   MD+A  L   M   G  PD++       YG LI+GLC+   +  A+EL Q +  
Sbjct: 195 CKNSGTMDKAMHLFRTMSNHGCEPDSY------TYGTLINGLCRFRSIVEAKELLQEMET 248

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            G  P+VVTY   IH LC    +D+A  L  DM+ K + PN   +++LM  F +   +S+
Sbjct: 249 KGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSR 308

Query: 216 VIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN-SIPQFNRQK 259
             ++L  M ++ + P     S +++ L  NE  +N ++  F+R K
Sbjct: 309 ARDILELMIQKRLRPNMISYSTLLNGLC-NEGKINEALEIFDRMK 352



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 9/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NE 69
           CKP   +Y +++  L +E  +  A   +  M+   I P V + N LI  FC  N G  ++
Sbjct: 145 CKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFC-KNSGTMDK 203

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A +LF  M + G + D  T+  +++ LC+ R + EA  LL  M   G  P      ++V 
Sbjct: 204 AMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSP------SVVT 257

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I GLC++  +  A  L + +    + PNV TY+  +   C      +A D+   M 
Sbjct: 258 YTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMI 317

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            K + PN + ++TL+     + + ++ +E+   M  +   P A +   IV+ L
Sbjct: 318 QKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCL 370



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 9/113 (7%)

Query: 10  VVC--KPNTVTY-------NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           V+C  KPN +T+       N +I GLC     ++A +L+L +    I+  V T+NSL+  
Sbjct: 387 VLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKC 446

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           FC   D  +   +  EM+  G       ++ +++  C  RK  +A +LL L +
Sbjct: 447 FCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVNCFCDERKACDAMKLLQLQL 499


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 9/227 (3%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YNT++ G C+ G +D A+ L   M    + P+  TY  +I G C      EA  L  +M+
Sbjct: 147 YNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 203

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
            RG Q  VVT+ V+++ +CK+    +A  +LD M   G  P      NIV Y  +I+G+C
Sbjct: 204 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTP------NIVTYNVIINGMC 257

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           + G++ +ARE    L+  G  P+ V+Y   +  LC  ++ +   +LF +M  K   PN V
Sbjct: 258 REGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEV 317

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            F  L+  F R     + I++L  M         ++ +I+++ + K 
Sbjct: 318 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ 364



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 116/219 (52%), Gaps = 9/219 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N VTYN +++G C +G VD A ELF  M      PN +TY +L+ G C A   + A 
Sbjct: 452 CEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAA 508

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +    +VVTFNV++   C+   MDEA  L++ M++ G  P      N++ Y 
Sbjct: 509 ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTP------NLITYN 562

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG+ K    + A EL   L   G+ P++VTY+  I  L  ++++++A  +F  ++  
Sbjct: 563 TLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 622

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P  VI+  ++ +  ++  T   I+    M     MP
Sbjct: 623 GMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMP 661



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 6/222 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           + + CKPNT+TY T++ GLC    +D A EL  +M  ++  PNVVT+N L+  FC     
Sbjct: 480 YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLM 539

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +EA  L  +MM+ G   +++T+N ++D + K+   +EA  LL  ++  GV PD      I
Sbjct: 540 DEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPD------I 593

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  +I  L +  +++ A ++   +   G+ P  V YN  + ALC     D A D F  
Sbjct: 594 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 653

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           M   G  PN + + TL+     ++   +  +LLR +  R V+
Sbjct: 654 MVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 695



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 122/255 (47%), Gaps = 30/255 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN II+G+C+EG VD A+E   ++      P+ V+Y +++ G C A    + E
Sbjct: 242 CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE 301

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------------ 119
            LF EMM++    + VTF++++   C+   ++ A ++L+ M   G               
Sbjct: 302 ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 361

Query: 120 -------DAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                  DAF          C  + ++Y  ++ GLC+  + ++A+EL + + R    PN 
Sbjct: 362 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 421

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VT+N  I  LC    +++A  L   M   G   N V +  L+  F  +      +EL  S
Sbjct: 422 VTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYS 481

Query: 223 MD-KRNVMPYASILS 236
           M  K N + Y ++L+
Sbjct: 482 MPCKPNTITYTTLLT 496



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 9/245 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T++Y T++ GLC+    + AKEL  +M  +N  PN VT+N+ I   C      +A 
Sbjct: 382 CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQAT 441

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M + G + ++VT+N +++  C   ++D A  L   M          C+ N + Y 
Sbjct: 442 MLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---------CKPNTITYT 492

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLC   +L  A EL   + +    PNVVT+N+ +   C    MD+A +L   M   
Sbjct: 493 TLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEH 552

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  PN + + TL+    +   + + +ELL  +    V P     S I+ +L + +    +
Sbjct: 553 GCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 612

Query: 252 IPQFN 256
           I  F+
Sbjct: 613 IKMFH 617



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 9/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+NT I  LC++G +++A  L  QM +     N+VTYN+L++GFC     + A 
Sbjct: 417 CPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSAL 476

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M     + + +T+  ++  LC   ++D A  LL  M+Q    P      N+V + 
Sbjct: 477 ELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAP------NVVTFN 527

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G +  A EL + +   G  PN++TYN  +  +  D   ++A +L   +   
Sbjct: 528 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSN 587

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           GV+P+ V +++++    R++   + I++   +    + P A I + I+  L K
Sbjct: 588 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCK 640



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY  +++ +CK     +A E+  +M+ +   PN+VTYN +I+G C     ++A 
Sbjct: 207 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 266

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                +   G Q D V++  ++  LC  ++ ++   L   M++    P      N V + 
Sbjct: 267 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMP------NEVTFD 320

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G ++ A ++ + ++  G   N    NI I+ +C   ++D A     +M   
Sbjct: 321 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 380

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G +P+ + +TT++    R        ELL+ M ++N  P
Sbjct: 381 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPP 419



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 9/181 (4%)

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           A     A  L      RG   DV     ++  LC+  +  +A R+L    + G   D F 
Sbjct: 87  ATTSPRAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVF- 145

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                AY  L+ G C+ G+L  AR L  S+  A   P+  TY   I  LC+  ++ +A  
Sbjct: 146 -----AYNTLVAGYCRYGQLDAARRLIASMPVA---PDAYTYTPIIRGLCDRGRVGEALS 197

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           L  DM  +G  P+ V +T L+ +  +     + +E+L  M  +   P     ++I++ + 
Sbjct: 198 LLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMC 257

Query: 244 K 244
           +
Sbjct: 258 R 258



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 9/141 (6%)

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           A RL+D     G  PD +          LI  LC+ G+  +A  + ++  R+G   +V  
Sbjct: 93  AARLVDRATSRGEAPDVYLCTK------LIRNLCRRGRTSDAARVLRAAERSGTAVDVFA 146

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  +   C   Q+D A  L   M    VAP+   +T ++     +    + + LL  M 
Sbjct: 147 YNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 203

Query: 225 KRNVMPYASILSIIVDLLVKN 245
            R   P     +++++ + K+
Sbjct: 204 HRGCQPSVVTYTVLLEAVCKS 224


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 124/266 (46%), Gaps = 32/266 (12%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  P+  TYN +IDG CK G +  A  +   M+    NP+  TYNSLIHG C     +
Sbjct: 318 GVV--PSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLC-GGKPD 374

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR---------- 118
           EAE L    + RG    V+TF  I++  CK  K+D+A R+  +MI    +          
Sbjct: 375 EAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLI 434

Query: 119 ------------PDAFCEI-------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
                        D   EI       N+V Y  +ID  CK+GK+  A E+ +     G  
Sbjct: 435 SVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCR 494

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           PN  TY+  I+ L  D+++ KA  L   M+  G+ P  + +TTL+    +K+E      L
Sbjct: 495 PNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRL 554

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKN 245
              M++  + P     +++ D L K+
Sbjct: 555 FEMMEQNGLTPDEQAYNVLTDALCKS 580



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 13/229 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN  TY+++I GL ++  + KA  L  +M+++ I P V+TY +LI G C  ++ + A 
Sbjct: 493 CRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAF 552

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M   GL  D   +NV+ D LCK+ + +EA   L   ++ GV       +  V Y 
Sbjct: 553 RLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL---VKKGV------VLTKVTYT 603

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG  K G  + A  L + +   G   +  TY++ + ALC  +++++A  +   M ++
Sbjct: 604 SLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLR 663

Query: 192 GVAPNCVIFTTLMPSFIR--KNETSKVI--ELLRSMDKRNVMPYASILS 236
           GV  N V +T ++   I+  K++ +K +  E++ S  K + + Y   +S
Sbjct: 664 GVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFIS 712



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 7/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYNT+I   CKEG +  A   F  +++  +  +  T N+L+ G+C   D  +A +L
Sbjct: 181 PDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWL 240

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            + M   G + +  ++ +++  LC+ R + EA  LL +M+Q G  P      N+  Y  L
Sbjct: 241 LMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSP------NLHTYTLL 294

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK G++ +AR L   + R G++P+V TYN  I   C   ++  A  +   ME  G 
Sbjct: 295 IRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGC 354

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            P+   + +L+       +  +  ELL     R   P     + I++   K E
Sbjct: 355 NPDDWTYNSLIHGLC-GGKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAE 406



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 116/235 (49%), Gaps = 7/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY  +I GLCKEG +  A+ L  +M    + P+V TYN++I G+C +    +A 
Sbjct: 284 CSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDAL 343

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M   G   D  T+N ++  LC   K DEA  LL+  I  G  P       ++ + 
Sbjct: 344 GIKTLMEGNGCNPDDWTYNSLIHGLCGG-KPDEAEELLNGAIARGFSP------TVITFT 396

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G CK  K+ +A  +   +  +    ++  Y + I  L    ++ +A D   ++   
Sbjct: 397 NIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFAN 456

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G++PN VI+T+++ ++ +  +    +E+ +  +     P A   S ++  L++++
Sbjct: 457 GLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQ 511



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 22/239 (9%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTY +++DG  K G  + A  L  +M +E    +  TY+ L+   C     NEA  +  +
Sbjct: 600 VTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQ 659

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M  RG++ ++V + +I+ E+ K  K D A  + + MI  G +P A      + Y   I  
Sbjct: 660 MTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSA------ITYTVFISS 713

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CKIG+++ A  L   + R G+ P+VVTYN+ I+   +   MD A      M      PN
Sbjct: 714 YCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPN 773

Query: 197 CVIFTTLMPSFIRKN-------ETS---------KVIELLRSMDKRNVMPYASILSIIV 239
              +  L+  F++ +       +TS          V +LL  M K  + P A   S I+
Sbjct: 774 YWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSII 832



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 31/261 (11%)

Query: 4   GNREFGVV---------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY 54
           GN EF            CK ++ TY+ ++  LCK+  +++A  +  QM    +  N+V Y
Sbjct: 613 GNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAY 672

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
             +I         + A+ +F EM+  G +   +T+ V +   CK  +++EA  L+  M +
Sbjct: 673 TIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMER 732

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI----- 169
            GV PD      +V Y   I+G   +G +  A    + +  A   PN  TY + +     
Sbjct: 733 NGVAPD------VVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLK 786

Query: 170 -----------HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
                        + N  ++D    L   M   G+ P  V +++++  F +     +   
Sbjct: 787 MSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACV 846

Query: 219 LLRSMDKRNVMPYASILSIIV 239
           LL  M  +++ P   I ++++
Sbjct: 847 LLDHMLGKDISPNEEIYTMLI 867



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 24/231 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY- 72
           P+ VTYN  I+G    G++D A     +M D +  PN  TY  L+  F   +  N A Y 
Sbjct: 737 PDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSLAN-AHYV 795

Query: 73  ----------------LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
                           L   M+  GL    VT++ I+   CK  +++EA  LLD M+   
Sbjct: 796 DTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKD 855

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           + P+   EI    Y  LI   C I   + A     ++   G  P++ +Y+  I  LC++ 
Sbjct: 856 ISPNE--EI----YTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEG 909

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
             DKA  LF D+       N V +  L    ++        +LL +M+ R+
Sbjct: 910 DYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMENRH 960



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 22/200 (11%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGF----------------VDKAKELFLQMKDENINP 49
           R     C+PN  TY  ++    K                   +D   +L  +M    +NP
Sbjct: 764 RMIDASCEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNP 823

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
             VTY+S+I GFC A    EA  L   M+ + +  +   + +++   C  +  ++A   +
Sbjct: 824 TAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFV 883

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
             MI+ G +P      ++ +Y  LI GLC  G    A+ L   L       N V + I  
Sbjct: 884 TNMIECGFQP------HLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILN 937

Query: 170 HALCNDEQMDKAHDLFLDME 189
             L     +D    L   ME
Sbjct: 938 DGLLKAGHVDICSQLLSAME 957



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 50/108 (46%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   Y  +I   C     +KA      M +    P++ +Y+ LI G C   D ++A+ L
Sbjct: 858 PNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKAL 917

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           F ++++     + V + ++ D L K   +D  ++LL  M     R D+
Sbjct: 918 FCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMENRHCRIDS 965



 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  +Y+ +I GLC EG  DKAK LF  + + + N N V +  L  G   A   +    
Sbjct: 892 QPHLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQ 951

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           L   M +R  + D  T++++ + + +   M E+
Sbjct: 952 LLSAMENRHCRIDSETYSMVTNNIHEASGMYES 984


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T  YNT+IDG CK G V+KA +L  +MK +   P VVTY S+I G    +  +EA 
Sbjct: 615 CVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAY 674

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF E   +G++ +VV ++ ++D   K  ++DEA  +++ ++Q G+ P      N+  + 
Sbjct: 675 MLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP------NVYTWN 728

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           CL+D L K  ++  A    QS+      PN +TY+I IH LC   + +KA   + +M+ +
Sbjct: 729 CLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQ 788

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   +TT++    +     +   L     ++  +  ++I + I++ L
Sbjct: 789 GFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGL 839



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  +I GL K GF  +A ELF  MK++    +   YN++I GFC +   N+A  L
Sbjct: 582 PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQL 641

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G +  VVT+  ++D L K  ++DEA  L +     G+      E+N+V Y  L
Sbjct: 642 LEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI------ELNVVIYSSL 695

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K+G++  A  + + L + GL PNV T+N  + AL   E++ +A   F  M+    
Sbjct: 696 IDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKC 755

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
            PN + ++ L+    +  + +K     + M K+    NV  Y +++S
Sbjct: 756 TPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMIS 802



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 130/265 (49%), Gaps = 29/265 (10%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            C+P+ VTY ++I+GL + G VD+A +L+ QM D N  PN V Y SLI  F       + 
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDG 533

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMD------ELCKNRKMDEA-------------TRLLDL 111
             ++ EM+  G   D++  N  MD      E+ K R + +              T L+  
Sbjct: 534 HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHG 593

Query: 112 MIQGGVRPDAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +++ G   +A+          C ++  AY  +IDG CK GK+  A +L + +   G  P 
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPT 653

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY   I  L   +++D+A+ LF + + KG+  N VI+++L+  F +     +   ++ 
Sbjct: 654 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIME 713

Query: 222 SMDKRNVMPYASILSIIVDLLVKNE 246
            + ++ + P     + ++D LVK E
Sbjct: 714 ELMQKGLTPNVYTWNCLLDALVKAE 738



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 7/248 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YN I+  L ++G VD+A + F +MK + I PN+ TYN +I   C A     A 
Sbjct: 371 CIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETAL 429

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M D GL  +V+T N+++D LCK +++D+A  + + +     RPDA      V Y 
Sbjct: 430 VVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDA------VTYC 483

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GL + G++  A +L + +  A  +PN V Y   I       + +  H ++ +M   
Sbjct: 484 SLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRL 543

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G +P+ ++  T M    +  E  K   L + +     +P A   +I++  LVK   +  +
Sbjct: 544 GCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEA 603

Query: 252 IPQFNRQK 259
              F   K
Sbjct: 604 YELFYTMK 611



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTY ++I  LCK   +++A ELF  M      P    YN++I G+  A    +A  L   
Sbjct: 306 VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
              +G    VV++N I+  L +  ++DEA +  + M     + DA    N+  Y  +ID 
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-----KKDAI--PNLSTYNIMIDM 418

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK GKL+ A  +  ++  AGL PNV+T NI +  LC  +++D A  +F  ++ K   P+
Sbjct: 419 LCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPD 478

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            V + +L+    R     +  +L   M   N +P A + + ++
Sbjct: 479 AVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLI 521



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +ID LCK G ++ A  +   MKD  + PNV+T N ++   C A   ++A  +
Sbjct: 407 PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSI 466

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
           F  +  +  + D VT+  +++ L ++ ++DEA +L + M+     P+A            
Sbjct: 467 FEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             C  +++     +D + K G+++  R L Q +   G +P+  +
Sbjct: 527 CGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARS 586

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y I IH L       +A++LF  M+ +G   +   + T++  F +  + +K  +LL  M 
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 646

Query: 225 KRNVMPYASILSIIVDLLVK 244
            +   P       ++D L K
Sbjct: 647 TKGHEPTVVTYGSVIDGLAK 666



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 7/232 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P    Y  +I  L      D    LF QM++     NV  + +LI  F      + A  
Sbjct: 197 RPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALS 256

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM    L+ DVV +NV +D   K  K+D A +    M   G+  D       V Y  
Sbjct: 257 LLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDD------VTYTS 310

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK  +L  A EL + + +   +P    YN  I       + + A+ L      KG
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG 370

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+ V +  ++    RK +  + ++    M K++ +P  S  +I++D+L K
Sbjct: 371 CIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCK 421



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TY+ +I GLCK    +KA   + +M+ +   PNV TY ++I G   A +  EA+
Sbjct: 755 CTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEAD 814

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
            LF +  ++G  +D   +N I++ L    +  +A RL +
Sbjct: 815 TLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFE 853



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 18/230 (7%)

Query: 39  FLQ-MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           F+Q M+     P    Y +LI     + D +    LF +M + G   +V  F  ++    
Sbjct: 187 FIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFA 246

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +  ++D A  LLD M    + PD      +V Y   ID   K GK+  A +    +   G
Sbjct: 247 REGRVDAALSLLDEMKSNSLEPD------VVLYNVCIDCFGKAGKVDMAWKXFHEMKANG 300

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L+ + VTY   I  LC  +++++A +LF  M+     P    + T++  +    +     
Sbjct: 301 LVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAY 360

Query: 218 ELLRSMDKRNVMP----YASILSII-----VDLLVKN--EISLNSIPQFN 256
            LL    ++  +P    Y  ILS +     VD  +K   E+  ++IP  +
Sbjct: 361 SLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLS 410



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY T+I GL K G + +A  LF + K++    +   YN++I G   AN  ++A  
Sbjct: 791 KPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYR 850

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           LF E   +G      T  V++D L K   +++A 
Sbjct: 851 LFEEARLKGCSIYTKTCVVLLDSLHKAECIEQAA 884



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 29/209 (13%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
            YNSL+         N  E +  EM   G      T   I+    K+RK+ EA   +  M
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 113 IQGGVRP----------------DAFC-------------EINIVAYGCLIDGLCKIGKL 143
            +   RP                D+ C              +N+  +  LI    + G++
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
             A  L   +    L P+VV YN+ I       ++D A   F +M+  G+  + V +T++
Sbjct: 252 DAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSM 311

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           +    + +  ++ +EL   MD+   +P A
Sbjct: 312 IGVLCKADRLNEAVELFEHMDQNKQVPCA 340


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 125/249 (50%), Gaps = 9/249 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + T++DG CK   +  A+ LF+ M    ++PN+  YN LIHG C + +  EA  L
Sbjct: 302 PNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGL 361

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM    L  DV T+ ++++ LC   ++ EA RL   M    + P +        Y  L
Sbjct: 362 LSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSS------ATYNSL 415

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK   ++ A +L   +T +G+ PN++T++  I   CN   +  A  L+ +M +KG+
Sbjct: 416 IHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGI 475

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN---EISLN 250
            P+ V +T L+ +  ++    + + L   M +  + P     + +VD   K     ++++
Sbjct: 476 VPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAID 535

Query: 251 SIPQFNRQK 259
              + N+Q+
Sbjct: 536 FYQENNQQR 544



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 120/239 (50%), Gaps = 8/239 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           ++ GV+  PN  TY+ +IDG CK G V +A  L+ ++    + PNVV + +L+ GFC A 
Sbjct: 261 KKHGVL--PNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKAR 318

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           +   A  LF+ M+  G+  ++  +N ++   CK+  M EA  LL  M    + PD F   
Sbjct: 319 ELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVF--- 375

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y  LI+GLC   ++  A  L Q +    + P+  TYN  IH  C +  M++A DL 
Sbjct: 376 ---TYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLC 432

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +M   GV PN + F+TL+  +    +    + L   M  + ++P     + ++D   K
Sbjct: 433 SEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFK 491



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN   Y   I  LC++  +++A+++F  MK   + PN+ TY+++I G+C   +  +A  
Sbjct: 231 KPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYG 290

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ E++   L  +VV F  ++D  CK R++  A  L   M++ GV P      N+  Y C
Sbjct: 291 LYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDP------NLYVYNC 344

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK G +  A  L   +    L P+V TY I I+ LC ++Q+ +A+ LF  M+ + 
Sbjct: 345 LIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNER 404

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+   + +L+  + ++    + ++L   M    V P     S ++D
Sbjct: 405 IFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLID 452



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 111/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ TYN++I G CKE  +++A +L  +M    + PN++T+++LI G+C   D   A  L
Sbjct: 407 PSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGL 466

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM  +G+  DVVT+  ++D   K   M EA RL   M++ G+ P      N   + CL
Sbjct: 467 YFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHP------NDHTFACL 520

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K G+L  A +  Q   +     N V +   I  LC +  + +A   F DM   G+
Sbjct: 521 VDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGI 580

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+   + +++   +++   +  + L   M K  ++P
Sbjct: 581 TPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILP 617



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y  +     K+G   K ++L  +M    I PNV  Y   I   C  N   EAE +
Sbjct: 197 PDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKM 256

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G+  ++ T++ ++D  CK   + +A  L   ++   + P      N+V +G L
Sbjct: 257 FELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLP------NVVVFGTL 310

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK  +L  AR L   + + G+ PN+  YN  IH  C    M +A  L  +ME   +
Sbjct: 311 VDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNL 370

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +P+   +T L+     +++ ++   L + M    + P ++  + ++
Sbjct: 371 SPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLI 416



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +T++T+IDG C    +  A  L+ +M  + I P+VVTY +LI       +  EA  
Sbjct: 441 EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALR 500

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ +M++ G+  +  TF  ++D   K  ++  A   +D   +   +   +   N V + C
Sbjct: 501 LYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVA---IDFYQENNQQRSCW---NHVGFTC 554

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLC+ G +  A      +   G+ P++ +Y   +     ++++     L  DM   G
Sbjct: 555 LIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTG 614

Query: 193 VAPNCVIFTTLMPSFIRKN 211
           + PN ++   L+  F + N
Sbjct: 615 ILPNLLV-NQLLARFYQAN 632



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 42/208 (20%)

Query: 77  MMDRGLQSDVVTFNV----------------IMDE-------------------LCKNRK 101
           M+ RGL  DV  + V                ++DE                   LC++ K
Sbjct: 190 MISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNK 249

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           M+EA ++ +LM + GV P      N+  Y  +IDG CK G ++ A  L + +  A L+PN
Sbjct: 250 MEEAEKMFELMKKHGVLP------NLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPN 303

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VV +   +   C   ++  A  LF+ M   GV PN  ++  L+    +     + + LL 
Sbjct: 304 VVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLS 363

Query: 222 SMDKRNVMPYASILSIIVD-LLVKNEIS 248
            M+  N+ P     +I+++ L ++++++
Sbjct: 364 EMESLNLSPDVFTYTILINGLCIEDQVA 391



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 6/153 (3%)

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           I++ L + R+ D       LMI  G+ PD    I  V + C      K G      +L  
Sbjct: 170 ILNGLVRRRRFDSVWVDYQLMISRGLVPDV--HIYFVLFQCCF----KQGLYSKKEKLLD 223

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +T  G+ PNV  Y I I  LC D +M++A  +F  M+  GV PN   ++ ++  + +  
Sbjct: 224 EMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTG 283

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              +   L + +    ++P   +   +VD   K
Sbjct: 284 NVRQAYGLYKEILVAELLPNVVVFGTLVDGFCK 316


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N + +NT+IDG C++G VD A ++   M+   +  ++ TYN+L  G C  N  +EA+ L 
Sbjct: 351 NQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLL 410

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M++ G+  + VT+  ++   CK+  M EA RL   M + G  P      ++V Y  +I
Sbjct: 411 HIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATP------SVVTYNVMI 464

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G ++ A    + + + G +P+V TY   +H  C + ++D A  LF +M+ +G  
Sbjct: 465 DGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTE 524

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           PN V +T L+    ++  +    +L   M K  ++P  S+ S +V  L
Sbjct: 525 PNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 572



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 8/173 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GVV  PN VTY T+I   CK+G + +A+ LF +M ++   P+VVTYN +I G+     
Sbjct: 415 EMGVV--PNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGS 472

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EAE    EM  +G   DV T+  ++   C N K+D A +L + M Q G  P      N
Sbjct: 473 IREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEP------N 526

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           +VAY  LI GL K G+ + A +L   + +AGL+P+   Y+  + +L  D + D
Sbjct: 527 VVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKD 579



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 6/195 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TYNT+  GLC+   +D+AK L   M +  + PN VTY +LI   C   D  EA  LF EM
Sbjct: 389 TYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREM 448

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            ++G    VVT+NV++D   K   + EA R    M + G  PD +       Y  L+ G 
Sbjct: 449 AEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVY------TYASLVHGH 502

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  GK+  A +L + + + G  PNVV Y   I  L  + + + A  L+ DM   G+ P+ 
Sbjct: 503 CVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDD 562

Query: 198 VIFTTLMPSFIRKNE 212
            +++ L+ S    N 
Sbjct: 563 SLYSALVGSLHTDNR 577



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 9/218 (4%)

Query: 14  PNTVT---YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           P +V+    + ++DGLCK G VD A+ L   M    ++ N + YNSL+  +    D    
Sbjct: 172 PGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRV 231

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + +   M + G+++ V T+ +++D L   R + +   L + M    V  D +       Y
Sbjct: 232 QEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYL------Y 285

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I+  C+ G ++ A ++       G+ PN  TY + I+  C   QM+ A  L  DM+ 
Sbjct: 286 TAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQG 345

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           +GV  N +IF T++  + RK      +++  +M+K  V
Sbjct: 346 QGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGV 383



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 118/241 (48%), Gaps = 7/241 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY  ++D L     + K + LF +MK  N+  +V  Y ++I+ +C A +   A  +  E 
Sbjct: 249 TYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDEC 308

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +  G++ +  T+ V+++  CK  +M+ A  LL  M   GV       +N + +  +IDG 
Sbjct: 309 VGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGV------GLNQIIFNTMIDGY 362

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C+ G + +A ++  ++ + G+  ++ TYN     LC   ++D+A  L   M   GV PN 
Sbjct: 363 CRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNY 422

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           V +TTL+    +  +  +   L R M ++   P     ++++D   K   S+    +F +
Sbjct: 423 VTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKG-SIREAERFRK 481

Query: 258 Q 258
           +
Sbjct: 482 E 482



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 10/157 (6%)

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR-- 147
           +V++D LCK+ ++D+A RLLD M + GV  +A C      Y  L+D  C + +  + R  
Sbjct: 181 SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALC------YNSLLD--CYVRQKDDGRVQ 232

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           E+ + +   G+   V TY I + +L     + K   LF +M+   V  +  ++T ++ ++
Sbjct: 233 EILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAY 292

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            R     +  ++L       V P      ++++   K
Sbjct: 293 CRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCK 329



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%)

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            ++ +A   ++DGLCK G++ +AR L   + R G+  N + YN  +      +   +  +
Sbjct: 174 SVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 233

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           +   ME +G+      +T L+ S     + SKV  L   M   NV+
Sbjct: 234 ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVV 279



 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 141 GKLKNARELSQSLTRA-GLMPNVVT---YNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           G+L +A  L   L RA G  P  V+    ++ +  LC   ++D A  L  DM   GV+ N
Sbjct: 155 GRLADAAGL---LERALGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLN 211

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            + + +L+  ++R+ +  +V E+L  M+   +       +I+VD L
Sbjct: 212 ALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSL 257


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +T N +++GL K  + D+  E++ +M+   I PN+ T+N L H  C   D  +    
Sbjct: 266 PTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKF 325

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M + G   D+VT+N +++  C+  ++D+A  L  +M + GV PD      +V+Y  L
Sbjct: 326 LEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPD------LVSYTAL 379

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCK G+++ A +L   +   GL P++VTYN  IH  C + +M ++  L  DM   G+
Sbjct: 380 MNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGI 439

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+      L+  + ++ +    + L+  + +  V     I S ++  L +
Sbjct: 440 SPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCR 490



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 8/219 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            FG+   PN  T+N +   LCK+G   K  +   +M++E  +P++VTYN+LI+ +C    
Sbjct: 296 RFGIA--PNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGR 353

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++A YL+  M  RG+  D+V++  +M+ LCK  ++ EA +L   M+  G+ PD      
Sbjct: 354 LDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPD------ 407

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           IV Y  LI G CK GK++ +R L   +   G+ P+  T  + +     + +   A +L +
Sbjct: 408 IVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVV 467

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           +++  GV+ +  I++ L+ +  R+N       LL  M +
Sbjct: 468 ELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQ 506



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 8/218 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+I+  C++G +D A  L+  M    + P++V+Y +L++G C      EA  L
Sbjct: 336 PDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQL 395

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGC 132
           F  M+ RGL  D+VT+N ++   CK  KM E+  LL  MI  G+ PD+F C +       
Sbjct: 396 FHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWV------- 448

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K GK  +A  L   L R G+  +   Y+  I ALC + +   A +L   M   G
Sbjct: 449 LVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDG 508

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
                 I+  L+ SF + +  ++ + L   M  + + P
Sbjct: 509 HKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKP 546



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 116/229 (50%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V ++ ++    + G V +    F +M      P V+T N L++G    N  +   
Sbjct: 229 CNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCW 288

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ EM   G+  ++ TFN++   LCK+    +  + L+ M + G  PD      IV Y 
Sbjct: 289 EVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPD------IVTYN 342

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+  C+ G+L +A  L + + R G++P++V+Y   ++ LC + ++ +AH LF  M  +
Sbjct: 343 TLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHR 402

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G++P+ V + TL+  + ++ +  +   LL  M    + P +    ++V+
Sbjct: 403 GLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVE 451



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 13/165 (7%)

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLL----DLMIQGGVRPDAF---------CEI 125
           D GL+     + +I+  L  +R   +A + L    +L+       D F         C  
Sbjct: 172 DLGLRPSTQNYCIIVHTLAWSRNFSQAIKFLCELVELVKDDLPGEDVFKNLILCTEDCNW 231

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           + V +  L+    ++G+++      + + R G +P V+T N  ++ L      D+  +++
Sbjct: 232 DPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 291

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +ME  G+APN   F  L     +  +T KV + L  M++    P
Sbjct: 292 EEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDP 336



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 31/205 (15%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           + FGV    +  +Y  +I  LC+E     AK L  +M  +     +  YN LI  FC  +
Sbjct: 470 QRFGVSISQDIYSY--LIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCD 527

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----- 120
              EA  L +EM+D+ ++ ++ T+  ++  L +  +  E   L+  M+  G  PD     
Sbjct: 528 CIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVASGXLPDLEICR 587

Query: 121 ----AFCEINIV--------------------AYGCLIDGLCKIGKLKNARELSQSLTRA 156
                +C  N +                    ++  LI      G +  + E+   + + 
Sbjct: 588 ALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKM 647

Query: 157 GLMPNVVTYNITIHALCNDEQMDKA 181
           GL+PN +T    I  L    ++D A
Sbjct: 648 GLLPNPLTCKYVIDGLWKARRVDSA 672


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T  YNT+IDG CK G V+KA +L  +MK +   P VVTY S+I G    +  +EA 
Sbjct: 615 CVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAY 674

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF E   +G++ +VV ++ ++D   K  ++DEA  +++ ++Q G+ P      N+  + 
Sbjct: 675 MLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP------NVYTWN 728

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           CL+D L K  ++  A    QS+      PN +TY+I IH LC   + +KA   + +M+ +
Sbjct: 729 CLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQ 788

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G  PN   +TT++    +     +   L     ++  +  ++I + I++ L
Sbjct: 789 GFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGL 839



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  +I GL K GF  +A ELF  MK++    +   YN++I GFC +   N+A  L
Sbjct: 582 PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQL 641

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G +  VVT+  ++D L K  ++DEA  L +     G+      E+N+V Y  L
Sbjct: 642 LEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI------ELNVVIYSSL 695

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K+G++  A  + + L + GL PNV T+N  + AL   E++ +A   F  M+    
Sbjct: 696 IDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKC 755

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
            PN + ++ L+    +  + +K     + M K+    NV  Y +++S
Sbjct: 756 TPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMIS 802



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 130/265 (49%), Gaps = 29/265 (10%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            C+P+ VTY ++I+GL + G VD+A +L+ QM D N  PN V Y SLI  F       + 
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDG 533

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMD------ELCKNRKMDEA-------------TRLLDL 111
             ++ EM+  G   D++  N  MD      E+ K R + +              T L+  
Sbjct: 534 HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHG 593

Query: 112 MIQGGVRPDAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +++ G   +A+          C ++  AY  +IDG CK GK+  A +L + +   G  P 
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPT 653

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY   I  L   +++D+A+ LF + + KG+  N VI+++L+  F +     +   ++ 
Sbjct: 654 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIME 713

Query: 222 SMDKRNVMPYASILSIIVDLLVKNE 246
            + ++ + P     + ++D LVK E
Sbjct: 714 ELMQKGLTPNVYTWNCLLDALVKAE 738



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 7/248 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YN I+  L ++G VD+A + F +MK + I PN+ TYN +I   C A     A 
Sbjct: 371 CIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETAL 429

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M D GL  +V+T N+++D LCK +++D+A  + + +     RPDA      V Y 
Sbjct: 430 VVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDA------VTYC 483

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GL + G++  A +L + +  A  +PN V Y   I       + +  H ++ +M   
Sbjct: 484 SLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRL 543

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G +P+ ++  T M    +  E  K   L + +     +P A   +I++  LVK   +  +
Sbjct: 544 GCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEA 603

Query: 252 IPQFNRQK 259
              F   K
Sbjct: 604 YELFYTMK 611



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTY ++I  LCK   +++A ELF  M      P    YN++I G+  A    +A  L   
Sbjct: 306 VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
              +G    VV++N I+  L +  ++DEA +  + M     + DA    N+  Y  +ID 
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-----KKDAI--PNLSTYNIMIDM 418

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK GKL+ A  +  ++  AGL PNV+T NI +  LC  +++D A  +F  ++ K   P+
Sbjct: 419 LCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPD 478

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            V + +L+    R     +  +L   M   N +P A + + ++
Sbjct: 479 AVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLI 521



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +ID LCK G ++ A  +   MKD  + PNV+T N ++   C A   ++A  +
Sbjct: 407 PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSI 466

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
           F  +  +  + D VT+  +++ L ++ ++DEA +L + M+     P+A            
Sbjct: 467 FEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             C  +++     +D + K G+++  R L Q +   G +P+  +
Sbjct: 527 CGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARS 586

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y I IH L       +A++LF  M+ +G   +   + T++  F +  + +K  +LL  M 
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 646

Query: 225 KRNVMPYASILSIIVDLLVK 244
            +   P       ++D L K
Sbjct: 647 TKGHEPTVVTYGSVIDGLAK 666



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 7/232 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P    Y  +I  L      D    LF QM++     NV  + +LI  F      + A  
Sbjct: 197 RPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALS 256

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM    L+ DVV +NV +D   K  K+D A +    M   G+  D       V Y  
Sbjct: 257 LLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDD------VTYTS 310

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK  +L  A EL + + +   +P    YN  I       + + A+ L      KG
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG 370

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+ V +  ++    RK +  + ++    M K++ +P  S  +I++D+L K
Sbjct: 371 CIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCK 421



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TY+ +I GLCK    +KA   + +M+ +   PNV TY ++I G   A +  EA+
Sbjct: 755 CTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEAD 814

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
            LF +  ++G  +D   +N I++ L    +  +A RL +
Sbjct: 815 TLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFE 853



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 18/230 (7%)

Query: 39  FLQ-MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           F+Q M+     P    Y +LI     + D +    LF +M + G   +V  F  ++    
Sbjct: 187 FIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFA 246

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +  ++D A  LLD M    + PD      +V Y   ID   K GK+  A +    +   G
Sbjct: 247 REGRVDAALSLLDEMKSNSLEPD------VVLYNVCIDCFGKAGKVDMAWKFFHEMKANG 300

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L+ + VTY   I  LC  +++++A +LF  M+     P    + T++  +    +     
Sbjct: 301 LVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAY 360

Query: 218 ELLRSMDKRNVMP----YASILSII-----VDLLVKN--EISLNSIPQFN 256
            LL    ++  +P    Y  ILS +     VD  +K   E+  ++IP  +
Sbjct: 361 SLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLS 410



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY T+I GL K G + +A  LF + K++    +   YN++I G   AN  ++A  
Sbjct: 791 KPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYR 850

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           LF E   +G      T  V++D L K   +++A 
Sbjct: 851 LFEEARLKGCSIYTKTCVVLLDSLHKAECIEQAA 884



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 29/209 (13%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
            YNSL+         N  E +  EM   G      T   I+    K+RK+ EA   +  M
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 113 IQGGVRP----------------DAFC-------------EINIVAYGCLIDGLCKIGKL 143
            +   RP                D+ C              +N+  +  LI    + G++
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
             A  L   +    L P+VV YN+ I       ++D A   F +M+  G+  + V +T++
Sbjct: 252 DAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSM 311

Query: 204 MPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           +    + +  ++ +EL   MD+   +P A
Sbjct: 312 IGVLCKADRLNEAVELFEHMDQNKQVPCA 340


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  T  TI++G C+EG +++A   F +MK+  ++PN+  +NSLI GF   ND +    
Sbjct: 528 KPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGE 587

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G++ DVVTF+ +M+       M     +   M++GG+ PD      I A+  
Sbjct: 588 VVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPD------IHAFSI 641

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVK 191
           L  G  + G+ + A ++   + + G+ PNVV Y   I   C+  +M KA  ++  M  + 
Sbjct: 642 LAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIV 701

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G++PN   + TL+  F    +  K  ELL+ M+ +NV+P    + +I D
Sbjct: 702 GLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIAD 750



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%)

Query: 10  VVCKPNTV-----TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           V+C   T      +   +++GL + G   +A  +F  + +E   P+++TY +L+      
Sbjct: 308 VICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQ 367

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +    L  ++   GL+ D + FN I++   ++  +D+A ++ + M + G +P A   
Sbjct: 368 KHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTA--- 424

Query: 125 INIVAYGCLIDGLCKIGKL-KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                +  LI G  KIGKL +++R L   L    L PN  T NI + A CN  ++++A +
Sbjct: 425 ---STFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWN 481

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
           +   M+  GV P+ V F TL  ++ R   T
Sbjct: 482 IVYKMQSYGVKPDVVTFNTLAKAYARIGST 511



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 43/265 (16%)

Query: 13  KPNTVTYNTIIDGLCKE-----------------------------------GFVDKAKE 37
           KP+ +TY T++  L ++                                   G +D+A +
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 410

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM-DRGLQSDVVTFNVIMDEL 96
           +F +MK+    P   T+N+LI G+       E+  L   M+ D  LQ +  T N+++   
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAW 470

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL-SQSLTR 155
           C  RK++EA  ++  M   GV+PD      +V +  L     +IG    A ++    +  
Sbjct: 471 CNQRKIEEAWNIVYKMQSYGVKPD------VVTFNTLAKAYARIGSTCTAEDMIIPRMLH 524

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
             + PNV T    ++  C + +M++A   F  M+  GV PN  +F +L+  F+  N+   
Sbjct: 525 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDG 584

Query: 216 VIELLRSMDKRNVMPYASILSIIVD 240
           V E++  M++  V P     S +++
Sbjct: 585 VGEVVDLMEEFGVKPDVVTFSTLMN 609



 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 21/107 (19%), Positives = 49/107 (45%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GL + G+ + A  +  +L   G  P+++TY   + AL   +       L   +E  G
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ ++F  ++ +        + +++   M +    P AS  + ++
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLI 431


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 126/267 (47%), Gaps = 43/267 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT N+IIDGLCK   +DKA+E+  QM D++I P+  TYNSL+HG+  +    EA  +
Sbjct: 154 PDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRI 213

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL------------------------ 109
             +M   G   + VT+++++D LCK     EA  +L                        
Sbjct: 214 LKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYAT 273

Query: 110 -----------DLMIQGGVRPDAFC-EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
                      DLM+Q GVRPD     I I AY        K G+L  A      + + G
Sbjct: 274 KGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAY-------VKCGRLDEAMLTFNKMRQQG 326

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           LMP++++Y   I  LC   ++D A   F  M   G++P+ V+FT L+  F    +  K  
Sbjct: 327 LMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAE 386

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
           EL   M  R + P   + + ++D L K
Sbjct: 387 ELFYEMMDRGIRPTVVVFTTMIDKLFK 413



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 112/221 (50%), Gaps = 24/221 (10%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ G++  P+ ++Y T+IDGLCK G +D A   F QM D+ ++P++V + +LIHGF 
Sbjct: 320 NKMRQQGLM--PDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFS 377

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                 +AE LF EMMDRG++  VV F  ++D+L K  K+ EA  L DLM    V+P   
Sbjct: 378 MYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKP--- 434

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V+Y  +I G    GKL    +L   +   GL PN VT+N                
Sbjct: 435 ---NVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNT--------------- 476

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            L  DM   G+ P+     TL+ S         V+ L R M
Sbjct: 477 -LLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREM 516



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 8/250 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD--ENINPNVVTYNSLIHGFCYANDGNE 69
           C P+  +Y  ++ GLC E   ++A +L   M +  ++  PNVV+Y ++IHGF   ++  +
Sbjct: 80  CTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVGK 139

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  LF EM+DRG+  DVVT N I+D LCK + MD+A  +L  M    + PD         
Sbjct: 140 AYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDC------TT 193

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+ G    G+LK A  + + ++R G  PN VTY++ I  LC      +A ++   M 
Sbjct: 194 YNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMI 253

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
                PN   +  L+  +  K +  ++  L+  M +  V P   I +I +   VK     
Sbjct: 254 QSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLD 313

Query: 250 NSIPQFNRQK 259
            ++  FN+ +
Sbjct: 314 EAMLTFNKMR 323



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 117/238 (49%), Gaps = 6/238 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G  C PN V+Y T+I G  KE  V KA  LF +M D  I P+VVT NS+I G C    
Sbjct: 112 EDGDHCPPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQA 171

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++AE +  +M D+ +  D  T+N ++     + ++ EA R+L  M + G  P      N
Sbjct: 172 MDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPP------N 225

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  LID LCK G    ARE+  S+ ++   PNV TY   +H       + + ++L  
Sbjct: 226 GVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLID 285

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            M   GV P+  IF   + ++++     + +     M ++ +MP       ++D L K
Sbjct: 286 LMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCK 343



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 110/232 (47%), Gaps = 5/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P TVTY  +I   C  G ++ A     Q+    +  N +++  ++   C     ++A  +
Sbjct: 11  PTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEKRTSDAMNI 70

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            I    + G   DV ++ V++  LC  +K +EA  L+ +M + G      C  N+V+Y  
Sbjct: 71  VIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDG----DHCPPNVVSYTT 126

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G  K  ++  A  L   +   G+ P+VVT N  I  LC  + MDKA ++   M  K 
Sbjct: 127 VIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKH 186

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+C  + +L+  ++   +  + + +L+ M +    P     S+++D L K
Sbjct: 187 IMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCK 238



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 6/192 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   +N  I    K G +D+A   F +M+ + + P++++Y ++I G C     + A  
Sbjct: 293 RPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMS 352

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M+D GL  D+V F  ++       K ++A  L   M+  G+RP       +V +  
Sbjct: 353 QFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRP------TVVVFTT 406

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID L K GK+  A+ L   +  A + PNVV+YN  IH      ++D+   L  DM   G
Sbjct: 407 MIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVG 466

Query: 193 VAPNCVIFTTLM 204
           + PN V F TL+
Sbjct: 467 LKPNAVTFNTLL 478



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 95/188 (50%), Gaps = 7/188 (3%)

Query: 45  ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
           + + P  VTY  LI   CY    N A     +++  GL+++ ++F  I+  LC  ++  +
Sbjct: 7   KKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEKRTSD 66

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG--LMPNV 162
           A   ++++I+    P   C  ++ +Y  L+ GLC   K + A +L   +   G    PNV
Sbjct: 67  A---MNIVIRW--TPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNV 121

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V+Y   IH    ++++ KA+ LF +M  +G+ P+ V   +++    +     K  E+LR 
Sbjct: 122 VSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQ 181

Query: 223 MDKRNVMP 230
           M  +++MP
Sbjct: 182 MFDKHIMP 189



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 20/136 (14%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-- 70
           +P  V + T+ID L KEG V +AK LF  M   ++ PNVV+YN++IHG+  A   +E   
Sbjct: 398 RPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLK 457

Query: 71  -----------------EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
                              L  +M+  GL+ DV T N ++D  C++ ++++   L   M+
Sbjct: 458 LLDDMLSVGLKPNAVTFNTLLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREML 517

Query: 114 QGGVRPDAFCEINIVA 129
               + D   E NI++
Sbjct: 518 SKAAKTDTVTE-NIIS 532


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 113/219 (51%), Gaps = 7/219 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KPN  T+ T+IDGLCK+G+ +KA  LFL++ + +   PNV TY ++I+G+C  +  N AE
Sbjct: 326 KPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAE 385

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M ++GL  +  T+  ++D  CK      A  L+DLM + G  P      NI  Y 
Sbjct: 386 MLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSP------NIYTYN 439

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGLCK G L  A  L   ++  GL  + VTY I +   C     +++   F  M   
Sbjct: 440 AIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKV 499

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G  P+   +TTL+ +F R+ +  +   L        ++P
Sbjct: 500 GFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIP 538



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 6/214 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN IIDGLCK+G +D+A  L  ++    +  + VTY  L+   C   D N +   
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVF 492

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+  G   D+ ++  ++   C+ ++M E+ RL +  +  G+ P          Y  +
Sbjct: 493 FNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTK------KTYTSM 546

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G    A +L Q ++  G  P+ +TY   I  LC + ++D A +L+  M  KG+
Sbjct: 547 ICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           +P  V   TL   + +K+++S  I +L  ++KR 
Sbjct: 607 SPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQ 640



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 42/281 (14%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  T   IID  C++G+V++    F +M +  + PNV+ + +LI+G C      +A  L 
Sbjct: 258 DNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELL 317

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL-LDLMIQGGVRP---------DAFCE 124
            EM+ RG + +V T   ++D LCK    ++A RL L L+   G +P         + +C+
Sbjct: 318 EEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCK 377

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                N   Y  LIDG CK+G    A EL   + + G  PN+ T
Sbjct: 378 EDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYT 437

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I  LC    +D+A+ L   + V G+  + V +T LM    R+ +T++ +     M 
Sbjct: 438 YNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKML 497

Query: 225 KRNVMP----YASILSIIV--------DLLVKNEISLNSIP 253
           K    P    Y +++S           + L +  +SL  IP
Sbjct: 498 KVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIP 538



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T T N ++D     G V+ A+ +F++M    ++P+ V++  ++   C      EAE  
Sbjct: 187 PSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERW 246

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M++RG   D  T  +I+D  C+   ++        M++ G+ P      N++ +  L
Sbjct: 247 LNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAP------NVINFTAL 300

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKG 192
           I+GLCK G +K A EL + + R G  PNV T+   I  LC     +KA  LFL +    G
Sbjct: 301 INGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDG 360

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             PN   +T ++  + ++++ ++   LL  M ++ ++P  +  + ++D
Sbjct: 361 YKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLID 408



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V++  ++   C  G V +A+     M +     +  T   +I  FC     N     
Sbjct: 222 PDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGY 281

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M++ GL  +V+ F  +++ LCK   + +A  LL+ M++ G +P      N+  +  L
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKP------NVYTHTTL 335

Query: 134 IDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           IDGLCK G  + A  L   L R+ G  PNV TY   I+  C ++++++A  L   M+ +G
Sbjct: 336 IDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQG 395

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN   +TTL+    +     +  EL+  M K    P     + I+D L K
Sbjct: 396 LVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCK 447



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 9/215 (4%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+   V   P+  +Y T+I   C++  + +++ LF +     + P   TY S+I G+C  
Sbjct: 494 NKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRY 553

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            + + A  LF  M + G   D +T+  ++  LCK  K+D+A  L D M+  G+ P   CE
Sbjct: 554 GNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSP---CE 610

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +  +    L    CK      A  +   L +      + T N  +  LC++ ++D A   
Sbjct: 611 VTRLT---LAYEYCKKDDSSTAINVLDRLEKRQW---IRTVNTLVRKLCSEGKLDMAALF 664

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           F  +  K    N V     M      N+   V EL
Sbjct: 665 FHKLLDKEPNVNRVTLLGFMNKCYESNKYGLVSEL 699



 Score = 42.0 bits (97), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 53/109 (48%)

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           C++    + GKLK A  +   +   GL+P+  T N  +        ++ A ++F++M  +
Sbjct: 159 CMVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQR 218

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           GV+P+CV F  ++ +        +    L +M +R  +   +  ++I+D
Sbjct: 219 GVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIID 267



 Score = 38.1 bits (87), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 41/182 (22%)

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +N K+ EA  ++  M   G+ P            C++D    +G ++ A  +   + + G
Sbjct: 166 ENGKLKEAVNMVVEMQNQGLVPST------QTLNCVLDVAVGMGLVEIAENMFVEMCQRG 219

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDL--------------------------------- 184
           + P+ V++ + + A CN  ++ +A                                    
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVV 279

Query: 185 --FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             F  M   G+APN + FT L+    ++    +  ELL  M +R   P     + ++D L
Sbjct: 280 GYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGL 339

Query: 243 VK 244
            K
Sbjct: 340 CK 341


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +T N +++GL K  + D+  E++ +M+   I PN+ T+N L H  C   D  +    
Sbjct: 221 PTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKF 280

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M + G   D+VT+N +++  C+  ++D+A  L  +M + GV PD      +V+Y  L
Sbjct: 281 LEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPD------LVSYTAL 334

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCK G+++ A +L   +   GL P++VTYN  IH  C + +M ++  L  DM   G+
Sbjct: 335 MNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGI 394

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+      L+  + ++ +    + L+  + +  V     I S ++  L +
Sbjct: 395 SPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCR 445



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 8/223 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG+   PN  T+N +   LCK+G   K  +   +M++E  +P++VTYN+LI+ +C     
Sbjct: 252 FGIA--PNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRL 309

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           ++A YL+  M  RG+  D+V++  +M+ LCK  ++ EA +L   M+  G+ PD      I
Sbjct: 310 DDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPD------I 363

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI G CK GK++ +R L   +   G+ P+  T  + +     + +   A +L ++
Sbjct: 364 VTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVE 423

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++  GV+ +  I++ L+ +  R+N       LL  M K    P
Sbjct: 424 LQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKP 466



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 8/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+I+  C++G +D A  L+  M    + P++V+Y +L++G C      EA  L
Sbjct: 291 PDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQL 350

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGC 132
           F  M+ RGL  D+VT+N ++   CK  KM E+  LL  MI  G+ PD+F C +       
Sbjct: 351 FHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWV------- 403

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K GK  +A  L   L R G+  +   Y+  I ALC + +   A +L   M   G
Sbjct: 404 LVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDG 463

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P   I+  L+ SF + +  ++ + L   M  + + P  +    ++  L +
Sbjct: 464 HKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSR 515



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 116/229 (50%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V ++ ++    + G V +    F +M      P V+T N L++G    N  +   
Sbjct: 184 CNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCW 243

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ EM   G+  ++ TFN++   LCK+    +  + L+ M + G  PD      IV Y 
Sbjct: 244 EVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPD------IVTYN 297

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+  C+ G+L +A  L + + R G++P++V+Y   ++ LC + ++ +AH LF  M  +
Sbjct: 298 TLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHR 357

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G++P+ V + TL+  + ++ +  +   LL  M    + P +    ++V+
Sbjct: 358 GLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVE 406



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATR----LLDLMIQGGVRPDAF---------CEI 125
           D GL+     + +++  L  +R   +A +    L++L+       D F         C  
Sbjct: 127 DLGLRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVELVKDDLPSEDVFKNLILCTEDCNW 186

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           + V +  L+    ++G+++      + + R G +P V+T N  ++ L      D+  +++
Sbjct: 187 DPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 246

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +ME  G+APN   F  L     +  +T KV + L  M++    P
Sbjct: 247 EEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDP 291



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 31/190 (16%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           + FGV    +  +Y  +I  LC+E     AK L  +M  +   P +  YN LI  FC  +
Sbjct: 425 QRFGVSISQDIYSY--LIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCD 482

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----- 120
              EA  L +EM+D+ ++ ++ T+  ++  L +  +  E   L+  M+  G+ PD     
Sbjct: 483 CIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICR 542

Query: 121 ----AFCEINIV--------------------AYGCLIDGLCKIGKLKNARELSQSLTRA 156
                +C  N +                    ++  LI      G +  + E+   + + 
Sbjct: 543 ALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKM 602

Query: 157 GLMPNVVTYN 166
           GL+PN +T N
Sbjct: 603 GLLPNPLTCN 612


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TYNTII G+CKEG VD+A E+   ++ +   P+V++YN L+          E E 
Sbjct: 260 KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEK 319

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M       +VVT+++++  LC++ K++EA  LL LM + G+ PDA+      +Y  
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY------SYDP 373

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C+ G+L  A E  +++   G +P++V YN  +  LC + + D+A ++F  +   G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
            +PN   + T+  +     +  + + ++  M    + P    Y S++S +
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYN +I  LC  G +D A ++  Q+  +N  P V+TY  LI         +EA  L
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ RGL+ D+ T+N I+  +CK   +D A  ++  +   G  PD      +++Y  L
Sbjct: 251 MDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPD------VISYNIL 304

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  L   GK +   +L   +      PNVVTY+I I  LC D ++++A +L   M+ KG+
Sbjct: 305 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   +  L+ +F R+      IE L +M     +P     + ++  L KN
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKN 416



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YN +I+G CK   +D A  +  +M+ ++ +P+ VTYN +I   C     + A  
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++    Q  V+T+ ++++       +DEA +L+D M+  G++PD F       Y  
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF------TYNT 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G+CK G +  A E+ ++L   G  P+V++YNI + AL N  + ++   L   M  + 
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             PN V ++ L+ +  R  +  + + LL+ M ++ + P A
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDA 368



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 6/233 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F   C PN VTY+ +I  LC++G +++A  L   MK++ + P+  +Y+ LI  FC     
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A      M+  G   D+V +N ++  LCKN K D+A  +   + + G  P      N 
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP------NS 438

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            +Y  +   L   G    A  +   +   G+ P+ +TYN  I  LC +  +D+A +L +D
Sbjct: 439 SSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVD 498

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           M      P+ V +  ++  F + +     I +L SM      P  +  +++++
Sbjct: 499 MRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIE 551



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 85/174 (48%), Gaps = 7/174 (4%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           + H  C + +  E+ +L   M+ +G   DV+    ++      R + +A R+++++ + G
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
            +PD F      AY  LI+G CK+ ++ +A  +   +      P+ VTYNI I +LC+  
Sbjct: 155 -QPDVF------AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++D A  +   +      P  + +T L+ + + +    + ++L+  M  R + P
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKP 261



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           I    C++    E+  LL+ M++ G  PD      ++    LI G   +  +  A  + +
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPD------VILCTKLIKGFFTLRNIPKAVRVME 148

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            L + G  P+V  YN  I+  C   ++D A  +   M  K  +P+ V +  ++ S   + 
Sbjct: 149 ILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +    +++L  +   N  P     +I+++
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIE 236


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 6/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPNT TY  +ID  CK+G +D A  L  +MK ++I P++ TY++LI   C  +       
Sbjct: 210 KPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRT 269

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF+EM+   +  +V TFN ++D LCK  K+++A  ++  MI+ GV PD      ++ Y  
Sbjct: 270 LFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPD------VITYNM 323

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG    G++  ARE+  S+    + P++++YNI I+     +++D+A  +  ++  KG
Sbjct: 324 IIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKG 383

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P+ V    L+        T         M     +P       ++    KN +   ++
Sbjct: 384 LKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAM 443

Query: 253 PQFNR 257
             F++
Sbjct: 444 SHFHK 448



 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C+PN V Y T+++GLCK+G   KA +L   M+  +  PN  TY  +I  FC     + A
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGA 232

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L  EM  + +  D+ T++ ++D LCK  + +    L   MI   + P      N+  +
Sbjct: 233 TSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYP------NVCTF 286

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDGLCK GK+++A E+ + +   G+ P+V+TYN+ I       Q+D+A ++F  M  
Sbjct: 287 NSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMIN 346

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           K + P+ + +  L+  + R+ +  + +++ R + ++ + P
Sbjct: 347 KSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKP 386



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 29/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN IIDG    G VD+A+E+F  M +++I P++++YN LI+G+      +EA  +
Sbjct: 316 PDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQV 375

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             E+  +GL+  +VT NV++  L +  +   A    D M+  G  PD +           
Sbjct: 376 CREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFK 435

Query: 124 -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                              + NI  Y  +IDGLCK GKL  A    + L   GL P+V+T
Sbjct: 436 NGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVIT 495

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   I   C +  +D+A D+   ME  G   +   +  ++  F+R N+ S++   L  + 
Sbjct: 496 YTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIA 555

Query: 225 KRNVMPYASILSIIVDLLVKN 245
            ++    A+ + +++D++ ++
Sbjct: 556 GKSFSFEAATVELLMDIIAED 576



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 9/218 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDGNEAEYL 73
           N VT+ T+I GL  E  V  A  LF ++  ENI  PN V Y ++++G C      +A + 
Sbjct: 141 NEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKA-FD 199

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + +M++G  + +  T+ +++D  CK+  +D AT LL+ M Q  + PD F       Y  
Sbjct: 200 LLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIF------TYST 253

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK+ + +N R L   +    + PNV T+N  I  LC + +++ A ++   M  KG
Sbjct: 254 LIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKG 313

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V P+ + +  ++  +  + +  +  E+  SM  +++ P
Sbjct: 314 VDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEP 351



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 103/231 (44%), Gaps = 5/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +++ ++  +           LF ++    I  +    + +++  C  +  +    +
Sbjct: 70  PSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSV 129

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
                 +G+  + VTF  ++  L    K+ +A  L   +++  +     CE N V YG +
Sbjct: 130 LAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENI-----CEPNEVMYGTV 184

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLCK G  + A +L + + +    PN  TY I I A C D  +D A  L  +M+ K +
Sbjct: 185 MNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSI 244

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+   ++TL+ +  + ++   V  L   M   N+ P     + ++D L K
Sbjct: 245 PPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCK 295



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 52/100 (52%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY  +I G C+EG +D+AK++  +M+D     +  TYN ++ GF  +N  +E +  
Sbjct: 491 PDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAF 550

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
             E+  +    +  T  ++MD + ++  +      + L I
Sbjct: 551 LEEIAGKSFSFEAATVELLMDIIAEDPSITRKMHWIKLHI 590



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 86/233 (36%), Gaps = 51/233 (21%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A  LF QM      P+V +++ L+    +    +    LF E+    +       ++
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +++  C   + D    +L +  + G+        N V +  LI GL    K+K+A  L +
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGI------PYNEVTFTTLIRGLFAENKVKDAVHLFK 166

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            L R  +                                    PN V++ T+M    +K 
Sbjct: 167 KLVRENI----------------------------------CEPNEVMYGTVMNGLCKKG 192

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK-----------NEISLNSIP 253
            T K  +LLR M++ +  P     +I++D   K           NE+   SIP
Sbjct: 193 HTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIP 245


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 125/222 (56%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 131 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 190

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 191 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIP------NGVTFTTLIDGRC 244

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AHDL  +M +KG+ P+  
Sbjct: 245 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 304

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 305 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 346



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 104/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ +M  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 231 PNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 290

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D  T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 291 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYTAL 344

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +    L P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 345 ISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 404

Query: 194 APNCVIFTTLM 204
           AP+ V +  LM
Sbjct: 405 APSVVTYNVLM 415



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 160 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 219

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 220 LFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPD------LITYNT 273

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+  TY   I   C +  +D A +    M  + 
Sbjct: 274 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQEN 333

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M   ++ P     ++I++   K 
Sbjct: 334 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKK 386



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 195 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAME 254

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD F       Y  
Sbjct: 255 IYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF------TYTT 308

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M    
Sbjct: 309 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVD 368

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +    P
Sbjct: 369 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAP 406



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 90/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 115 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 168

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 169 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 228

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 229 LIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLP 266



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+T TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 370 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 12/204 (5%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRK-MDEATRLLD 110
           +Y ++IH  C     +EA+ L   ++ R G  S    F  I++     R  +   + L+ 
Sbjct: 7   SYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFATILETKGTQRSDIYVFSGLIT 66

Query: 111 LMIQGGVRPDAF-C-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMP 160
             ++ G   DA  C       ++ +    C  +++ L K+   K      + +   G   
Sbjct: 67  AYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 126

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++  +NI +H  C D  +  A  +F  +   G+ P+ V + TLM  +IR  +  +   L 
Sbjct: 127 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 186

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
            +M    V P     S++++ L K
Sbjct: 187 SAMLASGVQPDVYTYSVLINGLCK 210


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  T  TI++G C+EG +++A   F +MK+  ++PN+  +NSLI GF   ND +    
Sbjct: 551 KPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGE 610

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G++ DVVTF+ +M+       M     +   M++GG+ PD      I A+  
Sbjct: 611 VVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPD------IHAFSI 664

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVK 191
           L  G  + G+ + A ++   + + G+ PNVV Y   I   C+  +M KA  ++  M  + 
Sbjct: 665 LAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIV 724

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G++PN   + TL+  F    +  K  ELL+ M+ +NV+P    + +I D
Sbjct: 725 GLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIAD 773



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 12/210 (5%)

Query: 10  VVCKPNTV-----TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           V+C   T      +   +++GL + G   +A  +F  + +E   P+++TY +L+      
Sbjct: 331 VICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQ 390

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              +    L  ++   GL+ D + FN I++   ++  +D+A ++ + M + G +P A   
Sbjct: 391 KHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTA--- 447

Query: 125 INIVAYGCLIDGLCKIGKL-KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                +  LI G  KIGKL +++R L   L    L PN  T NI + A CN  ++++A +
Sbjct: 448 ---STFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWN 504

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
           +   M+  GV P+ V F TL  ++ R   T
Sbjct: 505 IVYKMQSYGVKPDVVTFNTLAKAYARIGST 534



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 43/265 (16%)

Query: 13  KPNTVTYNTIIDGLCKE-----------------------------------GFVDKAKE 37
           KP+ +TY T++  L ++                                   G +D+A +
Sbjct: 374 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 433

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM-DRGLQSDVVTFNVIMDEL 96
           +F +MK+    P   T+N+LI G+       E+  L   M+ D  LQ +  T N+++   
Sbjct: 434 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAW 493

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL-SQSLTR 155
           C  RK++EA  ++  M   GV+PD      +V +  L     +IG    A ++    +  
Sbjct: 494 CNQRKIEEAWNIVYKMQSYGVKPD------VVTFNTLAKAYARIGSTCTAEDMIIPRMLH 547

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
             + PNV T    ++  C + +M++A   F  M+  GV PN  +F +L+  F+  N+   
Sbjct: 548 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDG 607

Query: 216 VIELLRSMDKRNVMPYASILSIIVD 240
           V E++  M++  V P     S +++
Sbjct: 608 VGEVVDLMEEFGVKPDVVTFSTLMN 632



 Score = 43.9 bits (102), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 21/107 (19%), Positives = 49/107 (45%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GL + G+ + A  +  +L   G  P+++TY   + AL   +       L   +E  G
Sbjct: 348 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 407

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ ++F  ++ +        + +++   M +    P AS  + ++
Sbjct: 408 LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLI 454


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 8/223 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V YN  + GLCK G V+ A+  FL +   +  P+  TY +LIHGF  A   NEA  L
Sbjct: 555 PNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNL 614

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+++GL  ++ T+N +++ LCK+  +D A RL D +   G+ P      N+V Y  L
Sbjct: 615 RDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIP------NVVTYNIL 668

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G  + A +L   + + G+ P+++TY+  I+  C    +++A  L  +M+   V
Sbjct: 669 IDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNV 728

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
                 F+ L+   I+  +  K+ +L   M      P A I S
Sbjct: 729 DQTIATFSKLVEGCIQHGDVKKMSKLHNMM--HMACPSAGITS 769



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTYNT++ GLC+ G    A  L+  M    + PN V Y +L+ G     D + A  
Sbjct: 274 EPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALT 333

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ +++ RG+   +  FN +++ LCK  +MD A      M + G +PD       + Y  
Sbjct: 334 LWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDG------ITYRT 387

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L DG CK+G ++ A ++ + + +  + P++  YN  I  L   +++ K  DL  +M+ +G
Sbjct: 388 LSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRG 447

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++PN V +  L+  +  +    K       M  +   P   I S IV  L +
Sbjct: 448 LSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYR 499



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 120/237 (50%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N    N++I+G CK G V + + L + M+  ++ P+  +Y +L+ G+C     ++A  
Sbjct: 204 KMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFN 263

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+ +G++  VVT+N ++  LC+     +A RL  LM+Q GV P      N V Y  
Sbjct: 264 VCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTP------NEVGYCT 317

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGL K+G    A  L   +   G+  ++  +N  I+ LC   +MD A + F  ME  G
Sbjct: 318 LLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELG 377

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
             P+ + + TL   + +     +  ++   M+K  + P   +  S+IV L    +IS
Sbjct: 378 CKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKIS 434



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 41/281 (14%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +I G C +G +DKA   + +M  +   PNV+  + ++         +EA  L
Sbjct: 450 PNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANML 509

Query: 74  FIEMMDRGL-----------QSDV------------------------VTFNVIMDELCK 98
             +M+D  L            +D+                        V +N+ M  LCK
Sbjct: 510 LQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCK 569

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
           + K+++A R    +  G   PD F       Y  LI G    G +  A  L   +   GL
Sbjct: 570 SGKVNDARRFFLGLSHGSFTPDNF------TYCTLIHGFSAAGYVNEAFNLRDEMVNKGL 623

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +PN+ TYN  ++ LC    +D+A  LF  + +KG+ PN V +  L+  + +     + ++
Sbjct: 624 VPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALD 683

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           L   M K  + P     S +++   K      ++   N  K
Sbjct: 684 LRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMK 724



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 7/218 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T   +++  CK G V++A E   +M+      N V+YNSL+ G+    D   A+ +
Sbjct: 64  PDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGV 123

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
              M ++G+  + VT  +++   CK  K++EA ++L ++  + GV  D +      AYG 
Sbjct: 124 LKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEY------AYGA 177

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK+GK+ +A  +   + + GL  N+   N  I+  C + Q+ +   L + M    
Sbjct: 178 LIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLD 237

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   + TL+  + R   +SK   +   M ++ + P
Sbjct: 238 LKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEP 275



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +++GLCK G++D+A+ LF ++  + + PNVVTYN LI G+C +    EA  L
Sbjct: 625 PNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDL 684

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G+   ++T++ +++  CK   ++EA +LL+ M    V      +  I  +  L
Sbjct: 685 RGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNV------DQTIATFSKL 738

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTY-NITIHALCNDEQM 178
           ++G  + G +K   +L   +  A     + ++  + +  L N ++M
Sbjct: 739 VEGCIQHGDVKKMSKLHNMMHMACPSAGITSHKQMELSELSNAKEM 784



 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 54/107 (50%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L K G+  +A  +   + R  ++P+V T  I ++A C   ++++A +   +ME  G
Sbjct: 37  LLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLG 96

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              N V + +L+  ++   +      +L+ M ++ VM     L++++
Sbjct: 97  FELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLI 143


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  130 bits (327), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 8/215 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V+YN +I G CK   VD+A  LF +M  +N+ P +VTY SL+ G C +   +    L 
Sbjct: 244 NVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELI 303

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM DRG+ +DV+T+N ++D LCKN  +D A  L + M             + + +  L+
Sbjct: 304 DEMHDRGIPADVITYNSLIDGLCKNGHLDRAIALFNKMKDX--------RFDRLTFTILL 355

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK G+LK+A+E+ Q L       +V  YN+ I+  C    +++A  +   ME  G  
Sbjct: 356 DGLCKGGRLKDAQEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCI 415

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           P+ V F  ++ +   K+E  K  +LL  M  R ++
Sbjct: 416 PSAVTFEIIINALFEKDENDKAEKLLHEMIARGLL 450



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 116/232 (50%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  + +N I+D          A  L  +++ + I P+  T N L++ FC+    N    +
Sbjct: 68  PPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNILMNCFCHMGQINFGFSV 127

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++ RG Q   +TF  ++  LC   ++++A    D ++  G++ D       V+YG L
Sbjct: 128 LAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQ------VSYGTL 181

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G+CKIG  + A +L + +      PNV  YN  I ALC  + + +A+ LF +M  KG+
Sbjct: 182 INGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGI 241

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + N V +  ++  F +     + + L + M ++N++P       ++D L K+
Sbjct: 242 SANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKS 293



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 6/247 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T N +++  C  G ++    +  ++      P+ +T+ +LI G C     N+A +
Sbjct: 102 QPDFFTLNILMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALH 161

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              +++ +G++ D V++  +++ +CK      A +L+  +     +P      N+  Y  
Sbjct: 162 FHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKP------NVEMYNT 215

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK   +  A  L   +T  G+  NVV+YNI I   C  + +D+A +LF +M  K 
Sbjct: 216 IIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKN 275

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           + P  V + +LM    +    S V EL+  M  R +       + ++D L KN     +I
Sbjct: 276 MVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAI 335

Query: 253 PQFNRQK 259
             FN+ K
Sbjct: 336 ALFNKMK 342


>gi|297842697|ref|XP_002889230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335071|gb|EFH65489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 580

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y  +++ LCK G V  A +L  +M+D     N VTYN+L+ G C     N++   
Sbjct: 142 PDASAYTYLVNQLCKRGNVGYAMQLVEKMEDHGFPSNTVTYNALVRGLCMLGSLNQSLQF 201

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +M RGL  +  T++ +++   K R  D+A +LLD +I  G +P      N+V+Y  L
Sbjct: 202 VERLMQRGLAPNAFTYSFLLEAAYKERGTDQAVKLLDEIIAKGGQP------NLVSYNVL 255

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK G+  +A +L + L   G   NVV+YNI +  LC D + D+A+ L  +M+    
Sbjct: 256 LTGFCKEGRTDDAMKLFRELPVKGFKANVVSYNILLRCLCCDGRWDEANSLLAEMDGGDR 315

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           AP+ V +  L+ S      T + +++L+ M K
Sbjct: 316 APSVVTYNILINSLAFHGRTEQAMQVLKEMSK 347



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 9/230 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V+YN ++ G CKEG  D A +LF ++  +    NVV+YN L+   C     +EA  
Sbjct: 246 QPNLVSYNVLLTGFCKEGRTDDAMKLFRELPVKGFKANVVSYNILLRCLCCDGRWDEANS 305

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM        VVT+N++++ L  + + ++A ++L  M +G      F  +   +Y  
Sbjct: 306 LLAEMDGGDRAPSVVTYNILINSLAFHGRTEQAMQVLKEMSKG--HHHQF-RVTATSYNP 362

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK GK+    +    +      PN  TY+  I ALC  E   K  + F  ++   
Sbjct: 363 VIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYS-AIGALC--EHNGKVQEAFYIIQSLS 419

Query: 193 VAPNCV---IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
               C     + +++ S  RK  T    +LL  M +    P A   S ++
Sbjct: 420 NKQKCCTHDFYKSVITSMCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALI 469



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 33/188 (17%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------FCE------- 124
           G + +V     ++ +LCK  ++ +A R+++LM+  G+ PDA          C+       
Sbjct: 104 GHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYA 163

Query: 125 -------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
                         N V Y  L+ GLC +G L  + +  + L + GL PN  TY+  + A
Sbjct: 164 MQLVEKMEDHGFPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQRGLAPNAFTYSFLLEA 223

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRN 227
              +   D+A  L  ++  KG  PN V +  L+  F ++  T   ++L R +     K N
Sbjct: 224 AYKERGTDQAVKLLDEIIAKGGQPNLVSYNVLLTGFCKEGRTDDAMKLFRELPVKGFKAN 283

Query: 228 VMPYASIL 235
           V+ Y  +L
Sbjct: 284 VVSYNILL 291



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 111/297 (37%), Gaps = 68/297 (22%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V+YN ++  LC +G  D+A  L  +M   +  P+VVTYN LI+   +     +A  
Sbjct: 281 KANVVSYNILLRCLCCDGRWDEANSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQAMQ 340

Query: 73  LFIEM---MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD--------A 121
           +  EM        +    ++N ++  LCK  K+D   + LD MI    +P+        A
Sbjct: 341 VLKEMSKGHHHQFRVTATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYSAIGA 400

Query: 122 FCEIN--------IVA-------------YGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
            CE N        I+              Y  +I  +C+ G    A +L   +TR G  P
Sbjct: 401 LCEHNGKVQEAFYIIQSLSNKQKCCTHDFYKSVITSMCRKGNTFAAFQLLYEMTRCGFDP 460

Query: 161 NVVTY------------------------------------NITIHALCNDEQMDKAHDL 184
           +  TY                                    N  I  LC   + D A ++
Sbjct: 461 DAHTYSALIRGLCLEGMFIGAMEVLSIMEESEYHKPTVDNFNAMILGLCKIRRTDLALEV 520

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           F  M  K   PN   +  ++     ++E     E+L  +  R V+   ++  I++  
Sbjct: 521 FEMMVGKKRMPNETTYAIIVEGIAHEDELELAKEVLEELRSRKVIGQNAVDRIVMQF 577



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT---YNSLIHGFCYANDGN 68
           CKPN  TY+ I   LC+     K +E F  ++  +      T   Y S+I   C   +  
Sbjct: 388 CKPNEGTYSAI-GALCEHN--GKVQEAFYIIQSLSNKQKCCTHDFYKSVITSMCRKGNTF 444

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  L  EM   G   D  T++ ++  LC       A  +L +M +       + +  + 
Sbjct: 445 AAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFIGAMEVLSIMEE-----SEYHKPTVD 499

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  +I GLCKI +   A E+ + +     MPN  TY I +  + ++++++ A ++  ++
Sbjct: 500 NFNAMILGLCKIRRTDLALEVFEMMVGKKRMPNETTYAIIVEGIAHEDELELAKEVLEEL 559

Query: 189 EVKGV 193
             + V
Sbjct: 560 RSRKV 564



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           L+ ++  G +P      N+     L+  LCK  +LK A  + + +  +G++P+   Y   
Sbjct: 97  LECLVTDGHKP------NVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYL 150

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           ++ LC    +  A  L   ME  G   N V +  L+         ++ ++ +  + +R +
Sbjct: 151 VNQLCKRGNVGYAMQLVEKMEDHGFPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQRGL 210

Query: 229 MPYASILSIIVDLLVK 244
            P A   S +++   K
Sbjct: 211 APNAFTYSFLLEAAYK 226


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P      T+I GLCK G   KA EL+ Q  ++    +  T N+L+HG C A   +EA  +
Sbjct: 468 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 527

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E++ RG   D V++N ++   C  +K+DEA   LD M++ G++PD +       Y  L
Sbjct: 528 QKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNY------TYSIL 581

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL  + K++ A +      R G++P+V TY++ I   C  E+ ++  + F +M  K V
Sbjct: 582 ICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNV 641

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PN V++  L+ ++ R    S  +EL   M  + + P ++  + ++
Sbjct: 642 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 687



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G  C  + V+YNT+I G C +  +D+A     +M    + P+  TY+ LI G    N  
Sbjct: 532 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKV 591

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA   + +    G+  DV T++V++D  CK  + +E     D M+   V+P      N 
Sbjct: 592 EEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQP------NT 645

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI   C+ G+L  A EL + +   G+ PN  TY   I  +    ++++A  LF +
Sbjct: 646 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 705

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M ++G+ PN   +T L+  + +  +  KV  LLR M  +NV P
Sbjct: 706 MRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP 748



 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 11/242 (4%)

Query: 8   FGVVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           F VVCK   P+   + T I+  CK G V++A +LF +M++  + PNVVT+N++I G    
Sbjct: 249 FDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMC 308

Query: 65  NDGNEAEYLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
              +EA ++F E M++RG++  ++T+++++  L + +++ +A  +L  M + G  P    
Sbjct: 309 GRYDEA-FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPP---- 363

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N++ Y  LID   + G L  A E+   +   GL     TYN  I   C + Q D A  
Sbjct: 364 --NVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAER 421

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           L  +M   G   N   FT+++            +  +  M  RN+ P   +L+ ++  L 
Sbjct: 422 LLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLC 481

Query: 244 KN 245
           K+
Sbjct: 482 KH 483



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 12/222 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +IDG CK    ++ +E F +M  +N+ PN V YN LI  +C +   + A  L
Sbjct: 608 PDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL 667

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M  +G+  +  T+  ++  +    +++EA  L + M   G+ P      N+  Y  L
Sbjct: 668 REDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP------NVFHYTAL 721

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K+G++     L + +    + PN +TY + I     D  + +A  L  +M  KG+
Sbjct: 722 IDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGI 781

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            P+ + +   +  ++++     V+E  +  D+ N   YA+I+
Sbjct: 782 VPDSITYKEFIYGYLKQG---GVLEAFKGSDEEN---YAAII 817



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T T N ++ GLC+ G +D+A  +  ++       + V+YN+LI G C     +EA    
Sbjct: 504 DTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFL 563

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ RGL+ D  T+++++  L    K++EA +  D   + G+ PD +       Y  +I
Sbjct: 564 DEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVY------TYSVMI 617

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK  + +  +E    +    + PN V YN  I A C   ++  A +L  DM+ KG++
Sbjct: 618 DGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGIS 677

Query: 195 PNCVIFTTLMP--SFIRKNETSKVI--ELLRSMDKRNVMPYASIL 235
           PN   +T+L+   S I + E +K++  E+     + NV  Y +++
Sbjct: 678 PNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 722



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 115/263 (43%), Gaps = 31/263 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YN +ID   + G ++KA E+   M  + ++    TYN+LI G+C     + AE L
Sbjct: 363 PNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERL 422

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
             EM+  G   +  +F  ++  LC +   D A R +  M+   + P       +++  C 
Sbjct: 423 LKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCK 482

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       L+ GLC+ GKL  A  + + +   G + + V+
Sbjct: 483 HGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVS 542

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           YN  I   C  +++D+A  +FLD  VK G+ P+   ++ L+      N+  + I+     
Sbjct: 543 YNTLISGCCGKKKLDEAF-MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC 601

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
            +  ++P     S+++D   K E
Sbjct: 602 KRNGMLPDVYTYSVMIDGCCKAE 624



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 6/159 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNTV YN +I   C+ G +  A EL   MK + I+PN  TY SLI G    +   EA+ 
Sbjct: 642 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 701

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   GL+ +V  +  ++D   K  +M +   LL  M    V P      N + Y  
Sbjct: 702 LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP------NKITYTV 755

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           +I G  + G +  A  L   +   G++P+ +TY   I+ 
Sbjct: 756 MIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 794


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            YNT++ G C+ G +D A+ L   M    + P+  TY  +I G C      EA  L  +M
Sbjct: 115 AYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDM 171

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           + RG Q  VVT+ V+++ +CK+    +A  +LD M   G  P      NIV Y  +I+G+
Sbjct: 172 LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTP------NIVTYNVIINGM 225

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C+ G++ +ARE    L+  G  P+ V+Y   +  LC  ++ +   +LF +M  K   PN 
Sbjct: 226 CREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNE 285

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V F  L+  F R     + I++L  M         ++ +I+++ + K 
Sbjct: 286 VTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ 333



 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 116/219 (52%), Gaps = 9/219 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N VTYN +++G C +G VD A ELF  M      PN +TY +L+ G C A   + A 
Sbjct: 421 CEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAA 477

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +    +VVTFNV++   C+   MDEA  L++ M++ G  P      N++ Y 
Sbjct: 478 ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTP------NLITYN 531

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG+ K    + A EL   L   G+ P++VTY+  I  L  ++++++A  +F  ++  
Sbjct: 532 TLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 591

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P  VI+  ++ +  ++  T   I+    M     MP
Sbjct: 592 GMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMP 630



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 6/222 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           + + CKPNT+TY T++ GLC    +D A EL  +M  ++  PNVVT+N L+  FC     
Sbjct: 449 YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLM 508

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +EA  L  +MM+ G   +++T+N ++D + K+   +EA  LL  ++  GV PD      I
Sbjct: 509 DEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPD------I 562

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  +I  L +  +++ A ++   +   G+ P  V YN  + ALC     D A D F  
Sbjct: 563 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 622

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           M   G  PN + + TL+     ++   +  +LLR +  R V+
Sbjct: 623 MVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 664



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 122/255 (47%), Gaps = 30/255 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN II+G+C+EG VD A+E   ++      P+ V+Y +++ G C A    + E
Sbjct: 211 CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE 270

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------------ 119
            LF EMM++    + VTF++++   C+   ++ A ++L+ M   G               
Sbjct: 271 ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 330

Query: 120 -------DAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                  DAF          C  + ++Y  ++ GLC+  + ++A+EL + + R    PN 
Sbjct: 331 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 390

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VT+N  I  LC    +++A  L   M   G   N V +  L+  F  +      +EL  S
Sbjct: 391 VTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYS 450

Query: 223 MD-KRNVMPYASILS 236
           M  K N + Y ++L+
Sbjct: 451 MPCKPNTITYTTLLT 465



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 9/245 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T++Y T++ GLC+    + AKEL  +M  +N  PN VT+N+ I   C      +A 
Sbjct: 351 CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQAT 410

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M + G + ++VT+N +++  C   ++D A  L   M          C+ N + Y 
Sbjct: 411 MLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---------CKPNTITYT 461

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLC   +L  A EL   + +    PNVVT+N+ +   C    MD+A +L   M   
Sbjct: 462 TLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEH 521

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  PN + + TL+    +   + + +ELL  +    V P     S I+ +L + +    +
Sbjct: 522 GCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 581

Query: 252 IPQFN 256
           I  F+
Sbjct: 582 IKMFH 586



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 9/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+NT I  LC++G +++A  L  QM +     N+VTYN+L++GFC     + A 
Sbjct: 386 CPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSAL 445

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M     + + +T+  ++  LC   ++D A  LL  M+Q    P      N+V + 
Sbjct: 446 ELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAP------NVVTFN 496

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G +  A EL + +   G  PN++TYN  +  +  D   ++A +L   +   
Sbjct: 497 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSN 556

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           GV+P+ V +++++    R++   + I++   +    + P A I + I+  L K
Sbjct: 557 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCK 609



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY  +++ +CK     +A E+  +M+ +   PN+VTYN +I+G C     ++A 
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                +   G Q D V++  ++  LC  ++ ++   L   M++    P      N V + 
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMP------NEVTFD 289

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G ++ A ++ + ++  G   N    NI I+ +C   ++D A     +M   
Sbjct: 290 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 349

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G +P+ + +TT++    R        ELL+ M ++N  P
Sbjct: 350 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPP 388



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 9/180 (5%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +D  EA  L      RG   DV     ++  LC+  +  +A R+L    + G   D F  
Sbjct: 57  DDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVF-- 114

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
               AY  L+ G C+ G+L  AR L  S+  A   P+  TY   I  LC+  ++ +A  L
Sbjct: 115 ----AYNTLVAGYCRYGQLDAARRLIASMPVA---PDAYTYTPIIRGLCDRGRVGEALSL 167

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             DM  +G  P+ V +T L+ +  +     + +E+L  M  +   P     ++I++ + +
Sbjct: 168 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 227



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC--LIDGLCKIGKLKNAR 147
           N  +  L     + EA RL+D     G  PD         Y C  LI  LC+ G+  +A 
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDV--------YLCTKLIRNLCRRGRTSDAA 98

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
            + ++  R+G   +V  YN  +   C   Q+D A  L   M    VAP+   +T ++   
Sbjct: 99  RVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGL 155

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             +    + + LL  M  R   P     +++++ + K+
Sbjct: 156 CDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKS 193


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P      T+I GLCK G   KA EL+ Q  ++    +  T N+L+HG C A   +EA  +
Sbjct: 457 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 516

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E++ RG   D V++N ++   C  +K+DEA   LD M++ G++PD +       Y  L
Sbjct: 517 QKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNY------TYSIL 570

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL  + K++ A +      R G++P+V TY++ I   C  E+ ++  + F +M  K V
Sbjct: 571 ICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNV 630

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PN V++  L+ ++ R    S  +EL   M  + + P ++  + ++
Sbjct: 631 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 676



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G  C  + V+YNT+I G C +  +D+A     +M    + P+  TY+ LI G    N  
Sbjct: 521 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKV 580

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA   + +    G+  DV T++V++D  CK  + +E     D M+   V+P      N 
Sbjct: 581 EEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQP------NT 634

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI   C+ G+L  A EL + +   G+ PN  TY   I  +    ++++A  LF +
Sbjct: 635 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 694

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M ++G+ PN   +T L+  + +  +  KV  LLR M  +NV P
Sbjct: 695 MRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP 737



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 11/242 (4%)

Query: 8   FGVVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           F VVCK   P+   + T I+  CK G V++A +LF +M++  + PNVVT+N++I G    
Sbjct: 238 FDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMC 297

Query: 65  NDGNEAEYLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
              +EA ++F E M++RG++  ++T+++++  L + +++ +A  +L  M + G  P    
Sbjct: 298 GRYDEA-FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPP---- 352

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N++ Y  LID   + G L  A E+   +   GL     TYN  I   C + Q D A  
Sbjct: 353 --NVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAER 410

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           L  +M   G   N   FT+++            +  +  M  RN+ P   +L+ ++  L 
Sbjct: 411 LLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLC 470

Query: 244 KN 245
           K+
Sbjct: 471 KH 472



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 12/222 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +IDG CK    ++ +E F +M  +N+ PN V YN LI  +C +   + A  L
Sbjct: 597 PDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL 656

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M  +G+  +  T+  ++  +    +++EA  L + M   G+ P      N+  Y  L
Sbjct: 657 REDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP------NVFHYTAL 710

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K+G++     L + +    + PN +TY + I     D  + +A  L  +M  KG+
Sbjct: 711 IDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGI 770

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            P+ + +   +  ++++     V+E  +  D+ N   YA+I+
Sbjct: 771 VPDSITYKEFIYGYLKQG---GVLEAFKGSDEEN---YAAII 806



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T T N ++ GLC+ G +D+A  +  ++       + V+YN+LI G C     +EA    
Sbjct: 493 DTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFL 552

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ RGL+ D  T+++++  L    K++EA +  D   + G+ PD +       Y  +I
Sbjct: 553 DEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVY------TYSVMI 606

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK  + +  +E    +    + PN V YN  I A C   ++  A +L  DM+ KG++
Sbjct: 607 DGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGIS 666

Query: 195 PNCVIFTTLMP--SFIRKNETSKVI--ELLRSMDKRNVMPYASIL 235
           PN   +T+L+   S I + E +K++  E+     + NV  Y +++
Sbjct: 667 PNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 711



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 115/263 (43%), Gaps = 31/263 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YN +ID   + G ++KA E+   M  + ++    TYN+LI G+C     + AE L
Sbjct: 352 PNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERL 411

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
             EM+  G   +  +F  ++  LC +   D A R +  M+   + P       +++  C 
Sbjct: 412 LKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCK 471

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       L+ GLC+ GKL  A  + + +   G + + V+
Sbjct: 472 HGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVS 531

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           YN  I   C  +++D+A  +FLD  VK G+ P+   ++ L+      N+  + I+     
Sbjct: 532 YNTLISGCCGKKKLDEAF-MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC 590

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
            +  ++P     S+++D   K E
Sbjct: 591 KRNGMLPDVYTYSVMIDGCCKAE 613



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 6/159 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNTV YN +I   C+ G +  A EL   MK + I+PN  TY SLI G    +   EA+ 
Sbjct: 631 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 690

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   GL+ +V  +  ++D   K  +M +   LL  M    V P      N + Y  
Sbjct: 691 LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP------NKITYTV 744

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           +I G  + G +  A  L   +   G++P+ +TY   I+ 
Sbjct: 745 MIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 783


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            YNT++ G C+ G +D A+ L   M    + P+  TY  +I G C      EA  L  +M
Sbjct: 115 AYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDM 171

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           + RG Q  VVT+ V+++ +CK+    +A  +LD M   G  P      NIV Y  +I+G+
Sbjct: 172 LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTP------NIVTYNVIINGM 225

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C+ G++ +ARE    L+  G  P+ V+Y   +  LC  ++ +   +LF +M  K   PN 
Sbjct: 226 CREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNE 285

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V F  L+  F R     + I++L  M         ++ +I+++ + K 
Sbjct: 286 VTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ 333



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 115/219 (52%), Gaps = 9/219 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N VTYN +++G C +G VD A ELF  M      PN +TY +L+ G C A   + A 
Sbjct: 421 CEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAA 477

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +    +VVTFNV++   C+   MDEA  L++ M++ G  P      N++ Y 
Sbjct: 478 ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTP------NLITYN 531

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG+      + A EL   L   G+ P++VTY+  I  L  ++++++A  +F  ++  
Sbjct: 532 TLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 591

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P  VI+  ++ +  ++  T   I+    M     MP
Sbjct: 592 GMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMP 630



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 122/255 (47%), Gaps = 30/255 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN II+G+C+EG VD A+E   ++      P+ V+Y +++ G C A    + E
Sbjct: 211 CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE 270

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP------------ 119
            LF EMM++    + VTF++++   C+   ++ A ++L+ M   G               
Sbjct: 271 ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 330

Query: 120 -------DAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                  DAF          C  + ++Y  ++ GLC+  + ++A+EL + + R    PN 
Sbjct: 331 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNE 390

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VT+N  I  LC    +++A  L   M   G   N V +  L+  F  +      +EL  S
Sbjct: 391 VTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYS 450

Query: 223 MD-KRNVMPYASILS 236
           M  K N + Y ++L+
Sbjct: 451 MPCKPNTITYTTLLT 465



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 6/222 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           + + CKPNT+TY T++ GLC    +D A EL  +M  ++  PNVVT+N L+  FC     
Sbjct: 449 YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLM 508

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +EA  L  +MM+ G   +++T+N ++D +  +   +EA  LL  ++  GV PD      I
Sbjct: 509 DEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPD------I 562

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  +I  L +  +++ A ++   +   G+ P  V YN  + ALC     D A D F  
Sbjct: 563 VTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 622

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           M   G  PN + + TL+     ++   +  +LLR +  R V+
Sbjct: 623 MVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 664



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 9/245 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T++Y T++ GLC+    + AKEL  +M  +N  PN VT+N+ I   C      +A 
Sbjct: 351 CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQAT 410

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M + G + ++VT+N +++  C   ++D A  L   M          C+ N + Y 
Sbjct: 411 MLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---------CKPNTITYT 461

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLC   +L  A EL   + +    PNVVT+N+ +   C    MD+A +L   M   
Sbjct: 462 TLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEH 521

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  PN + + TL+        + + +ELL  +    V P     S I+ +L + +    +
Sbjct: 522 GCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 581

Query: 252 IPQFN 256
           I  F+
Sbjct: 582 IKMFH 586



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 9/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+NT I  LC++G +++A  L  QM +     N+VTYN+L++GFC     + A 
Sbjct: 386 CPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSAL 445

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M     + + +T+  ++  LC   ++D A  LL  M+Q    P      N+V + 
Sbjct: 446 ELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAP------NVVTFN 496

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G +  A EL + +   G  PN++TYN  +  + ND   ++A +L   +   
Sbjct: 497 VLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSN 556

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           GV+P+ V +++++    R++   + I++   +    + P A I + I+  L K
Sbjct: 557 GVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCK 609



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY  +++ +CK     +A E+  +M+ +   PN+VTYN +I+G C     ++A 
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                +   G Q D V++  ++  LC  ++ ++   L   M++    P      N V + 
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMP------NEVTFD 289

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G ++ A ++ + ++  G   N    NI I+ +C   ++D A     +M   
Sbjct: 290 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 349

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G +P+ + +TT++    R        ELL+ M ++N  P
Sbjct: 350 GCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPP 388



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 9/180 (5%)

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +D  EA  L      RG   DV     ++  LC+  +  +A R+L    + G   D F  
Sbjct: 57  DDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVF-- 114

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
               AY  L+ G C+ G+L  AR L  S+  A   P+  TY   I  LC+  ++ +A  L
Sbjct: 115 ----AYNTLVAGYCRYGQLDAARRLIASMPVA---PDAYTYTPIIRGLCDRGRVGEALSL 167

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             DM  +G  P+ V +T L+ +  +     + +E+L  M  +   P     ++I++ + +
Sbjct: 168 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 227



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC--LIDGLCKIGKLKNAR 147
           N  +  L     + EA RL+D     G  PD         Y C  LI  LC+ G+  +A 
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDV--------YLCTKLIRNLCRRGRTSDAA 98

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
            + ++  R+G   +V  YN  +   C   Q+D A  L   M    VAP+   +T ++   
Sbjct: 99  RVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGL 155

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             +    + + LL  M  R   P     +++++ + K+
Sbjct: 156 CDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKS 193


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 6/235 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P+  TYNT+I GLCK+G++  A+EL  +M+ +   PNV+TY  LI  FC      E
Sbjct: 8   VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEE 67

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  +  EM  +GL  + V +N ++  LCK+ K+ +A  +   M   G +PD F       
Sbjct: 68  ARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF------T 121

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LI GLCK+ K + A  L Q +   G++ N +TYN  IHA      M +A  L  DM 
Sbjct: 122 FNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDML 181

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +G   + + +  L+ +  R     K + L   M  + + P     +I+++ L +
Sbjct: 182 FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 236



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 112/231 (48%), Gaps = 8/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V YN +I  LCK+  V  A  +F  M  +   P++ T+NSLI G C  N   EA  L+
Sbjct: 83  NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 142

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCL 133
            +M+  G+ ++ +T+N ++    +   M EA +L+ D++ +G       C ++ + Y  L
Sbjct: 143 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG-------CPLDDITYNGL 195

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LC+ G ++    L + +   GL PN ++ NI I+ LC    +  A +   DM  +G+
Sbjct: 196 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL 255

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V + +L+    +     + + L   +    + P A   + ++    K
Sbjct: 256 TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCK 306



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 6/199 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            NT+TYNT+I    + G + +A +L   M       + +TYN LI   C A +  +   L
Sbjct: 152 ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLAL 211

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +MM +GL  + ++ N++++ LC+   +  A   L  MI  G+ PD      IV Y  L
Sbjct: 212 FEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD------IVTYNSL 265

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK G+ + A  L   L   G+ P+ +TYN  I   C +   D AH L       G 
Sbjct: 266 INGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF 325

Query: 194 APNCVIFTTLMPSFIRKNE 212
            PN V +  L+ +FI++ +
Sbjct: 326 IPNEVTWYILVSNFIKEGD 344



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + +TYN +I  LC+ G ++K   LF  M  + +NPN ++ N LI+G C   +   A 
Sbjct: 185 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHAL 244

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               +M+ RGL  D+VT+N +++ LCK  +  EA  L D +   G+ PDA      + Y 
Sbjct: 245 EFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA------ITYN 298

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
            LI   CK G   +A  L      +G +PN VT+ I +
Sbjct: 299 TLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILV 336



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 8/149 (5%)

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM-IQGGVRPDAFCEINIVAYGCLI 134
            M+  G   D+ T+N ++  LCK   +  A  L++ M I+G       CE N++ Y  LI
Sbjct: 4   SMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG-------CEPNVITYTILI 56

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           D  CK G+L+ AR +   ++  GL  N V YN  I ALC DE++  A ++F DM  KG  
Sbjct: 57  DRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCK 116

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           P+   F +L+    + N+  + + L + M
Sbjct: 117 PDIFTFNSLIFGLCKVNKFEEALGLYQDM 145



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 52/107 (48%)

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           + +S+   G  P++ TYN  I  LC    +  A +L  +M++KG  PN + +T L+  F 
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255
           ++    +   +L  M  + +   A   + ++  L K+E   +++  F
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMF 107


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P      T+I GLCK G   KA EL+ Q  ++    +  T N+L+HG C A   +EA  +
Sbjct: 481 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 540

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E++ RG   D V++N ++   C  +K+DEA   LD M++ G++PD +       Y  L
Sbjct: 541 QKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNY------TYSIL 594

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL  + K++ A +      R G++P+V TY++ I   C  E+ ++  + F +M  K V
Sbjct: 595 ICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNV 654

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PN V++  L+ ++ R    S  +EL   M  + + P ++  + ++
Sbjct: 655 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G  C  + V+YNT+I G C +  +D+A     +M    + P+  TY+ LI G    N  
Sbjct: 545 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKV 604

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA   + +    G+  DV T++V++D  CK  + +E     D M+   V+P      N 
Sbjct: 605 EEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQP------NT 658

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI   C+ G+L  A EL + +   G+ PN  TY   I  +    ++++A  LF +
Sbjct: 659 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 718

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M ++G+ PN   +T L+  + +  +  KV  LLR M  +NV P
Sbjct: 719 MRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP 761



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 11/242 (4%)

Query: 8   FGVVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           F VVCK   P+   + T I+  CK G V++A +LF +M++  + PNVVT+N++I G    
Sbjct: 262 FDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMC 321

Query: 65  NDGNEAEYLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
              +EA ++F E M++RG++  ++T+++++  L + +++ +A  +L  M + G  P    
Sbjct: 322 GRYDEA-FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPP---- 376

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N++ Y  LID   + G L  A E+   +   GL     TYN  I   C + Q D A  
Sbjct: 377 --NVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAER 434

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           L  +M   G   N   FT+++            +  +  M  RN+ P   +L+ ++  L 
Sbjct: 435 LLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLC 494

Query: 244 KN 245
           K+
Sbjct: 495 KH 496



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 12/222 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +IDG CK    ++ +E F +M  +N+ PN V YN LI  +C +   + A  L
Sbjct: 621 PDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL 680

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M  +G+  +  T+  ++  +    +++EA  L + M   G+ P      N+  Y  L
Sbjct: 681 REDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP------NVFHYTAL 734

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K+G++     L + +    + PN +TY + I     D  + +A  L  +M  KG+
Sbjct: 735 IDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGI 794

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            P+ + +   +  ++++     V+E  +  D+ N   YA+I+
Sbjct: 795 VPDSITYKEFIYGYLKQG---GVLEAFKGSDEEN---YAAII 830



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T T N ++ GLC+ G +D+A  +  ++       + V+YN+LI G C     +EA    
Sbjct: 517 DTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFL 576

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ RGL+ D  T+++++  L    K++EA +  D   + G+ PD +       Y  +I
Sbjct: 577 DEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVY------TYSVMI 630

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG CK  + +  +E    +    + PN V YN  I A C   ++  A +L  DM+ KG++
Sbjct: 631 DGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGIS 690

Query: 195 PNCVIFTTLMP--SFIRKNETSKVI--ELLRSMDKRNVMPYASIL 235
           PN   +T+L+   S I + E +K++  E+     + NV  Y +++
Sbjct: 691 PNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 735



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 115/263 (43%), Gaps = 31/263 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YN +ID   + G ++KA E+   M  + ++    TYN+LI G+C     + AE L
Sbjct: 376 PNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERL 435

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
             EM+  G   +  +F  ++  LC +   D A R +  M+   + P       +++  C 
Sbjct: 436 LKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCK 495

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       L+ GLC+ GKL  A  + + +   G + + V+
Sbjct: 496 HGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVS 555

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           YN  I   C  +++D+A  +FLD  VK G+ P+   ++ L+      N+  + I+     
Sbjct: 556 YNTLISGCCGKKKLDEAF-MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC 614

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
            +  ++P     S+++D   K E
Sbjct: 615 KRNGMLPDVYTYSVMIDGCCKAE 637



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 6/159 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PNTV YN +I   C+ G +  A EL   MK + I+PN  TY SLI G    +   EA+ 
Sbjct: 655 QPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 714

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM   GL+ +V  +  ++D   K  +M +   LL  M    V P      N + Y  
Sbjct: 715 LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP------NKITYTV 768

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           +I G  + G +  A  L   +   G++P+ +TY   I+ 
Sbjct: 769 MIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYG 807


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY++II  LCK   +DKA E+   M    + PN  TYNS++HG+C +    EA   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ DVVT+N +MD LCKN +  EA ++ D M + G++P+      I  YG L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPE------ITTYGTL 345

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + R G+ PN   ++I I A     ++D+A  +F  M  +G+
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V + T++    +       +     M    + P
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 8/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y T+I+G  KEG +DKA   + +M D  I PNVVTY+S+I   C A   ++A 
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G+  +  T+N I+   C + +  EA   L  M   GV PD      +V Y 
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD------VVTYN 308

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK G+   AR++  S+T+ GL P + TY   +        + + H L LD+ V+
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL-LDLMVR 367

Query: 192 -GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            G+ PN  +F+ L+ ++ ++ +  + + +   M ++ + P       ++ +L K+
Sbjct: 368 NGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422



 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNE 69
           C PN  +YN ++ GLC E    +A EL   M D+  +  P+VV+Y ++I+GF    D ++
Sbjct: 158 CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   + EM+DRG+  +VVT++ I+  LCK + MD+A  +L  M++ GV P      N   
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP------NCRT 271

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++ G C  G+ K A    + +   G+ P+VVTYN  +  LC + +  +A  +F  M 
Sbjct: 272 YNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMT 331

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +G+ P    + TL+  +  K    ++  LL  M +  + P   + SI++
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI 381



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 5/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +I   C  G +D        +  +    + + +  L+ G C     ++A  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M + G   +V ++N+++  LC   +  EA  LL +M   G      C  ++V+Y  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG----GDCPPDVVSYTT 204

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G  K G L  A      +   G++PNVVTY+  I ALC  + MDKA ++   M   G
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PNC  + +++  +    +  + I  L+ M    V P     + ++D L KN
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TY T++ G   +G + +   L   M    I+PN   ++ LI  +      ++A  
Sbjct: 336 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAML 395

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M  +GL  D VT+  ++  LCK+ ++++A R  + MI   + P      NIV Y  
Sbjct: 396 VFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG-----NIV-YNS 449

Query: 133 LIDGLCKIGKLKNARE 148
           LI  LC   K   A++
Sbjct: 450 LIHSLCIFDKWDKAKD 465



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 40/63 (63%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTY T+I  LCK G V+ A   F QM DE ++P  + YNSLIH  C  +  ++A+  
Sbjct: 407 PDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDY 466

Query: 74  FIE 76
           F++
Sbjct: 467 FLK 469


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 106/191 (55%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A +L
Sbjct: 228 PNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 287

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK+  +D A      MIQ   R D       V Y  L
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDD------VVYTAL 341

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G   +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 342 ISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 401

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 402 VPSVVTYNVLM 412



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 128 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 187

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  K+D+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVP------NSVTFTTLIDGHC 241

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AH L  +M +KG+ P+ +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKI 301

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
            +TTL+    +  +     E  + M + N      + + ++  L +   S+++
Sbjct: 302 TYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDA 354



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 157 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANE 216

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 217 LFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 270

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  GL P+ +TY   I   C D  +D A +    M  + 
Sbjct: 271 LIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQEN 330

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              + V++T L+    R+  +    ++LR M    + P A   ++I++   K 
Sbjct: 331 TRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 383



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 192 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAME 251

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 252 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDK------ITYTT 305

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +     + V Y   I  LC +     A  +  +M   G
Sbjct: 306 LIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVG 365

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 366 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 403



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRP------SVVSYNT 165

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + ++D A++LF +M VKG
Sbjct: 166 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKG 225

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 226 LVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 263



 Score = 44.3 bits (103), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 367 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWG 155

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 156 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 207


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 103/191 (53%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +IDGLCK   V  A+EL   M      PN + Y++LI GFC     + A+ +
Sbjct: 442 PNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEV 501

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+ M   G    V T+  ++D + K+R++D A ++L  M++    P      N+V Y  +
Sbjct: 502 FLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTP------NVVTYTAM 555

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLC+IG+ + A +L   +   G  PNVVTY   I  L    ++D +  LF+ M  KG 
Sbjct: 556 IDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGC 615

Query: 194 APNCVIFTTLM 204
           APN V +  L+
Sbjct: 616 APNYVTYRVLI 626



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 22/250 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N VTY  ++    K   + +A ++F +M D    PN +TY++L+ G C A +  +A 
Sbjct: 354 CSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKAC 413

Query: 72  YLFIEMMD-----------RGLQSD-----VVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
            ++ +++             G  +D     VVT+  ++D LCK  K+ +A  LLD M+  
Sbjct: 414 EVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSN 473

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G      CE N + Y  LIDG CK+GK+ NA+E+   +++ G +P V TY   I A+  D
Sbjct: 474 G------CEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKD 527

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            ++D A  +   M      PN V +T ++    R  E  K ++LL  M+++   P     
Sbjct: 528 RRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTY 587

Query: 236 SIIVDLLVKN 245
           + ++D L K+
Sbjct: 588 TALIDGLGKS 597



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 22/248 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T TY+ +I  LC+   V+KA  LF +MK   +NP+V TY  LI  FC A    +A   
Sbjct: 286 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSW 345

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G  ++VVT+  ++    K +++ +A+ + + MI      DA C  N + Y  L
Sbjct: 346 FDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMI------DAGCPPNTITYSAL 399

Query: 134 IDGLCKIGKLKNARELSQSLTRA----------------GLMPNVVTYNITIHALCNDEQ 177
           +DGLCK G+++ A E+   L                    + PNVVTY   I  LC   +
Sbjct: 400 VDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHK 459

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +  A +L   M   G  PN +I+  L+  F +  +     E+   M K   +P     + 
Sbjct: 460 VVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTS 519

Query: 238 IVDLLVKN 245
           ++D + K+
Sbjct: 520 LIDAMFKD 527



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 22/242 (9%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM----------------KDENIN 48
           NR     C PNT+TY+ ++DGLCK G + KA E++ ++                  ++I 
Sbjct: 382 NRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIA 441

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           PNVVTY +LI G C A+   +A+ L   M+  G + + + ++ ++D  CK  K+D A  +
Sbjct: 442 PNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEV 501

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
              M + G  P       +  Y  LID + K  +L  A ++   +  +   PNVVTY   
Sbjct: 502 FLRMSKCGYLP------TVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAM 555

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I  LC   +  KA  L   ME KG +PN V +T L+    +  +    ++L   M  +  
Sbjct: 556 IDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGC 615

Query: 229 MP 230
            P
Sbjct: 616 AP 617



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 30/242 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGLC+ G   KA +L   M+++  +PNVVTY +LI G   +   + + 
Sbjct: 545 CTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSL 604

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM--------IQG------GV 117
            LFI+M  +G   + VT+ V+++  C    +DEA  LL  M        +QG      G 
Sbjct: 605 QLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGF 664

Query: 118 RPDAFCEINIV-------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                  + ++              YG LID   K G+L+ A EL + +       N+ +
Sbjct: 665 SKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITS 724

Query: 165 ---YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
              Y   I ALC   Q++KA +L+ ++  KGV P   +F  L+   I+ N+ ++ ++L  
Sbjct: 725 KDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCY 784

Query: 222 SM 223
           S+
Sbjct: 785 SI 786



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 119/258 (46%), Gaps = 24/258 (9%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY T++ G  K+  +   K +   M  E  NPN   +NSL+H +C A D   A 
Sbjct: 138 CIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAY 197

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE------ATRLLDLMIQGGVRPDAFCEI 125
            L   M D G     V +N+ +  +C   ++        A ++ + M+         C +
Sbjct: 198 KLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASS------CVL 251

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N V        LC +GK   A ++ + +   G +P+  TY+  I  LC   +++KA  LF
Sbjct: 252 NKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLF 311

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM--DKRNVMPYASILSIIVDLLV 243
            +M+  GV P+   +T L+ SF +    + +IE  RS   + R++   A++++     L+
Sbjct: 312 QEMKSVGVNPDVYTYTILIDSFCK----AGLIEQARSWFDEMRSIGCSANVVTYTA--LL 365

Query: 244 KNEISLNSIPQ----FNR 257
              +    +PQ    FNR
Sbjct: 366 HAYLKAKQLPQASDIFNR 383



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 92/218 (42%), Gaps = 42/218 (19%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGL K G VD + +LF+QM  +   PN VTY  LI+  C A   +EA 
Sbjct: 580 CSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAH 639

Query: 72  YLFIEMMD--------------RGLQSDVVT-------------------FNVIMDELCK 98
            L  EM                +G     +                    + +++D   K
Sbjct: 640 SLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSK 699

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVA---YGCLIDGLCKIGKLKNARELSQSLTR 155
             +++EA  L   M++          +NI +   Y  LI  LC   +L+ A EL   +TR
Sbjct: 700 AGRLEEALELHKEMMELSS------SLNITSKDMYTSLIQALCLASQLEKAFELYSEITR 753

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            G++P +  +   I  L    + ++A  L   +  +GV
Sbjct: 754 KGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGV 791



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 70/198 (35%), Gaps = 26/198 (13%)

Query: 41  QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100
           ++KD    P+  TYN+L+     A   +    +  EM + G   D  T       LCK  
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 101 KMDEA------------TRLLDLMIQGGVRPDAF--------------CEINIVAYGCLI 134
           +  +A            T L   MI G +    F              C  N+V Y  L+
Sbjct: 90  RWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLL 149

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G  K  +L   + +   + + G  PN   +N  +H+ CN      A+ L   M   G  
Sbjct: 150 TGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCP 209

Query: 195 PNCVIFTTLMPSFIRKNE 212
           P  V +   + S     E
Sbjct: 210 PGYVAYNIFIGSICGGEE 227


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 126/236 (53%), Gaps = 6/236 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  CKP+  T+N++I+GLCK   +++A  L+  M  E +  N VTYN+L+H F   +   
Sbjct: 475 GKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQ 534

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  L  EM+ RG   D +T+N ++  LCK   +++   L + M+  G+ P       I+
Sbjct: 535 QAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFP------TII 588

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +   LI GLC+ GK+ +A +  Q +   GL P++VTYN  I+ LC    + +A +LF  +
Sbjct: 589 SCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKL 648

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + +G+ P+ + + TL+     +   +    LL        +P     SI+++ +VK
Sbjct: 649 QSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVK 704



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+N +IDGL K+G++  A EL  +M  +   PNV+TY  LI+GFC      EA  
Sbjct: 374 EPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAE 433

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M  +GL  + V +N ++  LCK+  ++EA +L   M   G +PD      I  +  
Sbjct: 434 IVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPD------IYTFNS 487

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GLCK  K++ A  L   +   G++ N VTYN  +HA    + + +A  L  +M  +G
Sbjct: 488 LINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRG 547

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              + + +  L+ +  +     K + L   M  + + P     +I++  L + 
Sbjct: 548 CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRT 600



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 119/273 (43%), Gaps = 61/273 (22%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+V Y T+I  LC+   V +A +L   M      P+V T+N +IHG C A   +EA 
Sbjct: 236 CVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAA 295

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL---------------------- 109
            L   M+ RG  +D +T+  +M  LC+  ++DEA  LL                      
Sbjct: 296 KLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASG 355

Query: 110 ------DL----MIQGGVRPDAFC-----------------------------EINIVAY 130
                 DL    M+  G  PDA+                              E N++ Y
Sbjct: 356 RFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITY 415

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI+G CK G+L+ A E+  S++  GL  N V YN  I ALC D  +++A  LF +M  
Sbjct: 416 TILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSG 475

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           KG  P+   F +L+    + ++  + + L   M
Sbjct: 476 KGCKPDIYTFNSLINGLCKNHKMEEALSLYHDM 508



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 29/249 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TY  +I+G CK+G +++A E+   M  + ++ N V YN LI   C   +  EA  
Sbjct: 409 EPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQ 468

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF- 122
           LF EM  +G + D+ TFN +++ LCKN KM+EA  L   M   GV  +         AF 
Sbjct: 469 LFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFL 528

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              C ++ + Y  LI  LCK G ++    L + +   G+ P ++
Sbjct: 529 MRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTII 588

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           + NI I  LC   +++ A     DM  +G+ P+ V + +L+    +     +   L   +
Sbjct: 589 SCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKL 648

Query: 224 DKRNVMPYA 232
               + P A
Sbjct: 649 QSEGIRPDA 657



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 11/234 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P   T+  ++  LC    VD A  L   M      PN V Y +LIH  C  N  +EA  
Sbjct: 202 SPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQ 261

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M     + DV TFN ++  LC+  ++ EA +LLD M+  G   DA      + YG 
Sbjct: 262 LLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDA------LTYGY 315

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL-DMEVK 191
           L+ GLC++G++  AR L   +      PN V YN  I       + ++A DL   +M + 
Sbjct: 316 LMHGLCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIA 371

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  P+   F  ++   ++K      +ELL  M  +   P     +I+++   K 
Sbjct: 372 GYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQ 425



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 12/252 (4%)

Query: 8   FGVV-CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +GV  C P   +YN ++D L        A  +F  M    ++P V T+  ++   C  ++
Sbjct: 161 WGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSE 220

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A  L  +M   G   + V +  ++  LC+N ++ EA +LL+ M          CE +
Sbjct: 221 VDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFL------MCCEPD 274

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  +  +I GLC+ G++  A +L   +   G   + +TY   +H LC   Q+D+A  L  
Sbjct: 275 VQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALL- 333

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL-RSMDKRNVMPYASILSIIVDLLVKN 245
               K   PN V++ TL+  ++      +  +LL  +M      P A   +I++D LVK 
Sbjct: 334 ---NKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKK 390

Query: 246 EISLNSIPQFNR 257
              ++++   N 
Sbjct: 391 GYLVSALELLNE 402



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 5/153 (3%)

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           E L  +M D GL      F +IM    K     +ATRLL L + G    D   +   V  
Sbjct: 119 EKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLL-LDMWGVYSCDPTFKSYNVVL 177

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L+DG C     + A  +   +   G+ P V T+ + + ALC   ++D A  L  DM  
Sbjct: 178 DILVDGDCP----RVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAK 233

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            G  PN VI+ TL+ +    N  S+ ++LL  M
Sbjct: 234 HGCVPNSVIYQTLIHALCENNRVSEALQLLEDM 266


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 126/234 (53%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  TY  +IDGLC++G +++A  +  +M  + I P+V+TYN+LI+G+C       A 
Sbjct: 332 CKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAF 391

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M  R  + +V TFN +M+ LC+  K  +A  LL  M+  G+ PD      IV+Y 
Sbjct: 392 ELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPD------IVSYN 445

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLC+ G +  A +L  S+    L P+ +T+   I+A C   + D A      M  K
Sbjct: 446 VLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRK 505

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G++ + V  TTL+       +T   + +L ++ K  ++     L++I+D+L K 
Sbjct: 506 GISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKG 559



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 126/246 (51%), Gaps = 29/246 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+V+Y+ +I GLC+ G +++A  L  QM ++   P+  TY  LI   C     ++A 
Sbjct: 262 CAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAF 321

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----------- 120
            LF EM+ RG + +V T+ V++D LC++ K++EA  +   M++ G+ P            
Sbjct: 322 NLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGY 381

Query: 121 --------AF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                   AF          C+ N+  +  L++GLC++GK   A  L + +   GL P++
Sbjct: 382 CKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDI 441

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V+YN+ I  LC +  M+ A+ L   M    + P+C+ FT ++ +F ++ +       L  
Sbjct: 442 VSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGL 501

Query: 223 MDKRNV 228
           M ++ +
Sbjct: 502 MLRKGI 507



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 16/246 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  T+N +++GLC+ G   KA  L  +M D  ++P++V+YN LI G C     N A 
Sbjct: 402 CKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAY 461

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M    L+ D +TF  I++  CK  K D A+  L LM++ G+  D       V   
Sbjct: 462 KLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDE------VTGT 515

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG+C +GK ++A  + ++L +  ++    + N+ +  L    ++ +   +   +   
Sbjct: 516 TLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKL 575

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ P+ V +TTL+   IR  + S    +L  M     +P     +II+          N 
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIII----------NG 625

Query: 252 IPQFNR 257
           + QF R
Sbjct: 626 LCQFGR 631



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 119/265 (44%), Gaps = 44/265 (16%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELF------------------------------------- 39
           + Y TI++ LCK G+ + A E+F                                     
Sbjct: 196 IDYRTIVNALCKNGYTEAA-EMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFD 254

Query: 40  LQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99
           L  ++    PN V+Y+ LIHG C      EA  L  +M ++G Q    T+ V++  LC  
Sbjct: 255 LMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDR 314

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             +D+A  L D MI  G +P      N+  Y  LIDGLC+ GK++ A  + + + + G+ 
Sbjct: 315 GLIDKAFNLFDEMIARGCKP------NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIF 368

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+V+TYN  I+  C D ++  A +L   ME +   PN   F  LM    R  +  K + L
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHL 428

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
           L+ M    + P     ++++D L +
Sbjct: 429 LKRMLDNGLSPDIVSYNVLIDGLCR 453



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 125/261 (47%), Gaps = 45/261 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YN +IDGLC+EG ++ A +L   M   ++ P+ +T+ ++I+ FC     + A   
Sbjct: 439 PDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAF 498

Query: 74  FIEMMDRGLQSDVVT-----------------------------------FNVIMDELCK 98
              M+ +G+  D VT                                    NVI+D L K
Sbjct: 499 LGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSK 558

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             K+ E   +L  + + G+ P      ++V Y  L+DGL + G +  +  + + +  +G 
Sbjct: 559 GCKLKEELAMLGKINKLGLVP------SVVTYTTLVDGLIRSGDISGSFRMLELMKLSGC 612

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +PNV  Y I I+ LC   ++++A  L   M+  GV+PN V +T ++  ++   +  + +E
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALE 672

Query: 219 LLRSMDKR----NVMPYASIL 235
            +R+M +R    N   Y+S+L
Sbjct: 673 TVRAMVERGYELNDRIYSSLL 693



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 5/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   Y++++  L K      A   + +M+ +     ++ Y ++++  C       AE   
Sbjct: 159 NYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFM 218

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +++  G   D      ++   C+   + +A ++ DLM + G      C  N V+Y  LI
Sbjct: 219 CKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGT-----CAPNSVSYSILI 273

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLC++G+L+ A  L   +   G  P+  TY + I ALC+   +DKA +LF +M  +G  
Sbjct: 274 HGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCK 333

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           PN   +T L+    R  +  +   + R M K  + P
Sbjct: 334 PNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFP 369



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 45/233 (19%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T+  II+  CK+G  D A      M  + I+ + VT  +LI G C  N G   + 
Sbjct: 473 EPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVC--NVGKTRDA 530

Query: 73  LFI--------------------EMMDRG-----------------LQSDVVTFNVIMDE 95
           LFI                    +M+ +G                 L   VVT+  ++D 
Sbjct: 531 LFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDG 590

Query: 96  LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155
           L ++  +  + R+L+LM   G  P      N+  Y  +I+GLC+ G+++ A +L  ++  
Sbjct: 591 LIRSGDISGSFRMLELMKLSGCLP------NVYPYTIIINGLCQFGRVEEAEKLLSAMQD 644

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           +G+ PN VTY + +    N+ ++D+A +    M  +G   N  I+++L+  F+
Sbjct: 645 SGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFV 697



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 25/239 (10%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NE 69
           C PN   Y  II+GLC+ G V++A++L   M+D  ++PN VTY  ++ G  Y N+G  + 
Sbjct: 612 CLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKG--YVNNGKLDR 669

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT------RLLDLMIQGGVRPDAFC 123
           A      M++RG + +   ++ ++     ++K    T       L+ ++ Q G      C
Sbjct: 670 ALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLC 729

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
                    L+  LCK G+   +  L Q++ ++G+       +I + + C+ ++  K  +
Sbjct: 730 IF-------LVTRLCKEGRTDESNGLVQTILKSGVFLEKAI-DIIMESYCSKKKHTKCVE 781

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK----VIELLRS---MDKRNVMPYASIL 235
           L   +   G  P+   F  ++    ++ +T +    V+ELL S   ++K  V+PY   L
Sbjct: 782 LITLVLKSGFVPSFKSFCLVIQGLKKEGDTERARELVMELLTSNGVVEKSGVLPYVECL 840



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 7/197 (3%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           N   Y+SL+      + G  A   +  M   G    ++ +  I++ LCKN   + A   +
Sbjct: 159 NYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFM 218

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL-MPNVVTYNIT 168
             +++ G   D+    +IV    L+ G C+   L++A ++   ++R G   PN V+Y+I 
Sbjct: 219 CKILKVGFLLDS----HIVT--SLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSIL 272

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           IH LC   ++++A  L   M  KG  P+   +T L+ +   +    K   L   M  R  
Sbjct: 273 IHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGC 332

Query: 229 MPYASILSIIVDLLVKN 245
            P     ++++D L ++
Sbjct: 333 KPNVHTYTVLIDGLCRD 349


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 124/247 (50%), Gaps = 9/247 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KPN  T+  +IDGLCK+G+ +KA  LFL++ + ++  PNV TY S+IHG+C  +  N AE
Sbjct: 333 KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAE 392

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M ++GL  +  T+  ++D   K    ++A  L+DLM + G         NI  Y 
Sbjct: 393 MLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGF------SANIFTYN 446

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             ID LCK G+   A +L +   R GL  + VTY I I  LC      +A   F  M   
Sbjct: 447 AFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKA 506

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA-SILSIIVDLLVKNEISLN 250
           GV P+   + TL+ +F R+    +  +L        ++P   +  S+I        +SL 
Sbjct: 507 GVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSL- 565

Query: 251 SIPQFNR 257
           ++  FNR
Sbjct: 566 ALKFFNR 572



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 20/248 (8%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN + + ++I+GLCK G + +A E+  +M  +   PNV T+ +LI G C      +A  
Sbjct: 298 KPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFR 357

Query: 73  LFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           LF++++     + +V T+  ++   CK  K++ A  LL  M + G+ P      N   Y 
Sbjct: 358 LFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVP------NTKTYT 411

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           CLIDG  K G  + A EL   + + G   N+ TYN  I +LC   +  +A  L       
Sbjct: 412 CLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRL 471

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+  + V +T L+    R+ +T + +     M K  V P         D+   N +    
Sbjct: 472 GLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQP---------DMHTYNTL---- 518

Query: 252 IPQFNRQK 259
           I  F+RQ+
Sbjct: 519 IAAFSRQR 526



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 114/250 (45%), Gaps = 31/250 (12%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+V  PNT TY  +IDG  K G  +KA EL   M  E  + N+ TYN+ I   C   
Sbjct: 399 KEQGLV--PNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKG 456

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA  L  +    GLQ+D VT+ +++ ELC+     EA      M + GV+PD     
Sbjct: 457 RFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYN 516

Query: 126 NIVA-----------------------------YGCLIDGLCKIGKLKNARELSQSLTRA 156
            ++A                             Y  +I G C+   +  A +    ++  
Sbjct: 517 TLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDH 576

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P+ +TY   I  LC + ++D+A  L+  M  KG++P  V   TL   + ++++++  
Sbjct: 577 GCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSATA 636

Query: 217 IELLRSMDKR 226
           + +L  +DK+
Sbjct: 637 MVILERLDKK 646



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 8/236 (3%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P++V+Y  +    C+ G +         M       +  T   +I  FC     +  
Sbjct: 227 VC-PDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRV 285

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            + F + ++ GL+ +++ F  +++ LCK   + +A  +L+ M++ G +P      N+  +
Sbjct: 286 FWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKP------NVYTH 339

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
             LIDGLCK G  + A  L   L R+    PNV TY   IH  C ++++++A  L   M+
Sbjct: 340 TALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMK 399

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +G+ PN   +T L+    +     K  EL+  M K          +  +D L K 
Sbjct: 400 EQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKK 455



 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 106/220 (48%), Gaps = 8/220 (3%)

Query: 23  IDGLCKE-GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           + G+  E G V  A+ +F +M+   + P+ V+Y  +   +C     ++ +    +M+ RG
Sbjct: 202 VTGVAGEMGLVGYAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRG 261

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
              D  T  +++   C+           D  ++ G++P      N++ +  LI+GLCK G
Sbjct: 262 FVVDNATCTLMISTFCEKGFASRVFWYFDKWVELGLKP------NLINFTSLINGLCKRG 315

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKGVAPNCVIF 200
            +K A E+ + + + G  PNV T+   I  LC     +KA  LFL +       PN   +
Sbjct: 316 SIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTY 375

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           T+++  + ++++ ++   LL  M ++ ++P     + ++D
Sbjct: 376 TSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLID 415



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           ++ F    +P+  TYNT+I    ++  ++++++LF +     + P   TY S+I G+C  
Sbjct: 501 SKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRD 560

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            + + A   F  M D G   D +T+  ++  LCK  K+DEA +L + M+  G+ P   CE
Sbjct: 561 RNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSP---CE 617

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +  +    L    CK      A  + + L +   +  V   N  I  LC++ ++  A   
Sbjct: 618 VTRLT---LAYEYCKQDDSATAMVILERLDKKLWIRTV---NTLIRKLCSERKVGMAVLF 671

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           F  +  K    + V  T    +    N+ + V +L   + K
Sbjct: 672 FHKLLDKDQNVDRVTLTAFTTACYESNKYALVSDLSERISK 712


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN       I  LCK G  ++A E++  +  + +  N+ T N+LIHG C  N+  EA  
Sbjct: 424 KPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATK 483

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+D G++ D +T+N+++   CK  KM+EA +L D MI+ G +PD F       +  
Sbjct: 484 VLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLF------TFNT 537

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +   C +GK+++   L   +   GL P++VTY   I   C  + + KA+   +++   G
Sbjct: 538 FLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNG 597

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN VI+  L+  + R    S  I +L +M    + P
Sbjct: 598 LRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQP 635



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T+NT +   C  G V+    L  QMK E + P++VTY ++I G+C A D ++A  
Sbjct: 529 KPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANK 588

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             IE++  GL+ + V +N ++    +N  + +A  +LD M   G++P        + Y  
Sbjct: 589 YLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTP------ITYNS 642

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  +C  G ++ A+E+        +   V+ Y I I   C   ++D+A   F +M  + 
Sbjct: 643 LMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRD 702

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN + +TTLM ++ +     +  +L   M    ++P
Sbjct: 703 IRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVP 740



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 7/242 (2%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           G    G    P+  TY  +I  LC+ G +D A  +  +++   I P VVTYN L+   C 
Sbjct: 204 GEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCR 263

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           +    EA  L   M++  L+  +VTF ++++ L + ++  E   +L  M   G+ P    
Sbjct: 264 SGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITP---- 319

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N V Y  LI   C+ G    A  L   +   G+   VVTYN+   ALC + +M+ A  
Sbjct: 320 --NEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQ 377

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIR-KNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +  +M + G+  +C +F +++   +R       V+ L+R M  R + P  ++++  +  L
Sbjct: 378 ILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQEL 437

Query: 243 VK 244
            K
Sbjct: 438 CK 439



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 112/269 (41%), Gaps = 44/269 (16%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG+   PN V YN +I   C+EG   +A  LF +M  + I   VVTYN +    C   + 
Sbjct: 315 FGIT--PNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEM 372

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVI----------------------------------- 92
             AE +  EM+  G+      FN +                                   
Sbjct: 373 EHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTA 432

Query: 93  -MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
            + ELCK  K +EA  +  L++  G+       +NI     LI GLC+   +K A ++ +
Sbjct: 433 CIQELCKRGKHEEAAEIWFLVLGKGL------GVNIATSNALIHGLCQGNNMKEATKVLK 486

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
           ++  +G+  + +TYNI I   C   +M++A  L  DM  +G  P+   F T + ++    
Sbjct: 487 AMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLG 546

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +   ++ LL  M    + P       I+D
Sbjct: 547 KVEDILHLLDQMKSEGLKPDIVTYGTIID 575



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 109/248 (43%), Gaps = 30/248 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+  +I+GL +     +   +  +M+   I PN V YN LI   C     +EA  
Sbjct: 283 RPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALR 342

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV--------------- 117
           LF EM+ +G++  VVT+N+I   LCK  +M+ A ++LD M+  G+               
Sbjct: 343 LFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHL 402

Query: 118 ----RPDA-----------FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
               R D            F + N       I  LCK GK + A E+   +   GL  N+
Sbjct: 403 RGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNI 462

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            T N  IH LC    M +A  +   M   GV  + + +  ++    + ++  + I+L   
Sbjct: 463 ATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDD 522

Query: 223 MDKRNVMP 230
           M KR   P
Sbjct: 523 MIKRGFKP 530



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 7/216 (3%)

Query: 30  GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD-RGLQSDVVT 88
           G +  A + FL++     +P++ T N L+         + A  +F EM D   +  DV T
Sbjct: 159 GSLSCAADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYT 218

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           + V++  LC+  ++D A  +L  + + G++P       +V Y  L+D LC+ G+++ A +
Sbjct: 219 YTVMIKALCRAGEIDAAFVMLAELERSGIQP------TVVTYNVLMDALCRSGRVEEAFQ 272

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           L   +    L P++VT+ I I+ L   ++  +   +  +ME  G+ PN VI+  L+    
Sbjct: 273 LKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHC 332

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           R+   S+ + L   M  + +       ++I   L K
Sbjct: 333 REGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCK 368



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 42/263 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKE----------------------------------- 37
           K   VTYN I   LCKEG ++ A++                                   
Sbjct: 353 KQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVL 412

Query: 38  -LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
            L  +M    + PN     + I   C      EA  ++  ++ +GL  ++ T N ++  L
Sbjct: 413 RLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGL 472

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C+   M EAT++L  M+  GV      E + + Y  +I   CK  K++ A +L   + + 
Sbjct: 473 CQGNNMKEATKVLKAMVDSGV------EFDRITYNIMIQFCCKASKMEEAIQLRDDMIKR 526

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P++ T+N  + A CN  +++    L   M+ +G+ P+ V + T++  + +  +  K 
Sbjct: 527 GFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKA 586

Query: 217 IELLRSMDKRNVMPYASILSIIV 239
            + L  + K  + P A I + ++
Sbjct: 587 NKYLIELIKNGLRPNAVIYNALI 609



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 6/131 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  +TYN+++  +C  G V++AKE+F Q   +NI   V+ Y  +I GFC     +EA  
Sbjct: 634 QPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVM 693

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM  R ++ + +T+  +M   CK    +EA +L D M+  G+ PD       V+Y  
Sbjct: 694 YFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDT------VSYNT 747

Query: 133 LIDGLCKIGKL 143
           LI G C++  L
Sbjct: 748 LISGCCEVDSL 758



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N E GV+       Y  II G CK G +D+A   F +M   +I PN +TY +L++ +C  
Sbjct: 667 NIELGVI------GYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKC 720

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
            +  EA  LF EM+  G+  D V++N ++   C+   +D+
Sbjct: 721 GNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLDK 760



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-GLMPNVV 163
           A   L+L  +G       C I + A GC        G+L  AR++   +     + P+V 
Sbjct: 165 ADAFLELSTRGASPSIKTCNILVEALGC-------GGQLDLARKVFGEMRDGNAVAPDVY 217

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY + I ALC   ++D A  +  ++E  G+ P  V +  LM +  R     +  +L   M
Sbjct: 218 TYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRM 277

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
            +  + P      I+++ L + +
Sbjct: 278 VEGRLRPSIVTFGILINGLARGQ 300



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKGVAPNCVI 199
           G L  A +    L+  G  P++ T NI + AL    Q+D A  +F +M +   VAP+   
Sbjct: 159 GSLSCAADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYT 218

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +T ++ +  R  E      +L  +++  + P     ++++D L ++
Sbjct: 219 YTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRS 264


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 125/266 (46%), Gaps = 35/266 (13%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV  K   VT+N +I GLCK+G ++ A     +M D+ + P+V+TYN+LIH  C A 
Sbjct: 372 REKGV--KATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAG 429

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---- 121
           +  +A  L  EM+ RGL+ D  T N ++  LCK ++ +EA  LL    Q G  PD     
Sbjct: 430 NIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYG 489

Query: 122 ------FCEIN-------------------IVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                 F E N                   I  Y  LI GL ++G+LK A +    L   
Sbjct: 490 TVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEK 549

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL+P+  TYNI IHA C +  ++ A      M      P+ V   TLM       +  K 
Sbjct: 550 GLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKA 609

Query: 217 IELLRSM----DKRNVMPYASILSII 238
           ++L  S      K +V+ Y +++  +
Sbjct: 610 LKLFESWVEKGKKVDVITYNTLIQTM 635



 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 6/210 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y T++    KE   + A  L+ +M ++ + P++ TYN+LI G        EA   
Sbjct: 483 PDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDK 542

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+M++GL  D  T+N+I+   CK   ++ A +  + M++   +PD      +V    L
Sbjct: 543 LNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPD------VVTCNTL 596

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLC  GKL  A +L +S    G   +V+TYN  I  +C D  +D A   F DME +G+
Sbjct: 597 MNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGL 656

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+   +  ++ +      T +   +L  +
Sbjct: 657 QPDAFTYNVVLSALSEAGRTEEAQNMLHKL 686



 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 36/263 (13%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG+   P+ VTYNT+++  C++G + +A+ L  +MK + + P   TYN+L+  +      
Sbjct: 233 FGL--SPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWI 290

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAF---- 122
            +A  +   M   G + D+ T+NV+   LC+  K+DEA RL D M + G + PD      
Sbjct: 291 KQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNT 350

Query: 123 -------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
                                     +  +V +  +I GLCK G+L+ A      +   G
Sbjct: 351 LADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDG 410

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L P+V+TYN  IHA C    + KA+ L  +M  +G+  +     T++ +  ++    +  
Sbjct: 411 LAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQ 470

Query: 218 ELLRSMDKRNVMP----YASILS 236
            LL+S  +R  MP    Y ++++
Sbjct: 471 GLLQSPPQRGFMPDEVSYGTVMA 493



 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 15/232 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-----NINPNVVTYNSLIHGFCYANDG 67
           +P+  TYN +  GLC+ G VD+A     ++KDE      + P+VVTYN+L          
Sbjct: 306 EPDLWTYNVLAAGLCQAGKVDEA----FRLKDEMERLGTLLPDVVTYNTLADACFKCRCS 361

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           ++A  L  EM ++G+++ +VT N+++  LCK+ +++ A   L+ M   G+ PD      +
Sbjct: 362 SDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPD------V 415

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           + Y  LI   CK G +  A  L   + R GL  +  T N  ++ LC +++ ++A  L   
Sbjct: 416 ITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQS 475

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              +G  P+ V + T+M ++ ++  +   + L   M ++ + P  S  + ++
Sbjct: 476 PPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLI 527



 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 6/202 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYNT+I GL + G + +A +   ++ ++ + P+  TYN +IH +C   D   A   
Sbjct: 518 PSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQF 577

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++   + DVVT N +M+ LC N K+D+A +L +  ++ G +      ++++ Y  L
Sbjct: 578 HNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKK------VDVITYNTL 631

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  +CK G +  A      +   GL P+  TYN+ + AL    + ++A ++   +   G 
Sbjct: 632 IQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGT 691

Query: 194 APNCVIFTTLMPSFIRKNETSK 215
                    L PS + + E+ K
Sbjct: 692 LSQSFSSPLLKPSSVDEAESGK 713



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 7/245 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+ D   K      A  L  +M+++ +   +VT+N +I G C   +   A   
Sbjct: 343 PDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGC 402

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M D GL  DV+T+N ++   CK   + +A  L+D M++ G++ D F  +N V Y   
Sbjct: 403 LNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFT-LNTVLYN-- 459

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
              LCK  + + A+ L QS  + G MP+ V+Y   + A   +   + A  L+ +M  K +
Sbjct: 460 ---LCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKL 516

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P+   + TL+    R     + I+ L  + ++ ++P  +  +II+    K E  L +  
Sbjct: 517 TPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCK-EGDLENAF 575

Query: 254 QFNRQ 258
           QF+ +
Sbjct: 576 QFHNK 580



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 42/251 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N ++   C +G +  A      M+   ++P+ VTYN+L++  C      EA  L
Sbjct: 202 PNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARAL 261

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G+     T+N ++    +   + +AT++++ M   G  PD +       Y  L
Sbjct: 262 LARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLW------TYNVL 315

Query: 134 IDGLCKIGKLKNARELSQSLTRAG-LMPNVVTY--------------------------- 165
             GLC+ GK+  A  L   + R G L+P+VVTY                           
Sbjct: 316 AAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKG 375

Query: 166 --------NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
                   NI I  LC D +++ A      M   G+AP+ + + TL+ +  +    +K  
Sbjct: 376 VKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAY 435

Query: 218 ELLRSMDKRNV 228
            L+  M +R +
Sbjct: 436 TLMDEMVRRGL 446



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 16/205 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT NT+++GLC  G +DKA +LF    ++    +V+TYN+LI   C   D + A +
Sbjct: 587 KPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALH 646

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M  RGLQ D  T+NV++  L +  + +EA  +L  + + G    +F          
Sbjct: 647 FFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSS-------- 698

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPN-----VVTYNITIHALCNDEQMDKAHDLFLD 187
               L K   +  A     + T    + N        Y   ++ LC   Q  +A  +  +
Sbjct: 699 ---PLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDE 755

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNE 212
           M  KG++ +   + TLM   +++ +
Sbjct: 756 MMQKGMSVDSSTYITLMEGLVKRQK 780



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 9/239 (3%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKEL--FLQMKDENINPNVVTYNSLIHGFCYANDG 67
           V  +P+    N ++  L +         L  F  +    ++PN  T+N L+H  C     
Sbjct: 161 VRVRPSLQAANAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTL 220

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            +A      M   GL  D VT+N +++  C+   + EA  LL  M + GV P        
Sbjct: 221 ADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTR------ 274

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  L+    ++G +K A ++ +++T  G  P++ TYN+    LC   ++D+A  L  +
Sbjct: 275 PTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDE 334

Query: 188 MEVKG-VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           ME  G + P+ V + TL  +  +   +S  + LL  M ++ V       +I++  L K+
Sbjct: 335 MERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKD 393


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXML 185

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVTFTTLIDGHC 239

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AH L  +M VKG+ P+ +
Sbjct: 240 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 299

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 300 TYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALIS 341



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A +L
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 285

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  +++  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 286 IDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDE------VAYTAL 339

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G+  +A ++ + +   GL P+  TY + I+  C    +     L  +M+  G 
Sbjct: 340 ISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGH 399

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 400 VPSVVTYNVLM 410



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 155 RPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANE 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 215 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  GL P+ +TY   I+  C +  +D A +    M  + 
Sbjct: 269 LIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQEN 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V +T L+    ++  +    ++LR M    + P A   ++I++   K
Sbjct: 329 IRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 380



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 250 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDK------ITYTT 303

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CK G L +A E  + + +  +  + V Y   I   C + +   A  +  +M   G
Sbjct: 304 LINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVG 363

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +  +     +LL+ M +   +P
Sbjct: 364 LKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVP 401



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 163

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  + G L     L   +  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 164 LMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 223

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 224 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 261



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 49/112 (43%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 153

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L   M    V P     S++++ L K
Sbjct: 154 LRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCK 205



 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK G V    +L  +M+ +   P+VVTYN L++G
Sbjct: 365 KPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  130 bits (326), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 132/246 (53%), Gaps = 10/246 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+ YN +I G C  G++D+A+ L L++   +  PN  TY+ LI G C     N+A++
Sbjct: 370 RPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQH 429

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI------- 125
           +F EM   G    VVTFN +++ LCK  +++EA RLL   ++   +P  F  +       
Sbjct: 430 IFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA-RLLFYQMEIVRKPSLFLRLSQGTDKV 488

Query: 126 -NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            +I +   +++ LC+ G +  A +L   L  +G++P++ TYNI I+  C    ++ A  L
Sbjct: 489 FDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKL 548

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +M++KG  P+ V + TL+    R       +E+   M K+  +P +S    I+    +
Sbjct: 549 FKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCR 608

Query: 245 -NEISL 249
            N ISL
Sbjct: 609 ENNISL 614



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 19/216 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY+ +I G+CK G ++KA+ +F +M+     P+VVT+NSLI+G C AN   EA 
Sbjct: 404 CFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEAR 463

Query: 72  YLFIEM-----------MDRGLQS--DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
            LF +M           + +G     D+ +  V+M+ LC++  + +A +LL  ++  GV 
Sbjct: 464 LLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVL 523

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           PD      I  Y  LI+G CK G +  A +L + +   G MP+ VTY   I  L    + 
Sbjct: 524 PD------IRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRN 577

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           + A ++F  M  KG  P    + T+M    R+N  S
Sbjct: 578 EDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNIS 613



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 116/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+   +N I+  L ++     A  ++ QM   N+NP+VVTY  LIHG C      +A 
Sbjct: 159 CKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDAL 218

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM DRG+  + + +++++  LC+ +K+ +A RL   M   G      C  +++ Y 
Sbjct: 219 VLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASG------CNRDLITYN 272

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++G CK G L +A  L Q LT+ G +  V+ Y   I+ L    + ++AH  +  M  +
Sbjct: 273 VLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRE 332

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + P+ +++T ++    ++   ++ + LL  M +R + P
Sbjct: 333 NIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRP 371



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  +I GLCK      A  LF +M D  I PN + Y+ ++ G C A    +A+ L
Sbjct: 196 PDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRL 255

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M   G   D++T+NV+++  CK+  +D+A  LL L+ + G        + ++ YGCL
Sbjct: 256 FSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHI------LGVIGYGCL 309

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GL +  + + A    Q + R  + P+V+ Y I I  L  + ++ +A  L  +M  +G+
Sbjct: 310 INGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGL 369

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+ + +  L+  F       +   L   + K +  P     SI++  + KN
Sbjct: 370 RPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKN 421



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 8/214 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELF-LQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           C  + +TYN +++G CK G++D A  L  L  KD +I   V+ Y  LI+G   A    EA
Sbjct: 264 CNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHI-LGVIGYGCLINGLFRARRYEEA 322

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              + +M+   ++ DV+ + +++  L +  ++ EA  LL  M + G+RPD  C      Y
Sbjct: 323 HMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTIC------Y 376

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI G C +G L  A  L   +++    PN  TY+I I  +C +  ++KA  +F +ME 
Sbjct: 377 NALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEK 436

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
            G  P+ V F +L+    + N   +   L   M+
Sbjct: 437 LGCLPSVVTFNSLINGLCKANRLEEARLLFYQME 470



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 6/206 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           + II  L KE   +   ++  ++K+  I  +   ++ LI  +  A    +A   F  M D
Sbjct: 97  DLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRD 156

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
              + D+  FN+I+  L +      A  + + M++  + PD      +V YG LI GLCK
Sbjct: 157 FDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPD------VVTYGILIHGLCK 210

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
             K ++A  L   +T  G++PN + Y+I +  LC  +++  A  LF  M   G   + + 
Sbjct: 211 TCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLIT 270

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDK 225
           +  L+  F +         LL+ + K
Sbjct: 271 YNVLLNGFCKSGYLDDAFTLLQLLTK 296


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 132/246 (53%), Gaps = 10/246 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T+ YN +I G C  G++D+A+ L L++   +  PN  TY+ LI G C     N+A++
Sbjct: 370 RPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQH 429

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI------- 125
           +F EM   G    VVTFN +++ LCK  +++EA RLL   ++   +P  F  +       
Sbjct: 430 IFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA-RLLFYQMEIVRKPSLFLRLSQGTDKV 488

Query: 126 -NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            +I +   +++ LC+ G +  A +L   L  +G++P++ TYNI I+  C    ++ A  L
Sbjct: 489 FDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKL 548

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F +M++KG  P+ V + TL+    R       +E+   M K+  +P +S    I+    +
Sbjct: 549 FKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCR 608

Query: 245 -NEISL 249
            N ISL
Sbjct: 609 ENNISL 614



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 19/216 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY+ +I G+CK G ++KA+ +F +M+     P+VVT+NSLI+G C AN   EA 
Sbjct: 404 CFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEAR 463

Query: 72  YLFIEM-----------MDRGLQS--DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
            LF +M           + +G     D+ +  V+M+ LC++  + +A +LL  ++  GV 
Sbjct: 464 LLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVL 523

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           PD      I  Y  LI+G CK G +  A +L + +   G MP+ VTY   I  L    + 
Sbjct: 524 PD------IRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRN 577

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           + A ++F  M  KG  P    + T+M    R+N  S
Sbjct: 578 EDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNIS 613



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 116/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+   +N I+  L ++     A  ++ QM   N+NP+VVTY  LIHG C      +A 
Sbjct: 159 CKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDAL 218

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM DRG+  + + +++++  LC+ +K+ +A RL   M   G      C  +++ Y 
Sbjct: 219 VLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASG------CNRDLITYN 272

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++G CK G L +A  L Q LT+ G +  V+ Y   I+ L    + ++AH  +  M  +
Sbjct: 273 VLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRE 332

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + P+ +++T ++    ++   ++ + LL  M +R + P
Sbjct: 333 NIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRP 371



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  +I GLCK      A  LF +M D  I PN + Y+ ++ G C A    +A+ L
Sbjct: 196 PDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRL 255

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M   G   D++T+NV+++  CK+  +D+A  LL L+ + G        + ++ YGCL
Sbjct: 256 FSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHI------LGVIGYGCL 309

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GL +  + + A    Q + R  + P+V+ Y I I  L  + ++ +A  L  +M  +G+
Sbjct: 310 INGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGL 369

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+ + +  L+  F       +   L   + K +  P     SI++  + KN
Sbjct: 370 RPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKN 421



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 8/214 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELF-LQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           C  + +TYN +++G CK G++D A  L  L  KD +I   V+ Y  LI+G   A    EA
Sbjct: 264 CNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHI-LGVIGYGCLINGLFRARRYEEA 322

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              + +M+   ++ DV+ + +++  L +  ++ EA  LL  M + G+RPD  C      Y
Sbjct: 323 HMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTIC------Y 376

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI G C +G L  A  L   +++    PN  TY+I I  +C +  ++KA  +F +ME 
Sbjct: 377 NALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEK 436

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
            G  P+ V F +L+    + N   +   L   M+
Sbjct: 437 LGCLPSVVTFNSLINGLCKANRLEEARLLFYQME 470



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 6/204 (2%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           II  L KE   +   ++  ++K+  I  +   ++ LI  +  A    +A   F  M D  
Sbjct: 99  IIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFD 158

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
            + D+  FN+I+  L +      A  + + M++  + PD      +V YG LI GLCK  
Sbjct: 159 CKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPD------VVTYGILIHGLCKTC 212

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           K ++A  L   +T  G++PN + Y+I +  LC  +++  A  LF  M   G   + + + 
Sbjct: 213 KTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYN 272

Query: 202 TLMPSFIRKNETSKVIELLRSMDK 225
            L+  F +         LL+ + K
Sbjct: 273 VLLNGFCKSGYLDDAFTLLQLLTK 296


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 6/240 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N  +G  C PN V YNT++DG  K G V++A  LF ++K +   P   TY  +I+G C  
Sbjct: 229 NDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKK 288

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            +    + L +EM +RG+  +V  +N I+D   K+    E  + L  + + G  PD    
Sbjct: 289 CNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPD---- 344

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             I  Y  LI G C+ GK+  A EL +   + GL PN ++Y   IH  C   +  +A DL
Sbjct: 345 --ITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDL 402

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F+ M  KG   + V +  L+   +   E    + +   M +R V+P A++ +++++ L K
Sbjct: 403 FIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCK 462



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 8/239 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV+  P+   YN +++GLCK+G +  AK L ++M  +N++ +     +L+ GF     
Sbjct: 443 ERGVL--PDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGK 500

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            +EA+ LF   + +G+   VV +N ++   CK   M++A   +  M  G   PD F    
Sbjct: 501 LDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEF---- 556

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y  +IDG  K   L NA +L   + +    PNVVTY   I+  C      +A   F 
Sbjct: 557 --TYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFE 614

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +M   G+ PN V +T L+  F ++ + SK       M     +P     + +++ L  N
Sbjct: 615 EMRSSGLKPNVVTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNN 673



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 120/257 (46%), Gaps = 33/257 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TYNT+I G C++G V +A+EL        ++PN ++Y  LIH +C       A 
Sbjct: 341 CEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAF 400

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------F 122
            LFI M ++G   D+V +  ++  L    ++D A  + D M++ GV PDA          
Sbjct: 401 DLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGL 460

Query: 123 CE--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C+                    ++      L+DG  + GKL  A++L +     G+ P V
Sbjct: 461 CKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGV 520

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V YN  I   C    M+ A      M+    +P+   ++T++  ++++N+    ++L   
Sbjct: 521 VGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQ 580

Query: 223 MDKR----NVMPYASIL 235
           M K+    NV+ Y S++
Sbjct: 581 MVKQKCKPNVVTYTSLI 597



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 99/205 (48%), Gaps = 20/205 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+TIIDG  K+  +  A +LF QM  +   PNVVTY SLI+GFC   D + AE  
Sbjct: 553 PDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKT 612

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   GL+ +VVT+ +++   CK  K+ +A    +LM+     P      N V +  L
Sbjct: 613 FEEMRSSGLKPNVVTYTILIGCFCKEGKISKACSFFELMLLNRCIP------NDVTFNYL 666

Query: 134 IDGLCK------IGKLKNARELSQSL--------TRAGLMPNVVTYNITIHALCNDEQMD 179
           I+GL          K   + E+  SL           G    V  YN  +  LC+ + ++
Sbjct: 667 INGLTNNLATAVSNKANESLEIKASLMMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVN 726

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLM 204
            A  L   M  KG+ P+ V F  L+
Sbjct: 727 AALQLRDKMTGKGIFPDPVSFAALV 751



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 10/171 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN VTY ++I+G C+ G   +A++ F +M+   + PNVVTY  LI  FC     ++A 
Sbjct: 586 CKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGKISKAC 645

Query: 72  YLF-IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD-LMIQGGVRPDAF------- 122
             F + +++R + +D VTFN +++ L  N     + +  + L I+  +  D F       
Sbjct: 646 SFFELMLLNRCIPND-VTFNYLINGLTNNLATAVSNKANESLEIKASLMMDFFRTMISDG 704

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
            E  + AY  ++  LC    +  A +L   +T  G+ P+ V++   ++ LC
Sbjct: 705 WEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYGLC 755



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 7/218 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKD-ENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P     + ++      G V++A EL+    D  N  P+V+  N+L++          A  
Sbjct: 132 PTREALSFVVGAYVDSGLVNRALELYHIAYDIHNYLPDVIACNALLNALIQQKKVEIARK 191

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ EM+ R    D  +  +++  LCK RK++E  +L++     G  P      NIV Y  
Sbjct: 192 VYEEMVKRDGCWDNYSVCIMVRGLCKERKVEEGRKLINDRWGKGCIP------NIVFYNT 245

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG  K G ++ A  L + L   G +P   TY I I+ LC          L ++M+ +G
Sbjct: 246 LVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKKCNFKAVDGLLVEMKERG 305

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V  N  ++ +++ + I+     +V + LR + +    P
Sbjct: 306 VDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEP 343



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 85  DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
           DV+  N +++ L + +K++ A ++ + M++     D +      +   ++ GLCK  K++
Sbjct: 169 DVIACNALLNALIQQKKVEIARKVYEEMVKRDGCWDNY------SVCIMVRGLCKERKVE 222

Query: 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
             R+L       G +PN+V YN  +        +++A+ LF ++++KG  P    +  ++
Sbjct: 223 EGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMI 282

Query: 205 PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               +K     V  LL  M +R V     + + IVD  +K+
Sbjct: 283 NGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKH 323


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 128/247 (51%), Gaps = 6/247 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+  + +PN++TYN ++ G CK G ++ AK LF  +++ +   ++ +YN  + G      
Sbjct: 282 EYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGK 341

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EAE +  +M D+G+   + ++N++MD LCK   + +A  ++ LM + GV PDA     
Sbjct: 342 FIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDA----- 396

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V YGCL+ G C +GK+  A+ L Q + R   +PN  T NI +H+L    ++ +A +L  
Sbjct: 397 -VTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLR 455

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M  KG   + V    ++       E  K IE+++ M         ++ +  + L+  + 
Sbjct: 456 KMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSL 515

Query: 247 ISLNSIP 253
           I  N +P
Sbjct: 516 IENNCLP 522



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 33/266 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  T+  ++ G CK G  DK  EL   M+   + PN V YN+++  FC     +++E
Sbjct: 178 CKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSE 237

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM----IQGGVRPDA------ 121
            +  +M + GL  D+VTFN  +  LCK  K+ +A+R+   M      G  RP++      
Sbjct: 238 KMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLM 297

Query: 122 ---FCEINIV--------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              FC++ ++                    +Y   + GL + GK   A  + + +T  G+
Sbjct: 298 LKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGI 357

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P++ +YNI +  LC    +  A  +   M+  GV P+ V +  L+  +    +      
Sbjct: 358 GPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKS 417

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           LL+ M + N +P A   +I++  L K
Sbjct: 418 LLQEMMRNNCLPNAYTCNILLHSLWK 443



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 52/285 (18%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +YN ++DGLCK G +  AK +   MK   + P+ VTY  L+HG+C     + A+ L
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSL 418

Query: 74  FIEMM-----------------------------------DRGLQSDVVTFNVIMDELCK 98
             EMM                                   ++G   D VT N+I+D LC 
Sbjct: 419 LQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCG 478

Query: 99  NRKMDEATRLLDLM-IQG------------GVRPDAFCEIN----IVAYGCLIDGLCKIG 141
           + ++D+A  ++  M + G            G+  D+  E N    ++ Y  L++GLCK G
Sbjct: 479 SGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAG 538

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           +   A+ L   +    L P+ V YNI IH  C   ++  A  +  DME KG   +   + 
Sbjct: 539 RFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYN 598

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +L+     KN+  ++  L+  M ++ + P     +  +  L + E
Sbjct: 599 SLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGE 643



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 15/232 (6%)

Query: 4   GNREFGVV--------CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYN 55
           GN   G+V        C P+ +TY+T+++GLCK G   +AK LF +M  E + P+ V YN
Sbjct: 504 GNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYN 563

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
             IH FC     + A  +  +M  +G    + T+N ++  L    ++ E   L+D M + 
Sbjct: 564 IFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEK 623

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G+ P      NI  Y   I  LC+  K+++A  L   + +  + PNV ++   I A C  
Sbjct: 624 GISP------NICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKV 677

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
              D A ++F +  V        +++ +    +   +  K  ELL ++  R 
Sbjct: 678 PDFDMAQEVF-ETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRG 728



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 114/237 (48%), Gaps = 10/237 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   YN +++   KE  V+    L+  M    I P   T+N LI   C ++  + A  
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM ++G + +  TF +++   CK    D+   LL+ M   GV P      N V Y  
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLP------NKVIYNT 222

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK- 191
           ++   C+ G+  ++ ++ + +   GL+P++VT+N  I ALC + ++  A  +F DME+  
Sbjct: 223 IVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDE 282

Query: 192 --GVA-PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             G+  PN + +  ++  F +         L  S+ + + +      +I +  LV++
Sbjct: 283 YLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRH 339


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++ TY ++I G+CKEG +++A  LF +M +  + PN VTYN+LI G+C   D   A  
Sbjct: 240 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFS 299

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM+ +G+   V T+N+++  L    +M EA  ++  M + G+ PDA      + Y  
Sbjct: 300 YRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA------ITYNI 353

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  + G  K A +L   +   G+ P  VTY   I+ L    +M +A DLF  +  +G
Sbjct: 354 LINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG 413

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V+P+ ++F  ++          +   LL+ MD+++V P
Sbjct: 414 VSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPP 451



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 11/240 (4%)

Query: 6   REF-----GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           REF     G+  KPN V+YNTII G    G ++ A+ +   M+ + I P+  TY SLI G
Sbjct: 193 REFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISG 252

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C      EA  LF +M++ GL  + VT+N ++D  C    ++ A    D M++ G+ P 
Sbjct: 253 MCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMP- 311

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                ++  Y  L+  L   G++  A ++ + + + G++P+ +TYNI I+         +
Sbjct: 312 -----SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKR 366

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A DL  +M  KG+ P  V +T+L+    R+N   +  +L   +  + V P   + + ++D
Sbjct: 367 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMID 426



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 117/220 (53%), Gaps = 7/220 (3%)

Query: 29  EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT 88
           EG + KA+E    M+     PNVV+YN++IHG+    +   A  +   M  +G++ D  T
Sbjct: 186 EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYT 245

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           +  ++  +CK  +++EA+ L D M++ G+ P+A      V Y  LIDG C  G L+ A  
Sbjct: 246 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNA------VTYNTLIDGYCNKGDLERAFS 299

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
               + + G+MP+V TYN+ +HAL  + +M +A D+  +M  KG+ P+ + +  L+  + 
Sbjct: 300 YRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 359

Query: 209 RKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEI 247
           R     +  +L   M  + + P + +  S+I  L  +N +
Sbjct: 360 RCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 399



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 110/193 (56%), Gaps = 8/193 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTY ++I  L +   + +A +LF ++ D+ ++P+V+ +N++I G C AN   E  +
Sbjct: 380 EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHC-ANGNVERAF 438

Query: 73  LFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           + ++ MDR  +  D VTFN +M   C+  K++EA  LLD M   G++PD       ++Y 
Sbjct: 439 MLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDH------ISYN 492

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G  + G +K+A  +   +   G  P ++TYN  I  LC +++ D A +L  +M  K
Sbjct: 493 TLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK 552

Query: 192 GVAPNCVIFTTLM 204
           G++P+   + +L+
Sbjct: 553 GISPDDSTYLSLI 565



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 14/249 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G++  P+ +TYN +I+G  + G   +A +L  +M  + I P  VTY SLI+     N
Sbjct: 340 RKKGII--PDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRN 397

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA+ LF +++D+G+  DV+ FN ++D  C N  ++ A  LL  M +  V PD     
Sbjct: 398 RMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDE---- 453

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V +  L+ G C+ GK++ AR L   +   G+ P+ ++YN  I        +  A  + 
Sbjct: 454 --VTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVR 511

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSII-----V 239
            +M   G  P  + +  L+    +  E     ELL+ M  + + P  ++ LS+I     V
Sbjct: 512 DEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 571

Query: 240 DLLVKNEIS 248
           D LV++  S
Sbjct: 572 DTLVEDNAS 580



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 22/186 (11%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR----------------KMDEATRLLDLMIQGG 116
           L ++++ + +++ + T   + DEL  +R                K+ +A   +  M   G
Sbjct: 144 LALQLLKQVMETRIATNRELFDELTLSRDRLSVKSSIVFDLLEGKLKKAREFIGFMEGLG 203

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
            +P      N+V+Y  +I G    G ++ AR +  ++   G+ P+  TY   I  +C + 
Sbjct: 204 FKP------NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG 257

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++++A  LF  M   G+ PN V + TL+  +  K +  +       M K+ +MP  S  +
Sbjct: 258 RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYN 317

Query: 237 IIVDLL 242
           ++V  L
Sbjct: 318 LLVHAL 323


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 6/241 (2%)

Query: 7    EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
             +G  C P+ V YN +IDG C+ G + +   L  +M+     P +VTY SLI+      D
Sbjct: 1004 RWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGD 1063

Query: 67   GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              +   LF+EM  RG   +V  +N ++D LC  R   +A  +L  M   G  PD      
Sbjct: 1064 LEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPD------ 1117

Query: 127  IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            I+ +  LI GLC  G ++ A    +   R  L PN ++Y   IH  C   ++  A DL +
Sbjct: 1118 IITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLV 1177

Query: 187  DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            +M  +G  P+ V F  L+   +   + S+ + +   M +R V P  +I ++++  L K  
Sbjct: 1178 EMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKR 1237

Query: 247  I 247
            +
Sbjct: 1238 M 1238



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 123/267 (46%), Gaps = 45/267 (16%)

Query: 8    FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            F   C P+ +T+NT+I GLC EG V KA+    +     +NPN ++Y  LIHGFC   + 
Sbjct: 1110 FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGEL 1169

Query: 68   NEAEYLFIEMMDRGLQSDVVTF-----------------------------------NVI 92
              A  L +EMM RG   DVVTF                                   NV+
Sbjct: 1170 MVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVL 1229

Query: 93   MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
            +  LCK R +  A  +L+ M++  V+PD F       Y  LIDG  +   L +AR++ + 
Sbjct: 1230 ISGLCKKRMLPAAKNILEEMLEKNVQPDEF------VYATLIDGFIRSENLGDARKIFEF 1283

Query: 153  LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
            +   G+ P++V+ N  I   C    M +A     +M   G  P+   +TT++  + ++  
Sbjct: 1284 MEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGN 1343

Query: 213  TSKVIELLRSMDKR----NVMPYASIL 235
             +  +  L  M KR    NV+ Y+S++
Sbjct: 1344 LNGALRWLCDMIKRKCKPNVVTYSSLI 1370



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P  VTY ++I+ L K+G ++K   LFL+M+    +PNV  YNS+I   C      +A  +
Sbjct: 1046 PTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVI 1105

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +M   G   D++TFN ++  LC    + +A   L   I+  + P      N ++Y  L
Sbjct: 1106 LKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNP------NQLSYTPL 1159

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            I G C  G+L  A +L   +   G  P+VVT+   IH L    ++ +A  +   M  + V
Sbjct: 1160 IHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 1219

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             P+  I+  L+    +K        +L  M ++NV P   + + ++D  +++E
Sbjct: 1220 FPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSE 1272



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 6/199 (3%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+   YN +I GLCK+  +  AK +  +M ++N+ P+   Y +LI GF  + +  +A  +
Sbjct: 1221 PDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 1280

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            F  M  +G+  D+V+ N ++   C+   M EA   +  M + G  PD F       Y  +
Sbjct: 1281 FEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEF------TYTTV 1334

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            I G  K G L  A      + +    PNVVTY+  I+  C     D A  LF +M+ + +
Sbjct: 1335 ISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEAL 1394

Query: 194  APNCVIFTTLMPSFIRKNE 212
            +PN V +T L+ S  +K++
Sbjct: 1395 SPNVVTYTILIGSLFKKDK 1413



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            +P+   Y T+IDG  +   +  A+++F  M+ + + P++V+ N++I G+C     +EA  
Sbjct: 1255 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAIL 1314

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
                M   G   D  T+  ++    K   ++ A R L  MI+   +P      N+V Y  
Sbjct: 1315 CMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKP------NVVTYSS 1368

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            LI+G CK G   +A  L  ++    L PNVVTY I I +L   +++ +A   F  M +  
Sbjct: 1369 LINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNH 1428

Query: 193  VAPNCVIFTTLM 204
             +PN V    L+
Sbjct: 1429 CSPNDVTLHYLV 1440



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 30/236 (12%)

Query: 10   VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
            V C P+  TY T+I G  K+G ++ A      M      PNVVTY+SLI+G+C   D + 
Sbjct: 1322 VGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDS 1381

Query: 70   AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            AE LF  M    L  +VVT+ +++  L K  K+  A    + M+         C  N V 
Sbjct: 1382 AEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLN------HCSPNDVT 1435

Query: 130  YGCLIDGL------------CKIGKLKNARELSQSLTRAGL---MPNVVTYNITIHALCN 174
               L++GL            C   ++     L     +       P    YN  I +LC 
Sbjct: 1436 LHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCR 1495

Query: 175  DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
               + +A D    M  KG  PN + F +L+  F           + +S++ R ++P
Sbjct: 1496 HNMLREALDFKNRMAKKGYVPNPITFLSLLYGF---------CSVGKSVNWRTILP 1542



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 15/234 (6%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P  + ++T++  L +    D   +    M      P      +L+  +  A    +A   
Sbjct: 870  PTPLAHSTLLRLLARSRRFDAVDDTLQSMSLAGAAPTRACLGALVAAYADAGMLGKA--- 926

Query: 74   FIEMMDR-----GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
              EM +R     G   +V   N ++  L + R+ D+A +L D M+      D +      
Sbjct: 927  -TEMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTC--- 982

Query: 129  AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
                L+ GLC   +++   +L ++   AG +P+VV YN+ I   C    M +   L  +M
Sbjct: 983  ---VLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEM 1039

Query: 189  EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            E  G  P  V + +L+    +K +  K+  L   M KR   P   I + ++D L
Sbjct: 1040 ETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDAL 1093


>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 360

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TY+  I+  C+   +  A  +  +M      P++VT NSL++GFC+ N  +EA  L 
Sbjct: 109 NLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 168

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M++ G Q D VTF  ++  L ++ K  EA  L++ M+  G +PD      +V YG +I
Sbjct: 169 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD------LVTYGAVI 222

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G+   A  L   + +  +  +VV YN  I  LC  + MD A DLF  ME KG+ 
Sbjct: 223 NGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIK 282

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+   +  L+         S    LL  M ++N+ P     + ++D  VK
Sbjct: 283 PDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK 332



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT N++++G C    + +A  L  QM +    P+ VT+ +L+HG    N  +EA  L
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ +G Q D+VT+  +++ LCK  + D A  LL+ M +G +  D      +V Y  +
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEAD------VVIYNTI 256

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK   + +A +L   +   G+ P+V TYN  I  LCN  +   A  L  DM  K +
Sbjct: 257 IDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNI 316

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V F  L+ +F+++ +  +  +L   M KR++ P
Sbjct: 317 NPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKRSIDP 353



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 6/186 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TVT+ T++ GL +     +A  L  +M  +   P++VTY ++I+G C   + + A  
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 236

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M    +++DVV +N I+D LCK + MD+A  L + M   G++PD F       Y  
Sbjct: 237 LLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVF------TYNP 290

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC  G+  +A  L   +    + P++V +N  I A   + ++ +A  L+ +M  + 
Sbjct: 291 LISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKRS 350

Query: 193 VAPNCV 198
           + P+ V
Sbjct: 351 IDPSFV 356



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY  +I+GLCK G  D A  L  +M+   I  +VV YN++I G C     ++A 
Sbjct: 211 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAF 270

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF +M  +G++ DV T+N ++  LC   +  +A+RLL  M++  + PD      +V + 
Sbjct: 271 DLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPD------LVFFN 324

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
            LID   K GKL  A +L   + +  + P+ V
Sbjct: 325 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSFV 356



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 66/113 (58%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + V YNTIIDGLCK   +D A +LF +M+ + I P+V TYN LI   C     ++A  
Sbjct: 247 EADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASR 306

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           L  +M+++ +  D+V FN ++D   K  K+ EA +L D M++  + P   C I
Sbjct: 307 LLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKRSIDPSFVCTI 359



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 6/228 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           +D A  LF  M      P++V ++ L+      N  +    L  +M + G+  ++ T+++
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
            ++  C+  ++  A  +L  M++ G  P      +IV    L++G C   ++  A  L  
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGP------SIVTLNSLLNGFCHGNRISEAVALVD 169

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G  P+ VT+   +H L    +  +A  L   M VKG  P+ V +  ++    ++ 
Sbjct: 170 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 229

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           E    + LL  M+K  +     I + I+D L K +   ++   FN+ +
Sbjct: 230 EPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME 277


>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
 gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
          Length = 316

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 14/228 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +I+ LCK G   +A+E+F  M      PN  TY SL+HG  YA +GN  +  
Sbjct: 8   PNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHG--YATEGNLVDMN 65

Query: 74  FIE--MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++  M+  G++ D   FN+ +   CK  ++DEA+   + M Q G  PD      IV Y 
Sbjct: 66  NVKDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPD------IVTYT 119

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGLCKIG+L +A      +   GL PN++T+   IH      + +KA +LF +M  +
Sbjct: 120 TVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDR 179

Query: 192 GVAPNCVIFTTLMPSFIRKN---ETSKVIELL-RSMDKRNVMPYASIL 235
           G+ PN   F +++    ++    E  K+ +L+ R+  K NV+ Y +++
Sbjct: 180 GIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMI 227



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 108/210 (51%), Gaps = 22/210 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY T+IDGLCK G +D A   F QM D+ ++PN++T+ +LIHGF       +AE L
Sbjct: 113 PDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEEL 172

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EMMDRG+  +V TFN ++D L K  K+ EA +L DLM + G +P      N+V+Y  +
Sbjct: 173 FYEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKP------NVVSYNTM 226

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G    G++    +L   +   GL PN V  N  +  + +                 G+
Sbjct: 227 IHGYFIAGEVGEVMKLLDDMLLIGLKPNAVNLNTLLDGMLS----------------IGL 270

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            PN     TL+ S    +    ++ L R M
Sbjct: 271 KPNVDTCKTLIDSCCEDDRIEDILTLFREM 300



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 12/231 (5%)

Query: 13  KPNTVTYNTIIDGLCKEG-FVD--KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           KPN  TY +++ G   EG  VD    K+L +Q     + P+   +N  I+ +C     +E
Sbjct: 42  KPNAATYRSLLHGYATEGNLVDMNNVKDLMVQ---NGMRPDRHVFNIEIYAYCKCGRLDE 98

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   F +M   G   D+VT+  ++D LCK  ++D+A      MI  G+ P      NI+ 
Sbjct: 99  ASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSP------NIIT 152

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LI G    GK + A EL   +   G+ PNV T+N  I  L  + ++ +A  LF  M 
Sbjct: 153 FTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMP 212

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             G  PN V + T++  +    E  +V++LL  M    + P A  L+ ++D
Sbjct: 213 RAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPNAVNLNTLLD 263



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 16/112 (14%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V+YNT+I G    G V +  +L   M    + PN V  N+L+ G            
Sbjct: 217 KPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPNAVNLNTLLDG------------ 264

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               M+  GL+ +V T   ++D  C++ ++++   L   M+    + D   E
Sbjct: 265 ----MLSIGLKPNVDTCKTLIDSCCEDDRIEDILTLFREMLSKADKTDTITE 312


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 125/222 (56%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 186

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 187 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVTFTTLIDGHC 240

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    +++AH L  +M +KG+ P+  
Sbjct: 241 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKF 300

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +I+S
Sbjct: 301 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIIS 342



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 104/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D N+A  L
Sbjct: 227 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGL 286

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D  T+  ++D  CK   +D A      MIQ  +R D       VAY  +
Sbjct: 287 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDD------VAYTAI 340

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 341 ISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 400

Query: 194 APNCVIFTTLM 204
            P+   +  LM
Sbjct: 401 VPSVXTYNVLM 411



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 250

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   +++A  L+D M   G++PD F       Y  
Sbjct: 251 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKF------TYTT 304

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 305 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVG 364

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+   +T ++  F +K +  K  +LL+ M +   +P     +++++
Sbjct: 365 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMN 412



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 156 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 215

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 216 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD------LITYNT 269

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G L  A  L   ++  GL P+  TY   I   C +  +D A +    M  + 
Sbjct: 270 LIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQEN 329

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T ++    ++       ++LR M    + P     ++I++   K 
Sbjct: 330 IRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 382



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 90/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 111 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 164

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 165 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 224

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 225 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 262



 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 12/204 (5%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRK-MDEATRLLD 110
           +Y ++IH  C     +EA+ L   ++ R G  S    F  I++     R  +   + L+ 
Sbjct: 3   SYCTMIHFLCTHQMFSEAKSLIQXVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 62

Query: 111 LMIQGGVRPDAF-C-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMP 160
             ++ G   DA  C       ++ +    C  +++ L K+   K      + +   G   
Sbjct: 63  AYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPA 122

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++  +NI +H  C D  +  A  +F  +   G+ P+ V + TLM  +IR  +  +   L 
Sbjct: 123 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 182

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
            +M    V P     S++++ L K
Sbjct: 183 SAMLASGVQPDVYTYSVLINGLCK 206



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+T TY  II+  CK+G V K  +L  +M+     P+V TYN L++G
Sbjct: 366 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV+YN+L+ G+    D +E   L   M 
Sbjct: 128 FNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMH 187

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMDEA  L D M+  G+ P        V +  LIDG C
Sbjct: 188 ASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXG------VTFTTLIDGHC 241

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AH L  +M +KG  P+ +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKI 301

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 302 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 343



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 101/191 (52%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   B  +A  L
Sbjct: 228 PXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVL 287

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G + D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 288 IXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYTAL 341

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   G  P+  TY + I+  C    +     L  +M+  G 
Sbjct: 342 ISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 401

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 402 VPSVVTYNVLM 412



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT++ G  + G +D+   L   M    + P+V TY+ LI+G C     +EA  
Sbjct: 157 RPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANE 216

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+  GL    VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 217 LFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD------LITYNT 270

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  G  P+ +TY   I   C +  +D A +    M  + 
Sbjct: 271 LIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN 330

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M      P     ++I++   K 
Sbjct: 331 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKK 383



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D+A ELF +M    + P  VT+ +LI G C     + A  
Sbjct: 192 QPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAME 251

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+  M   G +PD       + Y  
Sbjct: 252 IYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDK------ITYTT 305

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 306 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 365

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             P+   +T ++  F +K +     +LL+ M +   +P
Sbjct: 366 XKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 403



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK   +  A  + D + + G+RP      ++V+Y  
Sbjct: 112 FYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRP------SVVSYNT 165

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD+A++LF +M V G
Sbjct: 166 LMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXG 225

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P  V FTTL+    +       +E+ + M  ++++P
Sbjct: 226 LVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 263



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+IDG CKEG +D A E   +M  ENI  + V Y +LI G C      +AE 
Sbjct: 297 KPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEK 356

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  G + D  T+ +I++E CK   +   ++LL  M + G  P      ++V Y  
Sbjct: 357 MLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP------SVVTYNV 410

Query: 133 LIDG 136
           L++G
Sbjct: 411 LMNG 414



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 50/113 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      Q +   G   ++  +NI +H  C +  +  A  +F  +   G
Sbjct: 96  VLEHLMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWG 155

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K 
Sbjct: 156 LRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKE 208


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 8/240 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R++G+  +P+ V++NT+++G  ++G +DK   L   M    + P+V TY+ LI+G C  +
Sbjct: 163 RKWGL--RPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKES 220

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +EA  LF EM+D+GL  + VTF  ++D  CKN K+D A  +   M+   + PD     
Sbjct: 221 KMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPD----- 275

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            ++ Y  LI GLCK G LK AR L   ++  GL P+ +TY   I   C D  ++ A +  
Sbjct: 276 -LITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYR 334

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             M  + +  + V +T L+    ++  +    ++LR M    + P +   ++I++   K 
Sbjct: 335 KRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKK 394



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 122/222 (54%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  ++ +F  ++   + P+VV++N+L++G+    D ++   L   M 
Sbjct: 139 FNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMDEA  L   M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GK+  A E+ + +    L P+++TYN  I+ LC    + +A +L  +M +KG+ P+ +
Sbjct: 253 KNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    +  +     E  + M + N+    + Y +++S
Sbjct: 313 TYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALIS 354



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D+A ELF +M D+ + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L++ M   G++PD       + Y  
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + +    +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +     +LL+ M +   +P
Sbjct: 377 LKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 414



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK+  ++ A      MI+  +R D       VAY  L
Sbjct: 299 INEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 VPSVV 417



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK  ++  +  + D + + G+RP      ++V++  
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  + G L     L  ++  +G+ P+V TY++ I+ LC + +MD+A++LF +M  KG
Sbjct: 177 LMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +  +    +E+ + M  +++ P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSP 274



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 52/112 (46%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C + ++  +  +F  +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +IR+ +  K   L  +M    V P     S++++ L K
Sbjct: 167 LRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCK 218



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P+  TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGHVPSVVT 418


>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 567

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  +++ LCK G V  A +L  +M+D     N VTYN+L+ G C   + N++   
Sbjct: 130 PDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQF 189

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +M +GL  +  T++ +++   K R ++EA RLLD +I  G +P      N+V+Y  L
Sbjct: 190 LDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQP------NLVSYNVL 243

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLCK G+++ A  L ++L   G  PNVV+YNI + +LC + + ++A++L  +M  +  
Sbjct: 244 LTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRER 303

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+ V +  L+ S     +  + ++++  M      P A+  + I+  L K
Sbjct: 304 SPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCK 354



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 109/209 (52%), Gaps = 6/209 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NTVTYNT++ GLC  G ++K+ +   ++  + + PN  TY+SL+         NEA  L 
Sbjct: 166 NTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLL 225

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            E++ +G Q ++V++NV++  LCK  +++EA RL   +   G  P      N+V+Y  L+
Sbjct: 226 DEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSP------NVVSYNILL 279

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC  G+ + A EL   +      P++VTYNI I +L    ++++A  +  +M +    
Sbjct: 280 RSLCYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFK 339

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           P    +  ++    ++ +   V+  L  M
Sbjct: 340 PTATSYNPIIARLCKEGKVEAVVNCLDQM 368



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 63/297 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V+YN ++ GLCKEG +++A  LF  +  +  +PNVV+YN L+   CY     EA  
Sbjct: 234 QPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANE 293

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  R     +VT+N+++  L  + K+++A +++D M+ G  +P A     I+A  C
Sbjct: 294 LLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLC 353

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSL----------- 153
                                        I  LC  GK++ A  L QSL           
Sbjct: 354 KEGKVEAVVNCLDQMIFGRCSPNEGTFNAIAVLCYEGKVQEAFSLIQSLGNKQNSSIHDY 413

Query: 154 ------------------------TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
                                   T+ G  P+  TY+  I  LC +  + +A ++F  +E
Sbjct: 414 YKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLE 473

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
                P+   F  L+  F + + T   +E+   M ++   P  +  +I+V+ ++  E
Sbjct: 474 EDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEE 530



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 7/228 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   +YN II  LCKEG V+       QM     +PN  T+N+ I   CY     EA  
Sbjct: 339 KPTATSYNPIIARLCKEGKVEAVVNCLDQMIFGRCSPNEGTFNA-IAVLCYEGKVQEAFS 397

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   + ++   S    +  ++  LCK      A  LL  M + G  PD++       Y  
Sbjct: 398 LIQSLGNKQNSSIHDYYKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSY------TYSS 451

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  G L  A E+ + L      P++  +N  I   C   + D + ++F  M  KG
Sbjct: 452 LIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKG 511

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             P+   +T L+   I + E     E+LR +  R VM  +++  +I+ 
Sbjct: 512 YTPSETTYTILVEGIIHEEEKELAAEVLRELHLRQVMSQSTVERLIMQ 559



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 85/163 (52%), Gaps = 6/163 (3%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           ++A +    ++  G + DVV    ++ +LCK+ KM +A R++++MI  G+ PDA      
Sbjct: 79  SDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDA------ 132

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            +Y  L++ LCK G +  A +L + +  +G   N VTYN  +  LC    ++K+      
Sbjct: 133 ASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDR 192

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +  KG+ PN   +++L+ +  ++   ++ + LL  +  +   P
Sbjct: 193 LMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQP 235



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 6/151 (3%)

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
           D+  ++ ++ +A   L+ +++ G +PD      +V    L+  LCK  K+K A  + + +
Sbjct: 70  DQRNRDMRISDAFFHLEHIVKNGHKPD------VVQATQLLYDLCKSNKMKKAIRVMEMM 123

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              G++P+  +Y   ++ LC    +  A  L   ME  G   N V + TL+         
Sbjct: 124 ISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNL 183

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +K ++ L  + ++ ++P A   S +++   K
Sbjct: 184 NKSLQFLDRLMQKGLVPNAFTYSSLLEAAYK 214


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            YNT++ G C+ G +D A+ L   M    + P+  TY  LI   C      +A  L  +M
Sbjct: 113 AYNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDM 169

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           + RG Q +VVT+ V+++ +C+N   ++A  +LD M   G  P      NIV Y  +I+G+
Sbjct: 170 LRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTP------NIVTYNVIINGM 223

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C+ G++ +AREL   L   G  P+ V+Y   +  LC  ++ D   +LF +M  K   PN 
Sbjct: 224 CREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNE 283

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V F  L+  F R     + I++L  M +       ++ +I+++ + K 
Sbjct: 284 VTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQ 331



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 123/261 (47%), Gaps = 42/261 (16%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN II+G+C+EG VD A+EL  ++      P+ V+Y +L+ G C +   ++ E
Sbjct: 209 CTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVE 268

Query: 72  YLFIEMMDRGLQSDVVTF-----------------------------------NVIMDEL 96
            LF EMM++    + VTF                                   N++++ +
Sbjct: 269 ELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSI 328

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK  ++D+A +LL+ M   G  PD       ++Y  ++ GLC+  +  +A+EL   + R 
Sbjct: 329 CKQGRVDDAFKLLNDMGSYGCNPDT------ISYTTVLKGLCRAERWDDAKELLNEMVRN 382

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
              PN VT+N  I  LC    +++A  L   M   G     V +  L+  F  +      
Sbjct: 383 NCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSA 442

Query: 217 IELLRSMD-KRNVMPYASILS 236
           +EL RSM  K N + Y ++L+
Sbjct: 443 LELFRSMPCKPNTITYTTLLT 463



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 9/235 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T++Y T++ GLC+    D AKEL  +M   N  PN VT+N+ I   C      +A 
Sbjct: 349 CNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAI 408

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M + G    VVT+N +++  C    +D A  L   M          C+ N + Y 
Sbjct: 409 MLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---------CKPNTITYT 459

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLC   +L  A EL   + R    PNVVT+N+ +   C    +++A +L   M   
Sbjct: 460 TLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEH 519

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  PN + + TL+    +   +   +ELL  +  + V P     S I+ +L K +
Sbjct: 520 GCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKED 574



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 9/234 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  NT   N +I+ +CK+G VD A +L   M     NP+ ++Y +++ G C A   ++A+
Sbjct: 314 CATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAK 373

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      + VTFN  +  LC+   +++A  L++ M + G      C + +V Y 
Sbjct: 374 ELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHG------CTVGVVTYN 427

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++G C  G + +A EL +S+      PN +TY   +  LCN E++D A +L  +M   
Sbjct: 428 ALVNGFCVQGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRG 484

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              PN V F  L+  F +K    + IEL+  M +    P     + ++D + K+
Sbjct: 485 DCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKD 538



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 9/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C    VTYN +++G C +G +D A ELF  M      PN +TY +L+ G C A   + A 
Sbjct: 419 CTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERLDGAA 475

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+      +VVTFNV++   C+   ++EA  L++ M++ G  P      N++ Y 
Sbjct: 476 ELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTP------NLITYN 529

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG+ K    ++A EL   L   G+ P+V+T++  I  L  ++++++A  LF  ++  
Sbjct: 530 TLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDI 589

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G+ P  V++  ++    ++ E    I+    M     MP  S   I+++ L 
Sbjct: 590 GMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLA 641



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTY  +++ +C+    ++A  +  +M+ +   PN+VTYN +I+G C     ++A 
Sbjct: 174 CQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 233

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   +   G Q D V++  ++  LC +++ D+   L   M++    P      N V + 
Sbjct: 234 ELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMP------NEVTFD 287

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI   C+ G ++ A ++ + +T  G   N    NI I+++C   ++D A  L  DM   
Sbjct: 288 MLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSY 347

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G  P+ + +TT++    R        ELL  M + N  P
Sbjct: 348 GCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPP 386



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNT+TY T++ GLC    +D A EL  +M   +  PNVVT+N L+  FC      EA 
Sbjct: 451 CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAI 510

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +MM+ G   +++T+N ++D + K+   ++A  LL  ++  GV PD      ++ + 
Sbjct: 511 ELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPD------VITFS 564

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  L K  +++ A +L   +   G+ P  V YN  +  LC   ++D A D F  M   
Sbjct: 565 SIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSN 624

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  PN   +  L+     +    +  +LL  +  R V+
Sbjct: 625 GCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGVL 662



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 15/184 (8%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G   DV     ++  LC+  +  +A R+L    +G   P     +++ AY  L+ G C+ 
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLR-AAEGSGSP-----VDVFAYNTLVAGYCRY 124

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G L  AR L  S+  A   P+  TY   I  LC+  ++  A  L  DM  +G  PN V +
Sbjct: 125 GHLDAARRLIGSMPVA---PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTY 181

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN------EISLNSIPQ 254
           T L+ +  R +   + + +L  M  +   P     ++I++ + +          LN +P 
Sbjct: 182 TVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPS 241

Query: 255 FNRQ 258
           +  Q
Sbjct: 242 YGFQ 245


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+YNTI+D LCK+G +++A++L L MK+  + PN  T+N L+ G+C      EA 
Sbjct: 243 CFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAA 302

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M    +  DV T+N+++  LCK+ K+DEA RL D M    + PD      +V Y 
Sbjct: 303 QVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPD------VVTYN 356

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G           EL   +   G+ PN VTYN+ +     + +MD A +    ME  
Sbjct: 357 TLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEES 416

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G +P+CV F TL+  + +    S+   ++  M ++ +   +  L+ I+  L
Sbjct: 417 GFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTL 467



 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   KPN VTYN ++    KEG +D A     +M++   +P+ VT+N+LI+G+C A   +
Sbjct: 380 GKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLS 439

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  +  EM  +GL+ + VT N I+  LC  RK+D+A +LL    + G   D       V
Sbjct: 440 EAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDE------V 493

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +YG LI G  K GK   A +L   +    ++P+++TYN  I  LC+  + D++ D   ++
Sbjct: 494 SYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNEL 553

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              G+ P+   + T++  + R+ +  K  +    M K++  P
Sbjct: 554 LESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKP 595



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K NT T+N +I G C E  + +A  L  +MKD +  P+ V+YN+++   C     NEA  
Sbjct: 209 KVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARD 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L ++M + GL  +  TFN+++   CK   + EA +++DLM Q  V PD +       Y  
Sbjct: 269 LLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVW------TYNM 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK GK+  A  L   +    L+P+VVTYN  I+   +     K  +L   ME KG
Sbjct: 323 LIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V PN V +  ++  ++++ +       LR M++    P
Sbjct: 383 VKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSP 420



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 9/243 (3%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCK---EGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           NR   +  KPN +T NT+I+ L +   +  V  +K +F  +    +  N  T+N LI+G 
Sbjct: 163 NRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGC 222

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           C  N  +EA  L  +M D     D V++N I+D LCK  K++EA  LL  M   G+ P  
Sbjct: 223 CIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLP-- 280

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
               N   +  L+ G CK+G LK A ++   + +  ++P+V TYN+ I  LC D ++D+A
Sbjct: 281 ----NRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEA 336

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             L  +ME   + P+ V + TL+      + + K  EL+  M+ + V P A   +++V  
Sbjct: 337 FRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKW 396

Query: 242 LVK 244
            VK
Sbjct: 397 YVK 399



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N+VT NTI+  LC E  +D A +L           + V+Y +LI G+       EA  
Sbjct: 454 KMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMK 513

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM ++ +   ++T+N ++  LC + K D++   L+ +++ G+ PD         Y  
Sbjct: 514 LWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDE------TTYNT 567

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C+ G+++ A +    + +    P++ T NI +  LC +  +DKA  LF     KG
Sbjct: 568 IILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKG 627

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVD 240
            A + V + T++    +++   +  +LL  M+++ + P    Y +ILS + D
Sbjct: 628 KAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALAD 679



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 31/230 (13%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  P+  TYNTII G C+EG V+KA +   +M  ++  P++ T N L+ G C    
Sbjct: 555 ESGLV--PDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGM 612

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++A  LF   + +G   D VT+N I+  LCK  + +EA  LL  M +  + PD +    
Sbjct: 613 LDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCY---- 668

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-----------------------PNVV 163
              Y  ++  L   G++K A E    +   G +                       PN V
Sbjct: 669 --TYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSV 726

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
           T++  I+ LC   +   A  +  +   KG+  +   + +LM   I++ ++
Sbjct: 727 TFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYISLMEGLIKRRKS 776



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 6/171 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYNT+I GLC  G  D++ +   ++ +  + P+  TYN++I G+C      +A   
Sbjct: 525 PSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQF 584

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ +  + D+ T N+++  LC    +D+A +L +  I  G   DA      V Y  +
Sbjct: 585 HNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDA------VTYNTI 638

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           I GLCK  + + A +L   +    L P+  TYN  + AL +  +M +A + 
Sbjct: 639 ISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEF 689



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 44/214 (20%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFC-YANDGNE--AEYLFIEMMDRGLQSDVVTFNV 91
           A ++F +MK  ++ PN++T N+LI+    Y +  +   ++ +F +++  G++ +  TFN+
Sbjct: 158 AAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNI 217

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++   C   K+ EA  L                               IGK+K+      
Sbjct: 218 LIYGCCIENKLSEAIGL-------------------------------IGKMKDF----- 241

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
                   P+ V+YN  +  LC   ++++A DL LDM+  G+ PN   F  L+  + +  
Sbjct: 242 -----SCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLG 296

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              +  +++  M + NV+P     ++++  L K+
Sbjct: 297 WLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKD 330


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 11/234 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA- 70
           C P+ VT+N +I  LC++GFV +A ++  QM +    P+++TY+S++ G C     +EA 
Sbjct: 296 CAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAI 355

Query: 71  ---EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
              + L  EM+ +    D VTFN I+  LC+    D A +++D M + G  PD      I
Sbjct: 356 KLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPD------I 409

Query: 128 VAYGCLIDG-LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             Y C++DG LCK  K + A +L   +   GL P+  TY      L  +++M++A  +F 
Sbjct: 410 TTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFR 469

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            ++  G++P+ +++  ++    +K  T   I+    M     MP  S   I+V+
Sbjct: 470 RVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVE 523



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 9/228 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +TYNT+++G C+ G +D A+ +   +      P+  TYN LI   C      +A  +F +
Sbjct: 129 ITYNTMVNGYCRAGNIDAARRMIDSVP---FAPDTFTYNPLIRALCVRGCVLDALAVFDD 185

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+ RG    VVT+++++D  CK     +A  LLD M   G  PD      IV Y  LI+ 
Sbjct: 186 MLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPD------IVTYNVLINA 239

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           +C  G +  A ++  SL   G  P+ VTY   + +LC+ E+ ++A  L   M     AP+
Sbjct: 240 MCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPD 299

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V F  ++ S  +K    +  ++L  M +    P     S I+D L K
Sbjct: 300 EVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCK 347



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 10/233 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY+ ++D  CKE    +A  L  +M+ +   P++VTYN LI+  C   D  EA 
Sbjct: 191 CSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEAL 250

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   +   G + D VT+  ++  LC + + +EA +LL  M      PD       V + 
Sbjct: 251 KVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDE------VTFN 304

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA----HDLFLD 187
            +I  LC+ G +  A ++   ++  G  P+++TY+  +  LC + ++D+A     +L  +
Sbjct: 305 AVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAE 364

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           M  K   P+ V F T++ S  +K    + I+++  M +   +P  +  + IVD
Sbjct: 365 MVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVD 417



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 11/214 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKA----KELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           C P+ +TY++I+DGLCKE  VD+A    KEL  +M  +N  P+ VT+N++I   C     
Sbjct: 331 CTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLF 390

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDE-LCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
           + A  +  EM + G   D+ T+N I+D  LCK+ K +EA  LL+LM+  G+ PD      
Sbjct: 391 DRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDT----- 445

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y  L  GL +  +++ A  + + +   GL P+ + YN  +  LC   + D A D F 
Sbjct: 446 -TTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFA 504

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            M   G  P+   +  L+     +    +  ELL
Sbjct: 505 YMVSNGCMPDESTYIILVEGIAYEGFLEEAKELL 538



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N  + GL + G +D A  L   +     +P V+  N LI   C      +AE + +E + 
Sbjct: 65  NRRLRGLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERV-VEAL- 122

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G  + ++T+N +++  C+   +D A R++D +      PD F       Y  LI  LC 
Sbjct: 123 -GPSATIITYNTMVNGYCRAGNIDAARRMIDSV---PFAPDTF------TYNPLIRALCV 172

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G + +A  +   +   G  P+VVTY+I + A C +    +A  L  +M  KG  P+ V 
Sbjct: 173 RGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVT 232

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +  L+ +   + +  + +++L S+      P A   + ++  L  +E
Sbjct: 233 YNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSE 279


>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g38730-like [Brachypodium distachyon]
          Length = 599

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+NT+I GLCKEG + +A +L   M    + P+ VTY +L+ G+C   D  EA  
Sbjct: 248 EPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDVGEAVK 307

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G+   V T+N I+ +LC++ KM E   LL  M    V+ D       V    
Sbjct: 308 LREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQADH------VTCNT 361

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+   K G + +A ++ + +  +GL  +  TY   IH  C  +++D+A +   +M  +G
Sbjct: 362 LINSYAKRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMMGRG 421

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +PN  +F+ L+  F +KN T  V+ +   + KR + P  S+   ++  L K 
Sbjct: 422 FSPNYSVFSWLVDGFCKKNNTDAVLLIPDELIKRGLPPDKSVYRSLIRRLCKK 474



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 10/211 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NT  YN ++    K     +A+ L  +M    +  +  ++N++I    Y   G + E + 
Sbjct: 180 NTHVYNAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVI--ALYVRKGMQYEAMC 237

Query: 75  IE--MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M D G++ D+VT+N ++  LCK  +M EA +L   MI   V PD       V Y  
Sbjct: 238 VRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPD------TVTYTT 291

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C+IG +  A +L + +   G++P V TYN  I  LC D +M + + L  +M+ + 
Sbjct: 292 LVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRK 351

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           V  + V   TL+ S+ ++ + +   ++ + M
Sbjct: 352 VQADHVTCNTLINSYAKRGDMTSACKVKKRM 382



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYN II  LC++G + +   L  +M    +  + VT N+LI+ +    D   A  +
Sbjct: 319 PGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQADHVTCNTLINSYAKRGDMTSACKV 378

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              MM+ GLQ D  T+  ++   CK +++DEA   L  M+  G  P      N   +  L
Sbjct: 379 KKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMMGRGFSP------NYSVFSWL 432

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK         +   L + GL P+   Y   I  LC    +D A  +   M+ KG+
Sbjct: 433 VDGFCKKNNTDAVLLIPDELIKRGLPPDKSVYRSLIRRLCKKGLVDLAQKVLHQMQGKGL 492

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             +C+++ TL  + +   + +   ++L  M ++ +
Sbjct: 493 EVDCLVYATLAYAHLTAGKVAAASDILNEMARKQM 527



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY  +I G CK   +D+AKE   +M     +PN   ++ L+ GFC  N+ +    +  E+
Sbjct: 393 TYKALIHGFCKAKELDEAKEALFEMMGRGFSPNYSVFSWLVDGFCKKNNTDAVLLIPDEL 452

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           + RGL  D   +  ++  LCK   +D A ++L  M   G+      E++ + Y  L    
Sbjct: 453 IKRGLPPDKSVYRSLIRRLCKKGLVDLAQKVLHQMQGKGL------EVDCLVYATLAYAH 506

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYN 166
              GK+  A ++   + R  +      YN
Sbjct: 507 LTAGKVAAASDILNEMARKQMSVTPQIYN 535



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 29/226 (12%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P+V ++  L     ++   ++A  +F +M  RGL  D      ++  L + R    A ++
Sbjct: 109 PHVPSWLLLALSHSHSARPHDAARVFDQMRARGLAPDAHACTALLTALARARMTATAHKV 168

Query: 109 LDLMIQGGV----------------------------RPDAF-CEINIVAYGCLIDGLCK 139
            + M + GV                            R DA    ++  ++  +I    +
Sbjct: 169 FNEMGRAGVAMNTHVYNAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVR 228

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G    A  + + +   G+ P++VT+N  IH LC + +M +A  L  DM    V P+ V 
Sbjct: 229 KGMQYEAMCVRERMQDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVT 288

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +TTL+  + R  +  + ++L   M+   ++P  +  + I+  L ++
Sbjct: 289 YTTLVDGYCRIGDVGEAVKLREEMEAGGMVPGVATYNAIIRKLCED 334


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 118/210 (56%), Gaps = 6/210 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 139 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AH L  +M VKG+ P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +TTL+    ++ +     E  + M + N+
Sbjct: 313 TYTTLIDGCCKEGDLDSAFEHRKRMIQENI 342



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A +L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 299 IDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
             GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 353 XSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 VPSVV 417



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L +A E  + + +  +  + V Y      LC + +   A  +  +M   G
Sbjct: 317 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 377 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 414



 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L     ++  +    ++LR M    + P A   ++I++   K 
Sbjct: 342 IRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 394



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 123 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 177 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 50/113 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K 
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 219



 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V Y  +  GLC+EG    A+++  +M    + P+  TY  +I+ FC   D  +   L 
Sbjct: 345 DEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 404

Query: 75  IEMMDRGLQSDVVT 88
            EM   G    VVT
Sbjct: 405 KEMQRDGHVPSVVT 418


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD A  L D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVP------NGVTFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AHDL  +M +KG+ P+  
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 360



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 104/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D  T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M   G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGH 418

Query: 194 APNCVIFTTLM 204
           AP+ V +  LM
Sbjct: 419 APSVVTYNVLM 429



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD F       Y  
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF------TYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +    P
Sbjct: 383 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAP 420



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  + A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+  TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 400



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 90/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 280



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+T TY  II+  CK+G V K  +L  +M  +   P+VVTYN L++G
Sbjct: 384 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score = 43.5 bits (101), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 172

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P+  TYNT+I GLCK+G++  A+EL  +M+ +   PNV+TY  LI  FC      E
Sbjct: 401 VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEE 460

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  +  EM  +GL  + V +N ++  LCK+ K+ +A  +   M   G +PD F       
Sbjct: 461 ARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF------T 514

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LI GLCK+ K + A  L Q +   G++ N +TYN  IHA      M +A  L  DM 
Sbjct: 515 FNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDML 574

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +G   + + +  L+ +  R     K + L   M  + + P
Sbjct: 575 FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNP 615



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 117/214 (54%), Gaps = 7/214 (3%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  PN V +NT+I+G    G +D+AK +  + M      P++ TYN+LI G C       
Sbjct: 366 VPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVS 425

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  EM  +G + +V+T+ +++D  CK  +++EA  +LD M   G+       +N V 
Sbjct: 426 ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGL------ALNAVG 479

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y CLI  LCK  K+++A  +   ++  G  P++ T+N  I  LC   + ++A  L+ DM 
Sbjct: 480 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 539

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           ++GV  N + + TL+ +F+R+    + ++L+  M
Sbjct: 540 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 573



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 112/231 (48%), Gaps = 8/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V YN +I  LCK+  V  A  +F  M  +   P++ T+NSLI G C  N   EA  L+
Sbjct: 476 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 535

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCL 133
            +M+  G+ ++ +T+N ++    +   M EA +L+ D++ +G       C ++ + Y  L
Sbjct: 536 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG-------CPLDDITYNGL 588

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LC+ G ++    L + +   GL PN ++ NI I+ LC    +  A +   DM  +G+
Sbjct: 589 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL 648

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            P+ V + +L+    +     + + L   +    + P A   + ++    K
Sbjct: 649 TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCK 699



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 6/198 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NT+TYNT+I    + G + +A +L   M       + +TYN LI   C A +  +   LF
Sbjct: 546 NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALF 605

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +MM +GL  + ++ N++++ LC+   +  A   L  MI  G+ PD      IV Y  LI
Sbjct: 606 EDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD------IVTYNSLI 659

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G+ + A  L   L   G+ P+ +TYN  I   C +   D AH L       G  
Sbjct: 660 NGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFI 719

Query: 195 PNCVIFTTLMPSFIRKNE 212
           PN V +  L+ +FI++ +
Sbjct: 720 PNEVTWYILVSNFIKEGD 737



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 115/273 (42%), Gaps = 61/273 (22%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN + Y T+I  L K G V++  +L  +M      P+V T+N  IHG C     +EA 
Sbjct: 266 CVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAA 325

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL---------------------- 109
            L   M+ RG   +  T+ V+M  LC+  K+DEA  LL                      
Sbjct: 326 KLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRG 385

Query: 110 ----------DLMIQGGVRPDAF-----------------------------CEINIVAY 130
                     + M+  G  PD F                             CE N++ Y
Sbjct: 386 RLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITY 445

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LID  CK G+L+ AR +   ++  GL  N V YN  I ALC DE++  A ++F DM  
Sbjct: 446 TILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSS 505

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           KG  P+   F +L+    + N+  + + L + M
Sbjct: 506 KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM 538



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 38/276 (13%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P   T+  ++  LC    VD A  L   M      PN + Y +LIH        NE   
Sbjct: 232 SPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLK 291

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+  G   DV TFN  +  LCK  ++ EA +L+D M+  G  P++F       YG 
Sbjct: 292 LLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSF------TYGV 345

Query: 133 LIDGLCKIGKLKNAREL--------------------------------SQSLTRAGLMP 160
           L+ GLC++GK+  AR L                                 +S+   G  P
Sbjct: 346 LMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGP 405

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++ TYN  I  LC    +  A +L  +M++KG  PN + +T L+  F ++    +   +L
Sbjct: 406 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 465

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
             M  + +   A   + ++  L K+E   +++  F 
Sbjct: 466 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFG 501



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + +TYN +I  LC+ G ++K   LF  M  + +NPN ++ N LI+G C   +   A 
Sbjct: 578 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHAL 637

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               +M+ RGL  D+VT+N +++ LCK  +  EA  L D +   G+ PDA      + Y 
Sbjct: 638 EFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA------ITYN 691

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
            LI   CK G   +A  L      +G +PN VT+ I +
Sbjct: 692 TLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILV 729



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 102/254 (40%), Gaps = 42/254 (16%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENI------------------------------- 47
           Y  +ID L   G       L +QMK E I                               
Sbjct: 132 YYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMR 191

Query: 48  -----NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102
                 P   +YN ++      N       +F EM+ +G+   V TF V+M  LC   ++
Sbjct: 192 GVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEV 251

Query: 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           D A  LL  M + G  P+A      + Y  LI  L K+G++    +L + +   G +P+V
Sbjct: 252 DSACALLKDMTRHGCVPNA------IVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDV 305

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            T+N  IH LC   ++ +A  L   M ++G  PN   +  LM    R  +  +   LL  
Sbjct: 306 NTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNK 365

Query: 223 MDKRNVMPYASILS 236
           +   NV+ + ++++
Sbjct: 366 VPNPNVVLFNTLIN 379



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN++I+GLCK G   +A  LF +++ E I P+ +TYN+LI   C     ++A  L
Sbjct: 650 PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL 709

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCK 98
               +D G   + VT+ +++    K
Sbjct: 710 LSRGVDSGFIPNEVTWYILVSNFIK 734



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 27/53 (50%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           P+ +TYNT+I   CKEG  D A  L  +  D    PN VT+  L+  F    D
Sbjct: 685 PDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 737



 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 36/85 (42%)

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P   +YN+ +  L          ++F +M  KG++P    F  +M +    NE      L
Sbjct: 198 PTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACAL 257

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
           L+ M +   +P A +   ++  L K
Sbjct: 258 LKDMTRHGCVPNAIVYQTLIHALSK 282


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P+  TYNT+I GLCK+G++  A+EL  +M+ +   PNV+TY  LI  FC      E
Sbjct: 383 VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEE 442

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  +  EM  +GL  + V +N ++  LCK+ K+ +A  +   M   G +PD F       
Sbjct: 443 ARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF------T 496

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LI GLCK+ K + A  L Q +   G++ N +TYN  IHA      M +A  L  DM 
Sbjct: 497 FNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDML 556

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +G   + + +  L+ +  R     K + L   M  + + P
Sbjct: 557 FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNP 597



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 117/214 (54%), Gaps = 7/214 (3%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  PN V +NT+I+G    G +D+AK +  + M      P++ TYN+LI G C       
Sbjct: 348 VPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVS 407

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  EM  +G + +V+T+ +++D  CK  +++EA  +LD M   G+       +N V 
Sbjct: 408 ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGL------ALNAVG 461

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y CLI  LCK  K+++A  +   ++  G  P++ T+N  I  LC   + ++A  L+ DM 
Sbjct: 462 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 521

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           ++GV  N + + TL+ +F+R+    + ++L+  M
Sbjct: 522 LEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 555



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V YN +I  LCK+  V  A  +F  M  +   P++ T+NSLI G C  N   EA  L+
Sbjct: 458 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 517

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M+  G+ ++ +T+N ++    +   M EA +L++ M+  G      C ++ + Y  LI
Sbjct: 518 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG------CPLDDITYNGLI 571

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC+ G ++    L + +   GL PN ++ NI I+ LC    +  A +   DM  +G+ 
Sbjct: 572 KALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLT 631

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+ V + +L+    +     + + L   +    + P A   + ++    K
Sbjct: 632 PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCK 681



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 6/198 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NT+TYNT+I    + G + +A +L   M       + +TYN LI   C A +  +   LF
Sbjct: 528 NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALF 587

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +MM +GL  + ++ N++++ LC+   +  A   L  MI  G+ PD      IV Y  LI
Sbjct: 588 EDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD------IVTYNSLI 641

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G+ + A  L   L   G+ P+ +TYN  I   C +   D AH L       G  
Sbjct: 642 NGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFI 701

Query: 195 PNCVIFTTLMPSFIRKNE 212
           PN V +  L+ +FI++ +
Sbjct: 702 PNEVTWYILVSNFIKEGD 719



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 115/273 (42%), Gaps = 61/273 (22%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN + Y T+I  L K G V++  +L  +M      P+V T+N  IHG C     +EA 
Sbjct: 248 CVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAA 307

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL---------------------- 109
            L   M+ RG   +  T+ V+M  LC+  K+DEA  LL                      
Sbjct: 308 KLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRG 367

Query: 110 ----------DLMIQGGVRPDAF-----------------------------CEINIVAY 130
                     + M+  G  PD F                             CE N++ Y
Sbjct: 368 RLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITY 427

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LID  CK G+L+ AR +   ++  GL  N V YN  I ALC DE++  A ++F DM  
Sbjct: 428 TILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSS 487

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           KG  P+   F +L+    + N+  + + L + M
Sbjct: 488 KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM 520



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 38/276 (13%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P   T+  ++  LC    VD A  L   M      PN + Y +LIH        NE   
Sbjct: 214 SPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLK 273

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM+  G   DV TFN  +  LCK  ++ EA +L+D M+  G  P++F       YG 
Sbjct: 274 LLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSF------TYGV 327

Query: 133 LIDGLCKIGKLKNAREL--------------------------------SQSLTRAGLMP 160
           L+ GLC++GK+  AR L                                 +S+   G  P
Sbjct: 328 LMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGP 387

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++ TYN  I  LC    +  A +L  +M++KG  PN + +T L+  F ++    +   +L
Sbjct: 388 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 447

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
             M  + +   A   + ++  L K+E   +++  F 
Sbjct: 448 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFG 483



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + +TYN +I  LC+ G ++K   LF  M  + +NPN ++ N LI+G C   +   A 
Sbjct: 560 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHAL 619

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               +M+ RGL  D+VT+N +++ LCK  +  EA  L D +   G+ PDA      + Y 
Sbjct: 620 EFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDA------ITYN 673

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
            LI   CK G   +A  L      +G +PN VT+ I +
Sbjct: 674 TLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILV 711



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN++I+GLCK G   +A  LF +++ E I P+ +TYN+LI   C     ++A  L
Sbjct: 632 PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL 691

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCK 98
               +D G   + VT+ +++    K
Sbjct: 692 LSRGVDSGFIPNEVTWYILVSNFIK 716



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 27/53 (50%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           P+ +TYNT+I   CKEG  D A  L  +  D    PN VT+  L+  F    D
Sbjct: 667 PDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 719



 Score = 38.9 bits (89), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 36/85 (42%)

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P   +YN+ +  L          ++F +M  KG++P    F  +M +    NE      L
Sbjct: 180 PTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACAL 239

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
           L+ M +   +P A +   ++  L K
Sbjct: 240 LKDMTRHGCVPNAIVYQTLIHALXK 264


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P  VTYN +++  C  G ++KA+ L  +M+   +NP+  +YN L+ G C  +  ++A 
Sbjct: 396 CEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKGLCKTHQLDKAF 455

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               + M+ G   D+V+ N+++D  CK +K+  A  L   M   G++ DA      V YG
Sbjct: 456 AFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQADA------VTYG 509

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+GL  +G    A EL + + +A + PNV  YNI +H LC    + +A  +FL M  K
Sbjct: 510 TLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQK 569

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + P+ V + TL+    + +   + ++L + M  + V P
Sbjct: 570 EILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEP 608



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V    +I GLCK   V++A EL  +M   NI  +V  YN+LI GF  A   ++A  
Sbjct: 327 KPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYT 386

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M   G +  VVT+N++++  C    M++A  L+  M   GV PD +      +Y  
Sbjct: 387 IISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRY------SYNQ 440

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLCK  +L  A          G   ++V+ NI I A C  +++  A +LF +M+ KG
Sbjct: 441 LLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKG 500

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V + TL+         +   EL   M K  + P  ++ +I++  L K
Sbjct: 501 MQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCK 552



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 10/233 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N  ID LCK+  +  A ++  +M+ +   P+VVTY +++   C     +EA  L
Sbjct: 258 PDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGL 317

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+  GL+ DVV    ++  LCKN K++EA  L   M+   +      E+++  Y  L
Sbjct: 318 WEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNI------ELSVSIYNAL 371

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G  + G +  A  +   +   G  P VVTYNI ++  C    M+KA +L   ME  GV
Sbjct: 372 ISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGV 431

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS--IIVDLLVK 244
            P+   +  L+    + ++  K    +   D   V  +  I+S  I++D   K
Sbjct: 432 NPDRYSYNQLLKGLCKTHQLDKAFAFVS--DHMEVGGFCDIVSCNILIDAFCK 482



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 80/147 (54%), Gaps = 6/147 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + VTY T+I+GL   G+ + A+ELF QM    I+PNV  YN ++H  C   D   A+ 
Sbjct: 502 QADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQK 561

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F+ M+ + +  D+VT+N ++  L KN +  EA  L   M   GV PD+      + +  
Sbjct: 562 IFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDS------LTFKY 615

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLM 159
           LI+GL   G+   A E+ + +   G++
Sbjct: 616 LINGLLDEGRSTLAYEVWEYMMENGII 642



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           +G REFG+        YN  I  L K    D  ++ +     + +     TY+  I   C
Sbjct: 184 SGCREFGI-------DYNRYIGVLIKNCCFDLVEKYYGMALSKGLCLTPFTYSRWISALC 236

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
            +N     E L  +M   G   D+   N+ +D LCK  ++ +A ++++ M   G  PD  
Sbjct: 237 QSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPD-- 294

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
               +V Y  ++  LC   +   A  L + + + GL P+VV     I  LC + ++++A 
Sbjct: 295 ----VVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAF 350

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +L   M    +  +  I+  L+  F R     K   ++  M      P
Sbjct: 351 ELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEP 398



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 6/194 (3%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           E    ++ + +  +   Y  L+ G+  A   +     F EM+  G +   + +N  +  L
Sbjct: 141 EFLGTVRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDYNRYIGVL 200

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            KN   D   +   + +  G+    F       Y   I  LC+  +++   EL   + R 
Sbjct: 201 IKNCCFDLVEKYYGMALSKGLCLTPF------TYSRWISALCQSNRIELVEELLADMDRF 254

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P++   NI I  LC   ++  A  +   M  KG  P+ V +TT++         S+ 
Sbjct: 255 GFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEA 314

Query: 217 IELLRSMDKRNVMP 230
           + L   M K  + P
Sbjct: 315 VGLWEEMVKMGLKP 328


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 126/237 (53%), Gaps = 13/237 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--- 68
           C P+  TYN +I+ LCK G ++ A+ L   M+  +   ++VTYN+LIHG C   +G    
Sbjct: 70  CAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRV 129

Query: 69  -EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  LF EM+D+G     VT+ V++D L + +  ++A ++LDLM + G      C  ++
Sbjct: 130 ERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENG------CAFDL 183

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI+   K G +  A +L   +   G +P+VVTYN  +   C   ++++A+ LF +
Sbjct: 184 VTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAE 243

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR---NVMPYASILSIIVDL 241
           M+ +G+ PN   +T++  + ++          L  M K    + + Y +++S I  L
Sbjct: 244 MKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYVALISTICKL 300



 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 91/170 (53%), Gaps = 7/170 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + VTYN +I+   K G +DKA +LF++M      P+VVTYNS++ GFC A    EA 
Sbjct: 179 CAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEAN 238

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM  RG+  +  T+  I D   K  +M +A   L  M + G+       ++ ++Y 
Sbjct: 239 KLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGL-------VDAISYV 291

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
            LI  +CK+GK K   +L + +   G  PN+VT+N+   AL  +   D A
Sbjct: 292 ALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDA 341



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 10/234 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   YN I+  LCK G   +A +L   M   +  P++ TYN LI+  C      +A+ L 
Sbjct: 38  NAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLV 97

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNR----KMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             M  R   +D+VT+N ++  LC+      +++ A RL + M+  G  P +      V Y
Sbjct: 98  EMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTS------VTY 151

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +ID L ++   + A+++   +   G   ++VTYN+ I+       MDKA DLF++M  
Sbjct: 152 TVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPT 211

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +G  P+ V + +++  F +  +  +  +L   M  R + P     + I D  +K
Sbjct: 212 RGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLK 265



 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
           + N   Y  ++ G C+ G+ + A  L + +  A +  N   YNI +  LC   +  +A D
Sbjct: 1   QANAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALD 60

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFI---RKNETSKVIELLRSMD 224
           L   M     AP+   +  L+ +     R  +   ++E++++ D
Sbjct: 61  LLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARD 104


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 112/219 (51%), Gaps = 7/219 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KPN  T+ T+IDGLCK+G+ +KA  LFL++ + +   PNV TY ++I+G+C  +  N AE
Sbjct: 326 KPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAE 385

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M ++GL  +  T+  ++D  CK      A  L+DLM + G  P      NI  Y 
Sbjct: 386 MLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSP------NIYTYN 439

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDGLCK G L  A  L   ++  GL  + VTY I +   C     +++   F  M   
Sbjct: 440 AIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKV 499

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G  P+   +TTL+  F R+ +  +   L        ++P
Sbjct: 500 GFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIP 538



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 6/214 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN IIDGLCK+G +D+A  L  ++    +  + VTY  L+   C   D N +   
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVF 492

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+  G   D+ ++  ++   C+ ++M E+ RL +  +  G+ P          Y  +
Sbjct: 493 FNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTK------KTYTSM 546

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G    A +L Q ++  G  P+ +TY   I  LC + ++D A +L+  M  KG+
Sbjct: 547 ICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           +P  V   TL   + +K+++S  I +L  ++KR 
Sbjct: 607 SPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQ 640



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 42/281 (14%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  T   IID  C++G+V++    F +M +  + PNV+ + +LI+G C      +A  L 
Sbjct: 258 DNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELL 317

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL-LDLMIQGGVRP---------DAFCE 124
            EM+ RG + +V T   ++D LCK    ++A RL L L+   G +P         + +C+
Sbjct: 318 EEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCK 377

Query: 125 --------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                N   Y  LIDG CK+G    A EL   + + G  PN+ T
Sbjct: 378 EDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYT 437

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I  LC    +D+A+ L   + V G+  + V +T LM    R+ +T++ +     M 
Sbjct: 438 YNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKML 497

Query: 225 KRNVMP----YASILSIIV--------DLLVKNEISLNSIP 253
           K    P    Y +++S           + L +  +SL  IP
Sbjct: 498 KVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIP 538



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T T N ++D     G V+ A+ +F++M    ++P+ V++  ++   C      EAE   
Sbjct: 188 STQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWL 247

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M++RG   D  T  +I+D  C+   ++        M++ G+ P      N++ +  LI
Sbjct: 248 NAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAP------NVINFTALI 301

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKGV 193
           +GLCK G +K A EL + + R G  PNV T+   I  LC     +KA  LFL +    G 
Sbjct: 302 NGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGY 361

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN   +T ++  + ++++ ++   LL  M ++ ++P  +  + ++D
Sbjct: 362 KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLID 408



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V++  ++   C  G V +A++    M +     +  T   +I  FC     N     
Sbjct: 222 PDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGY 281

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M++ GL  +V+ F  +++ LCK   + +A  LL+ M++ G +P      N+  +  L
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKP------NVYTHTTL 335

Query: 134 IDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           IDGLCK G  + A  L   L R+ G  PNV TY   I+  C ++++++A  L   M+ +G
Sbjct: 336 IDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQG 395

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN   +TTL+    +     +  EL+  M K    P     + I+D L K
Sbjct: 396 LVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCK 447



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 9/215 (4%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+   V   P+  +Y T+I   C++  + +++ LF +     + P   TY S+I G+C  
Sbjct: 494 NKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRY 553

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            + + A  LF  M + G   D +T+  ++  LCK  K+D+A  L D M+  G+ P   CE
Sbjct: 554 GNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSP---CE 610

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +  +    L    CK      A  +   L +      + T N  +  LC++ ++D A   
Sbjct: 611 VTRLT---LAYEYCKKDDSSTAINVLDRLEKRQW---IRTVNTLVRKLCSEGKLDMAALF 664

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           F  +  K    N V     M      N+   V EL
Sbjct: 665 FHKLLDKEPNVNRVTLLGFMNKCYESNKYGLVSEL 699



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 63  YANDGN--EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +A +G   EA  + +EM ++GL     T N ++D       ++ A  +   M Q GV PD
Sbjct: 164 FAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPD 223

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  V++  ++   C +G++  A +   ++   G + +  T  + I A C    +++
Sbjct: 224 C------VSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNR 277

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
               F  M   G+APN + FT L+    ++    +  ELL  M +R   P     + ++D
Sbjct: 278 VVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLID 337

Query: 241 LLVK 244
            L K
Sbjct: 338 GLCK 341



 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 53/109 (48%)

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           C++    + GKLK A  +   +   GL+ +  T N  +        ++ A ++F++M  +
Sbjct: 159 CMVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQR 218

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           GV+P+CV F  ++ +        +  + L +M +R  +   +  ++I+D
Sbjct: 219 GVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIID 267


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 126/232 (54%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P   T+ T+I G CK+  V+KA +L+ +M ++ I P+V T+ +LI+G C  N+  EA  
Sbjct: 460 EPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASK 519

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM++R ++   VT+NV+++  CK   MD+A  LL+ M+  G+ PD +       Y  
Sbjct: 520 LFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTY------TYRP 573

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  G++  A++    L +  L  N + Y+  +H  C   ++ +A     +M  +G
Sbjct: 574 LISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRG 633

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V    L+   +++ +  ++  LL+ M  + + P + I + ++D   K
Sbjct: 634 INMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSK 685



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 8/234 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G V  P     + ++DGL K+G +D A +L +++      PN+  YN+LI+  C   D
Sbjct: 316 ELGFV--PTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGED 373

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++AE L+  M    L  + VT+++++D  CK   +D A      MI+ G+R        
Sbjct: 374 LDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRE------T 427

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           I  Y  LI+G CK G L  A  L   +   GL P   T+   I   C D Q++KA  L+ 
Sbjct: 428 IYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYR 487

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +M  K +AP+   FT L+      NE ++  +L   M +R + P     +++++
Sbjct: 488 EMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIE 541



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N VTY+ +ID  CK G +D A+  F +M ++ I   +  YNSLI+G C   D + AE+L+
Sbjct: 392 NDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLY 451

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M++ GL+    TF  ++   CK+ ++++A +L   M +  + P  +       +  LI
Sbjct: 452 TKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVY------TFTALI 505

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLC   ++  A +L   +    + P  VTYN+ I   C    MDKA +L  DM   G+ 
Sbjct: 506 YGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLV 565

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASIL 235
           P+   +  L+         S   + +  + K+N+    M Y+++L
Sbjct: 566 PDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALL 610



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 104/188 (55%), Gaps = 7/188 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY   ++GLCK G +D+A  LF +M   NI+PN VTY   +       +  EA 
Sbjct: 704 CFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEAT 763

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +GL ++  T+N+++   CK  ++ EAT++L  M + G+ PD       + Y 
Sbjct: 764 DLHHEML-KGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDC------ITYS 816

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I   C+ G +  A EL  ++ R G+ P+ V +N+ I+  C +  +DKA +L  DM  +
Sbjct: 817 TIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSR 876

Query: 192 GVAPNCVI 199
           G+ P  ++
Sbjct: 877 GLKPRQIL 884



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++V Y ++ID   KEG   K+ E    M  E   PNVVTY + ++G C   + + A +
Sbjct: 670 RPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGH 729

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF +M+   +  + VT+   +D L K   M EAT L   M++G +        N   Y  
Sbjct: 730 LFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLL-------ANTATYNI 782

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK+G+L  A ++   +T  G+ P+ +TY+  I+  C    +  A +L+  M  KG
Sbjct: 783 LIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKG 842

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V P+ V F  L+          K  EL   M  R + P
Sbjct: 843 VEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKP 880



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T + +I  LC+     +AKE  L M+    + ++VTYN LIHG C      EA  
Sbjct: 215 KPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALE 274

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   + ++GL+ DVVT+  ++   C+ ++ D+   L++ M++ G  P         A   
Sbjct: 275 VRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTE------AAVSG 328

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DGL K G + +A +L   L R G +PN+  YN  I+ALC  E +DKA  L+ +M    
Sbjct: 329 LVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMN 388

Query: 193 VAPNCVIFTTLMPSFIRKN----ETSKVIELLRSMDKRNVMPYASIL 235
           +  N V ++ L+ SF ++       S    ++    +  + PY S++
Sbjct: 389 LPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLI 435



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 121/296 (40%), Gaps = 77/296 (26%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY- 72
           P+T TY  +I GLC  G V  AK+    +  +N+  N + Y++L+HG+C      EA   
Sbjct: 566 PDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSA 625

Query: 73  ----------------------------------LFIEMMDRGLQSD------------- 85
                                             L  +M D+GL+ D             
Sbjct: 626 SCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSK 685

Query: 86  ----------------------VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
                                 VVT+   M+ LCK  ++D A  L + M+   + P    
Sbjct: 686 EGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISP---- 741

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N V YGC +D L K G +K A +L   + + GL+ N  TYNI I   C   ++ +A  
Sbjct: 742 --NSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTATYNILIRGFCKLGRLIEATK 798

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +  +M   G+ P+C+ ++T++    R  +    +EL  +M ++ V P +   ++++
Sbjct: 799 VLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLI 854



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 4/146 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NT TYN +I G CK G + +A ++  +M +  I P+ +TY+++I+  C + D   A  L+
Sbjct: 776 NTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELW 835

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC-- 132
             M+ +G++ D V FN+++   C N  +D+A  L + M+  G++P    ++     G   
Sbjct: 836 DTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCN 895

Query: 133 -LIDGLCKIGKLKNARELSQS-LTRA 156
            L+ G C  G++  A  L  S LTRA
Sbjct: 896 FLMHGGCVTGEVDTALRLYHSMLTRA 921



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 29/239 (12%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           E FL+   +    + + ++ L+H +       +A  +   M+   L  +V T + I++ L
Sbjct: 134 EKFLESHKQCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGL 193

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAF---------CEI--------------------NI 127
            + RK      + D  +  GV+PD +         CE+                    +I
Sbjct: 194 LRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSI 253

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI GLCK G +  A E+ +SL   GL  +VVTY   +   C  +Q D    L  +
Sbjct: 254 VTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNE 313

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           M   G  P     + L+    +K       +L+  + +   +P   + + +++ L K E
Sbjct: 314 MVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGE 372



 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTY---------NSLIHGFCY 63
           +P++V +N +I G C  G +DKA EL   M    + P  +           N L+HG C 
Sbjct: 844 EPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCV 903

Query: 64  ANDGNEAEYLFIEMMDRGLQ 83
             + + A  L+  M+ R ++
Sbjct: 904 TGEVDTALRLYHSMLTRAVK 923


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T +  I GL K G V +A ++F ++K++ + P+V TY+SLI GFC   +  +A  L
Sbjct: 323 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 382

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G+  ++  +N ++D LCK+  +  A +L D M + G+ PD+      V Y  +
Sbjct: 383 HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS------VTYSTM 436

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK   +  A  L   +   G+ P+   YN  +H  C +  M+KA +LF +M  KG 
Sbjct: 437 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 496

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           A   + F TL+  + +  +  +  +L + M  + +MP     + ++D   K
Sbjct: 497 ATT-LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCK 546



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 9/224 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E G+V  P+  TY+++I G CK+G V+KA EL  +M  + I PN+  YN+L+ G C + 
Sbjct: 352 KEKGLV--PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 409

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D   A  LF  M ++GL+ D VT++ ++D  CK+  + EA  L   M   GV+P +F   
Sbjct: 410 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSF--- 466

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               Y  L+ G CK G ++ A  L + + + G     +++N  I   C   ++ +A  LF
Sbjct: 467 ---VYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLF 522

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            +M  K + P+ V +TT++    +  +  +   L + M +RN++
Sbjct: 523 QEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLI 566



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 123/248 (49%), Gaps = 6/248 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN+ T+  +I+G C+E  + +A EL  +M+  N+ P+ V+Y ++I+G C+  D + A 
Sbjct: 111 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 170

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M   GL+ +VV ++ ++       +++EA RLLD M   GV PD FC      Y 
Sbjct: 171 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFC------YN 224

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  L K GK++ A      +   GL P+ VT+   I       +M +A   F +M   
Sbjct: 225 AIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDH 284

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ PN  ++T L+    +     + + + R +    V+P     S  +  L+KN     +
Sbjct: 285 GLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEA 344

Query: 252 IPQFNRQK 259
           +  F+  K
Sbjct: 345 LKVFSELK 352



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 125/244 (51%), Gaps = 24/244 (9%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P++VTY+T+IDG CK   V +A  LF +M  + + P+   YN+L+HG C   D  +A  
Sbjct: 427 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 486

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +G  +  ++FN ++D  CK+ K+ EA++L   MI   + PD       V Y  
Sbjct: 487 LFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDH------VTYTT 539

Query: 133 LIDGLCKIGKLKNAR-----------------ELSQSLTRAGLMPNVVTYNITIHALCND 175
           +ID  CK GK++ A                   L + +   G+ P+ VTY + I+A C +
Sbjct: 540 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKE 599

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
           + + +A  L  ++  KG+     I   L+ +  ++ + ++  +LL  M +  + P  +  
Sbjct: 600 DNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAAC 659

Query: 236 SIIV 239
           S +V
Sbjct: 660 STLV 663



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VT+   I G  K G + +A + F +M D  + PN   Y  LI+G   A +  EA  
Sbjct: 252 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 311

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  +   G+  DV T +  +  L KN ++ EA ++   + + G+ PD F       Y  
Sbjct: 312 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVF------TYSS 365

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK G+++ A EL   +   G+ PN+  YN  +  LC    + +A  LF  M  KG
Sbjct: 366 LISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 425

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + P+ V ++T++  + +    ++   L   M  + V P++ + + +V
Sbjct: 426 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 472



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 29/263 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V Y+T+I G   EG +++A+ L   M    + P++  YN++I     A    EA  
Sbjct: 182 KPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAST 241

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----------AF 122
             +E+  RGL+ D VTF   +    K  KM EA +  D M+  G+ P+           F
Sbjct: 242 YLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHF 301

Query: 123 CEINIV----------AYGCL---------IDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
              N++          A G L         I GL K G+++ A ++   L   GL+P+V 
Sbjct: 302 KAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVF 361

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY+  I   C   +++KA +L  +M +KG+APN  I+  L+    +  +  +  +L   M
Sbjct: 362 TYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM 421

Query: 224 DKRNVMPYASILSIIVDLLVKNE 246
            ++ + P +   S ++D   K+E
Sbjct: 422 PEKGLEPDSVTYSTMIDGYCKSE 444



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N +TYN +I GLCK G ++KA E+   M      PN  T+  LI G+C  ++   A  L 
Sbjct: 79  NLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELL 138

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  R L    V++  +++ LC  + +  A +LL+ M   G++P      N+V Y  LI
Sbjct: 139 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKP------NVVVYSTLI 192

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G    G+++ AR L   ++ +G+ P++  YN  I  L    +M++A    L+++ +G+ 
Sbjct: 193 MGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 252

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           P+ V F   +  + +  + ++  +    M    +MP   + +++++
Sbjct: 253 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLIN 298



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 14/231 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT TY  I  GLC+   +++AK  F +M+   + P+    ++LI GF    D +E   +
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--FCEINIVAYG 131
              M+  G+  +++T+NV++  LCK  KM++A  +L  MI  G +P++  FC        
Sbjct: 68  KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFC-------- 119

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G C+   +  A EL   + +  L+P+ V+Y   I+ LC+ + +  A+ L   M   
Sbjct: 120 LLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFS 179

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           G+ PN V+++TL+  +  +    +   LL  M    V P    Y +I+S +
Sbjct: 180 GLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 230



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+    + +IDG  +EG +D+   +   M    I  N++TYN LIHG C      +A  
Sbjct: 42  KPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAE 101

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M+  G + +  TF ++++  C+   M  A  LLD M +  + P A      V+YG 
Sbjct: 102 ILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA------VSYGA 155

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLC    L  A +L + +T +GL PNVV Y+  I    ++ ++++A  L   M   G
Sbjct: 156 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSG 215

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           VAP+   +  ++    +  +  +    L  +  R + P A      +
Sbjct: 216 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 262



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M ++ + PN  TY  +  G C A   NEA+  F EM   GL+ D    + ++D   +   
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +DE  R+ D+M+  G+       IN++ Y  LI GLCK GK++ A E+ + +   G  PN
Sbjct: 61  IDEVLRIKDVMVSCGI------PINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
             T+ + I   C +  M +A +L  +ME + + P+ V +  ++       + S   +LL 
Sbjct: 115 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 174

Query: 222 SMDKRNVMPYASILSIIV 239
            M    + P   + S ++
Sbjct: 175 KMTFSGLKPNVVVYSTLI 192



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 27/212 (12%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            T+++NT+IDG CK   + +A +LF +M  + I P+ VTY ++I   C A    EA  LF
Sbjct: 498 TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLF 557

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM +R L  D V                    L + M+  GV+PD       V YG +I
Sbjct: 558 KEMQERNLIVDTV------------------FALFEKMVAKGVKPDE------VTYGLVI 593

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              CK   L  A +L   +   G++     +++ I ALC  E + +A  L  +M   G+ 
Sbjct: 594 YAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLK 653

Query: 195 PNCVIFTTLMPSFI---RKNETSKVIELLRSM 223
           P+    +TL+ SF    + +E ++V E ++S+
Sbjct: 654 PSLAACSTLVRSFHEAGKMDEATRVFEGVKSL 685



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 8/120 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT----YNSLIHGFCYANDGN 68
           KP+ VTY  +I   CKE   D   E F +++DE +   ++T    ++ LI   C   D  
Sbjct: 583 KPDEVTYGLVIYAHCKE---DNLVEAF-KLRDEVVGKGMLTKGTIHDLLITALCKREDLT 638

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  L  EM + GL+  +   + ++    +  KMDEATR+ + +   G+ PD    I++V
Sbjct: 639 EASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLV 698


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 124/236 (52%), Gaps = 7/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C P+ V+Y T++  LCKE  +++ K L  +M +D N+ P+ VTYN+LIH        ++A
Sbjct: 332 CPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDA 391

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                E  D+G   D V ++ I+   C+  +MDEA  L+  M      PD      +V Y
Sbjct: 392 LAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPD------VVTY 445

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++DG C++G++  A+++ Q + + G  PN V+Y   ++ LC+  +  +A ++    E 
Sbjct: 446 TAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEE 505

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               PN + +  +M  F R+ + S+  +L R M ++   P    +++++  L +N+
Sbjct: 506 HWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQ 561



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 9/212 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+I  L K G  D A     + +D+  + + V Y++++H FC     +EA+ L
Sbjct: 370 PDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSL 429

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            I+M  R    DVVT+  I+D  C+  ++DEA ++L  M + G +P      N V+Y  L
Sbjct: 430 VIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKP------NTVSYTAL 483

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLC  GK   ARE+          PN +TY + +H    + ++ +A DL  +M  KG 
Sbjct: 484 LNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGF 543

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            P  V    L+ S     +  KV+E  + +++
Sbjct: 544 FPTPVEINLLIQSLC---QNQKVVEAKKYLEE 572



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 124/231 (53%), Gaps = 8/231 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTV+Y  +++GLC  G   +A+E+    ++    PN +TY  ++HGF      +EA 
Sbjct: 473 CKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEAC 532

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+++G     V  N+++  LC+N+K+ EA + L+  +  G      C IN+V + 
Sbjct: 533 DLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKG------CAINVVNFT 586

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G C+IG ++ A  + + +  +   P+ VTY     AL    ++D+A +L + M  K
Sbjct: 587 TVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSK 646

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G+ P  V F +++  + +      ++ LL  M KR   P+ +I + +++ L
Sbjct: 647 GLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKRK--PFRTIYNHVIEKL 695



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 7/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN    NT I  L K   ++KA     +M+   I P++VTYNSLI G+C  N   +A  
Sbjct: 263 EPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALE 322

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYG 131
           L   +  +G   D V++  +M  LCK +K+++   L++ M+Q   + PD       V Y 
Sbjct: 323 LIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQ------VTYN 376

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  L K G   +A    +     G   + V Y+  +H+ C   +MD+A  L +DM  +
Sbjct: 377 TLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSR 436

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
              P+ V +T ++  F R     +  ++L+ M K    P     + +++ L  +  SL +
Sbjct: 437 SCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEA 496

Query: 252 IPQFN 256
               N
Sbjct: 497 REMIN 501



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 74  FIEMMDRGLQ--SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           F    DR  +     + +  ++D L K +    A R+L LM + G+      E++  A+G
Sbjct: 182 FFYWADRQWRYSHHPLVYYTLLDVLSKTKLCQGARRVLRLMTRRGI------ELSPEAFG 235

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           C++    + GKL+NA  +   + +AG+ PN+   N TI+ L    +++KA      M+V 
Sbjct: 236 CVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVT 295

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P+ V + +L+  +   N     +EL+  +  +   P
Sbjct: 296 GIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPP 334



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N V + T+I G C+ G ++ A  +   M   N +P+ VTY +L          +EA 
Sbjct: 578 CAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAA 637

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L ++M+ +GL    VTF  ++   C+  ++D+   LLD M    V+   F  I    Y 
Sbjct: 638 ELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRM----VKRKPFRTI----YN 689

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG 157
            +I+ LC  G L+ A +L   + R  
Sbjct: 690 HVIEKLCDFGNLEEAEKLLGKVLRTA 715



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 105/273 (38%), Gaps = 44/273 (16%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
            +R++     P  + Y T++D L K      A+ +   M    I  +   +  ++  +  
Sbjct: 186 ADRQWRYSHHP--LVYYTLLDVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSR 243

Query: 64  ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
           A     A  +   M   G++ ++   N  +  L K  K+++A R L+ M   G++PD   
Sbjct: 244 AGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPD--- 300

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG-------------------------- 157
              IV Y  LI G C + ++++A EL   L   G                          
Sbjct: 301 ---IVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKC 357

Query: 158 ----------LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
                     L+P+ VTYN  IH L      D A     + E KG   + V ++ ++ SF
Sbjct: 358 LMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSF 417

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +K    +   L+  M  R+  P     + IVD
Sbjct: 418 CQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVD 450


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +TYNT+I G CKEG V +  EL  +M  + I P++ T+N L+HG C A+  +EA  L+ E
Sbjct: 537 ITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHE 596

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
               G   +V T+ V++D  CK  K++E   LL+ ++   +      E+N V Y  LI  
Sbjct: 597 CKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKL------ELNSVVYNSLIRA 650

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            C  G +  A  L   +   G++ +  TY+  +H LCN   +D A  L  +M  +G+ PN
Sbjct: 651 YCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPN 710

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V +TT++  + +  + +KV  +L+ M   N+ P     +I++D   K
Sbjct: 711 VVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCK 758



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G V  PN V YNT+IDG CK G + +A ++   M  + I+PN VT NSLI GFC ++ 
Sbjct: 354 ELGFV--PNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQ 411

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +AE +  EM+ RGL  +  +F+++++ LC   +   A   +  M+   +RP      N
Sbjct: 412 IGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRP------N 465

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
                 L+ GLCK GK   A EL   L   G +PN+VT N  IH LC    M +   L  
Sbjct: 466 DGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLR 525

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           DM  +G+  + + + TL+    ++ +  +  EL   M K+ + P
Sbjct: 526 DMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQP 569



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+N ++ GLC    +D+A  L+ + K     PNV TY  +I G+C AN   E E 
Sbjct: 568 QPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGEN 627

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  E++ + L+ + V +N ++   C N  M+ A RL D M   GV       ++   Y  
Sbjct: 628 LLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVL------LSCATYSS 681

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLC IG + +A+ L   + + GL+PNVV Y   I       QM+K + +  +M    
Sbjct: 682 LMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHN 741

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + PN   +T ++  F +  +T +  +LL  M ++ ++P A   +   + L K
Sbjct: 742 IHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCK 793



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN     T++ GLCK G   +A EL+ ++  +   PN+VT N+LIHG C A +  E   
Sbjct: 463 RPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLK 522

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M++RGL  D +T+N ++   CK  K+ E   L + M++ G++PD      I  +  
Sbjct: 523 LLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPD------IYTFNL 576

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLC   K+  A  L     + G +PNV TY + I   C   ++++  +L  ++  K 
Sbjct: 577 LLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKK 636

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM----PYASIL 235
           +  N V++ +L+ ++      +    L   M  R V+     Y+S++
Sbjct: 637 LELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLM 683



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   ++T+I+  CK    D A  LF +M+   + PNVVTYN++IHG C +   +EA   
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRF 313

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+   +   ++T++V ++ L K  K+DEA  +L  M + G  P      N V Y  L
Sbjct: 314 KEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVP------NEVVYNTL 367

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK+G +  A ++   +   G+ PN VT N  I   C  +Q+ +A ++  +M  +G+
Sbjct: 368 IDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGL 427

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             N   F+ ++     K      +  +R M  RN+ P   +L+ +V  L K
Sbjct: 428 PINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCK 478



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 29/220 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +IDG CK   V++ + L  ++  + +  N V YNSLI  +C   + N A  L
Sbjct: 604 PNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRL 663

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M  RG+     T++ +M  LC    +D+A  LLD M + G+ P+  C          
Sbjct: 664 RDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSK 723

Query: 124 -----EINIV--------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                ++NIV               Y  +IDG CK+GK K A +L   +T  G++P+ VT
Sbjct: 724 LGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVT 783

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
           YN   + LC + ++++A  +  +M    V  + + +TTL+
Sbjct: 784 YNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLI 823



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN II GLCK G +D+A     +M  E ++P+++TY+  I+G       +EA  +
Sbjct: 289 PNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCV 348

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + G   + V +N ++D  CK   + EA ++ D M+  G+ P      N V    L
Sbjct: 349 LKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISP------NSVTLNSL 402

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK  ++  A  + + +   GL  N  ++++ I+ LC   +   A     +M ++ +
Sbjct: 403 IQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNL 462

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN  + TTL+    +  +  + +EL   +  +  +P
Sbjct: 463 RPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVP 499



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T   ++  L K   + K+ E++  +    I P+V  ++++I+ FC  +  ++A  L
Sbjct: 219 PSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGL 278

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M   G+  +VVT+N I+  LCK+ ++DEA R  + M++  V P      +++ Y   
Sbjct: 279 FSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP------SLITYSVF 332

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GL K+ K+  A  + + ++  G +PN V YN  I   C    + +A  +  DM  KG+
Sbjct: 333 INGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGI 392

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +PN V   +L+  F + ++  +   +L  M  R +       S++++ L
Sbjct: 393 SPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWL 441



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 109/212 (51%), Gaps = 6/212 (2%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A ++F  +  + + P++ T   L+     AN+  ++  ++  +   G+  DV  F+ +++
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             CK  + D+A  L   M + GV P      N+V Y  +I GLCK G+L  A    + + 
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAP------NVVTYNNIIHGLCKSGRLDEAYRFKEKMV 318

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           +  + P+++TY++ I+ L   E++D+A+ +  +M   G  PN V++ TL+  + +    S
Sbjct: 319 KEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNIS 378

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           + +++   M  + + P +  L+ ++    K++
Sbjct: 379 EALKIRDDMLSKGISPNSVTLNSLIQGFCKSD 410



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 64/123 (52%), Gaps = 6/123 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y TII G  K G ++K   +  +M   NI+PN  TY  +I GFC      EA  L
Sbjct: 709 PNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKL 768

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM ++G+  D VT+N   + LCK  K++EA ++ D M  G V  D       + Y  L
Sbjct: 769 LNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDE------ITYTTL 822

Query: 134 IDG 136
           IDG
Sbjct: 823 IDG 825


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 41/283 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY  +ID LC  G ++ AKELFL+MK  +  P+ VTY +L+  F    D +  +
Sbjct: 293 CGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIK 352

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             + EM   G   DVVTF +++D LCK  K+DEA   LD+M + GV P      N+  Y 
Sbjct: 353 EFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAP------NLHTYN 406

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGL--------------------------------- 158
            LI GL ++ +L  A EL  S+   GL                                 
Sbjct: 407 TLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTN 466

Query: 159 --MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
             +PN+V  N ++++L    ++++A + F  ++  G+AP+ + +  LM  + +       
Sbjct: 467 GIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDA 526

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           I+LL  M++    P   I++ ++D L K +    +   F R K
Sbjct: 527 IKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMK 569



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 6/193 (3%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            CKPNT+T+N +I GL K   +DKA +L+  +   + +P   TY  LI G        EA+
Sbjct: 854  CKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAK 913

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
              F EM+D G   +   +N++M+   K   ++ A  L   M++ G+RPD      + +Y 
Sbjct: 914  QFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPD------LKSYS 967

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             ++D LC +GK+ +A    + L  +GL P++V YN+ I+ L   +++++A  LF +M  +
Sbjct: 968  IMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNR 1027

Query: 192  GVAPNCVIFTTLM 204
            G+ P+   +  L+
Sbjct: 1028 GITPDLYTYNALI 1040



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 128/289 (44%), Gaps = 43/289 (14%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ G V   N  +Y  +I  L K GF  +A +++ +M  E I P++ TY++L+       
Sbjct: 184 RKVGFVL--NGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRR 241

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D      L  EM   GL+ ++ TF + +  L +  K+DEA  +L  M   G  PD     
Sbjct: 242 DIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPD----- 296

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRA----------------------------- 156
            +V Y  LID LC  GKL NA+EL   +  +                             
Sbjct: 297 -VVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFW 355

Query: 157 ------GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                 G +P+VVT+ I I ALC   ++D+A      M+ +GVAPN   + TL+   +R 
Sbjct: 356 SEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRL 415

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           N   + +EL  SM+   +   A    + +D   K+  S  +I  F + K
Sbjct: 416 NRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMK 464



 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 6/192 (3%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C PN   YN +++G  K+G V+ A ELF +M  E I P++ +Y+ ++   C     ++A 
Sbjct: 924  CMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDAL 983

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            + F E+   GL  D+V +N++++ L ++++++EA  L D M   G+ PD +       Y 
Sbjct: 984  HYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLY------TYN 1037

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             LI  L   G ++ A ++ + L   GL PNV TYN  I         D+A+ ++  M V 
Sbjct: 1038 ALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVG 1097

Query: 192  GVAPNCVIFTTL 203
            G  PN   F  L
Sbjct: 1098 GCRPNTGTFAQL 1109



 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 6/183 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN++IDGL K    + A  LF +MK+    P+V TYN  +     +    E   L
Sbjct: 786 PSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDL 845

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM+ RG + + +T N+++  L K+  +D+A  L   ++ G   P  +       YG L
Sbjct: 846 YEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPW------TYGPL 899

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGL K+G+L+ A++  + +   G MPN   YNI ++       ++ A +LF  M  +G+
Sbjct: 900 IDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGI 959

Query: 194 APN 196
            P+
Sbjct: 960 RPD 962



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 114/239 (47%), Gaps = 15/239 (6%)

Query: 12   CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
            C P+  TYN  +D L K G + +  +L+ +M      PN +T+N +I G   +N  ++A 
Sbjct: 819  CTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAI 878

Query: 72   YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             L+ ++M         T+  ++D L K  +++EA +  + M+  G  P      N   Y 
Sbjct: 879  DLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMP------NCPLYN 932

Query: 132  CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             L++G  K G ++ A EL + + + G+ P++ +Y+I +  LC   ++D A   F ++++ 
Sbjct: 933  ILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLS 992

Query: 192  GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250
            G+ P+ V +  ++    R     + + L   M  R + P         DL   N + LN
Sbjct: 993  GLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITP---------DLYTYNALILN 1042



 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 102/191 (53%), Gaps = 6/191 (3%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P   TY  +IDGL K G +++AK+ F +M D    PN   YN L++GF    D   A  L
Sbjct: 891  PTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACEL 950

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            F  M+  G++ D+ ++++++D LC   K+D+A    + +   G+ PD  C      Y  +
Sbjct: 951  FRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVC------YNLM 1004

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            I+GL +  +++ A  L   +   G+ P++ TYN  I  L     +++A  ++ ++++KG+
Sbjct: 1005 INGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGL 1064

Query: 194  APNCVIFTTLM 204
             PN   +  L+
Sbjct: 1065 EPNVFTYNALI 1075



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 8/233 (3%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNE 69
           +C+ ++V    ++  LCK G    A  +FL++ K   I P++  YNSLI G   A     
Sbjct: 748 ICEDDSVLI-PLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEM 806

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  LF +M + G   DV T+N+ +D L K+ K+ E   L + M+  G +P      N + 
Sbjct: 807 AWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKP------NTIT 860

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  +I GL K   L  A +L   L      P   TY   I  L    ++++A   F +M 
Sbjct: 861 HNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEML 920

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             G  PNC ++  LM  F ++ +     EL R M K  + P     SI+VD L
Sbjct: 921 DYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCL 973



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 9/207 (4%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           NG ++ G+   P+ +TYN ++    K G VD A +L  +M++   +P VV  NSLI    
Sbjct: 496 NGLKKCGLA--PDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLY 553

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
            A+  +EA  +F  M +  L   VVT+N ++  L K  ++ EAT L   MI         
Sbjct: 554 KADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADD------ 607

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
           C  N +++  L+D LCK G++  A ++   +T     P+V+TYN  I+ L  + +++ A 
Sbjct: 608 CPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAF 667

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            LF  M+ K + P+ V   TL+P  I+
Sbjct: 668 WLFHQMK-KVIYPDYVTLCTLLPGVIK 693



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 110/225 (48%), Gaps = 6/225 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V  N  +  L ++G +++AKE F  +K   + P+ +TYN L+  +  A   ++A  L
Sbjct: 470 PNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKL 529

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + G   +VV  N ++D L K  ++DEA ++   M +  + P       +V Y  L
Sbjct: 530 LSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAP------TVVTYNTL 583

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GL K G+++ A  L + +      PN +++N  +  LC + ++D A  +   M     
Sbjct: 584 LAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNC 643

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            P+ + + T++   I++N  +    L   M K     Y ++ +++
Sbjct: 644 FPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTLL 688



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 75  IEMM--DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR--PDAFCE------ 124
           +EM+   R ++  VV FN++  ++ K       T    L I+GG+R  P A  +      
Sbjct: 129 LEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGF 188

Query: 125 -INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            +N  +Y  LI  L K G  + A ++ + +   G+ P++ TY+  + AL     ++    
Sbjct: 189 VLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMG 248

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           L  +ME  G+ PN   FT  +    R  +  +   +L+ MD     P     ++++D L
Sbjct: 249 LLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDAL 307


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 103/191 (53%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  + + P+++TYN+L++G C   D N+A  L
Sbjct: 234 PNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGL 293

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D  T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 294 IDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDD------VAYTAL 347

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 348 ISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 407

Query: 194 APNCVIFTTLM 204
            P  V +  LM
Sbjct: 408 VPXVVTYNVLM 418



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 121/222 (54%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A  +F  +    + P+VV+YN+L++G+    D +E   L   M 
Sbjct: 134 FNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMR 193

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK   MD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 194 ASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVP------NXVTFTTLIDGHC 247

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  ++ LC    +++AH L  +M  KG+ P+  
Sbjct: 248 KNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKF 307

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 308 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALIS 349



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 126/240 (52%), Gaps = 8/240 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + +  R  GV  +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G
Sbjct: 188 LKSAMRASGV--QPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDG 245

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     + A  ++ +M+ + L  D++T+N ++  LCK   +++A  L+D M   G++PD
Sbjct: 246 HCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPD 305

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            F       Y  LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   
Sbjct: 306 KF------TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXD 359

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  +  +M   G+ P+   +T ++  F +K +  K  +LL+ M +   +P     +++++
Sbjct: 360 AEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMN 419



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M+   + P+V TY+ LI+G C  +  ++A  
Sbjct: 163 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANE 222

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      J+ Y  
Sbjct: 223 LFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPD------JITYNT 276

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLCK G L  A  L   +   GL P+  TY   I   C +  +D A +    M  + 
Sbjct: 277 LVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQEN 336

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 337 IRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 389



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 118 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRP------SVVSYNT 171

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC +  MD A++LF +M VKG
Sbjct: 172 LMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKG 231

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  + ++P
Sbjct: 232 LVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLP 269



 Score = 44.3 bits (103), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+T TY  II+  CK+G V K  +L  +M+     P VVTYN L++G
Sbjct: 373 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMNG 420



 Score = 42.0 bits (97), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 102 VLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWG 161

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 162 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCK 213


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 125/222 (56%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 141 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 200

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 201 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVTFTTLIDGHC 254

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AH L  +M +KG+ P+ +
Sbjct: 255 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKI 314

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 315 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALIS 356



 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ +M  +++ P+++TYN+LI+G C   D  +A +L
Sbjct: 241 PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHL 300

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A      MIQ  +  D       VAY  L
Sbjct: 301 IDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDD------VAYTAL 354

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL PN  TY + I+  C    + K   L  +M+  G 
Sbjct: 355 ISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 414

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 415 VPSVVTYNVLM 425



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 205 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 264

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 265 IYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDK------ITYTT 318

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 319 LIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 378

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 379 LKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 416



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 170 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 229

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 230 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPD------LITYNT 283

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 284 LIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN 343

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 344 IXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKK 396



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  +++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 125 FYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 178

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 179 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 238

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 239 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLP 276



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KPN  TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 380 KPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 109 VLEHLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 168

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 169 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 220


>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
          Length = 642

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 31/250 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+ TYN I+ GLCKEG    A+ +   ++   ++P+VVTY SL+H +C   +   A  +
Sbjct: 349 PNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRI 408

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFCEINIVAYGC 132
             EM  +G   +  T+NV++  L +  +  EA RLL+ M + G   D A C I       
Sbjct: 409 LDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGYSLDTAGCNI------- 461

Query: 133 LIDGLCKIGKLKNA--------RELSQSLTRAG---------------LMPNVVTYNITI 169
           +IDGLC+  KL  A         E S +L R G                +P+ +TY+I I
Sbjct: 462 IIDGLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILI 521

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
            ALC + + D+A    L+M VK ++P+ VI+ T +  + +  +TS  I++LR M+K+   
Sbjct: 522 SALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCN 581

Query: 230 PYASILSIIV 239
           P     ++++
Sbjct: 582 PSTRTYNLLI 591



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 35/266 (13%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V  NT++ G CKEG V++A+ L  +M+ + + PNVVT+NS I   C A    +A  +F
Sbjct: 206 NLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIF 265

Query: 75  IEMMD---RGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG-------------- 116
            +M +    GL + D VTF+V++   C    +DEA  L+D+M  GG              
Sbjct: 266 KDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSG 325

Query: 117 -------------VRPDAFCEI--NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-P 160
                        +R  A   I  N   Y  ++ GLCK GK  +AR + ++  R+G+M P
Sbjct: 326 LVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRV-ENFIRSGVMSP 384

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +VVTY   +HA C+   +  A+ +  +M  KG APN   +  L+ S  R   T++   LL
Sbjct: 385 DVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLL 444

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNE 246
             M ++      +  +II+D L +N 
Sbjct: 445 ERMSEKGYSLDTAGCNIIIDGLCRNS 470



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 106/257 (41%), Gaps = 52/257 (20%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           V  P+ VTY +++   C +G +  A  +  +M  +   PN  TYN L+     A    EA
Sbjct: 381 VMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEA 440

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR------------ 118
           E L   M ++G   D    N+I+D LC+N K+D A  ++D M + G              
Sbjct: 441 ERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSV 500

Query: 119 -----------PD---------AFCE--------------------INIVAYGCLIDGLC 138
                      PD         A C+                     + V Y   I G C
Sbjct: 501 VSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYC 560

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GK   A ++ + + + G  P+  TYN+ I       + D+   L  +ME KGV+PN +
Sbjct: 561 KHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVL 620

Query: 199 IFTTLMPSFIRKNETSK 215
            + +L+ SF ++   ++
Sbjct: 621 TYNSLIKSFCQQGMLTR 637



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 109/278 (39%), Gaps = 53/278 (19%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R       P T  YN +I    +E  +D  + L+  +      P+V T N L+   C A 
Sbjct: 100 RALASAPPPPTPVYNRLILTALRESRLDLVEALYKDLLLAGAQPDVFTRNLLLRALCDAG 159

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A+ +F  M  R    +  +F ++    C+  +  +A ++LD M            +
Sbjct: 160 RMELAQRVFEAMPVR----NEFSFGILARGYCRAGRSVDALKVLDGMPS----------M 205

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+V    ++ G CK G ++ A  L + +   GL PNVVT+N  I ALC   ++  A+ +F
Sbjct: 206 NLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIF 265

Query: 186 LDME---VKGVA-PNCVIFTTLMPSF---------------------------------- 207
            DM+     G+  P+ V F  ++  F                                  
Sbjct: 266 KDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSG 325

Query: 208 -IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +R     +  ELLR M    + P +   +IIV  L K
Sbjct: 326 LVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCK 363


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 126/265 (47%), Gaps = 31/265 (11%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  PN VTYN +I GLC+EG  D   +L  +M+ +  +P+  TY  ++HG C      
Sbjct: 226 GVV--PNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVG 283

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--------- 119
               +  E + +G+  +V+T+N +++  CK   M  A  +L LM +  V P         
Sbjct: 284 HGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVI 343

Query: 120 DAFC--------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
             FC                      N V +  LI G C +G+ K A  L   +   G++
Sbjct: 344 HGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVL 403

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+  TY I I ALC++ Q+++AH LF  + +KG+  + VI+T+L+  + +  +      L
Sbjct: 404 PDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGL 463

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
           +  M   N MP     + ++D L K
Sbjct: 464 MEKMASENCMPDVHTYNTLIDGLCK 488



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P   TY  ++DGLCK   V +A+ L  +M ++ + PNVVTYN+LI G C     ++  
Sbjct: 192 CRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVT 251

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M  +    D  T+  ++  LCK+ K+    ++L   I  GV       + ++ Y 
Sbjct: 252 KLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGV------ALEVLTYN 305

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G CK G +K A ++ Q + R  + P V T+N  IH  C   ++ KA      M   
Sbjct: 306 ALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGA 365

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G++PN V F +L+       E    + LL  M++  V+P     +I +D L
Sbjct: 366 GLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDAL 416



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 6/241 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           +TYN +I+G CK G +  A ++   MK   +NP V T+N +IHGFC     ++A     +
Sbjct: 302 LTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQ 361

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   GL  + VTFN ++   C   +   A RLLDLM + GV PD         Y   ID 
Sbjct: 362 MAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDR------QTYAIFIDA 415

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LC  G+L+ A  L   L   G+  + V Y   +H  C    +D A  L   M  +   P+
Sbjct: 416 LCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPD 475

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
              + TL+    +     + I+LL  M K+ + P     +I++  ++ ++   ++   + 
Sbjct: 476 VHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYE 535

Query: 257 R 257
           +
Sbjct: 536 Q 536



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 11/227 (4%)

Query: 7   EFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
            FG + K    PN  TYNT+I+  CK   +  A+   ++M++  + P+  TYN L+ G C
Sbjct: 77  SFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLC 136

Query: 63  YANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            A     A  LF++M  R G   D  ++ +++  LC   ++D+A R+   M +G  RP  
Sbjct: 137 RAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRP-- 194

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                +  Y  L+DGLCK+ ++  A  L   +   G++PNVVTYN  I  LC + + D  
Sbjct: 195 ----GVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDV 250

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             L   ME++  +P+C  +T ++    +  +     ++L     + V
Sbjct: 251 TKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGV 297



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+GV+  P+  TY   ID LC EG +++A  LF  +  + I  + V Y SL+HG+C   D
Sbjct: 399 EYGVL--PDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGD 456

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A  L  +M       DV T+N ++D LCK +++D A  LLD M + G+ P   C  N
Sbjct: 457 IDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTT-CTFN 515

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI-----HALCNDEQMDKA 181
           I+    L D      K  +A ++ + +  +G  P+  TY + I          +E +D A
Sbjct: 516 ILIKQMLWD-----KKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMA 570

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
               ++M   GV P+   +  ++ +++      K       M    + P  +  SI+++ 
Sbjct: 571 ---VVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNY 627

Query: 242 LVKNEIS 248
           +   + S
Sbjct: 628 MCNKDDS 634



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 7/208 (3%)

Query: 39  FLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
           F  M      PN  TYN+LI+  C      +A    + M + GL  D  T+N +M  LC+
Sbjct: 78  FGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCR 137

Query: 99  NRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
              +  A  L   M +  G   D +      +Y  LI GLC  G++ +A  +   ++R  
Sbjct: 138 AGLLAAACGLFVQMPRRWGACYDRY------SYTILIKGLCAAGRIDDACRVFAKMSRGW 191

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
             P V TY + +  LC   ++ +A  L  +M  KGV PN V +  L+    ++     V 
Sbjct: 192 CRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVT 251

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +LL  M+ +   P     + +V  L K+
Sbjct: 252 KLLEKMEIQRHSPDCWTYTQVVHGLCKH 279



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 26/254 (10%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
            E GV   P+  TYN II      G  +KA    ++M    I+P+  TY+ L++  C  +
Sbjct: 575 HEAGVF--PDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKD 632

Query: 66  DG----NEAEY----------LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL 111
           D     NE  +          LF +M +      + T+  ++  LC   +++E   LL  
Sbjct: 633 DSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLK 692

Query: 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           M    +  D   +++    GC     C +   + A E  +S+      P + +  + +  
Sbjct: 693 MQGNSILLDE--DMSDYLLGCY----CNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSG 746

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP- 230
           LC+      A  +F DM   G   + V++  L+     K      +E+L  MD +  +  
Sbjct: 747 LCDSGDHGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMDAKKCVAS 806

Query: 231 ---YASILSIIVDL 241
              YAS++ ++ +L
Sbjct: 807 TRTYASLVRLVAEL 820



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 3/162 (1%)

Query: 84  SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143
           SDV + N  +  +  + +   A RL  L+   G    +    N   Y  LI+  CK+  L
Sbjct: 49  SDVRSHNAAL--IAYSSRGSRAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALL 106

Query: 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTT 202
            +AR     +  AGL P+  TYN  +  LC    +  A  LF+ M  + G   +   +T 
Sbjct: 107 ADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTI 166

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           L+              +   M +    P     ++++D L K
Sbjct: 167 LIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCK 208


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V++NT+I G+C+ G +D A+ L  +M +  + P+V TY +LI G C      +A  +F +
Sbjct: 152 VSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEK 211

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M  RG++ + V F +++D  CK    +    L   M + GVRPDA      V Y  +++G
Sbjct: 212 MCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDA------VTYNAIVNG 265

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LC+   LK+A  +   +  AGL P+ VTY   I   C +E++D A ++  +M  +GV  +
Sbjct: 266 LCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLD 325

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            V +T L+    +   ++    +L  M +  + P  +  ++++D   + 
Sbjct: 326 EVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRK 374



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V +  +ID  CK+G  +   EL  +M++  + P+ VTYN++++G C A D   A  
Sbjct: 218 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 277

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           + +EM   GL+ D VT+  ++D  CK  ++D A  +   M+  GV  D       V Y  
Sbjct: 278 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDE------VTYTA 331

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GL K G+  +A  +   +  AGL P+  TY + I A C    +     L  +M+ KG
Sbjct: 332 LISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKG 391

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             P  V +  +M  F +  +      LL +M    V P     +I++D
Sbjct: 392 RKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLD 439



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 108/201 (53%), Gaps = 9/201 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TVTY T+IDG CKE  +D A E+   M  E +  + VTY +LI G   A    +AE 
Sbjct: 288 RPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAER 347

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EMM+ GL+ D  T+ +++D  C+   +    RLL  M   G +P       +V Y  
Sbjct: 348 VLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKP------GVVTYNV 401

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++G CK+G++KNA  L  ++   G+ P+ +TYNI +   C   ++    +L      KG
Sbjct: 402 IMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL---KSAKG 458

Query: 193 VAPNCVIFTTLMPSFIRKNET 213
             P+  ++T+++   ++K  T
Sbjct: 459 TVPDLGVYTSIVGEIVKKKTT 479



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV   P+  TY  +I GLC+ G ++ A+ +F +M    + PN V +  LI   C   D
Sbjct: 179 EAGVT--PDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGD 236

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
                 L  EM +RG++ D VT+N I++ LC+ R +  A+ ++  M   G+RPD      
Sbjct: 237 AETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDT----- 291

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  LIDG CK  +L  A E+ Q++   G+  + VTY   I  L    +   A  +  
Sbjct: 292 -VTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLG 350

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +M   G+ P+   +T ++ +F RK +    + LL+ M  +   P     ++I++   K
Sbjct: 351 EMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCK 408



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N ++  L + G +  A+ +F +M+   +   VV++N++I G C A D + AE L
Sbjct: 114 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 173

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M + G+  DV T+  ++  LC+  ++++A  + + M   G++P+A      V +  L
Sbjct: 174 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNA------VVFTIL 227

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  CK G  +   EL + +   G+ P+ VTYN  ++ LC    +  A  + ++M   G+
Sbjct: 228 IDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGL 287

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+ V +TTL+  + ++ E    +E+ ++M
Sbjct: 288 RPDTVTYTTLIDGYCKEEELDMAMEIKQNM 317



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 6/213 (2%)

Query: 34  KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           +A   +LQ+ D  + P    +N L+       +   A+ +F EM  RG++  VV+FN ++
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 158

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
             +C+   +D A  L   M + GV PD +       YG LI GLC++G++++AR + + +
Sbjct: 159 SGMCRAGDLDGAETLHRRMSEAGVTPDVY------TYGALIQGLCRVGRIEDARGVFEKM 212

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              G+ PN V + I I A C     +   +L  +M  +GV P+ V +  ++    R  + 
Sbjct: 213 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 272

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
                ++  M    + P     + ++D   K E
Sbjct: 273 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE 305


>gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana]
          Length = 766

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +IDG C+   ++ AKE+  +MK++ I PNVVT N+++ G C  +  N A 
Sbjct: 402 CVPNAVTYNCLIDGYCRAVKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAV 461

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
             F++M   G++ +VVT+  ++   C    +++A    + M++ G  PDA        Y 
Sbjct: 462 VFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDA------KIYY 515

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLC++ +  +A  + + L   G   +++ YN+ I   C+    +K +++  DME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G  P+ + + TL+  F +  +   V  ++  M +  + P  +    ++D
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVID 624



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 13/242 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDG 67
           G V K +++ +NT+IDGLCK G + +A+EL ++MK +E   PN VTYN LI G+C A   
Sbjct: 363 GNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAVKL 422

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A+ +   M +  ++ +VVT N I+  +C++  ++ A      M + GV+       N+
Sbjct: 423 ETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKG------NV 476

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD---L 184
           V Y  LI   C +  ++ A    + +  AG  P+   Y   I  LC   Q+ + HD   +
Sbjct: 477 VTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLC---QVRRDHDAIRV 533

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              ++  G + + + +  L+  F  KN   KV E+L  M+K    P +   + ++    K
Sbjct: 534 VEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGK 593

Query: 245 NE 246
           ++
Sbjct: 594 HK 595



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y  +I GLC+      A  +  ++K+   + +++ YN LI  FC  N+  +  
Sbjct: 507 CSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVY 566

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M   G + D +T+N ++    K++  +   R+++ M + G+ P       +  YG
Sbjct: 567 EMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDP------TVTTYG 620

Query: 132 CLIDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            +ID  C +G+L  A +L + +   + + PN V YNI I+A        +A  L  +M++
Sbjct: 621 AVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           K V PN   +  L      K +   +++L+  M +++  P    + I+++ L
Sbjct: 681 KMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERL 732



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 16/222 (7%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN------INPNVVTYNSLIHGFCY 63
           V  +P+ VT   +I+ L K   VD+A E+F QM+ +       I  + + +N+LI G C 
Sbjct: 323 VKIRPDVVTLGILINTLSKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCK 382

Query: 64  ANDGNEAEYLFIEM-MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                EAE L + M ++     + VT+N ++D  C+  K++ A  ++  M +  ++P   
Sbjct: 383 VGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAVKLETAKEVVSRMKEDEIKP--- 439

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+V    ++ G+C+   L  A      + + G+  NVVTY   IHA C+   ++KA 
Sbjct: 440 ---NVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAM 496

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFI---RKNETSKVIELLR 221
             +  M   G +P+  I+  L+       R ++  +V+E L+
Sbjct: 497 YWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLK 538



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 110/232 (47%), Gaps = 15/232 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+V     I  LCK    + A ++   +           +N+L+       D +    L
Sbjct: 257 PNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDL 316

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--FCEINIVAYG 131
            ++M +  ++ DVVT  ++++ L K+R++DEA  + + M   G R D     + + + + 
Sbjct: 317 VLKMDEVKIRPDVVTLGILINTLSKSRRVDEALEVFEQM--RGKRTDDGNVIKADSIHFN 374

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGL----MPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            LIDGLCK+G+LK A EL   L R  L    +PN VTYN  I   C   +++ A ++   
Sbjct: 375 TLIDGLCKVGRLKEAEEL---LVRMKLEERCVPNAVTYNCLIDGYCRAVKLETAKEVVSR 431

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASIL 235
           M+   + PN V   T++    R +  +  +     M+K     NV+ Y +++
Sbjct: 432 MKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLI 483



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 7/206 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           + YN +I   C +   +K  E+   M+ E   P+ +TYN+LI  F    D    E +  +
Sbjct: 547 LAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQ 606

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLID 135
           M + GL   V T+  ++D  C   ++DEA +L  D+ +   V P      N V Y  LI+
Sbjct: 607 MREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNP------NTVIYNILIN 660

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
              K+G    A  L + +    + PNV TYN     L    Q +    L  +M  +   P
Sbjct: 661 AFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEP 720

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLR 221
           N +    LM      +E  K+ + ++
Sbjct: 721 NQITMEILMERLSGSDELVKLRKFMQ 746



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+++TYNT+I    K    +  + +  QM+++ ++P V TY ++I  +C   + +EA  
Sbjct: 578 KPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALK 637

Query: 73  LFIEMMDRGLQSDV----VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           LF +M   GL S V    V +N++++   K     +A  L + M    VRP      N+ 
Sbjct: 638 LFKDM---GLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRP------NVE 688

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            Y  L   L +  + +   +L   +      PN +T  I +  L   +++ K
Sbjct: 689 TYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVK 740



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 6/214 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           DK   L+   K++NI   VV    LI  F      N++  L  E +D  +++  V  NV+
Sbjct: 134 DKLLRLYEIAKEKNIPLTVVATKLLIRWFGRMGMVNQS-VLVYERLDSNMKNSQVR-NVV 191

Query: 93  MDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +D L +N  +D+A ++LD M+Q   V P      +IV +      L    K+     L  
Sbjct: 192 VDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKGRLLTEEKII---ALIS 248

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
             +  G+ PN V     I +LC + + + A D+  D+           F  L+    R  
Sbjct: 249 RFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNM 308

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + S++ +L+  MD+  + P    L I+++ L K+
Sbjct: 309 DISRMNDLVLKMDEVKIRPDVVTLGILINTLSKS 342



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTV YN +I+   K G   +A  L  +MK + + PNV TYN+L         G     L
Sbjct: 650 PNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKL 709

Query: 74  FIEMMDRGLQSDVVTFNVIM------DELCKNRK 101
             EM+++  + + +T  ++M      DEL K RK
Sbjct: 710 MDEMVEQSCEPNQITMEILMERLSGSDELVKLRK 743


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GLQ D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 305 IDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 419 VPSVVTYNVLM 429



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  N  ++A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANK 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ + L  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P A   ++I++   K 
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A +LF +M  + + PN VT+ +LI G C     + A  
Sbjct: 209 QPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDK------ITYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I G  + GF+  A E +   ++  +     T   ++              
Sbjct: 69  RSDIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A+ LF +M VK 
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKA 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 280



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 43.5 bits (101), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 172

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 12/228 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA------ND 66
           +PN+ T+  II+GLC  G V++A+E F  +K E++  +V  Y +L++G+C A      ++
Sbjct: 502 EPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHE 561

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA  L   M++  ++   V ++ I   LC N  M+ A  L +L I  G  PDA     
Sbjct: 562 LKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDA----- 616

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  +I+G CK   L  A EL + +   G+ P+ VTY I I+  C    + +AH+LF 
Sbjct: 617 -VTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFK 675

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
           DM+ +G+ P+ + +T ++   +    T    +L   M    + P A++
Sbjct: 676 DMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGMTPGATL 723



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 12/237 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V YN +  G  +     +A +L   M+ + + PN  T+  +I G C A    EAE 
Sbjct: 467 KPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEAEE 526

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELC------KNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            F  +    ++  V  +  +++  C      K+ ++ EA  LL  M++  ++P       
Sbjct: 527 FFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSK----- 581

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  +   LC  G ++ A  L       G  P+ VTY I I+  C    + +AH+LF 
Sbjct: 582 -VMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFK 640

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           DM+ +G+ P+ V +T ++  + + N   +  EL + M +R + P     ++I+  L+
Sbjct: 641 DMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLL 697



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 120/258 (46%), Gaps = 35/258 (13%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            YN + D LCK G VD A  +  ++K   ++ ++  Y +LI+G+       EA+ LF EM
Sbjct: 402 AYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEM 461

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------FC----- 123
            +RG + DVV +NV+     +NR   EA  LL+ M   GV P++          C     
Sbjct: 462 EERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKV 521

Query: 124 ---------------EINIVAYGCLIDGLCKIGKLKNARELSQ------SLTRAGLMPNV 162
                          EI++  Y  L++G C+   ++ + EL +      ++    + P+ 
Sbjct: 522 EEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSK 581

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V Y+    ALC +  M+ AH LF      G  P+ V +T ++  + + N   +  EL + 
Sbjct: 582 VMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKD 641

Query: 223 MDKRNVMPYASILSIIVD 240
           M +R + P A   +I+++
Sbjct: 642 MKERGITPDAVTYTIMIN 659



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            Y  +I G C E  +D+A+ +FL+M+ + + P+V  Y +L+HG+C + + ++A  ++  M
Sbjct: 297 AYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSM 356

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           + RG++++ V F+ I+   C    +DE  R L+++       ++   I+  AY  L D L
Sbjct: 357 ISRGIKTNCVIFSCILH--C----LDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDAL 410

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK+GK+ +A  +   L    L  ++  Y   I+      +  +A  LF +ME +G  P+ 
Sbjct: 411 CKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDV 470

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           V +  L   F R     + ++LL  M+ + V P ++   II++ L
Sbjct: 471 VAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGL 515



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 6/235 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           VV  PN +++N +I+ L K   VD A  LF++ K   +  N  TY  +I   C   D   
Sbjct: 184 VVILPNILSFNFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKALCKKGDWEN 243

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
              +F EM + G+  D   +   ++ LCKN + D    +L    Q     +A   ++  A
Sbjct: 244 VVRVFDEMKEAGVDDDSYCYATFIEGLCKNNRSDLGYAVL----QDYRTRNA--HVHKYA 297

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I G C   KL  A  +   + + GL+P+V  Y   +H  CN    DKA  ++  M 
Sbjct: 298 YTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMI 357

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +G+  NCVIF+ ++          +V+++     +  +       +I+ D L K
Sbjct: 358 SRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCK 412



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 6/229 (2%)

Query: 31  FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFN 90
           FV+    L    K+  I PN++++N LI+     ++ + A  LF+     GL  +  T+ 
Sbjct: 170 FVEAIDFLLQTRKNVVILPNILSFNFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYT 229

Query: 91  VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150
           +++  LCK    +   R+ D M + GV  D++C      Y   I+GLCK  +      + 
Sbjct: 230 IVIKALCKKGDWENVVRVFDEMKEAGVDDDSYC------YATFIEGLCKNNRSDLGYAVL 283

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           Q         +   Y   I   CN+ ++D+A  +FL+ME +G+ P+  ++  L+  +   
Sbjct: 284 QDYRTRNAHVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNS 343

Query: 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
               K + + +SM  R +     I S I+  L +   +L  +  F   K
Sbjct: 344 RNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFK 392



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 20/225 (8%)

Query: 35  AKELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           A   F Q+K+++  + N+ TY S+I   CY N   + + LF++++D   Q      NV+ 
Sbjct: 78  AYSYFTQLKNQHGFSHNIQTYTSIIRILCYYNLDRKLDSLFLDIIDHSKQDPCFEINVLF 137

Query: 94  DELCKN-RKMDEATRLLDL---MIQGGVRPDAFCEI---------------NIVAYGCLI 134
           D L +    ++E   L +     ++  V  + F E                NI+++  LI
Sbjct: 138 DSLFEGVNDVNEDHYLFNAFNGFVKACVSQNMFVEAIDFLLQTRKNVVILPNILSFNFLI 197

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           + L K  ++  A  L       GL+ N  TY I I ALC     +    +F +M+  GV 
Sbjct: 198 NRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKALCKKGDWENVVRVFDEMKEAGVD 257

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +   + T +    + N +     +L+    RN   +    + ++
Sbjct: 258 DDSYCYATFIEGLCKNNRSDLGYAVLQDYRTRNAHVHKYAYTAVI 302


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN++I G C+EG + +A  LF ++      PN VTY +LI G+C  ND  EA  L
Sbjct: 265 PDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRL 322

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   GL   VVT+N I+ +LC+  K+ +A RLL+ M +  V PD       V    L
Sbjct: 323 REVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDN------VTCNTL 376

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CKIG + +A ++ + +  AGL P+  T+   IH  C   ++D A +   +M   G 
Sbjct: 377 INAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGF 436

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+   ++ L+ S+  ++    VI L   + ++ +    S+   ++  L K
Sbjct: 437 SPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCK 487



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 55/294 (18%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+IDG C+   +++A  L   M+ E ++P VVTYNS++   C      +A  L
Sbjct: 298 PNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRL 357

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +R ++ D VT N +++  CK   M  A ++   M++ G++PD F       +  L
Sbjct: 358 LNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQF------TFKAL 411

Query: 134 IDGLCKIGKLKNARE-----------------------------------LSQSLTRAGL 158
           I G CK+ ++ +A+E                                   L   L+R GL
Sbjct: 412 IHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGL 471

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
             ++  Y   I  LC  ++++ A  +F  M+ KG+  + V++T+L  ++ +  +     +
Sbjct: 472 FVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASD 531

Query: 219 LLRSMDKRNVM-----------PYA---SILSIIVDLLVKNEISLNSIPQFNRQ 258
           +L  MDKR +M            YA   SIL +  D +++  +   +I ++ +Q
Sbjct: 532 MLDEMDKRRLMITLKIYRCFSASYAGDGSILGLFWDHVIERRLISKNILKYIQQ 585



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 14/224 (6%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  PN   +N +I   CK G V+KA++L  +M+   I P++ TYN+LI  +C    G 
Sbjct: 192 GVV--PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYC--KKGM 247

Query: 69  EAEYLFIE-MMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             E L I+  M+R G+  D+VT+N ++   C+  +M EA RL   +   G  P      N
Sbjct: 248 HYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATP------N 299

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  LIDG C++  L+ A  L + +   GL P VVTYN  +  LC + ++  A+ L  
Sbjct: 300 HVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLN 359

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +M  + V P+ V   TL+ ++ +  +    +++ + M +  + P
Sbjct: 360 EMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKP 403



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 8/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+      +++ L K    +   +++ +M    + PN+  +N LIH  C + D  +AE 
Sbjct: 159 KPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQ 218

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  R +  D+ T+N ++   CK     EA  + D M +GGV PD      IV Y  
Sbjct: 219 LLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPD------IVTYNS 272

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C+ G+++ A  L + +   G  PN VTY   I   C    +++A  L   MEV+G
Sbjct: 273 LIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEG 330

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P  V + +++     + +      LL  M +R V P
Sbjct: 331 LHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEP 368



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A ++F  M+     P++     L++    A   N    ++ +M+  G+  ++  FNV++ 
Sbjct: 146 AIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 205

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             CK+  +++A +LL+ M    + PD F       Y  LI   CK G    A  +   + 
Sbjct: 206 ACCKSGDVEKAEQLLNEMESRFIFPDLF------TYNTLISLYCKKGMHYEALGIQDRME 259

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           R G+ P++VTYN  I+  C + +M +A  LF   E+ G  PN V +TTL+  + R N+  
Sbjct: 260 RGGVSPDIVTYNSLIYGFCREGRMREALRLF--REINGATPNHVTYTTLIDGYCRVNDLE 317

Query: 215 KVIELLRSMDKRNVMP----YASIL 235
           + + L   M+   + P    Y SIL
Sbjct: 318 EALRLREVMEVEGLHPGVVTYNSIL 342


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 126/222 (56%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 186

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 187 ANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIP------NGVTFTTLIDGHC 240

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC +  + +AHDL  +M +KG+ P+  
Sbjct: 241 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKF 300

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     +  + M + N+    + Y +++S
Sbjct: 301 TYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALIS 342



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 107/191 (56%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ +M  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 227 PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDL 286

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D  T+  ++D  CK   +D A +    MIQ  +R D       VAY  L
Sbjct: 287 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDD------VAYTAL 340

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P++ TY + I+  C    + K   L  +M+  G 
Sbjct: 341 ISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 400

Query: 194 APNCVIFTTLM 204
           AP+ V +  LM
Sbjct: 401 APSVVTYNVLM 411



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAME 250

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M+ + L  D++T+N ++  LCKN  + +A  L+D M   G++PD F       Y  
Sbjct: 251 IYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKF------TYTT 304

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A +  + + +  +  + V Y   I  LC + Q   A  +  +M   G
Sbjct: 305 LIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVG 364

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +    P
Sbjct: 365 LKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAP 402



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 156 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANE 215

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 216 LFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPD------LITYNT 269

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+  TY   I   C +  +D A      M  + 
Sbjct: 270 LIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQEN 329

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++ ++    ++LR M    + P     ++I++   K 
Sbjct: 330 IRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKK 382



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 114/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   ++  +     T   ++              
Sbjct: 51  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWG 110

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 111 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 164

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++   G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 165 LMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 224

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + PN V FTTL+    +       +E+ + M  ++++P     + ++  L KN
Sbjct: 225 LIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKN 277



 Score = 43.5 bits (101), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+     P+VVTYN L++G
Sbjct: 366 KPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 125/268 (46%), Gaps = 31/268 (11%)

Query: 6    REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
            R  G++  P+ +TYN++++G CK G + +A  LF  ++   + P V+TYN LI G+C   
Sbjct: 1252 RAMGLL--PDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLG 1309

Query: 66   DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-- 123
            D  EA  L  EM ++G   +V T+ ++M      R +  A    D M+  G++PD F   
Sbjct: 1310 DLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYN 1369

Query: 124  ---------------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                                         + V Y  LI GLCK G LK+A+EL   +   
Sbjct: 1370 TRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSN 1429

Query: 157  GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
            GL P+ +TY   IHA C    + +A  +F +M   G+ P+ V FT ++ ++ R+      
Sbjct: 1430 GLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSA 1489

Query: 217  IELLRSMDKRNVMPYASILSIIVDLLVK 244
                R M +  V P     ++++  L +
Sbjct: 1490 YGWFRKMLEEGVEPNEITYNVLIHALCR 1517



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 6/207 (2%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            K ++ TYN +I GL   G V K  +L L+M++E I P VVTYN++IHG   +     A+ 
Sbjct: 1187 KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQV 1246

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             F EM   GL  DV+T+N +++  CK   + EA  L   + + G+ P       ++ Y  
Sbjct: 1247 KFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAP------TVLTYNI 1300

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            LIDG C++G L+ AR L + +   G +PNV TY I +    N   +  A + F +M  KG
Sbjct: 1301 LIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKG 1360

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIEL 219
            + P+C  + T + + +   + ++  EL
Sbjct: 1361 LQPDCFAYNTRICAELILGDIARAFEL 1387



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 118/262 (45%), Gaps = 41/262 (15%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P  +TYN +IDG C+ G +++A+ L  +M ++   PNV TY  L+ G         A   
Sbjct: 1293 PTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREF 1352

Query: 74   FIEMMDRGLQ-----------------------------------SDVVTFNVIMDELCK 98
            F EM+ +GLQ                                   SD VT+N+++  LCK
Sbjct: 1353 FDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCK 1412

Query: 99   NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
               + +A  L   M+  G++PD       + Y CLI   C+ G L+ AR++  ++   GL
Sbjct: 1413 TGNLKDAKELQMKMVSNGLQPDC------ITYTCLIHAHCERGLLREARKIFNNMISDGL 1466

Query: 159  MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            +P+ VT+ + IHA C    +  A+  F  M  +GV PN + +  L+ +  R   T     
Sbjct: 1467 LPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASH 1526

Query: 219  LLRSMDKRNVMPYASILSIIVD 240
                M +R ++      ++++D
Sbjct: 1527 HFHEMLERGLVANKYTYTLLID 1548



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 6/193 (3%)

Query: 15   NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            +TVTYN +I GLCK G +  AKEL ++M    + P+ +TY  LIH  C      EA  +F
Sbjct: 1399 DTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIF 1458

Query: 75   IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
              M+  GL    VTF VI+   C+   +  A      M++ GV P      N + Y  LI
Sbjct: 1459 NNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP------NEITYNVLI 1512

Query: 135  DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              LC++G+ + A      +   GL+ N  TY + I   C     + A   + +M   G+ 
Sbjct: 1513 HALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIH 1572

Query: 195  PNCVIFTTLMPSF 207
            P+ +    L+  F
Sbjct: 1573 PDYLTHKALLKGF 1585



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 12/221 (5%)

Query: 13   KPNTVTYNTIIDGLCKE---GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
            +P+   YNT I   C E   G + +A EL   +  E I+ + VTYN LIHG C   +  +
Sbjct: 1362 QPDCFAYNTRI---CAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKD 1418

Query: 70   AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            A+ L ++M+  GLQ D +T+  ++   C+   + EA ++ + MI  G+ P A      V 
Sbjct: 1419 AKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSA------VT 1472

Query: 130  YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            +  +I   C+ G L +A    + +   G+ PN +TYN+ IHALC   +   A   F +M 
Sbjct: 1473 FTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEML 1532

Query: 190  VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             +G+  N   +T L+    +       +     M +  + P
Sbjct: 1533 ERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHP 1573



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 11/235 (4%)

Query: 7    EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYA 64
            E G+  +P+ VTYNT++D   KEG  DK   L  +M+       PN VTYN +I G    
Sbjct: 1112 ELGI--EPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRK 1169

Query: 65   NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
             D  EA  L +E M    ++   T+N ++  L     + +   L   M   G+ P     
Sbjct: 1170 GDLEEAAEL-VEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMP----- 1223

Query: 125  INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
              +V Y  +I GL + G ++ A+     +   GL+P+V+TYN  ++  C    + +A  L
Sbjct: 1224 -TVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLL 1282

Query: 185  FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            F D+   G+AP  + +  L+  + R  +  +   L   M ++  +P     +I++
Sbjct: 1283 FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILM 1337



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 11/203 (5%)

Query: 41   QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG---LQSDVVTFNVIMDELC 97
            +M +  I P++VTYN+L+  F      ++   L  EM  RG   L +DV T+NV++  L 
Sbjct: 1109 EMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDV-TYNVVITGLT 1167

Query: 98   KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
            +   ++EA  L++     G+R     + +   Y  LI GL   G +K   +L   +   G
Sbjct: 1168 RKGDLEEAAELVE-----GMRLSK--KASSFTYNPLITGLLARGCVKKVYDLQLEMENEG 1220

Query: 158  LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
            +MP VVTYN  IH L     ++ A   F +M   G+ P+ + + +L+  + +     + +
Sbjct: 1221 IMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEAL 1280

Query: 218  ELLRSMDKRNVMPYASILSIIVD 240
             L   + +  + P     +I++D
Sbjct: 1281 LLFGDLRRAGLAPTVLTYNILID 1303



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+ VT+  II   C+ G +  A   F +M +E + PN +TYN LIH  C       A + 
Sbjct: 1468 PSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHH 1527

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            F EM++RGL ++  T+ +++D  CK    ++A R    M Q G+ PD
Sbjct: 1528 FHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPD 1574



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            +PN +TYN +I  LC+ G    A   F +M +  +  N  TY  LI G C   +  +A  
Sbjct: 1502 EPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMR 1561

Query: 73   LFIEMMDRGLQSDVVTFNVIM 93
             + EM   G+  D +T   ++
Sbjct: 1562 FYFEMHQNGIHPDYLTHKALL 1582


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN++I G C+EG + +A  LF ++      PN VTY +LI G+C  ND  EA  L
Sbjct: 265 PDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRL 322

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   GL   VVT+N I+ +LC+  K+ +A RLL+ M +  V PD       V    L
Sbjct: 323 REVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDN------VTCNTL 376

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CKIG + +A ++ + +  AGL P+  T+   IH  C   ++D A +   +M   G 
Sbjct: 377 INAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGF 436

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+   ++ L+ S+  ++    VI L   + ++ +    S+   ++  L K
Sbjct: 437 SPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCK 487



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 55/294 (18%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+IDG C+   +++A  L   M+ E ++P VVTYNS++   C      +A  L
Sbjct: 298 PNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRL 357

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +R ++ D VT N +++  CK   M  A ++   M++ G++PD F       +  L
Sbjct: 358 LNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQF------TFKAL 411

Query: 134 IDGLCKIGKLKNARE-----------------------------------LSQSLTRAGL 158
           I G CK+ ++ +A+E                                   L   L+R GL
Sbjct: 412 IHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGL 471

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
             ++  Y   I  LC  ++++ A  +F  M+ KG+  + V++T+L  ++ +  +     +
Sbjct: 472 FVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASD 531

Query: 219 LLRSMDKRNVM-----------PYA---SILSIIVDLLVKNEISLNSIPQFNRQ 258
           +L  MDKR +M            YA   SIL +  D +++  +   +I ++ +Q
Sbjct: 532 MLDEMDKRRLMITLKIYRCFSASYAGDGSILGLFWDHVIERRLISKNILKYIQQ 585



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 14/224 (6%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  PN   +N +I   CK G V+KA++L  +M+   I P++ TYN+LI  +C    G 
Sbjct: 192 GVV--PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYC--KKGM 247

Query: 69  EAEYLFIE-MMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             E L I+  M+R G+  D+VT+N ++   C+  +M EA RL   +   G  P      N
Sbjct: 248 HYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATP------N 299

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  LIDG C++  L+ A  L + +   GL P VVTYN  +  LC + ++  A+ L  
Sbjct: 300 HVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLN 359

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +M  + V P+ V   TL+ ++ +  +    +++ + M +  + P
Sbjct: 360 EMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKP 403



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 8/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+      +++ L K    +   +++ +M    + PN+  +N LIH  C + D  +AE 
Sbjct: 159 KPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQ 218

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  R +  D+ T+N ++   CK     EA  + D M +GGV PD      IV Y  
Sbjct: 219 LLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPD------IVTYNS 272

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C+ G+++ A  L + +   G  PN VTY   I   C    +++A  L   MEV+G
Sbjct: 273 LIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEG 330

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P  V + +++     + +      LL  M +R V P
Sbjct: 331 LHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEP 368



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A ++F  M+     P++     L++    A   N    ++ +M+  G+  ++  FNV++ 
Sbjct: 146 AIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 205

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             CK+  +++A +LL+ M    + PD F       Y  LI   CK G    A  +   + 
Sbjct: 206 ACCKSGDVEKAEQLLNEMESRFIFPDLF------TYNTLISLYCKKGMHYEALGIQDRME 259

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           R G+ P++VTYN  I+  C + +M +A  LF   E+ G  PN V +TTL+  + R N+  
Sbjct: 260 RGGVSPDIVTYNSLIYGFCREGRMREALRLF--REINGATPNHVTYTTLIDGYCRVNDLE 317

Query: 215 KVIELLRSMDKRNVMP----YASIL 235
           + + L   M+   + P    Y SIL
Sbjct: 318 EALRLREVMEVEGLHPGVVTYNSIL 342


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD A  L D M+  G+ P      N V +  LIDG C
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVP------NGVTFTTLIDGHC 239

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AHDL  +M +KG+ P+  
Sbjct: 240 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 299

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 300 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 341



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 285

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D  T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 286 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYTAL 339

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + ++  C    + K   L  +M+  G 
Sbjct: 340 ISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGH 399

Query: 194 APNCVIFTTLM 204
           AP+ V +  LM
Sbjct: 400 APSVVTYNVLM 410



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A  LF +M  + + PN VT+ +LI G C     + A  
Sbjct: 190 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD F       Y  
Sbjct: 250 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF------TYTT 303

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 304 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 363

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +    P
Sbjct: 364 LKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAP 401



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  + A  
Sbjct: 155 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANG 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 215 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD------LITYNT 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+  TY   I   C +  +D A +    M  + 
Sbjct: 269 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQEN 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++IV+   K 
Sbjct: 329 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKK 381



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 163

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A+ LF +M VKG
Sbjct: 164 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKG 223

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 224 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 261



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+T TY  I++  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 365 KPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 14/205 (6%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMD--EATRLL 109
           +Y ++IH  C     +EA+ L   ++ R G  S    F  ++ E   N++ D    + L+
Sbjct: 2   SYCTMIHFLCTHQXLSEAKSLIEVVVSRKGKGSASAVFAAVL-ETXGNQRSDIYVFSGLI 60

Query: 110 DLMIQGGVRPDAF-C-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLM 159
              ++ G   DA  C       ++ +    C  +++ L K+   K      + +   G  
Sbjct: 61  TAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYP 120

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
            ++  +NI +H  C D  +  A  +F  +   G+ P+ V + TLM  +IR  +  +   L
Sbjct: 121 ASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRL 180

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
             +M    V P     S++++ L K
Sbjct: 181 KSAMLASGVQPDVYTYSVLINGLCK 205


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 119/210 (56%), Gaps = 6/210 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+ N+L++G+    D +E   L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVML 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A    D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVP------NGVTFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A+E+ + +    L+P+++TYN  I+ LC    + +AHDL  DM +KG+ P+ +
Sbjct: 259 KNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKI 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +TTL+    ++ +     E  + M + N+
Sbjct: 319 TYTTLIBGCCKEGDLDSAFEHRKRMIQENI 348



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD AKE++ QM  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M  +GL+ D +T+  ++B  CK   +D A      MIQ  +R D       V Y  L
Sbjct: 305 IDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDD------VVYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +    L P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 APNCVIFTTLM 204
           AP+ V +  LM
Sbjct: 419 APSVVTYNVLM 429



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A E F +M  + + PN VT+ +LI G C     + A+ 
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKE 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDK------ITYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIBG CK G L +A E  + + +  +  + V Y   I  LC + +   A  +  +M    
Sbjct: 323 LIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVR 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +    P
Sbjct: 383 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAP 420



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+ NT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 174 RPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 XFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V++T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 348 IRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKK 400



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+   
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSXNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L   +  +G+ P+V TY++ I+ LC + +MD A++ F +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +        E+ + M  ++++P
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLP 280



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           V  KP+T TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 381 VRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 12/204 (5%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRK-MDEATRLLD 110
           +Y ++IH  C     +EA+ L   ++ R G  S    F  I++     R  +   + L+ 
Sbjct: 21  SYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASXVFAAILETKGTQRSDIYVFSGLIT 80

Query: 111 LMIQGGVRPDAF-C-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMP 160
             ++ G   DA  C       ++ +    C  +++ L K+   K      + +   G   
Sbjct: 81  AYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPA 140

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++  +NI +H  C D  +  A  +F  +   G+ P+ V   TLM  +IR  +  +   L 
Sbjct: 141 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLK 200

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
             M    V P     S++++ L K
Sbjct: 201 SVMLASGVQPDVYTYSVLINGLCK 224


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 132/260 (50%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT T+  +I G+CK G ++ A+ L  +M+ + ++ NVV +N+++ G+C     +EA  L
Sbjct: 320 PNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAFRL 379

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-----AFCEI--- 125
              M  +G ++DV T+N++   LCK  + +EA R+L++M++ GV P+      F EI   
Sbjct: 380 QDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQ 439

Query: 126 ---------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                NIV Y  LID   K  K+K A  L   +   GL+P+V T
Sbjct: 440 EGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFT 499

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   IH  C  +++D+A  LF +M VKG+  N   +T ++    ++    + ++L   M 
Sbjct: 500 YTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMM 559

Query: 225 KRNVMPYASILSIIVDLLVK 244
           +  ++P   +   +V  L K
Sbjct: 560 RMGLIPDDRVFEALVGSLHK 579



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 6/212 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y ++I   C+ G V +A  LF +M    I PN  T+ +LI G C A     AE L  EM 
Sbjct: 290 YTSMISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQ 349

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
            +G+  +VV FN +MD  CK   MDEA RL D+M + G   D F       Y  L  GLC
Sbjct: 350 CKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVF------TYNILASGLC 403

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K+ + + A+ +   +   G+ PNVVT    I   C +  + +      ++E +GV PN V
Sbjct: 404 KLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIV 463

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + TL+ ++ +  +  +   L   M ++ ++P
Sbjct: 464 TYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLP 495



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 8/238 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV   + VTY  +I+       + +A++++ +M + N+  +V  Y S+I   C A +  
Sbjct: 247 GVV--ASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNVR 304

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  LF EM+ RG+  +  TF  ++  +CK  +M+ A  LL+ M   GV      ++N+V
Sbjct: 305 RASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGV------DLNVV 358

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  ++DG CK G +  A  L   + R G   +V TYNI    LC   + ++A  +   M
Sbjct: 359 IFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVM 418

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             KGVAPN V   T +  + ++   ++    LR+++KR V+P     + ++D   KNE
Sbjct: 419 VEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNE 476



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 8/207 (3%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR- 80
           ++D LC+ G V +AKEL  +M    + P V TYN+L++  C      E     + +M+R 
Sbjct: 188 VVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNA-CVVRKDREGVDEILGLMERE 246

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G+ + +VT+ ++++    + ++ EA ++ + M +  V      E+++  Y  +I   C+ 
Sbjct: 247 GVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNV------EMDVYVYTSMISWNCRA 300

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G ++ A  L   +   G++PN  T+   I  +C   QM+ A  L  +M+ KGV  N VIF
Sbjct: 301 GNVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIF 360

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRN 227
            T+M  + ++    +   L   M+++ 
Sbjct: 361 NTMMDGYCKRGMMDEAFRLQDIMERKG 387



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 2/112 (1%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  PN VTYNT+ID   K   V +A  L  +M ++ + P+V TY SLIHG C  +  +
Sbjct: 457 GVV--PNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVD 514

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           EA  LF EM+ +G++ +V T+  I+  L K  + DEA +L D M++ G+ PD
Sbjct: 515 EALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMMRMGLIPD 566



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 10/173 (5%)

Query: 62  CYANDGNEAEY---LFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           C+    N+ E     F  M++ G +   V +  +++D LC+  ++  A  L++ M   GV
Sbjct: 154 CFXKKCNKVELCVRFFRRMVESGRVDIGVQSLTIVVDVLCRRGEVGRAKELMNEMAARGV 213

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
            P  F       Y  L++        +   E+   + R G++ ++VTY I I    + E+
Sbjct: 214 VPTVF------TYNTLLNACVVRKDREGVDEILGLMEREGVVASLVTYTILIEWYASSER 267

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + +A  ++ +M  + V  +  ++T+++    R     +   L   M  R ++P
Sbjct: 268 IGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMICRGIVP 320



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  K++   R    M++ G R D    I + +   ++D LC+ G++  A+EL   +   G
Sbjct: 158 KCNKVELCVRFFRRMVESG-RVD----IGVQSLTIVVDVLCRRGEVGRAKELMNEMAARG 212

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           ++P V TYN  ++A    +  +   ++   ME +GV  + V +T L+  +       +  
Sbjct: 213 VVPTVFTYNTLLNACVVRKDREGVDEILGLMEREGVVASLVTYTILIEWYASSERIGEAE 272

Query: 218 ELLRSMDKRN----VMPYASILS 236
           ++   M +RN    V  Y S++S
Sbjct: 273 KVYEEMCERNVEMDVYVYTSMIS 295



 Score = 38.5 bits (88), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 42/86 (48%)

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
            V +  I +  LC   ++ +A +L  +M  +GV P    + TL+ + + + +   V E+L
Sbjct: 181 GVQSLTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDREGVDEIL 240

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNE 246
             M++  V+      +I+++    +E
Sbjct: 241 GLMEREGVVASLVTYTILIEWYASSE 266


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 6/214 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V +N II GLCK G +  AK LF  ++++   P+  TY+SLIHG   +   +EA  L   
Sbjct: 701 VMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDV 760

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+  GL  +++T+N ++  LCK+ K+  A  L + +   G+ P      N + Y  LID 
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISP------NGITYNTLIDE 814

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK GK   A +L Q +   G+ P V+TY+I I+ LC    M++A  L   M    V PN
Sbjct: 815 YCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPN 874

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + + TL+  +I+     ++ +L   M  R ++P
Sbjct: 875 YITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 908



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEAEY 72
           PN VTY  ++ G CK+G +++A+ +  +MK+  +I  + V Y  +I+G+C     ++A  
Sbjct: 286 PNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATR 345

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM D G+  ++  +N +++ LCK  +M+E  ++L  M   G+RPD +      +Y  
Sbjct: 346 VRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKY------SYNT 399

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C+ G ++ A E+ + + R GL    +TYN  +   C+   +D A  L+  M  +G
Sbjct: 400 LIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG 459

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           VAPN +  +TL+    +  +T + + L +    R +       + +++ L K
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  + N V Y+ ++D  C  G+ + A+ +   ++ + ++PNVVTY  L+ G+C      
Sbjct: 246 GMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRME 305

Query: 69  EAEYLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           EAE +  EM + G +  D V + ++++  C+  +MD+ATR+ + M   G+       +N+
Sbjct: 306 EAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGI------HVNL 359

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  +I+GLCK+G+++  +++ Q +   G+ P+  +YN  I   C +  M KA ++   
Sbjct: 360 FVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRM 419

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M   G+A   + + TL+  F   +     + L   M KR V P     S ++D L K
Sbjct: 420 MVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFK 476



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 118/267 (44%), Gaps = 41/267 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY--------- 63
           +P+  +YNT+IDG C+EG + KA E+   M    +    +TYN+L+ GFC          
Sbjct: 391 RPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALR 450

Query: 64  --------------------------ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
                                     A    +A  L+ E + RGL  +V+TFN +++ LC
Sbjct: 451 LWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLC 510

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  +M EA  LLD M +    PD+      + Y  L DG CK+G+L  A  L   +   G
Sbjct: 511 KIGRMAEAEELLDRMKELRCPPDS------LTYRTLFDGYCKLGQLGTATHLMNKMEHLG 564

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
             P+V  +N  I      +Q  K +D+  +M  +G++PN V +  L+  + ++    +  
Sbjct: 565 FAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEAC 624

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
            L   M    + P   I S ++    K
Sbjct: 625 NLYFEMVNNGMNPNVFICSALMSCFYK 651



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   YNT+I+GLCK G +++ +++  +M+D  + P+  +YN+LI G+C      +A  + 
Sbjct: 358 NLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC 417

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+  GL +  +T+N ++   C    +D+A RL  LM++ GV P      N ++   L+
Sbjct: 418 RMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAP------NEISCSTLL 471

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGL K GK + A  L +     GL  NV+T+N  I+ LC   +M +A +L   M+     
Sbjct: 472 DGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCP 531

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           P+ + + TL   + +  +      L+  M+     P
Sbjct: 532 PDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAP 567



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 6/182 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+++I G    G +D+A  L   M    + PN++TYNSLI+G C +   + A  L
Sbjct: 733 PDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNL 792

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F ++  +G+  + +T+N ++DE CK  K  EA +L   M++ G++P       ++ Y  L
Sbjct: 793 FNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQP------TVITYSIL 846

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC  G ++ A +L   +    + PN +TY   IH       M++   L+ +M ++G+
Sbjct: 847 IYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGL 906

Query: 194 AP 195
            P
Sbjct: 907 LP 908



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 32/252 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +I G CKEG + +A  L+ +M +  +NPNV   ++L+  F      +EA  +
Sbjct: 602 PNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLV 661

Query: 74  F-----IEMM---------------------DRGLQSDVVTFNVIMDELCKNRKMDEATR 107
                 I+M+                     D    S  V +NVI+  LCK+ ++ +A  
Sbjct: 662 LQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKS 721

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           L + +      PD F       Y  LI G    G +  A  L   +  AGL PN++TYN 
Sbjct: 722 LFESLRNKRFLPDNF------TYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNS 775

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I+ LC   ++ +A +LF  ++ KG++PN + + TL+  + ++ +T++  +L + M +  
Sbjct: 776 LIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEG 835

Query: 228 VMPYASILSIIV 239
           + P     SI++
Sbjct: 836 IQPTVITYSILI 847



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 124/239 (51%), Gaps = 9/239 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T   +    C++G V +A E   +M+   +  N+V Y++++  +C      +A  +
Sbjct: 216 PDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRI 275

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +  +GL  +VVT+ +++   CK+ +M+EA R++  M + G   D    ++ VAYG +
Sbjct: 276 LESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETG---DIV--VDEVAYGMM 330

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G C+ G++ +A  +   +  AG+  N+  YN  I+ LC   +M++   +  +ME  G+
Sbjct: 331 INGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGM 390

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
            P+   + TL+  + R+    K  E+ R M +  +    +  ++  + L+K   SL++I
Sbjct: 391 RPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGL----AATTLTYNTLLKGFCSLHAI 445



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 47/70 (67%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  +TY+ +I GLC +G++++A +L  QM + N++PN +TY +LIHG+  + +  E   
Sbjct: 837 QPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISK 896

Query: 73  LFIEMMDRGL 82
           L+ EM  RGL
Sbjct: 897 LYDEMHIRGL 906


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD A  L D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVP------NGVTFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AHDL  +M +KG+ P+  
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 360



 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D  T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + ++  C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 APNCVIFTTLM 204
           AP+ V +  LM
Sbjct: 419 APSVVTYNVLM 429



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A  LF +M  + + PN VT+ +LI G C     + A  
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD F       Y  
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF------TYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +    P
Sbjct: 383 LKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAP 420



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  + A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANG 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+  TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++IV+   K 
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKK 400



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A+ LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 243 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 280



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+T TY  I++  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 384 KPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 172

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           T+TYNT+++G C  G +D A +L+  M    + PN ++ ++L+ GF  A    +A  L+ 
Sbjct: 375 TLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWK 434

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           E + RGL  +VVT N +++ LCKNR+M EA  L   M       +  C  + + Y  LID
Sbjct: 435 ETLARGLARNVVTINTVINGLCKNRRMTEAEELFHRM------KEWSCPCDSLTYRTLID 488

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           G CK+G L  A ++   +   G +P+V  +N  I  L   +Q  K +D+ ++M  KG++P
Sbjct: 489 GYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSP 548

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           N V +  L+  + ++        L   M ++ + P   I S++V    +
Sbjct: 549 NTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYR 597



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 126/247 (51%), Gaps = 7/247 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKD-ENINPNVVTYNSLIHGFCYANDGNEAEY 72
           PN VTY  ++ G CKEG +++A+++  ++K+ E I  + V Y +LI+G+C      +A  
Sbjct: 232 PNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANR 291

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+D G+Q ++  +N +++  CK  +M E  +LL      GV  D +      +Y  
Sbjct: 292 VRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEY------SYNT 345

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+DG C+ G +  A E    + R G     +TYN  ++  C+   +D A  L+  M  +G
Sbjct: 346 LVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRG 405

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           V PN +  +TL+  F +  +T + + L +    R +      ++ +++ L KN     + 
Sbjct: 406 VVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAE 465

Query: 253 PQFNRQK 259
             F+R K
Sbjct: 466 ELFHRMK 472



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 12/230 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +A GN +         + +N +I GLCK G V  A+ LF  +K +   P+  TY+SLIHG
Sbjct: 637 LAGGNHQ------SAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHG 690

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
              +   + A  L  EM+   L  ++VT+N ++  LCK+  +  A  L + +   G+ P+
Sbjct: 691 CSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPN 750

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A      + Y  LIDG CK G    A +L Q + + G+ P V TY I IH LC    M++
Sbjct: 751 A------ITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEE 804

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  L   M    V PN + + TL+  + R      + +L   M    ++P
Sbjct: 805 AIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAITKLYNEMHICGLLP 854



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 32/255 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVTY  +I G CKEG +  A  L+ +M ++ + PN+   + L+  F      +EA  +
Sbjct: 548 PNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLV 607

Query: 74  FIEMMDRGL--------------------------QSDVVTFNVIMDELCKNRKMDEATR 107
             ++ D  +                          QS  + +N+++  LCK  ++ +A  
Sbjct: 608 LQKLADTDMIQDCSASTLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARN 667

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           L + +   G  PD F       Y  LI G    G +  A  L   +  A L PN+VTYN 
Sbjct: 668 LFEDLKVKGFIPDNF------TYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNS 721

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I+ LC    + +A  LF  ++ KG++PN + + TL+    +   T++  +L + M K  
Sbjct: 722 LIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEG 781

Query: 228 VMPYASILSIIVDLL 242
           + P     +I++  L
Sbjct: 782 IQPTVFTYTILIHGL 796



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T   +    C++G V  A +   +M++  ++ N+V Y++++ G+C       A  L
Sbjct: 162 PDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVARKL 221

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +  +GL  +VVT+ +++   CK  +M+EA +++       ++ +    I+ VAYG L
Sbjct: 222 LHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVK-----EIKENEKIVIDEVAYGAL 276

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G C+ G++++A  +   +  AG+  N+  YN  I+  C   +M +   L    E +GV
Sbjct: 277 INGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGV 336

Query: 194 APNCVIFTTLMPSFIRKNETSKVIE 218
             +   + TL+  + RK   +K  E
Sbjct: 337 NLDEYSYNTLVDGYCRKGFMTKAFE 361



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 11/219 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  PN ++ +T++DG  K G  ++A  L+ +     +  NVVT N++I+G C      
Sbjct: 405 GVV--PNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMT 462

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EAE LF  M +     D +T+  ++D  CK   +  AT++   M   G  P      ++ 
Sbjct: 463 EAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVP------SVE 516

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +   I GL    +     ++   ++  GL PN VTY   I   C +  +  A  L+ +M
Sbjct: 517 MFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEM 576

Query: 189 EVKGVAPNCVIFTTLMPSFIRK---NETSKVIELLRSMD 224
             KG+ PN  I + L+  F R+   +E + V++ L   D
Sbjct: 577 VEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTD 615



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 6/167 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  +++ ++      G +  A  +F +M        + + N L++    A D   A  +F
Sbjct: 93  SAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVF 152

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   G   D  T  ++    C++ ++  A   L  M + G+      ++N+VAY  ++
Sbjct: 153 QQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGL------DVNLVAYHAVM 206

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           DG C+IG+ + AR+L  SL   GL PNVVTY + +   C + +M++A
Sbjct: 207 DGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEA 253



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 9/179 (5%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           +  +++ L+     A    +A Y+F EM   G +  + + N ++++L +   +  A  + 
Sbjct: 93  SAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVF 152

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
             M   G  PD F  + I+A        C+ G++ +A +  + +   GL  N+V Y+  +
Sbjct: 153 QQMRCAGTLPDDF-TVAIMA-----KAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVM 206

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI---RKNETSKVIELLRSMDK 225
              C   Q + A  L   ++VKG++PN V +T L+  +    R  E  KV++ ++  +K
Sbjct: 207 DGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEK 265



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 70  AEYLFIEMMD--RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           A  LF ++++  +       +F++++       ++ +A  + D M + G R        +
Sbjct: 76  APTLFPDLVEVYKDFSFSAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRR------TL 129

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            +   L++ L + G +  A  + Q +  AG +P+  T  I   A C D ++  A D   +
Sbjct: 130 RSCNRLLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKE 189

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           ME  G+  N V +  +M  + R  +T    +LL S+  + + P     +++V
Sbjct: 190 MEEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLV 241


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T N ++   CK G ++KA ++F +M+   I+PN  +YN+LI G+C     N A  L
Sbjct: 214 PNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKL 273

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  +G++++VVTFN ++D  CK  K+ EA+++   M    V P      N + Y  L
Sbjct: 274 KNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAP------NTITYNTL 327

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G  ++G  +  R L + ++R G+  +++TYN  I  LC + +  KA  +  +++ + +
Sbjct: 328 INGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENL 387

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN   F+ L+     +N + +  +L +SM +    P     +++V    KNE
Sbjct: 388 VPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNE 440



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +YNT+I G C++G ++ A +L   M+ + +  NVVT+NSLI GFC     +EA  +
Sbjct: 249 PNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKV 308

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM    +  + +T+N +++   +    +   RL + M + GV+ D      I+ Y  L
Sbjct: 309 FSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKAD------ILTYNAL 362

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK GK K A  + + L +  L+PN  T++  I   C     D+A  L+  M   G 
Sbjct: 363 ILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGC 422

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            PN   F  L+ +F +  +      +L  M +R   P + +LS I
Sbjct: 423 HPNEQTFNMLVSAFCKNEDFEGAFLVLMEMFERCFTPGSDVLSEI 467



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 105/195 (53%), Gaps = 8/195 (4%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  R  GV  + N VT+N++IDG CKEG + +A ++F +MK  N+ PN +TYN+LI+G
Sbjct: 273 LKNSMRAKGV--EANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLING 330

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
                +      L+ EM   G+++D++T+N ++  LCK  K  +A  ++  + +  + P+
Sbjct: 331 HSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPN 390

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A        +  LI G C       A +L +S+ R G  PN  T+N+ + A C +E  + 
Sbjct: 391 A------STFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEG 444

Query: 181 AHDLFLDMEVKGVAP 195
           A  + ++M  +   P
Sbjct: 445 AFLVLMEMFERCFTP 459



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   + N  +  L     VD A   + +M+   I+PNV T N ++  FC +    +A  +
Sbjct: 179 PTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQV 238

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G+  +  ++N ++   C+   ++ A +L + M   GV      E N+V +  L
Sbjct: 239 FEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGV------EANVVTFNSL 292

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI--HALCNDEQMDKAHDLFLDMEVK 191
           IDG CK GKL  A ++   +    + PN +TYN  I  H+   + +M +   L+ +M   
Sbjct: 293 IDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGR--RLYEEMSRN 350

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           GV  + + +  L+    ++ +T K   +++ +DK N++P AS  S ++ 
Sbjct: 351 GVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALIS 399



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           R   S    F+ +   L   +K   AT     M   G  P       + +    +  L  
Sbjct: 140 RMCDSSPRVFDSLFKTLAHMKKFRNATDTFLQMKGYGFLP------TVESCNAYLSSLLD 193

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           + ++  A    + + R  + PNV T N+ + A C   +++KA  +F +ME  G++PN   
Sbjct: 194 LHRVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTS 253

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + TL+  + RK   +  ++L  SM  + V       + ++D   K
Sbjct: 254 YNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCK 298


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+    D NE   L   M 
Sbjct: 143 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQ 202

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+   L D M+  G+ P      N V +  LIDG C
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVP------NGVTFTTLIDGHC 256

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P++VTYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 257 KNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 316

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E    M K N+    + Y +++S
Sbjct: 317 TYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALIS 358



 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 106/191 (55%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P++VTYN+LI+G C   D  +A+ L
Sbjct: 243 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDL 302

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 303 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDD------VAYTAL 356

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 357 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY 416

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 417 VPSVVTYNVLM 427



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D   ELF +M D  + PN VT+ +LI G C     + A  
Sbjct: 207 QPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAME 266

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D+VT+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 267 IYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK------ITYTT 320

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E    + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 321 LIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 380

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P    +T ++  F +K +     +L++ M +   +P
Sbjct: 381 LKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP 418



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +++   L   M+   + P+V TY+ LI+G C  +  ++   
Sbjct: 172 RPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNE 231

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D GL  + VTF  ++D  CKN ++D A  +   M+   + PD      +V Y  
Sbjct: 232 LFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LVTYNT 285

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 286 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKEN 345

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 346 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 398



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ II    + GF+  A E +   K+        T   ++              
Sbjct: 67  RSDIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 126

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M   CK  ++  A  + D + + G+RP      ++V++  
Sbjct: 127 FYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRP------SVVSFNT 180

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K+G L     L +++  +G+ P+V TY++ I+ LC + +MD  ++LF +M   G
Sbjct: 181 LMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXG 240

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 241 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 278



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 53/112 (47%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      +     G   ++  +NI +H+ C + ++  A  +F  +   G
Sbjct: 111 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWG 170

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +I+  + ++   L ++M    V P     S++++ L K
Sbjct: 171 LRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCK 222



 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP   TY  II+  CK+G V    +L  +M+ +   P+VVTYN L++G
Sbjct: 382 KPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 38/267 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V+YNT+IDG  K   V+ A +LFL+M     +P+VVTY++LI G C A   +EA 
Sbjct: 359 CTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAH 418

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               EM+ + +   V  ++ ++  LC+  ++D A+ + D M+  G      C+ N+  Y 
Sbjct: 419 SYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANG------CQPNLAVYN 472

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI GLCK G+L +A+   + +T  G  P+ VTY   I  LC   + D+A DL++    +
Sbjct: 473 SLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQ 532

Query: 192 GV--------------------------------APNCVIFTTLMPSFIRKNETSKVIEL 219
           G+                                +P    + T++ S  ++N  ++  +L
Sbjct: 533 GIEISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQL 592

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKNE 246
           L  M    + P  S +  +V  + + +
Sbjct: 593 LEDMIGAGIKPDGSTVDALVGAMCRQD 619



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    Y ++I G CK G + KA  L   MK +    + +TYN+LIHG C   + + A  L
Sbjct: 255 PTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYEL 314

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM       D+ T+++++  LC+ +++ EA  LL     G +R +  C  N+V+Y  L
Sbjct: 315 LEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLL-----GTLRNEDDCTPNVVSYNTL 369

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K  ++ +A +L   +  AG  P+VVTY+  I  LCN  +  +AH    +M  K +
Sbjct: 370 IDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKI 429

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P   ++++++    R  E      +  SM      P  ++ + ++  L K 
Sbjct: 430 LPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKT 481



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 116/214 (54%), Gaps = 8/214 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEAEY 72
           P+  TY+ +I GLC+   + +A++L   +++E+   PNVV+YN+LI GF  A   N+A  
Sbjct: 325 PDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQ 384

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF+EM+  G   DVVT++ ++  LC   +  EA   L+ M+   + P       +  Y  
Sbjct: 385 LFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILP------KVPVYSS 438

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLC+ G+L  A  +  S+   G  PN+  YN  I+ LC   ++  A     +M  +G
Sbjct: 439 VISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERG 498

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIEL-LRSMDK 225
            +P+ V + TL+    R + T +  +L +RS+++
Sbjct: 499 CSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQ 532



 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 7/217 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + +TYNT+I G C+   +D+A EL  +MK  +  P++ TY+ LI G C A   +EA  L 
Sbjct: 291 DNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLL 350

Query: 75  IEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             + +      +VV++N ++D   K  ++++A +L   M+  G  PD      +V Y  L
Sbjct: 351 GTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPD------VVTYSTL 404

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC  G+   A    + +    ++P V  Y+  I  LC   ++D A  +F  M   G 
Sbjct: 405 IRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGC 464

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN  ++ +L+    +          ++ M +R   P
Sbjct: 465 QPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSP 501



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 112/212 (52%), Gaps = 9/212 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN   YN++I GLCK G +  AK    +M +   +P+ VTY +LI G C  +  +EA 
Sbjct: 464 CQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEAC 523

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L++  +++G++    + NV++  L   R +++A R+L +++  G  P AF       Y 
Sbjct: 524 DLYVRSLEQGIEISETSCNVVIASL---RCLEQAQRVLRVVLATGNSPTAF------FYA 574

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+ LCK   L  AR+L + +  AG+ P+  T +  + A+C  ++   A     +M   
Sbjct: 575 TVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRL 634

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G  P+   ++TL+ +  +  + S+   +LR +
Sbjct: 635 GSKPSVGTYSTLLNALFKAGKPSEAHVVLRRL 666



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 29/238 (12%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TYN   + L + G  ++A  LF +   + + P+ +TY  LI G C       A  L+ EM
Sbjct: 92  TYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEM 151

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD------------LMIQG---GVRPDAF 122
           +DRGL+  V+T   +++ LCK+  ++ A R  +            ++I G    +R D  
Sbjct: 152 VDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSIPCAATWTILIDGLFRAIRVDEA 211

Query: 123 CEI----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
           C            N   Y  +I+GL K GK+  A  + Q +     +P +  Y   I   
Sbjct: 212 CYYFEEMKHTAIPNNWTYTVVINGLVKAGKVAEAERVLQEMP----VPTLANYTSVIGGH 267

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           C    M KA+ L  DM+ KG   + + + TL+    R  E  +  ELL  M   + +P
Sbjct: 268 CKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVP 325



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 117/296 (39%), Gaps = 71/296 (23%)

Query: 13  KPNTVTYNTIIDGLCKEG--------------------------------FVDKAKELFL 40
           +P  +T   +++ LCK G                                 VD+A   F 
Sbjct: 157 RPVVLTCKFLLNALCKSGNLELALRYFEKMSSIPCAATWTILIDGLFRAIRVDEACYYFE 216

Query: 41  QMKDENINPNVVTY-------------------------------NSLIHGFCYANDGNE 69
           +MK   I PN  TY                                S+I G C A D  +
Sbjct: 217 EMKHTAI-PNNWTYTVVINGLVKAGKVAEAERVLQEMPVPTLANYTSVIGGHCKAGDMGK 275

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A +L  +M  +G Q D +T+N ++   C+ +++D A  LL+ M      PD F       
Sbjct: 276 AYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIF------T 329

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           Y  LI GLC+  +L  AR+L  +L       PNVV+YN  I       +++ A+ LFL+M
Sbjct: 330 YDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEM 389

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              G  P+ V ++TL+         S+    L  M  + ++P   + S ++  L +
Sbjct: 390 VTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCR 445



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 13/246 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +A GN        P    Y T+I+ LCKE  + +A++L   M    I P+  T ++L+  
Sbjct: 562 LATGN-------SPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGA 614

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C  +    A     EM+  G +  V T++ +++ L K  K  EA  +L  +I       
Sbjct: 615 MCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLIS-----H 669

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
             C  + + Y  LI       +++ AR + Q L     + ++V YN  +  L     +  
Sbjct: 670 TSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQM 729

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            ++L  +M+      N   F  L+  F R  +T + + +L  M K+ + P A+I+  +VD
Sbjct: 730 VYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEM-KKVLTPSAAIIKFLVD 788

Query: 241 LLVKNE 246
            L + E
Sbjct: 789 ELARAE 794



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 14/193 (7%)

Query: 45  ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
           ++    V TYN             EA  LF E   + L  D +T+ +++  LC   K+  
Sbjct: 84  QDFRHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKL 143

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           A  L + M+  G+RP        V   C  L++ LCK G L+ A    + ++    +P  
Sbjct: 144 ACSLYEEMVDRGLRP--------VVLTCKFLLNALCKSGNLELALRYFEKMSS---IPCA 192

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            T+ I I  L    ++D+A   F +M+   + PN   +T ++   ++  + ++   +L+ 
Sbjct: 193 ATWTILIDGLFRAIRVDEACYYFEEMKHTAI-PNNWTYTVVINGLVKAGKVAEAERVLQE 251

Query: 223 MDKRNVMPYASIL 235
           M    +  Y S++
Sbjct: 252 MPVPTLANYTSVI 264



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 96/215 (44%), Gaps = 10/215 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   KP+  T + ++  +C++     A     +M      P+V TY++L++    A   +
Sbjct: 598 GAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPS 657

Query: 69  EAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEIN 126
           EA  +   ++       D + +  ++       +++EA  +L +L  + G++       +
Sbjct: 658 EAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQ-------S 710

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           IVAY  L+ GL +   L+   EL + + R   + N  T+NI I   C   Q D+A  +  
Sbjct: 711 IVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLS 770

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           +M+ K + P+  I   L+    R     +  +L++
Sbjct: 771 EMK-KVLTPSAAIIKFLVDELARAEREQESKDLVK 804


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 106/191 (55%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A +L
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 285

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  + L+ D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 286 IDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE------VAYTAL 339

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 340 ISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 399

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 400 VPSVVTYNVLM 410



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVTFTTLIDGHC 239

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AH L  +M +K + P+ +
Sbjct: 240 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKI 299

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 300 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALIS 341



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M    ++PD       + Y  
Sbjct: 250 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDK------ITYTT 303

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L +A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 304 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVG 363

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 364 LKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 401



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 155 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 215 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++   L P+ +TY   I   C +  +D A +    M  + 
Sbjct: 269 LIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P +   ++I++   K 
Sbjct: 329 IRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKK 381



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 163

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 164 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 223

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 224 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 261



 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP++ TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 365 KPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 43.5 bits (101), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 153

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 154 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 205


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY++II  LCK   +DKA E+  +M    + PN  TY SL+HGFC +    EA   
Sbjct: 231 PNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKF 290

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G++ +VVT++  MD LCKN +  EA ++   M++ G++PD      I  Y  L
Sbjct: 291 LEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPD------ITTYSSL 344

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L     L   + ++ + P+   +N  I+A     ++D+A  +F  M  +G+
Sbjct: 345 LHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGL 404

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PNCV + TL+  + +       + L + M    V P
Sbjct: 405 KPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSP 441



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C PN V+Y+T+ DGL K G  DKA   + +M D  I PNVVTY+S+I   C     +
Sbjct: 191 GGGCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMD 250

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +   M+  G+  +  T+  ++   C + ++ EA + L+ M   GV P      N+V
Sbjct: 251 KAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEP------NVV 304

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y   +D LCK G+   AR++  S+ + GL P++ TY+  +H    +  + + H LF  M
Sbjct: 305 TYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLM 364

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
               + P+  +F TL+ +  ++ +  + + +   M  + + P
Sbjct: 365 VQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKP 406



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 123/238 (51%), Gaps = 10/238 (4%)

Query: 4   GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGF 61
           G  E G  C PN  ++  I+ GLC E    +A EL   M D+     PNVV+Y+++  G 
Sbjct: 151 GMTELG--CVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGL 208

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
               D ++A   + EM+DR +  +VVT++ I+  LCK + MD+A  + D M++ GV P+ 
Sbjct: 209 LKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNC 268

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           F       Y  L+ G C  G+L  A +  + +   G+ PNVVTY+  +  LC + +  +A
Sbjct: 269 F------TYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEA 322

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             +F  M  +G+ P+   +++L+  +  +    ++  L   M + ++ P   + + ++
Sbjct: 323 RKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLI 380



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 6/180 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY++ +D LCK G   +A+++F  M    + P++ TY+SL+HG+       E   
Sbjct: 300 EPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHG 359

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M+   +Q D   FN ++    K  K+DEA  +   M   G++P      N V Y  
Sbjct: 360 LFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKP------NCVTYNT 413

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G CKI +++NA  L Q +   G+ PN +TYNI +  L    +   A + ++ +   G
Sbjct: 414 LINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTGTAKEFYVQIIKSG 473



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 104/233 (44%), Gaps = 5/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           P   TY  +I   C  G +D        +  +      + +N L+ G C     ++A + 
Sbjct: 88  PTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDI 147

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G   +V +  +I+  LC   +  EA  LL +M   G      C  N+V+Y  
Sbjct: 148 VLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDG----GGCLPNVVSYST 203

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           + DGL K G    A    + +    ++PNVVTY+  I ALC  + MDKA ++   M   G
Sbjct: 204 VTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNG 263

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PNC  +T+L+  F    + ++ I+ L  M    V P     S  +D L KN
Sbjct: 264 VTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKN 316



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 9/164 (5%)

Query: 86  VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145
           V T+ +++   C   ++D     L  +++ G R      +  + +  L+ GLC   +  +
Sbjct: 90  VHTYGILIGCCCSAGRLDLGFAALGHVVKKGFR------VEPIIFNPLLKGLCADKRTDD 143

Query: 146 ARELS-QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM--EVKGVAPNCVIFTT 202
           A ++  + +T  G +PNV ++ I +  LC++ +  +A +L   M  +  G  PN V ++T
Sbjct: 144 AMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYST 203

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +    ++  +  K     R M  R ++P     S I+  L K +
Sbjct: 204 VTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQ 247


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 137/240 (57%), Gaps = 11/240 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EF V   P+ VTYNTI+  + K+G +   K+L L MK   + PN VTYN+L++G+C    
Sbjct: 233 EFNV--NPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGS 290

Query: 67  GNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             EA +  +E+M +  +  D+ T+N++++ +C    + E   L+D+M    ++PD     
Sbjct: 291 LKEA-FQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPD----- 344

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y  LIDG  ++G    A++L + +   G+ PN VT+NI++  LC +E+ ++     
Sbjct: 345 -VVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKV 403

Query: 186 LDM-EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++ E+ G +P+ V + TL+ ++++  + S  +E++R M ++ +      L+ I+D L K
Sbjct: 404 KELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCK 463



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN +I+G+C  G + +  EL   MK   + P+VVTYN+LI G        EA+ L
Sbjct: 308 PDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKL 367

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGC 132
             +M + G++ + VT N+ +  LCK  K +E TR +  +++  G  PD      IV Y  
Sbjct: 368 MEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPD------IVTYHT 421

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI    K+G L  A E+ + + + G+  N +T N  + ALC + ++D+AH+L      +G
Sbjct: 422 LIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRG 481

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              + V + TL+  + R+ +  K  E+   M +  + P  +  + ++
Sbjct: 482 YIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLI 528



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 13/248 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKD----ENINPNVVTYNSLIHGFCYANDGN 68
           KPN VT+N  +  LCKE   +K +E+  ++K+       +P++VTY++LI  +    D +
Sbjct: 377 KPNQVTHNISLKWLCKE---EKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLS 433

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  +  EM  +G++ + +T N I+D LCK RK+DEA  LLD   + G   D       V
Sbjct: 434 GALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDE------V 487

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            YG LI G  +  K++ A E+   + R  + P V T+N  I  LC+  + + A + F ++
Sbjct: 488 TYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDEL 547

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
              G+ P+   F +++  + ++    K  E      K +  P     +I+++ L K  ++
Sbjct: 548 AESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMT 607

Query: 249 LNSIPQFN 256
             ++  FN
Sbjct: 608 EKALNFFN 615



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 111/211 (52%), Gaps = 9/211 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTY T+I G  +E  V+KA E++ +MK   I P V T+NSLI G C+      A   F E
Sbjct: 487 VTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDE 546

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLID 135
           + + GL  D  TFN I+   CK  ++++A    +  I+   +PD + C I       L++
Sbjct: 547 LAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNI-------LLN 599

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLCK G  + A     +L     + + VTYN  I A C D+++ +A+DL  +ME K + P
Sbjct: 600 GLCKEGMTEKALNFFNTLITEREV-DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEP 658

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           +   + +++ S +   + S+  ELL+    +
Sbjct: 659 DRFTYNSIITSLMEDGKLSEADELLKKFSGK 689



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 119/238 (50%), Gaps = 10/238 (4%)

Query: 13  KPNTVTYNTIIDGLCK--EGF-VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           KPN +T NT++ GL +    F +  A+E+F  M    ++ +V T+N L++G+C      +
Sbjct: 163 KPNLLTCNTLLIGLVRYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLED 222

Query: 70  AEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           A  +   M+    +  D VT+N I+  + K  ++ +   LL  M + G+ P      N V
Sbjct: 223 ALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVP------NRV 276

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G CK+G LK A ++ + + +  ++P++ TYNI I+ +CN   + +  +L   M
Sbjct: 277 TYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVM 336

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +   + P+ V + TL+        + +  +L+  M+   V P     +I +  L K E
Sbjct: 337 KSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEE 394



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 109/231 (47%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC-YANDGN--EA 70
           P+   ++  +      G    A ++F +M    + PN++T N+L+ G   Y +  +   A
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASA 188

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIVA 129
             +F +M+  G+  DV TFNV+++  C   K+++A  +L+ M+ +  V PD       V 
Sbjct: 189 REVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDN------VT 242

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++  + K G+L + ++L   + R GL+PN VTYN  ++  C    + +A  +   M+
Sbjct: 243 YNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMK 302

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              + P+   +  L+          + +EL+  M    + P     + ++D
Sbjct: 303 QTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLID 353



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 18/149 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T N +++GLCKEG  +KA   F  +  E    + VTYN++I  FC      EA  
Sbjct: 588 KPDNYTCNILLNGLCKEGMTEKALNFFNTLITER-EVDTVTYNTMISAFCKDKKLKEAYD 646

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL------------DLMIQGGVRPD 120
           L  EM ++ L+ D  T+N I+  L ++ K+ EA  LL            +L ++    P 
Sbjct: 647 LLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKFSGKFGSMKRNLHLETEKNPA 706

Query: 121 AF-----CEINIVAYGCLIDGLCKIGKLK 144
                   +   +AY  +I+ LC  G+LK
Sbjct: 707 TSESKEELKTEAIAYSDVINELCSRGRLK 735



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 23/115 (20%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TVTYNT+I   CK+  + +A +L  +M+++ + P+  TYNS+I         +EA+ L 
Sbjct: 624 DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELL 683

Query: 75  IEM------MDRG-----------------LQSDVVTFNVIMDELCKNRKMDEAT 106
            +       M R                  L+++ + ++ +++ELC   ++ E +
Sbjct: 684 KKFSGKFGSMKRNLHLETEKNPATSESKEELKTEAIAYSDVINELCSRGRLKEHS 738


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
             V++NT+I G+C+ G +D A+ L  +M +  + P+V TY +LI G C      +A  +F
Sbjct: 274 TVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVF 333

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M  RG++ + V F +++D  CK    +    L   M + GVRPDA      V Y  ++
Sbjct: 334 EKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDA------VTYNAIV 387

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLC+   LK+A  +   +  AGL P+ VTY   I   C +E++D A ++  +M  +GV 
Sbjct: 388 NGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVG 447

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + V +T L+    +   ++    +L  M +  + P  +  ++++D   + 
Sbjct: 448 LDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRK 498



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V +  +ID  CK+G  +   EL  +M++  + P+ VTYN++++G C A D   A  
Sbjct: 342 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASG 401

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           + +EM   GL+ D VT+  ++D  CK  ++D A  +   M+  GV  D       V Y  
Sbjct: 402 IVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDE------VTYTA 455

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GL K G+  +A  +   +  AGL P+  TY + I A C    +     L  +M+ KG
Sbjct: 456 LISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKG 515

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             P  V +  +M  F +  +      LL +M    V P     +I++D
Sbjct: 516 RKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLD 563



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 108/201 (53%), Gaps = 9/201 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TVTY T+IDG CKE  +D A E+   M  E +  + VTY +LI G   A    +AE 
Sbjct: 412 RPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAER 471

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EMM+ GL+ D  T+ +++D  C+   +    RLL  M   G +P       +V Y  
Sbjct: 472 VLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKP------GVVTYNV 525

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++G CK+G++KNA  L  ++   G+ P+ +TYNI +   C   ++    +L      KG
Sbjct: 526 IMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL---KSAKG 582

Query: 193 VAPNCVIFTTLMPSFIRKNET 213
             P+  ++T+++   ++K  T
Sbjct: 583 TVPDLGVYTSIVGEIVKKKTT 603



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV   P+  TY  +I GLC+ G ++ A+ +F +M    + PN V +  LI   C   D
Sbjct: 303 EAGVT--PDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGD 360

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
                 L  EM +RG++ D VT+N I++ LC+ R +  A+ ++  M   G+RPD      
Sbjct: 361 AETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDT----- 415

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V Y  LIDG CK  +L  A E+ Q++   G+  + VTY   I  L    +   A  +  
Sbjct: 416 -VTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLG 474

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +M   G+ P+   +T ++ +F RK +    + LL+ M  +   P     ++I++   K
Sbjct: 475 EMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCK 532



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N ++  L + G +  A+ +F +M+   +   VV++N++I G C A D + AE L
Sbjct: 238 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 297

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M + G+  DV T+  ++  LC+  ++++A  + + M   G++P+A      V +  L
Sbjct: 298 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNA------VVFTIL 351

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  CK G  +   EL + +   G+ P+ VTYN  ++ LC    +  A  + ++M   G+
Sbjct: 352 IDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGL 411

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+ V +TTL+  + ++ E    +E+ ++M
Sbjct: 412 RPDTVTYTTLIDGYCKEEELDMAMEIKQNM 441



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 6/213 (2%)

Query: 34  KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           +A   +LQ+ D  + P    +N L+       +   A+ +F EM  RG++  VV+FN ++
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153
             +C+   +D A  L   M + GV PD +       YG LI GLC++G++++AR + + +
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVY------TYGALIQGLCRVGRIEDARGVFEKM 336

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
              G+ PN V + I I A C     +   +L  +M  +GV P+ V +  ++    R  + 
Sbjct: 337 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 396

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
                ++  M    + P     + ++D   K E
Sbjct: 397 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE 429


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 9/238 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FGV  K      + ++  LCK   V +A+E F ++  E + PN  TY+ L+ G+    D
Sbjct: 151 DFGV--KAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVE-VMPNAKTYSILMRGWGDVGD 207

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            +EA  LF EM +RG   DVV +N +++ LCK   +DEA +L   M   G+ PDA     
Sbjct: 208 SSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDA----- 262

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             +Y   I   C++  + +A ++   + R  L+PNV TYN  +  LC  E++D+A+ L  
Sbjct: 263 -CSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLD 321

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +M  +GV+P+   +  +        E +K + L+  M+K N MP     ++++ +L++
Sbjct: 322 EMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLR 379



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 125/255 (49%), Gaps = 19/255 (7%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G  C  + V YN++++ LCK G VD+A +LF +M    + P+  +Y+  I  +C  N
Sbjct: 219 RERG--CAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVN 276

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D + A  +   M    L  +V T+N I+ +LCK+ K+DEA +LLD MI+ GV PD +   
Sbjct: 277 DIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYN 336

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            I A+ C     C++ K   A  L   + +   MP+  TYN+ +  L    + D+  D++
Sbjct: 337 AIQAFHC---DHCEVNK---ALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVW 390

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKN----ETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             ME +G  P    +  ++  F +K     E  K  E+   M    + PY    S  V+L
Sbjct: 391 GGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEM---MIDDGIPPY----SCTVEL 443

Query: 242 LVKNEISLNSIPQFN 256
           L    I L    Q +
Sbjct: 444 LRNRVIGLGFSEQID 458



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 7/190 (3%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           +   +C AN   +A   F +M D G+++ V   + ++  LCK + + +A    D  +   
Sbjct: 129 IFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFD-KVNVE 187

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           V P+A        Y  L+ G   +G    AR+L + +   G   +VV YN  + ALC   
Sbjct: 188 VMPNA------KTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGG 241

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
            +D+A+ LF +M   G+AP+   ++  + ++   N+     ++L  M + N++P     +
Sbjct: 242 NVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYN 301

Query: 237 IIVDLLVKNE 246
            IV  L K+E
Sbjct: 302 CIVKKLCKSE 311


>gi|3152594|gb|AAC17075.1| Contains repeats similar to RECA protein gb|L26100 from
           Acinetobacter calcoaceticus [Arabidopsis thaliana]
          Length = 566

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y  +++ LCK G V  A +L  +M+D     N VTYN+L+ G C     N++   
Sbjct: 129 PDASAYTYLVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQF 188

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +M +GL  +  T++ +++   K R  DEA +LLD +I  G  P      N+V+Y  L
Sbjct: 189 VERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIVKGGEP------NLVSYNVL 242

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK G+  +A  L + L   G   NVV+YNI +  LC D + ++A+ L  +M+    
Sbjct: 243 LTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEEANSLLAEMDGGDR 302

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           AP+ V +  L+ S      T + +++L+ M K N
Sbjct: 303 APSVVTYNILINSLAFHGRTEQALQVLKEMSKGN 336



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 10/230 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V+YN ++ G CKEG  D A  LF ++  +    NVV+YN L+   C      EA  
Sbjct: 233 EPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEEANS 292

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM        VVT+N++++ L  + + ++A ++L  M +G  +      +   +Y  
Sbjct: 293 LLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLKEMSKGNHQ----FRVTATSYNP 348

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK GK+    +    +      PN  TYN  I +LC  E   K  + F  ++   
Sbjct: 349 VIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYN-AIGSLC--EHNSKVQEAFYIIQSLS 405

Query: 193 VAPNCV---IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
               C     + +++ S  RK  T    +LL  M +    P A   S ++
Sbjct: 406 NKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALI 455



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 33/188 (17%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------FCE------- 124
           G + +V     ++ +LCK  ++ +A R+++LM+  G+ PDA          C+       
Sbjct: 91  GHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYA 150

Query: 125 -------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
                         N V Y  L+ GLC +G L  + +  + L + GL PN  TY+  + A
Sbjct: 151 MQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEA 210

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRN 227
              +   D+A  L  ++ VKG  PN V +  L+  F ++  T   + L R +     K N
Sbjct: 211 AYKERGTDEAVKLLDEIIVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKAN 270

Query: 228 VMPYASIL 235
           V+ Y  +L
Sbjct: 271 VVSYNILL 278



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 100/243 (41%), Gaps = 13/243 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M+ GN +F V       +YN +I  LCKEG VD   +   +M      PN  TYN+ I  
Sbjct: 332 MSKGNHQFRVT----ATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNA-IGS 386

Query: 61  FCYANDG-NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
            C  N    EA Y+   + ++        +  ++  LC+      A +LL  M + G  P
Sbjct: 387 LCEHNSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDP 446

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARE-LSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           DA        Y  LI GLC  G    A E LS         P V  +N  I  LC   + 
Sbjct: 447 DAH------TYSALIRGLCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMILGLCKIRRT 500

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           D A ++F  M  K   PN   +  L+     ++E     E+L  +  R V+   ++  I+
Sbjct: 501 DLAMEVFEMMVEKKRMPNETTYAILVEGIAHEDELELAKEVLDELRLRKVIGQNAVDRIV 560

Query: 239 VDL 241
           +  
Sbjct: 561 MQF 563



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           L+ ++ GG +P      N+     L+  LCK  +LK A  + + +  +G++P+   Y   
Sbjct: 84  LESLVTGGHKP------NVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYL 137

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           ++ LC    +  A  L   ME  G   N V +  L+         ++ ++ +  + ++ +
Sbjct: 138 VNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGL 197

Query: 229 MPYASILSIIVDLLVK 244
            P A   S +++   K
Sbjct: 198 APNAFTYSFLLEAAYK 213


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N + +NT+IDG C+ G VDKA E+   M+   I  +V TYN+L  G C  N   +A+ L 
Sbjct: 307 NQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLL 366

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M + G++S+ V++  ++    K   M EA RL   M   G RP      ++V Y  +I
Sbjct: 367 HIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRP------SVVTYNVMI 420

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G ++ A    + + + GL+P+V TY   +H  C + ++D A  LF +M+ +G  
Sbjct: 421 DGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAK 480

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           PN V +T L+    ++  + +  +   +M    + P  ++ S++V  L
Sbjct: 481 PNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSL 528



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 117/221 (52%), Gaps = 10/221 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y+ +I+  C+ G V +A E+F +     I PN  TY +LI+GFC       AE L  +M 
Sbjct: 241 YSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQ 300

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
            RG+  + + FN ++D  C++  +D+A  +  +M + G+      ++++  Y  L  GLC
Sbjct: 301 LRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGI------QLDVYTYNTLACGLC 354

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           ++ ++++A++L   +T  G+  N V+Y   I     +  M +A  LF DME KG  P+ V
Sbjct: 355 RVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVV 414

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
            +  ++  +I+     +     + M+K+ ++P    YA+++
Sbjct: 415 TYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALV 455



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY  +I+G CK G ++ A+ L   M+   +  N + +N++I G+C     ++A  
Sbjct: 270 EPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALE 329

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M   G+Q DV T+N +   LC+  +M++A +LL +M + GV      E N V+Y  
Sbjct: 330 IKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGV------ESNYVSYTT 383

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI    K G +  AR L + +   G  P+VVTYN+ I        + +A     +ME KG
Sbjct: 384 LISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKG 443

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+   +  L+       +    + L   M +R   P     + ++  L K
Sbjct: 444 LVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAK 495



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 124/247 (50%), Gaps = 9/247 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P   TY  ++DGL   G + K + +F ++K +N+  +V  Y+++I+ +C A +   A  
Sbjct: 200 EPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASE 259

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYG 131
           +F E +  G++ +  T+  +++  CK  +++ A  LL D+ ++G          N + + 
Sbjct: 260 VFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRG-------VGHNQIIFN 312

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG C+ G +  A E+   + R G+  +V TYN     LC   +M+ A  L   M   
Sbjct: 313 TMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTEN 372

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           GV  N V +TTL+    ++ +  +   L R M+ +   P     ++++D  +K+  S+  
Sbjct: 373 GVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSG-SIRE 431

Query: 252 IPQFNRQ 258
             +F ++
Sbjct: 432 AERFKKE 438



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 6/166 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V+Y T+I    KEG + +A+ LF  M+ +   P+VVTYN +I G+  +    EAE   
Sbjct: 377 NYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFK 436

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  +GL  DV T+  ++   C N K+D A RL + M Q G +P      N+VAY  LI
Sbjct: 437 KEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKP------NVVAYTALI 490

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            GL K G+ + A +   ++  AGL P+   Y++ + +L  D++ D+
Sbjct: 491 SGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTDKRKDE 536



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 8/213 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC-YANDGNEAEYLFI 75
           ++ + ++DG CK G +D A+ L  +M    +  N   YN L+  +    ND   AE L  
Sbjct: 134 LSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVL-K 192

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           EM   G++  V T+ +++D L     + +   + D + +  V  D +       Y  +I+
Sbjct: 193 EMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYF------YSAVIN 246

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
             C+ G ++ A E+       G+ PN  TY   I+  C   Q++ A  L  DM+++GV  
Sbjct: 247 AYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGH 306

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           N +IF T++  + R     K +E+   M++  +
Sbjct: 307 NQIIFNTMIDGYCRHGMVDKALEIKAVMERMGI 339



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 63/112 (56%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G   +P+ VTYN +IDG  K G + +A+    +M+ + + P+V TY +L+HG C     +
Sbjct: 406 GKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVD 465

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            A  LF EM  RG + +VV +  ++  L K  + +EA +  D M+  G+ PD
Sbjct: 466 VALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPD 517



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  ++ G C  G VD A  LF +MK     PNVV Y +LI G        EA   
Sbjct: 446 PDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQF 505

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
           +  M+  GL  D   +++++  L  +++ DE
Sbjct: 506 YDNMLAAGLTPDDTLYSMLVGSLHTDKRKDE 536



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 48/104 (46%)

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           I  ++   ++DG CK G++ +AR L   + R G+  N   YN  +      +   +  ++
Sbjct: 131 ITPLSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEV 190

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             +ME  GV P    +T L+       + SKV  +   + ++NV
Sbjct: 191 LKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNV 234


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPNTV +N +I   CKE  + +A E+F +M  +   P+V T+NSLI G C  ++   A +
Sbjct: 450 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 509

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+  G+ ++ VT+N +++   +  ++ EA +L++ M+  G   D       + Y  
Sbjct: 510 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDE------ITYNS 563

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+ G++  AR L + + R GL+P+ ++ NI I+ LC    +++A +   +M ++G
Sbjct: 564 LIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRG 623

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             P+ V F +L+    R       + + R +    + P     + ++  L K 
Sbjct: 624 STPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKG 676



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 109/219 (49%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN  +Y  ++DG CK G +D+A  L  +M  + + PN V +N LI  FC  +   EA 
Sbjct: 414 CKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAV 473

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM  +G + DV TFN ++  LC+  ++  A  LL  MI  GV        N V Y 
Sbjct: 474 EIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVA------NTVTYN 527

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+   + G++K AR+L   +   G + + +TYN  I  LC   ++DKA  LF  M   
Sbjct: 528 TLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 587

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P+ +    L+    R     + +E  + M  R   P
Sbjct: 588 GLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTP 626



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 8/239 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            +G+V  P+  TYN++I G  K+G V  A E+   M+++   PNV +Y  L+ GFC    
Sbjct: 376 SYGIV--PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGK 433

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            +EA  L  EM   GL+ + V FN ++   CK  ++ EA  +   M + G +PD +    
Sbjct: 434 IDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVY---- 489

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              +  LI GLC++ ++K+A  L + +   G++ N VTYN  I+A     ++ +A  L  
Sbjct: 490 --TFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 547

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +M  +G   + + + +L+    R  E  K   L   M +  ++P +   +I+++ L ++
Sbjct: 548 EMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRS 606



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 11/232 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   T+  ++  LC    VD A  +   M      PN V Y +LIH     N  NEA  L
Sbjct: 209 PTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQL 268

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   G   D  TFN ++  LCK  +++EA ++++ M+  G  PD       + YG L
Sbjct: 269 LEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDD------ITYGYL 322

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-G 192
           ++GLCKIG++  A++L   + +    P  V +N  IH      ++D A  +  DM    G
Sbjct: 323 MNGLCKIGRVDAAKDLFYRIPK----PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYG 378

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+   + +L+  + +K      +E+LR M  +   P     +I+VD   K
Sbjct: 379 IVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCK 430



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 61/279 (21%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+V Y T+I  L K   V++A +L  +M      P+  T+N +I G C  +  NEA 
Sbjct: 242 CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAA 301

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL---------------------- 109
            +   M+ RG   D +T+  +M+ LCK  ++D A  L                       
Sbjct: 302 KMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHG 361

Query: 110 ----------DLMIQGGVRPDAF-----------------------------CEINIVAY 130
                     D++   G+ PD                               C+ N+ +Y
Sbjct: 362 RLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSY 421

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L+DG CK+GK+  A  L   ++  GL PN V +N  I A C + ++ +A ++F +M  
Sbjct: 422 TILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPR 481

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           KG  P+   F +L+      +E    + LLR M    V+
Sbjct: 482 KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVV 520



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 111/201 (55%), Gaps = 10/201 (4%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV   NTVTYNT+I+   + G + +A++L  +M  +    + +TYNSLI G C A + +
Sbjct: 518 GVVA--NTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVD 575

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  LF +M+  GL    ++ N++++ LC++  ++EA      M+  G  PD      IV
Sbjct: 576 KARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPD------IV 629

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  LI+GLC+ G++++   + + L   G+ P+ VTYN  +  LC    +  A  L LD 
Sbjct: 630 TFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDAC-LLLDE 688

Query: 189 EVK-GVAPNCVIFTTLMPSFI 208
            ++ G  PN   ++ L+ S +
Sbjct: 689 GIEDGFVPNDRTWSILLQSLV 709



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 6/166 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + +TYN++I GLC+ G VDKA+ LF +M  + + P+ ++ N LI+G C +    EA    
Sbjct: 557 DEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQ 616

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ RG   D+VTFN +++ LC+  ++++   +   +   G+ PD       V Y  L+
Sbjct: 617 KEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDT------VTYNTLM 670

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
             LCK G + +A  L       G +PN  T++I + +L   E +D+
Sbjct: 671 SWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQETLDR 716



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 52/93 (55%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+N++I+GLC+ G ++    +F +++ E I P+ VTYN+L+   C      +A  L
Sbjct: 626 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLL 685

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
             E ++ G   +  T+++++  L     +D  T
Sbjct: 686 LDEGIEDGFVPNDRTWSILLQSLVPQETLDRRT 718



 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 37/85 (43%)

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P   +YN+ +  L +      A ++F DM  + + P    F  +M +    NE    + +
Sbjct: 174 PTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSV 233

Query: 220 LRSMDKRNVMPYASILSIIVDLLVK 244
           LR M K   +P + I   ++  L K
Sbjct: 234 LRDMTKHGCVPNSVIYQTLIHSLSK 258


>gi|30699392|ref|NP_178029.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806390|sp|A3KPF8.1|PP131_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g79080, chloroplastic; Flags: Precursor
 gi|126352286|gb|ABO09888.1| At1g79080 [Arabidopsis thaliana]
 gi|332198080|gb|AEE36201.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 576

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y  +++ LCK G V  A +L  +M+D     N VTYN+L+ G C     N++   
Sbjct: 139 PDASAYTYLVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQF 198

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +M +GL  +  T++ +++   K R  DEA +LLD +I  G  P      N+V+Y  L
Sbjct: 199 VERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIVKGGEP------NLVSYNVL 252

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G CK G+  +A  L + L   G   NVV+YNI +  LC D + ++A+ L  +M+    
Sbjct: 253 LTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEEANSLLAEMDGGDR 312

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           AP+ V +  L+ S      T + +++L+ M K N
Sbjct: 313 APSVVTYNILINSLAFHGRTEQALQVLKEMSKGN 346



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 10/230 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V+YN ++ G CKEG  D A  LF ++  +    NVV+YN L+   C      EA  
Sbjct: 243 EPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEEANS 302

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM        VVT+N++++ L  + + ++A ++L  M +G  +      +   +Y  
Sbjct: 303 LLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLKEMSKGNHQ----FRVTATSYNP 358

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK GK+    +    +      PN  TYN  I +LC  E   K  + F  ++   
Sbjct: 359 VIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYN-AIGSLC--EHNSKVQEAFYIIQSLS 415

Query: 193 VAPNCV---IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
               C     + +++ S  RK  T    +LL  M +    P A   S ++
Sbjct: 416 NKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALI 465



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 33/188 (17%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------FCE------- 124
           G + +V     ++ +LCK  ++ +A R+++LM+  G+ PDA          C+       
Sbjct: 101 GHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYA 160

Query: 125 -------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
                         N V Y  L+ GLC +G L  + +  + L + GL PN  TY+  + A
Sbjct: 161 MQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEA 220

Query: 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRN 227
              +   D+A  L  ++ VKG  PN V +  L+  F ++  T   + L R +     K N
Sbjct: 221 AYKERGTDEAVKLLDEIIVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKAN 280

Query: 228 VMPYASIL 235
           V+ Y  +L
Sbjct: 281 VVSYNILL 288



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 100/243 (41%), Gaps = 13/243 (5%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M+ GN +F V       +YN +I  LCKEG VD   +   +M      PN  TYN+ I  
Sbjct: 342 MSKGNHQFRVT----ATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNA-IGS 396

Query: 61  FCYANDG-NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
            C  N    EA Y+   + ++        +  ++  LC+      A +LL  M + G  P
Sbjct: 397 LCEHNSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDP 456

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARE-LSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           DA        Y  LI GLC  G    A E LS         P V  +N  I  LC   + 
Sbjct: 457 DAH------TYSALIRGLCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMILGLCKIRRT 510

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           D A ++F  M  K   PN   +  L+     ++E     E+L  +  R V+   ++  I+
Sbjct: 511 DLAMEVFEMMVEKKRMPNETTYAILVEGIAHEDELELAKEVLDELRLRKVIGQNAVDRIV 570

Query: 239 VDL 241
           +  
Sbjct: 571 MQF 573



 Score = 46.6 bits (109), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
           L+ ++ GG +P      N+     L+  LCK  +LK A  + + +  +G++P+   Y   
Sbjct: 94  LESLVTGGHKP------NVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYL 147

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           ++ LC    +  A  L   ME  G   N V +  L+         ++ ++ +  + ++ +
Sbjct: 148 VNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGL 207

Query: 229 MPYASILSIIVDLLVK 244
            P A   S +++   K
Sbjct: 208 APNAFTYSFLLEAAYK 223


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TYN ++ G  K G ++ A   F +M +  +NPN V+Y +LI G       + A 
Sbjct: 474 CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIAL 533

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M + G   +V ++N +++ L K  +  EA ++ D M++ G+ P      N++ Y 
Sbjct: 534 SLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLP------NVITYT 587

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLC+ G+ + A ++   + +   +PN+ TY+  I+ LC + + D+A  L  +ME K
Sbjct: 588 TLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERK 647

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+AP+ V FT+L+  F+          LLR M      P     S+++  L K
Sbjct: 648 GLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQK 700



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 118/255 (46%), Gaps = 33/255 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTVTYN +I+ LC  G    A ++F  M+      N  TYN +I G C   D  +A  L
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
           F +M+  G    VVT+N +++       ++ A RLLDLM + G  PD +           
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490

Query: 123 ----------------CEI--NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                           C +  N V+Y  LIDG  K GK+  A  L + +   G  PNV +
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I+ L  + +  +A  +   M  +G+ PN + +TTL+    R   T    ++   M+
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 610

Query: 225 KRNVMP----YASIL 235
           KR  +P    Y+S++
Sbjct: 611 KRKCLPNLYTYSSLI 625



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+VTY+T+I+GLC EG VD+A ++  +M ++ I P V TY   I   C      EA 
Sbjct: 264 CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAI 323

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M  RG + +V T+  ++  L +  K++ A  L   M++ G+ P      N V Y 
Sbjct: 324 ELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVP------NTVTYN 377

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+ LC  G+   A ++   +   G + N  TYN  I  LC    ++KA  LF  M   
Sbjct: 378 ALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM 437

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G  P  V + TL+  ++ K   +    LL  M +    P
Sbjct: 438 GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEP 476



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 29/247 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T+NT+I+ L K+G V +A+ +  Q+   +++P+V TY SLI G C   + + A  
Sbjct: 195 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 254

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           +F  M+  G   + VT++ +++ LC   ++DEA  +L+ MI+ G+ P  +          
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              C  N+  Y  LI GL ++GKL+ A  L   + + GL+PN V
Sbjct: 315 AIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTV 374

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  I+ LC   +   A  +F  ME  G   N   +  ++       +  K + L   M
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 224 DKRNVMP 230
            K   +P
Sbjct: 435 LKMGPLP 441



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 6/211 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           NT++  L K   V+ A+ L+ QM +  I P+++T+N+LI+         EAE +  ++  
Sbjct: 167 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 226

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
             L  DV T+  ++   C+NR +D A  + D M++ G      C+ N V Y  LI+GLC 
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEG------CDPNSVTYSTLINGLCN 280

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G++  A ++ + +   G+ P V TY + I ALC  E  ++A +L   M+ +G  PN   
Sbjct: 281 EGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQT 340

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +T L+    R  +    I L   M K  ++P
Sbjct: 341 YTALISGLSRLGKLEVAIGLYHKMLKEGLVP 371



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           E+   G    + + N ++ +L K   ++ A  L   M+  G++P      +++ +  LI+
Sbjct: 153 EISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQP------SLLTFNTLIN 206

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
            L K GK++ A  +   + +  L P+V TY   I   C +  +D A  +F  M  +G  P
Sbjct: 207 ILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDP 266

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           N V ++TL+     +    + +++L  M ++ + P
Sbjct: 267 NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 50/274 (18%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQM-------------------KDENIN--PNVVTYN 55
           V+YNT+I+G CK G  DKAK L  ++                   KD+N+N   +++TY 
Sbjct: 183 VSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYT 242

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           ++I  +C  +   EA  L+ EM+  G   DVVT++ I++ LCK+ ++ EA  LL  M + 
Sbjct: 243 TIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKM 302

Query: 116 GVRP-------------------DAF-CEINIVAYG---------CLIDGLCKIGKLKNA 146
           GV P                   +AF C+  +V  G          L+DGL K  K K A
Sbjct: 303 GVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEA 362

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
            ++ ++L++  L+PN +TY   I   C    M++   L  +ME K + PN + +++++  
Sbjct: 363 EDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIING 422

Query: 207 FIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + +K    + I +++ M  +N++P A + +I++D
Sbjct: 423 YTKKGILDEAINVMKKMLDQNIIPNAYVYAILID 456



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 132/274 (48%), Gaps = 31/274 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY++II+G  K+G +D+A  +  +M D+NI PN   Y  LI G+C A     A  L
Sbjct: 411 PNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDL 470

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA-------------------TRLLDLMIQ 114
           + EM   GL+ + V F+V+++ L + ++MDEA                   T L+D   +
Sbjct: 471 YNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFK 530

Query: 115 GGVRPDAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
            G    A              ++V Y  LI+GL + GK + A+ +   +   GL PN  T
Sbjct: 531 AGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQAT 589

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YNI I A C   ++D A +L+ +M+   + P+ +   TL+       E  K + +L  M 
Sbjct: 590 YNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMS 649

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258
              + P   I  ++++   K+  + N++ Q + Q
Sbjct: 650 VMGIHPNLVIHRVLLNASSKSGKA-NAVLQMHEQ 682



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 42/252 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS----------------- 56
           PN++TY  +IDG CK G +++ + L  +M++++INPNV+TY+S                 
Sbjct: 376 PNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINV 435

Query: 57  ------------------LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                             LI G+C A     A  L+ EM   GL+ + V F+V+++ L +
Sbjct: 436 MKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKR 495

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
            ++MDEA  LL  +   G+  D       V Y  L+DG  K GK   A  + + +T   +
Sbjct: 496 GKRMDEAEELLKDVTSRGLLLDH------VNYTSLMDGFFKAGKESAALNMVEEMTEKSI 549

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
             +VVTYN+ I+ L    + + A  ++  M   G+APN   +  ++ ++ ++ E    +E
Sbjct: 550 PFDVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALE 608

Query: 219 LLRSMDKRNVMP 230
           L   M    +MP
Sbjct: 609 LWNEMKSHKIMP 620



 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 15/246 (6%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T+T N ++ G C+ G     + +   +       +V+ +N+LI G+C A + + A  L 
Sbjct: 111 DTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLV 170

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAF----------- 122
             M   GL SD+V++N +++  CK  + D+A  LL  + +  GV+   F           
Sbjct: 171 ERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDD 230

Query: 123 ---CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
               E +++ Y  +I   CK   L+ AR L + +   G +P+VVTY+  ++ LC D ++ 
Sbjct: 231 NLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLS 290

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +A +L  +M+  GV PN V +TTL+ S  +     +       +  R +     + + +V
Sbjct: 291 EAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLV 350

Query: 240 DLLVKN 245
           D L K+
Sbjct: 351 DGLFKS 356



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY++I++GLCK+G + +A+EL  +MK   ++PN V Y +LI     A    EA   
Sbjct: 271 PDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFAC 330

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++ RG+  D+V    ++D L K+ K  EA  +   + +  + P      N + Y  L
Sbjct: 331 QSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIP------NSITYTAL 384

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK+G ++    L Q +    + PNV+TY+  I+       +D+A ++   M  + +
Sbjct: 385 IDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNI 444

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN  ++  L+  + +  +     +L   M    +     + +++ D+LV N
Sbjct: 445 IPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGL----KVNNVLFDVLVNN 492



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 27/251 (10%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TVTYNT+I G C+ G V++A      M  ++   + +T N L+ GFC        E + 
Sbjct: 76  DTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIM 135

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             ++  G   DV+ FN ++D  CK  +M  A  L++ M + G+  D      IV+Y  LI
Sbjct: 136 DNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSD------IVSYNTLI 189

Query: 135 DGLCKIGKLKNARELSQSLTRA---------------------GLMPNVVTYNITIHALC 173
           +G CK G+   A+ L   ++ +                      L  +++TY   I   C
Sbjct: 190 NGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYC 249

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
               +++A  L+ +M + G  P+ V +++++    +    S+  ELLR M K  V P   
Sbjct: 250 KQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHV 309

Query: 234 ILSIIVDLLVK 244
             + ++D L K
Sbjct: 310 AYTTLIDSLFK 320



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 8/237 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           +G  E G+   PN  TYN +I   CK+G +D A EL+ +MK   I P+ +T N+L+ G  
Sbjct: 576 SGMIEMGLA--PNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLS 633

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
            A +  +A  +  EM   G+  ++V   V+++   K+ K +   ++ + ++  G++    
Sbjct: 634 EAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLK---- 689

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
             IN  AY  LI   C++   K A  + + + R G + + VTYN  I   C    + KA 
Sbjct: 690 --INQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKAL 747

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             +  M  +GV+PN V +  L+   +     ++  EL   M +  + P AS    ++
Sbjct: 748 ATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLI 804



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 18/221 (8%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TVTYN +I G C+   V KA   + QM +E ++PN+VTYN L+ G   A    E + LF
Sbjct: 726 DTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELF 785

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M + GL  D  T++ ++    K     E+ RL   M+  G  P          Y  LI
Sbjct: 786 DKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKT------STYNVLI 839

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN-------DEQMDK-----AH 182
               K+GK+  AREL   +   G+ P+  TY+I I   CN       D  + K     A 
Sbjct: 840 SDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTDAK 899

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +L  +M  KG  P       +  +F R  +     +LL+ +
Sbjct: 900 NLITEMNDKGFVPCKSTIACISSTFARPGKMLDAEKLLKEI 940



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 119/253 (47%), Gaps = 30/253 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N ++   CK G +  A +L   +++ ++  + VTYN++I GFC     N+A   
Sbjct: 43  PNVYTHNVLVHAWCKMGNLILALDL---LRNVDVEVDTVTYNTVIWGFCQHGLVNQAFGF 99

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ +    D +T N+++   C+        R++D ++ GG   D      ++ +  L
Sbjct: 100 LSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKD------VIGFNTL 153

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EVKG 192
           IDG CK G++  A +L + + + GL+ ++V+YN  I+  C   + DKA  L  ++ E +G
Sbjct: 154 IDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRG 213

Query: 193 VA--------------------PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           V                      + + +TT++ ++ +++   +   L   M     +P  
Sbjct: 214 VKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDV 273

Query: 233 SILSIIVDLLVKN 245
              S IV+ L K+
Sbjct: 274 VTYSSIVNGLCKD 286



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 117/251 (46%), Gaps = 17/251 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+++T NT++ GL + G ++KA  +  +M    I+PN+V +  L++    +   N    +
Sbjct: 620 PSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQM 679

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +++D GL+ +   +N ++   C+ R   +AT +L  MI+ G   D       V Y  L
Sbjct: 680 HEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADT------VTYNAL 733

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+   +K A      +   G+ PN+VTYN+ +  L     M +  +LF  M+  G+
Sbjct: 734 IRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGL 793

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK--------- 244
            P+   + TL+  + +     + I L   M  +  +P  S  ++++    K         
Sbjct: 794 NPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARE 853

Query: 245 --NEISLNSIP 253
             NE+ +  +P
Sbjct: 854 LLNEMQVRGVP 864



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 108/207 (52%), Gaps = 7/207 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N V ++ +++ L +   +D+A+EL   +    +  + V Y SL+ GF  A   + A  
Sbjct: 480 KVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALN 539

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM ++ +  DVVT+NV+++ L ++ K  EA  +   MI+ G+ P      N   Y  
Sbjct: 540 MVEEMTEKSIPFDVVTYNVLINGLLEHGKY-EAKSVYSGMIEMGLAP------NQATYNI 592

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I   CK G+L NA EL   +    +MP+ +T N  +  L    +++KA ++  +M V G
Sbjct: 593 MIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMG 652

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIEL 219
           + PN VI   L+ +  +  + + V+++
Sbjct: 653 IHPNLVIHRVLLNASSKSGKANAVLQM 679



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 10/244 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V +  +++   K G  +   ++  Q+ D  +  N   YN+LI  FC      +A  +
Sbjct: 655 PNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSV 714

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+  G  +D VT+N ++   C++  + +A      M+  GV P      NIV Y  L
Sbjct: 715 LKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSP------NIVTYNLL 768

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GL   G +    EL   +   GL P+  TY+  I          ++  L+ +M  +G 
Sbjct: 769 LGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGF 828

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            P    +  L+  F +  +  +  ELL  M  R V P +S      D+L+    +L+  P
Sbjct: 829 VPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTY----DILICGWCNLSKHP 884

Query: 254 QFNR 257
             +R
Sbjct: 885 DLDR 888



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 14/146 (9%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+T+I G  K G   ++  L+ +M  +   P   TYN LI  F      ++A  L
Sbjct: 795 PDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQAREL 854

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---FCEINIVAY 130
             EM  RG+     T+++++   C   K  +    LD  ++   R DA     E+N   +
Sbjct: 855 LNEMQVRGVPPSSSTYDILICGWCNLSKHPD----LDRTLKKIYRTDAKNLITEMNDKGF 910

Query: 131 -------GCLIDGLCKIGKLKNAREL 149
                   C+     + GK+ +A +L
Sbjct: 911 VPCKSTIACISSTFARPGKMLDAEKL 936


>gi|218186396|gb|EEC68823.1| hypothetical protein OsI_37392 [Oryza sativa Indica Group]
          Length = 1370

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 6/240 (2%)

Query: 8    FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            +G  C P+ V YN +IDG C+ G + +   L  +M+ +   P +VTY SLI+      D 
Sbjct: 988  WGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDL 1047

Query: 68   NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             +   LF+EM  RG   +V  +N ++D LC  R   +A  +L  M   G  PD      I
Sbjct: 1048 EKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPD------I 1101

Query: 128  VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            + +  L+ GLC  G ++ A    +   R  L PN ++Y   IH  C   ++  A DL ++
Sbjct: 1102 ITFNTLMTGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVE 1161

Query: 188  MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
            M  +G  P+ V F  L+   +   + S+ + +   M +R V P  +I ++++  L K  +
Sbjct: 1162 MMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRM 1221



 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 108/219 (49%), Gaps = 6/219 (2%)

Query: 8    FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            F   C P+ +T+NT++ GLC EG V KA+    +     +NPN ++Y  LIHGFC   + 
Sbjct: 1093 FASGCDPDIITFNTLMTGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGEL 1152

Query: 68   NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
              A  L +EMM RG   DVVTF  ++  L    K+ EA  + + M +  V PD    +NI
Sbjct: 1153 MVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD----VNI 1208

Query: 128  VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
              Y  LI GLCK   L  A+ + + +    + P+   Y   I      E +  A  +F  
Sbjct: 1209 --YNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEF 1266

Query: 188  MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
            ME KGV P+ V    ++  + +    S+ I  + +M K+
Sbjct: 1267 MEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKQ 1305



 Score =  114 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 29/246 (11%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P  VTY ++I+ L K+G ++K   LFL+M+    +PNV  YNS+I   C      +A  +
Sbjct: 1029 PTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVI 1088

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC- 123
              +M   G   D++TFN +M  LC    + +A   L   I+  + P+          FC 
Sbjct: 1089 LKQMFASGCDPDIITFNTLMTGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCM 1148

Query: 124  -------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                 ++V +G LI GL   GK+  A  + + +T   + P+V  
Sbjct: 1149 RGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNI 1208

Query: 165  YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
            YN+ I  LC    +  A ++  +M  K V P+  ++ TL+  FIR        ++   M+
Sbjct: 1209 YNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME 1268

Query: 225  KRNVMP 230
             + V P
Sbjct: 1269 HKGVCP 1274



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 85   DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144
            +V   N ++  L + R+ D+  +L D M+      D +          L+ GLC   +++
Sbjct: 925  EVTHCNHLLKLLVEQRRWDDGRKLYDEMLGKDSGADNYSTC------VLVRGLCLERRVE 978

Query: 145  NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
               +L ++   AG +P+VV YN+ I   C    M +   L  +ME KG  P  V + +L+
Sbjct: 979  EGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLI 1038

Query: 205  PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
                +K +  K+  L   M KR   P   I + ++D L
Sbjct: 1039 NWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDAL 1076


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 8/222 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+G  C P+ VTYNT++  LCK   + + ++L LQMK+  + PN  TYN L+HG+C    
Sbjct: 239 EYG--CCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKW 296

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA  +   M  +G+  DV T+N ++  LC   K+DEA RL D M    + PD      
Sbjct: 297 LKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPD------ 350

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  LIDG  +      A +L + +   G+  N VT+NI I   C + ++D+A ++ +
Sbjct: 351 VVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMV 410

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            M   G +P+C  + T++  + +  + ++  +++  M ++ +
Sbjct: 411 KMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGL 452



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 9/219 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDK---AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           +PN +T NT+++ L +         ++E+F       + PNV T+N LIHG+C  N+  E
Sbjct: 170 RPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEE 229

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  +M + G   D VT+N ++  LCK  ++ +   LL  M   G+ P      N   
Sbjct: 230 ALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFP------NRNT 283

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L+ G CK+  LK A E+ + +T  G++P+V TYN  +  LC++ ++D+A  L   ME
Sbjct: 284 YNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKME 343

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
              + P+ V + TL+        +    +L+  M  R V
Sbjct: 344 SFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGV 382



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+IDG  +    D A +L  +MK   +  N VT+N +I  FC     +EA  +
Sbjct: 349 PDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNV 408

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            ++M++ G   D  T+N +++  CK  KM EA +++D M + G++ D F          L
Sbjct: 409 MVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTF------TLNTL 462

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  +C   +L +A  L+    + G + + VTY   I     DEQ D+A  L+ +M+  G+
Sbjct: 463 LHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGI 522

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
               + + T++       +T + ++ L  + ++ ++P  S  +II+
Sbjct: 523 VATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIII 568



 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N VT+N +I   C EG +D+A  + ++M +   +P+  TYN++I+G+C A    EA  
Sbjct: 383 KENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYK 442

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM  +GL+ D  T N ++  +C  +++D+A  L     + G   D       V YG 
Sbjct: 443 MMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDE------VTYGT 496

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G  K  +   A +L + +   G++  ++TYN  I  LC   + D+A D   ++  KG
Sbjct: 497 LIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKG 556

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+      ++  +  +    K  +    M + ++ P
Sbjct: 557 LVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKP 594



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 26/247 (10%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V  P+  T N II G C EG V+KA +   +M + ++ P++ T N L+ G C    
Sbjct: 554 EKGLV--PDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGM 611

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +   LF   + +G   D VT+N+I+   CK R++++A  L+  M    + PD +    
Sbjct: 612 LEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRY---- 667

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-------PNVVT----YNITIHALCND 175
              Y  ++ GL K G+ + A +L+      G         P + T    Y+  I +LC  
Sbjct: 668 --TYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQ 725

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK-------RNV 228
            +   A  LF   E KGV+ N   +  LM   +++ ++     LL  M         RN 
Sbjct: 726 GKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLKRRKSFTTTSLLPFMVSATIQFFDRNP 785

Query: 229 MPYASIL 235
           M YA IL
Sbjct: 786 MRYAHIL 792



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T+N +I G C +   ++A  L  QM +    P+ VTYN+++   C  +   +   
Sbjct: 208 QPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRD 267

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L ++M + GL  +  T+N+++   CK + + EA  +++LM   G+ PD +       Y  
Sbjct: 268 LLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVW------TYNT 321

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GLC  GK+  A  L   +    L+P+VVTYN  I         D A  L  +M+ +G
Sbjct: 322 MVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARG 381

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V  N V    ++  F  + +  +   ++  M +    P
Sbjct: 382 VKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSP 419



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +T T NT++  +C E  +D A  L ++ +      + VTY +LI G+      + A  
Sbjct: 453 KLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALK 512

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM + G+ + ++T+N I+  LC + K D+A   L+ +++ G+ PD     NI+    
Sbjct: 513 LWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTS-NII---- 567

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I G C  G ++ A +    +    L P++ T NI +  LC +  ++K   LF     KG
Sbjct: 568 -IHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKG 626

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + V +  ++ SF ++       +L+  M+ +N+ P     + IV  L K
Sbjct: 627 KPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTK 678



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 104/209 (49%), Gaps = 9/209 (4%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE---AEYLFIEMMDRGLQSDVVTFNV 91
             ++F +MK     PN++T N+L++    +N  +    +  +F + +  G+Q +V TFN+
Sbjct: 157 GHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNI 216

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           ++   C +   +EA RL++ M + G  PD       V Y  ++  LCK  +L   R+L  
Sbjct: 217 LIHGYCSDNNTEEALRLINQMGEYGCCPDN------VTYNTVLTALCKRSQLTQVRDLLL 270

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +  +GL PN  TYNI +H  C  + + +A ++   M  KG+ P+   + T++     + 
Sbjct: 271 QMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEG 330

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +  + + L   M+   ++P     + ++D
Sbjct: 331 KIDEAVRLRDKMESFKLVPDVVTYNTLID 359


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T   I+ G CKEG + +A     +MK+  I+PN+V +NSLI GF    D +  + 
Sbjct: 221 QPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDE 280

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G++ DV+TF+ IM+       M++   + D M++ G+ PDA       AY  
Sbjct: 281 VLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAH------AYSI 334

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L  G  +  + + A EL  ++ ++G  PNVV +   I   C+  +MD A  +F  M  +G
Sbjct: 335 LAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRG 394

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           ++PN   F TL+  F    +  K  E+L+ M +  V P  S + ++ +
Sbjct: 395 ISPNLKTFETLIWGFAEARQPWKAEEILQIMTEFEVQPEKSTMLLVAE 442



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TYN ++   C +  + +A  +  +M    I P+VVTYN++   +      ++AE 
Sbjct: 151 KPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEG 210

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           + +EM + G+Q +  T  +IM   CK  ++ EA R    M + G+ P      N+V +  
Sbjct: 211 VILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHP------NLVIFNS 264

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G   I       E+   +   G+ P+V+T++  ++A      M+K  ++F DM   G
Sbjct: 265 LIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAG 324

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+   ++ L   ++R  E  K  ELL +M K    P   I + ++ 
Sbjct: 325 IEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVIS 372



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 7/228 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+++ +N +I+   + G ++ A E F +M++  + P   TYN+LI G+  A    E+  L
Sbjct: 81  PDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKL 140

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              M   G ++ ++ T+NV++   C  +++ EA  ++  MI  G++PD      +V Y  
Sbjct: 141 LELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPD------VVTYNT 194

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +     + G L  A  +   +   G+ PN  T  I +   C + ++ +A      M+  G
Sbjct: 195 IATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELG 254

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + PN VIF +L+  F+   +   V E+L  M++  V P     S I++
Sbjct: 255 IHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMN 302



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 110/232 (47%), Gaps = 7/232 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ ++Y T++  L  +   D    +  Q+++  +NP+ + +N++I+ F  + +   A  
Sbjct: 45  KPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAME 104

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYG 131
            F +M + G++    T+N ++       K +E+ +LL+LM Q G V+P      N+  Y 
Sbjct: 105 TFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKP------NLRTYN 158

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C   ++  A  +   +  +G+ P+VVTYN    A      +D+A  + L+M+  
Sbjct: 159 VLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNN 218

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           GV PN      +M  + ++    + +     M +  + P   I + ++   V
Sbjct: 219 GVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFV 270



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EFGV  KP+ +T++TI++     GF++K +E+F  M    I P+   Y+ L  G+  A +
Sbjct: 287 EFGV--KPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQE 344

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +AE L   M+  G Q +VV F  ++   C   KMD A R+ D M Q G+ P      N
Sbjct: 345 PEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISP------N 398

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           +  +  LI G  +  +   A E+ Q +T   + P   T
Sbjct: 399 LKTFETLIWGFAEARQPWKAEEILQIMTEFEVQPEKST 436



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 104/220 (47%), Gaps = 7/220 (3%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           +++ L ++G   +A+ +F  + +    P++++Y +L+         +    +  ++ + G
Sbjct: 19  LMNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENG 78

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
           +  D + FN +++   ++  M+ A      M + G++P          Y  LI G    G
Sbjct: 79  MNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKP------TTSTYNTLIKGYGIAG 132

Query: 142 KLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           K + + +L + +++ G + PN+ TYN+ + A CN +++ +A ++   M   G+ P+ V +
Sbjct: 133 KPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTY 192

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            T+  ++ +K    +   ++  M    V P      II+ 
Sbjct: 193 NTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMS 232



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V + T+I G C  G +D A  +F +M    I+PN+ T+ +LI GF  A    +AE 
Sbjct: 361 QPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEE 420

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           +   M +  +Q +  T  ++ +         EA RLL
Sbjct: 421 ILQIMTEFEVQPEKSTMLLVAEAWRATGMTKEANRLL 457


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 16/238 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYANDGNE 69
           C P+ VTYNT++DGLC+ G V  A  +   M  K  N++PNVVTY +LI G+C   D  E
Sbjct: 338 CDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAE 397

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIV 128
           A  L  EM+ RGL+ + +T+N ++  LC+ +K+D+   +L+ M+  GG  PD  C +N  
Sbjct: 398 ALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT-CTLNT- 455

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
               LI   C +GKL+ A  + + ++   + P+  TY++ + +LC      +A + F ++
Sbjct: 456 ----LIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDEL 511

Query: 189 EVK-------GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             K       G  P    +  +        +T K   + R + KR      S  ++I+
Sbjct: 512 AEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLIL 569



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 8/239 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYA 64
           +E GV   P+ VT+N+++  + K G    AK+LF +M D   + P+  T+N LI GFC  
Sbjct: 263 KEIGV--SPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMN 320

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +  +E  + F EM       DVVT+N ++D LC+  K+  A  +    ++G V+      
Sbjct: 321 SMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNV----VKGMVKKSPNLS 376

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V Y  LI G C    +  A  L   +   GL PN +TYN  I  LC  +++DK  ++
Sbjct: 377 PNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEI 436

Query: 185 FLDM-EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              M    G  P+     TL+ +     +  +   +   M +  V P ++  S++V  L
Sbjct: 437 LEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSL 495



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 11/225 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +GV   P+T T+N +I G C    VD+    F +M     +P+VVTYN+L+ G C A   
Sbjct: 301 YGVT--PDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 358

Query: 68  NEAEYLFIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             A  +   M+ +   L  +VVT+  ++   C  + M EA  LL  M+  G++P      
Sbjct: 359 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKP------ 412

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           N + Y  LI GLC+  KL   +E+ + +    G +P+  T N  I A C   ++++A  +
Sbjct: 413 NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSV 472

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           F  M    V P+   ++ L+ S  ++ +  +  E    + ++ ++
Sbjct: 473 FEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEIL 517



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 100/199 (50%), Gaps = 10/199 (5%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDV 86
           K G  +  K +F  MK+  ++P+VVT+NSL+         + A+ LF EM+D  G+  D 
Sbjct: 249 KSGGAESIK-VFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDT 307

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
            TFN+++   C N  +DE       M +    PD      +V Y  L+DGLC+ GK+K A
Sbjct: 308 YTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPD------VVTYNTLVDGLCRAGKVKIA 361

Query: 147 RELSQSLTRAG--LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
             + + + +    L PNVVTY   I   C  + M +A  L  +M  +G+ PN + + TL+
Sbjct: 362 HNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLI 421

Query: 205 PSFIRKNETSKVIELLRSM 223
                  +  K+ E+L  M
Sbjct: 422 QGLCEAQKLDKIKEILEGM 440



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 93/234 (39%), Gaps = 36/234 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KPN +TYNT+I GLC+   +DK KE+   M  D    P+  T N+LI   C      EA 
Sbjct: 411 KPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAF 470

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR-PDAFCEINIVAY 130
            +F +M +  +Q D  T++V++  LC+      A    D + +  +   D  C+  + AY
Sbjct: 471 SVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAY 530

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAG--------------------------------- 157
             + + LC  GK K A  + + L + G                                 
Sbjct: 531 NPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRR 590

Query: 158 -LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
             +P+  TY + I  L        AH     M      P   IF +++ + + K
Sbjct: 591 DFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEK 644



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGN 68
           V CKP    YN + + LC  G   KA+ +F Q MK    +P   +Y +LI G C      
Sbjct: 521 VGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPP--SYKTLILGHCREGTPE 578

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
               L + M+ R    D  T+ +++D L K      A + L+ M++    P      +I+
Sbjct: 579 AGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSIL 638

Query: 129 A 129
           A
Sbjct: 639 A 639



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 12/188 (6%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           +Y T+I G C+EG  +   +L + M   +  P+  TY  +I G     D   A     +M
Sbjct: 563 SYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKM 622

Query: 78  MDRGLQSDVVTFNVIMDELCKNRK-----MDEATRLLDLMIQGGVRPDAFCEIN------ 126
           +          F+ I+  L +  +     +D +T  + L+ + G++  AF  I       
Sbjct: 623 LKSSHLPTTAIFHSILAALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENG 682

Query: 127 -IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V    L+  LC+  KL  A+++           ++   +  I  LC   ++ +A  L+
Sbjct: 683 YLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALY 742

Query: 186 LDMEVKGV 193
            ++  KG+
Sbjct: 743 YELVEKGM 750


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N + +NT+IDG C++G VD A ++   M+   +  ++ TYN+L  G C  N  +EA+ L 
Sbjct: 142 NQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLL 201

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M++ G+  + VT+  ++   CK+  M EA RL   M + G  P      ++V Y  +I
Sbjct: 202 HIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATP------SVVTYNVMI 255

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G  K G ++ A    + + + G +P+V TY   +H  C + ++D A  LF +M+ +G  
Sbjct: 256 HGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTE 315

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           PN V +T L+    ++  +    +L   M K  ++P  S+ S +V  L
Sbjct: 316 PNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 363



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 10/228 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TY  +I+G CK G ++ A+ L   M+ + +  N + +N++I G+C     ++A  
Sbjct: 105 EPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALK 164

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M   G++ D+ T+N +   LC+  ++DEA  LL +MI+ GV P      N V Y  
Sbjct: 165 IKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVP------NYVTYTT 218

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   CK G +  AR L + +   G  P+VVTYN+ IH       + +A     +ME KG
Sbjct: 219 LISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKG 278

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
             P+   + +L+       +    ++L   M +R    NV+ Y +++S
Sbjct: 279 FVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALIS 326



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 8/173 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GVV  PN VTY T+I   CK+G + +A+ LF +M ++   P+VVTYN +IHG+     
Sbjct: 206 EMGVV--PNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGS 263

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EAE    EM  +G   DV T+  ++   C N K+D A +L + M Q G  P      N
Sbjct: 264 IREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEP------N 317

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           +VAY  LI GL K G+ + A +L   + +AGL+P+   Y+  + +L  D + D
Sbjct: 318 VVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKD 370



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 6/194 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TYNT+  GLC+   +D+AK L   M +  + PN VTY +LI   C   D  EA  LF EM
Sbjct: 180 TYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREM 239

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            ++G    VVT+NV++    K   + EA R    M + G  PD +       Y  L+ G 
Sbjct: 240 AEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVY------TYASLVHGH 293

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  GK+  A +L + + + G  PNVV Y   I  L  + + + A  L+ DM   G+ P+ 
Sbjct: 294 CVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDD 353

Query: 198 VIFTTLMPSFIRKN 211
            +++ L+ S    N
Sbjct: 354 SLYSALVGSLHTDN 367



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 38/274 (13%)

Query: 14  PNTVT---YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA---NDG 67
           P +V+    + ++DGLCK G VD A+ L   M    ++ N + YNSL+   CY    +DG
Sbjct: 9   PGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLD--CYVRQKDDG 66

Query: 68  NEAEYLFI-----------------------EMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
              E L I                       E +  G++ +  T+ V+++  CK  +M+ 
Sbjct: 67  RVQEILEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEA 126

Query: 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           A  LL  M   GV       +N + +  +IDG C+ G + +A ++  ++ + G+  ++ T
Sbjct: 127 AEMLLADMQGQGV------GLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYT 180

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN     LC   ++D+A  L   M   GV PN V +TTL+    +  +  +   L R M 
Sbjct: 181 YNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMA 240

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258
           ++   P     ++++    K   S+    +F ++
Sbjct: 241 EKGATPSVVTYNVMIHGYAKKG-SIREAERFRKE 273


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 129/231 (55%), Gaps = 7/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           ++ ++N +I GLC+ G VDKA ELF +M+    +P+V+TYN+LI+GFC  N+ +    L 
Sbjct: 236 DSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLL 295

Query: 75  IEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            E++ +  L  DVVT+  I+   CK  KM++A+ L + MI  G++P+AF       +  L
Sbjct: 296 KELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAF------TFNIL 349

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G  K+G + +A  + + +   G  P+++T+   I   C   +++++  L+ ++  + +
Sbjct: 350 INGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNL 409

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +PN   F  L  +  ++N   +    LR +  R+++    + + ++D   K
Sbjct: 410 SPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCK 460



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 132/257 (51%), Gaps = 11/257 (4%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN-INPNVVTYNSLIHGF 61
           N  R FG  C P+ +TYNT+I+G C+   VD+  +L  ++  +N ++P+VVTY S+I G+
Sbjct: 261 NEMRGFG--CSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGY 318

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           C      +A  LF  M+  G++ +  TFN++++   K   M  A  + + M+  G  PD 
Sbjct: 319 CKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPD- 377

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                I+ +  LIDG C+ GK++ + +L   L    L PN  T+ I  +ALC + ++ +A
Sbjct: 378 -----IITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEA 432

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI-IVD 240
                D++ + +     ++  ++  F +     +   +L  M+++   P     +I I+ 
Sbjct: 433 RGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIG 492

Query: 241 LLVKNEISLNSIPQFNR 257
             +K  +S  +I  FNR
Sbjct: 493 HCMKGRLS-EAISIFNR 508



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ VTY +II G CK G ++KA  LF  M    I PN  T+N LI+GF    D   AE 
Sbjct: 305 SPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAEN 364

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ EM+  G   D++TF  ++D  C+  K++ + +L   +    + P+ +       +  
Sbjct: 365 MYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEY------TFAI 418

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L + LCK  +L  AR   + L    ++     YN  I   C    +D+A+ +  +ME K 
Sbjct: 419 LTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKR 478

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+ + +T L+     K   S+ I +   M      P +  ++ ++  L+K
Sbjct: 479 CKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLK 530



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 30/225 (13%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
           ++V YN L++     N  +EA   F E M      D  +FN+++  LC+  K+D+A  L 
Sbjct: 201 SLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELF 260

Query: 110 DLMIQGGVRPD---------AFCEIN---------------------IVAYGCLIDGLCK 139
           + M   G  PD          FC +N                     +V Y  +I G CK
Sbjct: 261 NEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCK 320

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           +GK++ A  L  ++  +G+ PN  T+NI I+       M  A +++ +M + G  P+ + 
Sbjct: 321 LGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIIT 380

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           FT+L+    R  +  + ++L   ++ RN+ P     +I+ + L K
Sbjct: 381 FTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCK 425



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 18/227 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  T+N +I+G  K G +  A+ ++ +M      P+++T+ SLI G C       +  
Sbjct: 340 KPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLK 399

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ E+  R L  +  TF ++ + LCK  ++ EA   L  +    +    F       Y  
Sbjct: 400 LWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPF------MYNP 453

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG CK G +  A  +   +      P+ +TY I I   C   ++ +A  +F  M   G
Sbjct: 454 VIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTG 513

Query: 193 VAPNCVIFTTLMPSFIRK---NETSKVIEL--------LRSMDKRNV 228
            AP+ +  T+L+   ++    NE  +++++        L+S+ KRNV
Sbjct: 514 CAPDSITMTSLISCLLKAGMPNEAYRIMQIASEDFNLGLKSL-KRNV 559



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +T+ ++IDG C+ G V+++ +L+ ++   N++PN  T+  L +  C  N  +EA 
Sbjct: 374 CPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEAR 433

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               ++  R + +    +N ++D  CK   +DEA  +L  M +   +PD       + Y 
Sbjct: 434 GFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDK------ITYT 487

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            LI G C  G+L  A  +   +   G  P+ +T    I  L      ++A+ +
Sbjct: 488 ILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEAYRI 540


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + T+IDG CK     +AK +FL+M    + P V  YNSL+ G   + +  EA  L
Sbjct: 289 PNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALAL 348

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM   GL  D  T ++++  LC   +M  A R L  + + GV       +N  AY  L
Sbjct: 349 YQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGV------NLNAAAYNAL 402

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  C+IG L+ A      +T  G+ PNVV+Y+  I       +M  A  ++ +M  KG+
Sbjct: 403 IDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGI 462

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN V +T L+    +         L + M +  + P A  +S++VD L +
Sbjct: 463 EPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCR 513



 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T+I  LC+EG +  A+ LF  MK+  + PN  TYN L+ G C  +D N A  L
Sbjct: 219 PNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVL 278

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + E++  GL  + V F  ++D  CK ++  EA  +   M + GV P       +  Y  L
Sbjct: 279 YQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAP------TVPVYNSL 332

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  + G  + A  L Q +TR GL P+  T +I +  LC+  QM  A      ++  GV
Sbjct: 333 MDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGV 392

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             N   +  L+  + R     + +     M +  + P     S ++D
Sbjct: 393 NLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLID 439



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P     N ++DGL K      A ELF +M    + P+VVTYN+LI+   +     +A+ +
Sbjct: 149 PALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEV 208

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+ + +  +VVT+  ++  LC+   + +A RL D M + G++P+ +       Y  L
Sbjct: 209 WDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQY------TYNVL 262

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G C+   + +A  L Q L ++GL PN V +   I   C  ++  +A  +FL+M   GV
Sbjct: 263 MSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGV 322

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           AP   ++ +LM    R     + + L + M +  + P     SI+V
Sbjct: 323 APTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVV 368



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 9/219 (4%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           ++  L + G +D+A  +F +++     P +   N+++ G   A     A  LF EM+ RG
Sbjct: 125 LVIALSQMGLLDEALYVFRRLRTL---PALPACNAVLDGLVKARRPGCAWELFDEMLRRG 181

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
           L   VVT+N +++       + +A  + D M+   + P      N+V Y  +I  LC+ G
Sbjct: 182 LVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDP------NVVTYTTMICALCEEG 235

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
            + +A  L  ++  AG+ PN  TYN+ +   C  + ++ A  L+ ++   G+ PN VIFT
Sbjct: 236 CIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFT 295

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           TL+  F +    S+   +   M +  V P   + + ++D
Sbjct: 296 TLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMD 334



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 17/210 (8%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +A   R   V  +PN V+Y+++IDG  K G +  A  ++ +M  + I PNVVTY +LIHG
Sbjct: 416 LATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHG 475

Query: 61  FCYANDGNEAEY-LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
               N G +A + L  EM++ G+  + +T +V++D LC+  ++ EA R   +M   G++ 
Sbjct: 476 HA-KNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRF--VMEYSGLKC 532

Query: 120 DAFCEI-------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
                +             N V Y  LI GL   G+   A +L   + ++G++P+  TY 
Sbjct: 533 SDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYT 592

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           + I   C    +  A  L+ DM   GV P 
Sbjct: 593 LLIRGQCMLGYVLNAMMLYADMMKIGVKPT 622



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 23/207 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   YN +ID  C+ G +++A     +M +  I PNVV+Y+SLI G         A  ++
Sbjct: 395 NAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIY 454

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM+ +G++ +VVT+  ++    KN  +D A RL   MI+ G+ P+A      +    L+
Sbjct: 455 TEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNA------ITVSVLV 508

Query: 135 DGLCKIGKLKNARELSQ-----------------SLTRAGLMPNVVTYNITIHALCNDEQ 177
           DGLC+  +++ A                      ++    L+PN V Y   I+ L  D Q
Sbjct: 509 DGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQ 568

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLM 204
             +A  LF  M   G+ P+   +T L+
Sbjct: 569 HCEAGKLFSYMRKSGMIPDSFTYTLLI 595



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQ-----------------MKDENINPNVVTYN 55
            PN +T + ++DGLC+E  V +A    ++                 +++E + PN V Y 
Sbjct: 498 SPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYM 557

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           +LI+G        EA  LF  M   G+  D  T+ +++   C    +  A  L   M++ 
Sbjct: 558 TLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKI 617

Query: 116 GVRPDAF 122
           GV+P  +
Sbjct: 618 GVKPTRY 624


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY   I G  +      A +   +M++  + PN V    LI+ +C      EA  
Sbjct: 519 KPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACS 578

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M+D+G+  D  T+ V+M+ L KN K+D+A  +   M   G+ PD F      +YG 
Sbjct: 579 AYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVF------SYGV 632

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  K+G ++ A  +   +   GL PNV+ YN+ +   C   +++KA +L  +M VKG
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + PN V + T++  + +  + ++   L   M  + ++P + + + +VD
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 129/272 (47%), Gaps = 34/272 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  +I+G  K G + KA  +F +M +E + PNV+ YN L+ GFC + +  +A+ L
Sbjct: 625 PDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL 684

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
             EM  +GL  + VT+  I+D  CK+  + EA RL D M   G+ PD+F           
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744

Query: 123 -----------------CEINIVAYGCLIDGLCKIGK--LKNA---RELSQSLTRAGLMP 160
                            C  +   +  LI+ + K GK  LK     R +  S  R G  P
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG-KP 803

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           N VTYNI I  LC +  ++ A +LF  M+   + P  + +T+L+  + +    +++  + 
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
                  + P   + S+I++  +K  ++  ++
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 125/258 (48%), Gaps = 36/258 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YN ++ G C+ G ++KAKEL  +M  + ++PN VTY ++I G+C + D  EA  L
Sbjct: 660 PNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRL 719

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA---------------------------- 105
           F EM  +GL  D   +  ++D  C+   ++ A                            
Sbjct: 720 FDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKF 779

Query: 106 ------TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
                 T +L+ ++ G    D F + N V Y  +ID LCK G L+ A+EL   +  A LM
Sbjct: 780 GKTELKTEVLNRLMDGSF--DRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM 837

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P V+TY   ++      +  +   +F +    G+ P+ ++++ ++ +F+++  T+K + L
Sbjct: 838 PTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVL 897

Query: 220 LRSMDKRNVMPYASILSI 237
           +  M  +N +     LSI
Sbjct: 898 VDQMFAKNAVDDGCKLSI 915



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN++I GL K   +D+A+   ++M +  + PN  TY + I G+  A++   A+  
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + G+  + V    +++E CK  K+ EA      M+  G+  DA        Y  L
Sbjct: 545 VKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDA------KTYTVL 598

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GL K  K+ +A E+ + +   G+ P+V +Y + I+       M KA  +F +M  +G+
Sbjct: 599 MNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL 658

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN +I+  L+  F R  E  K  ELL  M  + + P A     I+D
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIID 705



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    Y ++I+G C+E  V +  EL ++MK  NI  +  TY +++ G C + D + A  +
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNI 439

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G + +VV +  ++    +N +  +A R+L  M + G+ PD FC      Y  L
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC------YNSL 493

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL K  ++  AR     +   GL PN  TY   I       +   A     +M   GV
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN V+ T L+  + +K +  +     RSM  + ++  A   +++++ L KN+
Sbjct: 554 LPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY  +++GL K   VD A+E+F +M+ + I P+V +Y  LI+GF    +  +A  +F EM
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++ GL  +V+ +N+++   C++ ++++A  LLD M   G+ P+A      V Y  +IDG 
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNA------VTYCTIIDGY 707

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G L  A  L   +   GL+P+   Y   +   C    +++A  +F     KG A + 
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASST 766

Query: 198 VIFTTLMPSFIRKNETSKVIELL-RSMD---KRNVMPYASILSIIVDLLVK 244
             F  L+    +  +T    E+L R MD    R   P     +I++D L K
Sbjct: 767 APFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 9/224 (4%)

Query: 10  VVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           ++CK   P   TY+ +IDGLCK   ++ AK L ++M    ++ +  TY+ LI G     +
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A+ L  EM+  G+      ++  +  + K   M++A  L D MI  G+ P A     
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQA----- 382

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             AY  LI+G C+   ++   EL   + +  ++ +  TY   +  +C+   +D A+++  
Sbjct: 383 -QAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVK 441

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +M   G  PN VI+TTL+ +F++ +     + +L+ M ++ + P
Sbjct: 442 EMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 8/222 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  KP    Y+  I  + KEG ++KAK LF  M    + P    Y SLI G+C   +  
Sbjct: 342 GINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVR 399

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +   L +EM  R +     T+  ++  +C +  +D A  ++  MI  G RP      N+V
Sbjct: 400 QGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP------NVV 453

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI    +  +  +A  + + +   G+ P++  YN  I  L   ++MD+A    ++M
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              G+ PN   +   +  +I  +E +   + ++ M +  V+P
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLP 555



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 5/163 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN +ID LCKEG ++ AKELF QM++ N+ P V+TY SL++G  Y   G  AE 
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG--YDKMGRRAEM 859

Query: 73  --LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F E +  G++ D + ++VI++   K     +A  L+D M       D  C+++I   
Sbjct: 860 FPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDG-CKLSISTC 918

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             L+ G  K+G+++ A ++ +++ R   +P+  T    I+  C
Sbjct: 919 RALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 29/246 (11%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND-- 66
           G+   P       ++D L +   +D   +++  M + N+  +V TY+ LI   C A +  
Sbjct: 179 GLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQ 238

Query: 67  -------GNEAEY------------LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
                    E E+            L   M+ +GL     T++V++D LCK +++++A  
Sbjct: 239 LGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKS 298

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           LL  M   GV  D         Y  LIDGL K      A+ L   +   G+      Y+ 
Sbjct: 299 LLVEMDSLGVSLDNH------TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDC 352

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I  +  +  M+KA  LF  M   G+ P    + +L+  + R+    +  ELL  M KRN
Sbjct: 353 CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRN 412

Query: 228 VM--PY 231
           ++  PY
Sbjct: 413 IVISPY 418


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 10/220 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + VTY T+I GLC    +D A EL  +M    ++PNV+ Y+ L+ G+C +    +   
Sbjct: 147 RADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSK 206

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM   G++ DV+ F   +D+LCK  ++ +A ++ D+M+Q G+ P      N+V Y  
Sbjct: 207 VFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEP------NVVTYNV 260

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+ LCK G ++ A  L   +   G+ P+VVTYN  I  L    +MD A  L  +M ++G
Sbjct: 261 LINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEM-IQG 319

Query: 193 ---VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
              V P+ V F +++    +     + I +   M +R  M
Sbjct: 320 DTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCM 359



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +A+ +RE     +PN V+Y  ++ GLC     D+A  L   M+   +  +VVTY +LI G
Sbjct: 100 LADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRG 159

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C A + + A  L  EM   G+  +V+ ++ ++   C++ +  + +++ + M + GV PD
Sbjct: 160 LCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPD 219

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                 ++ +   ID LCK G++  A ++   + + GL PNVVTYN+ I+ LC +  + +
Sbjct: 220 ------VIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVRE 273

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           A  L  +M+ KGVAP+ V + TL+       E    + LL  M
Sbjct: 274 ALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEM 316



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 116/216 (53%), Gaps = 4/216 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ + +   ID LCK+G + KA ++   M    + PNVVTYN LI+  C      EA  
Sbjct: 217 EPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALA 276

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM D+G+  DVVT+N ++  L    +MD A  LL+ MIQG    D   E ++V +  
Sbjct: 277 LRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQG----DTLVEPDVVTFNS 332

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I GLCKIG+++ A  + + +   G M N+VTYN  I       +++ A +L  ++   G
Sbjct: 333 VIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSG 392

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           + P+   ++ L+  F +  E  +    LR+M +R +
Sbjct: 393 LEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGI 428



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 28/244 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT+N++I GLCK G + +A  +   M +     N+VTYN LI GF   +  N A  
Sbjct: 324 EPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMN 383

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           L  E++  GL+ D  T++++++   K  ++D A   L  M Q G+R + F          
Sbjct: 384 LMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALC 443

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             C ++ VAY  ++ G CK G +K A++L Q +   GL P+ VT
Sbjct: 444 QLGMMEQAMVLFNEMDMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVT 503

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+I I+       +++A  +   M   G  P+  +F +L+  +  + + +K+++L+  M 
Sbjct: 504 YSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMR 563

Query: 225 KRNV 228
            +NV
Sbjct: 564 AKNV 567



 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 110/220 (50%), Gaps = 10/220 (4%)

Query: 15  NTVTYNTIIDGLCKEGF-VDKAKELFLQMKDEN---INPNVVTYNSLIHGFCYANDGNEA 70
           + V+YN ++  LC+ G  + +A  L   M  E      PN V+Y  ++ G C +   +EA
Sbjct: 75  DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L   M   G+++DVVT+  ++  LC   ++D A  LL  M   GV P      N++ Y
Sbjct: 135 VALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHP------NVIVY 188

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
            CL+ G C+ G+ ++  ++ + ++R G+ P+V+ +   I  LC   ++ KA  +   M  
Sbjct: 189 SCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQ 248

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +G+ PN V +  L+    ++    + + L   MD + V P
Sbjct: 249 RGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAP 288



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 10/199 (5%)

Query: 50  NVVTYNSLIHGFCY-ANDGNEAEYLFIEMMDRG---LQSDVVTFNVIMDELCKNRKMDEA 105
           + V+YN ++   C    D  +A  L  +M        + + V++ ++M  LC +R+ DEA
Sbjct: 75  DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
             LL  M   GVR D      +V YG LI GLC   +L  A EL   +  +G+ PNV+ Y
Sbjct: 135 VALLRSMQASGVRAD------VVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVY 188

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           +  +   C   +      +F +M   GV P+ ++FT  +    +K    K +++   M +
Sbjct: 189 SCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQ 248

Query: 226 RNVMPYASILSIIVDLLVK 244
           R + P     +++++ L K
Sbjct: 249 RGLEPNVVTYNVLINCLCK 267



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 5/102 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V Y+T++ G CK G +  AK+L   M DE + P+ VTY+ LI+ F    D  EAE
Sbjct: 462 CGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAE 521

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD-EATRLLDLM 112
            +  +M   G   DV  F    D L K    + +  ++LDL+
Sbjct: 522 RVLKQMAASGFVPDVAVF----DSLIKGYSAEGQINKILDLI 559


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 16/238 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYANDGNE 69
           C P+ VTYNT++DGLC+ G V  A  +   M  K  N++PNVVTY +LI G+C   D  E
Sbjct: 267 CDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAE 326

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIV 128
           A  L  EM+ RGL+ + +T+N ++  LC+ +K+D+   +L+ M+  GG  PD  C +N  
Sbjct: 327 ALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT-CTLNT- 384

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
               LI   C +GKL+ A  + + ++   + P+  TY++ + +LC      +A + F ++
Sbjct: 385 ----LIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDEL 440

Query: 189 EVK-------GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             K       G  P    +  +        +T K   + R + KR      S  ++I+
Sbjct: 441 AEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLIL 498



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 8/239 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYA 64
           +E GV   P+ VT+N+++  + K G    AK+LF +M D   + P+  T+N LI GFC  
Sbjct: 192 KEIGV--SPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMN 249

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +  +E  + F EM       DVVT+N ++D LC+  K+  A  +    ++G V+      
Sbjct: 250 SMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNV----VKGMVKKSPNLS 305

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V Y  LI G C    +  A  L   +   GL PN +TYN  I  LC  +++DK  ++
Sbjct: 306 PNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEI 365

Query: 185 FLDM-EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              M    G  P+     TL+ +     +  +   +   M +  V P ++  S++V  L
Sbjct: 366 LEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSL 424



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 9/208 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N++I      G   ++ ++F  MK+  ++P+VVT+NSL+         + A+ LF EM+
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 79  DR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           D  G+  D  TFN+++   C N  +DE       M +    PD      +V Y  L+DGL
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPD------VVTYNTLVDGL 281

Query: 138 CKIGKLKNARELSQSLTRAG--LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           C+ GK+K A  + + + +    L PNVVTY   I   C  + M +A  L  +M  +G+ P
Sbjct: 282 CRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKP 341

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSM 223
           N + + TL+       +  K+ E+L  M
Sbjct: 342 NKITYNTLIQGLCEAQKLDKIKEILEGM 369



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 11/225 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +GV   P+T T+N +I G C    VD+    F +M     +P+VVTYN+L+ G C A   
Sbjct: 230 YGVT--PDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 68  NEAEYLFIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             A  +   M+ +   L  +VVT+  ++   C  + M EA  LL  M+  G++P      
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKP------ 341

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           N + Y  LI GLC+  KL   +E+ + +    G +P+  T N  I A C   ++++A  +
Sbjct: 342 NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSV 401

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           F  M    V P+   ++ L+ S  ++ +  +  E    + ++ ++
Sbjct: 402 FEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEIL 446



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 36/269 (13%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KPN +TYNT+I GLC+   +DK KE+   M  D    P+  T N+LI   C      EA 
Sbjct: 340 KPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAF 399

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR-PDAFCEINIVAY 130
            +F +M +  +Q D  T++V++  LC+      A    D + +  +   D  C+  + AY
Sbjct: 400 SVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAY 459

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAG--------------------------------- 157
             + + LC  GK K A  + + L + G                                 
Sbjct: 460 NPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRR 519

Query: 158 -LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
             +P+  TY + I  L        AH     M      P   IF +++ + + K    + 
Sbjct: 520 DFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHES 579

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKN 245
             L++ M +R +     + +  V LL K+
Sbjct: 580 ASLVKLMLERRIRQNIDLSTHTVRLLYKS 608



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGN 68
           V CKP    YN + + LC  G   KA+ +F Q MK    +P   +Y +LI G C      
Sbjct: 450 VGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPP--SYKTLILGHCREGTPE 507

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
               L + M+ R    D  T+ +++D L K      A + L+ M++    P      +I+
Sbjct: 508 AGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSIL 567

Query: 129 A 129
           A
Sbjct: 568 A 568



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 78/187 (41%), Gaps = 23/187 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +IDGL K+G    A +   +M   +  P    ++S++         +E+  L
Sbjct: 523 PDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASL 582

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN------- 126
              M++R ++ ++                D +T  + L+ + G++  AF  I        
Sbjct: 583 VKLMLERRIRQNI----------------DLSTHTVRLLYKSGLQDKAFMTIGLLYENGY 626

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V    L+  LC+  KL  A+++           ++   +  I  LC   ++ +A  L+ 
Sbjct: 627 LVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYY 686

Query: 187 DMEVKGV 193
           ++  KG+
Sbjct: 687 ELVEKGM 693


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 129/260 (49%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYN+I+DG  KEG V  A   + +M +  ++PNV+TY +LI+GFC  N+ + A  +
Sbjct: 591 PVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKM 650

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA---- 129
             EM ++GL+ D+  +  ++D  CK + ++ A+ L   ++ GG+ P++    ++++    
Sbjct: 651 RNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRN 710

Query: 130 -------------------------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                    Y  LIDGL K G+L  A +L   ++  G++P+++ 
Sbjct: 711 LNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIII 770

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y + I+ LC   Q++ A  +  +ME   + PN  I+  L+    +     +   L   M 
Sbjct: 771 YTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEML 830

Query: 225 KRNVMPYASILSIIVDLLVK 244
            + + P  +   I+++  +K
Sbjct: 831 DKGLTPNDTTYDILINGKIK 850



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 7/239 (2%)

Query: 9   GVVCK-PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            V C   N  TYN+++  LCKEG + +A  L+ +M D+ + P  V+YNS+I G C   + 
Sbjct: 445 AVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNL 504

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A  +F +M+D GL+ +V+T++++MD   KN   + A  + D M+   + P  F     
Sbjct: 505 DMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDF----- 559

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y   I+GLCK+G+   A+++ +     G +P  +TYN  +     +  +  A   + +
Sbjct: 560 -TYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYRE 618

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           M   GV+PN + +TTL+  F + N T   +++   M  + +    +    ++D   K +
Sbjct: 619 MCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQ 677



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 120/261 (45%), Gaps = 30/261 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  +I+  CK G + KA +L+ QMK++NI P V   NSLI GF       EA  L
Sbjct: 382 PNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKL 441

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-------------- 119
           F E +   + +++ T+N ++  LCK  KM EAT L   M+  G+ P              
Sbjct: 442 FDEAVACDI-ANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCR 500

Query: 120 ---------------DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                          D   + N++ Y  L+DG  K G  + A  +   +    ++P+  T
Sbjct: 501 QGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFT 560

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YNI I+ LC   +  +A D+      KG  P C+ + ++M  FI++   S  +   R M 
Sbjct: 561 YNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMC 620

Query: 225 KRNVMPYASILSIIVDLLVKN 245
           +  V P     + +++   KN
Sbjct: 621 ESGVSPNVITYTTLINGFCKN 641



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 121/259 (46%), Gaps = 29/259 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TY+ ++DG  K G  + A  +F +M DENI P+  TYN  I+G C     +EA+ 
Sbjct: 520 KPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQD 579

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +  + +++G     +T+N IMD   K   +  A      M + GV P         + FC
Sbjct: 580 MLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFC 639

Query: 124 --------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                               E++I AYG LIDG CK   ++ A  L   L   GL PN V
Sbjct: 640 KNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSV 699

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            YN  I    N   M+ A +L   M  +G++ +   +TTL+   +++      ++L   M
Sbjct: 700 IYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEM 759

Query: 224 DKRNVMPYASILSIIVDLL 242
             + ++P   I +++++ L
Sbjct: 760 SAKGIIPDIIIYTVLINGL 778



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V+YN++I G C++G +D A  +F  M D  + PNV+TY+ L+ G+    D   A Y+
Sbjct: 486 PTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYV 545

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+D  +     T+N+ ++ LCK  +  EA  +L   ++ G  P   C    + Y  +
Sbjct: 546 FDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVP--VC----LTYNSI 599

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K G + +A    + +  +G+ PNV+TY   I+  C +   D A  +  +M  KG+
Sbjct: 600 MDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGL 659

Query: 194 APNCVIFTTLMPSFIRKN--ETSKVI--ELLRSMDKRNVMPYASILS 236
             +   +  L+  F +K   ET+  +  ELL      N + Y S++S
Sbjct: 660 ELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLIS 706



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 9/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V   T++ G CK+  +  A E F +M +   +PN VTY  LI   C   +  +A  L+
Sbjct: 348 NVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLY 407

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI-NIVAYGCL 133
            +M ++ +   V   N ++    K    +EA++L D  +         C+I NI  Y  L
Sbjct: 408 TQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVA--------CDIANIFTYNSL 459

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  LCK GK+  A  L Q +   GL P  V+YN  I   C    +D A  +F DM   G+
Sbjct: 460 LSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGL 519

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN + ++ LM  + +  +T     +   M   N++P     +I ++ L K
Sbjct: 520 KPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCK 570



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 9/209 (4%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           ++AK+ FL+ K   +  +   Y+ +I  FC   D   A  L  +M D+G      TF  +
Sbjct: 261 EEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSV 320

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +    K   M EA RL D M+  GV      ++N+V    L+ G CK  KL +A E    
Sbjct: 321 IGACVKQGNMVEALRLKDEMVSCGV------QMNVVVATTLVKGYCKQDKLVSALEFFDK 374

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR--- 209
           +   G  PN VTY + I   C +  M KA+DL+  M+ K + P   I  +L+  F++   
Sbjct: 375 MNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVES 434

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSII 238
           + E SK+ +   + D  N+  Y S+LS +
Sbjct: 435 REEASKLFDEAVACDIANIFTYNSLLSWL 463



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 6/227 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++  L K   + +A+E++ +M  + ++ +  T + ++      N+  EA+  F+E   
Sbjct: 213 NFLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKS 272

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           RG++ D   +++++   CKN  ++ A  LL  M   G  P          +  +I    K
Sbjct: 273 RGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSE------GTFTSVIGACVK 326

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G +  A  L   +   G+  NVV     +   C  +++  A + F  M   G +PN V 
Sbjct: 327 QGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVT 386

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +  L+    +    +K  +L   M  +N+ P   I++ ++   +K E
Sbjct: 387 YAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVE 433



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 6/227 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YN +++   K   ++ A   F ++ + +I P +   N L+      +   EA  ++ +M+
Sbjct: 177 YNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMV 236

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
            +G+  D  T +++M    K+   +EA +        GV+ DA       AY  +I   C
Sbjct: 237 LKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDA------AAYSIVIQAFC 290

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K   ++ A  L + +   G +P+  T+   I A      M +A  L  +M   GV  N V
Sbjct: 291 KNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVV 350

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + TTL+  + ++++    +E    M++    P     +++++   KN
Sbjct: 351 VATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKN 397


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 16/238 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM--KDENINPNVVTYNSLIHGFCYANDGNE 69
           C P+ VTYNT++DGLC+ G V  A  +   M  K  N++PNVVTY +LI G+C   D  E
Sbjct: 267 CDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAE 326

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIV 128
           A  L  EM+ RGL+ + +T+N ++  LC+ +K+D+   +L+ M+  GG  PD  C +N  
Sbjct: 327 ALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT-CTLNT- 384

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
               LI   C +GKL+ A  + + ++   + P+  TY++ + +LC      +A + F ++
Sbjct: 385 ----LIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDEL 440

Query: 189 EVK-------GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             K       G  P    +  +        +T K   + R + KR      S  ++I+
Sbjct: 441 AEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLIL 498



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 8/239 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYA 64
           +E GV   P+ VT+N+++  + K G    AK+LF +M D   + P+  T+N LI GFC  
Sbjct: 192 KEIGV--SPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMN 249

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
           +  +E  + F EM       DVVT+N ++D LC+  K+  A  +    ++G V+      
Sbjct: 250 SMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNV----VKGMVKKSPNLS 305

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+V Y  LI G C    +  A  L   +   GL PN +TYN  I  LC  +++DK  ++
Sbjct: 306 PNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEI 365

Query: 185 FLDM-EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              M    G  P+     TL+ +     +  +   +   M +  V P ++  S++V  L
Sbjct: 366 LEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSL 424



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 9/208 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N++I      G   ++ ++F  MK+  ++P+VVT+NSL+         + A+ LF EM+
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 79  DR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           D  G+  D  TFN+++   C N  +DE       M +    PD      +V Y  L+DGL
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPD------VVTYNTLVDGL 281

Query: 138 CKIGKLKNARELSQSLTRAG--LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           C+ GK+K A  + + + +    L PNVVTY   I   C  + M +A  L  +M  +G+ P
Sbjct: 282 CRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKP 341

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSM 223
           N + + TL+       +  K+ E+L  M
Sbjct: 342 NKITYNTLIQGLCEAQKLDKIKEILEGM 369



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 11/225 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +GV   P+T T+N +I G C    VD+    F +M     +P+VVTYN+L+ G C A   
Sbjct: 230 YGVT--PDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 68  NEAEYLFIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             A  +   M+ +   L  +VVT+  ++   C  + M EA  LL  M+  G++P      
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKP------ 341

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           N + Y  LI GLC+  KL   +E+ + +    G +P+  T N  I A C   ++++A  +
Sbjct: 342 NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSV 401

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           F  M    V P+   ++ L+ S  ++ +  +  E    + ++ ++
Sbjct: 402 FEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEIL 446



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 14/222 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T T NT+I   C  G +++A  +F +M +  + P+  TY+ L+   C   D   AE  
Sbjct: 377 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEF 436

Query: 74  FIEMMDR-------GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
           F E+ ++       G +  V  +N + + LC N K  +A R+   +++ G +       +
Sbjct: 437 FDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-------D 489

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             +Y  LI G C+ G  +   +L   + R   +P+  TY + I  L        AH    
Sbjct: 490 PPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLE 549

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            M      P   IF +++ + + K    +   L++ M +R +
Sbjct: 550 KMLKSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRI 591



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 5/178 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGN 68
           V CKP    YN + + LC  G   KA+ +F Q MK    +P   +Y +LI G C      
Sbjct: 450 VGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPP--SYKTLILGHCREGTPE 507

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
               L + M+ R    D  T+ +++D L K      A + L+ M++    P      +I+
Sbjct: 508 AGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSIL 567

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           A   L++  C        + + +   R  +  +  T    +  LC   ++ +A  + L
Sbjct: 568 A--ALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLL 623



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 26/207 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +IDGL K+G    A +   +M   +  P    ++S++         +E+  L
Sbjct: 523 PDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHESASL 582

Query: 74  FIEMMDRGLQSDVVTFNVIMDE----LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
              M++R ++ ++      M+E    LC++RK+ EA ++L   ++          ++I  
Sbjct: 583 VKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQ------SVDIDM 636

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
              +I GLCK  K+  A  L   L   G+           H L   E      DL + +E
Sbjct: 637 CSTVISGLCKAHKVSEAFALYYELVEKGMQ----------HRLTCQE------DLRISLE 680

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKV 216
            +G        +  MP   ++ ++ + 
Sbjct: 681 AEGRLNEAKFVSKKMPEVPKQWQSDRT 707



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 2/176 (1%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           +Y T+I G C+EG  +   +L + M   +  P+  TY  +I G     D   A     +M
Sbjct: 492 SYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKM 551

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           +          F+ I+  L +     E+  L+ LM++  +R +   +++      L+  L
Sbjct: 552 LKSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQN--IDLSTHTMEELVSFL 609

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           C+  KL  A+++           ++   +  I  LC   ++ +A  L+ ++  KG+
Sbjct: 610 CQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGM 665


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A +L
Sbjct: 228 PNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 287

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A      MIQ   R D       V Y  L
Sbjct: 288 IDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDE------VXYTAL 341

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC  G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 342 ISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 401

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 402 VPSVVTYNVLM 412



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 114/209 (54%), Gaps = 6/209 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 128 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 187

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++  CK  K D+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 188 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVP------NXVXFTTLIDGHC 241

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AH L  +M  KG+ P+ +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKI 301

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            +TTL+    ++ +     E  + M + N
Sbjct: 302 TYTTLIDGCCKEGDLDSAFEHXKRMIQEN 330



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+G CKE   D A ELF +M  + + PN V + +LI G C     + A  
Sbjct: 192 QPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAME 251

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 252 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDK------ITYTT 305

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L +A E  + + +     + V Y   I  LC + +   A  +  +M   G
Sbjct: 306 LIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVG 365

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 366 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 403



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 157 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANE 216

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + V F  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 217 LFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 270

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 271 LIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQEN 330

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              + V +T L+     +  +    ++LR M    + P A   ++I++   K 
Sbjct: 331 XRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 383



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRP------SVVSYNT 165

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+  C + + D A++LF +M VKG
Sbjct: 166 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKG 225

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 226 LVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 263



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 367 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 48/108 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWG 155

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++
Sbjct: 156 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 203


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A +L
Sbjct: 245 PNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A      MIQ   R D       V Y  L
Sbjct: 305 IDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDX------VXYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC  G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 419 VPSVVTYNVLM 429



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 114/209 (54%), Gaps = 6/209 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++  CK  K D+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVP------NXVXFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AH L  +M  KG+ P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKI 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            +TTL+    ++ +     E  + M + N
Sbjct: 319 TYTTLIDGCCKEGDLDXAFEHXKRMIQEN 347



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+G CKE   D A ELF +M  + + PN V + +LI G C     + A  
Sbjct: 209 QPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDK------ITYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +     + V Y   I  LC + +   A  +  +M   G
Sbjct: 323 LIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + V F  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              + V +T L+     +  +    ++LR M    + P A   ++I++   K 
Sbjct: 348 XRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 400



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+  C + + D A++LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 243 LVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 280



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 384 KPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 48/108 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWG 172

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 9/238 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FGV  K      + ++  LCK   V +A+E F ++  E + PN  TY+ L+ G+    D
Sbjct: 178 DFGV--KAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVE-VMPNAKTYSILMRGWGDVGD 234

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            +EA  LF EM +RG   DVV +N +++ LCK   +DEA +L   M   G+ PDA     
Sbjct: 235 SSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDA----- 289

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             +Y   I   C++  + +A ++   + R  L+PNV TYN  +  LC  E++D+A+ L  
Sbjct: 290 -CSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLD 348

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +M  +GV+P+   +  +        E +K + L+  M+K N MP     ++++ +L++
Sbjct: 349 EMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLR 406



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 125/255 (49%), Gaps = 19/255 (7%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G  C  + V YN++++ LCK G VD+A +LF +M    + P+  +Y+  I  +C  N
Sbjct: 246 RERG--CAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVN 303

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D + A  +   M    L  +V T+N I+ +LCK+ K+DEA +LLD MI+ GV PD +   
Sbjct: 304 DIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYN 363

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            I A+ C     C++ K   A  L   + +   MP+  TYN+ +  L    + D+  D++
Sbjct: 364 AIQAFHC---DHCEVNK---ALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVW 417

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKN----ETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             ME +G  P    +  ++  F +K     E  K  E+   M    + PY    S  V+L
Sbjct: 418 GGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEM---MIDDGIPPY----SCTVEL 470

Query: 242 LVKNEISLNSIPQFN 256
           L    I L    Q +
Sbjct: 471 LRNRVIGLGFSEQID 485



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 7/190 (3%)

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           +   +C AN   +A   F +M D G+++ V   + ++  LCK + + +A    D  +   
Sbjct: 156 IFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFD-KVNVE 214

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           V P+A        Y  L+ G   +G    AR+L + +   G   +VV YN  + ALC   
Sbjct: 215 VMPNA------KTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGG 268

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
            +D+A+ LF +M   G+AP+   ++  + ++   N+     ++L  M + N++P     +
Sbjct: 269 NVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYN 328

Query: 237 IIVDLLVKNE 246
            IV  L K+E
Sbjct: 329 CIVKKLCKSE 338


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY   I G  +      A +   +M++  + PN V    LI+ +C      EA  
Sbjct: 519 KPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACS 578

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M+D+G+  D  T+ V+M+ L KN K+D+A  +   M   G+ PD F      +YG 
Sbjct: 579 AYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVF------SYGV 632

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  K+G ++ A  +   +   GL PNV+ YN+ +   C   +++KA +L  +M VKG
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + PN V + T++  + +  + ++   L   M  + ++P + + + +VD
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 129/272 (47%), Gaps = 34/272 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  +I+G  K G + KA  +F +M +E + PNV+ YN L+ GFC + +  +A+ L
Sbjct: 625 PDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL 684

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
             EM  +GL  + VT+  I+D  CK+  + EA RL D M   G+ PD+F           
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744

Query: 123 -----------------CEINIVAYGCLIDGLCKIGK--LKNA---RELSQSLTRAGLMP 160
                            C  +   +  LI+ + K GK  LK     R +  S  R G  P
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG-KP 803

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           N VTYNI I  LC +  ++ A +LF  M+   + P  + +T+L+  + +    +++  + 
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
                  + P   + S+I++  +K  ++  ++
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 125/258 (48%), Gaps = 36/258 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YN ++ G C+ G ++KAKEL  +M  + ++PN VTY ++I G+C + D  EA  L
Sbjct: 660 PNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRL 719

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA---------------------------- 105
           F EM  +GL  D   +  ++D  C+   ++ A                            
Sbjct: 720 FDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKF 779

Query: 106 ------TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
                 T +L+ ++ G    D F + N V Y  +ID LCK G L+ A+EL   +  A LM
Sbjct: 780 GKTELKTEVLNRLMDGSF--DRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM 837

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P V+TY   ++      +  +   +F +    G+ P+ ++++ ++ +F+++  T+K + L
Sbjct: 838 PTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVL 897

Query: 220 LRSMDKRNVMPYASILSI 237
           +  M  +N +     LSI
Sbjct: 898 VDQMFAKNAVDDGCKLSI 915



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN++I GL K   +D+A+   ++M +  + PN  TY + I G+  A++   A+  
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + G+  + V    +++E CK  K+ EA      M+  G+  DA        Y  L
Sbjct: 545 VKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDA------KTYTVL 598

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GL K  K+ +A E+ + +   G+ P+V +Y + I+       M KA  +F +M  +G+
Sbjct: 599 MNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL 658

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN +I+  L+  F R  E  K  ELL  M  + + P A     I+D
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIID 705



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    Y ++I+G C+E  V +  EL ++MK  NI  +  TY +++ G C + D + A  +
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNI 439

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G + +VV +  ++    +N +  +A R+L  M + G+ PD FC      Y  L
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC------YNSL 493

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL K  ++  AR     +   GL PN  TY   I       +   A     +M   GV
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN V+ T L+  + +K +  +     RSM  + ++  A   +++++ L KN+
Sbjct: 554 LPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY  +++GL K   VD A+E+F +M+ + I P+V +Y  LI+GF    +  +A  +F EM
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++ GL  +V+ +N+++   C++ ++++A  LLD M   G+ P+A      V Y  +IDG 
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNA------VTYCTIIDGY 707

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G L  A  L   +   GL+P+   Y   +   C    +++A  +F     KG A + 
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASST 766

Query: 198 VIFTTLMPSFIRKNETSKVIELL-RSMD---KRNVMPYASILSIIVDLLVK 244
             F  L+    +  +T    E+L R MD    R   P     +I++D L K
Sbjct: 767 APFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 9/224 (4%)

Query: 10  VVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           ++CK   P   TY+ +IDGLCK   ++ AK L ++M    ++ +  TY+ LI G     +
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A+ L  EM+  G+      ++  +  + K   M++A  L D MI  G+ P A     
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQA----- 382

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             AY  LI+G C+   ++   EL   + +  ++ +  TY   +  +C+   +D A+++  
Sbjct: 383 -QAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVK 441

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +M   G  PN VI+TTL+ +F++ +     + +L+ M ++ + P
Sbjct: 442 EMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 8/222 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  KP    Y+  I  + KEG ++KAK LF  M    + P    Y SLI G+C   +  
Sbjct: 342 GINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVR 399

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +   L +EM  R +     T+  ++  +C +  +D A  ++  MI  G RP      N+V
Sbjct: 400 QGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP------NVV 453

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI    +  +  +A  + + +   G+ P++  YN  I  L   ++MD+A    ++M
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              G+ PN   +   +  +I  +E +   + ++ M +  V+P
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLP 555



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 5/163 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN +ID LCKEG ++ AKELF QM++ N+ P V+TY SL++G  Y   G  AE 
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG--YDKMGRRAEM 859

Query: 73  --LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F E +  G++ D + ++VI++   K     +A  L+D M       D  C+++I   
Sbjct: 860 FPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDG-CKLSISTC 918

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             L+ G  K+G+++ A ++ +++ R   +P+  T    I+  C
Sbjct: 919 RALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 29/246 (11%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND-- 66
           G+   P       ++D L +   +D   +++  M + N+  +V TY+ LI   C A +  
Sbjct: 179 GLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQ 238

Query: 67  -------GNEAEY------------LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
                    E E+            L   M+ +GL     T++V++D LCK +++++A  
Sbjct: 239 LGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKS 298

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           LL  M   GV  D         Y  LIDGL K      A+ L   +   G+      Y+ 
Sbjct: 299 LLVEMDSLGVSLDNH------TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDC 352

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I  +  +  M+KA  LF  M   G+ P    + +L+  + R+    +  ELL  M KRN
Sbjct: 353 CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRN 412

Query: 228 VM--PY 231
           ++  PY
Sbjct: 413 IVISPY 418


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 130/251 (51%), Gaps = 31/251 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN+ TYN I+DGLCKEG     +++   +K   + P+VVTY SL+H +C   +   A  
Sbjct: 353 QPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANR 412

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFCEINIVAYG 131
           +  EM  +G   +  T+NV++  L K  ++ EA RLL+ M + G   D A C I      
Sbjct: 413 ILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNI------ 466

Query: 132 CLIDGLCKIGKLKNAREL--------SQSLTRAGL---------------MPNVVTYNIT 168
            +IDGLC+  KL  A ++        S +L R G                +P+ +TY+  
Sbjct: 467 -IIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTL 525

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           + ALC + + D+A    L+M  K ++P+ V++ T +  + +  +TS  +++LR M+K+  
Sbjct: 526 VSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGC 585

Query: 229 MPYASILSIIV 239
            P     ++++
Sbjct: 586 KPSTRTYNLLI 596



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 33/264 (12%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V  NT++ G C+EG VD+A+ L  +M+DE + PNVVT+N+ I   C A    +A  +F
Sbjct: 211 NLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVLDAYRIF 270

Query: 75  IEM---MDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV--RPDAF------ 122
            +M    +RGL + D VTF+V++   C+   +DEA  L+D+M  GG   R +++      
Sbjct: 271 NDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSG 330

Query: 123 ---------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
                                 + N   Y  ++DGLCK GK  + R++   +    + P+
Sbjct: 331 LVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPD 390

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY   +HA C++     A+ +  +M  KG APN   +  L+ S  +    ++   LL 
Sbjct: 391 VVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLE 450

Query: 222 SMDKRNVMPYASILSIIVDLLVKN 245
            M ++      +  +II+D L +N
Sbjct: 451 RMSEKGYSLDTASCNIIIDGLCRN 474



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 115/287 (40%), Gaps = 52/287 (18%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           V  P+ VTY +++   C EG    A  +  +M  +   PN  TYN L+     A    EA
Sbjct: 386 VMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEA 445

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG-------------- 116
           E L   M ++G   D  + N+I+D LC+N K+D A  ++D M   G              
Sbjct: 446 ERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSL 505

Query: 117 ---------VRPD---------AFCE--------------------INIVAYGCLIDGLC 138
                      PD         A C+                     + V Y   I G C
Sbjct: 506 LTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYC 565

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GK   A ++ + + + G  P+  TYN+ I         D+   L  +M+ KG+ PN +
Sbjct: 566 KHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVM 625

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            + +L+ SF  +   +K + LL  M +  ++P  +   +++    K 
Sbjct: 626 TYNSLIKSFCERGMVNKAMPLLDEMLQNEIVPNITSFELLIKAFCKT 672



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 105/210 (50%), Gaps = 10/210 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY+T++  LCKEG  D+AK+  L+M  ++I+P+ V Y++ IHG+C     + A 
Sbjct: 515 CLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAV 574

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M  +G +    T+N+++    +    DE  +L+  M   G+ P      N++ Y 
Sbjct: 575 KVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICP------NVMTYN 628

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI   C+ G +  A  L   + +  ++PN+ ++ + I A C       A  +F D  + 
Sbjct: 629 SLIKSFCERGMVNKAMPLLDEMLQNEIVPNITSFELLIKAFCKTSDFSAAQRVF-DASLS 687

Query: 192 GVAPNCVIFT---TLMPSFIRKNETSKVIE 218
                 V+++   T + ++ R  E   ++E
Sbjct: 688 TCGQKEVLYSLMCTQLSTYGRWLEAMNILE 717



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VT++ ++ G C+ G VD+A+ L   M+       V +YN  + G        EA+ 
Sbjct: 283 RPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQE 342

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   G+Q +  T+N+I+D LCK  K  +  ++ D +  G + PD      +V Y  
Sbjct: 343 LLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPD------VVTYTS 396

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+   C  G    A  +   + + G  PN  TYN+ + +L    ++ +A  L   M  KG
Sbjct: 397 LLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKG 456

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            + +      ++    R N+    ++++  M
Sbjct: 457 YSLDTASCNIIIDGLCRNNKLDMAMDIVDGM 487



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 7/212 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+T TYN +I G  ++   D+  +L  +MK + I PNV+TYNSLI  FC     N+A 
Sbjct: 585 CKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAM 644

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+   +  ++ +F +++   CK      A R+ D  +       + C    V Y 
Sbjct: 645 PLLDEMLQNEIVPNITSFELLIKAFCKTSDFSAAQRVFDASL-------STCGQKEVLYS 697

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +   L   G+   A  + +++    +  +   Y   I  LC  +++D  H L   + VK
Sbjct: 698 LMCTQLSTYGRWLEAMNILETVLELRISIHRFPYKQIIEGLCKVDEVDHGHRLLKLLMVK 757

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G + +   F  ++ +   + +   V  L + M
Sbjct: 758 GYSFDPAAFMPVIDALSERGKKQHVDMLSQKM 789



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 101/257 (39%), Gaps = 37/257 (14%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YN ++    +E   D  + L+  +      P+V T N L+   C A     A  +F  M 
Sbjct: 118 YNRLLLAALQEARFDLVESLYKDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAMP 177

Query: 79  DR---------------GLQSD------------VVTFNVIMDELCKNRKMDEATRLLDL 111
           +R               G   D            +V  N ++   C+  ++DEA RL++ 
Sbjct: 178 ERNEFSFGILARGYCRAGRSMDALGVLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVER 237

Query: 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA----RELSQSLTRAGLMPNVVTYNI 167
           M   G+ P      N+V +   I  LCK G++ +A     ++ +   R    P+ VT+++
Sbjct: 238 MRDEGLAP------NVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDV 291

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            +   C    +D+A  L   M   G       +   +   +R     +  ELLR M    
Sbjct: 292 MLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEG 351

Query: 228 VMPYASILSIIVDLLVK 244
           V P +   +IIVD L K
Sbjct: 352 VQPNSYTYNIIVDGLCK 368


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            YNT++ G C+ G +D A+ L   M    + P+  TY  LI   C      +A  L  +M
Sbjct: 112 AYNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDM 168

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           + RG Q +VVT+ V+++ +CKN   ++A  +LD M   G  P      NIV Y  +I+G+
Sbjct: 169 LRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTP------NIVTYNVIINGM 222

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C+ G++ +AR+L   L   G  P+ V+Y   +  LC  ++ D   +LF +M  K   PN 
Sbjct: 223 CREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNE 282

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V F  L+  F R     + I++L+ M +       ++ +I+++ + K 
Sbjct: 283 VTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQ 330



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 9/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C    VTYN +++G C +G +D A ELF  M      PN +TY +L+ G C A   + A 
Sbjct: 418 CTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERLDAAA 474

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ R    +VVTFNV+++  C+   +DEA  L++ M++ G  P      N++ Y 
Sbjct: 475 ELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTP------NLITYN 528

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L DG+ K    ++A EL   L   G+ P+V+T++  I  L  ++++++A  +F   +  
Sbjct: 529 TLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDI 588

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P  +++  ++    +++E    I+ L  M     MP  S   I+++ L +
Sbjct: 589 GMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAR 641



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 7/233 (3%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR F   C+P+TV+Y T++ GLC     D  +ELF +M ++N  PN VT++ LI  FC  
Sbjct: 236 NRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRG 295

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
                A  +  +M +    ++    N++++ +CK  ++D+A + L+ M   G  PD    
Sbjct: 296 GMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDT--- 352

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
              ++Y  ++ GLC+  +  +A+EL + + R    PN VT+N  I  LC    +++A  L
Sbjct: 353 ---ISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIML 409

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD-KRNVMPYASILS 236
              M+  G     V +  L+  F  +      +EL RSM  K N + Y ++L+
Sbjct: 410 IEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLT 462



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 114/245 (46%), Gaps = 9/245 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T++Y T++ GLC+    + AKEL  +M   N  PN VT+N+ I   C      +A 
Sbjct: 348 CNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAI 407

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M + G    VVT+N +++  C    +D A  L   M          C+ N + Y 
Sbjct: 408 MLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---------CKPNTITYT 458

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLC   +L  A EL   +      PNVVT+N+ ++  C    +D+A +L   M   
Sbjct: 459 TLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEH 518

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  PN + + TL     +   +   +ELL  +  + V P     S I+ +L K +    +
Sbjct: 519 GCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEA 578

Query: 252 IPQFN 256
           I  F+
Sbjct: 579 IQMFH 583



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 121/237 (51%), Gaps = 10/237 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+NT I  LC++G +++A  L  QM++      VVTYN+L++GFC     + A 
Sbjct: 383 CPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSAL 442

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M     + + +T+  ++  LC   ++D A  L+  M+     P      N+V + 
Sbjct: 443 ELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPP------NVVTFN 493

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L++  C+ G L  A EL + +   G  PN++TYN     +  D   + A +L   +  K
Sbjct: 494 VLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSK 553

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS-IIVDLLVKNEI 247
           GV+P+ + F++++    +++   + I++        + P A + + I++ L  ++EI
Sbjct: 554 GVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEI 610



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNT+TY T++ GLC    +D A EL  +M   +  PNVVT+N L++ FC     +EA 
Sbjct: 450 CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAI 509

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +MM+ G   +++T+N + D + K+   ++A  LL  ++  GV PD      ++ + 
Sbjct: 510 ELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPD------VITFS 563

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  L K  +++ A ++       G+ P  + YN  +  LC   ++D A D    M   
Sbjct: 564 SIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSN 623

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229
           G  PN   +  L+    R+    +  +LL  +  R V+
Sbjct: 624 GCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGVV 661



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN VTY  +++ +CK    ++A  +  +M+ +   PN+VTYN +I+G C     ++A 
Sbjct: 173 CQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 232

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   +   G Q D V++  ++  LC +++ D+   L   M++    P      N V + 
Sbjct: 233 DLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMP------NEVTFD 286

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI   C+ G ++ A ++ Q +T      N    NI I+++C   ++D A     +M   
Sbjct: 287 MLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSY 346

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G  P+ + +TT++    R    +   ELL+ M + N  P
Sbjct: 347 GCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPP 385



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 9/164 (5%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G   DV     ++  LC+  +  +A R+L    +G   P     +++ AY  L+ G C+ 
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLR-AAEGSGSP-----VDVFAYNTLVAGYCRY 123

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G L  AR L  S+  A   P+  TY   I  LC+  ++  A  L  DM  +G  PN V +
Sbjct: 124 GHLDAARRLIGSMPVA---PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTY 180

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           T L+ +  + +   + + +L  M  +   P     ++I++ + +
Sbjct: 181 TVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCR 224



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 14/144 (9%)

Query: 105 ATRLLDLMI-QGGVRPDAFCEINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           A RL++L   + G  PD         Y C  LI  LC+ G+  +A  + ++   +G   +
Sbjct: 58  AARLVELSASRDGEAPDV--------YLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVD 109

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           V  YN  +   C    +D A  L   M    VAP+   +T L+     +   +  + LL 
Sbjct: 110 VFAYNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLD 166

Query: 222 SMDKRNVMPYASILSIIVDLLVKN 245
            M +R   P     +++++ + KN
Sbjct: 167 DMLRRGCQPNVVTYTVLLEAMCKN 190



 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 32/72 (44%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  + YN I+ GLCK   +D A +    M      PN  TY  LI G        EA+ 
Sbjct: 591 RPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQD 650

Query: 73  LFIEMMDRGLQS 84
           L   +  RG+ S
Sbjct: 651 LLSMLCSRGVVS 662


>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
          Length = 571

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 13/247 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R F  + KP+  +YNT+IDGLC+ G + +A++LF +M      P VVTY +LIH      
Sbjct: 196 RVFRNIPKPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREA 255

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++A  LF EM  RG+  +VVT++ ++D LCK  +   A  LLD M++    P      
Sbjct: 256 CFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLP------ 309

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N + Y  +IDGLCK G L  A E+   +   G  P+   +   I  LC+  +  +A +  
Sbjct: 310 NTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYL 369

Query: 186 LDMEVKGVAPNCVIFT-------TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            +M   G+ PN + ++        ++ +   K E  +  ++ +SM  R +    +   ++
Sbjct: 370 DEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLL 429

Query: 239 VDLLVKN 245
           V+ L K 
Sbjct: 430 VECLSKK 436



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 7/207 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+++IDGLCK G    A EL  +M  E   PN +TY+S+I G C      +A  +
Sbjct: 274 PNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEI 333

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG-- 131
              M  +G + D   F  ++  LC   +  EA+  LD M   G+RP+    +    +G  
Sbjct: 334 LDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPN---RLTWSLHGRI 390

Query: 132 --CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
              ++  LC  G++  A ++ QS+   G+     T+++ +  L     ++KA  +  DM 
Sbjct: 391 NDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDML 450

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKV 216
            +   P    + T++ ++  K +   V
Sbjct: 451 SERCIPERETWDTIVRAYWSKKKLRAV 477



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 13/205 (6%)

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           SL+  +  A+    A +LF       GL     ++  ++  L  +  +  A  LL  M  
Sbjct: 107 SLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRA 166

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLK--NARELSQSLTRAGLMPNVVTYNITIHAL 172
            G  P          Y  L+   C    +   +A  + +++ +    P+  +YN  I  L
Sbjct: 167 AGFAP------TTATYNVLVKAHCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGL 216

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           C   ++ +A DLF +M   G AP  V +TTL+    R+      ++L   M +R +MP  
Sbjct: 217 CRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNV 276

Query: 233 SILSIIVDLLVKNEISLNSIPQFNR 257
              S ++D L K   + +++   +R
Sbjct: 277 VTYSSLIDGLCKGGRAASAVELLDR 301


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P      T+I GLCK G   KA EL+L+  ++    +  T N+L+HG C A    E   +
Sbjct: 460 PGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRI 519

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E++ RG   D V++N ++   C N+K+DEA   +D M++ G++PD +       Y  L
Sbjct: 520 QKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNY------TYSIL 573

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL  + K++ A +      R G++P+V TY++ I   C  E+ ++   LF +M    +
Sbjct: 574 IRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNL 633

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            PN V++  L+ ++ R    S  +EL   M  + + P ++  + ++
Sbjct: 634 QPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 679



 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 11/242 (4%)

Query: 8   FGVVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           F VVCK   P+   + T I+  CK G V++A ELF +M++  + PNVVTYN++I G   +
Sbjct: 241 FHVVCKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMS 300

Query: 65  NDGNEAEYLFIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123
              +EA ++F E M++RG++  ++T+++++  L K +++ +A  +L  M + G  P    
Sbjct: 301 GRYDEA-FMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPP---- 355

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             N++ Y  LID L + G L  A E+   +   GL     TYN  I   C   Q D A  
Sbjct: 356 --NVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAER 413

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           L  +M   G   N   FT+++      +     +  +  M  RN+ P   +L+ ++  L 
Sbjct: 414 LLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLC 473

Query: 244 KN 245
           K+
Sbjct: 474 KH 475



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 6/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V+YNT+I G C    +D+A     +M  + + P+  TY+ LI G    N   EA   +
Sbjct: 531 DRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFW 590

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +    G+  DV T++V++D  CK  + +E  +L D M+   ++P      N V Y  LI
Sbjct: 591 GDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQP------NTVVYNHLI 644

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C+ G+L  A EL + +   G+ PN  TY   I  +    ++++A  L  +M ++G+ 
Sbjct: 645 GAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLE 704

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           PN   +T L+  + +  +  KV  LLR M  +NV P
Sbjct: 705 PNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP 740



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY+ +I GL     V++A + +   K   + P+V TY+ +I G C A    E + 
Sbjct: 564 KPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQK 623

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EMM   LQ + V +N ++   C++ ++  A  L + M   G+ P      N   Y  
Sbjct: 624 LFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISP------NSATYTS 677

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G+  I +++ A+ L + +   GL PNV  Y   I       QM K   L  +M  K 
Sbjct: 678 LIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 737

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           V PN + +T ++  + R    ++   LL  M ++ ++P
Sbjct: 738 VHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVP 775



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 111/222 (50%), Gaps = 12/222 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +IDG CK    ++ ++LF +M   N+ PN V YN LI  +C +   + A  L
Sbjct: 600 PDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALEL 659

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M  +G+  +  T+  ++  +    +++EA  LL+ M   G+ P      N+  Y  L
Sbjct: 660 REDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEP------NVFHYTAL 713

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K+G++     L + +    + PN +TY + I     D  + +A  L  +M  KG+
Sbjct: 714 IDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGI 773

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            P+ + +   +  ++++     V++  +  D+ N   YA+I+
Sbjct: 774 VPDSITYKEFIYGYLKQG---GVLQAFKGSDEEN---YAAII 809



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 29/262 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YN +ID L + G ++KA E+   M  + ++    TYN+LI G+C +   + AE L
Sbjct: 355 PNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERL 414

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132
             EM+  G   +  +F  ++  LC +   D A R +  M+   + P       +++  C 
Sbjct: 415 LKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCK 474

Query: 133 ----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                                       L+ GLC+ GKL+    + + +   G + + V+
Sbjct: 475 HGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVS 534

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I   C ++++D+A     +M  KG+ P+   ++ L+   +  N+  + I+      
Sbjct: 535 YNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCK 594

Query: 225 KRNVMPYASILSIIVDLLVKNE 246
           +  ++P     S+++D   K E
Sbjct: 595 RNGMIPDVYTYSVMIDGCCKAE 616



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--EA 70
           +PN   Y  +IDG  K G + K + L  +M  +N++PN +TY  +I G  YA DGN  EA
Sbjct: 704 EPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGG--YARDGNVTEA 761

Query: 71  EYLFIEMMDRGLQSDVVTF 89
             L  EM ++G+  D +T+
Sbjct: 762 SRLLHEMREKGIVPDSITY 780


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 130/251 (51%), Gaps = 31/251 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN+ TYN I+ GLCKEG    A+ +   ++   ++P+VVTY SL+H +C   +   A  
Sbjct: 348 QPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANR 407

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFCEINIVAYG 131
           +  EM  +G   +  T+NV++  L +  +  EA RLL+ M + G   D A C I      
Sbjct: 408 ILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNI------ 461

Query: 132 CLIDGLCKIGKLKNA--------RELSQSLTRAG---------------LMPNVVTYNIT 168
            +IDGLC+  +L  A         E S +L R G                +P+ +TY+I 
Sbjct: 462 -IIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSIL 520

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           I ALC + + D+A    L+M VK ++P+ VI+ T +  + +  +TS  I++LR M+K+  
Sbjct: 521 ISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGC 580

Query: 229 MPYASILSIIV 239
            P     ++++
Sbjct: 581 NPSTRTYNLLI 591



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 12/237 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN----PNVVTYNSLIHGFCYANDGNE 69
           PN VT+N  I  LCK G V  A  +F  M+++  +    P+ VT++ ++ GFC A   +E
Sbjct: 240 PNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDE 299

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L   M   G    V ++N  +  L +N ++ EA  LL  M   G++P+++       
Sbjct: 300 ARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSY------T 353

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLM-PNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           Y  ++ GLCK GK  +AR + ++  R+G+M P+VVTY   +HA C+   +  A+ +  +M
Sbjct: 354 YNIIVSGLCKEGKAFDARRV-ENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEM 412

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             KG APN   +  L+ S  R   T++   LL  M+++      +  +II+D L +N
Sbjct: 413 AQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRN 469



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 56/296 (18%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           V  P+ VTY +++   C +G +  A  +  +M  +   PN  TYN L+     A    EA
Sbjct: 381 VMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEA 440

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR------------ 118
           E L   M ++G   D    N+I+D LC+N ++D A  ++D M + G              
Sbjct: 441 ERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSV 500

Query: 119 -----------PD---------AFCE--------------------INIVAYGCLIDGLC 138
                      PD         A C+                     + V Y   I G C
Sbjct: 501 VSDSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYC 560

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GK   A ++ + + + G  P+  TYN+ I       + ++   L  +M+ KG++PN +
Sbjct: 561 KHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVM 620

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
            + +L+ SF ++   +K + LL  M +  ++P  +I S   DLL+K    +   P 
Sbjct: 621 TYNSLIKSFCQQGMVNKAMPLLDEMLQNELVP--NITSF--DLLIKAYCKITDFPS 672



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 113/229 (49%), Gaps = 11/229 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY+ +I  LCKEG  D+AK+  L+M  ++I+P+ V Y++ IHG+C     + A 
Sbjct: 510 CLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAI 569

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M  +G      T+N+++    +  K +E  +L+  M + G+ P      N++ Y 
Sbjct: 570 KVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISP------NVMTYN 623

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI   C+ G +  A  L   + +  L+PN+ ++++ I A C       A  +F D  ++
Sbjct: 624 SLIKSFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLIKAYCKITDFPSAQMVF-DAALR 682

Query: 192 GVAPNCVIF---TTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASILS 236
                 V++    T + ++ +  E   ++E+   M       PY  I+S
Sbjct: 683 TCGQKEVLYCLMCTELTTYGKWIEAKNILEMALEMRVSIQSFPYKQIIS 731



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 53/270 (19%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T  YN +I    +E  +D  + L+  +      P+V T N L+   C A     A+ +
Sbjct: 108 PTTPVYNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGRMELAQRV 167

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M  R    +  +F ++    C+  +  +A ++LD M            +N+V    +
Sbjct: 168 FDAMPAR----NEFSFGILARGYCRAGRSIDALKVLDGMPS----------MNLVVCNTV 213

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME---V 190
           + G CK G ++ A  L + +   GL PNVVT+N  I ALC   ++  A+ +F DM+    
Sbjct: 214 VAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQ 273

Query: 191 KGVA-PNCVIFTTLMPSF-----------------------------------IRKNETS 214
            G+  P+ V F  ++  F                                   +R     
Sbjct: 274 HGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVG 333

Query: 215 KVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  ELLR M    + P +   +IIV  L K
Sbjct: 334 EAQELLREMAHEGIQPNSYTYNIIVSGLCK 363



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 40/206 (19%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++V Y+T I G CK G    A ++   M+ +  NP+  TYN LI GF   +   E   L
Sbjct: 547 PDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKL 606

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM ++G+  +V+T+N ++   C+   +++A  LLD M+Q  + P      NI ++  L
Sbjct: 607 MSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVP------NITSFDLL 660

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVV------------------------------ 163
           I   CKI    +A+ +  +  R      V+                              
Sbjct: 661 IKAYCKITDFPSAQMVFDAALRTCGQKEVLYCLMCTELTTYGKWIEAKNILEMALEMRVS 720

Query: 164 ----TYNITIHALCNDEQMDKAHDLF 185
                Y   I  LC   ++D AH L 
Sbjct: 721 IQSFPYKQIISGLCEVGEVDHAHSLL 746


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 6/237 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           +G  C PN V YNT+IDG CK+G V+ A +LF ++K +   P + T+ SL++GFC     
Sbjct: 235 WGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMF 294

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
              + L +EM DRGL  +V  +N I+D   K     +A   L  M +    PD      +
Sbjct: 295 EAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPD------L 348

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           V Y  LI+  C  G+++ A +L +   R GL PN +TY   +H  C   +  KA D  ++
Sbjct: 349 VTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIE 408

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           M   G+  + + +  L+   +   E    + +   M  R ++P A+I +++++ L K
Sbjct: 409 MSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFK 465



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 115/254 (45%), Gaps = 41/254 (16%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTYNT+I+  C  G V++A++L  Q     + PN +TY  L+HG+C   +  +A 
Sbjct: 344 CEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKAT 403

Query: 72  YLFIE-----------------------------------MMDRGLQSDVVTFNVIMDEL 96
              IE                                   MM+RG+  D   +NV+M+ L
Sbjct: 404 DYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGL 463

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            K  K+  A  +L  M+   + PDAF       Y  L+DG  + G L  A++L Q +   
Sbjct: 464 FKKGKLSMAKVMLTEMLDQNIAPDAF------VYATLVDGFIRHGNLDEAKKLFQLIIEK 517

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P VV YN+ I        MD A      M      P+   F+T++  +++++  + V
Sbjct: 518 GLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAV 577

Query: 217 IELLRSMDKRNVMP 230
           +++   M K+N  P
Sbjct: 578 LKIFGLMVKQNCKP 591



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 119/266 (44%), Gaps = 41/266 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY  ++ G CK+G   KA +  ++M    +  ++++Y +LIHG   A + + A  +
Sbjct: 381 PNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTI 440

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              MM+RG+  D   +NV+M+ L K  K+  A  +L  M+   + PDAF       Y  L
Sbjct: 441 RDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAF------VYATL 494

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD----------KAH- 182
           +DG  + G L  A++L Q +   GL P VV YN+ I        MD          +AH 
Sbjct: 495 VDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHH 554

Query: 183 --DLF-----LDMEVK-----------------GVAPNCVIFTTLMPSFIRKNETSKVIE 218
             D+F     +D  VK                    PN V +T+L+  + RK ET    +
Sbjct: 555 VPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEK 614

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           L   M    + P     SI++    K
Sbjct: 615 LFSMMRSHGLKPSVVTYSILIGSFCK 640



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 29/230 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN +++GL K+G +  AK +  +M D+NI P+   Y +L+ GF    + +EA+ L
Sbjct: 451 PDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKL 510

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
           F  ++++GL   VV +NV++    K+  MD A   +D M +    PD F           
Sbjct: 511 FQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVK 570

Query: 123 ------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             C+ N+V Y  LI+G C+ G+ K A +L   +   GL P+VVT
Sbjct: 571 QHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVT 630

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214
           Y+I I + C + ++ KA   F  M +    PN   F  L+  F     T+
Sbjct: 631 YSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNTKATA 680



 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 43/260 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T++TIIDG  K+  ++   ++F  M  +N  PNVVTY SLI+G+C   +   AE L
Sbjct: 556 PDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKL 615

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-------------- 119
           F  M   GL+  VVT+++++   CK  K+ +A    +LM+     P              
Sbjct: 616 FSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTN 675

Query: 120 ----------------------DAFCEI-------NIVAYGCLIDGLCKIGKLKNARELS 150
                                 D F  +          AY C++  LC+   +K A +L 
Sbjct: 676 TKATAVSREPNNLHENSRSMFEDFFSRMIGDGWTQKAAAYNCILICLCQQRMVKTALQLR 735

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
             +   GL  + V++   IH +C +    +  ++      +G     + ++  +  FI +
Sbjct: 736 NKMLAFGLCSDAVSFVALIHGICLEGNSKEWRNMISCDLNEGELQIALKYSLELDKFIPE 795

Query: 211 NETSKVIELLRSMDKRNVMP 230
              S+   +L++M K  V P
Sbjct: 796 GGISEASGILQAMIKGYVSP 815



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 2/155 (1%)

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149
           N +++ L K+R+++ A +L D MI      D  C  N      ++ GLC  G++++  +L
Sbjct: 173 NSLLNLLVKHRRIETAHQLYDEMIDRD-NGDDICVDNYTT-SIMVKGLCLKGRIEDGIKL 230

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            +S    G +PN+V YN  I   C   +++ A+ LF  +++KG  P    F +L+  F +
Sbjct: 231 IESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCK 290

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
                 +  LL  M  R +     + + I+D   K
Sbjct: 291 MGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYK 325



 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 54/116 (46%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           +R  G         YN I+  LC++  V  A +L  +M    +  + V++ +LIHG C  
Sbjct: 701 SRMIGDGWTQKAAAYNCILICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGICLE 760

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            +  E   +    ++ G     + +++ +D+      + EA+ +L  MI+G V P+
Sbjct: 761 GNSKEWRNMISCDLNEGELQIALKYSLELDKFIPEGGISEASGILQAMIKGYVSPN 816


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  V++NT+I+G CK G +++   L + M++  + P+V TY++LI G C      +A +
Sbjct: 264 QPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANH 323

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM DRGL  + VTF  +++  CKN ++D A  +   M   G++ D      +V Y  
Sbjct: 324 LFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKAD------LVLYNT 377

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLCK G  + AR+    +T+ GL+P+  TY   +   C +  ++ A ++  +M  +G
Sbjct: 378 LIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEG 437

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V FT ++    R  +       LR M +  + P     ++++D   K
Sbjct: 438 IQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCK 489



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +IDGLCKE  ++ A  LF +M D  + PN VT+ +LI+G C     + A  +
Sbjct: 300 PDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEI 359

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M  +GL++D+V +N ++D LCK     EA + +  M + G+ PD F       Y  L
Sbjct: 360 YQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKF------TYTTL 413

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG CK G L+ A E+ + + + G+  + V +   I  LC D ++  A     +M   G+
Sbjct: 414 LDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGL 473

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   +T +M  F +K +     +LL+ M     +P     +++++ L K 
Sbjct: 474 KPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQ 525



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 10/234 (4%)

Query: 1   MANGNREFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS 56
           + + N  F  +C     PN VT+ T+I+G CK G VD A E++ QM  + +  ++V YN+
Sbjct: 318 LEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNT 377

Query: 57  LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116
           LI G C      EA     EM  RGL  D  T+  ++D  CK   ++ A  +   M++ G
Sbjct: 378 LIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEG 437

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
           ++ D       VA+  +I GLC+ GK+ +A    + + RAGL P+  TY + +   C   
Sbjct: 438 IQLDN------VAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKG 491

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +     L  +M+  G  P  + +  LM    ++ +      LL +M    V+P
Sbjct: 492 DVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVP 545



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V YNT+IDGLCK G+  +A++   +M    + P+  TY +L+ G C   D   A  
Sbjct: 369 KADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALE 428

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  G+Q D V F  I+  LC++ K+ +A R L  M++ G++PD         Y  
Sbjct: 429 MRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDD------GTYTM 482

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++DG CK G +K   +L + +   G +P V+TYN+ ++ LC   Q+  A  L   M   G
Sbjct: 483 VMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLG 542

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           V P+ + +  L+    +  +      +   M    V  YAS  S++ +L
Sbjct: 543 VVPDDITYNILLQGHCKHGKLGDFQNVKTEMGL--VSDYASYRSLLHEL 589



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           ++  ++ ++    + G+V  A + F   K  N+         L+      +    A   +
Sbjct: 161 SSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFY 220

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           +E++D G   +V TFNV+M+ LCK  K+ +A  + D + + G++P A      V++  LI
Sbjct: 221 LEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTA------VSFNTLI 274

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +G CK G L+    L   +    + P+V TY+  I  LC + Q++ A+ LF +M  +G+ 
Sbjct: 275 NGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLV 334

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           PN V FTTL+    +       +E+ + M  + +     + + ++D L K 
Sbjct: 335 PNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKG 385


>gi|222619024|gb|EEE55156.1| hypothetical protein OsJ_02962 [Oryza sativa Japonica Group]
          Length = 428

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 13/247 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R F  + KP+  +YNT+IDGLC+ G + +A++LF +M      P VVTY +LIH      
Sbjct: 33  RVFRNIPKPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREA 92

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++A  LF EM  RG+  +VVT++ ++D LCK  +   A  LLD M++    P      
Sbjct: 93  CFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLP------ 146

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N + Y  +IDGLCK G L  A E+   +   G  P+   +   I  LC+  +  +A +  
Sbjct: 147 NTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYL 206

Query: 186 LDMEVKGVAPNCVIFT-------TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            +M   G+ PN + ++        ++ +   K E  +  ++ +SM  R +    +   ++
Sbjct: 207 DEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLL 266

Query: 239 VDLLVKN 245
           V+ L K 
Sbjct: 267 VECLSKK 273



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 7/207 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+++IDGLCK G    A EL  +M  E   PN +TY+S+I G C      +A  +
Sbjct: 111 PNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEI 170

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG-- 131
              M  +G + D   F  ++  LC   +  EA+  LD M   G+RP+    +    +G  
Sbjct: 171 LDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPN---RLTWSLHGRI 227

Query: 132 --CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
              ++  LC  G++  A ++ QS+   G+     T+++ +  L     ++KA  +  DM 
Sbjct: 228 NDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDML 287

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKV 216
            +   P    + T++ ++  K +   V
Sbjct: 288 SERCIPERETWDTIVRAYWSKKKLRAV 314



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%)

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+  +YN  I  LC   ++ +A DLF +M   G AP  V +TTL+    R+      ++L
Sbjct: 41  PDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKL 100

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
              M +R +MP     S ++D L K   + +++   +R
Sbjct: 101 FDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDR 138


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 136/243 (55%), Gaps = 17/243 (6%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           EF V   P+ VTYNTI+  + K+G +   KEL L MK   + PN VTYN+L++G+C    
Sbjct: 233 EFKV--NPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGS 290

Query: 67  GNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             EA +  +E+M +  +  D+ T+N++++ LC    M E   L+D M    ++PD     
Sbjct: 291 LKEA-FQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPD----- 344

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD----KA 181
            +V Y  LIDG  ++G    AR+L + +   G+  N VT+NI++  LC +E+ +    K 
Sbjct: 345 -VVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKV 403

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
            +L   +++ G +P+ V + TL+ ++++  + S  +E++R M ++ +      L+ I+D 
Sbjct: 404 KEL---VDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDA 460

Query: 242 LVK 244
           L K
Sbjct: 461 LCK 463



 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN +I+GLC  G + +  EL   MK   + P+VVTYN+LI G        EA  L
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKL 367

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGC 132
             +M + G++++ VT N+ +  LCK  K +  TR + +L+   G  PD      IV Y  
Sbjct: 368 MEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPD------IVTYHT 421

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI    K+G L  A E+ + + + G+  N +T N  + ALC + ++D+AH+L      +G
Sbjct: 422 LIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRG 481

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              + V + TL+  F R+ +  K +E+   M K  + P  S  + ++
Sbjct: 482 FIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLI 528



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTY T+I G  +E  V+KA E++ +MK   I P V T+NSLI G C+      A   F E
Sbjct: 487 VTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDE 546

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLID 135
           + + GL  D  TFN I+   CK  ++++A    +  I+   +PD + C I       L++
Sbjct: 547 LAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNI-------LLN 599

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
           GLCK G  + A     +L     + + VTYN  I A C D+++ +A+DL  +ME KG+ P
Sbjct: 600 GLCKEGMTEKALNFFNTLIEEREV-DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEP 658

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           +   + + +   +   + S+  ELL+    +
Sbjct: 659 DRFTYNSFISLLMEDGKLSETDELLKKFSGK 689



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 121/248 (48%), Gaps = 13/248 (5%)

Query: 13  KPNTVTYNTIIDGLCKE----GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           K N VT+N  +  LCKE        K KEL   +     +P++VTY++LI  +    D +
Sbjct: 377 KANQVTHNISLKWLCKEEKREAVTRKVKEL---VDMHGFSPDIVTYHTLIKAYLKVGDLS 433

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A  +  EM  +G++ + +T N I+D LCK RK+DEA  LL+   + G   D       V
Sbjct: 434 GALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDE------V 487

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            YG LI G  +  K++ A E+   + +  + P V T+N  I  LC+  + + A + F ++
Sbjct: 488 TYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDEL 547

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
              G+ P+   F +++  + ++    K  E      K +  P     +I+++ L K  ++
Sbjct: 548 AESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMT 607

Query: 249 LNSIPQFN 256
             ++  FN
Sbjct: 608 EKALNFFN 615



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 10/238 (4%)

Query: 13  KPNTVTYNTIIDGLCK--EGF-VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           KPN +T NT++ GL +    F +  A+E+F  M    ++ NV T+N L++G+C      +
Sbjct: 163 KPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLED 222

Query: 70  AEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           A  +   M+    +  D VT+N I+  + K  ++ +   LL  M + G+ P      N V
Sbjct: 223 ALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVP------NRV 276

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+ G CK+G LK A ++ + + +  ++P++ TYNI I+ LCN   M +  +L   M
Sbjct: 277 TYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAM 336

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +   + P+ V + TL+        + +  +L+  M+   V       +I +  L K E
Sbjct: 337 KSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEE 394



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 109/231 (47%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG---NEA 70
           P+   ++  +     EG    A ++F +M    + PN++T N+L+ G          + A
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIVA 129
             +F +M+  G+  +V TFNV+++  C   K+++A  +L+ M+ +  V PD       V 
Sbjct: 189 REVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDN------VT 242

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++  + K G+L + +EL   + + GL+PN VTYN  ++  C    + +A  +   M+
Sbjct: 243 YNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMK 302

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              V P+   +  L+          + +EL+ +M    + P     + ++D
Sbjct: 303 QTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLID 353



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 21/159 (13%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T N +++GLCKEG  +KA   F  + +E    + VTYN++I  FC      EA  
Sbjct: 588 KPDNYTCNILLNGLCKEGMTEKALNFFNTLIEER-EVDTVTYNTMISAFCKDKKLKEAYD 646

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL------------DLMIQGGVRP- 119
           L  EM ++GL+ D  T+N  +  L ++ K+ E   LL            DL ++    P 
Sbjct: 647 LLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSMKRDLQVETEKNPA 706

Query: 120 --DAFCEINI--VAYGCLIDGLCKIGKLKNARELSQSLT 154
             ++  E+N   +AY  +ID LC  G+LK   E S+S T
Sbjct: 707 TSESKEELNTEAIAYSDVIDELCSRGRLK---EHSRSYT 742


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY   I G  +      A +   +M++  + PN V    LI+ +C      EA  
Sbjct: 519 KPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACS 578

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +  M+D+G+  D  T+ V+M+ L KN K+D+A  +   M   G+ PD F      +YG 
Sbjct: 579 AYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVF------SYGV 632

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  K+G ++ A  +   +   GL PNV+ YN+ +   C   +++KA +L  +M VKG
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + PN V + T++  + +  + ++   L   M  + ++P + + + +VD
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 129/272 (47%), Gaps = 34/272 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y  +I+G  K G + KA  +F +M +E + PNV+ YN L+ GFC + +  +A+ L
Sbjct: 625 PDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL 684

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
             EM  +GL  + VT+  I+D  CK+  + EA RL D M   G+ PD+F           
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744

Query: 123 -----------------CEINIVAYGCLIDGLCKIGK--LKNA---RELSQSLTRAGLMP 160
                            C  +   +  LI+ + K GK  LK     R +  S  R G  P
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG-KP 803

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           N VTYNI I  LC +  ++ A +LF  M+   + P  + +T+L+  + +    +++  + 
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
                  + P   + S+I++  +K  ++  ++
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN++I GL K   +D+A+   ++M +  + PN  TY + I G+  A++   A+  
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM + G+  + V    +++E CK  K+ EA      M+  G+  DA        Y  L
Sbjct: 545 VKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDA------KTYTVL 598

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GL K  K+ +A E+ + +   G+ P+V +Y + I+       M KA  +F +M  +G+
Sbjct: 599 MNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL 658

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN +I+  L+  F R  E  K  ELL  M  + + P A     I+D
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIID 705



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 125/258 (48%), Gaps = 36/258 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN + YN ++ G C+ G ++KAKEL  +M  + ++PN VTY ++I G+C + D  EA  L
Sbjct: 660 PNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRL 719

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA---------------------------- 105
           F EM  +GL  D   +  ++D  C+   ++ A                            
Sbjct: 720 FDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKF 779

Query: 106 ------TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
                 T +L+ ++ G    D F + N V Y  +ID LCK G L+ A+EL   +  A LM
Sbjct: 780 GKTELKTEVLNRLMDGSF--DRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM 837

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P V+TY   ++      +  +   +F +    G+ P+ ++++ ++ +F+++  T+K + L
Sbjct: 838 PTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVL 897

Query: 220 LRSMDKRNVMPYASILSI 237
           +  M  +N +     LSI
Sbjct: 898 VDQMFAKNAVDDGCKLSI 915



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    Y ++I+G C+E  V +  EL ++MK  NI  +  TY +++ G C + D + A  +
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNI 439

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G + +VV +  ++    +N +  +A R+L  M + G+ PD FC      Y  L
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC------YNSL 493

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL K  ++  AR     +   GL PN  TY   I       +   A     +M   GV
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            PN V+ T L+  + +K +  +     RSM  + ++  A   +++++ L KN+
Sbjct: 554 LPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY  +++GL K   VD A+E+F +M+ + I P+V +Y  LI+GF    +  +A  +F EM
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++ GL  +V+ +N+++   C++ ++++A  LLD M   G+ P+A      V Y  +IDG 
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNA------VTYCTIIDGY 707

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G L  A  L   +   GL+P+   Y   +   C    +++A  +F     KG A + 
Sbjct: 708 CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASST 766

Query: 198 VIFTTLMPSFIRKNETSKVIELL-RSMD---KRNVMPYASILSIIVDLLVK 244
             F  L+    +  +T    E+L R MD    R   P     +I++D L K
Sbjct: 767 APFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 9/224 (4%)

Query: 10  VVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           ++CK   P   TY+ +IDGLCK   ++ AK L ++M    ++ +  TY+ LI G     +
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A+ L  EM+  G+      ++  +  + K   M++A  L D MI  G+ P A     
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQA----- 382

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             AY  LI+G C+   ++   EL   + +  ++ +  TY   +  +C+   +D A+++  
Sbjct: 383 -QAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVK 441

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +M   G  PN VI+TTL+ +F++ +     + +L+ M ++ + P
Sbjct: 442 EMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 104/213 (48%), Gaps = 6/213 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY T++ G+C  G +D A  +  +M      PNVV Y +LI  F   +   +A  +  EM
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEM 478

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            ++G+  D+  +N ++  L K ++MDEA   L  M++ G++P+AF       YG  I G 
Sbjct: 479 KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAF------TYGAFISGY 532

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
            +  +  +A +  + +   G++PN V     I+  C  E++ +A   +  M  +G+  + 
Sbjct: 533 IEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDA 592

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             +T LM    + ++     E+ R M  + + P
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAP 625



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 8/238 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  KP    Y+  I  + KEG ++KAK LF  M    + P    Y SLI G+C   +  
Sbjct: 342 GINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVR 399

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +   L +EM  R +     T+  ++  +C +  +D A  ++  MI  G RP      N+V
Sbjct: 400 QGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP------NVV 453

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI    +  +  +A  + + +   G+ P++  YN  I  L   ++MD+A    ++M
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM 513

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
              G+ PN   +   +  +I  +E +   + ++ M +  V+P   + + +++   K E
Sbjct: 514 VENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKE 571



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 5/163 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN VTYN +ID LCKEG ++ AKELF QM++ N+ P V+TY SL++G  Y   G  AE 
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNG--YDKMGRRAEM 859

Query: 73  --LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F E +  G++ D + ++VI++   K     +A  L+D M       D  C+++I   
Sbjct: 860 FPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDG-CKLSISTC 918

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             L+ G  K+G+++ A ++ +++ R   +P+  T    I+  C
Sbjct: 919 RALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 29/246 (11%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND-- 66
           G+   P       ++D L +   +D   +++  M + N+  +V TY+ LI   C A +  
Sbjct: 179 GLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQ 238

Query: 67  -------GNEAEY------------LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
                    E E+            L   M+ +GL     T++V++D LCK +++++A  
Sbjct: 239 LGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKS 298

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           LL  M   GV  D         Y  LIDGL K      A+ L   +   G+      Y+ 
Sbjct: 299 LLVEMDSLGVSLDNH------TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDC 352

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I  +  +  M+KA  LF  M   G+ P    + +L+  + R+    +  ELL  M KRN
Sbjct: 353 CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRN 412

Query: 228 VM--PY 231
           ++  PY
Sbjct: 413 IVISPY 418


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V ++  IDGL K+G V++A  +FL+M  + + PN   YNSLI GFC     NEA  L
Sbjct: 579 PDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKL 638

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  RGL  D+ T N+I+  LCK  +M  A  +   M Q G+ PD      I+ Y  L
Sbjct: 639 EKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPD------IITYNTL 692

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK   + NA  L   +  +G  P++ TYNI IH  C+  +M++A  +  ++   G+
Sbjct: 693 INGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGI 752

Query: 194 APNCVIFTTLM 204
            PN V + +++
Sbjct: 753 VPNTVTYNSML 763



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN   YN +I+  C  G    A   F  M +   NP VVT+N++I+ FC   +  EA 
Sbjct: 297 CEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEAR 356

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  + + G   + + +N +M+   K R++D+A  L + M + G+ PD       + + 
Sbjct: 357 KLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDG------ITFN 410

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G  K G+ ++   L + ++  GL+P+   ++I++  LC   ++D+A +  +DM  K
Sbjct: 411 ILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEK 470

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           G++P+ + F +++ ++ +     K  E  + M    + P  S  S
Sbjct: 471 GLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCS 515



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 123/269 (45%), Gaps = 41/269 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  VT+NT+I+  CKEG V +A++LF  +K+   +PN + YN+L++G+    + ++A 
Sbjct: 332 CNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQAN 391

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+ EM  +G+  D +TFN+++    K  + ++  RLL  +   G+ PD         + 
Sbjct: 392 MLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDR------SLFD 445

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA-------------------- 171
             + GLC  G+L  A E    +   GL P+++ +N  I A                    
Sbjct: 446 ISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHF 505

Query: 172 ---------------LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
                          L  + ++ +A +L   M  KG++ N + FT L+  F ++ +    
Sbjct: 506 GLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGA 565

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKN 245
             L   M++R + P     S  +D L K 
Sbjct: 566 QSLWGEMERRGIFPDVVAFSAFIDGLSKQ 594



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 110/203 (54%), Gaps = 8/203 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            FG+   P+T +  +++ GL   G + +A EL  QM ++ ++ N + +  L+  F    D
Sbjct: 504 HFGLTPSPSTCS--SLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGD 561

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              A+ L+ EM  RG+  DVV F+  +D L K   ++EA  +   M++ G+ P+ F    
Sbjct: 562 VVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNF---- 617

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             AY  LI G CK GKL  A +L + +   GL+P++ T N+ I  LC   +M  A ++F+
Sbjct: 618 --AYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFM 675

Query: 187 DMEVKGVAPNCVIFTTLMPSFIR 209
           DM   G++P+ + + TL+  + +
Sbjct: 676 DMHQTGLSPDIITYNTLINGYCK 698



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 123/232 (53%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   ++  + GLC  G +D+A E  + M ++ ++P+++ +NS+I  +  A   ++A   
Sbjct: 439 PDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEA 498

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  M+  GL     T + ++  L  N ++ EAT L+  MI+ G+       +N +A+  L
Sbjct: 499 YKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGL------SVNNMAFTVL 552

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +D   K G +  A+ L   + R G+ P+VV ++  I  L     +++A+++FL+M  KG+
Sbjct: 553 LDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGL 612

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            PN   + +L+  F +  + ++ ++L + M  R ++P     ++I+  L K 
Sbjct: 613 IPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQ 664



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 7/156 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T N II GLCK+G +  A  +F+ M    ++P+++TYN+LI+G+C A D   A+ L
Sbjct: 649 PDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNL 708

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G   D+ T+N+ +   C +R+M+ A  +LD ++  G+ P      N V Y  +
Sbjct: 709 VNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVP------NTVTYNSM 762

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           ++G+C    L  A  L+  L +   +PNVVT N+ +
Sbjct: 763 LNGVCS-DILDRAMILTARLLKMAFVPNVVTANLLL 797



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 6/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N + +  ++D   K G V  A+ L+ +M+   I P+VV +++ I G        EA  +F
Sbjct: 545 NNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVF 604

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           +EM+ +GL  +   +N ++   CK  K++EA +L  +M   G+ PD F          +I
Sbjct: 605 LEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTT------NMII 658

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GLCK G++++A  +   + + GL P+++TYN  I+  C    M  A +L   M   G  
Sbjct: 659 GGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSN 718

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           P+   +   +  F      ++ + +L  +    ++P
Sbjct: 719 PDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVP 754



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 8/237 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV  +P+      +   L + G      +LF  +      P   T++ +I GFC   
Sbjct: 223 REVGV--RPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKG 280

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             +  E L   M     + +   +N++++  C   +  +A    +LMI+ G  P      
Sbjct: 281 CIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNP------ 334

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V +  +I+  CK G +  AR+L   L   G  PN + YN  ++      ++D+A+ L+
Sbjct: 335 TVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLY 394

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            +M  KG+AP+ + F  L+    +         LL+ +    ++P  S+  I V  L
Sbjct: 395 EEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGL 451



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 12/225 (5%)

Query: 21  TIIDGLCKEGFVD-----KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           +++D L +  FV+     +A E+  +M++  + P+      L        D      LF 
Sbjct: 197 SVLDSLMR-AFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFK 255

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           +++ RG Q    TF+ I+   C+   +     LL LM      P   CE N  AY  +I+
Sbjct: 256 DVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLM------PKFHCEPNAFAYNIVIN 309

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
             C  G+  +A      +   G  P VVT+N  I+A C +  + +A  LF  ++  G +P
Sbjct: 310 ACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSP 369

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           N +++ TLM  +++  E  +   L   M K+ + P     +I+V 
Sbjct: 370 NAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVS 414



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR +     P+  TYN  I G C    +++A  +  ++    I PN VTYNS+++G C +
Sbjct: 710 NRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVC-S 768

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           +  + A  L   ++      +VVT N+++ +  K + M E T
Sbjct: 769 DILDRAMILTARLLKMAFVPNVVTANLLLSQFYK-QGMPERT 809



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 10/202 (4%)

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           +SL+  F  A  G +A  +   M + G++       ++   L +        +L   +I+
Sbjct: 200 DSLMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIR 259

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            G +P  +       +  +I G C+ G +     L   + +    PN   YNI I+A C 
Sbjct: 260 RGPQPCKY------TFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCI 313

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
             +   A   F  M  +G  P  V F T++ +F ++    +  +L   + +    P A  
Sbjct: 314 RGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNA-- 371

Query: 235 LSIIVDLLVKNEISLNSIPQFN 256
             I+ + L+   + +  I Q N
Sbjct: 372 --IMYNTLMNGYVKMREIDQAN 391


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 129/242 (53%), Gaps = 11/242 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN+II G+C+EG+VD+A ++   +  +   P+V+TYN L+ G            
Sbjct: 228 QPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYE 287

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ RG +++VVT++V++  +C++ K++E   LL  M + G++PD +C      Y  
Sbjct: 288 LMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYC------YDP 341

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LCK G++  A E+   +   G +P++V YN  +  LC  ++ D+A  +F  +   G
Sbjct: 342 LIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVG 401

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIV-DLLVKNEI 247
            +PN   + ++  +        + + ++  M  + V P    Y S++S +  D +V   I
Sbjct: 402 CSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAI 461

Query: 248 SL 249
            L
Sbjct: 462 EL 463



 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 114/230 (49%), Gaps = 10/230 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ VTYN +I  LC  G +D A E   Q+  EN  P VVTY  LI         +EA  
Sbjct: 158 SPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMK 217

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM++  LQ D+ T+N I+  +C+   +D A +++  +   G  PD      ++ Y  
Sbjct: 218 LLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPD------VITYNI 271

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GL   GK +   EL   +   G   NVVTY++ I ++C D ++++   L  DM+ KG
Sbjct: 272 LLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKG 331

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           + P+   +  L+ +  ++      IE+L  M     +P    Y +IL+ +
Sbjct: 332 LKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACL 381



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 125/253 (49%), Gaps = 42/253 (16%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V    +I GL     +DKA ++ + + + + +P+++ YN++I GFC AN  + A  
Sbjct: 89  KPDVVLCTKLIHGLFTSKTIDKAIQV-MHILENHGHPDLIAYNAIITGFCRANRIDSAYQ 147

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELC-----------KNR--------------------- 100
           +   M ++G   D+VT+N+++  LC           KN+                     
Sbjct: 148 VLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATL 207

Query: 101 ---KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
               +DEA +LLD M++  ++PD F       Y  +I G+C+ G +  A ++  S++  G
Sbjct: 208 LQGGIDEAMKLLDEMLEINLQPDMF------TYNSIIRGMCREGYVDRAFQIISSISSKG 261

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
             P+V+TYNI +  L N  + +  ++L  DM  +G   N V ++ L+ S  R  +  + +
Sbjct: 262 YAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGV 321

Query: 218 ELLRSMDKRNVMP 230
            LL+ M K+ + P
Sbjct: 322 GLLKDMKKKGLKP 334



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 6/174 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V YNTI+  LCK+   D+A  +F ++ +   +PN  +YNS+            A 
Sbjct: 367 CVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRAL 426

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAY 130
            + +EM+D+G+  D +T+N ++  LC++  +DEA  LL D+ ++      + C+ ++V+Y
Sbjct: 427 GMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMES-----SECKPSVVSY 481

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ GLCK+ ++ +A E+  ++   G  PN  TY   I  +     ++ A DL
Sbjct: 482 NIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDL 535



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 8/194 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   Y+ +I  LCKEG VD A E+   M  +   P++V YN+++   C     +EA  
Sbjct: 333 KPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALS 392

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F ++ + G   +  ++N +   L        A  ++  M+  GV PD       + Y  
Sbjct: 393 IFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDG------ITYNS 446

Query: 133 LIDGLCKIGKLKNAREL--SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           LI  LC+ G +  A EL     +  +   P+VV+YNI +  LC   ++  A ++   M  
Sbjct: 447 LISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVD 506

Query: 191 KGVAPNCVIFTTLM 204
           KG  PN   +T L+
Sbjct: 507 KGCRPNETTYTFLI 520



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 8/146 (5%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C PN  +YN++   L   G   +A  + L+M D+ ++P+ +TYNSLI   C     +E
Sbjct: 400 VGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDE 459

Query: 70  AEYLFI--EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           A  L +  EM     +  VV++N+++  LCK  ++ +A  +L  M+  G RP      N 
Sbjct: 460 AIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRP------NE 513

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSL 153
             Y  LI+G+   G L +AR+L+ +L
Sbjct: 514 TTYTFLIEGIGFGGCLNDARDLATTL 539



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           C A + NE+ Y    ++++G + DVV    ++  L  ++ +D+A +++ ++   G  PD 
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG-HPD- 125

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                ++AY  +I G C+  ++ +A ++   +   G  P++VTYNI I +LC+   +D A
Sbjct: 126 -----LIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSA 180

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +    +  +   P  V +T L+ + + +    + ++LL  M + N+ P
Sbjct: 181 LEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQP 229



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 62/104 (59%), Gaps = 6/104 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELF--LQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           P+ +TYN++I  LC++G VD+A EL   ++M+     P+VV+YN ++ G C  +  ++A 
Sbjct: 439 PDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAI 498

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDEL----CKNRKMDEATRLLDL 111
            +   M+D+G + +  T+  +++ +    C N   D AT L+++
Sbjct: 499 EVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVNM 542


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 121/211 (57%), Gaps = 6/211 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYNT+I+G  KEG +  A ++F +M   +++PN VTYN+LI G C+  D  EA  L
Sbjct: 336 PNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRL 395

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   GL+ + VT+  +++ LCK+ K + A RLL+ M     R +    +  +AY  L
Sbjct: 396 LDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERM-----RVNDMV-VGHIAYTVL 449

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK G L  A +L  ++ + G+ P+V+TY+  I+  C    +  A ++   M   G+
Sbjct: 450 IDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGL 509

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
             N +I++TL+ +F +    ++ +++   M+
Sbjct: 510 VLNKIIYSTLIYNFCQHGNVTEAMKVYAVMN 540



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N +I+GLC EG + KA  L  QM++    P +VTYN+L++ +C       A  L
Sbjct: 231 PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIEL 290

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M+ +G+++DV T+NV +D LC N +  +A  LL  M +  + P      N V Y  L
Sbjct: 291 IDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISP------NEVTYNTL 344

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G  K GK+  A ++   +++  L PN VTYN  I   C+    ++A  L   ME  G+
Sbjct: 345 INGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGL 404

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             N V + TL+    +  +      LL  M   +++      ++++D L KN
Sbjct: 405 RLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKN 456



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 9/233 (3%)

Query: 10  VVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           ++CK    +  TYN  ID LC      KA  L  +M+ E I+PN VTYN+LI+GF     
Sbjct: 294 MICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGK 353

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              A  +F EM    L  + VT+N ++   C     +EA RLLD M   G+R      +N
Sbjct: 354 IGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLR------LN 407

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            V YG L++GLCK  K + A+ L + +    ++   + Y + I  LC +  +D+A  L  
Sbjct: 408 EVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVG 467

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +M   GV P+ + +++L+  F R        E++  M +  ++    I S ++
Sbjct: 468 NMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLI 520



 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 30/247 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN++TY+ II+G    G    A   F  M     +P+  TY SL+ G C   +  EA+  
Sbjct: 581 PNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKF 640

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------CE 124
              +       D V +N ++ E CK+  + EA  L D M+Q  V PD++         C 
Sbjct: 641 LNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCR 700

Query: 125 ---------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                 N V Y CL+DGL K G  K A    + + + G  P+ V
Sbjct: 701 KGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTV 760

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            +N  I +     QM KA+D F  M   GV PN   +  L+  F +K    + + L  +M
Sbjct: 761 AFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTM 820

Query: 224 DKRNVMP 230
            +  + P
Sbjct: 821 MREGIFP 827



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  T N I+  + K+   +    LF +M D+ I PNV T+N LI+G C   +  +A  
Sbjct: 195 KPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGN 254

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M + G    +VT+N +++  CK  +   A  L+D MI  G+  D      +  Y  
Sbjct: 255 LLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEAD------VCTYNV 308

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            ID LC   +   A  L + + +  + PN VTYN  I+    + ++  A  +F +M    
Sbjct: 309 FIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFD 368

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
           ++PNCV +  L+       +  + + LL  M+    + N + Y ++L
Sbjct: 369 LSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLL 415



 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TY+++I+G C+ G +  AKE+  +M    +  N + Y++LI+ FC   +  EA  +
Sbjct: 476 PDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKV 535

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  M   G  +D  T NV++  LC++ K+ EA + L  M + G+ P      N + Y C+
Sbjct: 536 YAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVP------NSITYDCI 589

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G   IG   NA      + + G  P+  TY   +  LC    + +A      +     
Sbjct: 590 INGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPG 649

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           A + V++ TL+    +     + + L   M + NV+P    Y+S+L+
Sbjct: 650 AVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLT 696



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 6/220 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C      ++ +I    KEG +D A E F  +      P+V T N ++            
Sbjct: 158 LCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELV 217

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF EM D+G+  +V TFN++++ LC    + +A  LL  M + G  P       IV Y
Sbjct: 218 WSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVP------TIVTY 271

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L++  CK G+ K A EL   +   G+  +V TYN+ I  LC + +  KA+ L   M  
Sbjct: 272 NTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRK 331

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + ++PN V + TL+  F+++ +     ++   M K ++ P
Sbjct: 332 EMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSP 371



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           ++V YNT++   CK G + +A  LF +M   N+ P+  TY+SL+ G C       A  LF
Sbjct: 652 DSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLF 711

Query: 75  IEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M RG L  + V +  ++D L K      A    + M++ G  PD       VA+  +
Sbjct: 712 GTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDT------VAFNAI 765

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID   + G++  A +   ++   G+ PN+ TYNI +H     + + +   L+  M  +G+
Sbjct: 766 IDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGI 825

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+ + F +L+    +       ++LL  M
Sbjct: 826 FPDKLTFHSLILGLSKSGIPDLGVKLLGKM 855



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 128/299 (42%), Gaps = 66/299 (22%)

Query: 6    REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
            R +GV   PN  TYN ++ G  K+  + +   L+  M  E I P+ +T++SLI G   + 
Sbjct: 786  RWWGVC--PNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSG 843

Query: 66   DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----- 120
              +    L  +M+  G  +D  TFN+++++  ++ KM +A  L++ M   GV PD     
Sbjct: 844  IPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYN 903

Query: 121  ----------AFCEINIV--------------AYGCLIDGLCKIGKLKNA---------- 146
                      AF E  +V               Y  LI+G+C++G ++ A          
Sbjct: 904  HIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEAL 963

Query: 147  ----RELSQS---------------------LTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                 E+++S                     + R  L+P + T+   +H  C D ++ +A
Sbjct: 964  GFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEA 1023

Query: 182  HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              L   ME+ G+  + V +  L+       +++   EL   M  R++ P  +  +++VD
Sbjct: 1024 LKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVD 1082



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 8/187 (4%)

Query: 7    EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            E GV+  P    Y T+I+G+C+ G +  A +L  +M+      + V  ++++ G  +   
Sbjct: 927  ENGVI--PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGK 984

Query: 67   GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              +A  +   M+   L   + TF  +M   C++ K+ EA +L  +M   G++ D      
Sbjct: 985  TEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLD------ 1038

Query: 127  IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            +VAY  LI G+C  G    A EL + +    L PN+ TY + + A+     + +   L  
Sbjct: 1039 VVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLT 1098

Query: 187  DMEVKGV 193
            D++ +G+
Sbjct: 1099 DLQERGL 1105



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+  TYN I +GL K+    ++  +  +M +  + P    Y +LI+G C   D   A  L
Sbjct: 897  PDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKL 956

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              EM   G  S  V  + ++  L    K ++A  +LD M++  + P       I  +  L
Sbjct: 957  KDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLP------TIATFTTL 1010

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            +   C+  K+  A +L   +   GL  +VV YN+ I  +C +     A +L+ +M  + +
Sbjct: 1011 MHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDL 1070

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
             PN   +  L+ +    N   +  +LL  + +R ++ +  
Sbjct: 1071 CPNITTYAVLVDAISAANNLIQGEKLLTDLQERGLISWGG 1110



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 7/226 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y  ++DGL K G    A   F +M  +   P+ V +N++I          +A   
Sbjct: 722 PNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDF 781

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   G+  ++ T+N+++    K + +     L   M++ G+ PD       + +  L
Sbjct: 782 FSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDK------LTFHSL 835

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL K G      +L   +   G + +  T+NI I+      +M KA DL   M   GV
Sbjct: 836 ILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGV 895

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSII 238
            P+   +  +     +K+   +   +L  M +  V+P +A  +++I
Sbjct: 896 FPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLI 941



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           F++++    K   +D A    +L+   G +P  +    I+A       + K  + +    
Sbjct: 166 FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILA------SMVKDKRTELVWS 219

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           L + ++  G+ PNV T+NI I+ LC +  + KA +L   ME  G  P  V + TL+  + 
Sbjct: 220 LFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYC 279

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
           +K      IEL+  M  + +       ++ +D L  N  S
Sbjct: 280 KKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 319



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            K + V YN +I G+C  G    A EL+ +M+  ++ PN+ TY  L+     AN+  + E 
Sbjct: 1036 KLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEK 1095

Query: 73   LFIEMMDRGLQS 84
            L  ++ +RGL S
Sbjct: 1096 LLTDLQERGLIS 1107


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V++N+++ G C+ G + +A  LF ++K  ++ P V+TYN+LIHG C     + A  L
Sbjct: 353 PDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRL 412

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM D+GL  D+ T+ ++++   K   +  A    + M+  G++PD F      AY   
Sbjct: 413 KKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRF------AYNTR 466

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G  KI     A  + + +  AG  P+V+TYN+ +HALC     ++A DL  +M   G+
Sbjct: 467 IVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGL 526

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+ V +T+++  F++     K  E+   M  + V P     ++++
Sbjct: 527 IPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 76/287 (26%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYNT+I GLC  G++D A  L  +M D+ + P++ TY  L++G       + A   
Sbjct: 388 PTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGF 447

Query: 74  FIEMMDRGLQSD-----------------------------------VVTFNVIMDELCK 98
           F EM+ +GL+ D                                   V+T+NV +  LC+
Sbjct: 448 FNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ 507

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
               +EA  LL+ M+  G+ PD       V Y  +I+G  K G L+ ARE+   +   G+
Sbjct: 508 QGNFEEACDLLENMVSDGLIPDH------VTYTSIINGFVKNGHLRKAREVFNEMLSKGV 561

Query: 159 MPNVVTYNITIHA-----------------------------------LCNDEQMDKAHD 183
            P+VVTY + IHA                                   LC   +MD+A+ 
Sbjct: 562 APSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYK 621

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            F +ME KG+ PN   +T L+          + + L R M  R + P
Sbjct: 622 YFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQP 668



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 8/234 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG+  KP  VTYNT++D  CKEG VD+A EL  +M++    PN VTYN L++G     +
Sbjct: 208 QFGI--KPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGE 265

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A+ L  EM++ GL     T+N +++  C+     EA  L++ M+     P       
Sbjct: 266 LEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFP------T 319

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  L+ GLCK  ++   R     + ++   P++V++N  ++  C    + +A  LF 
Sbjct: 320 LSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFD 379

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +++ + + P  + + TL+            + L + M  + + P     +I+V+
Sbjct: 380 ELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVN 433



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 6/165 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY +II+G  K G + KA+E+F +M  + + P+VVTY  LIH        + A   
Sbjct: 528 PDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMY 587

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+++ + ++V+T+N I++ LC  R+MDEA +  D M + G+ P+ F      +Y  L
Sbjct: 588 FSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKF------SYTIL 641

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           I+  C +G  + A  L + +    + P+  T+++ +  L  D Q+
Sbjct: 642 INESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQV 686



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N I+  L  E  + KAK ++  M+   I P VVTYN+++  +C     ++A  L
Sbjct: 178 PDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALEL 237

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +RG   + VT+NV+++ L K  ++++A  L++ M+  G+   A+       Y  L
Sbjct: 238 LSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY------TYNPL 291

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G C+ G    A +L + +      P + TYN  ++ LC   Q+      F DM     
Sbjct: 292 INGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKF 351

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V F +L+  + R    S+   L   +  R+++P
Sbjct: 352 TPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVP 388



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 113/263 (42%), Gaps = 29/263 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +++GL K+G +++AK L  +M +  +N +  TYN LI+GFC      EA 
Sbjct: 246 CYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAF 305

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            L  EM++R     + T+N +M  LCK  ++         M++    PD          +
Sbjct: 306 DLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGY 365

Query: 123 CEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C                       ++ Y  LI GLC  G L  A  L + +T  GL P++
Sbjct: 366 CRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDI 425

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            TY I ++       +  A   F +M  KG+ P+   + T +   ++  +TS    +   
Sbjct: 426 FTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEE 485

Query: 223 MDKRNVMPYASILSIIVDLLVKN 245
           M      P     ++ V  L + 
Sbjct: 486 MLAAGFPPDVITYNVFVHALCQQ 508



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN  +  LC++G  ++A +L   M  + + P+ VTY S+I+GF       +A  +
Sbjct: 493 PDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREV 552

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G+   VVT+ V++      + +D A      M++  V        N++ Y  +
Sbjct: 553 FNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSV------PANVITYNAI 606

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLC   ++  A +    +   G++PN  +Y I I+  CN    ++A  L+ +M  + +
Sbjct: 607 INGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKI 666

Query: 194 APNCVIFTTLMPSFIRKNETSKV 216
            P+    +  + +  R  +   V
Sbjct: 667 QPDSFTHSVFLKNLHRDYQVHAV 689



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 6/193 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           +F +M    + P+V   N ++      N  ++A+ ++  M   G++  VVT+N ++D  C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  ++D+A  LL  M + G  P      N V Y  L++GL K G+L+ A+ L + +  +G
Sbjct: 227 KEGRVDQALELLSEMQERGCYP------NDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L  +  TYN  I+  C      +A DL  +M  +   P    + TLM    +  + + V 
Sbjct: 281 LNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVR 340

Query: 218 ELLRSMDKRNVMP 230
                M K    P
Sbjct: 341 LRFSDMLKSKFTP 353



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M+  GL  DV   N I+  L     + +A  +  +M Q G++P       +V Y  
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKP------TVVTYNT 220

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D  CK G++  A EL   +   G  PN VTYN+ ++ L    ++++A  L  +M   G
Sbjct: 221 MLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  +   +  L+  F +K    +  +L+  M  R   P  S  + ++  L K
Sbjct: 281 LNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCK 332


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 7/237 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NTI+   CK GFVD AK  F  M    + P+  +YN LIHG C A    EA  
Sbjct: 278 QPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALD 337

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M + GL+ D+VT+N++         ++ A  ++  M+  G  P      N+V Y  
Sbjct: 338 LKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNP------NLVTYTV 391

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C+IG ++ A +L + +   G   ++++  + + +LC   Q+D A  LF +ME  G
Sbjct: 392 LICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANG 451

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+ + ++TL+    ++ E  + I L   M    ++P + I  +I++ L  K +IS
Sbjct: 452 LRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKIS 508



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN++ +  I+ GLC++G + +A+  F  +   N++ +++ YN +I G+    +  EA  L
Sbjct: 489 PNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKL 548

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + ++ ++G+   +VTFN +M   C NRK+ +A RLLD +   G+ P+A      V Y  L
Sbjct: 549 YKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNA------VTYTTL 602

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++  C+ G +++  EL   +    + P  +TY + I  LC   ++ ++  L  DM+  G+
Sbjct: 603 MNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGL 662

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+ V + T++ +F +  +  K  +L   M   N+ P +   +I+++
Sbjct: 663 TPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILIN 709



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYN +  G    G ++ A  +  +M  +  NPN+VTY  LI G C   +  EA  
Sbjct: 348 EPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALK 407

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM+  G Q  +++  V++  LCK+R++D A +L   M   G+RPD      ++ Y  
Sbjct: 408 LYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPD------LITYST 461

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G+++ A  L + +    ++PN + +   +  LC   ++ +A   F  +    
Sbjct: 462 LIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSN 521

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++ + +++  ++  +I++  T + ++L + + ++ + P
Sbjct: 522 LSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISP 559



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + ++   ++  LCK   VD A +LF +M+   + P+++TY++LIHG C   +  +A  L+
Sbjct: 420 SIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLY 479

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M    +  + +    I+  LC+  K+ +A    D +I   +  D      I+ Y  +I
Sbjct: 480 EKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLD------IILYNIMI 533

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G  + A +L + L   G+ P +VT+N  ++  C + ++ +A  L   +++ G+ 
Sbjct: 534 DGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLE 593

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           PN V +TTLM  +  +     ++ELL  M  + + P     ++++  L K 
Sbjct: 594 PNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQ 644



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TY+T+I GLCK+G V +A  L+ +M    I PN + + +++ G C     ++A  
Sbjct: 453 RPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARM 512

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F  ++   L  D++ +N+++D   K     EA +L   + + G+ P       IV +  
Sbjct: 513 YFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISP------TIVTFNS 566

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G C   KL  AR L  ++   GL PN VTY   ++  C +  M    +L  +M+ K 
Sbjct: 567 LMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKA 626

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P  + +T ++    ++ +  +  +LL  MD   + P
Sbjct: 627 IGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTP 664



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VT+N+++ G C    + +A+ L   +K   + PN VTY +L++ +C   +      L
Sbjct: 559 PTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLEL 618

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  + +    +T+ V++  LCK  K+ E+ +LL+ M   G+ PD       V+Y  +
Sbjct: 619 LSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQ------VSYNTI 672

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I   CK   ++ A +L   +    L P  VTYNI I+  C    +  A +L + ++ + V
Sbjct: 673 IQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKV 732

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             N   +TT++ +   K +  K +   R M
Sbjct: 733 NLNKYAYTTIIKAHCAKGDVDKAVVYFRQM 762



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 87/180 (48%), Gaps = 6/180 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTY T+++  C+EG +    EL  +MK + I P  +TY  +I G C      E+  
Sbjct: 593 EPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQ 652

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M   GL  D V++N I+   CK R M +A +L D M+   + P +      V Y  
Sbjct: 653 LLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTS------VTYNI 706

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C  G LK+A  L  SL    +  N   Y   I A C    +DKA   F  M  KG
Sbjct: 707 LINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKG 766



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 38/241 (15%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH--------------- 59
           + V ++ +     +   V  A  + ++MKD N   ++ TYNSL++               
Sbjct: 178 SNVVWDMLACAYSRSAMVHDALFVLVKMKDLNFIVSIQTYNSLLYNLRHSNIMWDVYNEI 237

Query: 60  -----------------GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102
                            G C  +   +A   F +   +  Q  VV+FN IM   CK   +
Sbjct: 238 KVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFV 297

Query: 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           D A     +M++ G+ PDA+      +Y  LI GLC  G +  A +L   +   GL P++
Sbjct: 298 DVAKSFFCMMLKHGLLPDAY------SYNILIHGLCIAGSMGEALDLKNDMENHGLEPDM 351

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTYNI          ++ A ++   M +KG  PN V +T L+    +     + ++L + 
Sbjct: 352 VTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKE 411

Query: 223 M 223
           M
Sbjct: 412 M 412



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P +VTYN +I+G C  G +  A  L + +++  +N N   Y ++I   C   D ++A  
Sbjct: 698 EPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVV 757

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F +M+++G +  +  ++ ++  LCK   + EA     +M+  GV PD         +  
Sbjct: 758 YFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQ------DLFEV 811

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLM 159
           L++   + G L +  EL   + ++G +
Sbjct: 812 LLNAFHQCGHLNSEFELLAEMIKSGWL 838


>gi|224061569|ref|XP_002300545.1| predicted protein [Populus trichocarpa]
 gi|222847803|gb|EEE85350.1| predicted protein [Populus trichocarpa]
          Length = 567

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 129/238 (54%), Gaps = 8/238 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G++  P+  +Y  +++ LCK G +  A +L  +M++     N VTYNSL+ G C   +
Sbjct: 125 ESGII--PDAASYTFLVNNLCKRGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGN 182

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            N++  L  ++M +GL  +  T + +++   K R +DEA +LLD +I  G +P      N
Sbjct: 183 LNQSLQLLDKLMRKGLVPNEFTHSFLLEAAYKERGVDEAMKLLDGIIAKGGKP------N 236

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V+Y  L+ GLCK G+ + A +  + L   G  PNVV+ NI + +LC + + ++A++L  
Sbjct: 237 LVSYNVLLTGLCKEGRTEEAIQFFRDLPSKGFNPNVVSCNIILRSLCCEGRWEEANELVA 296

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +M+ +  +P+ V +  L+ S           ++L  M + +  P A+  + I+  L K
Sbjct: 297 EMDSEERSPSLVTYNILIGSLASHGRIQHAFQVLDEMMRASFQPSAATFNPIISHLCK 354



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 111/261 (42%), Gaps = 28/261 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V+ N I+  LC EG  ++A EL  +M  E  +P++VTYN LI           A  +
Sbjct: 270 PNVVSCNIILRSLCCEGRWEEANELVAEMDSEERSPSLVTYNILIGSLASHGRIQHAFQV 329

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI------------------QG 115
             EMM    Q    TFN I+  LCK  K D   + LD MI                  +G
Sbjct: 330 LDEMMRASFQPSAATFNPIISHLCKEGKADLVVKCLDQMIHHCCNPNDGTFNAIAVLCEG 389

Query: 116 GVRPDAFCEINIVA----------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
           G    AF  I  +           Y  +I  LC+ G    A +L   + ++G +P+  TY
Sbjct: 390 GRVQRAFSIIQSLGNKQNSSTHDFYRGVISSLCRKGNTYPAFQLLYEMIQSGFVPDPYTY 449

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           +  I  LC +  +D+A ++F  +E     P    F  L+  F +   T   +E+   M  
Sbjct: 450 SSLIRGLCVEGMLDEALEIFRLLEENDYRPILGNFNALILGFCKSGRTDLSLEIFEMMIL 509

Query: 226 RNVMPYASILSIIVDLLVKNE 246
           +   P  +  +I+V+ +   E
Sbjct: 510 KGYTPNETTYTILVEGIAHEE 530



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 29/204 (14%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----- 122
           N+A +    ++ +G + DV     ++ +LCK+ KM +ATR++++ I+ G+ PDA      
Sbjct: 79  NDAFFHLEFIVRKGHKPDVAQATQLLYDLCKSNKMKKATRVMEMTIESGIIPDAASYTFL 138

Query: 123 ------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
                                   C  N V Y  L+ GLCK G L  + +L   L R GL
Sbjct: 139 VNNLCKRGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRKGL 198

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +PN  T++  + A   +  +D+A  L   +  KG  PN V +  L+    ++  T + I+
Sbjct: 199 VPNEFTHSFLLEAAYKERGVDEAMKLLDGIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIQ 258

Query: 219 LLRSMDKRNVMPYASILSIIVDLL 242
             R +  +   P     +II+  L
Sbjct: 259 FFRDLPSKGFNPNVVSCNIILRSL 282



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 13/235 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+N II  LCKEG  D   +   QM     NPN  T+N+ I   C   +G   + 
Sbjct: 339 QPSAATFNPIISHLCKEGKADLVVKCLDQMIHHCCNPNDGTFNA-IAVLC---EGGRVQR 394

Query: 73  LFIEMMDRGLQSDVVT---FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            F  +   G + +  T   +  ++  LC+      A +LL  MIQ G  PD +       
Sbjct: 395 AFSIIQSLGNKQNSSTHDFYRGVISSLCRKGNTYPAFQLLYEMIQSGFVPDPY------T 448

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI GLC  G L  A E+ + L      P +  +N  I   C   + D + ++F  M 
Sbjct: 449 YSSLIRGLCVEGMLDEALEIFRLLEENDYRPILGNFNALILGFCKSGRTDLSLEIFEMMI 508

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +KG  PN   +T L+     + E     E+L+ +  R VM   ++  +++   +K
Sbjct: 509 LKGYTPNETTYTILVEGIAHEEEKELAAEVLKELYIRQVMRRNTVERLVMQYDLK 563


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 127/266 (47%), Gaps = 35/266 (13%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ GV  K + VT+N ++ GLC+EG +++A      M +E + P+V+TYN+LI  +C A 
Sbjct: 378 RDKGV--KSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKAR 435

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----- 120
           +  +A  L  EM+  GL+ D  T N ++  LCK ++ +EA  LL    Q G  PD     
Sbjct: 436 NVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYG 495

Query: 121 ----AFCEIN--------------------IVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
               A+ + N                    I  Y  LI GLC IGKL  A +    L + 
Sbjct: 496 TVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKK 555

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL+P+  TYNI IHA C +  ++KA      M      P+ V   TLM       +  K 
Sbjct: 556 GLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKA 615

Query: 217 IELLRSM----DKRNVMPYASILSII 238
           I+L  S      K +V+ Y +++  +
Sbjct: 616 IKLFESWAEKGKKVDVITYNTLIQAL 641



 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 6/212 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y T++    KE   + A  L+ +M    + P++ TYN+LI G C      EA   
Sbjct: 489 PDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDK 548

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+M +GL  D  T+N+I+   CK   +++A +  + M++   +PD      +V    L
Sbjct: 549 LNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPD------VVTCNTL 602

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLC  GKL+ A +L +S    G   +V+TYN  I ALC D  +D A   F DME +G+
Sbjct: 603 MNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGL 662

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            P+   +  ++ +      + +   +L  +D+
Sbjct: 663 QPDAFTYNVVLSALSEAGRSEEAQNMLHKLDE 694



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 113/217 (52%), Gaps = 9/217 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG+   P+ VTYNT++   C++G + +A+ L  +MK E I P   TYN+L+  +      
Sbjct: 239 FGL--SPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWI 296

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG-VRPDAFCEIN 126
            +A  +   M   G + D+ T+NV+   LC+  K+DEA +L D M     V PD      
Sbjct: 297 KQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPD------ 350

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V Y  L+D   K  +  +A  L + +   G+  ++VT+NI +  LC + Q+++A     
Sbjct: 351 VVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLK 410

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            M  +G+AP+ + + TL+ ++ +    +K   L+  M
Sbjct: 411 MMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEM 447



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 6/179 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYNT+I GLC  G + +A +   ++  + + P+  TYN +IH +C   D  +A   
Sbjct: 524 PSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQF 583

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++   + DVVT N +M+ LC + K+++A +L +   + G +      ++++ Y  L
Sbjct: 584 HNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKK------VDVITYNTL 637

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           I  LCK G +  A      +   GL P+  TYN+ + AL    + ++A ++   ++  G
Sbjct: 638 IQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 42/235 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN II   CKEG ++KA +   +M +    P+VVT N+L++G C      +A  L
Sbjct: 559 PDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKL 618

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F    ++G + DV+T+N ++  LCK+  +D A      M   G++PDAF       Y  +
Sbjct: 619 FESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAF------TYNVV 672

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLM---------------------PNVV--------- 163
           +  L + G+ + A+ +   L  +G +                     P V          
Sbjct: 673 LSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNA 732

Query: 164 ------TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
                 +YN ++  LC   Q+ +A  +  +M  KG++ +   + TLM   I++ +
Sbjct: 733 KGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQK 787



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T+N ++   C +G +  A      M+   ++P+VVTYN+L+   C      EA  L
Sbjct: 208 PNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTL 267

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G+     T+N ++    +   + +AT +++ M   G  PD +       Y  L
Sbjct: 268 LARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLW------TYNVL 321

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
             GLC+ GK+  A +L   +    ++ P+VVTYN  + A    ++   A +L  +M  KG
Sbjct: 322 AAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKG 381

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V  + V    ++    R+ +  + +  L+ M +  + P     + ++D   K
Sbjct: 382 VKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCK 433



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 9/235 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKEL--FLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +P+    N ++  L +         L  F  +    ++PN  T+N L+H  C      +A
Sbjct: 170 RPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADA 229

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                 M   GL  DVVT+N ++   C+   + EA  LL  M + G+ P          Y
Sbjct: 230 LSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTR------ATY 283

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME- 189
             L+    ++G +K A  + +++T  G  P++ TYN+    LC   ++D+A  L  +ME 
Sbjct: 284 NTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEH 343

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  V+P+ V + TL+ +  +   +S  + LL  M  + V       +I+V  L +
Sbjct: 344 LSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCR 398


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V++N+++ G C+ G + +A  LF ++K  ++ P V+TYN+LIHG C     + A  L
Sbjct: 353 PDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRL 412

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM D+GL  D+ T+ ++++   K   +  A    + M+  G++PD F      AY   
Sbjct: 413 KKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRF------AYNTR 466

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G  KI     A  + + +  AG  P+V+TYN+ +HALC     ++A DL  +M   G+
Sbjct: 467 IVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGL 526

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            P+ V +T+++  F++     K  E+   M  + V P     ++++
Sbjct: 527 IPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 76/287 (26%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYNT+I GLC  G++D A  L  +M D+ + P++ TY  L++G       + A   
Sbjct: 388 PTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGF 447

Query: 74  FIEMMDRGLQSD-----------------------------------VVTFNVIMDELCK 98
           F EM+ +GL+ D                                   V+T+NV +  LC+
Sbjct: 448 FNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ 507

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
               +EA  LL+ M+  G+ PD       V Y  +I+G  K G L+ ARE+   +   G+
Sbjct: 508 QGNFEEACDLLENMVSDGLIPDH------VTYTSIINGFVKNGHLRKAREVFNEMLSKGV 561

Query: 159 MPNVVTYNITIHA-----------------------------------LCNDEQMDKAHD 183
            P+VVTY + IHA                                   LC   +MD+A+ 
Sbjct: 562 APSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYK 621

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            F +ME KG+ PN   +T L+          + + L R M  R + P
Sbjct: 622 YFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQP 668



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 8/234 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG+  KP  VTYNT++D  CKEG VD+A EL  +M++    PN VTYN L++G     +
Sbjct: 208 QFGI--KPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGE 265

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A+ L  EM++ GL     T+N +++  C+     EA  L++ M+     P       
Sbjct: 266 LEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFP------T 319

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  L+ GLCK  ++   R     + ++   P++V++N  ++  C    + +A  LF 
Sbjct: 320 LSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFD 379

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +++ + + P  + + TL+            + L + M  + + P     +I+V+
Sbjct: 380 ELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVN 433



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 6/165 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY +II+G  K G + KA+E+F +M  + + P+VVTY  LIH        + A   
Sbjct: 528 PDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMY 587

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+++ + ++V+T+N I++ LC  R+MDEA +  D M + G+ P+ F      +Y  L
Sbjct: 588 FSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKF------SYTIL 641

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           I+  C +G  + A  L + +    + P+  T+++ +  L  D Q+
Sbjct: 642 INESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQV 686



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N I+  L  E  + KAK ++  M+   I P VVTYN+++  +C     ++A  L
Sbjct: 178 PDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALEL 237

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM +RG   + VT+NV+++ L K  ++++A  L++ M+  G+   A+       Y  L
Sbjct: 238 LSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY------TYNPL 291

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G C+ G    A +L + +      P + TYN  ++ LC   Q+      F DM     
Sbjct: 292 INGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKF 351

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+ V F +L+  + R    S+   L   +  R+++P
Sbjct: 352 TPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVP 388



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 113/263 (42%), Gaps = 29/263 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTYN +++GL K+G +++AK L  +M +  +N +  TYN LI+GFC      EA 
Sbjct: 246 CYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAF 305

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            L  EM++R     + T+N +M  LCK  ++         M++    PD          +
Sbjct: 306 DLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGY 365

Query: 123 CEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C                       ++ Y  LI GLC  G L  A  L + +T  GL P++
Sbjct: 366 CRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDI 425

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            TY I ++       +  A   F +M  KG+ P+   + T +   ++  +TS    +   
Sbjct: 426 FTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEE 485

Query: 223 MDKRNVMPYASILSIIVDLLVKN 245
           M      P     ++ V  L + 
Sbjct: 486 MLAAGFPPDVITYNVFVHALCQQ 508



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 6/203 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN  +  LC++G  ++A +L   M  + + P+ VTY S+I+GF       +A  +
Sbjct: 493 PDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREV 552

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM+ +G+   VVT+ V++      + +D A      M++  V        N++ Y  +
Sbjct: 553 FNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSV------PANVITYNAI 606

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLC   ++  A +    +   G++PN  +Y I I+  CN    ++A  L+ +M  + +
Sbjct: 607 INGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKI 666

Query: 194 APNCVIFTTLMPSFIRKNETSKV 216
            P+    +  + +  R  +   V
Sbjct: 667 QPDSFTHSVFLKNLHRDYQVHAV 689



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 6/193 (3%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97
           +F +M    + P+V   N ++      N  ++A+ ++  M   G++  VVT+N ++D  C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  ++D+A  LL  M + G  P      N V Y  L++GL K G+L+ A+ L + +  +G
Sbjct: 227 KEGRVDQALELLSEMQERGCYP------NDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L  +  TYN  I+  C      +A DL  +M  +   P    + TLM    +  + + V 
Sbjct: 281 LNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVR 340

Query: 218 ELLRSMDKRNVMP 230
                M K    P
Sbjct: 341 LRFSDMLKSKFTP 353



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M+  GL  DV   N I+  L     + +A  +  +M Q G++P       +V Y  
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKP------TVVTYNT 220

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D  CK G++  A EL   +   G  PN VTYN+ ++ L    ++++A  L  +M   G
Sbjct: 221 MLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  +   +  L+  F +K    +  +L+  M  R   P  S  + ++  L K
Sbjct: 281 LNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCK 332


>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
 gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
          Length = 647

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 13/247 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R F  + KP+  +YNT+IDGLC+ G + +A++LF +M      P VVTY +LIH      
Sbjct: 295 RVFRNIPKPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREA 354

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++A  LF EM  RG+  +VVT++ ++D LCK  +   A  LLD M++    P      
Sbjct: 355 CFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLP------ 408

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N + Y  +IDGLCK G L  A E+   +   G  P+   +   I  LC+  +  +A +  
Sbjct: 409 NTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYL 468

Query: 186 LDMEVKGVAPNCVIFT-------TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            +M   G+ PN + ++        ++ +   K E  +  ++ +SM  R +    +   ++
Sbjct: 469 DEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLL 528

Query: 239 VDLLVKN 245
           V+ L K 
Sbjct: 529 VECLSKK 535



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 7/207 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+++IDGLCK G    A EL  +M  E   PN +TY+S+I G C      +A  +
Sbjct: 373 PNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEI 432

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG-- 131
              M  +G + D   F  ++  LC   +  EA+  LD M   G+RP+    +    +G  
Sbjct: 433 LDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPN---RLTWSLHGRI 489

Query: 132 --CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
              ++  LC  G++  A ++ QS+   G+     T+++ +  L     ++KA  +  DM 
Sbjct: 490 NDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDML 549

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKV 216
            +   P    + T++ ++  K +   V
Sbjct: 550 SERCIPERETWDTIVRAYWSKKKLRAV 576



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 13/205 (6%)

Query: 56  SLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           SL+  +  A+    A +LF       GL     ++  ++  L  +  +  A  LL  M  
Sbjct: 206 SLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRA 265

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLK--NARELSQSLTRAGLMPNVVTYNITIHAL 172
            G  P          Y  L+   C    +   +A  + +++ +    P+  +YN  I  L
Sbjct: 266 AGFAP------TTATYNVLVKAHCSDAAVPIDDAVRVFRNIPK----PDACSYNTVIDGL 315

Query: 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           C   ++ +A DLF +M   G AP  V +TTL+    R+      ++L   M +R +MP  
Sbjct: 316 CRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNV 375

Query: 233 SILSIIVDLLVKNEISLNSIPQFNR 257
              S ++D L K   + +++   +R
Sbjct: 376 VTYSSLIDGLCKGGRAASAVELLDR 400


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+I G CK G VD A E++  M  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 245 PNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D  T+  ++D  CK   +D A +    MIQG +R D       VAY  L
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDD------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P++ TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 418

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 419 VPSVVTYNVLM 429



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LI G C
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIP------NGVTFTTLIXGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AH L  +M +KG+ P+  
Sbjct: 259 KNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKF 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     +  + M + N+    + Y +++S
Sbjct: 319 TYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALIS 360



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD F       Y  
Sbjct: 269 IYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKF------TYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A +  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 323 LIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 383 LKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVP 420



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++   CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A  L   ++  GL P+  TY   I   C +  +D A      M    
Sbjct: 288 LIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKK 400



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 90/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 243 LIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLP 280



 Score = 43.5 bits (101), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 12/204 (5%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRK-MDEATRLLD 110
           +Y ++IH  C     +EA+ L   ++ R G  S    F  I++     R  +   + L+ 
Sbjct: 21  SYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFATILETKGTQRSDIYVFSGLIT 80

Query: 111 LMIQGGVRPDAF-C-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMP 160
             ++ G   DA  C       ++ +    C  +++ L K+   K      + +   G   
Sbjct: 81  AYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPA 140

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++  +NI +H  C D  +  A  +F  +   G+ P+ V + TLM  +IR  +  +   L 
Sbjct: 141 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 200

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
            +M    V P     S++++ L K
Sbjct: 201 SAMLASGVQPDVYTYSVLINGLCK 224



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+     P+VVTYN L++G
Sbjct: 384 KPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 102/191 (53%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V ++  I+GL   G VD+A ++FLQM  +   PN   YNSLI GFC +    EA  L
Sbjct: 462 PDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALML 521

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL  D+ T N+I++ LCK  +M  A+ +   M   G+ PD      IV Y  L
Sbjct: 522 EREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPD------IVTYNTL 575

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK     +  E+   +   G  P++ TYNI +H LC   +M +A  +  ++   GV
Sbjct: 576 IDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGV 635

Query: 194 APNCVIFTTLM 204
            P+ V + T+M
Sbjct: 636 VPDTVTYNTVM 646



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 41/266 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+ T+I+  C +G + +A+ LF  MK+    PNVV YN+L++G+  A D  +A 
Sbjct: 215 CTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQAN 274

Query: 72  YLFIEMMDRGLQSDVVTFNVI-----------------------------------MDEL 96
            L+ EM  + +  D  TFN++                                   +  L
Sbjct: 275 MLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGL 334

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C    +DEA + L+ M++ G+ P       +VA+  +I    + G  + A +  + + + 
Sbjct: 335 CWAGWLDEAMKFLEDMLEKGITP------TVVAFNSIIAAYSRAGLEEKAYKAYRMMVKF 388

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P+ +T +  I  L    ++ +A DL  +M V+G+  N   FT L+  + R  + +  
Sbjct: 389 GLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGA 448

Query: 217 IELLRSMDKRNVMPYASILSIIVDLL 242
             L   M+ R + P A   S  ++ L
Sbjct: 449 YSLWNEMEGRGIHPDAVAFSAFINGL 474



 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 112/217 (51%), Gaps = 8/217 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FG+   P+++T +++I GL K   + +A++L  +M  E +  N   +  L+ G+    D
Sbjct: 387 KFGLF--PSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGD 444

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              A  L+ EM  RG+  D V F+  ++ L     +DEA  +   M + G  P+ F    
Sbjct: 445 VAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNF---- 500

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y  LI G C  G+L+ A  L + + R GL+P++ T NI I+ LC + +M  A D+F 
Sbjct: 501 --VYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFR 558

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +M   G+ P+ V + TL+  + +  +T    E++  M
Sbjct: 559 NMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKM 595



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T N II+GLCKEG +  A ++F  M    + P++VTYN+LI G+C A D    + +
Sbjct: 532 PDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEV 591

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G   D+ T+N+ +  LC  RKM  A  +L+ +I  GV PD       V Y  +
Sbjct: 592 VNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDT------VTYNTV 645

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           ++G+C    L+ A  ++  L +   +PNVVT N+ +   C     +K
Sbjct: 646 MNGVCT-DVLERAMIVTAKLLKMAFVPNVVTANLLLSHFCKQGMPEK 691



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           YN  + GLC  G++D+A +    M ++ I P VV +NS+I  +  A    +A   +  M+
Sbjct: 327 YNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMV 386

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             GL    +T + ++  L K  ++ EA  LL  MI  G+       IN  A+  L+DG  
Sbjct: 387 KFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGL------PINKAAFTLLLDGYF 440

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           ++G +  A  L   +   G+ P+ V ++  I+ L     +D+A+D+FL M  KG  PN  
Sbjct: 441 RMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNF 500

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++ +L+  F       + + L R M ++ ++P     +II++ L K
Sbjct: 501 VYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCK 546



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 105/216 (48%), Gaps = 6/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   +  ++DG  + G V  A  L+ +M+   I+P+ V +++ I+G       +EA  +F
Sbjct: 428 NKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVF 487

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           ++M  +G   +   +N ++   C + ++ EA  L   M + G+ PD F   NI+     I
Sbjct: 488 LQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIF-TTNII-----I 541

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK G++K+A ++ +++   GL+P++VTYN  I   C         ++   M   G  
Sbjct: 542 NGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWD 601

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           P+   +   +       + S+ + +L  +    V+P
Sbjct: 602 PDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVP 637



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+   YN +I+  C  G    A      M D    P++VT+ ++I+ FC   +  EA 
Sbjct: 180 CQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEAR 239

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF  M + G   +VV +N +M+   K R + +A  L + M    V PD         + 
Sbjct: 240 NLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDC------TTFN 293

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G  + G+ ++   L + L+++G +     YNI +  LC    +D+A     DM  K
Sbjct: 294 ILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEK 353

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P  V F +++ ++ R     K  +  R M K  + P +   S ++  L K
Sbjct: 354 GITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSK 406



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 10/229 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V +N+II    + G  +KA + +  M    + P+ +T +SLI G        EA  L
Sbjct: 357 PTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDL 416

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  GL  +   F +++D   +   +  A  L + M   G+ PDA      VA+   
Sbjct: 417 LYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDA------VAFSAF 470

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GL  +G +  A ++   +++ G MPN   YN  I   CN  ++ +A  L  +M  KG+
Sbjct: 471 INGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGL 530

Query: 194 APNCVIFTT--LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+  IFTT  ++    ++       ++ R+M    ++P     + ++D
Sbjct: 531 LPD--IFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLID 577



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 8/216 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+  +P++     +   L + G      +L   M  +   P    +N++I GFC   
Sbjct: 106 REVGL--RPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKG 163

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
                E L   M     Q DV  +N++++  C   +  +A   +  MI  G  P      
Sbjct: 164 HVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTP------ 217

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           ++V +G +I+  C  G +  AR L   +  AG +PNVV YN  ++       + +A+ L+
Sbjct: 218 SLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLY 277

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
            +M+ K VAP+C  F  L+    R         LLR
Sbjct: 278 EEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLR 313



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           +T++ G  K     +A E+  +M++  + P+      L        D      L   M+ 
Sbjct: 83  DTLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIH 142

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
           +G +     FN ++   C+   +     LL +M +   +PD +      AY  LI+  C 
Sbjct: 143 QGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVY------AYNILINAYCT 196

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G+  +A    + +   G  P++VT+   I+A CN   M +A +LF  M+  G  PN V 
Sbjct: 197 RGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVC 256

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + TLM  +++  +  +   L   M  + V P  +  +I+V
Sbjct: 257 YNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILV 296



 Score = 44.3 bits (103), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+ +     P+  TYN  + GLC    + +A  +  ++    + P+ VTYN++++G C  
Sbjct: 593 NKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNGVC-T 651

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           +    A  +  +++      +VVT N+++   CK + M E T
Sbjct: 652 DVLERAMIVTAKLLKMAFVPNVVTANLLLSHFCK-QGMPEKT 692


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 121/212 (57%), Gaps = 6/212 (2%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
             PN VTYNT+I+G  KEG +  A ++F +M   +++PN VTYN+LI G C+  D  EA  
Sbjct: 1086 SPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALR 1145

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            L   M   GL+ + VT+  +++ LCK+ K + A RLL+ M     R +    +  +AY  
Sbjct: 1146 LLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERM-----RVNDMV-VGHIAYTV 1199

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            LIDGLCK G L  A +L  ++ + G+ P+V+TY+  I+  C    +  A ++   M   G
Sbjct: 1200 LIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 1259

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
            +  N +I++TL+ +F +    ++ +++   M+
Sbjct: 1260 LVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMN 1291



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            PN  T+N +I+GLC EG + KA  L  QM++    P +VTYN+L++ +C       A  L
Sbjct: 982  PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIEL 1041

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
               M+ +G+++DV T+NV +D LC N +  +A  LL  M +  + P      N V Y  L
Sbjct: 1042 IDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISP------NEVTYNTL 1095

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            I+G  K GK+  A ++   +++  L PN VTYN  I   C+    ++A  L   ME  G+
Sbjct: 1096 INGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGL 1155

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
              N V + TL+    +  +      LL  M   +++      ++++D L KN
Sbjct: 1156 RLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKN 1207



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 9/233 (3%)

Query: 10   VVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            ++CK    +  TYN  ID LC      KA  L  +M+ E I+PN VTYN+LI+GF     
Sbjct: 1045 MICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGK 1104

Query: 67   GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
               A  +F EM    L  + VT+N ++   C     +EA RLLD M   G+R      +N
Sbjct: 1105 IGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLR------LN 1158

Query: 127  IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             V YG L++GLCK  K + A+ L + +    ++   + Y + I  LC +  +D+A  L  
Sbjct: 1159 EVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVG 1218

Query: 187  DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +M   GV P+ + +++L+  F R        E++  M +  ++    I S ++
Sbjct: 1219 NMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLI 1271



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 30/247 (12%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            PN++TY+ II+G    G    A   F  M     +P+  TY SL+ G C   +  EA+  
Sbjct: 1332 PNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKF 1391

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
               +       D V +N ++ E CK+  + EA  L D M+Q  V PD++           
Sbjct: 1392 LNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCR 1451

Query: 123  --------CEI-----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                    C             N V Y CL+DGL K G  K A    + + + G  P+ V
Sbjct: 1452 KGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTV 1511

Query: 164  TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             +N  I +     QM KA+D F  M   GV PN   +  L+  F +K    + + L  +M
Sbjct: 1512 AFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTM 1571

Query: 224  DKRNVMP 230
             +  + P
Sbjct: 1572 MREGIFP 1578



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 10/227 (4%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            KP+  T N I+  + K+   +    LF +M D+ I PNV T+N LI+G C   +  +A  
Sbjct: 946  KPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGN 1005

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            L  +M + G    +VT+N +++  CK  +   A  L+D MI  G+  D      +  Y  
Sbjct: 1006 LLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEAD------VCTYNV 1059

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
             ID LC   +   A  L + + +  + PN VTYN  I+    + ++  A  +F +M    
Sbjct: 1060 FIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFD 1119

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
            ++PNCV +  L+       +  + + LL  M+    + N + Y ++L
Sbjct: 1120 LSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLL 1166



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+ +TY+++I+G C+ G +  AKE+  +M    +  N + Y++LI+ FC   +  EA  +
Sbjct: 1227 PDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKV 1286

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +  M   G  +D  T NV++  LC++ K+ EA + L  M + G+ P      N + Y C+
Sbjct: 1287 YAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVP------NSITYDCI 1340

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            I+G   IG   NA      + + G  P+  TY   +  LC    + +A      +     
Sbjct: 1341 INGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPG 1400

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
            A + V++ TL+    +     + + L   M + NV+P    Y+S+L+
Sbjct: 1401 AVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLT 1447



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 6/220 (2%)

Query: 11   VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
            +C      ++ +I    KEG +D A E F  +      P+V T N ++            
Sbjct: 909  LCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELV 968

Query: 71   EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
              LF EM D+G+  +V TFN++++ LC    + +A  LL  M + G  P       IV Y
Sbjct: 969  WSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVP------TIVTY 1022

Query: 131  GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
              L++  CK G+ K A EL   +   G+  +V TYN+ I  LC + +  KA+ L   M  
Sbjct: 1023 NTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRK 1082

Query: 191  KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            + ++PN V + TL+  F+++ +     ++   M K ++ P
Sbjct: 1083 EMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSP 1122



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 15   NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            ++V YNT++   CK G + +A  LF +M   N+ P+  TY+SL+ G C       A  LF
Sbjct: 1403 DSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLF 1462

Query: 75   IEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
               M RG L  + V +  ++D L K      A    + M++ G  PD       VA+  +
Sbjct: 1463 GTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDT------VAFNAI 1516

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            ID   + G++  A +   ++   G+ PN+ TYNI +H     + + +   L+  M  +G+
Sbjct: 1517 IDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGI 1576

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             P+ + F +L+    +       ++LL  M
Sbjct: 1577 FPDKLTFHSLILGLSKSGIPDLGVKLLGKM 1606



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 128/299 (42%), Gaps = 66/299 (22%)

Query: 6    REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
            R +GV   PN  TYN ++ G  K+  + +   L+  M  E I P+ +T++SLI G   + 
Sbjct: 1537 RWWGVC--PNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSG 1594

Query: 66   DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD----- 120
              +    L  +M+  G  +D  TFN+++++  ++ KM +A  L++ M   GV PD     
Sbjct: 1595 IPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYN 1654

Query: 121  ----------AFCEINIV--------------AYGCLIDGLCKIGKLKNA---------- 146
                      AF E  +V               Y  LI+G+C++G ++ A          
Sbjct: 1655 HIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEAL 1714

Query: 147  ----RELSQS---------------------LTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                 E+++S                     + R  L+P + T+   +H  C D ++ +A
Sbjct: 1715 GFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEA 1774

Query: 182  HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              L   ME+ G+  + V +  L+       +++   EL   M  R++ P  +  +++VD
Sbjct: 1775 LKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVD 1833



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 8/187 (4%)

Query: 7    EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            E GV+  P    Y T+I+G+C+ G +  A +L  +M+      + V  ++++ G  +   
Sbjct: 1678 ENGVI--PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGK 1735

Query: 67   GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              +A  +   M+   L   + TF  +M   C++ K+ EA +L  +M   G++ D      
Sbjct: 1736 TEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLD------ 1789

Query: 127  IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
            +VAY  LI G+C  G    A EL + +    L PN+ TY + + A+     + +   L  
Sbjct: 1790 VVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLT 1849

Query: 187  DMEVKGV 193
            D++ +G+
Sbjct: 1850 DLQERGL 1856



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 6/219 (2%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P+  TYN I +GL K+    ++  +  +M +  + P    Y +LI+G C   D   A  L
Sbjct: 1648 PDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKL 1707

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              EM   G  S  V  + ++  L    K ++A  +LD M++  + P       I  +  L
Sbjct: 1708 KDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLP------TIATFTTL 1761

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            +   C+  K+  A +L   +   GL  +VV YN+ I  +C +     A +L+ +M  + +
Sbjct: 1762 MHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDL 1821

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
             PN   +  L+ +    N   +  +LL  + +R ++ + 
Sbjct: 1822 CPNITTYAVLVDAISAANNLIQGEKLLTDLQERGLISWG 1860



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 7/226 (3%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            PN V Y  ++DGL K G    A   F +M  +   P+ V +N++I          +A   
Sbjct: 1473 PNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDF 1532

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            F  M   G+  ++ T+N+++    K + +     L   M++ G+ PD       + +  L
Sbjct: 1533 FSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDK------LTFHSL 1586

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            I GL K G      +L   +   G + +  T+NI I+      +M KA DL   M   GV
Sbjct: 1587 ILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGV 1646

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSII 238
             P+   +  +     +K+   +   +L  M +  V+P +A  +++I
Sbjct: 1647 FPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLI 1692



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 89   FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
            F++++    K   +D A    +L+   G +P  +    I+A       + K  + +    
Sbjct: 917  FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILA------SMVKDKRTELVWS 970

Query: 149  LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
            L + ++  G+ PNV T+NI I+ LC +  + KA +L   ME  G  P  V + TL+  + 
Sbjct: 971  LFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYC 1030

Query: 209  RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
            +K      IEL+  M  + +       ++ +D L  N  S
Sbjct: 1031 KKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRS 1070



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            K + V YN +I G+C  G    A EL+ +M+  ++ PN+ TY  L+     AN+  + E 
Sbjct: 1787 KLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEK 1846

Query: 73   LFIEMMDRGLQS 84
            L  ++ +RGL S
Sbjct: 1847 LLTDLQERGLIS 1858


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 10/224 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK G +  A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILSII 238
            +TTL+    ++ +     E  + M K N+    + Y +++S +
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXL 356



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412

Query: 194 APNCV 198
            PN V
Sbjct: 413 LPNVV 417



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A  LF +M D  + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 263 IYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P    +T ++  F +K +     +LL+ M +   +P
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLP 414



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +D+   L   M+   + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANA 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   K+        T   +I              
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWG 122

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M   CK  ++  A  + D + + G+RP      ++V++  
Sbjct: 123 FYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  KIG L     L   +  +G+ P+V TY++ I+ LC + +MD A+ LF +M   G
Sbjct: 177 LMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ R M  ++++P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLP 274



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 62/108 (57%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+IDG CKEG ++ A E   +M  ENI  + V Y +LI   C      +AE 
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEK 367

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +  EM+  GL+ ++ T+ +I++E CK   +   ++LL  M + G  P+
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPN 415



 Score = 41.6 bits (96), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I  LC+EG    A+++  +M    + P + TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G   +VVT
Sbjct: 407 MQRDGYLPNVVT 418



 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 48/112 (42%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+ L K+   K      +     G   ++  +NI +H  C   ++  A  +F  +   G
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +I+  +  +   L   M    V P     S++++ L K
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCK 218


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYN II G C  G  D A  +   MK     P+  +Y  LI GFC  +    A  +
Sbjct: 468 PTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGM 527

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EMMDRGL  + VT+  ++   CK+ K+D A R+L+ M + G RP      N+  Y  L
Sbjct: 528 FNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRP------NVQTYNVL 581

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL K      A EL + +    + P+VVTY+  I+ LCN+  +  A ++F  M   G 
Sbjct: 582 IHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGC 641

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN   +++L+ +  ++    +  E+   + K+ ++P
Sbjct: 642 LPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIP 678



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 120/249 (48%), Gaps = 8/249 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GVV  PNTVTYN +++ L +   +D A  +F  M      PN  +YN LI G+C   D  
Sbjct: 395 GVV--PNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTE 452

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A  +   M+       +VT+N+I+   C +   D A R+L+LM   G +PD +      
Sbjct: 453 KAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEW------ 506

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  LI G CKI K++ A  +   +   GL PN VTY   I   C DE++D A  +   M
Sbjct: 507 SYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERM 566

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
           +  G  PN   +  L+    ++N  S   EL + M +  + P     S +++ L  N   
Sbjct: 567 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAI 626

Query: 249 LNSIPQFNR 257
             ++  FN+
Sbjct: 627 PLALEMFNK 635



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TY T++  L K        + + Q+  E + PN++ YNS+I+  C   +  +AE +  ++
Sbjct: 195 TYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV 254

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
              G++ D  T+  ++   C+NR +D A  + + M + G      CE N   Y  LI+GL
Sbjct: 255 FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEG------CEPNAATYSTLINGL 308

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           C  G++  A +    +TR G++P V T+   I ALC+  +++ A  +F+DM+ KG  PN 
Sbjct: 309 CNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNV 368

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             +T+L+     +  +   I L   M +  V+P     + ++++L++N
Sbjct: 369 YTYTSLISG---QRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMEN 413



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PNT +YN +I G C  G  +KA  +   M      P +VTYN +I G+C + D + A 
Sbjct: 431 CLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAI 490

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M   G Q D  ++  ++   CK  KM+ A+ + + M+  G+ P      N V Y 
Sbjct: 491 RVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCP------NEVTYT 544

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G CK  KL  A  + + + R+G  PNV TYN+ IH L        A +L   M  +
Sbjct: 545 ALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEE 604

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            ++P+ V ++T++            +E+   M K   +P     S ++  L
Sbjct: 605 KISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQAL 655



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 9/235 (3%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+ F    KP+T TY ++I G C+   +D A E+F +M +E   PN  TY++LI+G C +
Sbjct: 252 NKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNS 311

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              NEA     EM   G+   V TF   +  LC   ++++A ++   M + G +P     
Sbjct: 312 GRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKP----- 366

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N+  Y  LI G  ++ ++  A  L   ++R G++PN VTYN  ++ L  + ++D A  +
Sbjct: 367 -NVYTYTSLISGQ-RVSRM--AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIV 422

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           F  M   G  PN   +  L+  +    +T K + +L +M K    P     +II+
Sbjct: 423 FNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIII 477



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 112/222 (50%), Gaps = 11/222 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN + YN++I+ LCK+G V  A+ +  ++    + P+  TY S+I G+C   D + A  
Sbjct: 225 QPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFE 284

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M + G + +  T++ +++ LC + +++EA   +  M + GV P       +  +  
Sbjct: 285 IFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLP------TVHTFTA 338

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK-AHDLFLDMEVK 191
            I  LC +G++++A ++   + + G  PNV TY     +L + +++ + A  LF  M   
Sbjct: 339 PIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYT----SLISGQRVSRMAIGLFHRMSRD 394

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
           GV PN V +  LM   +   E    + +   M K   +P  S
Sbjct: 395 GVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTS 436



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 31/237 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+T+I+GLC  G +  A E+F +M      PN+ TY+SLI          EAE +
Sbjct: 608 PDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEM 667

Query: 74  FIEMMDRGLQSDVVTFNVIMDELC-KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F E+  +GL  D VT+ V M E+C  + K+D A   L  MI  G      C+  +  Y  
Sbjct: 668 FSELKKQGLIPDEVTY-VKMIEVCVMSGKVDRAFDFLGEMINAG------CQPTLQTYDV 720

Query: 133 LIDGL------CKIGKLKNARE----------------LSQSLTRAGLMPNVVTYNITIH 170
           LI GL       K+  L NA                  LS  L       +   Y+  + 
Sbjct: 721 LIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLS 780

Query: 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM-DKR 226
            L    +  +A++L+  M  +   PN   +   + S +R  +    +++ + M D+R
Sbjct: 781 RLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQR 837



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY+++I  L +EG V++A+E+F ++K + + P+ VTY  +I     +   + A 
Sbjct: 641 CLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAF 700

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA-- 129
               EM++ G Q  + T++V++  L +N  +      L          D     ++++  
Sbjct: 701 DFLGEMINAGCQPTLQTYDVLIKGL-QNEMVYHKLVALPNAASTSTFDDQIINKDVISVL 759

Query: 130 ---------------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
                          Y  L+  L + G+   A  L +S+      PN  TY   + +L  
Sbjct: 760 SSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLR 819

Query: 175 DEQMDKAHDLFLDM 188
             ++D A D+F  M
Sbjct: 820 ALKVDLAMDVFKHM 833



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 46/99 (46%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY   +  L +   VD A ++F  M D+    ++  Y  LI   C  +   EA ++
Sbjct: 805 PNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFV 864

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
           F +M+ R L +D + + ++++ L      D     L +M
Sbjct: 865 FEKMLSRALNADEIVWTILINGLLGAGYKDLCMEFLHIM 903



 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 28/214 (13%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKEL-----FLQMKDENINPNVVT------------- 53
           C+P   TY+ +I GL  E    K   L          D+ IN +V++             
Sbjct: 711 CQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFEL 770

Query: 54  ----YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
               Y++L+     +    EA  L+  M+ +    +  T+   +  L +  K+D A  + 
Sbjct: 771 SRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVF 830

Query: 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
             M       D  CE+++  Y  LI  LC++ + K AR + + +    L  + + + I I
Sbjct: 831 KHM------SDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILI 884

Query: 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
           + L      D   +    ME     P+    T L
Sbjct: 885 NGLLGAGYKDLCMEFLHIMETNRRNPSSHARTIL 918


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVIFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + + H L  +M +KG+ P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKI 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALIS 360



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 104/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +  +L
Sbjct: 245 PNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDE------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 419 VPSVVTYNVLM 429



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN V + +LI G C     + A  
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +   L+D M   G++PD       + Y  
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDK------ITYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + V F  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK    L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P A   ++I++   K 
Sbjct: 348 IRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKK 400



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN VIFTTL+    +       +E+ + M  ++++P
Sbjct: 243 LVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 280



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 6/124 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+IDG CKEG +D A E   QM  ENI  + V Y +LI G C      +AE 
Sbjct: 314 KPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEK 373

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM++ GL+ D  T+ +I++E CK   + + ++LL  M + G  P      ++V Y  
Sbjct: 374 MLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP------SVVTYNV 427

Query: 133 LIDG 136
           L++G
Sbjct: 428 LMNG 431



 Score = 43.5 bits (101), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 172

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCK 224


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           + GVV  PN   YN++I+ LCK G +++A+ LF  M +  +NPN VTY  LI GF     
Sbjct: 358 KLGVV--PNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAK 415

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + A Y F +M++ G+ + V ++N +++  CK  KM  A  L   M+  G++P       
Sbjct: 416 LDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKP------T 469

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y  LI G CK G +  A +L   +T  G+ PN VT+   I  LC   +M +A  LF 
Sbjct: 470 VATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFD 529

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +M    + PN V +  L+    R+  T++  ELL  M K+ + P
Sbjct: 530 EMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSP 573



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 124/262 (47%), Gaps = 32/262 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TY ++I G CK+G V KA +L+ +M  + I PN VT+ +LI G C  N   EA  
Sbjct: 467 KPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASK 526

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA--- 129
           LF EM++  +  + VT+NV+++  C+      A  LLD MI+ G+ PD +    ++A   
Sbjct: 527 LFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLC 586

Query: 130 --------------------------YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                     Y  L+ G CK G++K A    Q +   GL  ++V
Sbjct: 587 STGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLV 646

Query: 164 TYNITIHALCNDEQMDKA-HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           +Y + I    N  Q D+   +L  +M  KG+ P+ VI+T L+  FI+     K  E    
Sbjct: 647 SYAVLISGALN--QNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYI 704

Query: 223 MDKRNVMPYASILSIIVDLLVK 244
           M     +P +   + +V+ L K
Sbjct: 705 MIGEGYVPNSVTYTALVNGLFK 726



 Score =  123 bits (308), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 8/234 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G V  P+    + +I+GL K G ++ A EL  ++    + PN+  YNS+I+  C    
Sbjct: 323 ELGYV--PSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGK 380

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EAE LF  M +RGL  + VT+ +++D   +  K+D A    + MI+ G+    +    
Sbjct: 381 LEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVY---- 436

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
             +Y  +I+  CK GK+K A  L + +   GL P V TY   I   C D  + KA  L+ 
Sbjct: 437 --SYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYH 494

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +M  KG+APN V FT L+    + N+ ++  +L   M +  ++P     +++++
Sbjct: 495 EMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIE 548



 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 8/237 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y  +IDG  K G + KA E +  M  E   PN VTY +L++G   A   NEA+ 
Sbjct: 676 QPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKL 735

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF  M+      + +T+   +D L K   M+ A +L + M+QG          N V Y  
Sbjct: 736 LFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSF-------ANTVTYNI 788

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C+IGK + A +L   +   G++P+ +TY+  I+  C    +D A D++  M  +G
Sbjct: 789 LIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRG 848

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEIS 248
           + P+ V+F  L+ +     E  + ++L   M  R + P  S   S++V L  +  ++
Sbjct: 849 LKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLT 905



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 109/204 (53%), Gaps = 9/204 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+VTY  +++GL K G+V++AK LF +M      PN +TY   +       +GN    L
Sbjct: 712 PNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHL--TKEGNMENAL 769

Query: 74  FIE-MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +   M +G  ++ VT+N+++   C+  K  EA +LLD+MI  G+ PD       + Y  
Sbjct: 770 QLHNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDC------ITYST 823

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I   CK G +  A ++ + + + GL P+ V +N  IHA C + ++D+A  L  DM ++G
Sbjct: 824 FIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRG 883

Query: 193 VAPNCVIFTTLMPSFIRKNETSKV 216
           + P    + +LM    ++   ++V
Sbjct: 884 LKPTQSTYHSLMVQLAQRARLTQV 907



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 110/198 (55%), Gaps = 6/198 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   Y  ++  LC+    +KAKE+  Q +    + ++VTYN  I+G C +    EA  
Sbjct: 222 KPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVE 281

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   + ++GL++D+VT+  ++  LC+ ++ +    ++D MI+ G  P         A   
Sbjct: 282 VKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSE------AAVSG 335

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+GL K+G ++ A EL   + + G++PN+  YN  I++LC   ++++A  LF  M  +G
Sbjct: 336 LIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERG 395

Query: 193 VAPNCVIFTTLMPSFIRK 210
           + PN V +T L+  F R+
Sbjct: 396 LNPNDVTYTILIDGFGRR 413



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 10/224 (4%)

Query: 17  VTYNTIIDGLCKEGFVDKAK-ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           V+Y  +I G   +   D+   EL  +M  + + P+ V Y  LI GF  + +  +A   + 
Sbjct: 646 VSYAVLISGALNQN--DRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWY 703

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
            M+  G   + VT+  +++ L K   ++EA  L   M+ G   P      N + YGC +D
Sbjct: 704 IMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIP------NHITYGCFLD 757

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
            L K G ++NA +L  ++ + G   N VTYNI I   C   +  +A  L   M   G+ P
Sbjct: 758 HLTKEGNMENALQLHNAMLQ-GSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVP 816

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +C+ ++T +  + ++      +++   M +R + P   + + ++
Sbjct: 817 DCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLI 860



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 29/197 (14%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-------------- 122
           M D GL  +V T + +++ L + RK  +   L D ++  GV+PD +              
Sbjct: 181 MRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKD 240

Query: 123 ---------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
                          C ++IV Y   I+GLCK  ++  A E+ +SL   GL  ++VTY  
Sbjct: 241 FNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCT 300

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            +  LC  ++ +   ++  +M   G  P+    + L+   I+        ELL  + K  
Sbjct: 301 LVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLG 360

Query: 228 VMPYASILSIIVDLLVK 244
           V+P   + + +++ L K
Sbjct: 361 VVPNLFVYNSMINSLCK 377



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+   P+ +TY+T I   CK G VD A +++  M    + P+ V +N LIH  C   + +
Sbjct: 811 GIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELD 870

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104
            A  L  +MM RGL+    T++ +M +L +  ++ +
Sbjct: 871 RALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQ 906


>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
          Length = 461

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY++II  LCK   +DKA E+   M    + PN  TYNS++HG+C +    EA   
Sbjct: 225 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGF 284

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G++ DVVT N++MD LCKNR+  EA ++ + M + G++PD      I  Y  L
Sbjct: 285 LKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPD------ITTYCTL 338

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G L    +L   +   G+ PN   +NI I A    E++D+A  +F  M  +G+
Sbjct: 339 LQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGL 398

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +PN V + T++    +       +  L+ M    + P
Sbjct: 399 SPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTP 435



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V YNT+I+G  KEG  DKA   + +M D+ I P+VVTY+S+I   C A   ++A 
Sbjct: 188 CPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAM 247

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M+  G+  +  T+N I+   C + ++ EA   L +M   GV PD      +V   
Sbjct: 248 EVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPD------VVTCN 301

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+D LCK  +   AR++  S+T+ GL P++ TY   +        + + HDL   M   
Sbjct: 302 LLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWN 361

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ PN  +F  L+ ++ ++ +  + + +   M ++ + P A     ++D+L K
Sbjct: 362 GIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCK 414



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNE 69
           C PN  +   ++ GLC E    +A EL   M D+  +  P+VV YN++I+GF    D ++
Sbjct: 151 CIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDK 210

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   + EM D+G+  DVVT++ I+  LCK + MD+A  +L+ M++ GV P      N   
Sbjct: 211 AYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP------NCRT 264

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++ G C  G+L  A    + +   G+ P+VVT N+ +  LC + +  +A  +F  M 
Sbjct: 265 YNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMT 324

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             G+ P+   + TL+  +  K    ++ +LL  M    + P   + +I++    K E
Sbjct: 325 KCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQE 381



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 5/244 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-EY 72
           PN  TY+ +I   C+ G +D        +  +      +T+  L+ G C     ++A + 
Sbjct: 82  PNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI 141

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M   G   +V +  +++  LC   +  EA  LL +M   G      C  ++V Y  
Sbjct: 142 VLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDG----GDCPPDVVLYNT 197

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G  K G    A      +   G++P+VVTY+  I ALC  + MDKA ++   M   G
Sbjct: 198 VINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 257

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           V PNC  + +++  +    + ++ I  L+ M    V P     ++++D L KN     + 
Sbjct: 258 VMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEAR 317

Query: 253 PQFN 256
             FN
Sbjct: 318 KIFN 321



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY T++ G   +G + +  +L   M    I PN   +N LI  +      +EA  
Sbjct: 329 KPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAML 388

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M  +GL  + V +  ++D LCK  ++ +A   L  MI  G+ PD      I+ Y  
Sbjct: 389 VFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPD------IIVYTP 442

Query: 133 LIDGLCKIGKLKNAREL 149
           LI G C   K + A EL
Sbjct: 443 LIHGFCTCDKWEKAEEL 459



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 50/97 (51%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN   +N +I    K+  VD+A  +F +M+ + ++PN V Y ++I   C      +A  
Sbjct: 364 QPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVL 423

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
              +M++ GL  D++ +  ++   C   K ++A  L+
Sbjct: 424 TLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELI 460


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ +M  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 242 PNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 301

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D  T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 302 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYAAL 355

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 356 ISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGH 415

Query: 194 APNCVIFTTLM 204
           AP+ V +  LM
Sbjct: 416 APSVVTYNVLM 426



 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+      +E   L   M+
Sbjct: 142 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAML 201

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+  DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 202 ASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIP------NGVTFTTLIDGHC 255

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AHDL  +M +KG+ P+  
Sbjct: 256 KNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 315

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + YA+++S
Sbjct: 316 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALIS 357



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  +
Sbjct: 207 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEI 266

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD F       Y  L
Sbjct: 267 YKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF------TYTTL 320

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G+
Sbjct: 321 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGL 380

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+   +T ++  F +K +  K  +LL+ M +    P
Sbjct: 381 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAP 417



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 171 RPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANE 230

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 231 LFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPD------LITYNT 284

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+  TY   I   C +  +D A +    M  + 
Sbjct: 285 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQEN 344

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +  L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 345 IRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 397



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 126 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 179

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G++P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 180 LMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 239

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 240 LIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLP 277



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 6/124 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY T+IDG CKEG +D A E   +M  ENI  + V Y +LI G C      +AE 
Sbjct: 311 KPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEK 370

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM+  GL+ D  T+ +I++E CK   + + ++LL  M + G  P      ++V Y  
Sbjct: 371 MLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAP------SVVTYNV 424

Query: 133 LIDG 136
           L++G
Sbjct: 425 LMNG 428



 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 110 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 169

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR     +   L  +M    V+P     S++++ L K
Sbjct: 170 LRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCK 221


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VT+  +I+G CK      A  +F +MK + I  +VVTYNSLI G C      E   L
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM D GL  + +TF  ++   CK   M +A   +D M +  V PD      +V Y  L
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPD------VVIYTIL 375

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  ++GK+++A  + +++ + G+ PNV TYN  I           A  L  +M+ KG+
Sbjct: 376 IDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGI 435

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             + V +  L+ +   K E  K ++LL  M +  + P
Sbjct: 436 EADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEP 472



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 9/220 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY-ANDGN--EA 70
           P+  T+NT+I GLC+ G + KA ++   +K   + P+V TYNSLI G+C     GN    
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + L  EM++ G+    VTF V+++  CKN     A R+ + M Q G+        ++V Y
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGI------AASVVTY 302

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GLC  GK++   +L + +   GL PN +T+   +   C    M  A+D    M  
Sbjct: 303 NSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTE 362

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + V P+ VI+T L+  + R  +    + +  +M K+ + P
Sbjct: 363 RNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISP 402



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 112/204 (54%), Gaps = 6/204 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y  +IDG  + G ++ A  +   M  + I+PNV TYN LI GF  + D   A  
Sbjct: 366 EPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASG 425

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM ++G+++DVVT+NV++  LC   ++ +A +LLD M + G+ P      N + Y  
Sbjct: 426 LLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEP------NHLTYNT 479

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I G C  G +K+A E+   + +     NVVTYN+ I   C   +MD+A+DL  +M  K 
Sbjct: 480 IIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKC 539

Query: 193 VAPNCVIFTTLMPSFIRKNETSKV 216
           + PN + + T+    + K  T  +
Sbjct: 540 LVPNGITYETIKEGMMEKGYTPDI 563



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 112/211 (53%), Gaps = 6/211 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTYN++I GLC EG V++  +L  +M+D  ++PN +T+  ++ GFC      +A    
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWI 357

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M +R ++ DVV + +++D   +  KM++A  + + M + G+ P      N+  Y CLI
Sbjct: 358 DGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISP------NVTTYNCLI 411

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G  + G  ++A  L   +   G+  +VVTYN+ I ALC   ++ KA  L  +M   G+ 
Sbjct: 412 TGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLE 471

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           PN + + T++  F  K       E+   M+K
Sbjct: 472 PNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 9/218 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKE---LFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           P+  TYN++IDG CK+G          L  +M +  I+P  VT+  LI+G+C  ++   A
Sbjct: 224 PSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAA 283

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +F EM  +G+ + VVT+N ++  LC   K++E  +L++ M   G+ P      N + +
Sbjct: 284 VRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP------NEITF 337

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
           GC++ G CK G + +A +    +T   + P+VV Y I I       +M+ A  +   M  
Sbjct: 338 GCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAK 397

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           KG++PN   +  L+  F R  +      LL  M ++ +
Sbjct: 398 KGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGI 435



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T + N ++ GL     VD A++ F       ++P++ T+N++I G C      +A  
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNR---KMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           +  ++   GL   V T+N ++D  CK      M     LL  M++ G+ P A      V 
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTA------VT 266

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +G LI+G CK      A  + + + + G+  +VVTYN  I  LC++ ++++   L  +ME
Sbjct: 267 FGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEME 326

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             G++PN + F  ++  F +K   +   + +  M +RNV P   I +I++D
Sbjct: 327 DLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILID 377


>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
          Length = 348

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 109/200 (54%), Gaps = 6/200 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TVT++T+++GLC EG V +A  +  +M +  + PN+VT N+L++G C  +  +EAE 
Sbjct: 148 EPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCLKDQVSEAEA 207

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M++ G Q D  T+  I++ +CK+     A  LL  M    V+P       +V Y  
Sbjct: 208 LVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKP------QVVTYNM 261

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID LCK G    A  L   + R G+  +V+TYN  I   CN  + D    L  DM  + 
Sbjct: 262 IIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQLLRDMITRN 321

Query: 193 VAPNCVIFTTLMPSFIRKNE 212
           + PN V F+ L+  F+++ +
Sbjct: 322 ITPNVVTFSALIDCFVKEGK 341



 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T + +I+  C+   +  A  +  ++      P+ VT+++L++G C     +EA  +   M
Sbjct: 118 TLSIVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRM 177

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
           ++  ++ ++VT N +++ LC   ++ EA  L+D M++ G +PD F       YG +++ +
Sbjct: 178 VEMKVRPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQF------TYGPILNRI 231

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK G   +A +L + +    + P VVTYN+ I +LC +   D+A  LF +ME +G+  + 
Sbjct: 232 CKSGNTVSALDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADV 291

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + + +L+  F          +LLR M  RN+ P     S ++D  VK
Sbjct: 292 ITYNSLIGGFCNAGRWDDGAQLLRDMITRNITPNVVTFSALIDCFVK 338



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 6/134 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY  I++ +CK G    A +L  +M+D+ + P VVTYN +I   C   + +EA 
Sbjct: 217 CQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEAL 276

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM   G+++DV+T+N ++   C   + D+  +LL  MI   + P      N+V + 
Sbjct: 277 SLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQLLRDMITRNITP------NVVTFS 330

Query: 132 CLIDGLCKIGKLKN 145
            LID   K GKL N
Sbjct: 331 ALIDCFVKEGKLIN 344



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 6/224 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D A +LF  M      P+++ ++ L               L  +M  +G+   + T +++
Sbjct: 63  DDAVDLFQSMIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIV 122

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           ++  C+ RK+  A  +L  +++ G  PD       V +  L++GLC  G++  A  +   
Sbjct: 123 INCFCRRRKLGFAFSVLGKILKLGYEPDT------VTFSTLVNGLCLEGRVSEAVVIVDR 176

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +    + PN+VT N  ++ LC  +Q+ +A  L   M   G  P+   +  ++    +   
Sbjct: 177 MVEMKVRPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGN 236

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           T   ++LLR M+ + V P     ++I+D L KN     ++  FN
Sbjct: 237 TVSALDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFN 280


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++ G  KEG +  A+ +F  +    + P+VV++N+L++G+    D NE   L   M 
Sbjct: 139 FNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 IDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 KPSVV 417



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A  LF +M D+ + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D MI  G++PD       + Y  
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P    +T ++  F +K +     +LL+ M +    P
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKP 414



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +++   L   M+   + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANV 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D+GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   +   GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   K+        T   ++              
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M    K  ++  A  + D + + G+RP      ++V++  
Sbjct: 123 FYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K+G L     L  ++  +G+ P+V TY++ I+ LC + +MD A+ LF +M  KG
Sbjct: 177 LMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P + TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G +  VVT
Sbjct: 407 MQRDGYKPSVVT 418



 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 42/88 (47%)

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G   ++  +NI +H    + ++  A  +F  +   G+ P+ V F TLM  +I+  + ++ 
Sbjct: 131 GYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
             L  +M    V P     S++++ L K
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCK 218


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 124/263 (47%), Gaps = 29/263 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY T++DGLCKE  +D+A  L  +M+ E   P+ VT+N LI+G C   D     
Sbjct: 219 CEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVT 278

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-------- 123
            L   M  +G   + VT+N I++ LC   K+D+A  LLD M+     P+           
Sbjct: 279 KLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGL 338

Query: 124 ---------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                                  N  AY  LI GL K  K + A  L + +   G  PN+
Sbjct: 339 VKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNI 398

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V Y+  I  LC + ++D+A ++  +M  KG  PN   +++L+  F +   + K I + + 
Sbjct: 399 VVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKE 458

Query: 223 MDKRNVMPYASILSIIVDLLVKN 245
           M K N +P     S+++  L ++
Sbjct: 459 MAKNNCVPNEICYSVLIHGLCED 481



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 11/194 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN V Y+ +IDGLC+EG +D+AKE+  +M ++   PN  TY+SLI GF    +  +A 
Sbjct: 394 CQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAI 453

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ EM       + + ++V++  LC++ K+ EA  +   M+  G+RPD      +VAY 
Sbjct: 454 RVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPD------VVAYS 507

Query: 132 CLIDGLCKIGKLKNARELSQSL--TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            +I GLC  G ++   +L   +    +   P+VVTYNI + ALC    +  A DL   M 
Sbjct: 508 SMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSML 567

Query: 190 VKGVAPN---CVIF 200
            +G  P+   C IF
Sbjct: 568 DRGCNPDLITCNIF 581



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +++N +I  +CK G VD+A E+F +M  +   P+V TY +L+ G C  +  +EA  L
Sbjct: 186 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 245

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   G     VTFNV+++ LCK   M   T+L+D M   G  P      N V Y  +
Sbjct: 246 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVP------NEVTYNTI 299

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLC  GKL  A  L   +  +  +PN VTY   I+ L    +      L   +E +G 
Sbjct: 300 INGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH 359

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             N   ++TL+    ++ ++ + + L + M ++   P   + S ++D L +
Sbjct: 360 HANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCR 410



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 8/239 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFL--QMKDENINPNVVTYNSLIHGFCYANDGNE 69
           C+    ++N++++ + +EG   +A E +        NI+PNV+++N +I   C     + 
Sbjct: 147 CRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDR 206

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  +F EM  +  + DV T+  +MD LCK  ++DEA  LLD M   G  P +      V 
Sbjct: 207 AIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSS------VT 260

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LI+GLCK G +    +L  ++   G +PN VTYN  I+ LC   ++DKA  L   M 
Sbjct: 261 FNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMV 320

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
                PN V + TL+   +++  +   + LL S+++R         S ++  L K E S
Sbjct: 321 ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKS 379


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 7/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT +D L K G  D A ELF +++D    PN+V+YN+ IH    A   + A  
Sbjct: 258 RPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHE 317

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYG 131
           L  EM    ++ D V++N +M    K  +   A  LL  M +  GV PD      +++Y 
Sbjct: 318 LLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPD------LISYN 371

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
             +    K G+ + A EL       GL P+VV+YN  +HA     +  +A DLF  ME  
Sbjct: 372 TAMHVCAKAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEV 431

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           GVAP+ V F T M +  R  +    +++LR M+ R++ P     +I VD
Sbjct: 432 GVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVD 480



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 124/250 (49%), Gaps = 14/250 (5%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDG 67
           G+  +P++V+YNT++    K+     A EL  +MK+   ++P++++YN+ +H    A   
Sbjct: 324 GLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRW 383

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  L  E + +GLQ DVV++N +M    +  +  +A  L  +M + GV PD     N 
Sbjct: 384 ERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRV-SFNT 442

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             + C      +  K + A ++ + +    + PNV +Y I + A     + ++A +L  +
Sbjct: 443 AMHAC-----NRALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEE 497

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           MEV+GV  N   +T  M +  R     +V+ LL  MD + V P     +I +D       
Sbjct: 498 MEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMD------- 550

Query: 248 SLNSIPQFNR 257
           ++N + +++R
Sbjct: 551 AMNRVGKWDR 560



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 6/144 (4%)

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
           ++ DVV F + +    + R+  EA  +L  M   G+RPD      +V++   +D L K G
Sbjct: 222 IEVDVVGFTMAIKACGQARRWREALGVLREMQARGLRPD------LVSFNTAMDALGKAG 275

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           +   A EL   +   G  PN+V+YN  IHA      +D+AH+L  +M+   V P+ V + 
Sbjct: 276 QYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYN 335

Query: 202 TLMPSFIRKNETSKVIELLRSMDK 225
           T+M +F +KN+    +ELL  M +
Sbjct: 336 TVMAAFAKKNQWKAALELLAEMKE 359



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G   +P+ V+YNT++    + G   +A +LF  M++  + P+ V++N+ +H    A   
Sbjct: 394 LGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKW 453

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  +  EM  R +  +V ++ + +D   +  + + A  L++ M   GV        N+
Sbjct: 454 QAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGV------PANV 507

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y   +D  C+ G +     L + +   G+ PNVV+Y I + A+    + D+A  +   
Sbjct: 508 HTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQ 567

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNE 212
           M  +G+  + V + T + +  R  +
Sbjct: 568 MVQRGLRLDSVSYRTALSTAGRAGD 592



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 54/107 (50%)

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
           E+++V +   I    +  + + A  + + +   GL P++V++N  + AL    Q D A +
Sbjct: 223 EVDVVGFTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALE 282

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           LF ++E  G APN V + T + +  R     +  ELLR M   +V P
Sbjct: 283 LFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRP 329


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 130/248 (52%), Gaps = 9/248 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEA 70
           C P+ VTYNT+I+GLCK   V +  ELF +++   + +P++VTY S+I GFC +    EA
Sbjct: 209 CLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEA 268

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             LF EMM  G+Q +V+TFNV++D   K   + EA  +   M          C  ++V +
Sbjct: 269 SNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFD------CSADVVTF 322

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDG C+ G++ +  +    +    + P V TY + I+ALC + ++++A D    ++ 
Sbjct: 323 TSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKN 382

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI-IVDLLVKNEISL 249
             + P   ++  ++  F +     +   +L+ M+++   P     +I I+   VK  +  
Sbjct: 383 SSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRM-F 441

Query: 250 NSIPQFNR 257
            +I  FNR
Sbjct: 442 EAINIFNR 449



 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+T T+N +I GLC+ G VD+A E+F  M+     P+VVTYN+LI+G C AN+      L
Sbjct: 176 PDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCEL 235

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F E+  R     D+VT+  I+   CK+ KM EA+ L + M++ G++P      N++ +  
Sbjct: 236 FKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQP------NVITFNV 289

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG  KIG +  A  + + +       +VVT+   I   C   Q++     +  M+ + 
Sbjct: 290 LIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRN 349

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V+P    +  L+ +  ++N  ++  + L  +   +++P   + + ++D   K
Sbjct: 350 VSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCK 401



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY +II G CK G + +A  LF +M    I PNV+T+N LI GF    +  EAE
Sbjct: 245 CSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAE 304

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ +M      +DVVTF  ++D  C+  +++   +  ++M    V P  +       Y 
Sbjct: 305 AMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVY------TYA 358

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+ LCK  +L  AR+    +  + ++P    YN  I   C    +D+ + +  +ME K
Sbjct: 359 VLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEK 418

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              P+ V FT L+     K    + I +   M      P    ++ ++  L+K
Sbjct: 419 RCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLK 471



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 118/241 (48%), Gaps = 6/241 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N+  YN ++  L K+  V +A  LF +       P+  T+N LI G C     + A  +F
Sbjct: 142 NSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVF 201

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   G   DVVT+N +++ LC   K +E  R  +L  +   R D  C  +IV Y  +I
Sbjct: 202 KDMESFGCLPDVVTYNTLINGLC---KANEVQRGCELFKEIQSRSD--CSPDIVTYTSII 256

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G CK GK+K A  L + + R+G+ PNV+T+N+ I        + +A  ++  M     +
Sbjct: 257 SGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCS 316

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
            + V FT+L+  + R  + +  ++    M  RNV P     +++++ L K E  LN    
Sbjct: 317 ADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCK-ENRLNEARD 375

Query: 255 F 255
           F
Sbjct: 376 F 376



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 13/205 (6%)

Query: 39  FLQMKDENINPN--VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           FL+    N+N N    TYN L+   C     +    +F  M   G   D      ++  +
Sbjct: 59  FLEFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWM 118

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            +    D   +LL  +    VR      IN   Y  L+  L K  ++  A  L +     
Sbjct: 119 AQASDFDMVKKLLAEVQGKEVR------INSFVYNNLLSVLVKQNQVHEAIYLFKEYLVM 172

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
              P+  T+NI I  LC    +D+A ++F DME  G  P+ V + TL+    + NE  + 
Sbjct: 173 QSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRG 232

Query: 217 IELLRSMDKR-----NVMPYASILS 236
            EL + +  R     +++ Y SI+S
Sbjct: 233 CELFKEIQSRSDCSPDIVTYTSIIS 257



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    YN +IDG CK G VD+   +  +M+++  +P+ VT+  LI G C      EA  +
Sbjct: 387 PKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINI 446

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           F  M+      D +T N ++  L K    +EA R+  + ++
Sbjct: 447 FNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRIRKMALE 487


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 117/210 (55%), Gaps = 6/210 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 126 FNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMH 185

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVP------NGVTFTTLIDGHC 239

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN   + LC    + +AHDL  +M +KG+ P+ +
Sbjct: 240 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 299

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +TTL+    ++ +     E  + M + N+
Sbjct: 300 TYTTLIDGCCKEGDMETAFEHQKRMIQENI 329



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 112/211 (53%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M D+ + PN VT+ +LI G C     + A  
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 249

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N +   LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 250 IYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDK------ITYTT 303

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G ++ A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 304 LIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVG 363

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           + PN   +T ++  F +K +     +LL+ M
Sbjct: 364 LKPNXGTYTMIINEFCKKGDVWTGSKLLKEM 394



 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 155 RPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANE 214

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D+GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 215 LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 268

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L  GLCK G LK A +L   ++  GL P+ +TY   I   C +  M+ A +    M  + 
Sbjct: 269 LTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQEN 328

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V++T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 329 IRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKK 381



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 96/176 (54%), Gaps = 6/176 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+L +G C   D  +A  L
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDL 285

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   M+ A      MIQ  +R D       V Y  L
Sbjct: 286 IDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDD------VVYTAL 339

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           I GLC+ G+  +A ++ + +   GL PN  TY + I+  C    +     L  +M+
Sbjct: 340 ISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLKEMQ 395



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK   +  A  + D + + G+RP      ++V++  
Sbjct: 110 FYKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRP------SVVSFNT 163

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M  KG
Sbjct: 164 LMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 223

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 224 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 261



 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C +  +  A  +F  +   G
Sbjct: 94  VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWG 153

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 154 LRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCK 205


>gi|414882131|tpg|DAA59262.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1604

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 6/207 (2%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            K ++ TYN +I GL   G V K  +L L+M++E I P VVTYN++IHG   +     A+ 
Sbjct: 1187 KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQV 1246

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
             F EM   GL  DV+T+N +++  CK   + EA  L   + + G+ P       ++ Y  
Sbjct: 1247 KFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAP------TVLTYNI 1300

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            LIDG C++G L+ AR L + +   G +PNV TY I +    N   +  A + F +M  KG
Sbjct: 1301 LIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKG 1360

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIEL 219
            + P+C  + T + + +   + ++  EL
Sbjct: 1361 LQPDCFAYNTRICAELILGDIARAFEL 1387



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 9    GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
            G  C PN VTYN +I GL ++G +++A EL   M+      +  TYN LI G        
Sbjct: 1149 GSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK-KASSFTYNPLITGLLARGCVK 1207

Query: 69   EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            +   L +EM + G+   VVT+N ++  L ++  ++ A      M   G+ PD      ++
Sbjct: 1208 KVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPD------VI 1261

Query: 129  AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
             Y  L++G CK G LK A  L   L RAGL P V+TYNI I   C    +++A  L  +M
Sbjct: 1262 TYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEM 1321

Query: 189  EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              +G  PN   +T LM   +     +   E    M  + + P
Sbjct: 1322 GEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQP 1363



 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 6/210 (2%)

Query: 14   PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            P  VTYN +I GL + G V+ A+  F +M+   + P+V+TYNSL++G+C A +  EA  L
Sbjct: 1223 PTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLL 1282

Query: 74   FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            F ++   GL   V+T+N+++D  C+   ++EA  L + M + G  P      N+  Y  L
Sbjct: 1283 FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLP------NVCTYTIL 1336

Query: 134  IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            + G   +  L  ARE    +   GL P+   YN  I A      + +A +L   + ++G+
Sbjct: 1337 MKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGI 1396

Query: 194  APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            + + V +  L+    +        EL   M
Sbjct: 1397 SSDTVTYNILIHGLCKTGNLKDAKELQMKM 1426



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 31/180 (17%)

Query: 6    REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
            R  G++  P+ +TYN++++G CK G + +A  LF  ++   + P V+TYN LI G+C   
Sbjct: 1252 RAMGLL--PDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLG 1309

Query: 66   DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-- 123
            D  EA  L  EM ++G   +V T+ ++M      R +  A    D M+  G++PD F   
Sbjct: 1310 DLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYN 1369

Query: 124  ---------------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
                                         + V Y  LI GLCK G LK+A+EL   + R 
Sbjct: 1370 TRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVRG 1429



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 11/235 (4%)

Query: 7    EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYA 64
            E G+  +P+ VTYNT++D   KEG  DK   L  +M+       PN VTYN +I G    
Sbjct: 1112 ELGI--EPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRK 1169

Query: 65   NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
             D  EA  L +E M    ++   T+N ++  L     + +   L   M   G+ P     
Sbjct: 1170 GDLEEAAEL-VEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMP----- 1223

Query: 125  INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
              +V Y  +I GL + G ++ A+     +   GL+P+V+TYN  ++  C    + +A  L
Sbjct: 1224 -TVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLL 1282

Query: 185  FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            F D+   G+AP  + +  L+  + R  +  +   L   M ++  +P     +I++
Sbjct: 1283 FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILM 1337



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 11/203 (5%)

Query: 41   QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG---LQSDVVTFNVIMDELC 97
            +M +  I P++VTYN+L+  F      ++   L  EM  RG   L +DV T+NV++  L 
Sbjct: 1109 EMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDV-TYNVVITGLT 1167

Query: 98   KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
            +   ++EA  L++     G+R     + +   Y  LI GL   G +K   +L   +   G
Sbjct: 1168 RKGDLEEAAELVE-----GMRLSK--KASSFTYNPLITGLLARGCVKKVYDLQLEMENEG 1220

Query: 158  LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
            +MP VVTYN  IH L     ++ A   F +M   G+ P+ + + +L+  + +     + +
Sbjct: 1221 IMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEAL 1280

Query: 218  ELLRSMDKRNVMPYASILSIIVD 240
             L   + +  + P     +I++D
Sbjct: 1281 LLFGDLRRAGLAPTVLTYNILID 1303


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 126/267 (47%), Gaps = 32/267 (11%)

Query: 6   REFGVVC---KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           R  GV C   + N V+Y  +I GLC+ G + +A E + +M+++   P V TY  L+   C
Sbjct: 242 RACGVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALC 301

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-- 120
            +    EA  LF EM +RG + +V T+ V++D LCK  +MDEA ++L+ M++ GV P   
Sbjct: 302 ESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVV 361

Query: 121 -------AFCE--------------------INIVAYGCLIDGLCKIGKLKNARELSQSL 153
                  ++C+                     N+  Y  LI G C+   +  A  L   +
Sbjct: 362 PFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKM 421

Query: 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
             + L P+VVTYN  IH LC    +D A  LF  M   G +P+   F   M    R    
Sbjct: 422 VESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRV 481

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVD 240
            +  ++L S+ +++V       + ++D
Sbjct: 482 GEAHQILESLKEKHVKANEHAYTALID 508



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 8/244 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N   E GV   P+ V +N +I   CK G ++ A  +   M+ + + PNV TYN LI G
Sbjct: 347 MLNEMVEKGVA--PSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICG 404

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           FC     + A  L  +M++  L  DVVT+N ++  LC+   +D A+RL  LMI+ G  PD
Sbjct: 405 FCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPD 464

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
            +       +   +  LC++G++  A ++ +SL    +  N   Y   I   C   +++ 
Sbjct: 465 QW------TFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEH 518

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A  LF  M  +   PN + F  ++    ++ +    + L+  M K +V P     +I+V+
Sbjct: 519 AASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVE 578

Query: 241 LLVK 244
            ++K
Sbjct: 579 EVLK 582



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 15/228 (6%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           NGN  F     PN +T NT+++  CK G +  A+  F+++      P++ TY SL+ G+C
Sbjct: 181 NGNSVF-----PNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYC 235

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
             +D   A  +F  M  R    + V++  ++  LC+  K+ EA      M + G  P   
Sbjct: 236 RNDDVERACGVFCVMPRR----NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFP--- 288

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
               +  Y  L+  LC+ G+   A  L   +   G  PNV TY + I  LC + +MD+A 
Sbjct: 289 ---TVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEAL 345

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +  +M  KGVAP+ V F  L+ S+ ++      + +L  M+ + V P
Sbjct: 346 KMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCP 393



 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 9/210 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N   Y  +IDG CK G ++ A  LF +M  E   PN +T+N +I G        +A  
Sbjct: 497 KANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAML 556

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M    ++  + T+N++++E+ K    D A  +L+ +I  G +P      N+V Y  
Sbjct: 557 LVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQP------NVVTYTA 610

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I   C  G+L+ A E+   +   G++ +   YN+ I+A      +D A  +   M   G
Sbjct: 611 FIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTG 670

Query: 193 VAPNCVIFTTLMPSFI---RKNETSKVIEL 219
             P+ + ++ LM   +    K E S  + L
Sbjct: 671 CEPSYLTYSILMKHLVIEKHKKEGSNPVGL 700



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 13/221 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---PNVVTYNSLIHGFCYANDGNE 69
           K +  +YN ++  L +   VD+   L+ +M  +N N   PN++T N++++ +C   +   
Sbjct: 148 KLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAV 207

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A   F+ ++      D+ T+  ++   C+N  ++ A  +  +M +           N V+
Sbjct: 208 ARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRR----------NAVS 257

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI GLC+ GKL  A E    +   G  P V TY + + ALC   +  +A  LF +M 
Sbjct: 258 YTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMR 317

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +G  PN   +T L+    ++    + +++L  M ++ V P
Sbjct: 318 ERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAP 358



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 9/185 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN++T+N +IDGL KEG V  A  L   M   ++ P + TYN L+       D + A 
Sbjct: 531 CLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRAN 590

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-EINIVAY 130
            +   ++  G Q +VVT+   +   C   +++EA  ++  +   GV  D+F   + I AY
Sbjct: 591 EILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAY 650

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI-HALCNDEQMDKAHDLFLDME 189
           GC+       G L +A  + + +   G  P+ +TY+I + H +    + + ++ + LD+ 
Sbjct: 651 GCM-------GLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVS 703

Query: 190 VKGVA 194
           +  ++
Sbjct: 704 LTNIS 708



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY+ +I+GLCK G ++ A  L+  M++  I+P+ + +NSL+   C      EA 
Sbjct: 735 CVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAV 794

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM+    + + ++ +++  L +    ++A  +   +++ G   D       VA+ 
Sbjct: 795 TLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDE------VAWK 848

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            LIDGL K G +    EL   + + G   +  TY++ +  L
Sbjct: 849 VLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQEL 889



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 94/235 (40%), Gaps = 39/235 (16%)

Query: 6   REFGVVCKPNTVTYNTIIDGLC-----KEGF-------------VDKA-----------K 36
           R FG  C+P+ +TY+ ++  L      KEG              VD              
Sbjct: 665 RMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITT 724

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
            LF +M +    PN+ TY+ LI+G C     N A  L+  M + G+    +  N ++   
Sbjct: 725 VLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSC 784

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCE--INIVAYGCLIDGLCKIGKLKNARELSQSLT 154
           CK     EA  LLD M++        C    ++ +Y  LI GL +    + A  +  SL 
Sbjct: 785 CKLGMFGEAVTLLDSMME--------CSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLL 836

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
           R G   + V + + I  L     +D+  +L   ME  G   +   ++ LM    R
Sbjct: 837 RCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQELNR 891


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 5/216 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT I GLCK G +DK  E+  +M    I P+VVT+ S+I G C AN  ++A  +
Sbjct: 185 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQV 244

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M++RG   D +T+++++D L +  ++D    +L+ M        A C + +  +   
Sbjct: 245 FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQA----MKAGCVMEVYTHNAF 300

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  LC+ GK   A+ +   +  +G +PN+++YN  I  LC    +D A  L   M   G 
Sbjct: 301 IGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGC 360

Query: 194 A-PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             P+ + F TL+  F +    S+  +LL  M  +N+
Sbjct: 361 CKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNI 396



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 31/243 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  +IDGLCK      A +   +M      P++VTYNSLIHG C AN  ++A 
Sbjct: 41  CAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAG 100

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG------VRPD---AF 122
            +  E++  G   + +T++ ++   C+ R++D+A  L+  MI  G      V  D    F
Sbjct: 101 LVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGF 160

Query: 123 CEI----------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           CE                       ++V Y   I GLCK GKL    E+ + + R G+ P
Sbjct: 161 CEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPP 220

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           +VVT+   I  LC   ++D A  +F  M  +G  P+ + ++ ++ +  R N    V E+L
Sbjct: 221 DVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVL 280

Query: 221 RSM 223
             M
Sbjct: 281 EHM 283



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 43/267 (16%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTY T+IDGLCK G +D A+ L  +M D    PNVVTY +LI G C A   ++A    
Sbjct: 9   SVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTV 68

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+  G + D+VT+N ++  LC   +MD+A  +L  +++ G  P      N + Y  L+
Sbjct: 69  KRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAP------NHITYSTLV 122

Query: 135 DGLCKIGKLKNAREL-------------------------------------SQSLTRAG 157
              C+  +L  AR L                                        +  +G
Sbjct: 123 IWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESG 182

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
            +P+VVTYN  I  LC   ++DK  ++  +M+  G+ P+ V F +++    + N      
Sbjct: 183 RIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAF 242

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++ + M +R  +P +   SI++D L +
Sbjct: 243 QVFKGMLERGCVPDSLTYSIMLDNLSR 269



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 8/233 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C     T+N  I  LC+ G    AK + L M +    PN+++YN +I G C + + ++A 
Sbjct: 290 CVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAW 349

Query: 72  YLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            L  +M+D G  + DV+ FN ++   CK  ++ +A +LL  M     +    C  ++V Y
Sbjct: 350 KLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEM-----KAKNICVPDVVTY 404

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LIDG  K G LK A+ L Q +   G  PNVVTY   I+        ++A  LF +M  
Sbjct: 405 NTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSA 464

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           KG  P+ + + T++ +F +    SK   + + +  +N   Y S  +I   +L+
Sbjct: 465 KGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQL--KNKTSYCSPDAITYRILI 515



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 5/229 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C P+ VTYNT+IDG  K G + +AK L  +M+     PNVVTY +LI+G+       EA
Sbjct: 396 ICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEA 455

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           E LF EM  +G   D++T+N ++    K   M +A    + + Q      ++C  + + Y
Sbjct: 456 ESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKA----EGVYQQLKNKTSYCSPDAITY 511

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM-DKAHDLFLDME 189
             LIDG C+    +    L Q +T  G   +  TYN+ I  L   E++  KA  ++  M 
Sbjct: 512 RILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQML 571

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
            +   P+  IF +L+  F+R  + +    +++ M+++  +  AS L  +
Sbjct: 572 DQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHLVDASNLEAL 620



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 44/244 (18%)

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M     + +VVTY +LI G C + D + A+ L  +M D G   +VVT+  ++D LCK R+
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
             +A + +  M++ G  PD      +V Y  LI GLC   ++ +A  + Q L R G  PN
Sbjct: 61  PHDAIQTVKRMLRSGCEPD------LVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPN 114

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA--------------------------- 194
            +TY+  +   C   ++D+A  L  +M ++G                             
Sbjct: 115 HITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRD 174

Query: 195 ----------PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLV 243
                     P+ V + T +    +  +  K +E+L  MD+  + P   +  SII  L  
Sbjct: 175 GDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCK 234

Query: 244 KNEI 247
            N I
Sbjct: 235 ANRI 238


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 124/263 (47%), Gaps = 29/263 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY T++DGLCKE  +D+A  L  +M+ E   P+ VT+N LI+G C   D     
Sbjct: 203 CEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVT 262

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-------- 123
            L   M  +G   + VT+N I++ LC   K+D+A  LLD M+     P+           
Sbjct: 263 KLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGL 322

Query: 124 ---------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                                  N  AY  LI GL K  K + A  L + +   G  PN+
Sbjct: 323 VKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNI 382

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V Y+  I  LC + ++D+A ++  +M  KG  PN   +++L+  F +   + K I + + 
Sbjct: 383 VVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKE 442

Query: 223 MDKRNVMPYASILSIIVDLLVKN 245
           M K N +P     S+++  L ++
Sbjct: 443 MAKNNCVPNEICYSVLIHGLCED 465



 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 11/194 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN V Y+ +IDGLC+EG +D+AKE+  +M ++   PN  TY+SLI GF    +  +A 
Sbjct: 378 CQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAI 437

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ EM       + + ++V++  LC++ K+ EA  +   M+  G+RPD      +VAY 
Sbjct: 438 RVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPD------VVAYS 491

Query: 132 CLIDGLCKIGKLKNARELSQSL--TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            +I GLC  G ++   +L   +    +   P+VVTYNI + ALC    +  A DL   M 
Sbjct: 492 SMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSML 551

Query: 190 VKGVAPN---CVIF 200
            +G  P+   C IF
Sbjct: 552 DRGCNPDLITCNIF 565



 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +++N +I  +CK G VD+A E+F +M  +   P+V TY +L+ G C  +  +EA  L
Sbjct: 170 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 229

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   G     VTFNV+++ LCK   M   T+L+D M   G  P      N V Y  +
Sbjct: 230 LDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVP------NEVTYNTI 283

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLC  GKL  A  L   +  +  +PN VTY   I+ L    +      L   +E +G 
Sbjct: 284 INGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH 343

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             N   ++TL+    ++ ++ + + L + M ++   P   + S ++D L +
Sbjct: 344 HANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCR 394



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 8/239 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFL--QMKDENINPNVVTYNSLIHGFCYANDGNE 69
           C+    ++N++++ + +EG   +A E +        NI+PNV+++N +I   C     + 
Sbjct: 131 CRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDR 190

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  +F EM  +  + DV T+  +MD LCK  ++DEA  LLD M   G  P +      V 
Sbjct: 191 AIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSS------VT 244

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  LI+GLCK G +    +L  ++   G +PN VTYN  I+ LC   ++DKA  L   M 
Sbjct: 245 FNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMV 304

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
                PN V + TL+   +++  +   + LL S+++R         S ++  L K E S
Sbjct: 305 ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKS 363


>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
 gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
          Length = 447

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 129/296 (43%), Gaps = 66/296 (22%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R  G  C PN  TY+T++D LCK G   +A  L  +M  +  +PNVVTYN+LI GF    
Sbjct: 89  RRIGEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLE 148

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL-------------- 111
             +E   L  EM  RG ++DV+T+ +I+D  CKN  +DEA RLL+               
Sbjct: 149 RLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFT 208

Query: 112 -------------------MIQGGVRPDAF-----------------------------C 123
                              MIQ G RP+                               C
Sbjct: 209 ALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGC 268

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
           + + V+Y  L+      G+  ++ EL   +  +G + +  T N+ IH  C    + +AH 
Sbjct: 269 KTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQ 328

Query: 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM----DKRNVMPYASIL 235
           LF  M  +G  P+ V + TL+ +F +  +    ++LL  M     K NV+ Y SI+
Sbjct: 329 LFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSII 384



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 9/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V+Y  ++ G CK G   +A EL  +MK   + PNVV + ++I G C A   ++A  L 
Sbjct: 29  NEVSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQA-LLH 87

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
              +      +V T++ ++D LCK+ +  EA  L+  M++ G  P      N+V Y  LI
Sbjct: 88  FRRIGEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSP------NVVTYNALI 141

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K+ +L     L + +++ G   +V+TY + +   C +  +D+A+ L   +E + V 
Sbjct: 142 DGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVV 201

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
               +FT L  S    + T++ + LL  M +    P       ++ +L KN
Sbjct: 202 TYNSLFTAL--STAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKN 250



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 28/238 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V + TII GLC  G V +A   F ++  E+  PNV TY++L+   C +   +EA  
Sbjct: 62  RPNVVIHTTIIRGLCTAGKVSQALLHFRRI-GEDCAPNVYTYSTLVDALCKSGQPHEAYG 120

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA---------FC 123
           L  EM+ +G   +VVT+N ++D   K  ++DE   LL  M Q G R D          FC
Sbjct: 121 LVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFC 180

Query: 124 ----------------EINIVAYGCLIDGLCKIGKLKNARELS--QSLTRAGLMPNVVTY 165
                           + N+V Y  L   L      +    LS  + + + G  PN V Y
Sbjct: 181 KNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNY 240

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
              +  LC + ++D+A+ + L M  +G   + V +  L+ +F     T   +ELL  M
Sbjct: 241 RTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRM 298



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 9/202 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y T++  LCK   +D+A ++ L M  +    + V+Y  L+  F  A    ++  
Sbjct: 234 RPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLE 293

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+  G   D  T NV++ + CK   + EA +L   M Q G  P        V Y  
Sbjct: 294 LLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSN------VTYNT 347

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   CK  +   A +L   + +A   PNV+TYN  I + C +++ ++A  +F  M   G
Sbjct: 348 LIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDNG 407

Query: 193 VAPNCVIFTTLMPSFIRKNETS 214
             P+ V +TTL  S   KNE +
Sbjct: 408 CFPDRVSYTTLKLS---KNEAA 426



 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 117/269 (43%), Gaps = 37/269 (13%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA--NDGNE 69
           C+ + +TY  I+D  CK   +D+A  L   ++  N    VVTYNSL      A  +   E
Sbjct: 165 CRADVITYTMILDIFCKNNSIDEAYRLLNALEKRN----VVTYNSLFTALSTAEGDRTTE 220

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR-LLDLMIQGGVRPDAFCEINIV 128
           A  L  +M+  G + + V +  ++  LCKN ++DEA + LL +  QG    D   +I +V
Sbjct: 221 ALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVV 280

Query: 129 AYG----------------------------CLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           A+                              +I   CK G L  A +L +S+ + G +P
Sbjct: 281 AFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIP 340

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           + VTYN  I A C  +Q D A  L   M      PN + + +++ SF R+    +   + 
Sbjct: 341 SNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIF 400

Query: 221 RSMDKRNVMPYASILSIIVDLLVKNEISL 249
           + M      P    +S     L KNE ++
Sbjct: 401 QMMVDNGCFP--DRVSYTTLKLSKNEAAI 427



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 19/175 (10%)

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           V++ ++M   CK  +  +A  LLD M   GVRP      N+V +  +I GLC  GK+  A
Sbjct: 31  VSYGILMQGFCKAGEFQQALELLDEMKSNGVRP------NVVIHTTIIRGLCTAGKVSQA 84

Query: 147 ----RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
               R + +        PNV TY+  + ALC   Q  +A+ L  +M  KG +PN V +  
Sbjct: 85  LLHFRRIGEDCA-----PNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNA 139

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           L+  F +     +V+ LL+ M +R         ++I+D+  KN    NSI +  R
Sbjct: 140 LIDGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKN----NSIDEAYR 190


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+ T+N +    C++G VDK  +   +M++E   P++VTYN+LI  +C     ++A YL
Sbjct: 247 PNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYL 306

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  M  R +  D+V++  +M+ LCK  K+ EA +L   MI  G+ PD      IV++  L
Sbjct: 307 YRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPD------IVSFNTL 360

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK GK++ +R L   +  +G+ P+ VT  + I     + ++  A +L +++E  GV
Sbjct: 361 ICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGV 420

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
             +  I+  LM S   +        LL+ + +R  +P   I + +++ L K++
Sbjct: 421 PISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSD 473



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 116/219 (52%), Gaps = 6/219 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C P+ ++ N +++GL K   +D+  +++ +M    I+PN  T+N L H FC   D ++
Sbjct: 208 VGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDK 267

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
                  M + G + D+VT+N ++   C+  ++D+A  L  +M +  V PD      +V+
Sbjct: 268 VNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPD------LVS 321

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  L++GLCK GK++ A +L   +   GL P++V++N  I   C + +M ++  L  +M 
Sbjct: 322 YTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMI 381

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             G+ P+ V    L+  + ++      + L+  +++  V
Sbjct: 382 GSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGV 420



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYNT+I   C++G +D A  L+  M   N+ P++V+Y +L++G C      EA  
Sbjct: 281 EPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQ 340

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYG 131
           LF  M+ RGL  D+V+FN ++   CK  KM E+  LL  MI  G+ PD   C++      
Sbjct: 341 LFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQV------ 394

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G  K  ++ +A  L   L R G+  +   Y+  + ++C + +   A  L   +  +
Sbjct: 395 -LIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQR 453

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P   I+  L+ S  + +  +  + +   M  RN+ P A     ++  L +   S+ +
Sbjct: 454 GYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEA 513



 Score =  100 bits (248), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 111/219 (50%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + V ++ ++    +EG + +    F ++ +    P+V++ N L++G    N  ++  
Sbjct: 175 CNWDPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCW 234

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++ EM   G+  +  TFN++    C++  +D+    L+ M + G  PD      IV Y 
Sbjct: 235 QVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPD------IVTYN 288

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI   C+ G+L +A  L + + R  ++P++V+Y   ++ LC + ++ +AH LF  M  +
Sbjct: 289 TLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHR 348

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P+ V F TL+  + ++ +  +   LL  M    + P
Sbjct: 349 GLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICP 387



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 41/247 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+Y  +++GLCKEG V +A +LF +M    +NP++V++N+LI G+C      E+  L
Sbjct: 317 PDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSL 376

Query: 74  FIEMMDRGLQSDVVT-----------------------------------FNVIMDELCK 98
             EM+  G+  D VT                                   ++ +M  +C+
Sbjct: 377 LHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICE 436

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             +   A  LL  + Q G  P       +  Y  LI+ LCK   + +A  +   +    +
Sbjct: 437 EGRPFAAKSLLQRISQRGYVP------GVEIYNKLIESLCKSDSIADALLVKSEMGHRNI 490

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+ +TY   I  LC   +  +A  L  +M   G+ P+  I   LM  + ++ +  K   
Sbjct: 491 KPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAET 550

Query: 219 LLRSMDK 225
           LL++  K
Sbjct: 551 LLQTFAK 557



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 23/205 (11%)

Query: 44  DENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM----DRGLQSDVVTFNVIMDELCKN 99
           D  + P++  Y  L+H   ++ +  EA     E++    D     DV  F  ++   C++
Sbjct: 118 DLGLQPSIQNYCFLVHILAWSKEFKEAMKFLTELIKLVKDCSFNEDV--FQTLL-FCCQD 174

Query: 100 RKMDEATRLLDLMIQGGVRP--------------DAFCEINIVAYGCLIDGLCKIGKLKN 145
              D    + D++++  VR               +  C  ++++  CL++GL K+ ++  
Sbjct: 175 CNWDPV--IFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQ 232

Query: 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205
             ++ + + R G+ PN  T+NI  H  C D  +DK +D    ME +G  P+ V + TL+ 
Sbjct: 233 CWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLIS 292

Query: 206 SFIRKNETSKVIELLRSMDKRNVMP 230
            + RK        L R M +RNV+P
Sbjct: 293 CYCRKGRLDDAFYLYRIMYRRNVLP 317



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 6/167 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    YN +I+ LCK   +  A  +  +M   NI P+ +TY +LI   C  +   EAE L
Sbjct: 457 PGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESL 516

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+  G+  D      +M   CK R + +A  LL    +       F   +  +Y  L
Sbjct: 517 MEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAK------EFQIFDSESYNTL 570

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           +   C+        EL   + + G  PN+ T+   IH L     ++K
Sbjct: 571 VKTYCEDADATRLMELQDRMLKVGFAPNIQTFRQMIHGLWKAMAVEK 617



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 10/209 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FGV    +T  Y+ ++  +C+EG    AK L  ++      P V  YN LI   C ++  
Sbjct: 418 FGV--PISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSI 475

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA-FCEIN 126
            +A  +  EM  R ++   +T+  ++  LC+  +  EA  L++ M+Q G+ PD   C   
Sbjct: 476 ADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRAL 535

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +  Y       CK   +  A  L Q+  +   + +  +YN  +   C D    +  +L  
Sbjct: 536 MHVY-------CKERDIGKAETLLQTFAKEFQIFDSESYNTLVKTYCEDADATRLMELQD 588

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
            M   G APN   F  ++    +     K
Sbjct: 589 RMLKVGFAPNIQTFRQMIHGLWKAMAVEK 617


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T   II G CKEG + +A +   +MKD  + PN+V +NSLI GF  A D +    
Sbjct: 280 QPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNE 339

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G++ DV+TF+ IM+       MD+   + D M++  ++PDA        Y  
Sbjct: 340 VLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAH------VYSI 393

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L  G  + G+ + A E+  ++ ++G  PNVV +   I+  C+  +M+ A  +F  M   G
Sbjct: 394 LAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECG 453

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +APN   F TL+  +    +  K  E+L+ M++ NV P  + L ++ +
Sbjct: 454 IAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAE 501



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 9/234 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELF-LQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KP T T+NT+I G    G  +++++L  L  +DEN+ PN+ TYN L+  +C   +  +A 
Sbjct: 174 KPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAW 233

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-DAFCEINIVAY 130
            +  +M+  GLQ D VT+N I     +N +  +A  ++  M    V+P +  C I     
Sbjct: 234 NVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCI----- 288

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I G CK GK+K A +    +   GL PN+V +N  I    +    D  +++   ME 
Sbjct: 289 --IIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEE 346

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            GV P+ + F+T+M ++       K  E+   M K  + P A + SI+    V+
Sbjct: 347 FGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVR 400



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TYN ++   C +  + KA  +  +M    + P+ VTYN++   +    + ++AE 
Sbjct: 210 RPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEG 269

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           + +EM +  +Q +  T  +I+   CK  K+ EA + +  M   G++P      N+V +  
Sbjct: 270 IILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQP------NLVVFNS 323

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G           E+   +   G+ P+V+T++  ++A      MDK  ++F DM    
Sbjct: 324 LIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKAR 383

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+  +++ L   ++R  E  K  E+L +M K    P   I + I++
Sbjct: 384 IQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIIN 431



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 30/202 (14%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------- 120
            E + +   +++ G +  +VT+  ++  L   +  D    ++  + + G+ PD       
Sbjct: 89  QEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAV 148

Query: 121 --AFCEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTR-AG 157
             AF E                         +  LI G    G+ + +++L + +++   
Sbjct: 149 INAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDEN 208

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PN+ TYN+ + A CN + + KA ++   M   G+ P+ V + T+  ++ +  E S+  
Sbjct: 209 VRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAE 268

Query: 218 ELLRSMDKRNVMPYASILSIIV 239
            ++  M   NV P      II+
Sbjct: 269 GIILEMQNSNVQPNERTCCIII 290



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + TII+G C  G ++ A ++F +M +  I PN+ T+ +LI G+  A    ++E +
Sbjct: 421 PNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEV 480

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
              M +  +Q +  T  ++ +         EA R+L 
Sbjct: 481 LQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILS 517



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M+ + +  +  E   +LD +I+GG +P      ++V Y  L+  L       +   +  
Sbjct: 78  LMNIMIEKGRPQEVQSILDSIIEGGHKP------SLVTYTTLLAALTIQKHFDSIHSIIS 131

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G+ P+ + +N  I+A      M +A   F  M+  G  P    F TL+  +    
Sbjct: 132 QVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAG 191

Query: 212 ETSKVIELLRSMDK-RNVMPYASILSIIV 239
           E  +  +LL  M +  NV P     +++V
Sbjct: 192 EPEESQKLLELMSQDENVRPNLRTYNVLV 220


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 133/265 (50%), Gaps = 48/265 (18%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVD--KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           CKPN +TYNTIID  C +G VD  KA ++F +M+ E + P+ +T+NSLI      +   +
Sbjct: 265 CKPNLITYNTIIDA-CGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWED 323

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM--------------------------- 102
           ++ +F EM  RG++ D+ T+N ++D +CK  +M                           
Sbjct: 324 SQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMID 383

Query: 103 --------DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
                   +EA  L   M + GVRPD       V+Y  LID   K+G+  +A    + + 
Sbjct: 384 GYGKLGCFEEAIGLYHDMKESGVRPDR------VSYNTLIDIYAKLGRFDDALTACKDME 437

Query: 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF----IRK 210
           R GL  +VVTYN  I A     +   A  LF  M+ +G+ PN + ++ L+ ++    + +
Sbjct: 438 RVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQ 497

Query: 211 NETSKVIELLRSMDKRNVMPYASIL 235
           + TS  +E  R+  K +V+ Y+S++
Sbjct: 498 DATSIFVEFKRAGLKPDVVLYSSLI 522



 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           TYNT+ID +CK G ++ A  +   M+ +NI+PNVVTY+++I G+       EA  L+ +M
Sbjct: 342 TYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDM 401

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            + G++ D V++N ++D   K  + D+A      M + G++ D      +V Y  LID  
Sbjct: 402 KESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKAD------VVTYNALIDAY 455

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
            K GK K+A  L   +   GL+PNV+TY+  I A         A  +F++ +  G+ P+ 
Sbjct: 456 GKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDV 515

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V++++L+ S  +       + LL+ M +  + P     + ++D   +N
Sbjct: 516 VLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRN 563



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 6/203 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+T+IDG  K G  ++A  L+  MK+  + P+ V+YN+LI  +      ++A   
Sbjct: 373 PNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTA 432

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   GL++DVVT+N ++D   K  K  +A  L D M   G+ P      N++ Y  L
Sbjct: 433 CKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVP------NVLTYSAL 486

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID   K G  ++A  +     RAGL P+VV Y+  I + C    ++ A  L  +M   G+
Sbjct: 487 IDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGI 546

Query: 194 APNCVIFTTLMPSFIRKNETSKV 216
            PN V + +L+ ++ R  +   V
Sbjct: 547 QPNIVTYNSLIDAYGRNGQVDNV 569



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 28/228 (12%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VTYN +ID   K+G    A  LF +MK E + PNV+TY++LI  +  A    +A  
Sbjct: 442 KADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATS 501

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F+E    GL+ DVV ++ ++D  CK   +++A  LL  M Q G++P      NIV Y  
Sbjct: 502 IFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQP------NIVTYNS 555

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMP------------NVVTYNITIHALCNDEQ-MD 179
           LID   + G++ N           G MP             ++   +T     ND   + 
Sbjct: 556 LIDAYGRNGQVDNVE------AAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHTGVL 609

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIR---KNETSKVIELLRSMD 224
            A  +F +M+  G+ PN V F+ ++ +  R     E S ++E +R  D
Sbjct: 610 AAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVLLEQMRFFD 657



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 8/174 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E GV  +P+ V+YNT+ID   K G  D A      M+   +  +VVTYN+LI  +    
Sbjct: 402 KESGV--RPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQG 459

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  LF +M   GL  +V+T++ ++D   K     +AT +     + G++PD     
Sbjct: 460 KYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPD----- 514

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
            +V Y  LID  CK G +++A  L Q +T+AG+ PN+VTYN  I A   + Q+D
Sbjct: 515 -VVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVD 567



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 108/226 (47%), Gaps = 11/226 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN-DGNEAEYL 73
           N   Y+ ++    + G   +A ++F  MK     PN++TYN++I        D  +A  +
Sbjct: 233 NVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDI 292

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G++ D +TFN ++    +    +++ R+   M + G+  D F       Y  L
Sbjct: 293 FEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIF------TYNTL 346

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID +CK G+++ A  +  S+    + PNVVTY+  I         ++A  L+ DM+  GV
Sbjct: 347 IDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGV 406

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
            P+ V + TL+  + +       +   + M+    K +V+ Y +++
Sbjct: 407 RPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALI 452



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 109/225 (48%), Gaps = 9/225 (4%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           +I  L + G V+ A ++F + +      NV  Y++++  +  +    EA  +F  M   G
Sbjct: 205 MISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAG 264

Query: 82  LQSDVVTFNVIMDELCKNR-KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
            + +++T+N I+D   K    + +A  + + M + GV PD       + +  LI  +C  
Sbjct: 265 CKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDR------ITFNSLI-AVCSR 317

Query: 141 GKL-KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
           G L ++++ +   + R G+  ++ TYN  I A+C   QM+ A  +   M +K ++PN V 
Sbjct: 318 GSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVT 377

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++T++  + +     + I L   M +  V P     + ++D+  K
Sbjct: 378 YSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAK 422



 Score = 39.3 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           F  ++ EL    + + A +  + M+Q G     + ++  +    +I  L ++GK++ A +
Sbjct: 165 FPYLLRELGNRGEWERALQGYEWMVQQGHLRSEWSKLASI----MISTLGRLGKVEIALD 220

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           +     +AG   NV  Y+  + A     +  +A  +F  M+  G  PN + + T++ +  
Sbjct: 221 VFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACG 280

Query: 209 RKN-ETSKVIELLRSMDKRNVMP 230
           +   +  K +++   M K  V P
Sbjct: 281 KGGVDLKKALDIFEEMQKEGVEP 303


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 117/248 (47%), Gaps = 22/248 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +I  LC+   VDKA  LF +MK   +NP+V TY  LI  FC A    +A+  
Sbjct: 450 PDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSW 509

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   G   +VVT+  ++    K++++ +A  +   M+     P+A      + Y  L
Sbjct: 510 FDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNA------ITYSAL 563

Query: 134 IDGLCKIGKLKNARELSQSLTRAG----------------LMPNVVTYNITIHALCNDEQ 177
           IDGLCK G+++ A E+   L                    + PNVVTY   ++ LC  ++
Sbjct: 564 IDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQK 623

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
           +  AHDL   M   G  PN +++  L+  F +  E     E+   M K   +P     + 
Sbjct: 624 VSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTS 683

Query: 238 IVDLLVKN 245
           ++D + K+
Sbjct: 684 LIDRMFKD 691



 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 22/249 (8%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA------- 64
           C PN VTY  ++    K   + +A ++F +M  +   PN +TY++LI G C A       
Sbjct: 518 CSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKAC 577

Query: 65  ---------NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
                    +D  E+++ F       +  +VVT+  +++ LCK +K+ +A  LLD M+  
Sbjct: 578 EVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAA 637

Query: 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175
           G      CE N + Y  L+DG CK+G++ +A+E+   +T+ G +P+V TY   I  +  D
Sbjct: 638 G------CEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKD 691

Query: 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235
            ++D A  +   M      PN V +T ++    +  ET K + LL  M+K+   P     
Sbjct: 692 GRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTY 751

Query: 236 SIIVDLLVK 244
           + ++D L K
Sbjct: 752 TALIDGLGK 760



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 125/252 (49%), Gaps = 22/252 (8%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM---------------KD-ENIN 48
           +R  G  C PN +TY+ +IDGLCK G + KA E++ ++               KD + I+
Sbjct: 546 HRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTIS 605

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           PNVVTY +L++G C A   ++A  L   M+  G + + + ++ ++D  CK  ++D A  +
Sbjct: 606 PNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEV 665

Query: 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
              M + G  P      ++  Y  LID + K G+L  A ++   + +    PNVVTY   
Sbjct: 666 FLRMTKCGYLP------SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAM 719

Query: 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           +  LC   + +KA +L   ME KG +PN V +T L+    +  +    +EL   M  +  
Sbjct: 720 VDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGC 779

Query: 229 MPYASILSIIVD 240
            P      I+++
Sbjct: 780 APNYVTYRILIN 791



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 16/232 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T++ G  K+  +   K +   M  E  NP+   +NSL+H +C A D   A  L
Sbjct: 304 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKL 363

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRK------MDEATRLLDLMIQGGVRPDAFCEINI 127
           F  M   G     V +N+ +  +C   +      +D A ++ + M+       A C +N 
Sbjct: 364 FNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLV------ASCVLNK 417

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           +        LC +GK + A ++ + + R G +P+  TY   I  LC  +++DKA  LF +
Sbjct: 418 INTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQE 477

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKN---ETSKVIELLRSMD-KRNVMPYASIL 235
           M+  GV P+   +T L+ SF +     +     + +RS     NV+ Y ++L
Sbjct: 478 MKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALL 529



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 42/253 (16%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY  ++DGLCK G  +KA  L   M+ +  +PNVVTY +LI G   A   +   
Sbjct: 709 CNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGL 768

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCK--------------------------------- 98
            LF++M  +G   + VT+ ++++  C                                  
Sbjct: 769 ELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGF 828

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
           +++   +  LL+ M      P A        YG LID   K G+L+ A EL + +     
Sbjct: 829 SKRFLASLGLLEEMESHDTAPIA------PVYGMLIDSFSKAGRLETALELHKEMMEVSS 882

Query: 159 MPNVVTYNIT---IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
             N+ + ++    I ALC   Q+++A  L+ +M  +G+ P+   F  L+   I +N+ ++
Sbjct: 883 SLNMASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNE 942

Query: 216 VIELLRSMDKRNV 228
            ++L   + +  V
Sbjct: 943 ALQLCYGICQEGV 955



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 97/249 (38%), Gaps = 47/249 (18%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   +N+++   C       A +LF +M      P  V YN  I   C   +    E
Sbjct: 337 CNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPE 396

Query: 72  YLFI-----------------------------------------EMMDRGLQSDVVTFN 90
            L +                                         EMM +G   D  T+ 
Sbjct: 397 LLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYT 456

Query: 91  VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150
            ++  LC+ +++D+A  L   M + GV PD +       Y  LID  CK G ++ A+   
Sbjct: 457 KVITFLCQAKRVDKAFLLFQEMKKVGVNPDVY------TYTILIDSFCKAGLIEQAQSWF 510

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
             +  AG  PNVVTY   +HA    +Q+ +A+D+F  M      PN + ++ L+    + 
Sbjct: 511 DEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKA 570

Query: 211 NETSKVIEL 219
            E  K  E+
Sbjct: 571 GEIQKACEV 579



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 43/247 (17%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFL------------------------------- 40
           C+PN + Y+ ++DG CK G +D A+E+FL                               
Sbjct: 639 CEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM 698

Query: 41  ----QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
               QM  ++ NPNVVTY +++ G C   +  +A  L   M  +G   +VVT+  ++D L
Sbjct: 699 KVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGL 758

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            K  K+D    L   M   G  P      N V Y  LI+  C  G L +A  L   + + 
Sbjct: 759 GKAGKVDAGLELFMQMKTKGCAP------NYVTYRILINHCCAAGLLDDAHLLLDEMKQT 812

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
                +  Y  T+      ++   +  L  +ME    AP   ++  L+ SF +       
Sbjct: 813 HWPKYLQGYRTTVQGF--SKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETA 870

Query: 217 IELLRSM 223
           +EL + M
Sbjct: 871 LELHKEM 877



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 82/219 (37%), Gaps = 26/219 (11%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N ++   C +G   +A E   ++KD    P+ VTYN+L+     A     A  +  EM  
Sbjct: 173 NVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSA 232

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDL------------MIQGGVRPDAFCEI-- 125
            G   D  T       LCK  +  +A  LL+             MI G +    F E   
Sbjct: 233 SGFCMDRSTVGSFAQALCKEGRWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMS 292

Query: 126 ------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
                       N+V Y  L+ G  K  +L   + +   +   G  P+   +N  +H  C
Sbjct: 293 FLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYC 352

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           N E    A+ LF  M   G  P  V++   + S   + E
Sbjct: 353 NAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREE 391



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT---YNSLIHGFCYANDGNEA 70
           P    Y  +ID   K G ++ A EL  +M + + + N+ +   + SLI   C ++   EA
Sbjct: 849 PIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEA 908

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--FCE 124
             L+ EM  RG+  D+  F  ++  L +  K +EA +L   + Q GV  +   FC+
Sbjct: 909 VALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEGVNWEGNKFCD 964



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 91/245 (37%), Gaps = 9/245 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K     Y+ + + L  E     A+ L  ++ +++ +      N L+   C      EA  
Sbjct: 131 KHTGACYDALAEVLGFEDPARTAERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALE 190

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               + D G +   VT+N ++  L    +++ A R     +Q  +    FC ++    G 
Sbjct: 191 ELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFR-----VQKEMSASGFC-MDRSTVGS 244

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
               LCK G+  +A +L   L R     + V     I  L      ++A      M    
Sbjct: 245 FAQALCKEGRWGDALDL---LEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNS 301

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
             PN V + TL+  F++K +      ++  M      P  S+ + +V      E    + 
Sbjct: 302 YIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAY 361

Query: 253 PQFNR 257
             FNR
Sbjct: 362 KLFNR 366


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 125/262 (47%), Gaps = 30/262 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +++GLC+      A+E+F +MK     PN +TY +LI     A + +EA  +
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV----- 128
            IE     L +DV+T   I+  LCK  ++D+A + ++ M Q GVRP+     N+V     
Sbjct: 181 MIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQ 240

Query: 129 -------------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                    AY   +D LCK G L  AR+  + L ++G++P+VV
Sbjct: 241 HGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVV 300

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY++ I+      Q D + +L  DM   GV P+ V ++TL+    ++ +      LL  M
Sbjct: 301 TYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELM 360

Query: 224 DKRNVMPYASILSIIVDLLVKN 245
           +     P     + ++D L K+
Sbjct: 361 EAAGSPPNVVTYNSVMDGLCKS 382



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 112/210 (53%), Gaps = 6/210 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
               Y   +D LCK G++D+A++   +++   + P+VVTY+ LI+ F  A   + +  L 
Sbjct: 263 EAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELL 322

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   G++ DVVT++ +++ LCK RK  +A RLL+LM   G  P      N+V Y  ++
Sbjct: 323 EDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPP------NVVTYNSVM 376

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK GK+     + + + ++   P+VVTY+I ++ L     +D A  LF  ++     
Sbjct: 377 DGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREG 436

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           P+   ++ ++ S  R  +  +   +   M+
Sbjct: 437 PDAAAYSMVITSLCRAGKLEEACGMYHGME 466



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 12/225 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ GVV  P+ VTY+ +I+   + G  D + EL   M+   + P+VVTY++LI+  C   
Sbjct: 291 RQSGVV--PDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKER 348

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  L   M   G   +VVT+N +MD LCK+ KMDE  R+ ++M++    PD     
Sbjct: 349 KFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPD----- 403

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y  +++GL K G L +A +L + +  +   P+   Y++ I +LC   ++++A  ++
Sbjct: 404 -VVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMY 462

Query: 186 LDMEVKGVAPN-CVIFTTLMPSFI---RKNETSKVIELLRSMDKR 226
             MEV     N C     L+ +     R +   +++E+      R
Sbjct: 463 HGMEVTVAGDNICRALAGLVAALCDAERTDSARRIVEVASERGHR 507



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 42/266 (15%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF------------- 61
           + +T  TI+ GLCK   +D A +   +M+   + PN VTY++L+HGF             
Sbjct: 192 DVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFF 251

Query: 62  -----------------------CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                                  C A   + A     E+   G+  DVVT++++++   +
Sbjct: 252 EEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFAR 311

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             + D +  LL+ M + GV+PD      +V Y  LI+ LCK  K ++A  L + +  AG 
Sbjct: 312 AGQFDASLELLEDMRRNGVKPD------VVTYSTLINVLCKERKFQDAFRLLELMEAAGS 365

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            PNVVTYN  +  LC   +MD+ H ++  M     +P+ V ++ +M    +       ++
Sbjct: 366 PPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVK 425

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           L   +      P A+  S+++  L +
Sbjct: 426 LFELIKSSREGPDAAAYSMVITSLCR 451



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV  K ++  +  +   L +     +   LF  +    +     TY  ++ G C A  
Sbjct: 12  EAGV--KVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGM 69

Query: 67  GNEAEYLFIEMMDRGLQSDVV-TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
            N+A  L  E+   G+ +  +  +N I+  LC+  ++ +A ++L+ M++  + P      
Sbjct: 70  ANQALELVREL--SGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVP------ 121

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           N+  Y  L++GLC+  K K ARE+ Q + R G  PN +TY   I  L    ++D+A  + 
Sbjct: 122 NVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVM 181

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           ++     +  + +  TT++    + +     ++ +  M +  V P
Sbjct: 182 IEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRP 226


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           VTYNT+IDG CK G +D A ++  +MK++++ PN++T+NSL+ G C      EA  L  E
Sbjct: 247 VTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKE 306

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   G   D  T++++ D L +    + A  L +   + G+R      IN      L++G
Sbjct: 307 MEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIR------INNYTGSILLNG 360

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LCK GK++ A E+ +  T  GL+ + V YN  ++  C    M+KA      ME  G+ PN
Sbjct: 361 LCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPN 420

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            + F +L+  F    E  K  E ++ M ++ V P     + ++D
Sbjct: 421 SITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLID 464



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 127/242 (52%), Gaps = 8/242 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG+  +PN++T+N++ID  C    +DKA+E   +M ++ + P+V TYN+LI G+      
Sbjct: 415 FGL--RPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTF 472

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +    +  +M + G++ +VV++  +++ LCK+ K+ EA  +L  MI  GV P+A      
Sbjct: 473 DRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNA------ 526

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  LIDG C +GK+K+A      + R+ + P +VTYN+ I  LC   ++ +A D    
Sbjct: 527 QVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQ 586

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           +   G +P+ + + +L+  +      SK + L  +M    + P       ++    K  I
Sbjct: 587 ITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGI 646

Query: 248 SL 249
            L
Sbjct: 647 EL 648



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T + +++GLCK+G V+KA+E+  +  +  +  + V YN+ ++G+C   D N+A  L 
Sbjct: 350 NNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKA-ILT 408

Query: 75  IEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           IE M+  GL+ + +TFN ++D+ C  ++MD+A   +  M + GV P      ++  Y  L
Sbjct: 409 IERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTP------SVETYNTL 462

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K+       ++ + +   G+ PNVV+Y   I+ LC D ++ +A  +  DM  +GV
Sbjct: 463 IDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGV 522

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN  ++  L+       +    +     M +  + P     ++++D L K
Sbjct: 523 LPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCK 573



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 7/217 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYNT+IDG  K    D+  ++  QM++  + PNVV+Y SLI+  C      EAE +
Sbjct: 454 PSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIV 513

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+ RG+  +   +N+++D  C   K+ +A R  D M++  + P       +V Y  L
Sbjct: 514 LRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISP------TLVTYNVL 567

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGLCK GKL  A +    +T +G  P+V+TYN  I    N   + K   L+  M+  G+
Sbjct: 568 IDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGI 627

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P    +  L+ S   K     V +L   M + N++P
Sbjct: 628 KPTVRTYHPLI-SGCSKEGIELVEKLYNEMLQMNLLP 663



 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 9/224 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV  KPN V+Y ++I+ LCK+G + +A+ +   M    + PN   YN LI G C    
Sbjct: 484 EIGV--KPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGK 541

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A   F EMM   +   +VT+NV++D LCK  K+ EA   L  +   G  PD      
Sbjct: 542 VKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPD------ 595

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           ++ Y  LI G    G +     L +++   G+ P V TY+  I   C+ E ++    L+ 
Sbjct: 596 VITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG-CSKEGIELVEKLYN 654

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +M    + P+ V++  ++  +     T K   L + M  + + P
Sbjct: 655 EMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHP 698



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 11/223 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE-- 71
           P  VTYN +IDGLCK+G + +A++   Q+     +P+V+TYNSLI G  YAN GN ++  
Sbjct: 559 PTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISG--YANAGNVSKCL 616

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+  M + G++  V T++ ++   C    ++   +L + M+Q  + PD       V Y 
Sbjct: 617 GLYETMKNLGIKPTVRTYHPLISG-CSKEGIELVEKLYNEMLQMNLLPDR------VVYN 669

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I    +IG  + A  L Q +   G+ P+ +TYN  I     + ++    DL  +M+ K
Sbjct: 670 AMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAK 729

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
            +AP    +  L+       + S      R M + N +P ASI
Sbjct: 730 ELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASI 772



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +T  Y   I    K   +    E    M+   + PNV  YN LI G C      +AE 
Sbjct: 173 RTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEK 232

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM +  L   +VT+N ++D  CK  ++D A ++ + M +  V P      NI+ +  
Sbjct: 233 MFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAP------NIITFNS 286

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLCK+ K+K AR L + +   G MP+  TY+I    L   +  + A +L+     KG
Sbjct: 287 LLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKG 346

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +  N    + L+    ++ +  K  E+L+   +  ++    I +  V+
Sbjct: 347 IRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVN 394



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 102/215 (47%), Gaps = 14/215 (6%)

Query: 34  KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
           K  +LF+++++     +   Y   I       +          M  RG++ +V  +NV++
Sbjct: 159 KVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLI 218

Query: 94  DELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN----IVAYGCLIDGLCKIGKLKNAREL 149
             LC+ +++ +A ++ D M          C IN    IV Y  LIDG CK+G+L  A ++
Sbjct: 219 GGLCREKRIRDAEKMFDEM----------CNINLVGSIVTYNTLIDGYCKVGELDAAFKM 268

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            + +    + PN++T+N  +  LC   +M +A  L  +MEV G  P+   ++ L    +R
Sbjct: 269 RERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLR 328

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++ +  +EL     ++ +       SI+++ L K
Sbjct: 329 CDDGNGAMELYEQATEKGIRINNYTGSILLNGLCK 363


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 11/250 (4%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           VVCKPN V YN +ID   K G    A  +F +M ++ ++P+ +T+N+LI     AN   E
Sbjct: 183 VVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEE 242

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIV 128
            + +F EM +RG+  D VT+N ++   C+  +M     L++ M +  G+ P      +++
Sbjct: 243 CDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEP------SVI 296

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN--ITIHALCNDEQMDKAHDLFL 186
            Y  +IDG  K+G    A  L Q +    + P+ + YN  + IHA   +   D+AH +  
Sbjct: 297 TYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGN--FDEAHSIRR 354

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            ME  G A + V +  L+ S+ ++ +  + + LL  M +R   P     S ++D   K+ 
Sbjct: 355 AMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHG 414

Query: 247 ISLNSIPQFN 256
              +++  F 
Sbjct: 415 FHRDAMALFQ 424



 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 21/224 (9%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTYN ++D   K+G   +A  L  +MK    +PN++TY++LI  +C      +A  LF
Sbjct: 364 DIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALF 423

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            ++   GLQ DVV ++ ++D  CKN   DEA  LL+ M   G+RP      N++ Y  L+
Sbjct: 424 QDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRP------NVITYNSLL 477

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVV-----TYNITIHALCNDEQMD----KAHDLF 185
           D   +  +    R+    L R  L+P V      +      +L + +Q       A  +F
Sbjct: 478 DAYGR--QCLMVRKTFPKL-RFFLLPRVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVF 534

Query: 186 LDMEVKGVAPNCVIFTTLM---PSFIRKNETSKVIELLRSMDKR 226
            +M   GV PN V F++++          + S ++E +R  D R
Sbjct: 535 REMAKNGVKPNVVTFSSILNACSHCASVEDASNLLEAMRVFDGR 578



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 18/188 (9%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
             PN +TY+ +ID  CK GF   A  LF  +K   + P+VV Y++L+ G C     +EA 
Sbjct: 396 ASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEAL 455

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKN----RKMDEATRL-----LDLMIQGGVRPDAF 122
            L  EM D G++ +V+T+N ++D   +     RK     R      + ++++  ++ D  
Sbjct: 456 ALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQ- 514

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
                     L+D   K   +  A  + + + + G+ PNVVT++  ++A  +   ++ A 
Sbjct: 515 --------QSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDAS 566

Query: 183 DLFLDMEV 190
           +L   M V
Sbjct: 567 NLLEAMRV 574


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 107/191 (56%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK+G VD A E++ +M  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 245 PNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +GL+ D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 305 IDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGH 418

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 419 VPSVVTYNVLM 429



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q D  T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVTFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +A+DL  +M +KG+ P+ +
Sbjct: 259 KKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKI 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M + N+    + Y +++S
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 360



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 209 QPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++  M+ + L  D++T+N ++  LCK   + +A  L+D M+  G++PD       + Y  
Sbjct: 269 IYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDK------ITYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K   LL+ M +   +P
Sbjct: 383 LKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVP 420



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+  TY+ LI+G C  +  ++A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CK  ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPD------LITYNT 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   +   GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 348 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 400



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 90/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+  TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +K      +E+ + M  ++++P
Sbjct: 243 LVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLP 280



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+T TY  II+  CK+G V K   L  +M+     P+VVTYN L++G
Sbjct: 384 KPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 12/204 (5%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRK-MDEATRLLD 110
           +Y ++IH  C     +EA+ L   ++ R G  S    F  I++     R  +   + L+ 
Sbjct: 21  SYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 80

Query: 111 LMIQGGVRPDAF-C-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMP 160
             ++ G   DA  C       ++ +    C  +++ L K+   K      + +   G   
Sbjct: 81  AYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 140

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++  +NI +H  C D  +  A  +F  +   G+ P+ V + TLM  +IR  +  +   L 
Sbjct: 141 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 200

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
            +M    V P     S++++ L K
Sbjct: 201 SAMLASGVQPDXYTYSVLINGLCK 224


>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 511

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 7/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP T T N +I GLC+ G +D+A +L   ++     P+V+TYN+LIHG C  N+ + A  
Sbjct: 174 KPVTYTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARS 233

Query: 73  LFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           L  E+   G    DVV++ +I+   CK RKM+E + L D MI  G  P+ F       + 
Sbjct: 234 LLREVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTF------TFN 287

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG  K+G + +A  L   +   G +P+V T+   I+      Q+ +A D++  M  K
Sbjct: 288 ALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEK 347

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +  +   ++ L+      N   K  ++LR +++ +++P   I + ++D
Sbjct: 348 NIGASLYTYSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVID 396



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 107/248 (43%), Gaps = 32/248 (12%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYA 64
           R FG  C P+ +TYNT+I GLC    VD+A+ L  ++  +    P+VV+Y  +I G+C  
Sbjct: 204 RSFG--CLPDVITYNTLIHGLCLINEVDRARSLLREVCLNGEFAPDVVSYTMIISGYCKL 261

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC- 123
               E   LF EM++ G   +  TFN ++D   K   M  A  L   M+  G  PD    
Sbjct: 262 RKMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATF 321

Query: 124 ------------------------EINIVA----YGCLIDGLCKIGKLKNARELSQSLTR 155
                                   E NI A    Y  L+ GLC   +L  AR++ + L  
Sbjct: 322 TSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSVLVSGLCNNNRLHKARDILRLLNE 381

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
           + ++P    YN  I   C    +D+A+ +  +MEV    P+ + FT L+     K    +
Sbjct: 382 SDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPE 441

Query: 216 VIELLRSM 223
            I     M
Sbjct: 442 AIGFFDKM 449



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 7/232 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V YN + + L ++  V  A  LF ++      P   T N LI G C   + +EA  L 
Sbjct: 141 NAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILIRGLCRVGEIDEAFKLL 200

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCL 133
            ++   G   DV+T+N ++  LC   ++D A  LL ++ + G   PD      +V+Y  +
Sbjct: 201 KDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREVCLNGEFAPD------VVSYTMI 254

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK+ K++    L   +  +G  PN  T+N  I        M  A  L+  M V+G 
Sbjct: 255 ISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGC 314

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            P+   FT+L+    R  +  + +++   M+++N+       S++V  L  N
Sbjct: 315 LPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSVLVSGLCNN 366



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 8/211 (3%)

Query: 30  GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89
           G +D ++EL   ++  N+  N V YN L +     N   +A  LF E++    +    T 
Sbjct: 121 GRLDVSRELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTV 180

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149
           N+++  LC+  ++DEA +LL  +   G  PD      ++ Y  LI GLC I ++  AR L
Sbjct: 181 NILIRGLCRVGEIDEAFKLLKDLRSFGCLPD------VITYNTLIHGLCLINEVDRARSL 234

Query: 150 SQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
            + +   G   P+VV+Y + I   C   +M++   LF +M   G APN   F  L+  F 
Sbjct: 235 LREVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFG 294

Query: 209 RKNETSKVIELLRSMDKRNVMP-YASILSII 238
           +  + +  + L   M  +  +P  A+  S+I
Sbjct: 295 KLGDMASALALYSKMLVQGCLPDVATFTSLI 325



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 9/210 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNT T+N +IDG  K G +  A  L+ +M  +   P+V T+ SLI+G       ++A  +
Sbjct: 281 PNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDM 340

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M ++ + + + T++V++  LC N ++ +A  +L L+ +  + P  F       Y  +
Sbjct: 341 WHKMNEKNIGASLYTYSVLVSGLCNNNRLHKARDILRLLNESDIVPQPF------IYNPV 394

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G +  A ++   +      P+ +T+ I I   C   +M +A   F  M   G 
Sbjct: 395 IDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGFFDKMLAVGC 454

Query: 194 APNCVIFTTLMPSFIRK---NETSKVIELL 220
           AP+ +    L    ++     E ++V E+L
Sbjct: 455 APDEITVNNLRSCLLKAGMPGEAARVKEVL 484



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  T+ ++I+G  +   V +A +++ +M ++NI  ++ TY+ L+ G C  N  ++A 
Sbjct: 314 CLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSVLVSGLCNNNRLHKAR 373

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   + +  +      +N ++D  CK+  +DEA +++  M     +PD       + + 
Sbjct: 374 DILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDK------LTFT 427

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166
            LI G C  G++  A      +   G  P+ +T N
Sbjct: 428 ILIIGHCMKGRMPEAIGFFDKMLAVGCAPDEITVN 462



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    YN +IDG CK G VD+A ++  +M+     P+ +T+  LI G C      EA   
Sbjct: 386 PQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGF 445

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
           F +M+  G   D +T N +   L K     EA R+ +++ Q
Sbjct: 446 FDKMLAVGCAPDEITVNNLRSCLLKAGMPGEAARVKEVLAQ 486



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 12/181 (6%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           +++ + +TY+ L+   C +N  + A+ ++  M   G   D      ++       ++D +
Sbjct: 67  HMSHSYLTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVSSYAIVGRLDVS 126

Query: 106 TRLLDLMIQGGVRPDAFCE---INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
             LL          D  C    +N V Y  L + L +  K+ +A  L + L R    P  
Sbjct: 127 RELL---------ADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVT 177

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
            T NI I  LC   ++D+A  L  D+   G  P+ + + TL+      NE  +   LLR 
Sbjct: 178 YTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLRE 237

Query: 223 M 223
           +
Sbjct: 238 V 238


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 11/250 (4%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           VVCKPN V YN +ID   K G    A  +F +M ++ ++P+ +T+N+LI     AN   E
Sbjct: 184 VVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEE 243

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIV 128
            + +F EM +RG+  D VT+N ++   C+  +M     L++ M +  G+ P      +++
Sbjct: 244 CDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEP------SVI 297

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN--ITIHALCNDEQMDKAHDLFL 186
            Y  +IDG  K+G    A  L Q +    + P+ + YN  + IHA   +   D+AH +  
Sbjct: 298 TYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGN--FDEAHSIRR 355

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            ME  G A + V +  L+ S+ ++ +  + + LL  M +R   P     S ++D   K+ 
Sbjct: 356 AMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHG 415

Query: 247 ISLNSIPQFN 256
              +++  F 
Sbjct: 416 FHRDAMALFQ 425



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 25/226 (11%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTYN ++D   K+G   +A  L  +MK    +PN++TY++LI  +C      +A  LF
Sbjct: 365 DIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALF 424

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            ++   GLQ DVV ++ ++D  CKN   DEA  LL+ M   G+RP      N++ Y  L+
Sbjct: 425 QDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRP------NVITYNSLL 478

Query: 135 DGLCK--IGKLKNARELSQSLTRAGLMPNVV-----TYNITIHALCNDEQMD----KAHD 183
           D   +  +   KN  +L     R  L+P V      + +    +L + +Q       A  
Sbjct: 479 DAYGRQCLMVRKNFPKL-----RFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAAR 533

Query: 184 LFLDMEVKGVAPNCVIFTTLM---PSFIRKNETSKVIELLRSMDKR 226
           +F +M   GV PN V F++++          + S ++E +R  D R
Sbjct: 534 VFREMAKNGVKPNVVTFSSILNACSHCASVEDASSLLEAMRVFDGR 579



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ + YNT++D   + G  D+A  +   M++     ++VTYN+L+  +       EA  
Sbjct: 328 EPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMS 387

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  RG   +++T++ ++D  CK+    +A  L   + + G++PD      +V Y  
Sbjct: 388 LLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPD------VVLYST 441

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171
           L+DG CK G    A  L + +   G+ PNV+TYN  + A
Sbjct: 442 LVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDA 480



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 111/288 (38%), Gaps = 68/288 (23%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF---CYANDGN- 68
           +P+ V Y+T++DG CK G  D+A  L  +M D  I PNV+TYNSL+  +   C     N 
Sbjct: 433 QPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKNF 492

Query: 69  -------------------------------------EAEYLFIEMMDRGLQSDVVTFNV 91
                                                 A  +F EM   G++ +VVTF+ 
Sbjct: 493 PKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSS 552

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           I++       +++A+ LL+ M     R      +  V +G L+    +I   ++A  L  
Sbjct: 553 ILNACSHCASVEDASSLLEAMRVFDGR------VYGVTHGLLMG--FRIRVWRDAETLFN 604

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHD--------------LFLD---MEVKGVA 194
            LT  G    V  YN     L + EQ   A D               FLD   M V    
Sbjct: 605 ELTTLGHNTAVAFYNALTDVLWHFEQAKAAKDRHVWDKAWWHSEQQFFLDLHFMSVGSAQ 664

Query: 195 PNCVIFTTLMPSFI--RKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
               ++   +  F+  R++   K + +L    K + +P  S +   V+
Sbjct: 665 AMLHLWLLYIRKFLCQRRSVLPKYMSILTGWGKHSKVPGESAVKRAVE 712


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN+  YN +I+G C+      A  ++ QM + + +P  +TYN+LIHG C A    EA  
Sbjct: 472 KPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASR 531

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
              EM+++G   DV T+  ++  LC+++K+D A  L + ++  G++ D      +V +  
Sbjct: 532 FTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTD------VVMHNI 585

Query: 133 LIDGLCKIGKLKNARE-LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           LI GLC  GK+  A + LS+   +    PNVVTYN  +         DKA  L++ +   
Sbjct: 586 LIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILEN 645

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+ P+ + + T +      N T + ++LL  M    ++P A   +I+V  ++K
Sbjct: 646 GLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAVIK 698



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 8/236 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG    PN  TYN ++  LC  G +D+A  LF  ++   + P+ +TY++L+ GF   N  
Sbjct: 151 FGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRL 210

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A YL  EM    +Q D V +N ++    +N + ++A R+ + +++     D     N+
Sbjct: 211 DNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVR-----DPGASPNL 265

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  ++DGLCK+G  K A ++ + +      P+++TY   IH LC    +D A  ++ +
Sbjct: 266 ATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSE 325

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK---RNVMPYASILSIIVD 240
           M   G+ P+ VI+ +L+  F       +  +   SM     RNV  Y  +L  + D
Sbjct: 326 MIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFD 381



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 117/214 (54%), Gaps = 7/214 (3%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           +Y+++I GLCK+G +D A +L+ ++  ++  PN   YN+LI+GFC A+  ++A  ++ +M
Sbjct: 442 SYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQM 501

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
            +       +T+N ++  LCK  K  EA+R    M++ G      C +++  YG LI GL
Sbjct: 502 AENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKG------CMLDVNTYGSLIRGL 555

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPN 196
           C+  K+  A  L   +   GL  +VV +NI IH LC+  ++D+A  L  +M+ K    PN
Sbjct: 556 CRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPN 615

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V + TLM  F       K   L  ++ +  ++P
Sbjct: 616 VVTYNTLMDGFYETGCFDKAASLWMAILENGLVP 649



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 5/198 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P T+TYNT+I GLCK     +A     +M ++    +V TY SLI G C     + A 
Sbjct: 506 CSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGAL 565

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+ +++D+GLQ+DVV  N+++  LC   K+DEA++LL  M     +    C  N+V Y 
Sbjct: 566 ALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEM-----KEKNNCCPNVVTYN 620

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+DG  + G    A  L  ++   GL+P++++YN  I  LC+  +  +   L  +M   
Sbjct: 621 TLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLAS 680

Query: 192 GVAPNCVIFTTLMPSFIR 209
           G+ P  + +  L+ + I+
Sbjct: 681 GIIPTAITWNILVRAVIK 698



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 128/282 (45%), Gaps = 44/282 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            PN  TYN ++DGLCK G   +A +++ +M   N  P+++TY ++IHG C + D + A  
Sbjct: 262 SPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAAR 321

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ EM+  GL  DVV +N ++   C   ++ EA +  D M   G+R       N+ +Y  
Sbjct: 322 VYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-------NVTSYNI 374

Query: 133 LIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIH--------------------- 170
           ++ GL   G +  A +L + L +   L P++VT++  IH                     
Sbjct: 375 MLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTS 434

Query: 171 --------------ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
                          LC D ++D A  L+  + +    PN  I+  L+  F + ++ S  
Sbjct: 435 GKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDA 494

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258
           I +   M + +  P     + ++  L K E  L +  +F R+
Sbjct: 495 IRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEA-SRFTRE 535


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F ++    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KM++A  L   MI  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G +  A E  + + R G  P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +    +   + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALIS 354



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  ++ A ELF +M    + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + EM+ +G   D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 263 TYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A    + + +  +  + V Y   I  LC + Q   A  +  +M   G
Sbjct: 317 LIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +     +LL+ M +   +P
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVP 414



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 7/186 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G +D A E + +M  +  +P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGH 412

Query: 194 APNCVI 199
            P CV+
Sbjct: 413 VP-CVV 417



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  N+A  
Sbjct: 168 RPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+  GL  + VTF  ++D  CK   +D A      M++ G  PD      ++ Y  
Sbjct: 228 LFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A      M  + 
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    R+ ++    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKK 394



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E F   ++        T   ++  F           
Sbjct: 63  RSDVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKLVWG 122

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK  +M  A  + D + + G+RP      ++V++  
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +M+ A++LF +M   G
Sbjct: 177 LMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E  + M ++   P
Sbjct: 237 LVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSP 274



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 51/112 (45%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++   K+   K      + +   G   ++  +NI +H  C + +M  A  +F ++   G
Sbjct: 107 VLEHFMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCK 218



 Score = 41.2 bits (95), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P+  TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGHVPCVVT 418


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 125/262 (47%), Gaps = 30/262 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TY  +++GLC+      A+E+F +MK     PN +TY +LI     A + +EA  +
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV----- 128
            IE     L +DV+T   I+  LCK  ++D+A + ++ M Q GVRP+     N+V     
Sbjct: 181 MIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQ 240

Query: 129 -------------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                    AY   +D LCK G L  AR+  + L ++G++P+VV
Sbjct: 241 HGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVV 300

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY++ I+      Q D + +L  DM   GV P+ V ++TL+    ++ +      LL  M
Sbjct: 301 TYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELM 360

Query: 224 DKRNVMPYASILSIIVDLLVKN 245
           +     P     + ++D L K+
Sbjct: 361 EAAGSPPNVVTYNSVMDGLCKS 382



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 112/210 (53%), Gaps = 6/210 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
               Y   +D LCK G++D+A++   +++   + P+VVTY+ LI+ F  A   + +  L 
Sbjct: 263 EAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELL 322

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M   G++ DVVT++ +++ LCK RK  +A RLL+LM   G  P      N+V Y  ++
Sbjct: 323 EDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPP------NVVTYNSVM 376

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DGLCK GK+     + + + ++   P+VVTY+I ++ L     +D A  LF  ++     
Sbjct: 377 DGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREG 436

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           P+   ++ ++ S  R  +  +   +   M+
Sbjct: 437 PDAAAYSMVITSLCRAGKLEEACGMYHGME 466



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 12/239 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+ GVV  P+ VTY+ +I+   + G  D + EL   M+   + P+VVTY++LI+  C   
Sbjct: 291 RQSGVV--PDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKER 348

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  L   M   G   +VVT+N +MD LCK+ KMDE  R+ ++M++    PD     
Sbjct: 349 KFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPD----- 403

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            +V Y  +++GL K G L +A +L + +  +   P+   Y++ I +LC   ++++A  ++
Sbjct: 404 -VVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMY 462

Query: 186 LDMEVKGVAPN-CVIFTTLMPSFI---RKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
             MEV     N C     L+ +     R +   +++E+ R    R      + L+ IV+
Sbjct: 463 HGMEVTVAGDNICRALAGLVAALCDAKRTDSARRIVEVARERGHRVTKSGDTDLAKIVE 521



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 42/266 (15%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF------------- 61
           + +T  TI+ GLCK   +D A +   +M+   + PN VTY++L+HGF             
Sbjct: 192 DVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFF 251

Query: 62  -----------------------CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                                  C A   + A     E+   G+  DVVT++++++   +
Sbjct: 252 EEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFAR 311

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             + D +  LL+ M + GV+PD      +V Y  LI+ LCK  K ++A  L + +  AG 
Sbjct: 312 AGQFDASLELLEDMRRNGVKPD------VVTYSTLINVLCKERKFQDAFRLLELMEAAGS 365

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            PNVVTYN  +  LC   +MD+ H ++  M     +P+ V ++ +M    +       ++
Sbjct: 366 PPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVK 425

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           L   +      P A+  S+++  L +
Sbjct: 426 LFELIKSSREGPDAAAYSMVITSLCR 451



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 9/194 (4%)

Query: 38  LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV-TFNVIMDEL 96
           LF  +    +     TY  ++ G C A   N+A  L  E+   G+ +  V  +N I+  L
Sbjct: 41  LFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVREL--SGVYTPTVFIYNGIITGL 98

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C+  ++ +A ++L+ M++  + P      N+  Y  L++GLC+  K K ARE+ Q + R 
Sbjct: 99  CRASRVMDAYKVLEKMVEESIVP------NVFTYTILLNGLCRSNKTKLAREVFQEMKRN 152

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  PN +TY   I  L    ++D+A  + ++     +  + +  TT++    + +     
Sbjct: 153 GCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDA 212

Query: 217 IELLRSMDKRNVMP 230
           ++ +  M +  V P
Sbjct: 213 LKFMEEMRQMGVRP 226



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 7/153 (4%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           +E   LF  +  RG+     T+ +++D LC     ++A  L+   + G   P  F     
Sbjct: 36  SEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVR-ELSGVYTPTVFI---- 90

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  +I GLC+  ++ +A ++ + +    ++PNV TY I ++ LC   +   A ++F +
Sbjct: 91  --YNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQE 148

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           M+  G  PN + + TL+    R  E  + + ++
Sbjct: 149 MKRNGCKPNPITYGTLIQHLSRAGEIDEALRVM 181


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++    KEG +  A+ +F  +   ++ P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D MI  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M D  + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P    +T ++  F +K +     +LL+ M +   MP
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 MPSVV 417



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +D+   L   M+   + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 102/218 (46%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   K+        T   ++              
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M    K  ++  A  + D + +  +RP      ++V++  
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K+G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M   G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P + TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGYMPSVVT 418


>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
          Length = 709

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 7/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDGNEA 70
           C P+ ++Y T++  LCKE  V +   L  +M+ D  I P+ +TYN LIHG       +EA
Sbjct: 264 CPPDKISYFTVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEA 323

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                E   +  + D V ++ I+   C N +M EA  ++  MI  G RPD      +V Y
Sbjct: 324 LTFLRESEGKRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISKGCRPD------VVTY 377

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++DG C+IG+L  AR++ + + + G  PN VT+   ++ LC   +  +A +L    E 
Sbjct: 378 SAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEE 437

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +   P+ + ++ +M  F R+ +  +  +++  M ++   P A  +++++  L K +
Sbjct: 438 EWWTPSGITYSVIMHGFRREGKLVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQ 493



 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 41/252 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN +I GL K G  D+A     + + +    + V Y++++H FC     +EA+ +
Sbjct: 302 PDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGRMSEAKEI 361

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +G + DVVT++ ++D  C+  ++D+A +++  M + G +P      N V +  L
Sbjct: 362 IGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKP------NTVTHTAL 415

Query: 134 IDGLCKIGKLKNAREL-----------------------------------SQSLTRAGL 158
           ++GLCK+GK   A EL                                      + + G 
Sbjct: 416 LNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVMQMLQKGF 475

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P  V  N+ IHALC +++  +A D     + KG   N V FTT++  F R+ +    + 
Sbjct: 476 FPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALS 535

Query: 219 LLRSMDKRNVMP 230
           LL  M   N  P
Sbjct: 536 LLDDMYLTNRHP 547



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+ VTY+ ++DG C+ G +D+A+++   M      PN VT+ +L++G C     +EA 
Sbjct: 370 CRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAW 429

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +  +       +T++VIM    +  K+ E+  ++  M+Q G  P A  EIN+    
Sbjct: 430 ELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVMQMLQKGFFPTAV-EINL---- 484

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LCK  K   A++  +     G   NVV +   IH       ++ A  L  DM + 
Sbjct: 485 -LIHALCKEQKPARAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDDMYLT 543

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              P+ V +T ++ +  RK +  +   L+  M  R ++P
Sbjct: 544 NRHPDVVTYTVVVDALGRKGKMKEATALVEKMLNRGLLP 582



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 111/258 (43%), Gaps = 30/258 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+    N  ++ L   G VDKA E   +M+   ++P+VVTYN LI G C A    EA 
Sbjct: 194 CAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVEAL 253

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFC------- 123
            +   M+  G   D +++  +M  LCK +++ E   LL+ M    G+ PD          
Sbjct: 254 EMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHG 313

Query: 124 ----------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
                                  ++ V Y  ++   C  G++  A+E+   +   G  P+
Sbjct: 314 LAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISKGCRPD 373

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY+  +   C   ++D+A  +   M   G  PN V  T L+    +  ++S+  ELL 
Sbjct: 374 VVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLN 433

Query: 222 SMDKRNVMPYASILSIIV 239
             ++    P     S+I+
Sbjct: 434 KSEEEWWTPSGITYSVIM 451



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 6/212 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTVT+  +++GLCK G   +A EL  + ++E   P+ +TY+ ++HGF       E+ 
Sbjct: 405 CKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESC 464

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            + ++M+ +G     V  N+++  LCK +K   A   ++     G      C IN+V + 
Sbjct: 465 DVVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKG------CFINVVNFT 518

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G  + G L++A  L   +      P+VVTY + + AL    +M +A  L   M  +
Sbjct: 519 TVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATALVEKMLNR 578

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           G+ P  V + T++  +  K     ++ LL  M
Sbjct: 579 GLLPTPVTYRTVIHRYCEKGAVEDLLNLLDKM 610



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 74  FIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F E M R G+  DVVT+N ++  LC  R++ EA  ++  M+Q G  PD       ++Y  
Sbjct: 220 FAERMRRVGVDPDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDK------ISYFT 273

Query: 133 LIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           ++  LCK  ++     L + +   AG+ P+ +TYN+ IH L      D+A     + E K
Sbjct: 274 VMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGK 333

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
               + V ++ ++ SF      S+  E++  M  +   P     S +VD
Sbjct: 334 RFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVD 382



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 8/163 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N V + T+I G  ++G ++ A  L   M   N +P+VVTY  ++          EA 
Sbjct: 510 CFINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEAT 569

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  +M++RGL    VT+  ++   C+   +++   LLD M+        F      AY 
Sbjct: 570 ALVEKMLNRGLLPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLT----KQGFSS----AYN 621

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            +I+ LC  GKL  A  L   + R+    +  T +I + +  N
Sbjct: 622 QVIEKLCAFGKLSEAYNLLSKVLRSASKRDAQTCHILMDSFLN 664



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
           F  +M    +  K+  A R+L LM + G  PD      I      ++ L   G++  A E
Sbjct: 166 FAHLMLSYSRAGKLRSAMRVLQLMQKDGCAPD------ICICNVAVNVLVVAGRVDKALE 219

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
            ++ + R G+ P+VVTYN  I  LC   ++ +A ++   M   G  P+ + + T+M    
Sbjct: 220 FAERMRRVGVDPDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLC 279

Query: 209 RKNETSKVIELLRSM 223
           ++   ++V  LL  M
Sbjct: 280 KEKRVAEVWNLLERM 294


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+NT+I G+C+   +D    L+ +M D  + P+V TY +LI GFC       A  
Sbjct: 217 QPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVK 276

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM D G+  + V F  ++D  CK   ++    L   M   GV PD      +VAY  
Sbjct: 277 MFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPD------LVAYNA 330

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GLC+   LK A  + + +  AGL P+ VTY   I   C D ++D A D+   M  K 
Sbjct: 331 LVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKE 390

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V+ + V +T L+    +         +LR M +  + P  +  ++++D
Sbjct: 391 VSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVID 438



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 6/235 (2%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V  KP+  TY  +I G C+ G ++ A ++F +M+D  +NPN V + +LI   C   + N 
Sbjct: 249 VGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNA 308

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
              L+ +M  RG+  D+V +N +++ LC+ R +  A  +++ M   G++PD       V 
Sbjct: 309 GMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDK------VT 362

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LIDG CK GKL  A ++ Q +    +  + VTY   I  L    +   A  +  +M 
Sbjct: 363 YTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMM 422

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              + P+   +T ++ +F RK +     +LL+ M  +   P     ++I++ L K
Sbjct: 423 EAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCK 477



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 122/251 (48%), Gaps = 8/251 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           M N  R+ GV   PN V + T+ID  CKEG V+   +L+  M+   + P++V YN+L++G
Sbjct: 277 MFNEMRDTGV--NPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNG 334

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C A +   AE +  EM + GL+ D VT+  ++D  CK+ K+D A  +   M +  V   
Sbjct: 335 LCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEV--- 391

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
               ++ V Y  LI GL K G+  +A  + + +  A L P+  TY + I A C    +  
Sbjct: 392 ---SLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKT 448

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
              L  +M+ KG  P  V +  +M    +  +      LL +M    V P     +I++D
Sbjct: 449 GFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLD 508

Query: 241 LLVKNEISLNS 251
              K+    NS
Sbjct: 509 GQCKHGKVANS 519



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 96/206 (46%), Gaps = 44/206 (21%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY T+IDG CK+G +D A ++  +M ++ ++ + VTY +LI G   A    +AE 
Sbjct: 357 KPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAER 416

Query: 73  LFIEMMDRGLQSD-----------------------------------VVTFNVIMDELC 97
           +  EMM+  L+ D                                   VVT+NVIM+ LC
Sbjct: 417 VLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLC 476

Query: 98  KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           K  +M  A  LL  M+  GV PD       + Y  L+DG CK GK+ N+ EL  S    G
Sbjct: 477 KLGQMKNADMLLHAMLNIGVSPDD------ITYNILLDGQCKHGKVANSEELESS---KG 527

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHD 183
           ++P+   Y   I  L   +     HD
Sbjct: 528 MVPDFAVYTSLISELAKKKPAKNYHD 553



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA   +++++D G+  +   FNV+M +  +  ++  A ++ D M +  V+P       +V
Sbjct: 169 EAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEM-RRSVQP------TVV 221

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            +  LI G+C+   L     L + ++  G+ P+V TY   I   C   +M+ A  +F +M
Sbjct: 222 TFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEM 281

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              GV PN V+FTTL+ +  ++   +  ++L + M  R VMP
Sbjct: 282 RDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMP 323



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 12/181 (6%)

Query: 62  CYANDG--NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
            YA++G   +A  L +  + RG+       + +M  L       EA      ++  G+ P
Sbjct: 128 AYADEGLLPDACSLVLLALRRGISLPAPVCSGLMSRLPST---PEAYTFYLQLLDAGMAP 184

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           +         +  L+    ++G+L +AR++   + R+ + P VVT+N  I  +C    +D
Sbjct: 185 ETRL------FNVLMRDFVRLGELVSARKVFDEMRRS-VQPTVVTFNTLISGMCRARDLD 237

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
               L+ +M   GV P+   +  L+  F R       +++   M    V P A + + ++
Sbjct: 238 AVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI 297

Query: 240 D 240
           D
Sbjct: 298 D 298


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 124/239 (51%), Gaps = 5/239 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+NT++DG CK G + +A E+  +M  ENI P+V+TY  L++G C       A 
Sbjct: 233 CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAF 292

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV--- 128
           YL  E++ +G   DV+ +  ++D LCK+ +++EA +L+  M    +  +    IN+V   
Sbjct: 293 YLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAE-MVSINMVPPL 351

Query: 129 -AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  ++ GL K G +  A  L   L   G +P+VVTYN  I  LC   ++ +A DL  +
Sbjct: 352 FTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADE 411

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           M   G  PN V   +++    R         L+  M ++   P   + + ++D L K++
Sbjct: 412 MASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSD 470



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 12/236 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT+  +I G CK G   +A E    + + ++ P+V  +N LIHG     + ++A 
Sbjct: 58  CSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAV 117

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR--PDAFCEINIVA 129
            LF  M    +  D+ T+N ++  LCK+  +++A  LL+ MI+ G +  PD      IV 
Sbjct: 118 KLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPD------IVT 171

Query: 130 YGCLID-GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           Y  LI+ G+CK G ++ A E+   +  AG  P+V+TYN  IHALC   ++ +A ++   M
Sbjct: 172 YNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM 231

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
                +P+ V F TL+  F +     + +E+L  M + N++P     +I+V+ L +
Sbjct: 232 S---CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCR 284



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 18/235 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN+II  LC  G V +A E+   +K  + +P++VT+N+L+ GFC A     A  +
Sbjct: 203 PDVITYNSIIHALCVAGRVVEAAEI---LKTMSCSPDLVTFNTLLDGFCKAGMLPRALEV 259

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM    +  DV+T+ ++++ LC+  ++  A  LL+ +++ G  PD      ++AY  L
Sbjct: 260 LEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD------VIAYTSL 313

Query: 134 IDGLCKIGKLK---------NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           +DGLCK G+++         +ARE+   +    ++P + TYNI +  L  D  + KA  L
Sbjct: 314 VDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSL 373

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             D+  +G  P+ V + TL+    + N   +  +L   M      P    L  +V
Sbjct: 374 ISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVV 428



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 15/243 (6%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKA---------KELFLQMKDENINPNVVTYNSLIHGFCYA 64
           P+ + Y +++DGLCK G +++A         +E+  +M   N+ P + TYN ++ G    
Sbjct: 305 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKD 364

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++A  L  +++ RG   DVVT+N ++D LCK  ++ EA  L D M   G  P     
Sbjct: 365 GSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFP----- 419

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N V  G ++ GLC++G++ +A  L   ++R    PNVV Y   I  LC  ++MD A  +
Sbjct: 420 -NDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVV 478

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              M  +GVA +   +  L+ S I     ++ + +   M  R  +P  S    + +  + 
Sbjct: 479 LDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMS 538

Query: 245 NEI 247
           N +
Sbjct: 539 NSV 541



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 57/110 (51%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VT  +++ GLC+ G VD A  L ++M  +   PNVV Y SLI G C ++  ++A 
Sbjct: 417 CFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDAC 476

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            +   M  +G+  D   +  ++  +    ++ EA  + D M+  G  PD 
Sbjct: 477 VVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDG 526



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 49/105 (46%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           ++ +Y  L+D L K G      ++ + L  +G  PN+VT+ I I   C   Q  +A +  
Sbjct: 26  DVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFL 85

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             ++   VAP+  IF  L+    +     + ++L  +M+   V P
Sbjct: 86  RALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNP 130



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 43/89 (48%)

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G   +V +YN  +  L       +   ++ D+   G +PN V F  L+    +  + ++ 
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRA 81

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +E LR++D+ +V P   I + ++  L K+
Sbjct: 82  LEFLRALDEFSVAPDVYIFNFLIHGLFKD 110


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+LI+G+    D ++   L   M 
Sbjct: 139 FNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+  DV T  V+++ LCK  KMDEA  L + M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + + R G  P+++TYN  I+ LC    + +A DL ++M +KG+ P+ +
Sbjct: 253 KSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     EL + M + ++    + Y +++S
Sbjct: 313 TYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALIS 354



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 7/186 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +  +P+++TYN+LI+G C   D  +A  L
Sbjct: 239 PNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM  +GL+ D +T+  ++D  CK   ++ A  L   MI+  +R D       VAY  L
Sbjct: 299 IVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P   TY + I+  C    +  A  L  +M+  G 
Sbjct: 353 ISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGH 412

Query: 194 APNCVI 199
            P CV+
Sbjct: 413 VP-CVV 417



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+I+G  + G +DK   L   M    ++P+V T   LI+G C  +  +EA  
Sbjct: 168 RPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D+GL  + VTF  ++D  CK+ ++D A  +   M++ G  PD      ++ Y  
Sbjct: 228 LFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC+ G LK AR+L   ++  GL P+ +TY   I   C +  ++ A +L   M  + 
Sbjct: 282 LIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEES 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++       ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQ 394



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T   +I+GLCKE  +D+A ELF +M D+ + PN VT+ +LI G C +   + A  +
Sbjct: 204 PDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEI 263

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + +M+ +G   D++T+N ++  LC+   + +A  L+  M   G++PD       + Y  L
Sbjct: 264 YKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDK------ITYTTL 317

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G L+ A EL + +    +  + V Y   I  LC + +   A  +  +M   G+
Sbjct: 318 IDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGL 377

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P    +T ++  F ++ +     +LL+ M +   +P
Sbjct: 378 KPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVP 414



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK  ++  A  + D + + G+RP      ++V++  
Sbjct: 123 FYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  ++G L     L  ++  +G+ P+V T  + I+ LC + +MD+A++LF +M  KG
Sbjct: 177 LINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M ++   P
Sbjct: 237 LVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSP 274



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 63/107 (58%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+IDG CKEG ++ A EL  +M +E+I  + V Y +LI G C      +AE 
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEK 367

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           +  EM+  GL+ +  T+ +I++  CK   +  A++LL  M + G  P
Sbjct: 368 MLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVP 414



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P   TY  +I+GFC   D   A  L  E
Sbjct: 347 VAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGHVPCVVT 418



 Score = 40.4 bits (93), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 51/112 (45%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C + ++  A  +F  +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TL+  +IR  +  K   L  +M    V P     +++++ L K
Sbjct: 167 LRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCK 218


>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
          Length = 635

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T   II G CKEG + +A +   +MKD  + PN+V +NSLI GF  A D +    
Sbjct: 280 QPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNE 339

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G++ DV+TF+ IM+       MD+   + D M++  ++PDA        Y  
Sbjct: 340 VLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAH------VYSI 393

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L  G  + G+ + A E+  ++ ++G  PNVV +   I+  C+  +M+ A  +F  M   G
Sbjct: 394 LAKGYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECG 453

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +APN   F TL+  +    +  K  E+L+ M++ NV P  + L ++ +
Sbjct: 454 IAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAE 501



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 9/234 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELF-LQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KP T T+NT+I G    G  +++++L  L  +DEN+ PN+ TYN L+  +C   +  +A 
Sbjct: 174 KPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAW 233

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-DAFCEINIVAY 130
            +  +M+  GLQ D VT+N I     +N +  +A  ++  M    V+P +  C I     
Sbjct: 234 NVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCI----- 288

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I G CK GK+K A +    +   GL PN+V +N  I    +    D  +++   ME 
Sbjct: 289 --IIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEE 346

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            GV P+ + F+T+M ++       K  E+   M K  + P A + SI+    V+
Sbjct: 347 FGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVR 400



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TYN ++   C +  + KA  +  +M    + P+ VTYN++   +    + ++AE 
Sbjct: 210 RPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEG 269

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           + +EM +  +Q +  T  +I+   CK  K+ EA + +  M   G++P      N+V +  
Sbjct: 270 IILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQP------NLVVFNS 323

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G           E+   +   G+ P+V+T++  ++A      MDK  ++F DM    
Sbjct: 324 LIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKAR 383

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+  +++ L   ++R  E  K  E+L +M K    P   + + I++
Sbjct: 384 IQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIIN 431



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 84/202 (41%), Gaps = 30/202 (14%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------- 120
            E + +   +++ G +  +VT+  ++  L   +  D    ++  + + G+ PD       
Sbjct: 89  QEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAV 148

Query: 121 --AFCEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTR-AG 157
             AF E                         +  LI G    G+ + +++L Z +++   
Sbjct: 149 INAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDEN 208

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PN+ TYN+ + A CN   + KA ++   M   G+ P+ V + T+  ++ +  E S+  
Sbjct: 209 VRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAE 268

Query: 218 ELLRSMDKRNVMPYASILSIIV 239
            ++  M   NV P      II+
Sbjct: 269 GIILEMQNSNVQPNERTCCIII 290



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + TII+G C  G ++ A ++F +M +  I PN+ T+ +LI G+  A    ++E +
Sbjct: 421 PNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEV 480

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
              M +  +Q +  T  ++ +         EA R+L 
Sbjct: 481 LQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILS 517



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M+ + +  +  E   +LD +I+GG +P      ++V Y  L+  L       +   +  
Sbjct: 78  LMNIMIEKGRPQEVQSILDSIIEGGHKP------SLVTYTTLLAALTIQKHFDSIHSIIS 131

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G+ P+ + +N  I+A      M +A   F  M+  G  P    F TL+  +    
Sbjct: 132 QVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAG 191

Query: 212 ETSKVIELLRSMDK-RNVMPYASILSIIV 239
           E  +  +LL  M +  NV P     +++V
Sbjct: 192 EPEESQKLLZLMSQDENVRPNLRTYNVLV 220


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 6/210 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +   +    + P+VV++N+LI+G+    D +E   L   M 
Sbjct: 137 FNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMH 196

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 197 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVP------NGVTFTTLIDGHC 250

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC   ++ +AHDL  +M ++G+ P+ +
Sbjct: 251 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKI 310

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +TTL+    ++ +     E  + M + N+
Sbjct: 311 TYTTLIDGCCKEGDMETAFEHQKRMIQENI 340



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+I+G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 166 RPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANE 225

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D+G+  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 226 LFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 279

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G+LK A +L   ++  GL P+ +TY   I   C +  M+ A +    M  + 
Sbjct: 280 LIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQEN 339

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +  + V++T L+    ++  +    ++LR M    + P
Sbjct: 340 IRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKP 377



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 101/184 (54%), Gaps = 6/184 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M D+ + PN VT+ +LI G C     + A  
Sbjct: 201 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAME 260

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK  ++ +A  L+D M   G++PD       + Y  
Sbjct: 261 IYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDK------ITYTT 314

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G ++ A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 315 LIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVG 374

Query: 193 VAPN 196
           + PN
Sbjct: 375 LKPN 378



 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 88/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK   +  A  +L+ + + G+RP      ++V++  
Sbjct: 121 FYKEILECGYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRP------SVVSFNT 174

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M  KG
Sbjct: 175 LINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 234

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 235 MVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 272



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 54  YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113
           +N L+  FC   D   A+ +   +   GL+  VV+FN +++   +   +DE  RL   M 
Sbjct: 137 FNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMH 196

Query: 114 QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173
             GV+PD +       Y  LI+GLCK  K+ +A EL   +   G++PN VT+   I   C
Sbjct: 197 ASGVQPDVY------TYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHC 250

Query: 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233
            + ++D A +++  M  + ++P+ + + TL+    +K E  +  +L+  M    + P   
Sbjct: 251 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKI 310

Query: 234 ILSIIVD 240
             + ++D
Sbjct: 311 TYTTLID 317


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  127 bits (318), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 129/248 (52%), Gaps = 14/248 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C P+ V+Y T++  LC++  + + + L  +M KD  + P+ VTYN+L+H        +EA
Sbjct: 272 CPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEA 331

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                E  +RG Q D V ++ I++  C   +MD A  +++ MI  G  PD      +V Y
Sbjct: 332 LEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPD------VVTY 385

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +++GLCK+GK++ A+++ Q + + G  PN V+Y   ++ LC      +A ++    E 
Sbjct: 386 TAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEE 445

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN---EI 247
               PN + ++ +M    R+ + S+  +++R M  +   P      + ++LL+K+   E 
Sbjct: 446 DWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFP----TPVEINLLIKSLCLEQ 501

Query: 248 SLNSIPQF 255
            +N   +F
Sbjct: 502 KMNEAKKF 509



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 124/266 (46%), Gaps = 41/266 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT++  L K G  D+A E   + ++     + V Y+++++ FC     + A+ +
Sbjct: 310 PDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEI 369

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +G   DVVT+  +++ LCK  K++EA ++L  M + G +P      N V+Y  L
Sbjct: 370 VNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKP------NTVSYTAL 423

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLC+ G    ARE+  +       PN +TY++ +H L  + ++ +A D+  +M  KG 
Sbjct: 424 LNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGF 483

Query: 194 AP-----------------------------------NCVIFTTLMPSFIRKNETSKVIE 218
            P                                   N V FTT++  F + +     + 
Sbjct: 484 FPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALS 543

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           LL  M   N  P A   + I+D L K
Sbjct: 544 LLDDMYLNNKHPDAVTFTAIIDALGK 569



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY  +++GLCK G V++AK++  QM      PN V+Y +L++G C   +  EA 
Sbjct: 378 CSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAR 437

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +     +     + +T++V+M  L +  K+ EA  ++  M+  G  P    EIN+    
Sbjct: 438 EMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPV-EINL---- 492

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  LC   K+  A++  +     G   N V +   IH  C  + +D A  L  DM + 
Sbjct: 493 -LIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLN 551

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
              P+ V FT ++ +  +K    +       M K+ + P
Sbjct: 552 NKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDP 590



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 30/260 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +  NT I  L     ++KA     +M+   I PNVVTYN LI G+C       A  
Sbjct: 203 EPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFC-------- 123
           L  EM  +G   D V++  +M  LC+++++ E   L++ M++   + PD           
Sbjct: 263 LIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHML 322

Query: 124 ---------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                                +++ V Y  +++  C  G++  A+E+   +   G  P+V
Sbjct: 323 SKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDV 382

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTY   ++ LC   ++++A  +   M   G  PN V +T L+    +   + +  E++ +
Sbjct: 383 VTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNT 442

Query: 223 MDKRNVMPYASILSIIVDLL 242
            ++    P A   S+++  L
Sbjct: 443 SEEDWWTPNAITYSVVMHGL 462



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 106/237 (44%), Gaps = 9/237 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+  +P    +  ++    + G +  A ++   M+   + PN++  N+ IH    AN   
Sbjct: 166 GIARRPEAFAH--VMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLE 223

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A      M   G+  +VVT+N ++   C   +++ A  L+  M   G  PD       V
Sbjct: 224 KALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDK------V 277

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           +Y  ++  LC+  ++K  R L + + +   L P+ VTYN  +H L      D+A +   +
Sbjct: 278 SYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRE 337

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            E +G   + V ++ ++ SF  +    +  E++  M  +   P     + +V+ L K
Sbjct: 338 TEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCK 394



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G+      F  +M    +  K+  A ++L +M + GV P      N++     I  L   
Sbjct: 166 GIARRPEAFAHVMVSYSRAGKLRNAMQVLTMMQKAGVEP------NLLICNTAIHVLVMA 219

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
            KL+ A    + +   G+ PNVVTYN  I   C+  Q++ A +L  +M  KG  P+ V +
Sbjct: 220 NKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSY 279

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRN-VMPYASILSIIVDLLVKN 245
            T+M    +     +V  L+  M K N + P     + +V +L K+
Sbjct: 280 YTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKH 325



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 8/130 (6%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N V + T+I G C+   +D A  L   M   N +P+ VT+ ++I          EA 
Sbjct: 518 CAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEAT 577

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
              ++M+ +GL    VT+  ++ + CK  +++E  +LL  M+       + C     AY 
Sbjct: 578 VYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLS-----RSKCR---TAYN 629

Query: 132 CLIDGLCKIG 141
            +I+ LC  G
Sbjct: 630 QVIEKLCNFG 639



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 10/150 (6%)

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV--RPDAFCEINIVAYGCLIDGLCKI 140
           + D + + +++  L K +    A R+L LM++ G+  RP+AF  + +V+Y        + 
Sbjct: 133 RHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHV-MVSYS-------RA 184

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           GKL+NA ++   + +AG+ PN++  N  IH L    +++KA      M++ G+ PN V +
Sbjct: 185 GKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTY 244

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             L+  +    +    +EL+  M  +   P
Sbjct: 245 NCLIKGYCDLYQVEHAMELIAEMPFKGCPP 274


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKE  +  A+ +F  +    + P+VV+YN+L++G+    D +E   L   M 
Sbjct: 127 FNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMH 186

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 187 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP------NGVTFTTLIDGHC 240

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +AHDL  +M +KG+ P+ +
Sbjct: 241 KNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 300

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +T L+    ++ +     E  + M + N+    + Y +++S
Sbjct: 301 TYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 342



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 156 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANE 215

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 216 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPD------LITYNT 269

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+ +TY   I   C +  +D A +    M  + 
Sbjct: 270 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQEN 329

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P A   ++I++   K 
Sbjct: 330 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKK 382



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 95/172 (55%), Gaps = 6/172 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 227 PNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 286

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A      MIQ  +R D       VAY  L
Sbjct: 287 IDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDD------VAYTAL 340

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L 
Sbjct: 341 ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 392



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 111/209 (53%), Gaps = 6/209 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALE 250

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 251 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK------ITYTA 304

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 305 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 364

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           + P+   +T ++  F +K +  K  +LL+
Sbjct: 365 LKPDARTYTMIINEFCKKGDVWKGSKLLK 393



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 90/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK R +  A  + D + + G+RP      ++V+Y  
Sbjct: 111 FYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRP------SVVSYNT 164

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 165 LMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 224

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 225 LVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLP 262



 Score = 45.1 bits (105), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 12/205 (5%)

Query: 53  TYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRK-MDEATRLLD 110
           +Y ++IH  C     +EA+ L   ++ R G  S    F VI++     R  +   + L+ 
Sbjct: 3   SYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAVILETKGTQRSDIYVFSGLIT 62

Query: 111 LMIQGGVRPDAF-C-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMP 160
             ++ G   DA  C       +  +    C  +++ L K+   K      + +  +G   
Sbjct: 63  AYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILESGYPA 122

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++  +NI +H  C +  +  A  +F  +   G+ P+ V + TLM  +IR  +  +   L 
Sbjct: 123 SLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 182

Query: 221 RSMDKRNVMPYASILSIIVDLLVKN 245
            +M    V P     S++++ L K 
Sbjct: 183 SAMHASGVQPDVYTYSVLINGLCKE 207


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T   II G CKEG + +A +   +MKD  + PN+V +NSLI GF  A D +    
Sbjct: 280 QPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNE 339

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M + G++ DV+TF+ IM+       MD+   + D M++  ++PDA        Y  
Sbjct: 340 VLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAH------VYSI 393

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L  G  + G+ + A E+  ++ ++G  PNVV +   I+  C+  +M+ A  +F  M   G
Sbjct: 394 LAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECG 453

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +APN   F TL+  +    +  K  E+L+ M++ NV P  + L ++ +
Sbjct: 454 IAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAE 501



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 9/234 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELF-LQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KP T T+NT+I G    G  +++++L  L  +DEN+ PN+ TYN L+  +C   +  +A 
Sbjct: 174 KPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAW 233

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP-DAFCEINIVAY 130
            +  +M+  GLQ D VT+N I     +N +  +A  ++  M    V+P +  C I     
Sbjct: 234 NVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCI----- 288

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I G CK GK+K A +    +   GL PN+V +N  I    +    D  +++   ME 
Sbjct: 289 --IIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEE 346

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            GV P+ + F+T+M ++       K  E+   M K  + P A + SI+    V+
Sbjct: 347 FGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVR 400



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  TYN ++   C +  + KA  +  +M    + P+ VTYN++   +    + ++AE 
Sbjct: 210 RPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEG 269

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           + +EM +  +Q +  T  +I+   CK  K+ EA + +  M   G++P      N+V +  
Sbjct: 270 IILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQP------NLVVFNS 323

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G           E+   +   G+ P+V+T++  ++A      MDK  ++F DM    
Sbjct: 324 LIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKAR 383

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+  +++ L   ++R  E  K  E+L +M K    P   I + I++
Sbjct: 384 IQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIIN 431



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 30/202 (14%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD------- 120
            E + +   +++ G +  +VT+  ++  L   +  D    ++  + + G+ PD       
Sbjct: 89  QEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAV 148

Query: 121 --AFCEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTR-AG 157
             AF E                         +  LI G    G+ + +++L + +++   
Sbjct: 149 INAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDEN 208

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PN+ TYN+ + A CN + + KA ++   M   G+ P+ V + T+  ++ +  E S+  
Sbjct: 209 VRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAE 268

Query: 218 ELLRSMDKRNVMPYASILSIIV 239
            ++  M   NV P      II+
Sbjct: 269 GIILEMQNSNVQPNERTCCIII 290



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + TII+G C  G ++ A ++F +M +  I PN+ T+ +LI G+  A    ++E +
Sbjct: 421 PNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEV 480

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
              M +  +Q +  T  ++ +         EA R+L 
Sbjct: 481 LQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILS 517



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 11/151 (7%)

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M+ + +  +  E   +LD +I+GG +P      ++V Y  L+  L       +   +  
Sbjct: 78  LMNIMIEKGRPQEVQSILDSIIEGGHKP------SLVTYTTLLAALTIQKHFDSIHSIIS 131

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF---I 208
            +   G+ P+ + +N  I+A      M +A   F  M+  G  P    F TL+  +    
Sbjct: 132 QVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAG 191

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              E+ K++EL+ S D+ NV P     +++V
Sbjct: 192 EPEESQKLLELM-SQDE-NVRPNLRTYNVLV 220


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 128/248 (51%), Gaps = 6/248 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +T  YNT IDG CK G V+KA +L  +MK +   P VVTY S+I G    +  +EA 
Sbjct: 613 CVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAY 672

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF E    GL+ +VV ++ ++D   K  ++DEA  +++ ++Q G+ P      N+  + 
Sbjct: 673 MLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP------NVYTWN 726

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           CL+D L K  ++  A    Q++      PN +TY+I I+ LC   + +KA   + +M+ +
Sbjct: 727 CLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQ 786

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G+ PN + +TT++    +    ++   L         +P ++  + I++ L  +  ++ +
Sbjct: 787 GLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEA 846

Query: 252 IPQFNRQK 259
              F   +
Sbjct: 847 YKIFEETR 854



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ ++Y+ +I GL K GF  +  ELF  MK++    +   YN+ I GFC +   N+A  L
Sbjct: 580 PDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQL 639

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G Q  VVT+  ++D L K  ++DEA  L +     G+      E+N+V Y  L
Sbjct: 640 LEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGL------ELNVVIYSSL 693

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K+G++  A  + + L + GL PNV T+N  + AL   E++++A   F +M+    
Sbjct: 694 IDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKG 753

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN + ++ L+    R  + +K     + M K+ + P     + ++  L K
Sbjct: 754 TPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAK 804



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 125/265 (47%), Gaps = 29/265 (10%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           +C P+ VT+ ++IDGL K+G VD A  L+ QM D +  PN V Y SLI  F       + 
Sbjct: 472 ICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDG 531

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMD------ELCKNRKMDEATR-------------LLDL 111
             +F EM+ RG   D+   N  MD      E  K R + E  +             L+  
Sbjct: 532 HKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHG 591

Query: 112 MIQGGVRPDAF----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +++ G   + +          C ++  AY   IDG CK GK+  A +L + +   G  P 
Sbjct: 592 LVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPT 651

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY   I  L   +++D+A+ LF + +  G+  N VI+++L+  F +     +   ++ 
Sbjct: 652 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIME 711

Query: 222 SMDKRNVMPYASILSIIVDLLVKNE 246
            + ++ + P     + ++D LVK E
Sbjct: 712 ELMQKGLTPNVYTWNCLLDALVKAE 736



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY ++I  LCK   +D+A E+F QM+     P    YN++I G+  A   +EA  L
Sbjct: 301 PDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSL 360

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
                 RG    V+ +N I+  L K  ++ EA R  + M     + DA    N+  Y  L
Sbjct: 361 LERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEM-----KKDA--APNLSTYNVL 413

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK G+++ A ++  ++  AGL PNV+T NI I  LC  +++D+A  +F  M  K  
Sbjct: 414 IDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKIC 473

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+ V F +L+    ++        L   M   + +P A + + ++    K
Sbjct: 474 SPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFK 524



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 119/248 (47%), Gaps = 7/248 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ + YN I+  L K+G + +A   F +MK ++  PN+ TYN LI   C A +   A 
Sbjct: 369 CIPSVIAYNCILTCLGKKGRLGEALRTFEEMK-KDAAPNLSTYNVLIDMLCKAGEVEAAF 427

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +   M + GL  +V+T N+++D LCK +K+DEA  + + M      PD       V + 
Sbjct: 428 KVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDE------VTFC 481

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGL K G++ +A  L + +  +  +PN V Y   I +     + +  H +F +M  +
Sbjct: 482 SLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHR 541

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G +P+  +    M    +  ET K   L   +  R  +P     SI++  LVK   +  +
Sbjct: 542 GCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARET 601

Query: 252 IPQFNRQK 259
              F   K
Sbjct: 602 YELFYAMK 609



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 117/260 (45%), Gaps = 29/260 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  TYN +ID LCK G V+ A ++   MK+  + PNV+T N +I   C A   +EA  +
Sbjct: 405 PNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSI 464

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA---- 129
           F  M  +    D VTF  ++D L K  ++D+A RL + M+     P+A    +++     
Sbjct: 465 FEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFK 524

Query: 130 ----------------YGC---------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                            GC          +D + K G+    R L + +   G +P+V++
Sbjct: 525 CGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMS 584

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y+I IH L       + ++LF  M+ +G   +   + T +  F +  + +K  +LL  M 
Sbjct: 585 YSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMK 644

Query: 225 KRNVMPYASILSIIVDLLVK 244
            +   P       ++D L K
Sbjct: 645 TKGRQPTVVTYGSVIDGLAK 664



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 7/232 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P    Y T+I  L      D    LF QM++     +V  + ++I  F      + A  
Sbjct: 195 RPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALS 254

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM    L +D+V +NV +D   K  K+D A +    +   G+ PD       V Y  
Sbjct: 255 LLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDD------VTYTS 308

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I  LCK  +L  A E+ + + +   +P    YN  I    +  + D+A+ L    + +G
Sbjct: 309 MIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARG 368

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+ + +  ++    +K    + +     M K++  P  S  ++++D+L K
Sbjct: 369 CIPSVIAYNCILTCLGKKGRLGEALRTFEEM-KKDAAPNLSTYNVLIDMLCK 419



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY+ +I+GLC+    +KA   + +M+ + + PN +TY ++I G   A +  EA  L
Sbjct: 755 PNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSL 814

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F      G   D  ++N I++ L  +R+  EA ++ +     G      C I+      L
Sbjct: 815 FERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKG------CNIHTKTCIAL 868

Query: 134 IDGLCKIGKLKNA-------RELSQS 152
           +D L K   L+ A       RE+++S
Sbjct: 869 LDALQKDECLEQAAIVGAVLREIAKS 894



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPNT+TY T+I GL K G + +A  LF + K     P+  +YN++I G  Y+    EA  
Sbjct: 789 KPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYK 848

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106
           +F E   +G      T   ++D L K+  +++A 
Sbjct: 849 IFEETRMKGCNIHTKTCIALLDALQKDECLEQAA 882


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 115/240 (47%), Gaps = 17/240 (7%)

Query: 8   FGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           F + CK       PN   YN +ID LCK    D A  LF +M    + PN VTY  LIH 
Sbjct: 323 FSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHA 382

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C      +A  LF +M D+G++  V  +N +++  CK   +D A  LL  M++ G+ P 
Sbjct: 383 LCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPT 442

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A       +Y  LI GLC+ G L +A EL + +   G+  N  T+   I+  C D++MD+
Sbjct: 443 A------ASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDE 496

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           A  LF  M    V PN V F  ++  +       K  +L   M +  + P    Y S++S
Sbjct: 497 AARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLIS 556



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 41/269 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K     YN++I+G CK+G +D+A+ L   M  E + P   +Y+ LI G C   D + A  
Sbjct: 405 KVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAME 464

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM +RG+  +  TF  +++  CK++KMDEA RL D MI   V P      N V +  
Sbjct: 465 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIP------NEVTFNV 518

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME--- 189
           +I+G C +G ++ A +L   +   GL P+  TY   I  LC    + KA++   D+E   
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 190 --------------------------------VKGVAPNCVIFTTLMPSFIRKNETSKVI 217
                                           V+GV  + V FT ++ + +++++  K  
Sbjct: 579 AVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 638

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            L R M ++ V P     + ++D L K E
Sbjct: 639 VLFREMKEQGVKPDDIFYTCMIDALSKEE 667



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    + +ID L K+  V++A  L  ++ D  + PNV  YN+LI   C     ++A+ L
Sbjct: 301 PSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRL 360

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL+ + VT+ +++  LCK   +++A  L D M   G++      + +  Y  L
Sbjct: 361 FKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIK------VTVYPYNSL 414

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK G L  AR L   + + GL P   +Y+  I  LC +  +  A +L  +M  +G+
Sbjct: 415 INGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGI 474

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A N   FT L+  F +  +  +   L   M   NV+P     +++++
Sbjct: 475 AWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIE 521



 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 13/241 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E GV  KP+ + Y  +ID L KE  + +A   + QM  +  +PN VT+  LI+  C + 
Sbjct: 645 KEQGV--KPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSG 702

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               AE L  EM+   +  +  T+N  +D       M++A  L   M+QG +        
Sbjct: 703 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL-------A 755

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           +IV++  LI GLCK GK++ A +L + +T +G  P+ ++Y+  IH LC    ++KA +L+
Sbjct: 756 SIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELW 815

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVDL 241
            +M  KG+ P+ V +   +       E+ K + +  +M +  V P    Y ++LS I  +
Sbjct: 816 NEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLM 875

Query: 242 L 242
           L
Sbjct: 876 L 876



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V YN ++ GLCK   V +A E+   M +  +  + VTY +L++GFC   +   A  
Sbjct: 230 KASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALR 289

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G        + ++DEL K   ++EA  L   +   G+ P      N+ AY  
Sbjct: 290 ITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVP------NVFAYNA 343

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK  +  +A  L + +   GL PN VTY I IHALC    ++ A  LF  M  KG
Sbjct: 344 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKG 403

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +      + +L+  + ++    +   LL  M K  + P A+  S ++  L +N   L+S 
Sbjct: 404 IKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNG-DLSSA 462

Query: 253 PQFNRQ 258
            + +R+
Sbjct: 463 MELHRE 468



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 109/218 (50%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V++  I+    K+   +K+  LF +MK++ + P+ + Y  +I       +  +A  
Sbjct: 615 KLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + +M+  G   + VT  V+++ LCK+  +  A  L   M+ G V P+ F       Y C
Sbjct: 675 CWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKF------TYNC 728

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +D     G ++ A++L  ++ + G + ++V++NI I  LC   ++ +A DL   +   G
Sbjct: 729 FLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESG 787

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +P+C+ ++T++    +  + +K  EL   M  + + P
Sbjct: 788 FSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKP 825



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 45/260 (17%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T + I+  L K      A++LF +M    ++ +   Y + I  +C + + + A  L 
Sbjct: 162 NQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV 221

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           + M   G+++  V +NV+M  LCKN ++ EA  + ++M+  GV  D       V Y  L+
Sbjct: 222 VRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE------VTYRTLV 275

Query: 135 DGLCKIGKLKNARELSQSLTR-----------------------------------AGLM 159
            G C++ +L+ A  ++  + R                                    G++
Sbjct: 276 YGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMV 335

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           PNV  YN  I  LC +E+ D A  LF +M  +G+ PN V +  L+ +  ++      + L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 220 LRSMD----KRNVMPYASIL 235
              M     K  V PY S++
Sbjct: 396 FDKMRDKGIKVTVYPYNSLI 415



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 113/261 (43%), Gaps = 30/261 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY ++I GLC    V KA E    +++     N  +  +L++G        E  +
Sbjct: 545 KPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYH 604

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---CEI---- 125
           L+ EM  RG++ D+V+F +I+    K    +++  L   M + GV+PD     C I    
Sbjct: 605 LWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALS 664

Query: 126 ----------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                 N V +  LI+ LCK G L +A  L + +    ++PN  
Sbjct: 665 KEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKF 724

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  +     +  M+KA DL   M ++G   + V F  L+    +  +  + I+L+R +
Sbjct: 725 TYNCFLDYFATEGDMEKAKDLHSAM-LQGHLASIVSFNILIKGLCKAGKIQEAIDLMRKI 783

Query: 224 DKRNVMPYASILSIIVDLLVK 244
            +    P     S I+  L K
Sbjct: 784 TESGFSPDCISYSTIIHELCK 804


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 12/234 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G+V   N  TY  +IDG+CK G ++ A+ L  +M+   ++ N + YN+LI G+C    
Sbjct: 64  EKGLVA--NVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGL 121

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            +EA  + + M  +G ++D+ T N I D L K  + +EA R L  MI+ GV P      N
Sbjct: 122 IDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVP------N 175

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V+Y  LID  CK G    A++L Q + +AG  PN VTYN+ I       +M +A++L  
Sbjct: 176 VVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRD 235

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
           +M  KG+ P+   +T+L+       +    +EL   + ++    NV+ Y +I+S
Sbjct: 236 EMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIIS 289



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N + YNT+IDG CK G +D+A ++ + M+ +    ++ T N++  G    N   EA+   
Sbjct: 105 NQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWL 164

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           + M+++G+  +VV++  ++D  CK     EA +L   M + G  P+A      V Y  LI
Sbjct: 165 LTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNA------VTYNVLI 218

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K G++K A EL   +   G+ P++ TY   +H  C   ++D A +LF ++  KG+ 
Sbjct: 219 DGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLP 278

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            N V +T ++    ++  + +  +L   M +  + P   + + +V  L K
Sbjct: 279 LNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHK 328



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 8/166 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GVV  PN V+Y T+ID  CKEG   +AK+LF +MK     PN VTYN LI G      
Sbjct: 169 EKGVV--PNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGR 226

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             EA  L  EM  +G+  D+ T+  ++   C   K+D+A  L + + Q G+       +N
Sbjct: 227 MKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGL------PLN 280

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
           +V Y  +I GL K G+ + A +L   +T AGL P+   Y   + +L
Sbjct: 281 VVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSL 326



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
            TY  +ID     G +D+ + +F +M ++ I  ++  Y  +I+  C   +   A  LF E
Sbjct: 2   ATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDE 61

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           + ++GL ++V T+  ++D +CK  +M+ A  L++ M   G+      ++N + Y  LIDG
Sbjct: 62  LTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGL------DVNQLIYNTLIDG 115

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK G +  A ++   + + G   ++ T N     L    Q ++A    L M  KGV PN
Sbjct: 116 YCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPN 175

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            V +TTL+  + ++    +  +L + M K    P A   ++++D
Sbjct: 176 VVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLID 219



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 6/194 (3%)

Query: 51  VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
           V TY  LI     +   +E E +F EM ++G+++D+  + V+++  CK      A  L D
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170
            + + G+        N+  YG LIDG+CK G+++ A  L   +   GL  N + YN  I 
Sbjct: 61  ELTEKGLVA------NVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLID 114

Query: 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             C    +D+A  + + ME KG   +     T+     + N+  +    L +M ++ V+P
Sbjct: 115 GYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVP 174

Query: 231 YASILSIIVDLLVK 244
                + ++D+  K
Sbjct: 175 NVVSYTTLIDIYCK 188



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY +++ G C  G +D A ELF +++ + +  NVVTY ++I G        EA  L
Sbjct: 244 PDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKL 303

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCK 98
           + EM + GL  D   +  ++  L K
Sbjct: 304 YDEMTEAGLTPDDRVYTSLVSSLHK 328


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 7/186 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E + QM  +   P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +D A  L + M++  +R D       VAY  L
Sbjct: 299 LDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C  E +  A  L  +M+ +G 
Sbjct: 353 ISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGH 412

Query: 194 APNCVI 199
            P CV+
Sbjct: 413 VP-CVV 417



 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+    D ++   L   M 
Sbjct: 139 FNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KM+EA  L + M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GK+ +A E  + +     +P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     EL  +M K ++    + Y +++S
Sbjct: 313 TYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALIS 354



 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  + G +D+  +L   M    + P+V TY+ LI+G C  +  NEA  
Sbjct: 168 RPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEAND 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D+GL  + VTF  ++D  CKN K+D A      M+     PD      ++ Y  
Sbjct: 228 LFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   +   GL P+ +TY   I   C +  +D A +L   M  + 
Sbjct: 282 LIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKES 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +  + V +T L+    ++   +   ++LR M    + P     ++I++   K E
Sbjct: 342 IRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKE 395



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 118/218 (54%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +++A +LF +M D+ + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + +M+ +    D++T+N ++  LCK   + +A  LLD M   G++PD       + Y  
Sbjct: 263 TYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L +A EL +++ +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +     +LL+ M ++  +P
Sbjct: 377 LKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVP 414



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 35/140 (25%)

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV---------------------- 163
           ++  +  L+   CK G++  A+ +  S+T+ GL P+VV                      
Sbjct: 135 SLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLK 194

Query: 164 -------------TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
                        TY++ I+ LC + +M++A+DLF +M  KG+ PN V FTTL+    + 
Sbjct: 195 NAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKN 254

Query: 211 NETSKVIELLRSMDKRNVMP 230
            +    +E  + M  +  +P
Sbjct: 255 GKVDSAMETYKQMLSQCFLP 274



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 12/204 (5%)

Query: 53  TYNSLIHGFCYANDGNEAEYLF-IEMMDRGLQSDVVTFNVIMDELCKNRK-MDEATRLLD 110
           TY ++IH  C      EA+ L  I +  +G  S    F  I++     R  +   + L++
Sbjct: 15  TYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYVFSGLIN 74

Query: 111 LMIQGGVRPDAF-C-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMP 160
             ++ G   DA  C       ++ +    C  +++ L K+   K      + +   G   
Sbjct: 75  AYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPA 134

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
           ++  +NI +H  C + ++  A  +F  +   G+ P+ V F TLM  +IR  +  +  +L 
Sbjct: 135 SLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLK 194

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
            +M    V P     S++++ L K
Sbjct: 195 NAMHASGVQPDVYTYSVLINGLCK 218



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P+  TY  +I+ FC   D   A  L  E
Sbjct: 347 VAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M  +G    VVT
Sbjct: 407 MQRQGHVPCVVT 418


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 7/201 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAE 71
           KPN  T+ T+IDGLCK G+ ++A  LFL++ K  +  PNV TY  +I G+C       AE
Sbjct: 175 KPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAE 234

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L + M+++GL+ +  T+  ++   CK    D A  L++ M Q G  P      NI  Y 
Sbjct: 235 MLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLP------NIYTYN 288

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +IDG CK GK++ A ++ +  T  GL  + +TY I I   C    +  A DLF  M   
Sbjct: 289 AVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVEN 348

Query: 192 GVAPNCVIFTTLMPSFIRKNE 212
           G  P+   +T+L+ ++ ++ +
Sbjct: 349 GCCPDIEAYTSLISTYCQQRQ 369



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 29/244 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPNT TY T+I G CK G  D+A EL  +MK E   PN+ TYN++I GFC      EA  
Sbjct: 246 KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 305

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AFC 123
           +      +GL+ D +T+ +++ E CK   +  A  L D M++ G  PD          +C
Sbjct: 306 VLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYC 365

Query: 124 E----------------INIV----AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           +                I ++     Y  +I G CK+G+   A  + + + + G   + +
Sbjct: 366 QQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSI 425

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   I  LC + ++++A  L+  M  K + P  V   TL   + R+ +TS  + +L  +
Sbjct: 426 TYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRL 485

Query: 224 DKRN 227
           DKR 
Sbjct: 486 DKRQ 489



 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 11/228 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y   IDGLCK  +V +A  +  +M    + PNV T+ +LI G C       A  L
Sbjct: 141 PNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRL 200

Query: 74  FIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F++++     + +V T+ V++   C+  K+  A  LL  M++ G++P      N   Y  
Sbjct: 201 FLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKP------NTNTYTT 254

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK G    A EL   + + G +PN+ TYN  I   C   ++ +A+ +      +G
Sbjct: 255 LIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQG 314

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           +  + + +T L+    ++   +  ++L   M +    P    Y S++S
Sbjct: 315 LKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLIS 362



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TY  +I G C+EG + +A+ L ++M ++ + PN  TY +LI G C     + A  
Sbjct: 211 KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 270

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M   G   ++ T+N ++D  CK  K+ EA ++L +    G++ D       + Y  
Sbjct: 271 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDK------ITYTI 324

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   CK G +  A +L   +   G  P++  Y   I   C   QM+++   F    + G
Sbjct: 325 LITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 384

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           + P    +T+++  + +   ++  + +   M
Sbjct: 385 LLPTKQTYTSMIAGYCKVGRSTLALRVFERM 415



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 7/208 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +  T   ++  LC++G      E F +M +    PNVV Y + I G C      +A ++ 
Sbjct: 107 DNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVL 166

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL-LDLMIQGGVRPDAFCEINIVAYGCL 133
            EM+ RGL+ +V T   ++D LCK    + A RL L L+     +P      N+  Y  +
Sbjct: 167 EEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKP------NVHTYTVM 220

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ GKL  A  L   +   GL PN  TY   I   C     D+A +L   M+ +G 
Sbjct: 221 IGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGF 280

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLR 221
            PN   +  ++  F +K +  +  ++LR
Sbjct: 281 LPNIYTYNAVIDGFCKKGKIQEAYKVLR 308



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 7/233 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +  ++   C+EG V++   L   M     + +  T   ++   C      +    
Sbjct: 71  PMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEF 130

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M++ G   +VV +   +D LCK R + +A  +L+ M+  G++P      N+  +  L
Sbjct: 131 FRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKP------NVYTHTTL 184

Query: 134 IDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           IDGLCKIG  + A  L   L + +   PNV TY + I   C + ++ +A  L + M  +G
Sbjct: 185 IDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQG 244

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + PN   +TTL+    +     +  EL+  M +   +P     + ++D   K 
Sbjct: 245 LKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKK 297



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 6/190 (3%)

Query: 55  NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114
             ++  F  A    EA  + +EM   GL   V T N ++    +      A ++ D M +
Sbjct: 7   RGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTR 66

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            GV P     +N   +G L+   C+ GK++    L  ++ R G   +  T  + + +LC 
Sbjct: 67  AGVSP-----MN-RGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCE 120

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
             +     + F  M   G  PN V +T  +    ++    +   +L  M  R + P    
Sbjct: 121 KGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYT 180

Query: 235 LSIIVDLLVK 244
            + ++D L K
Sbjct: 181 HTTLIDGLCK 190



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+   Y ++I   C++  ++++++ F +     + P   TY S+I G+C       A 
Sbjct: 350 CCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLAL 409

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            +F  M+  G  +D +T+  ++  LCK  +++EA  L + M+   + P   CE+  V
Sbjct: 410 RVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVP---CEVTRV 463



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +++TY  +I GLCKE  +++AK L+  M D+ + P  VT  +L   +C      E  
Sbjct: 420 CFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCR----REKT 475

Query: 72  YLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLL 109
            + + ++DR   +  V T +V++ +L     +D A+  L
Sbjct: 476 SIAVSVLDRLDKRQQVHTVDVVVRKLSALGDVDAASLFL 514


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 104/191 (54%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN LI+G C   D  +A  L
Sbjct: 245 PNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDL 304

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   +B A      MI+  +R D       VAY  L
Sbjct: 305 IXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDD------VAYTAL 358

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+  TY + I+  C    + K   L  +M+  G 
Sbjct: 359 ISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 194 APNCVIFTTLM 204
            P+ V +  LM
Sbjct: 419 VPSVVTYNVLM 429



 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A  +F  +    + P+VV+YN+L++G+    D +E   L   M 
Sbjct: 145 FNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMX 204

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 205 ASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVP------NXVTFTTLIDGHC 258

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +A+DL  +M +KG+ P+ +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKI 318

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++       E    M + N+    + Y +++S
Sbjct: 319 TYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALIS 360



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V+YNT+++G  + G +D+   L   M    + P+V TY+ LI+G C     ++A  
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANE 233

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 234 LFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD------LITYNX 287

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+ +TY   I   C +  +B A +    M  + 
Sbjct: 288 LIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEEN 347

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++       ++LR M    + P A   ++I++   K 
Sbjct: 348 IRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKK 400



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M  + + PN VT+ +LI G C     + A  
Sbjct: 209 QPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAME 268

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+  M   G++PD       + Y  
Sbjct: 269 IYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDK------ITYTT 322

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L  A E    +    +  + V Y   I  LC + +   A  +   M   G
Sbjct: 323 LIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVG 382

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +  K  +LL+ M +   +P
Sbjct: 383 LKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G    +  FN++M   CK+  +  A  + D + + G+RP      ++V+Y  
Sbjct: 129 FYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRP------SVVSYNT 182

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M VKG
Sbjct: 183 LMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKG 242

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  ++++P
Sbjct: 243 LVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP 280



 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           KP+  TY  II+  CK+G V K  +L  +M+ +   P+VVTYN L++G
Sbjct: 384 KPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWG 172

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V + TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCK 224


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 6/238 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+  TYNT+I  LC    +++A+ +F  + +E +  N +TYN+LIH         E  
Sbjct: 449 CKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGL 508

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+  G Q DV+++N ++  LCK   +D +  LL+ M+  G++P+ F      +Y 
Sbjct: 509 RLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNF------SYN 562

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+ LCK GK+++A ELS+ +   GL P++VTYN  I+ LC       A +L   +  +
Sbjct: 563 MLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNE 622

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
            V P+ V +  L+    +         LL       ++P      ++V   V+  ++L
Sbjct: 623 NVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVRQTVNL 680



 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G + + N V  NT+I G   EG + +A EL+  M  +   P+V TY+ L+HG C     
Sbjct: 305 LGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRF 364

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  +  EM ++G   ++VT++ ++   C+N   D+A  +LD M+  G        +N 
Sbjct: 365 GSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGF------SMNS 418

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  +I  LCK GKL  A  L Q +   G  P++ TYN  I+ LCN++ M++A  +F +
Sbjct: 419 QGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRN 478

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +  +GV  N + + TL+ + +R     + + L   M
Sbjct: 479 LIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEM 514



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TY+ ++ GLCK G    A  +  +M+++   PN+VTY++L+H FC     ++A 
Sbjct: 344 CPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDAR 403

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M+ +G   +   +N I+  LCK+ K+D+ATRL+  M   G +PD      I  Y 
Sbjct: 404 AMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPD------ICTYN 457

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  LC    ++ A  + ++L   G++ N +TYN  IHAL  + +  +   L  +M + 
Sbjct: 458 TMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLH 517

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G   + + +  L+ +  ++    + + LL  M  + + P
Sbjct: 518 GCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKP 556



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 99/198 (50%), Gaps = 10/198 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y T+I  L  +G V +A  L  +M       +V T+N L+ G C      EA 
Sbjct: 208 CVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAA 267

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM +G    VVT+  ++  LC+ R+ DEA  +L      G  P    E+N+V   
Sbjct: 268 RLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAML------GRLP----EVNVVMLN 317

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G    GKL  A EL + +   G  P+V TY+I +H LC   +   A  +  +ME K
Sbjct: 318 TVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEK 377

Query: 192 GVAPNCVIFTTLMPSFIR 209
           G APN V ++TL+ SF R
Sbjct: 378 GCAPNIVTYSTLLHSFCR 395



 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 10/219 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +  T+N ++ GLC  G V +A  L  +M  +   P+VVTY  L+ G C     +EA 
Sbjct: 243 CAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEA- 301

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+ R  + +VV  N ++       K+  AT L ++M   G  PD      +  Y 
Sbjct: 302 ---CAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPD------VHTYS 352

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK+G+  +A  +   +   G  PN+VTY+  +H+ C +   D A  +   M  K
Sbjct: 353 ILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAK 412

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G + N   +  ++ +  +  +  +   L++ M  +   P
Sbjct: 413 GFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKP 451



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 10/234 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VTY  ++ GLC+    D+A  +  ++ + N    VV  N++I G         A 
Sbjct: 278 CMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVN----VVMLNTVIRGCLTEGKLARAT 333

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+  M  +G   DV T++++M  LCK  +   A R+LD M + G  P      NIV Y 
Sbjct: 334 ELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAP------NIVTYS 387

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+   C+ G   +AR +   +   G   N   YN  I+ALC D ++D+A  L  +M+ +
Sbjct: 388 TLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQ 447

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  P+   + T++      +   +   + R++ +  V+      + ++  L++N
Sbjct: 448 GCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRN 501



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 38/243 (15%)

Query: 34  KAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           +A  L  QM     ++P+  +YN ++     A+   +A  L+  M+   +     TF V 
Sbjct: 124 RALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVA 183

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAF-----------------------------C 123
              LC+  +  +A  LL  M + G  PDA                              C
Sbjct: 184 ARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGC 243

Query: 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
             ++  +  L+ GLC +G+++ A  L   +   G MP+VVTY   +  LC   Q D+A  
Sbjct: 244 AADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACA 303

Query: 184 LFLDMEVKGVAP--NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
           +       G  P  N V+  T++   + + + ++  EL   M  +   P     SI++  
Sbjct: 304 ML------GRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHG 357

Query: 242 LVK 244
           L K
Sbjct: 358 LCK 360


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 7/235 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+  +IDGLCK   V +AKE+F    +   +P+VV  + L+ GFC     +EA  
Sbjct: 238 RPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWR 297

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F  M +RG   + V+ N++++ LCK +++ +A  + + +++   +PD      +V Y  
Sbjct: 298 IFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPD------VVTYST 351

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF-LDMEVK 191
            +DGLC+  ++  AR++   L   G  P+VV Y   I  LC+  ++D+A  +F +DM   
Sbjct: 352 FMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAA 411

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G APN      L+  F       +  EL +   +R V P     S + +   K E
Sbjct: 412 GCAPNNFTCNVLVNGFGLAGRLDEARELFQRFVERGVQPDCRTFSAMANNTAKTE 466



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NTV+YN +I+  CK   +D+A +LF +MK     P+  TYN+LI G C      EA+  +
Sbjct: 100 NTVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFY 159

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCL 133
             ++  G  +  +T+N+++D  CK  ++ EA  LL +L+ +GGV       +    Y C+
Sbjct: 160 ERLLSSGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGV-------VTSAPYNCI 212

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID L K GK+  A      + + G+ P  VT+ + I  LC   ++ +A ++F      G 
Sbjct: 213 IDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGG 272

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+ VI + LM  F +     +   +   M  R   P     +I+++ L K
Sbjct: 273 SPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCK 323



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 125/263 (47%), Gaps = 33/263 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T TYNT+I GLC+   + +A++ + ++       + +TYN L+ GFC A+   EA 
Sbjct: 132 CAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVDGFCKADRVPEAV 191

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAF 122
            L  E++ RG       +N I+D L K  K+ EA    + M + GVRP         D  
Sbjct: 192 ELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGL 251

Query: 123 CEINIVAYG--------------------CLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C+ N VA                      CL+DG CK G +  A  + + +T  G  PN 
Sbjct: 252 CKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPND 311

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           V+ NI I+ LC  +++ +A ++F ++  +   P+ V ++T M    R +   +  ++L  
Sbjct: 312 VSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCM 371

Query: 223 MDKRNVMP----YASILSIIVDL 241
           +  +   P    Y +++S +  L
Sbjct: 372 LVDKGGTPDVVMYTALISGLCSL 394



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 6/225 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           N  ID LCK   +DKA+  F ++KD     N V+YN LI+ FC     +EA  LF EM  
Sbjct: 70  NITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEAIQLFGEMKA 129

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G      T+N ++  LC+  ++ EA +  + ++  G         + + Y  L+DG CK
Sbjct: 130 PGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGA------SFITYNILVDGFCK 183

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
             ++  A EL   L   G +     YN  I  L    ++ +A   F  ME  GV P  V 
Sbjct: 184 ADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVT 243

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           FT L+    + N  ++  E+  S  +    P   I S ++D   K
Sbjct: 244 FTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCK 288



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 13/176 (7%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V+ N +I+GLCK   + +A+E+F ++      P+VVTY++ + G C A+  ++A 
Sbjct: 307 CTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQAR 366

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL-MIQGGVRPDAF-CEINIVA 129
            +   ++D+G   DVV +  ++  LC   ++DEA ++ ++ M   G  P+ F C +    
Sbjct: 367 QVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNV---- 422

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
              L++G    G+L  AREL Q     G+ P+  T++    A+ N+    +  D++
Sbjct: 423 ---LVNGFGLAGRLDEARELFQRFVERGVQPDCRTFS----AMANNTAKTEGWDIY 471



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 9/236 (3%)

Query: 22  IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81
           I+  LC  G +D+A ELF  +  +      +  + L+     A    E   +   M+DR 
Sbjct: 5   IVLCLCHVGKLDEALELFHSLVSDGCG---LPADLLVRELSKAGRAEECLKVVKLMLDRQ 61

Query: 82  LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141
              +    N+ +D LCK+  +D+A      +       D    +N V+Y  LI+  CK  
Sbjct: 62  QLRERHLVNITIDSLCKSDMIDKAESWFQEL------KDFRGLVNTVSYNILINAFCKTK 115

Query: 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201
           ++  A +L   +   G  P+  TYN  I  LC  E++ +A   +  +   G   + + + 
Sbjct: 116 RIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYN 175

Query: 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            L+  F + +   + +ELL  +  R  +  ++  + I+D L K      +   FNR
Sbjct: 176 ILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNR 231


>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
 gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 117/215 (54%), Gaps = 7/215 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYN+ I G  +EG + +A  LF ++KD ++  N VTY +LI G+C  ND +EA  L
Sbjct: 271 PNIVTYNSFIHGFSREGRMREATRLFREIKD-DVTANHVTYTTLIDGYCRMNDIDEALRL 329

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M  RG    VVT+N I+ +LC++ ++ EA RLL  M    + PD     NI     L
Sbjct: 330 REVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPD-----NITC-NTL 383

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+  CKI  + +A ++ + +  +GL  ++ +Y   IH  C   +++ A +    M  KG 
Sbjct: 384 INAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGF 443

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           +P    ++ L+  F  +N+  ++ +LL   +KR +
Sbjct: 444 SPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGL 478



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 114/251 (45%), Gaps = 41/251 (16%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            N VTY T+IDG C+   +D+A  L   M+    +P VVTYNS++   C      EA  L
Sbjct: 305 ANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRL 364

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  + ++ D +T N +++  CK   M  A ++   MI+ G++ D +      +Y  L
Sbjct: 365 LTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMY------SYKAL 418

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI---------------------HAL 172
           I G CK+ +L+NA+E   S+   G  P   TY+  +                       L
Sbjct: 419 IHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGL 478

Query: 173 CND--------------EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           C D              EQ+D A  LF  ME KG+  + VIFTT+  ++ R  + ++   
Sbjct: 479 CADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASA 538

Query: 219 LLRSMDKRNVM 229
           L   M  R +M
Sbjct: 539 LFDVMYNRRLM 549



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 28/239 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+      +++ L K+   D   ++F +M    +  N+  YN L+H    + D  +AE 
Sbjct: 165 KPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEK 224

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA----------- 121
           L  EM ++G+  D+ T+N ++   CK     EA  + D M + GV P+            
Sbjct: 225 LLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFS 284

Query: 122 -----------FCEI------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                      F EI      N V Y  LIDG C++  +  A  L + +   G  P VVT
Sbjct: 285 REGRMREATRLFREIKDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVT 344

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           YN  +  LC D ++ +A+ L  +M  K + P+ +   TL+ ++ +  +    +++ + M
Sbjct: 345 YNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKM 403



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 111/233 (47%), Gaps = 13/233 (5%)

Query: 9   GVVCKPNTVT--YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           GV   P  V+  ++ ++    K G ++ +  +F Q++   + P++     L++       
Sbjct: 124 GVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRL 183

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            +    +F +M+  G+ +++  +NV++    K+   ++A +LL  M + GV PD F    
Sbjct: 184 TDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIF---- 239

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y  LI   CK      A  +   + R+G+ PN+VTYN  IH    + +M +A  LF 
Sbjct: 240 --TYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFR 297

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           +++   V  N V +TTL+  + R N+  + + L   M+ R   P    Y SIL
Sbjct: 298 EIK-DDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSIL 349



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 41/234 (17%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT-------------------- 53
           P  VTYN+I+  LC++G + +A  L  +M  + I P+ +T                    
Sbjct: 340 PGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKV 399

Query: 54  ---------------YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                          Y +LIHGFC   +   A+     M+++G      T++ ++D    
Sbjct: 400 KKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYN 459

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             K DE T+LL+   + G+  D      +  Y  LI  +CK+ ++  A+ L +S+ + GL
Sbjct: 460 QNKQDEITKLLEEFEKRGLCAD------VALYRGLIRRICKLEQVDYAKVLFESMEKKGL 513

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           + + V +    +A     ++ +A  LF  M  + +  N  ++ ++  S+   N+
Sbjct: 514 VGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRLMVNLKLYKSISASYAGDND 567


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 7/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C P+ V+Y T++  LCKE  +++ K L  +M  + N+ P+ VTYN+LIH        ++A
Sbjct: 336 CPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDA 395

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                E  D+G   D V ++ I+   C+  +MDEA  L+  M   G  PD      +V Y
Sbjct: 396 LAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPD------VVTY 449

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++DG C++G++  A+++ Q + + G  PN V+Y   ++ LC+  +  +A ++    E 
Sbjct: 450 TAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEE 509

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               PN + +  +M    R+ + S+  +L R M ++   P    +++++  L +N+
Sbjct: 510 HWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQ 565



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 9/212 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+I  L K G  D A     + +D+  + + V Y++++H FC     +EA+ L
Sbjct: 374 PDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSL 433

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            I+M  RG   DVVT+  I+D  C+  ++DEA ++L  M + G +P      N V+Y  L
Sbjct: 434 VIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKP------NTVSYTAL 487

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++GLC  GK   ARE+          PN +TY   +H L  + ++ +A DL  +M  KG 
Sbjct: 488 LNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGF 547

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            P  V    L+ S     +  KV+E  + +++
Sbjct: 548 FPTPVEINLLIQSLC---QNQKVVEAKKYLEE 576



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 124/231 (53%), Gaps = 8/231 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTV+Y  +++GLC  G   +A+E+    ++    PN +TY +++HG       +EA 
Sbjct: 477 CKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEAC 536

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+++G     V  N+++  LC+N+K+ EA + L+  +  G      C IN+V + 
Sbjct: 537 DLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKG------CAINVVNFT 590

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G C+IG ++ A  +   +  +G  P+ VTY     AL    ++D+A +L + M  K
Sbjct: 591 TVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSK 650

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G+ P  V + +++  + +      ++ LL  M KR   P+ ++ + +++ L
Sbjct: 651 GLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKRQ--PFRTVYNQVIEKL 699



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 7/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+    NT I  L K G ++KA +   +M+   I P++VTYNSLI G+C  N   +A  
Sbjct: 267 EPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALE 326

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFCEINIVAYG 131
           L   +  +G   D V++  +M  LCK +K++E   L++ M+    + PD       V Y 
Sbjct: 327 LIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQ------VTYN 380

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  L K G   +A    +     G   + V Y+  +H+ C   +MD+A  L +DM  +
Sbjct: 381 TLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSR 440

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+ V +T ++  F R     +  ++L+ M K    P     + +++ L  +  SL +
Sbjct: 441 GCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEA 500

Query: 252 IPQFN 256
               N
Sbjct: 501 REMIN 505



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  + D L K+G +D+A EL ++M  + ++P  VTY S+IH +      ++   L
Sbjct: 619 PDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNL 678

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA-FCEINIVAYGC 132
             +M+ R  Q     +N ++++LC    ++EA +LL  +++   + DA  C +       
Sbjct: 679 LEKMLKR--QPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHV------- 729

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++   K G   +A +++  + R  L P++         L  D ++ +A +L L    +G
Sbjct: 730 LMESYLKKGVAISAYKVACRMFRRNLTPDLKLCEKVSKKLVLDGKLVEADNLMLRFVERG 789

Query: 193 V 193
           +
Sbjct: 790 I 790



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 98/262 (37%), Gaps = 42/262 (16%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V Y T++D L K      A+ +   M    I      +  ++  +  A     A  + 
Sbjct: 199 HPVVYYTMLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKLRNALRVL 258

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M   G++  +   N  +  L K  K+++A + L+ M   G++PD      IV Y  LI
Sbjct: 259 TLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPD------IVTYNSLI 312

Query: 135 DGLCKIGKLKNARELSQSLTRAG------------------------------------L 158
            G C + ++++A EL   L   G                                    L
Sbjct: 313 KGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNL 372

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +P+ VTYN  IH L      D A     + + KG   + V ++ ++ SF +K    +   
Sbjct: 373 IPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKS 432

Query: 219 LLRSMDKRNVMPYASILSIIVD 240
           L+  M  R   P     + IVD
Sbjct: 433 LVIDMYSRGCNPDVVTYTAIVD 454


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYN++IDGLCK   + K++ +  QM D  I PN  TYNSLI+G+  A    E+  +
Sbjct: 97  PDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRV 156

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM   GL   VV  N  +  LC++ ++ EA  + D M+  G +P      NI++Y  L
Sbjct: 157 FKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKP------NIISYSTL 210

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + G    G   N   L   +   G++PN   +NI I+A      MDKA  +F DM+ KG+
Sbjct: 211 LHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGM 270

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P+ V F T++ S  R       +     M    V P  ++   ++ 
Sbjct: 271 IPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQ 317



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 32/259 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY- 72
           P    +++II+ L KEG V + K++   M      PNVVT+NSL+ G+C   +  EA + 
Sbjct: 343 PGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHY 402

Query: 73  -------------------------LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
                                    +F EM++ G    + T+ V++  LC+N   DEA  
Sbjct: 403 LMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANM 462

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           LL+ +    V+ D      I+ +  +I  + K+G+ + A+EL  +++  GL+P V TYN+
Sbjct: 463 LLEKLFAMNVKFD------IITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNL 516

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I  L  +E  ++A +LF+ +E  G AP+  +   ++   ++K E +K    L  +D+ N
Sbjct: 517 MISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENN 576

Query: 228 VMPYASILSIIVDLLVKNE 246
           +   AS +S++  L  + +
Sbjct: 577 LTLEASTISLLASLFSRED 595



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 131/245 (53%), Gaps = 7/245 (2%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKE-GFVDKAKELFLQMKDENINPNVVTYNSLIH 59
             +G+    ++  P +    ++ID L  E    + A  +F ++    + P+V +YN+LI 
Sbjct: 13  WTDGHAPMRLLMLPPSTPTTSLIDVLPAECTGPELALAVFGRLLRTGLGPDVCSYNTLID 72

Query: 60  GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119
           GF    + ++A  LF +M+++ +  DVVT+N ++D LCK ++M ++ R+L+ M+  G+RP
Sbjct: 73  GFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRP 132

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                 N   Y  LI G    G  K +  + + ++ +GL+P VV  N  IHALC   ++ 
Sbjct: 133 ------NNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIK 186

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +A D+F  M +KG  PN + ++TL+  +  +   + +  L+  M  + ++P     +I++
Sbjct: 187 EAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILI 246

Query: 240 DLLVK 244
           +   +
Sbjct: 247 NAYAR 251



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 7/196 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN ++Y+T++ G   EG       L   M  + I PN   +N LI+ +      ++A  
Sbjct: 201 KPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAML 260

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F +M ++G+  D VTF  ++  LC+  ++D+A    + M+  GV P          Y C
Sbjct: 261 IFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSE------AVYRC 314

Query: 133 LIDGLCKIGKLKNAREL-SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           LI G C  G+L  A+EL S+ + +    P V  ++  I+ L  + ++ +  D+   M   
Sbjct: 315 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQT 374

Query: 192 GVAPNCVIFTTLMPSF 207
           G  PN V F +LM  +
Sbjct: 375 GQRPNVVTFNSLMEGY 390



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +  K + +T+N +I  + K G   +AKELF  +    + P V TYN +I         
Sbjct: 468 FAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESY 527

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112
            EA+ LFI +   G   D    N I+  L K  ++ +A+  L ++
Sbjct: 528 EEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSII 572


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TYN ++ G  K G ++ A   F +M +  +NPN V+Y +LI G       + A 
Sbjct: 516 CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIAL 575

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M + G   +V ++N +++ L K  +  EA ++ D M + G+ P      N++ Y 
Sbjct: 576 SLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLP------NVITYT 629

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGLC+ G+ + A ++   + +   +PN+ TY+  I+ LC + + D+A  L  +ME K
Sbjct: 630 TLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERK 689

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G+AP+ V FT+L+  F+          LLR M      P     S+++  L K
Sbjct: 690 GLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQK 742



 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           NT TYN II GLC  G ++KA  LF +M      P VVTYN+LI+G+    + N A  L 
Sbjct: 449 NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLL 508

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M + G + D  T+N ++    K  K++ A+     M++ G+ P      N V+Y  LI
Sbjct: 509 DLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNP------NPVSYTTLI 562

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K GK+  A  L + +   G  PNV +YN  I+ L  + +  +A  +   M  +G+ 
Sbjct: 563 DGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLL 622

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASIL 235
           PN + +TTL+    R   T    ++   M+KR  +P    Y+S++
Sbjct: 623 PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLI 667



 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN+VTY+T+I+GLC EG VD+A ++  +M ++ I P V TY   I   C      EA 
Sbjct: 306 CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAI 365

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   M  RG + +V T+  ++  L +  K++ A  L   M++ G+ P      N V Y 
Sbjct: 366 ELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVP------NTVTYN 419

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+ LC  G+   A ++   +   G + N  TYN  I  LC    ++KA  LF  M   
Sbjct: 420 ALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM 479

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G  P  V + TL+  ++ K   +    LL  M +    P
Sbjct: 480 GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEP 518



 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 29/247 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +T+NT+I+ L K+G V +A+ +  Q+   +++P+V TY SLI G C   + + A  
Sbjct: 237 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 296

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---------- 122
           +F  M+  G   + VT++ +++ LC   ++DEA  +L+ MI+ G+ P  +          
Sbjct: 297 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 356

Query: 123 -------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                              C  N+  Y  LI GL ++GKL+ A  L   + + GL+PN V
Sbjct: 357 AIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTV 416

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TYN  I+ LC   +   A  +F  ME  G   N   +  ++       +  K + L   M
Sbjct: 417 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 476

Query: 224 DKRNVMP 230
            K   +P
Sbjct: 477 LKMGPLP 483



 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 6/211 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           NT++  L K   V+ A+ L+ QM +  I P+++T+N+LI+         EAE +  ++  
Sbjct: 209 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 268

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
             L  DV T+  ++   C+NR +D A  + D M++ G      C+ N V Y  LI+GLC 
Sbjct: 269 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEG------CDPNSVTYSTLINGLCN 322

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G++  A ++ + +   G+ P V TY + I ALC  E  ++A +L   M+ +G  PN   
Sbjct: 323 EGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQT 382

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +T L+    R  +    I L   M K  ++P
Sbjct: 383 YTALISGLSRLGKLEVAIGLYHKMLKEGLVP 413



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 122/284 (42%), Gaps = 53/284 (18%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY T+IDGLC+ G    A ++F  M+     PN+ TY+SLI+G C     +EAE L
Sbjct: 623 PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEIL 682

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL---------------DLMIQG--- 115
             EM  +GL  D VTF  ++D      ++D A  LL                ++++G   
Sbjct: 683 LKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQK 742

Query: 116 ---------GVRPDAF--------------------------CEINIVAYGCLIDGLCKI 140
                     V+ +A                           CE  +  Y  L+ GLC+ 
Sbjct: 743 ECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRK 802

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G+   A +L + +   G  P+   Y   + A C + ++D A  +F  +E KG   +  I+
Sbjct: 803 GRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIY 862

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             L+ +  +  +  +   L  +M ++       + +++VD L+K
Sbjct: 863 RALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLK 906



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 34/252 (13%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  +YN +I+GL KE    +A+++  +M ++ + PNV+TY +LI G C       A 
Sbjct: 586 CNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAF 645

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M  R    ++ T++ ++  LC+  K DEA  LL  M + G+ PD       V + 
Sbjct: 646 KIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDE------VTFT 699

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN-----DEQMDKAHD--- 183
            LIDG   +G++ +A  L + +   G  PN  TY++ +  L       +E++   H+   
Sbjct: 700 SLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVY 759

Query: 184 ----------------LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
                           L   M   G  P    ++TL+    RK    +  +L++ M +R 
Sbjct: 760 SFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERG 819

Query: 228 VMP----YASIL 235
             P    Y S+L
Sbjct: 820 FCPDREIYYSLL 831



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 127/307 (41%), Gaps = 65/307 (21%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TY+++I GLC+EG  D+A+ L  +M+ + + P+ VT+ SLI GF      + A 
Sbjct: 656 CLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAF 715

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE------------------------ATR 107
            L   M+D G + +  T++V++  L K   + E                         + 
Sbjct: 716 LLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSN 775

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP------- 160
           LL  M + G      CE  +  Y  L+ GLC+ G+   A +L + +   G  P       
Sbjct: 776 LLARMSEIG------CEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYS 829

Query: 161 ----------------------------NVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
                                       ++  Y   I ALC   Q+++A  LF +M  K 
Sbjct: 830 LLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE 889

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
              + +++T L+   +++ E    ++LL  M+ +N  P      I+   L +   S+ S 
Sbjct: 890 WNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESE 949

Query: 253 PQFNRQK 259
           P  ++ K
Sbjct: 950 PLADKLK 956



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 30/222 (13%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAK------------------------ELFLQ 41
           R   V CKPN  TY+ ++ GL KE  + + K                         L  +
Sbjct: 720 RMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLAR 779

Query: 42  MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101
           M +    P + TY++L+ G C      EAE L  +M +RG   D   +  ++   CKN +
Sbjct: 780 MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLE 839

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           +D A ++   +   G       ++++  Y  LI  LCK G+++ A+ L  ++       +
Sbjct: 840 VDHALKIFHSIEAKGF------QLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNAD 893

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203
            + + + +  L  + ++D    L   ME K   PN   +  L
Sbjct: 894 EIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 935



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           E+   G    + + N ++ +L K   ++ A  L   M+  G++P      +++ +  LI+
Sbjct: 195 EISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQP------SLLTFNTLIN 248

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195
            L K GK++ A  +   + +  L P+V TY   I   C +  +D A  +F  M  +G  P
Sbjct: 249 ILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDP 308

Query: 196 NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           N V ++TL+     +    + +++L  M ++ + P
Sbjct: 309 NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 343


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  T   I++G CKEG + +A     +MK+  ++PN+V +NSLI GF    D +  +  
Sbjct: 267 PNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEA 326

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M + G++ DV+TF+ IM+       MD+   + + M + G+ PD      I A+  L
Sbjct: 327 LTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPD------IHAFSIL 380

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
             G  + G+ +NA  +  S+ ++G+ PNVV     I   C+  +M+ A  ++  M   G+
Sbjct: 381 AKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGI 440

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +PN   F TL+  +    +  K  ELL+ M+++ V P  S + ++ D
Sbjct: 441 SPNLKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPEKSTIQLVAD 487



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN  TYN ++   C +  +++A  +  +M    I P+VVTYN L   +    +   AE 
Sbjct: 196 KPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAED 255

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L +EM    +  +  T  +I++  CK   M EA R +  M + GV P      N+V +  
Sbjct: 256 LILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHP------NLVIFNS 309

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G   I       E    +   G+ P+V+T++  ++A  +   MDK  ++F DM   G
Sbjct: 310 LIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAG 369

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           + P+   F+ L   ++R  ET     +L SM K  V P   I + I+ 
Sbjct: 370 IEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIIS 417



 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA-E 71
           KP+++ YN +I+   + G V +A ++F +MKD    P   T+N+LI G+  A    E  +
Sbjct: 125 KPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLK 184

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L +  +D  ++ +  T+N+++   C  + ++EA  +L  M+  G++PD      +V Y 
Sbjct: 185 MLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPD------VVTYN 238

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L     + G+   A +L   +    + PN  T  I ++  C +  M +A      M+  
Sbjct: 239 ILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKEL 298

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           GV PN VIF +L+  F+   +T  V E L  M++  V P     S I++
Sbjct: 299 GVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMN 347



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+GV  KP+ +T++TI++     G +DK +E+F  M    I P++  ++ L  G+  A +
Sbjct: 332 EYGV--KPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGE 389

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              AE +   M   G++ +VV    I+   C   KM+ A  + + M + G+ P      N
Sbjct: 390 TENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISP------N 443

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
           +  +  LI G  +  +   A EL Q +   G+ P   T  +   A  N
Sbjct: 444 LKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPEKSTIQLVADAWRN 491



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 30/203 (14%)

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----- 122
           +EA  +F  +++ G +  ++T+  ++  L K +  +    L+  + + G++PD+      
Sbjct: 75  HEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAM 134

Query: 123 ------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG- 157
                                   C+     +  LI G    GK +   ++   ++  G 
Sbjct: 135 INAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGS 194

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           + PN  TYNI + A C+ + +++A ++   M   G+ P+ V +  L  ++ +K ET +  
Sbjct: 195 VKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAE 254

Query: 218 ELLRSMDKRNVMPYASILSIIVD 240
           +L+  M    V P      IIV+
Sbjct: 255 DLILEMQYEKVAPNERTCGIIVN 277


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +  TYN +I GL    FV+KA  L L+M++E I P VVTYN+LI G     +   A+ 
Sbjct: 297 KASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQV 356

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM  +GL  D++T+N +++  CK   + +A  L   + + G+ P       ++ Y  
Sbjct: 357 KFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGP------TVLTYNI 410

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG C++G L+ AR L + +T    +P+V TY I ++  C    +      F +M  KG
Sbjct: 411 LIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKG 470

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+C  + T + + +     +   +L   M  R +       ++++D L K 
Sbjct: 471 LEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKT 523



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 41/262 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC----------- 62
           P  +TYN +IDG C+ G ++ A+ L  +M +E+  P+V TY  L++G C           
Sbjct: 403 PTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIF 462

Query: 63  -------------YANDGNEAEYLFI-----------EMMDRGLQSDVVTFNVIMDELCK 98
                        +A +   +  L I           EMM RG+ SD VT+NV++D LCK
Sbjct: 463 FDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCK 522

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              + +A  L   M+  G+R      ++ V Y CLI   C+ G+L  A+ +   +  +GL
Sbjct: 523 TGSLKDAYVLWMKMVTDGLR------LDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGL 576

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+VVTY I IH  C    +  A+  F  M  +GV PN V +  LM +  R   T    +
Sbjct: 577 SPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQ 636

Query: 219 LLRSMDKRNVMPYASILSIIVD 240
               M +R ++P     ++++D
Sbjct: 637 HFHEMLERGLVPNKYTYTLLID 658



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 124/272 (45%), Gaps = 29/272 (10%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN++I+G CK G + +A  LF  +K   + P V+TYN LI G+C   D   A  L
Sbjct: 368 PDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRL 427

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC-------EIN 126
             EM +     DV T+ ++M+  C  R +       D M+  G+ PD F        E+ 
Sbjct: 428 KEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELT 487

Query: 127 I----------------------VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           I                      V Y  LIDGLCK G LK+A  L   +   GL  + VT
Sbjct: 488 IGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVT 547

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           Y   IHA C   ++ +A ++F  M   G++P+ V +T  + ++ R+          R M 
Sbjct: 548 YTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKML 607

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           +  V P     ++++  L +   + ++   F+
Sbjct: 608 EEGVEPNEVTYNVLMHALCRMGRTESAYQHFH 639



 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   YNT I      G +  A +L  +M    I+ + VTYN LI G C      +A  
Sbjct: 472 EPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYV 531

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+++M+  GL+ D VT+  ++   C+  ++ EA  + D M+  G+ P      ++V Y  
Sbjct: 532 LWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSP------SVVTYTI 585

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I   C+ G L  A    + +   G+ PN VTYN+ +HALC   + + A+  F +M  +G
Sbjct: 586 FIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERG 645

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN   +T L+    ++      I L   M ++ + P
Sbjct: 646 LVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHP 683



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 6/193 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TVTYN +IDGLCK G +  A  L+++M  + +  + VTY  LIH  C      EA+ +F
Sbjct: 509 DTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIF 568

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+  GL   VVT+ + +   C+   +  A      M++ GV P      N V Y  L+
Sbjct: 569 DGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEP------NEVTYNVLM 622

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC++G+ ++A +    +   GL+PN  TY + I   C +     A  L+ +M  KG+ 
Sbjct: 623 HALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIH 682

Query: 195 PNCVIFTTLMPSF 207
           P+      L   F
Sbjct: 683 PDHCTHNALFKGF 695



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 102/228 (44%), Gaps = 42/228 (18%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHG---------- 60
           +P+  TYNT++D  CK G +D+A  L   M+       PN VTYN +I+G          
Sbjct: 226 EPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKA 285

Query: 61  ---------------FCY--------ANDGNE-AEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                          F Y        A D  E A  L +EM + G+   VVT+N ++D L
Sbjct: 286 AQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGL 345

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
            K    + A    D M   G+ PD      ++ Y  LI+G CK G LK A  L   L RA
Sbjct: 346 FKTGNAEAAQVKFDEMRAKGLLPD------LITYNSLINGYCKAGNLKQALCLFGDLKRA 399

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204
           GL P V+TYNI I   C    ++ A  L  +M  +   P+   +T LM
Sbjct: 400 GLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILM 447



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 30/238 (12%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR--GLQSDVVTFN 90
           D  + ++  M    + P++ TYN+L+  FC A   ++A  L  +M  R  G   + VT+N
Sbjct: 211 DDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYN 270

Query: 91  VIMDELCKNRKMDEATRLLDLM-------------IQGGVRPDAFCE------------- 124
           V+++ L +  ++++A +L+D+M             +  G+    F E             
Sbjct: 271 VVINGLARKGELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEG 330

Query: 125 --INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
               +V Y  LIDGL K G  + A+     +   GL+P+++TYN  I+  C    + +A 
Sbjct: 331 IVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQAL 390

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            LF D++  G+ P  + +  L+  + R  +      L   M + + +P     +I+++
Sbjct: 391 CLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMN 448



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 54/108 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            P+ VTY   I   C+ G +  A   F +M +E + PN VTYN L+H  C       A  
Sbjct: 577 SPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQ 636

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            F EM++RGL  +  T+ +++D  CK      A RL   M Q G+ PD
Sbjct: 637 HFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPD 684



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 5/192 (2%)

Query: 39  FLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
           F +M    + P V   N ++     A   ++   ++ +M+  G++  + T+N ++D  CK
Sbjct: 182 FQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCK 241

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
             +MD+A  LL  M        A C  N V Y  +I+GL + G+L+ A +L   + R   
Sbjct: 242 AGRMDQAVALLKDMEARA----AGCLPNDVTYNVVINGLARKGELEKAAQLVD-IMRLSK 296

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
             +  TYN  I  L   + ++KA  L L+ME +G+ P  V + TL+    +         
Sbjct: 297 KASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQV 356

Query: 219 LLRSMDKRNVMP 230
               M  + ++P
Sbjct: 357 KFDEMRAKGLLP 368



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN VTYN ++  LC+ G  + A + F +M +  + PN  TY  LI G C   +   A  
Sbjct: 612 EPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIR 671

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
           L+ EM  +G+  D  T N +     +   M +A + L+ ++ G
Sbjct: 672 LYCEMHQKGIHPDHCTHNALFKGFGEGH-MYDAVQYLENVVLG 713


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  VD+A ELF +M D  + PN VT+ +LI   C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ +G   D++T+N ++  LCK   + +   L+D M   G++PD       + Y  
Sbjct: 263 IYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + + +  +  + V Y   +  LC + + D A  +F +M   G
Sbjct: 317 LIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T ++  F +K +      LL+ M +   +P
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  +EA  
Sbjct: 168 RPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+DRGL  + VTF  ++D  CKN  +D A  +   M+  G  PD      ++ Y  
Sbjct: 228 LFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK  R L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKES 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++       ++ R M    + P     ++I++   K 
Sbjct: 342 IRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKK 394



 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 120/222 (54%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG + +A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  K+DEA  L + M+  G+ P      N V +  LID  C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVP------NGVTFTTLIDVHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G + +A E+ + +   G  P+++TYN  I+ LC    + +   L  +M + G+ P+ +
Sbjct: 253 KNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M K ++    + Y +++S
Sbjct: 313 TYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVS 354



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 7/186 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+ID  CK G VD A E++ QM  +  +P+++TYN+LI+G C   D  +   L
Sbjct: 239 PNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRAL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 IDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDN------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GLC+ G+  +A ++ + +   GL P+  TY + I+  C    +  A  L  +M+  G 
Sbjct: 353 VSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGH 412

Query: 194 APNCVI 199
            P CV+
Sbjct: 413 VP-CVV 417



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T   +++ L K  +     + + ++ +     ++  +N ++H FC   +   A+ +F  +
Sbjct: 103 TCRKVLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAI 162

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
              GL+  VV+FN +M+   +   +DE  RL   M   GV+PD +       Y  LI+GL
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVY------TYSVLINGL 216

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
           CK  K+  A EL   +   GL+PN VT+   I   C +  +D A +++  M  +G +P+ 
Sbjct: 217 CKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDL 276

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257
           + + TL+    +K +  +V  L+  M    + P     + ++D   K E  L +  +F +
Sbjct: 277 ITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCK-EGDLETAFEFRK 335

Query: 258 Q 258
           +
Sbjct: 336 R 336



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V Y  ++ GLC+EG  D A+++F +M    + P+  TY  +I+ FC   D   A  L 
Sbjct: 345 DNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLL 404

Query: 75  IEMMDRGLQSDVVT 88
            EM   G    VVT
Sbjct: 405 KEMQRDGHVPCVVT 418


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---YANDGNEA 70
           P+  T+N +I GLCK G + KA ++   ++   + P+VVTYN++I G+C    A      
Sbjct: 183 PDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHV 242

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
           + L  EM++ G+  + VTFNV+++  CK+     A R+ + M Q G+        ++V Y
Sbjct: 243 DALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGI------AASVVTY 296

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             L+ GLC  GK++   +L   +   GL+PN+ T N  ++  C    M  A      ME 
Sbjct: 297 SALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQ 356

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           K V PN V +T L+  + R ++    + +  +M  + V P A I + ++    +N
Sbjct: 357 KNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRN 411



 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 128/248 (51%), Gaps = 16/248 (6%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDK---AKELFLQMKDENINPNVVTYNSLIHGFC 62
           R +G+   P+ VTYNTIIDG CK G   +      L  +M +  I+PN VT+N L++G+C
Sbjct: 212 RAWGLA--PSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYC 269

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
             ++   A  +F EM  +G+ + VVT++ ++  LC   K++E  +L+D M   G+ P   
Sbjct: 270 KDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVP--- 326

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N+     +++G CK G + +A     S+ +  + PNVVTY I +      ++M  A 
Sbjct: 327 ---NLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDAL 383

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS---IIV 239
            +   M  KGV PN  I+  L+  F R  +   V  LL  M  + V   A I++   +I 
Sbjct: 384 AVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVR--ADIVTYNVLIG 441

Query: 240 DLLVKNEI 247
            L VK E+
Sbjct: 442 ALCVKGEV 449



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 6/210 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+N +++G CK+     A  +F +MK + I  +VVTY++L+ G C      E   L
Sbjct: 256 PNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKL 315

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM D GL  ++ T N +++  CK   M +A   +D M Q  V+P      N+V Y  L
Sbjct: 316 VDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKP------NVVTYTIL 369

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  ++ K+K+A  + ++++  G+ PN   YN  I     +        L  +M +KGV
Sbjct: 370 VDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGV 429

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
             + V +  L+ +   K E  K ++LL  M
Sbjct: 430 RADIVTYNVLIGALCVKGEVRKAVKLLDEM 459



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 12/207 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFL---QMKDENINPNVVTYNSLIHGFCYANDGNE 69
           KPN VTY  ++DG  +   +DK K+       M  + + PN   YN LI GF    D   
Sbjct: 360 KPNVVTYTILVDGYRR---LDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRS 416

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
              L  EM  +G+++D+VT+NV++  LC   ++ +A +LLD M+  G+ P          
Sbjct: 417 VSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLT------ 470

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I+G C+ G +K+A E+   + +     NVVTYN+ I  LC   +M++ ++L  +M 
Sbjct: 471 YNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEML 530

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKV 216
            KG+ PN V + T+    + K  T  V
Sbjct: 531 EKGLVPNGVTYDTIKEGMMEKGYTPDV 557



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 8/225 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           ++ G+V  PN  T N++++G CK+G +  A+     M+ +N+ PNVVTY  L+ G+   +
Sbjct: 320 KDLGLV--PNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLD 377

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  +   M  +G++ +   +N ++    +N      + LLD M   GVR D     
Sbjct: 378 KMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRAD----- 432

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
            IV Y  LI  LC  G+++ A +L   +   GL P  +TYN  I+  C    +  A+++ 
Sbjct: 433 -IVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIR 491

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             ME      N V +   +    R  +  +  ELL  M ++ ++P
Sbjct: 492 TRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVP 536


>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 629

 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 18/230 (7%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V YNT++  LCK G V +A+ L     DE   PN VT+N LI  +C   +  +A  
Sbjct: 210 KPNAVVYNTLLHALCKNGKVGRARSLM----DEIEEPNDVTFNVLIAAYCKEENLVQALV 265

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM-IQGGVRPDAFCEINIVAYG 131
           L  +    G   DVVT   +++ LC   ++ EA  +L+ +  +GG+       +++VAY 
Sbjct: 266 LLEKSFSLGFVPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGL-------VDVVAYN 318

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ G C++GK+K A    + + R G +PNV TYNI I   C+    D A D+F DM+  
Sbjct: 319 TLLRGFCRLGKIKVAHRFLKEMERKGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTD 378

Query: 192 GVAPNCVIFTTLMPSFI---RKNETSKVIELL---RSMDKRNVMPYASIL 235
           G++ N   + TL+       R  E  K++EL+   +      + PY S+L
Sbjct: 379 GISWNFDTYDTLIKGLFFGGRIEEGLKILELMEESKGGSGGRISPYNSVL 428



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 117/278 (42%), Gaps = 31/278 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN  TYN +I G C  G  D A ++F  MK + I+ N  TY++LI G  +     E  
Sbjct: 345 CLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEEGL 404

Query: 72  YLFIEMMDR---GLQSDVVTFNVIMDELCKNRKMDEATRLLDLM-------IQGGVRPDA 121
            + +E+M+    G    +  +N ++  L K    DEA   L  M       +   +R   
Sbjct: 405 KI-LELMEESKGGSGGRISPYNSVLYGLYKKNMWDEALEFLMKMEKLFPRAVDRSLRILG 463

Query: 122 FCE--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           FCE                     NI+ Y CL+ G C+ G L+ A EL   +   G    
Sbjct: 464 FCEKGAVKNAKMVFDQMINEGGTPNILVYDCLVHGFCQEGNLREAFELMNEMVGHGYFLV 523

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
              +N  IH  C   + + A  L  DM  +G  P+   ++ L+ +  RK    K + +  
Sbjct: 524 ASGFNALIHGFCGQGKDESALKLLDDMVGRGCVPDRGTYSPLIDALCRKGNFQKALSIFN 583

Query: 222 SMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
            M ++ + P +S  + ++  L K  I L +   F+  K
Sbjct: 584 QMIEKGITPDSSTWNSLLIRLSKEIIWLENKNVFHVNK 621



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFL-QMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           P+   +N+I+D L K   +D A+E +  QM    +  +  T+  L+ G C  N   +   
Sbjct: 141 PSLKIFNSILDVLVKVD-IDVAREFYRKQMMGSGVQGDDYTFAILMKGLCLTNRIGDGFR 199

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M  RG++ + V +N ++  LCKN K+  A  L+D             E N V +  
Sbjct: 200 LLQVMKSRGVKPNAVVYNTLLHALCKNGKVGRARSLMD----------EIEEPNDVTFNV 249

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   CK   L  A  L +     G +P+VVT    +  LCN  ++ +A ++   +E KG
Sbjct: 250 LIAAYCKEENLVQALVLLEKSFSLGFVPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKG 309

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
              + V + TL+  F R  +       L+ M+++  +P     +I++
Sbjct: 310 GLVDVVAYNTLLRGFCRLGKIKVAHRFLKEMERKGCLPNVETYNILI 356



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 8/186 (4%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           + F +   P+ VT   +++ LC  G V +A E+  +++ +    +VV YN+L+ GFC   
Sbjct: 269 KSFSLGFVPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLG 328

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               A     EM  +G   +V T+N+++   C +   D A  + + M   G+        
Sbjct: 329 KIKVAHRFLKEMERKGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGI------SW 382

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSL--TRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
           N   Y  LI GL   G+++   ++ + +  ++ G    +  YN  ++ L      D+A +
Sbjct: 383 NFDTYDTLIKGLFFGGRIEEGLKILELMEESKGGSGGRISPYNSVLYGLYKKNMWDEALE 442

Query: 184 LFLDME 189
             + ME
Sbjct: 443 FLMKME 448



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           T+  ++ +LC   + D   +LLD M    G  PD   EI +     +I GL +   + + 
Sbjct: 74  TYRALIQKLCAFHRFDTVYQLLDEMPHAIGSPPDE--EIFLT----VIRGLGRARMIPHV 127

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL-DMEVKGVAPNCVIFTTLMP 205
            ++   +++ G  P++  +N  +  L   + +D A + +   M   GV  +   F  LM 
Sbjct: 128 IKVLDLISKFGKNPSLKIFNSILDVLVKVD-IDVAREFYRKQMMGSGVQGDDYTFAILMK 186

Query: 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
                N       LL+ M  R V P A + + ++  L KN
Sbjct: 187 GLCLTNRIGDGFRLLQVMKSRGVKPNAVVYNTLLHALCKN 226


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 117/210 (55%), Gaps = 6/210 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CK+G +  A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +TTL+    ++ +     E  + M + N+
Sbjct: 313 TYTTLIDGXCKEGDLETAFEHRKRMIQENI 342



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 117/218 (53%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A ELF +M D+ + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LC+   + +A  L+D M   G++PD       + Y  
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+ + +T ++  F +K +     +LL+ M +   MP
Sbjct: 377 LKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMP 414



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 102/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MIQ  ++ D       V Y  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDD------VGYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P+ +TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQ 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 MPSVV 417



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M + CK+  +  A  + + + + G+RP      ++V++  
Sbjct: 123 FYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M  KG
Sbjct: 177 LMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 50/112 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C D  +  A  +F  +   G
Sbjct: 107 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +IR  +  +   L  +M    V P     S++++ L K
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCK 218



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P+ +TY  +I+ FC   D      L  E
Sbjct: 347 VGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGQMPSVVT 418


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  126 bits (317), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY T I GLCK G    A  L   +  +N   N   +N++I+G C     +EA  +
Sbjct: 243 PNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEV 302

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM + G+  DV ++++++D  C+  ++D+A+ +   M   G+ P      NI +Y  L
Sbjct: 303 FKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILP------NIYSYSIL 356

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG CK G++  A E+ + +  +G++P+V +Y+I I   C    MD A   + +M     
Sbjct: 357 IDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNF 416

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +P+   + +L+  + +  + +  ++  R M K  + P
Sbjct: 417 SPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWP 453



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 10/233 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y+ +IDG C++G VD+A E+F +M++  I PN+ +Y+ LI GFC     ++A  +
Sbjct: 313 PDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEV 372

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM + G+  DV ++++++D  C+   MD A +  + M      P AF       Y  L
Sbjct: 373 FEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAF------NYCSL 426

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G  K  +  NA +  + + + G+ P+ +  N  +   C     +KA  L    +  GV
Sbjct: 427 IKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGV 486

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVDLL 242
             N   +   +    R +   K ++LL  M KRNV+P    Y++++S     L
Sbjct: 487 HFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRL 539



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 11/232 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN  I  +C+    +KA +L   M   N+ P+VV Y++LI  F    +  +A  LF
Sbjct: 489 NPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLF 548

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           I+M   G+  +V T+ ++++    + KMD A RL   M +  V PD       +AY  L+
Sbjct: 549 IKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQ------IAYTSLV 602

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G C  G++  AR L   ++R G  PNVVTY   I+      + ++AH L+  M+ +GV 
Sbjct: 603 AGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVY 662

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-----NVMPYASILSIIVDL 241
           P+ +++T L+ +F    E ++   L   M +      NV+ Y  +++  + L
Sbjct: 663 PDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKL 714



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 113/220 (51%), Gaps = 8/220 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N   +N +I GLC+ G +D+A E+F +MK+  I P+V +Y+ LI GFC     ++A  +F
Sbjct: 279 NNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVF 338

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM + G+  ++ ++++++D  CK  ++D+A  + + M   G+ PD +      +Y  LI
Sbjct: 339 KEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVY------SYSILI 392

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG C+ G + +A +  + +T     P+   Y   I      +Q   A   F  M+  G+ 
Sbjct: 393 DGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMW 452

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM--PYA 232
           P+ +    ++  + RK + +K + L     +  V   PY+
Sbjct: 453 PDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYS 492



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 7/216 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V Y+T+I    K    +KA  LF++M    I  NV TY  LI+ F      + A  L
Sbjct: 523 PDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRL 582

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M +  +  D + +  ++   C   +M  A  L D M + G  P      N+V Y C 
Sbjct: 583 FKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSP------NVVTYTCF 636

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG- 192
           I+   K+ K   A +L + +   G+ P+ + Y + I A CN  +M++A  LF +M+ +G 
Sbjct: 637 INEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGR 696

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
             PN V++T L+ S+I+ N+  +  +L   M  + +
Sbjct: 697 CTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGL 732



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  TY  +I+    +  +D A  LF  MK+  + P+ + Y SL+ GFC   +   A  LF
Sbjct: 559 NVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALF 618

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM   G   +VVT+   ++E  K  K ++A +L + M + GV PD       + Y  LI
Sbjct: 619 DEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQ------ILYTMLI 672

Query: 135 DGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
              C  G++  A  L   + + G   PNVV Y   I++     + D+A  L+ +M  KG+
Sbjct: 673 AAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGL 732

Query: 194 APNCVIFTTLMPSFIRKNETSKVIEL 219
           +  C    ++  S+  +++  K  +L
Sbjct: 733 SRLCSSEGSVSESWCCRHQVLKTGKL 758



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 116/265 (43%), Gaps = 45/265 (16%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + V ++ +I        ++ A  +F++ KD+ I  N+++ N L+      N  +    LF
Sbjct: 135 SNVVFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLF 194

Query: 75  IEMMDRGLQSDVVTFNVIMDELCK----NRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             ++  G + ++ T+ ++M+  C+    +  +  A+ +L  +   G  P      N+V Y
Sbjct: 195 EVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETP------NVVTY 248

Query: 131 GCLIDGLCKIGKLKNARELSQSLTR----------------------------------- 155
           G  I GLCK+G    A  L Q+L R                                   
Sbjct: 249 GTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKN 308

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
           +G++P+V +Y+I I   C   ++D+A ++F +M   G+ PN   ++ L+  F ++    K
Sbjct: 309 SGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDK 368

Query: 216 VIELLRSMDKRNVMPYASILSIIVD 240
            +E+   M    ++P     SI++D
Sbjct: 369 ALEVFEEMKNSGILPDVYSYSILID 393



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN VTY   I+   K    ++A +L+ +MK+  + P+ + Y  LI  FC   + N AE
Sbjct: 626 CSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAE 685

Query: 72  YLFIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            LF EM   G    +VV +  +++   K  K D+A +L + M   G+      E ++   
Sbjct: 686 ALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGLSRLCSSEGSVSES 745

Query: 131 GCLIDGLCKIGKL 143
            C    + K GKL
Sbjct: 746 WCCRHQVLKTGKL 758


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++    KEG +  A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +    +E  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALIS 354



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  +  GV  +P+  TY+ +I+GLCKE  +D A ELF +M D  + PN VT+ +LI G
Sbjct: 193 LKNAMQASGV--QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C       A  ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD
Sbjct: 251 HCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  + Y  LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   
Sbjct: 311 K------ITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  +  +M   G+ P    +T ++  F +K +     +LL+ M +   +P
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 102/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G V  A E++ QM  ++++P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 VPSVV 417



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +D+   L   M+   + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D GL  + VTF  ++D  CKN ++  A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 85/158 (53%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M    K  ++  A  + D + + G+RP      ++V++  
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K+G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M   G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSP 274



 Score = 44.7 bits (104), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P + TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGYVPSVVT 418



 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 77/180 (42%), Gaps = 10/180 (5%)

Query: 68  NEAEYLFIEMMD-RGLQ-SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR-PDAFCE 124
             A  +F E+++ +G Q SD+  F+ ++    ++  + +A     L  +   R P   C 
Sbjct: 46  GSASAVFAEILETKGTQTSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCR 105

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
                   +++ L K+   K      +     G   ++  +NI +H+   + ++  A  +
Sbjct: 106 K-------VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSV 158

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           F  +   G+ P+ V F TLM  +I+  +  +   L  +M    V P     S++++ L K
Sbjct: 159 FDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCK 218


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 131/246 (53%), Gaps = 6/246 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  +Y+ +I GL K GF  +  +LF +MK++ ++ +V+ YN++I GFC +   ++A  L
Sbjct: 585 PDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQL 644

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GLQ  VVT+  ++D L K  ++DEA  L +     GV      ++N+V Y  L
Sbjct: 645 LEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGV------DLNVVIYSSL 698

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K+G++  A  + + L + GL PN  T+N  + AL   E++D+A   F +M+    
Sbjct: 699 IDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKC 758

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
           +PN + ++ ++       + +K     + M K+ + P     + ++  L K    + +  
Sbjct: 759 SPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARG 818

Query: 254 QFNRQK 259
            F+R K
Sbjct: 819 LFDRFK 824



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +  N+ +D + K G V+K + LF ++K + + P+V +Y+ LIHG   A    E  
Sbjct: 548 CSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETY 607

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM ++GL  DV+ +N ++D  CK+ K+D+A +LL+ M   G++P       +V YG
Sbjct: 608 KLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQP------TVVTYG 661

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++DGL KI +L  A  L +     G+  NVV Y+  I       ++D+A+ +  ++  K
Sbjct: 662 SVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQK 721

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           G+ PN   +  L+ + ++  E  +     ++M      P A   SI+++ L
Sbjct: 722 GLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGL 772



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 131/265 (49%), Gaps = 29/265 (10%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           VC P++ T+ ++IDGL + G VD A  L+ +M D +  PNVV Y SLI  F       + 
Sbjct: 477 VCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDG 536

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--------- 121
             ++ EM+ RG   D++  N  MD + K  ++++   L + +   G+ PD          
Sbjct: 537 HKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHG 596

Query: 122 -------------FCE-------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
                        F E       ++++AY  +IDG CK GK+  A +L + +   GL P 
Sbjct: 597 LVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPT 656

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
           VVTY   +  L   +++D+A+ LF + +  GV  N VI+++L+  F +     +   +L 
Sbjct: 657 VVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILE 716

Query: 222 SMDKRNVMPYASILSIIVDLLVKNE 246
            + ++ + P +   + ++D LVK E
Sbjct: 717 ELMQKGLTPNSYTWNCLLDALVKAE 741



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY T+I  LCK   +D+A ELF ++      P V  YN++I G+  A   +EA  L
Sbjct: 306 PDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSL 365

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
                 +G    V+ +N I+  L +  K++EA R+ D M     R DA    N+  Y  L
Sbjct: 366 LERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM-----RQDA--APNLTTYNIL 418

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID LCK G+L+ A ++  ++  AGL PN++T NI I  LC  +++D+A  +FL ++ K  
Sbjct: 419 IDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVC 478

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +P+   F +L+    R+        L   M   + +P   + + ++    K
Sbjct: 479 SPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFK 529



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 11/250 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ + YN I+  L ++G V++A  +  +M+ ++  PN+ TYN LI   C A +   A 
Sbjct: 374 CIPSVIAYNCILTCLGRKGKVEEALRIHDEMR-QDAAPNLTTYNILIDMLCKAGELEAAL 432

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA--FCEINIVA 129
            +   M + GL  +++T N+++D LCK +K+DEA  +   +      PD+  FC      
Sbjct: 433 KVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCS----- 487

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
              LIDGL + G++ +A  L + +  +  +PNVV Y   I       + +  H ++ +M 
Sbjct: 488 ---LIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMV 544

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
            +G +P+ ++  + M    +  E  K   L   +  + ++P     SI++  LVK   S 
Sbjct: 545 HRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSR 604

Query: 250 NSIPQFNRQK 259
            +   F   K
Sbjct: 605 ETYKLFYEMK 614



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 9/214 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V Y+++IDG  K G +D+A  +  ++  + + PN  T+N L+     A + +EA+  F
Sbjct: 691 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCF 750

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M +     + +T++++++ LC  RK ++A      M + G++P      N + Y  +I
Sbjct: 751 QNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKP------NNITYTTMI 804

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            GL K G +  AR L      +G +P+   YN  I  L +  +   A+ +F +  +KG  
Sbjct: 805 AGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCR 864

Query: 195 PN---CVIFTTLMPSFIRKNETSKVIELLRSMDK 225
            N   CV+    +       + + V  +LR M K
Sbjct: 865 VNSKTCVVLLDALHKADCLEQAAIVGAVLREMAK 898



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 103/234 (44%), Gaps = 11/234 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P    Y T+I  L      D    LF QM++     NV  + +L+  F      + A  
Sbjct: 200 RPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALS 259

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM      +D+V +NV +D   K  K+D A +    M   G+ PD       V Y  
Sbjct: 260 LLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDD------VTYTT 313

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LCK  +L  A EL + L     +P V  YN  I    +  + D+A+ L    + KG
Sbjct: 314 LIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKG 373

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD--KRNVMPYASILSIIVDLLVK 244
             P+ + +  ++    RK    KV E LR  D  +++  P  +  +I++D+L K
Sbjct: 374 CIPSVIAYNCILTCLGRKG---KVEEALRIHDEMRQDAAPNLTTYNILIDMLCK 424



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 6/168 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN+ T+N ++D L K   +D+A+  F  MK+   +PN +TY+ +I+G C     N+A   
Sbjct: 725 PNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVF 784

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM  +GL+ + +T+  ++  L K   + EA  L D     G  PD+ C      Y  +
Sbjct: 785 WQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSAC------YNAM 838

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           I+GL    K  +A  + +     G   N  T  + + AL   + +++A
Sbjct: 839 IEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQA 886



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 15/149 (10%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TY+ +I+GLC     +KA   + +M+ + + PN +TY ++I G   A +  EA 
Sbjct: 758 CSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEAR 817

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            LF      G   D   +N +++ L   N+ MD      +  ++G       C +N    
Sbjct: 818 GLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKG-------CRVNSKTC 870

Query: 131 GCLIDGLCKIGKLKNA-------RELSQS 152
             L+D L K   L+ A       RE+++S
Sbjct: 871 VVLLDALHKADCLEQAAIVGAVLREMAKS 899


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 112/201 (55%), Gaps = 9/201 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY T+IDG CKEG +D A E+  +M DE +  + VTY +LI G   +    ++E 
Sbjct: 416 KPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSER 475

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EMM+ GL+ D  T+ +++D  CKN  +    +LL  M   G +P       +V Y  
Sbjct: 476 ILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKP------GVVTYNV 529

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++G C +G++KNA  L  ++   G+ P+ +TYNI +   C   ++  A +L      KG
Sbjct: 530 VMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAEEL---KSAKG 586

Query: 193 VAPNCVIFTTLMPSFIRKNET 213
           +  +  ++T+L+  F++K  T
Sbjct: 587 MVSDFGLYTSLINEFVKKKST 607



 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY   + GLCK G +  A E+F +M++  +NPN V + +LI   C   +GN A  L
Sbjct: 312 PDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHC--KEGNVAAGL 369

Query: 74  FI--EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM  RG+++D+V +N + + LC+ R +  A  +++ M   G++PD       V Y 
Sbjct: 370 ELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDK------VTYT 423

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDG CK G+L  A E+ Q ++  G+  + VTY   I  L    +   +  +  +M   
Sbjct: 424 TLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEA 483

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           G+ P+   +T ++ +F + ++     +LL+ M  +   P     +++++
Sbjct: 484 GLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMN 532



 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VT+NT++ G+CK   ++ A  L   M    + P+V TY + + G C A    +A  +
Sbjct: 277 PTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEM 336

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM +RG+  + V F  ++D  CK   +     L   M   G++ D      +VAY  L
Sbjct: 337 FEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTD------LVAYNAL 390

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
            +GLC++  LK A ++ + +   GL P+ VTY   I   C + ++D A ++  +M  +GV
Sbjct: 391 ANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGV 450

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           A + V +TTL+    +   +     +L  M +  + P  +  ++++D   KN 
Sbjct: 451 ALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNS 503



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 6/238 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    +N ++  + + G +  A+ +F +M    + P VVT+N+L+ G C A+D N A  L
Sbjct: 242 PEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANAL 301

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G+  DV T+   M  LCK  ++ +A  + + M + GV P      N V +  L
Sbjct: 302 RGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNP------NTVVFTTL 355

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ID  CK G +    EL + +   G+  ++V YN   + LC    +  A+D+  +M   G+
Sbjct: 356 IDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGL 415

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
            P+ V +TTL+  F ++ E    +E+ + M    V       + ++  L K+  S++S
Sbjct: 416 KPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDS 473



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 8/235 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV   PNTV + T+ID  CKEG V    EL  +M    I  ++V YN+L +G C   
Sbjct: 341 RERGV--NPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVR 398

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D   A  +  EM + GL+ D VT+  ++D  CK  ++D A  +   M   GV       +
Sbjct: 399 DLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGV------AL 452

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           + V Y  LI GL K G+  ++  +   +  AGL P+  TY + I A C +  +     L 
Sbjct: 453 DEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLL 512

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            +M+ KG  P  V +  +M  F    +      LL +M    V P     +I++D
Sbjct: 513 KEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLD 567



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           V +A   +LQ+ D  + P    +N L+     +     A  +F EM+ RG+   VVTFN 
Sbjct: 225 VPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNT 284

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M  +CK   ++ A  L  LM + GV PD +       YG  + GLCK G++++A E+ +
Sbjct: 285 LMSGMCKASDLNSANALRGLMAKAGVAPDVY------TYGAFMQGLCKAGRIQDAVEMFE 338

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G+ PN V +   I A C +  +    +L  +M  +G+  + V +  L     R  
Sbjct: 339 EMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVR 398

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +     +++  M    + P     + ++D   K
Sbjct: 399 DLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCK 431


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++    KEG +  A+ +F  +   ++ P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALIS 354



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  +  GV  +P+  TY+ +I+GLCKE  +D A ELF +M D  + PN VT+ +LI G
Sbjct: 193 LKNAMQASGV--QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     + A  ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  + Y  LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   
Sbjct: 311 K------ITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  +  +M   G+ P    +T ++  F +K +     +LL+ M +   MP
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 MPSVV 417



 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +D+   L   M+   + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P + TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGYMPSVVT 418



 Score = 37.4 bits (85), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 12/207 (5%)

Query: 50  NVVTYNSLIHGFCYANDGNEAEYLF-IEMMDRGLQSDVVTFNVIMDELCKNRK-MDEATR 107
           N+ +Y ++IH  C      EA+ L  I +  +G  S    F  I++     R  +   + 
Sbjct: 12  NLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYVFSG 71

Query: 108 LLDLMIQGGVRPDAF-C-------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAG 157
           L+   ++ G   DA  C       +  +    C  +++ L K+   K      +     G
Sbjct: 72  LITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECG 131

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
              ++  +NI +H+   + ++  A  +F  +    + P+ V F TLM  +I+  +  +  
Sbjct: 132 YPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGF 191

Query: 218 ELLRSMDKRNVMPYASILSIIVDLLVK 244
            L  +M    V P     S++++ L K
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCK 218


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN      ++ GLC+ G   +A EL+ ++ ++    N VT N+LIHG C A    EA  
Sbjct: 404 KPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAK 463

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM++RGL  D +++N ++   CK  K++E  +L + M++ G++PD +       Y  
Sbjct: 464 LLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMY------TYNM 517

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ GLC +GK++ A  L     + G  P+  TY I I   C   ++++   LF +M    
Sbjct: 518 LLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMK 577

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           +  N V++ TL+ ++       +   L   M  R +   ++  S ++  L
Sbjct: 578 IEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGL 627



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 12/255 (4%)

Query: 8   FGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63
           F ++C     P+   ++T+++  C  G VD A ELF +M+   + PNVVTYN++IHG C 
Sbjct: 185 FDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCK 244

Query: 64  ANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
               +EA + F E M++  ++  +VT+ V+++ L K  + DEA  +L  M   G  P   
Sbjct: 245 NGRLDEA-FQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAP--- 300

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N V Y  LIDG C+IG +  A ++   +   G+ PN VT N  I   C   QM+ A 
Sbjct: 301 ---NNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAE 357

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            L  +M   G   N   FT+++     K      +  +  M  RN  P   +L+++V  L
Sbjct: 358 HLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGL 417

Query: 243 VKNEISLNSIPQFNR 257
            +N     +I  + R
Sbjct: 418 CQNGKQSEAIELWYR 432



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           ++++YNT+I   CKEG V++  +L  +M    I P++ TYN L+HG C      EA  L+
Sbjct: 476 DSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLW 535

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            E    G   D  T+ +++D  CK  +++E  +L   M+   +      E N V YG LI
Sbjct: 536 HECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKI------EQNAVVYGTLI 589

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C+ G ++ A  L   +   G+     TY+  IH L N   +D A+ L  +M  +G++
Sbjct: 590 RAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLS 649

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           PN V +T L+  + +  +  KV  +L+ M   NV P     +I+++
Sbjct: 650 PNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMIN 695



 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 6/220 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN ++ GLC  G +++A  L+ + K     P+  TY  +I G+C AN   E E 
Sbjct: 509 QPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEK 568

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+   ++ + V +  ++   C+N  M EA RL D M   G+   +        Y  
Sbjct: 569 LFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTS------ATYSS 622

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GL  IG + +A +L   + + GL PNVV Y   I   C   QM K   +  +M +  
Sbjct: 623 LIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINN 682

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           V PN + +T ++    +        +LL  M ++ ++P A
Sbjct: 683 VHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDA 722



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 9/212 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TY  +IDG CK   V++ ++LF +M    I  N V Y +LI  +C   +  EA  L
Sbjct: 545 PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRL 604

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M  RG+     T++ ++  L     +D A +LLD M + G+ P      N+V Y  L
Sbjct: 605 RDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSP------NVVCYTAL 658

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK+G++     + Q ++   + PN +TY I I+  C    M  A  L  +M  KG+
Sbjct: 659 IGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGI 718

Query: 194 APNCVIFTTLMPSFIRKN---ETSKVIELLRS 222
            P+ V +  L   F ++    E  KV +L+ +
Sbjct: 719 VPDAVTYNALTNGFCKEGKMEEALKVCDLMST 750



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 29/247 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY  +I+GL K    D+A  +  +M D    PN V YN+LI G+C   + + A  
Sbjct: 264 KPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQ 323

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G+  + VT N ++   CK+ +M+ A  LL+ M+ GG   +     +++   C
Sbjct: 324 IRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLC 383

Query: 133 -----------------------------LIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                        L+ GLC+ GK   A EL   L   G   N V
Sbjct: 384 LKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTV 443

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           T N  IH LC     ++A  L  +M  +G+  + + + TL+ +  ++ +  +  +L   M
Sbjct: 444 TSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEM 503

Query: 224 DKRNVMP 230
            +R + P
Sbjct: 504 VRRGIQP 510



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 114/231 (49%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T+ ++I  LC +   D A    ++M   N  PN      L+ G C     +EA  L+
Sbjct: 371 NQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELW 430

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             ++++G  ++ VT N ++  LC+    +EA +LL  M++ G+  D+      ++Y  LI
Sbjct: 431 YRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDS------ISYNTLI 484

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              CK GK++   +L + + R G+ P++ TYN+ +H LCN  ++++A  L+ + +  G  
Sbjct: 485 LACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNF 544

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+   +  ++  + + N   +  +L + M    +   A +   ++    +N
Sbjct: 545 PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCEN 595



 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 6/194 (3%)

Query: 37  ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
           ELF  + ++ + P++ T N L+     AN+   +  +F  M   G+  DV  F+ +++  
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAF 207

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C   ++D+A  L   M + GV P      N+V Y  +I GLCK G+L  A +  + + + 
Sbjct: 208 CTGGRVDDAIELFRKMEKVGVAP------NVVTYNNIIHGLCKNGRLDEAFQFKEKMEKE 261

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
            + P++VTY + I+ L   E+ D+A+ +  +M  +G APN V++ TL+  + R    S  
Sbjct: 262 RVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTA 321

Query: 217 IELLRSMDKRNVMP 230
           +++   M    + P
Sbjct: 322 LQIRDDMISNGISP 335



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 6/154 (3%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
           + TY+++I GL   G VD A +L  +M+ E ++PNVV Y +LI G+C     ++ + +  
Sbjct: 617 SATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQ 676

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           EM    +  + +T+ ++++  CK   M  A +LL+ M Q G+ PDA      V Y  L +
Sbjct: 677 EMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDA------VTYNALTN 730

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169
           G CK GK++ A ++   ++  G+  + +TY   I
Sbjct: 731 GFCKEGKMEEALKVCDLMSTGGISLDDITYTTLI 764



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 6/126 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V Y  +I G CK G + K   +  +M   N++PN +TY  +I+G C   +   A  L
Sbjct: 650 PNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKL 709

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G+  D VT+N + +  CK  KM+EA ++ DLM  GG+  D       + Y  L
Sbjct: 710 LNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDD------ITYTTL 763

Query: 134 IDGLCK 139
           IDG  K
Sbjct: 764 IDGWHK 769



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 56/114 (49%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+  L K  ++K + ++   +   G+ P+V  ++  ++A C   ++D A +LF  ME  G
Sbjct: 168 LLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVG 227

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           VAPN V +  ++    +     +  +    M+K  V P      ++++ LVK E
Sbjct: 228 VAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLE 281



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 47/98 (47%)

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           EL   L   GL P++ T N  + +L    ++  ++ +F  M   GV P+  +F+T++ +F
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAF 207

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
                    IEL R M+K  V P     + I+  L KN
Sbjct: 208 CTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKN 245


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 6/247 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K     YN++I+G CK+G +D+A+ L   M  E + P   +Y+ LI G C   D +    
Sbjct: 428 KVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCME 487

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM +RG+  +  TF  +++  CK++KMDEA RL D MI   V P      N V +  
Sbjct: 488 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIP------NEVTFNV 541

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G C +G ++ A +L   +   GL P+  TY   I  LC    + KA++   D+E   
Sbjct: 542 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 601

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
              N    T L+  F R+   ++   L   M  R V       +IIV   +K      S 
Sbjct: 602 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 661

Query: 253 PQFNRQK 259
             F   K
Sbjct: 662 VLFREMK 668



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 114/240 (47%), Gaps = 17/240 (7%)

Query: 8   FGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           F + CK       PN   YN +ID LCK    D A  LF +M    + PN VTY  LIH 
Sbjct: 346 FSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHA 405

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C      +A  LF +M D+G++  V  +N +++  CK   +D A  LL  M++ G+ P 
Sbjct: 406 LCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPT 465

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A       +Y  LI GLC+ G L +  EL + +   G+  N  T+   I+  C D++MD+
Sbjct: 466 A------ASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDE 519

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           A  LF  M    V PN V F  ++  +       K  +L   M +  + P    Y S++S
Sbjct: 520 AARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLIS 579



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    + +ID L K+  V++A  L  ++ D  + PNV  YN+LI   C     ++A+ L
Sbjct: 324 PSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRL 383

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL+ + VT+ +++  LCK   +++A  L D M   G++      + +  Y  L
Sbjct: 384 FKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIK------VTVYPYNSL 437

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK G L  AR L   + + GL P   +Y+  I  LC +  +    +L  +M  +G+
Sbjct: 438 INGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGI 497

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A N   FT L+  F +  +  +   L   M   NV+P     +++++
Sbjct: 498 AWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIE 544



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 13/248 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E GV  KP+ + Y  +ID L KE  + +A   + QM  +  +PN VT+  LI+  C + 
Sbjct: 668 KEQGV--KPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSG 725

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               AE L  EM+   +  +  T+N  +D       M++A  L   M+QG +        
Sbjct: 726 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL-------A 778

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           +IV++  LI GLCK GK++ A +L   +T +G  P+ ++Y+  IH LC    ++KA +L+
Sbjct: 779 SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELW 838

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVDL 241
            +M  KG+ P+ V +   +       E+ K + +  +M +  V P    Y ++LS I  +
Sbjct: 839 NEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLM 898

Query: 242 LVKNEISL 249
           + K +  L
Sbjct: 899 VSKGQALL 906



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V YN ++ GLCK   V +A E+   M +  +  + VTY +L++GFC   +   A  
Sbjct: 253 KASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALR 312

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G        + ++DEL K   ++EA  L   +   G+ P      N+ AY  
Sbjct: 313 ITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVP------NVFAYNA 366

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK  +  +A  L + +   GL PN VTY I IHALC    ++ A  LF  M  KG
Sbjct: 367 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKG 426

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +      + +L+  + ++    +   LL  M K  + P A+  S ++  L +N   L+S 
Sbjct: 427 IKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNG-DLSSC 485

Query: 253 PQFNRQ 258
            + +R+
Sbjct: 486 MELHRE 491



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 11/233 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY ++I GLC    V KA E    +++     N  +  +L++GF       E  +
Sbjct: 568 KPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYH 627

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM  RG++ D+V+F +I+    K    +++  L   M + GV+PD       + Y C
Sbjct: 628 LWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDD------IFYTC 681

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID L K   +  A      +   G  PN VT+ + I+ LC    +  A  L  +M    
Sbjct: 682 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 741

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PN   +   +  F  + +  K  +L  +M + ++   ASI+S   ++L+K 
Sbjct: 742 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL---ASIVSF--NILIKG 789



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 45/260 (17%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T + I+  L K      A++LF +M    ++ +   Y + I  +C + + + A  L 
Sbjct: 185 NQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV 244

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           + M   G+++  V +NV+M  LCKN ++ EA  + ++M+  GV  D       V Y  L+
Sbjct: 245 VRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE------VTYRTLV 298

Query: 135 DGLCKIGKLKNARELSQSLTR-----------------------------------AGLM 159
            G C++ +L+ A  ++  + R                                    G++
Sbjct: 299 YGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMV 358

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           PNV  YN  I  LC +E+ D A  LF +M  +G+ PN V +  L+ +  ++      + L
Sbjct: 359 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 418

Query: 220 LRSMD----KRNVMPYASIL 235
              M     K  V PY S++
Sbjct: 419 FDKMRDKGIKVTVYPYNSLI 438


>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g16890, mitochondrial-like
           [Cucumis sativus]
          Length = 688

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 104/191 (54%), Gaps = 9/191 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYNT+I G C+ G +DKA+EL   + +    P++ T+NSLI G C A+    A   
Sbjct: 498 PNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGC 557

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM++  +  +V+T+N+++   C    +  +T LL  M   G++PD F      ++  L
Sbjct: 558 FTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTF------SFNAL 611

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G     + + A +L  S+ R G+ P+  TY   I +LC   + DKA ++FL M+  G 
Sbjct: 612 IQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGC 671

Query: 194 APN---CVIFT 201
            P+   C +F+
Sbjct: 672 TPDSYTCSLFS 682



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN +ID LCK   +D+A E+F  + +  I+PN+VTYN+LI GFC   + ++A+ L 
Sbjct: 464 NIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELL 523

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             +++   + D+ TFN ++D LC+  K + A      M++  V P      N++ Y  LI
Sbjct: 524 EMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPP------NVITYNILI 577

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C IG +  +  L + +   G+ P+  ++N  I       +  KA  LF  M   G+ 
Sbjct: 578 CSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQ 637

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+   +  L+ S  +     K  E+  SM +    P +   S+  D L  +
Sbjct: 638 PDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAHS 688



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TY T+I+ L K G ++       ++ ++ +  N+ +YN +I   C     + A  
Sbjct: 427 KPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASE 486

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F ++ +RG+  ++VT+N ++   C+N  MD+A  LL+++++   RPD F       +  
Sbjct: 487 MFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIF------TFNS 540

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLC+  K +NA      +    + PNV+TYNI I + C    + ++  L   M++ G
Sbjct: 541 LIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHG 600

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   F  L+  +  KN   K  +L  SM +  + P
Sbjct: 601 IQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQP 638



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+N++IDGLC+    + A   F +M + ++ PNV+TYN LI  FC   D + + +
Sbjct: 532 RPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTH 591

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M   G+Q D  +FN ++       +  +A +L D M++ G++PD +       YG 
Sbjct: 592 LLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNY------TYGA 645

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           LI  LCK G+   ARE+  S+   G  P+  T
Sbjct: 646 LIKSLCKSGRHDKAREIFLSMKENGCTPDSYT 677



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 114/259 (44%), Gaps = 36/259 (13%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF--CYANDGNEAE 71
           PN  TY  +IDG        +  ++   MK+ N+ PN  T  SL+HG   C A D  +A 
Sbjct: 297 PNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGVFRCIAPD--KAF 354

Query: 72  YLFIEMMDR-------------------GLQSDVV-------TFNVIMDELCKNRKMDEA 105
            L +E ++R                    + S+ V       TFN+ +  + K   +   
Sbjct: 355 ELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFXPSSSTFNITLACVLKKLDLKVT 414

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
             + D  +Q GV+P          Y  LI+ L K GK++        L   GL+ N+ +Y
Sbjct: 415 CTVFDNCVQSGVKP------GFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSY 468

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N+ I  LC  + MD+A ++F D+  +G++PN V + TL+  F R     K  ELL  + +
Sbjct: 469 NMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLE 528

Query: 226 RNVMPYASILSIIVDLLVK 244
               P     + ++D L +
Sbjct: 529 SRFRPDIFTFNSLIDGLCQ 547



 Score = 97.1 bits (240), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
            V+  P++ T+N  +  + K+  +     +F       + P   TY +LI     A    
Sbjct: 388 AVMFXPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKME 447

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
                   +++ GL S++ ++N+++D LCK + MD A+ +   +   G+ P      NIV
Sbjct: 448 IGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISP------NIV 501

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI G C+ G +  A+EL + L  +   P++ T+N  I  LC   + + A   F +M
Sbjct: 502 TYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEM 561

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
               V PN + +  L+ SF    + S+   LLR M    + P
Sbjct: 562 VEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQP 603



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T  YN ++D L K   +D A   F QM   N  P+  TYN LIHG C     +EA  L
Sbjct: 227 PTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRL 286

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
             +M   G   +V T+ +++D     ++  E  ++L  M +  V P+
Sbjct: 287 MKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPN 333



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           GL      +N +MD L K+  +D A      M      PD F       Y  LI G+C++
Sbjct: 224 GLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRF------TYNILIHGVCRL 277

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
           G +  A  L + +   G  PNV TY I I    N ++  +   +   M+ + V PN    
Sbjct: 278 GVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATM 337

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKR 226
            +L+    R     K  ELL    +R
Sbjct: 338 RSLVHGVFRCIAPDKAFELLLEFVER 363



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 6/159 (3%)

Query: 30  GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89
           G  +   E+F Q+    +NP    YN+++     +N  + A   F +M       D  T+
Sbjct: 208 GLANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTY 267

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149
           N+++  +C+   +DEA RL+  M   G  P      N+  Y  LIDG     +     ++
Sbjct: 268 NILIHGVCRLGVVDEALRLMKQMEGLGYFP------NVFTYTILIDGFFNAKRAGETFKV 321

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Q++    ++PN  T    +H +      DKA +L L+ 
Sbjct: 322 LQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEF 360



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%)

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  ++D L K   L  A    Q ++    +P+  TYNI IH +C    +D+A  L   ME
Sbjct: 232 YNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQME 291

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             G  PN   +T L+  F       +  ++L++M +RNV+P  + +  +V
Sbjct: 292 GLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLV 341



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T ++N +I G   +    KA++LF  M    I P+  TY +LI   C +   ++A  
Sbjct: 602 QPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKARE 661

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKN 99
           +F+ M + G   D  T ++  D L  +
Sbjct: 662 IFLSMKENGCTPDSYTCSLFSDTLAHS 688


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 12/219 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  TYN +I G C  G +  A  LF  MK EN+  +  T+N+L+  FC   +  E + +
Sbjct: 187 PDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEADEYTFNTLVSAFCKEGNVREGKAV 246

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA-----FCEIN-- 126
              MM  G++ D++T+N +MD  C  +++D+A  + + M+Q GV  +      F E++  
Sbjct: 247 VAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCK 306

Query: 127 -----IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                 +AY  LIDG CK G++  A EL   +   G  PN++TYN  ++ALC    ++K 
Sbjct: 307 EIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYALCKIHHVEKT 366

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
             L   ++VKG+ P+   +T L     +     +  E+ 
Sbjct: 367 IALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAREIF 405



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 24/189 (12%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T+NT++   CKEG V + K +   M  E + P+++TYNSL+ G+C   + ++A+ +F  M
Sbjct: 226 TFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTM 285

Query: 78  MDRGLQSDVVTFNV------------------IMDELCKNRKMDEATRLLDLMIQGGVRP 119
           + RG+ ++V T N+                  ++D  CK+ ++ +A  L+D M   G  P
Sbjct: 286 VQRGVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPP 345

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
                 NI+ Y  ++  LCKI  ++    L + +   G+ P+  TY I  + L  D +++
Sbjct: 346 ------NIITYNSILYALCKIHHVEKTIALLRKIKVKGIQPDAYTYTILTNGLFKDGRLE 399

Query: 180 KAHDLFLDM 188
           +A ++F D+
Sbjct: 400 EAREIFPDL 408



 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 26/219 (11%)

Query: 13  KPNTVTYNTIIDGLCKEG---FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           KP+  TYN +I+   + G   F+D+                 V+Y +LI+G C   +   
Sbjct: 95  KPDLFTYNVLINCFSQLGHTHFLDR-----------------VSYETLINGLCKVGETRA 137

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  L  E+ ++ +Q DVV +  I++ LCK++ +D+A  L   M+   V PD F       
Sbjct: 138 ALRLLKEVNEKIVQYDVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVF------T 191

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +I G C +G+LK+A  L   +    +  +  T+N  + A C +  + +   +   M 
Sbjct: 192 YNAMIYGFCVVGRLKDAIGLFNDMKLENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMM 251

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +GV P+ + + +LM  +    E  K   +  +M +R V
Sbjct: 252 KEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRGV 290



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 20/190 (10%)

Query: 39  FLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
           F ++ ++   P +  +  ++     +N  + A     ++  +G++ D+ T+NV+++   +
Sbjct: 51  FNRLTNQIPTPPISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFSQ 110

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
                  T  LD                 V+Y  LI+GLCK+G+ + A  L + +    +
Sbjct: 111 LGH----THFLDR----------------VSYETLINGLCKVGETRAALRLLKEVNEKIV 150

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
             +VV Y   I+ LC D+ +D A DL+ +M  K V+P+   +  ++  F         I 
Sbjct: 151 QYDVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIG 210

Query: 219 LLRSMDKRNV 228
           L   M   NV
Sbjct: 211 LFNDMKLENV 220



 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TYN+I+  LCK   V+K   L  ++K + I P+  TY  L +G        EA  +
Sbjct: 345 PNIITYNSILYALCKIHHVEKTIALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAREI 404

Query: 74  FIEM 77
           F ++
Sbjct: 405 FPDL 408


>gi|414591640|tpg|DAA42211.1| TPA: hypothetical protein ZEAMMB73_215753 [Zea mays]
          Length = 299

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN V Y T+++G CK G +D+   LF +M    I P+ + Y+ +I G   A     A+ 
Sbjct: 51  EPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKV 110

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM + G+  D+ T+N+++  L KNR  DEA  L   +    V+      INI+    
Sbjct: 111 KFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVK------INIITLNT 164

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +IDG+ +  +++ A++L  S++R+ L+P+VVTY+I I  L  +  +++A D+F  M+  G
Sbjct: 165 MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 224

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             PN  +   ++   ++KNE  +    L  +D+RN         ++VDL 
Sbjct: 225 CEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLF 274



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 6/199 (3%)

Query: 46  NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
            ++P+ V Y+ L+ G+C      +A  +F  M+  G++ +VV +  +++  CK  ++DE 
Sbjct: 14  GLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEG 73

Query: 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
             L   M+Q G++P        + Y  +IDGL + G+   A+     +T +G+  ++ TY
Sbjct: 74  LSLFREMLQRGIKPST------ILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTY 127

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           NI +  L  +   D+A  LF ++    V  N +   T++    +     +  +L  S+ +
Sbjct: 128 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 187

Query: 226 RNVMPYASILSIIVDLLVK 244
             ++P     SI++  L+K
Sbjct: 188 SRLVPSVVTYSIMITNLIK 206



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A+ +F   ++ GL  D V ++++MD  C   KM++A R+ D M+  G+ P      N+V
Sbjct: 2   DAQNIFDLKVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP------NVV 55

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L++G CKIG++     L + + + G+ P+ + Y+I I  L    +   A   F +M
Sbjct: 56  VYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEM 115

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
              G+A +   +  ++    +     + I L + +   NV
Sbjct: 116 TESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNV 155



 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 45/96 (46%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY+ +I  L KEG V++A+++F  M++    PN    N ++      N+   A   
Sbjct: 192 PSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAY 251

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109
             ++ +R    + +T  +++D         E  R L
Sbjct: 252 LSKIDERNFSLEHLTTMLLVDLFSSKGTCREHIRFL 287


>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
 gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
          Length = 626

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 129/238 (54%), Gaps = 8/238 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GV+  PN+ T+N +    CK+G +DK  +   +M++E   P++VTYN+LI+G+C     +
Sbjct: 247 GVI--PNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRLS 304

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           +A YL+  M  R +  D+V++  +M+ LCK  ++ EA +LL  M+  G+ PD      +V
Sbjct: 305 DAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPD------VV 358

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           +Y  LI G CK GK+  ++ L   +   G+ P+  T  + I     +  +  A +L +++
Sbjct: 359 SYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVEL 418

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           E  GV+ +  I+  L+ S   ++       LL  M +R  +P+  I + +++ L K +
Sbjct: 419 EKFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGD 476



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 8/219 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTYNT+I+G C  G +  A  L+  M    + P++V+Y +L++G C      EA  
Sbjct: 284 EPDIVTYNTLINGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQ 343

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYG 131
           L   M+ RGL  DVV++N ++   CK  KM E+  LL  MI  G+ PD+F C +      
Sbjct: 344 LLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRV------ 397

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G  K G L +A  L   L + G+  +   Y+  + +LC +++   A  L   M  +
Sbjct: 398 -LIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMSQR 456

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G  P+  I+  L+ S  + +  +  + L   +   N+ P
Sbjct: 457 GYIPHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINP 495



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 12/239 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E G V  P+ +  N +++GL K   +     ++ +M    + PN  T+N L H FC   D
Sbjct: 210 EVGYV--PSVIACNYLLNGLLKSNHIHLCWHVYGEMGRVGVIPNSYTFNILTHLFCKDGD 267

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            ++      +M + G + D+VT+N +++  C   ++ +A  L  +M +  V PD      
Sbjct: 268 IDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRLSDAFYLYRIMYRRCVLPD------ 321

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V+Y  L++GLCK G+++ A +L   +   GL P+VV+YN  I   C + +M ++  L  
Sbjct: 322 LVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLY 381

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +M   G+ P+      L+  + ++      + L+  ++K  V    SI   I D LV +
Sbjct: 382 EMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGV----SISPDIYDYLVAS 436



 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 111/219 (50%), Gaps = 6/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  + + ++ ++    K G + +    F+Q+ +    P+V+  N L++G   +N  +   
Sbjct: 178 CNWDPIIFDLLLKAYVKAGMIKEGFRTFMQILEVGYVPSVIACNYLLNGLLKSNHIHLCW 237

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           +++ EM   G+  +  TFN++    CK+  +D+    L+ M + G  PD      IV Y 
Sbjct: 238 HVYGEMGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPD------IVTYN 291

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI+G C  G+L +A  L + + R  ++P++V+Y   ++ LC + ++ +AH L   M  +
Sbjct: 292 TLINGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHR 351

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P+ V + TL+  + ++ +  +   LL  M    + P
Sbjct: 352 GLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFP 390



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 108/267 (40%), Gaps = 41/267 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF------------ 61
           P+ V+YNT+I G CKEG + ++K L  +M    I P+  T   LI G+            
Sbjct: 355 PDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNL 414

Query: 62  -----------------------CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
                                  C  +    A+ L   M  RG    V  +N +++ LCK
Sbjct: 415 VVELEKFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCK 474

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              + +A  L   ++ G + P      N++ Y  LI  LC++G+   A +L + +   GL
Sbjct: 475 GDCVADALSLKAEIVVGNINP------NLLTYKALIRCLCRMGRSIEAEKLMEEMLHFGL 528

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+       IH  C ++   KA  L +    +    +   ++TL+       + +K +E
Sbjct: 529 QPDPEICRAMIHGYCREKDAGKAESLLVLFAKEFQIFDSESYSTLVRIVCEDGDVAKFME 588

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVKN 245
           L   M K    P +     ++D L KN
Sbjct: 589 LQERMLKVGFAPNSLTCKYMIDGLRKN 615



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 23/204 (11%)

Query: 44  DENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM-----------------DRGLQSDV 86
           D  + P+ + Y  ++H   ++ +  +A     E++                  +    D 
Sbjct: 123 DLGLKPSTLNYCLILHVLAWSKEFEQAMKFLTELILLVKDTDEDVFQCLFLCCQDCNWDP 182

Query: 87  VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146
           + F++++    K   + E  R    +++ G  P      +++A   L++GL K   +   
Sbjct: 183 IIFDLLLKAYVKAGMIKEGFRTFMQILEVGYVP------SVIACNYLLNGLLKSNHIHLC 236

Query: 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206
             +   + R G++PN  T+NI  H  C D  +DK +D    ME +G  P+ V + TL+  
Sbjct: 237 WHVYGEMGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLING 296

Query: 207 FIRKNETSKVIELLRSMDKRNVMP 230
           +  +   S    L R M +R V+P
Sbjct: 297 YCGRGRLSDAFYLYRIMYRRCVLP 320



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 11/206 (5%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           +FGV   P+   Y+ ++  LC+E     AK L  +M      P+V  YN LI   C  + 
Sbjct: 420 KFGVSISPDI--YDYLVASLCEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDC 477

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA-FCEI 125
             +A  L  E++   +  +++T+  ++  LC+  +  EA +L++ M+  G++PD   C  
Sbjct: 478 VADALSLKAEIVVGNINPNLLTYKALIRCLCRMGRSIEAEKLMEEMLHFGLQPDPEICR- 536

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
                  +I G C+      A  L     +   + +  +Y+  +  +C D  + K  +L 
Sbjct: 537 ------AMIHGYCREKDAGKAESLLVLFAKEFQIFDSESYSTLVRIVCEDGDVAKFMELQ 590

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKN 211
             M   G APN +     M   +RKN
Sbjct: 591 ERMLKVGFAPNSLT-CKYMIDGLRKN 615


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 6/247 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K     YN++I+G CK+G +D+A+ L   M  E + P   +Y+ LI G C   D +    
Sbjct: 405 KVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCME 464

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM +RG+  +  TF  +++  CK++KMDEA RL D MI   V P      N V +  
Sbjct: 465 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIP------NEVTFNV 518

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G C +G ++ A +L   +   GL P+  TY   I  LC    + KA++   D+E   
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
              N    T L+  F R+   ++   L   M  R V       +IIV   +K      S 
Sbjct: 579 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 638

Query: 253 PQFNRQK 259
             F   K
Sbjct: 639 VLFREMK 645



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 114/240 (47%), Gaps = 17/240 (7%)

Query: 8   FGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           F + CK       PN   YN +ID LCK    D A  LF +M    + PN VTY  LIH 
Sbjct: 323 FSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHA 382

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C      +A  LF +M D+G++  V  +N +++  CK   +D A  LL  M++ G+ P 
Sbjct: 383 LCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPT 442

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A       +Y  LI GLC+ G L +  EL + +   G+  N  T+   I+  C D++MD+
Sbjct: 443 A------ASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDE 496

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           A  LF  M    V PN V F  ++  +       K  +L   M +  + P    Y S++S
Sbjct: 497 AARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLIS 556



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    + +ID L K+  V++A  L  ++ D  + PNV  YN+LI   C     ++A+ L
Sbjct: 301 PSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRL 360

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL+ + VT+ +++  LCK   +++A  L D M   G++      + +  Y  L
Sbjct: 361 FKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIK------VTVYPYNSL 414

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK G L  AR L   + + GL P   +Y+  I  LC +  +    +L  +M  +G+
Sbjct: 415 INGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGI 474

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A N   FT L+  F +  +  +   L   M   NV+P     +++++
Sbjct: 475 AWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIE 521



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 13/241 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E GV  KP+ + Y  +ID L KE  + +A   + QM  +  +PN VT+  LI+  C + 
Sbjct: 645 KEQGV--KPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSG 702

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               AE L  EM+   +  +  T+N  +D       M++A  L   M+QG +        
Sbjct: 703 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL-------A 755

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           +IV++  LI GLCK GK++ A +L   +T +G  P+ ++Y+  IH LC    ++KA +L+
Sbjct: 756 SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELW 815

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVDL 241
            +M  KG+ P+ V +   +       E+ K + +  +M +  V P    Y ++LS I  +
Sbjct: 816 NEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLM 875

Query: 242 L 242
           L
Sbjct: 876 L 876



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V YN ++ GLCK   V +A E+   M +  +  + VTY +L++GFC   +   A  
Sbjct: 230 KASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALR 289

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G        + ++DEL K   ++EA  L   +   G+ P      N+ AY  
Sbjct: 290 ITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVP------NVFAYNA 343

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK  +  +A  L + +   GL PN VTY I IHALC    ++ A  LF  M  KG
Sbjct: 344 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKG 403

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +      + +L+  + ++    +   LL  M K  + P A+  S ++  L +N   L+S 
Sbjct: 404 IKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNG-DLSSC 462

Query: 253 PQFNRQ 258
            + +R+
Sbjct: 463 MELHRE 468



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 109/218 (50%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V++  I+    K+   +K+  LF +MK++ + P+ + Y  +I       +  +A  
Sbjct: 615 KLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + +M+  G   + VT  V+++ LCK+  +  A  L   M+ G V P+ F       Y C
Sbjct: 675 CWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKF------TYNC 728

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +D     G ++ A++L  ++ + G + ++V++NI I  LC   ++ +A DL   +   G
Sbjct: 729 FLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESG 787

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +P+C+ ++T++    +  + +K  EL   M  + + P
Sbjct: 788 FSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKP 825



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 11/233 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY ++I GLC    V KA E    +++     N  +  +L++GF       E  +
Sbjct: 545 KPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYH 604

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM  RG++ D+V+F +I+    K    +++  L   M + GV+PD       + Y C
Sbjct: 605 LWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDD------IFYTC 658

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID L K   +  A      +   G  PN VT+ + I+ LC    +  A  L  +M    
Sbjct: 659 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PN   +   +  F  + +  K  +L  +M + ++   ASI+S   ++L+K 
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL---ASIVSF--NILIKG 766



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 45/260 (17%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T + I+  L K      A++LF +M    ++ +   Y + I  +C + + + A  L 
Sbjct: 162 NQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV 221

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           + M   G+++  V +NV+M  LCKN ++ EA  + ++M+  GV  D       V Y  L+
Sbjct: 222 VRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE------VTYRTLV 275

Query: 135 DGLCKIGKLKNARELSQSLTR-----------------------------------AGLM 159
            G C++ +L+ A  ++  + R                                    G++
Sbjct: 276 YGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMV 335

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           PNV  YN  I  LC +E+ D A  LF +M  +G+ PN V +  L+ +  ++      + L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 220 LRSMD----KRNVMPYASIL 235
              M     K  V PY S++
Sbjct: 396 FDKMRDKGIKVTVYPYNSLI 415


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++    KEG +  A+ +F  +   ++ P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  +  GV  +P+  TY+ +I+GLCKE  +D A ELF +M D  + PN VT+ +LI G
Sbjct: 193 LKNAMQASGV--QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     + A  ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  + Y  LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   
Sbjct: 311 K------ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  +  +M   G+ P    +T ++  F +K +     +LL+ M +   MP
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGY 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 MPSVV 417



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +D+   L   M+   + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 102/218 (46%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   K+        T   ++              
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M    K  ++  A  + D + +  +RP      ++V++  
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K+G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M   G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P + TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGYMPSVVT 418


>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 104/191 (54%), Gaps = 9/191 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTYNT+I G C+ G +DKA+EL   + +    P++ T+NSLI G C A+    A   
Sbjct: 507 PNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGC 566

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM++  +  +V+T+N+++   C    +  +T LL  M   G++PD F      ++  L
Sbjct: 567 FTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTF------SFNAL 620

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G     + + A +L  S+ R G+ P+  TY   I +LC   + DKA ++FL M+  G 
Sbjct: 621 IQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGC 680

Query: 194 APN---CVIFT 201
            P+   C +F+
Sbjct: 681 TPDSYTCSLFS 691



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  +YN +ID LCK   +D+A E+F  + +  I+PN+VTYN+LI GFC   + ++A+ L 
Sbjct: 473 NIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELL 532

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             +++   + D+ TFN ++D LC+  K + A      M++  V P      N++ Y  LI
Sbjct: 533 EMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPP------NVITYNILI 586

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
              C IG +  +  L + +   G+ P+  ++N  I       +  KA  LF  M   G+ 
Sbjct: 587 CSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQ 646

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           P+   +  L+ S  +     K  E+  SM +    P +   S+  D L  +
Sbjct: 647 PDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAHS 697



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP   TY T+I+ L K G ++       ++ ++ +  N+ +YN +I   C     + A  
Sbjct: 436 KPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASE 495

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F ++ +RG+  ++VT+N ++   C+N  MD+A  LL+++++   RPD F       +  
Sbjct: 496 MFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIF------TFNS 549

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGLC+  K +NA      +    + PNV+TYNI I + C    + ++  L   M++ G
Sbjct: 550 LIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHG 609

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   F  L+  +  KN   K  +L  SM +  + P
Sbjct: 610 IQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQP 647



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T+N++IDGLC+    + A   F +M + ++ PNV+TYN LI  FC   D + + +
Sbjct: 541 RPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTH 600

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M   G+Q D  +FN ++       +  +A +L D M++ G++PD +       YG 
Sbjct: 601 LLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNY------TYGA 654

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
           LI  LCK G+   ARE+  S+   G  P+  T
Sbjct: 655 LIKSLCKSGRHDKAREIFLSMKENGCTPDSYT 686



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P++ T+N  +  + K+  +     +F       + P   TY +LI     A         
Sbjct: 402 PSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRY 461

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              +++ GL S++ ++N+++D LCK + MD A+ +   +   G+ P      NIV Y  L
Sbjct: 462 MDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISP------NIVTYNTL 515

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G C+ G +  A+EL + L  +   P++ T+N  I  LC   + + A   F +M    V
Sbjct: 516 IGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDV 575

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN + +  L+ SF    + S+   LLR M    + P
Sbjct: 576 PPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQP 612



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 8/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T  YN ++D L K   +D A   F QM   N  P+  TYN LIHG C     +EA  L
Sbjct: 227 PTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRL 286

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M   G   +V T+ +++D     ++  EA ++L  M +  V P      N      L
Sbjct: 287 MKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVP------NEATMRSL 340

Query: 134 IDGLCK-IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           + G+ + I   K    L + + R   +  +V  NI ++ L N+    +A    +    +G
Sbjct: 341 VHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNI-LYCLSNNSMASEAVMFLIKTGKEG 399

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             P+   F   +   ++K +      +  +  +  V P  S    +++ L K
Sbjct: 400 YVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYK 451



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 6/215 (2%)

Query: 30  GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89
           G  +   E+F Q+    +NP    YN+++     +N  + A   F +M       D  T+
Sbjct: 208 GLANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTY 267

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149
           N+++  +C+   +DEA RL+  M   G  P      N+  Y  LIDG     +   A ++
Sbjct: 268 NILIHGVCRLGVVDEALRLMKQMEGLGYFP------NVFTYTILIDGFFNAKRAGEAFKV 321

Query: 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209
            Q++    ++PN  T    +H +      DKA +L L+   +      ++   ++     
Sbjct: 322 LQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSN 381

Query: 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +  S+ +  L    K   +P +S  +I +  ++K
Sbjct: 382 NSMASEAVMFLIKTGKEGYVPSSSTFNITLACVLK 416



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 20/208 (9%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+  TYN +I G+C+ G VD+A  L  QM+     PNV TY  LI GF  A    EA 
Sbjct: 260 CVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAF 319

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ--GGVRPDA-----FCE 124
            +   M +R +  +  T   ++  + +    D+A  LL   ++   G+         +C 
Sbjct: 320 KVLQTMKERNVVPNEATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCL 379

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
            N       +  L K GK              G +P+  T+NIT+  +     +     +
Sbjct: 380 SNNSMASEAVMFLIKTGK-------------EGYVPSSSTFNITLACVLKKLDLKVTCTV 426

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           F +    GV P    + TL+ +  +  +
Sbjct: 427 FDNCVQSGVKPGFSTYLTLIEALYKAGK 454



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T ++N +I G   +    KA++LF  M    I P+  TY +LI   C +   ++A  
Sbjct: 611 QPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKARE 670

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKN 99
           +F+ M + G   D  T ++  D L  +
Sbjct: 671 IFLSMKENGCTPDSYTCSLFSDTLAHS 697


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 6/191 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ + ++  IDGL K G V++A E F +M  +   PN   YNSLIHG C     +EA  L
Sbjct: 591 PDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKL 650

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL  D+ T N+I++  CK  +M  A      M   GV PD       V Y  L
Sbjct: 651 EREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDT------VTYNTL 704

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK+  + +A E    +  +G  P++ TYNI I   C+ +++ +A  +  ++   GV
Sbjct: 705 IGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGV 764

Query: 194 APNCVIFTTLM 204
            PN V + T+M
Sbjct: 765 VPNTVTYNTMM 775



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 8/223 (3%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG+V  P++ T ++++ GL K+G + +A++L  +M D+ +  N V +  L+ G+    D 
Sbjct: 517 FGLV--PSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDT 574

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  L+ EM  RG+  D + F+  +D L K   ++EA      M + G  P+ F     
Sbjct: 575 AGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNF----- 629

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  LI GLC  GKL  A +L + + + GL+P++ T NI I+  C + +M  A D F +
Sbjct: 630 -VYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAE 688

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M   GV P+ V + TL+  + +  +     E L  M      P
Sbjct: 689 MHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDP 731



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 41/268 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKP+ +T++TII   C EG V +A+++F  +++  ++PNV  YN+L+ G+  A D  +A 
Sbjct: 344 CKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQAN 403

Query: 72  YLFIEMMDRGLQSDVVTFNVI-----------------------------------MDEL 96
            L+ EM D+G+  D  TFN++                                   +  L
Sbjct: 404 MLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGL 463

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           C   ++DEA + L+ M++ G+ P      ++VA+  +I    + G   NA +  + +   
Sbjct: 464 CWAGQLDEAMQFLEDMLEKGMPP------SVVAFNSVIAAYSRAGFEDNAHKAYKIMLMF 517

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL+P+  T +  +  L    ++ +A DL   M  KG+  N V FT L+  + +  +T+  
Sbjct: 518 GLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGA 577

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
             L   M+ R + P A   S  +D L K
Sbjct: 578 HSLWYEMEARGICPDAIAFSAFIDGLSK 605



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 10/219 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V +N++I    + GF D A + +  M    + P+  T +S++ G        EA  L
Sbjct: 486 PSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDL 545

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+D+GL  + V F V++D   K      A  L   M   G+ PDA      +A+   
Sbjct: 546 LYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDA------IAFSAF 599

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDGL K G ++ A E    +++ G +PN   YN  IH LCN  ++ +A  L  +M  KG+
Sbjct: 600 IDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGL 659

Query: 194 APNCVIFTT--LMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+  IFTT  ++  F ++       +    M    V P
Sbjct: 660 LPD--IFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTP 696



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 6/216 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N V +  ++DG  K G    A  L+ +M+   I P+ + +++ I G   A    EA   F
Sbjct: 557 NKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAF 616

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM  +G   +   +N ++  LC   K+ EA +L   M Q G+ PD F   NI+     I
Sbjct: 617 SEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIF-TTNII-----I 670

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +G CK G++K+A +    +   G+ P+ VTYN  I   C    M  A +    M   G  
Sbjct: 671 NGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWD 730

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           P+   +   +  F    + S+ + +L  +    V+P
Sbjct: 731 PDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVP 766



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 112/231 (48%), Gaps = 6/231 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   Y+  + GLC  G +D+A +    M ++ + P+VV +NS+I  +  A   + A   
Sbjct: 451 PDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKA 510

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           +  M+  GL     T + ++  L K  ++ EA  LL  MI  G+       +N VA+  L
Sbjct: 511 YKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGL------PVNKVAFTVL 564

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG  K+G    A  L   +   G+ P+ + ++  I  L     +++A++ F +M  KG 
Sbjct: 565 LDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGF 624

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            PN  ++ +L+       +  + ++L R M ++ ++P     +II++   K
Sbjct: 625 VPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCK 675



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 10/227 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN--E 69
           C+P+   YN +I+     G    A      M      P+++T++++I  FC  N+GN  E
Sbjct: 309 CEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFC--NEGNVVE 366

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A  +F  + + GL  +V  +N +M    K R + +A  L + M   G+ PD         
Sbjct: 367 ARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDG------AT 420

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  L+ G  K GK  ++ EL +  + + L+P+   Y++++  LC   Q+D+A     DM 
Sbjct: 421 FNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDML 480

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
            KG+ P+ V F +++ ++ R        +  + M    ++P +S  S
Sbjct: 481 EKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCS 527



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 8/234 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV  +P++   + +   L + G      +L   M  +   P    +N +I  FC   
Sbjct: 235 REVGV--RPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKG 292

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               AE L   M     + DV  +N++++      +  +A   L LMI+ G +P      
Sbjct: 293 YLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKP------ 346

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           +++ +  +I   C  G +  AR++ + +   GL PNV  YN  +        + +A+ L+
Sbjct: 347 SLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLY 406

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            +M  KG+AP+   F  L+    +  + +   EL R     +++P  S+  + V
Sbjct: 407 EEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSV 460



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+TVTYNT+I G CK   +  A E   +M     +P++ TYN  I GFC +   + A  +
Sbjct: 696 PDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTM 755

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E++  G+  + VT+N +M+ +C +  +D A  L   +++    P      N+V    L
Sbjct: 756 LDELIAVGVVPNTVTYNTMMNAVCTDM-LDRAMVLTAKLLKMAFVP------NVVTTNVL 808

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +   CK G  + A    Q L +  L  + + Y + ++ L  D+Q       F+   + G+
Sbjct: 809 LSHFCKQGMPEKALIWGQKLNKL-LRADFIGYWL-VYILSMDKQATAGSTKFIYWLMLGI 866



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 6/220 (2%)

Query: 20  NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79
           NT++ G        ++ E+  +M++  + P+    + L        D      L   M+ 
Sbjct: 212 NTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIR 271

Query: 80  RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139
            G +     FN+++   C+   +  A  LL +M      P   CE ++ AY  LI+    
Sbjct: 272 DGPRPCNHNFNIMILCFCQKGYLRVAESLLFVM------PKFCCEPDVYAYNILINAYRI 325

Query: 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199
            G+  +A      + + G  P+++T++  I A CN+  + +A  +F  ++  G++PN  +
Sbjct: 326 RGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAM 385

Query: 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           + TLM  + +  +  +   L   M  + + P  +  +I+V
Sbjct: 386 YNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILV 425



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N+ +     P+  TYN  I G C    + +A  +  ++    + PN VTYN++++  C  
Sbjct: 722 NKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVC-T 780

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105
           +  + A  L  +++      +VVT NV++   CK    ++A
Sbjct: 781 DMLDRAMVLTAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKA 821



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 6/157 (3%)

Query: 83  QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142
           +SD    N +M     +    E+  +L  M + GVRP +       A   L   L ++G 
Sbjct: 205 ESDFSILNTLMRGFMNSEMAYESLEILSRMREVGVRPSS------SAISILFRLLLRVGD 258

Query: 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202
             +  +L + + R G  P    +NI I   C    +  A  L   M      P+   +  
Sbjct: 259 YGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNI 318

Query: 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           L+ ++  +  TS  +  L  M K    P     S I+
Sbjct: 319 LINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTII 355


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 121/259 (46%), Gaps = 41/259 (15%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC---- 62
           E G VC P+ V YNT+IDG  KEG V+KA +LF +M    I P++VTYNS++H  C    
Sbjct: 176 EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARA 235

Query: 63  -----------------------------YANDGN--EAEYLFIEMMDRGLQSDVVTFNV 91
                                        Y++ G   EA  +F EM    +  DVVT ++
Sbjct: 236 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 295

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M  LCK  K+ EA  + D M   G  PD F      +Y  +++G    G L +  +L  
Sbjct: 296 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVF------SYNIMLNGYATKGCLVDMTDLFD 349

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   G+ P+  T+N+ I A  N   +DKA  +F +M   GV P+ V + T++ +  R  
Sbjct: 350 LMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIG 409

Query: 212 ETSKVIELLRSMDKRNVMP 230
           +    +E    M  + V P
Sbjct: 410 KMDDAMEKFNQMIDQGVAP 428



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 5/235 (2%)

Query: 11  VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
           V  P + TY  ++D   +    + A   F Q+    +  + +  + L+ GFC A   +EA
Sbjct: 72  VLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEA 131

Query: 71  -EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
            + L     + G   DV ++N+++  LC   K  +A  LL +M +GG      C  ++VA
Sbjct: 132 LDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGT----VCSPDVVA 187

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  +IDG  K G +  A +L + + + G+ P++VTYN  +HALC    MDKA      M 
Sbjct: 188 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV 247

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            K V PN   +  L+  +    +  + + + + M + +++P    LS+++  L K
Sbjct: 248 NKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 302



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 10/132 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAE 71
           P+  +YN +++G   +G +    +LF  M  + I P+  T+N  I    YAN G  ++A 
Sbjct: 323 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKA--YANCGMLDKAM 380

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F EM D G++ DVVT+  ++  LC+  KMD+A    + MI  GV PD +      AY 
Sbjct: 381 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKY------AYN 434

Query: 132 CLIDGLCKIGKL 143
           CLI G C  G L
Sbjct: 435 CLIQGFCTHGIL 446



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           N  R+ GV  KP+ VTY T+I  LC+ G +D A E F QM D+ + P+   YN LI GFC
Sbjct: 384 NEMRDHGV--KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 441


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 127/262 (48%), Gaps = 29/262 (11%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ VT+N +I+GL K+G + +AK L  +M    +  +  TYN LI G+C      EA 
Sbjct: 268 CYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEAL 327

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            L+ EM+ RG+   V + N IM   CK  KM +A + L  M++  + PD          F
Sbjct: 328 ALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGF 387

Query: 123 CEI--------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
           C +                    NIV Y  LIDGLC++G L+ A +L + +   G+ P+V
Sbjct: 388 CRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDV 447

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTY + ++  C    M  A + F +M   G+AP+   +T  +   ++  +T+K  +L   
Sbjct: 448 VTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEE 507

Query: 223 MDKRNVMPYASILSIIVDLLVK 244
           M  +   P     ++ V+ L K
Sbjct: 508 MLTKGFPPDVITYNVFVNGLCK 529



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTY  +++G CK G +  AKE F +M    + P+   Y + I G     D  +A  L
Sbjct: 445 PDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKL 504

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+ +G   DV+T+NV ++ LCK   ++EA  LL  MI+ G  PD       V Y   
Sbjct: 505 QEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDH------VTYTSF 558

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +    + G L+  RE+   +   G  P VVTY + IHA   + ++D A   FL+M+ KGV
Sbjct: 559 MHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGV 618

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            PN + +  L+  F +  +  +  +    M ++ + P     +I+++
Sbjct: 619 VPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILIN 665



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 41/261 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   ++NTI+ G CKEG +  A++    M  +N+ P++++YN+LI+GFC   +  EA  L
Sbjct: 340 PTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFIL 399

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E+  R L  ++VT+N ++D LC+   ++ A +L + MI  G+ PD      +V Y  L
Sbjct: 400 LDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPD------VVTYTVL 453

Query: 134 IDGLCKIGKLKNARE-----------------------------------LSQSLTRAGL 158
           ++G CK+G +  A+E                                   L + +   G 
Sbjct: 454 VNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGF 513

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
            P+V+TYN+ ++ LC    +++A +L   M   G  P+ V +T+ M + +      +  E
Sbjct: 514 PPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGRE 573

Query: 219 LLRSMDKRNVMPYASILSIIV 239
           +   M  R   P     ++++
Sbjct: 574 IFYDMLSRGQTPTVVTYTVLI 594



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E+G+  +P   TYNT++   CK G V +A +L  +M++    P+ VT+N LI+G     +
Sbjct: 230 EYGI--RPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGE 287

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A+ L  EM   GL+    T+N ++   CK   + EA  L + M+  GV P       
Sbjct: 288 LQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSP------T 341

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           + ++  ++ G CK GK+ +AR+    + +  LMP++++YN  I+  C    + +A  L  
Sbjct: 342 VASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLD 401

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           ++  + ++ N V + TL+    R  +    ++L   M  R + P     +++V+
Sbjct: 402 ELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVN 455



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N I+  L  +  + KA E++  M +  I P V TYN+++H FC   +   A  L
Sbjct: 200 PDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDL 259

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M +RG     VTFNV+++ L K  ++ +A  L+  M + G+R   +       Y  L
Sbjct: 260 VPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPY------TYNPL 313

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK G L  A  L + +   G+ P V ++N  ++  C + +M  A     DM  K +
Sbjct: 314 ICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNL 373

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            P+ + + TL+  F R     +   LL  +  RN+
Sbjct: 374 MPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNL 408



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 7/210 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ +TYN  ++GLCK G +++A EL  +M  +   P+ VTY S +H         E   +
Sbjct: 515 PDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREI 574

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+ RG    VVT+ V++     N ++D A      M + GV P      N++ Y  L
Sbjct: 575 FYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVP------NVITYNVL 628

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK+ K+  A +    +   G+ PN  TY I I+  CN  +  +A  L+  M  K +
Sbjct: 629 INGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRI 688

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            P+      L+   + K+   + ++ + S+
Sbjct: 689 RPDSCTHGALLKK-LDKDYKVQAVQFIESL 717



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 2/116 (1%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E GVV  PN +TYN +I+G CK   +D+A + F++M+++ I PN  TY  LI+  C   
Sbjct: 614 QEKGVV--PNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMG 671

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
              EA  L+ +M+ + ++ D  T   ++ +L K+ K+     +  L++ G    DA
Sbjct: 672 KWQEALRLYAQMLGKRIRPDSCTHGALLKKLDKDYKVQAVQFIESLILDGDRTIDA 727


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 6/247 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K     YN++I+G CK+G +D+A+ L   M  E + P   +Y+ LI G C   D +    
Sbjct: 405 KVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCME 464

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM +RG+  +  TF  +++  CK++KMDEA RL D MI   V P      N V +  
Sbjct: 465 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIP------NEVTFNV 518

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G C +G ++ A +L   +   GL P+  TY   I  LC    + KA++   D+E   
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
              N    T L+  F R+   ++   L   M  R V       +IIV   +K      S 
Sbjct: 579 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 638

Query: 253 PQFNRQK 259
             F   K
Sbjct: 639 VLFREMK 645



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 114/240 (47%), Gaps = 17/240 (7%)

Query: 8   FGVVCK-------PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           F + CK       PN   YN +ID LCK    D A  LF +M    + PN VTY  LIH 
Sbjct: 323 FSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHA 382

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C      +A  LF +M D+G++  V  +N +++  CK   +D A  LL  M++ G+ P 
Sbjct: 383 LCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPT 442

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
           A       +Y  LI GLC+ G L +  EL + +   G+  N  T+   I+  C D++MD+
Sbjct: 443 A------ASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDE 496

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
           A  LF  M    V PN V F  ++  +       K  +L   M +  + P    Y S++S
Sbjct: 497 AARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLIS 556



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    + +ID L K+  V++A  L  ++ D  + PNV  YN+LI   C     ++A+ L
Sbjct: 301 PSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRL 360

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM  RGL+ + VT+ +++  LCK   +++A  L D M   G++      + +  Y  L
Sbjct: 361 FKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIK------VTVYPYNSL 414

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK G L  AR L   + + GL P   +Y+  I  LC +  +    +L  +M  +G+
Sbjct: 415 INGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGI 474

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           A N   FT L+  F +  +  +   L   M   NV+P     +++++
Sbjct: 475 AWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIE 521



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 13/241 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           +E GV  KP+ + Y  +ID L KE  + +A   + QM  +  +PN VT+  LI+  C + 
Sbjct: 645 KEQGV--KPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSG 702

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
               AE L  EM+   +  +  T+N  +D       M++A  L   M+QG +        
Sbjct: 703 YLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL-------A 755

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           +IV++  LI GLCK GK++ A +L   +T +G  P+ ++Y+  IH LC    ++KA +L+
Sbjct: 756 SIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELW 815

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVDL 241
            +M  KG+ P+ V +   +       E+ K + +  +M +  V P    Y ++LS I  +
Sbjct: 816 NEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLM 875

Query: 242 L 242
           L
Sbjct: 876 L 876



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V YN ++ GLCK   V +A E+   M +  +  + VTY +L++GFC   +   A  
Sbjct: 230 KASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALR 289

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M+  G        + ++DEL K   ++EA  L   +   G+ P      N+ AY  
Sbjct: 290 ITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVP------NVFAYNA 343

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK  +  +A  L + +   GL PN VTY I IHALC    ++ A  LF  M  KG
Sbjct: 344 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKG 403

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           +      + +L+  + ++    +   LL  M K  + P A+  S ++  L +N   L+S 
Sbjct: 404 IKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNG-DLSSC 462

Query: 253 PQFNRQ 258
            + +R+
Sbjct: 463 MELHRE 468



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 11/233 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+  TY ++I GLC    V KA E    +++     N  +  +L++GF       E  +
Sbjct: 545 KPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYH 604

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM  RG++ D+V+F +I+    K    +++  L   M + GV+PD       + Y C
Sbjct: 605 LWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDD------IFYTC 658

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID L K   +  A      +   G  PN VT+ + I+ LC    +  A  L  +M    
Sbjct: 659 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V PN   +   +  F  + +  K  +L  +M + ++   ASI+S   ++L+K 
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL---ASIVSF--NILIKG 766



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 109/218 (50%), Gaps = 7/218 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V++  I+    K+   +K+  LF +MK++ + P+ + Y  +I       +  +A  
Sbjct: 615 KLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + +M+  G   + VT  V+++ LCK+  +  A  L   M+ G V P+ F       Y C
Sbjct: 675 CWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKF------TYNC 728

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +D     G ++ A++L  ++ + G + ++V++NI I  LC   ++ +A DL   +   G
Sbjct: 729 FLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESG 787

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +P+C+ ++T++    +  + +K  EL   M  + + P
Sbjct: 788 FSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKP 825



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 45/260 (17%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T + I+  L K      A++LF +M    ++ +   Y + I  +C + + + A  L 
Sbjct: 162 NQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLV 221

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
           + M   G+++  V +NV+M  LCKN ++ EA  + ++M+  GV  D       V Y  L+
Sbjct: 222 VRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE------VTYRTLV 275

Query: 135 DGLCKIGKLKNARELSQSLTR-----------------------------------AGLM 159
            G C++ +L+ A  ++  + R                                    G++
Sbjct: 276 YGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMV 335

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           PNV  YN  I  LC +E+ D A  LF +M  +G+ PN V +  L+ +  ++      + L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 220 LRSMD----KRNVMPYASIL 235
              M     K  V PY S++
Sbjct: 396 FDKMRDKGIKVTVYPYNSLI 415


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 7/232 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY-ANDGNEAEY 72
           P+  TYNT+I   CK+G   +A  +  +M+   ++P++VTYNSLI+GFC   ND  EA  
Sbjct: 255 PDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALR 314

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M   GL   VVT+N I+ +LC+  K+ +A RLL+ M +  V PD       V    
Sbjct: 315 LREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDN------VTCNT 368

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+  CKIG + +A ++ + +  AGL P+  T+   IH  C   ++D A +   +M   G
Sbjct: 369 LINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAG 428

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +P+   ++ L+ S+  ++    VI L   + ++ +    S+   ++  L K
Sbjct: 429 FSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCK 480



 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 124/259 (47%), Gaps = 20/259 (7%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYN+I+  LC+EG +  A  L  +M +  + P+ VT N+LI+ +C   D   A  +
Sbjct: 326 PGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKV 385

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M++ GL+ D  TF  ++   CK  ++D A   L  M+  G  P      +   Y  L
Sbjct: 386 KKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSP------SYSTYSWL 439

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +D        +    L   L+R GL  ++  Y   I  LC  ++++ A  +F  M+ KG+
Sbjct: 440 VDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGM 499

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM-----------PYA---SILSIIV 239
             + V++T+L  ++ +  +     ++L  MDKR +M            YA   SIL +  
Sbjct: 500 KGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIYRCFSASYAGDGSILGLFW 559

Query: 240 DLLVKNEISLNSIPQFNRQ 258
           D +++  +   +I ++ +Q
Sbjct: 560 DHVIERRLISKNILKYIQQ 578



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 7/219 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+      +++ L K    +   +++ +M    + PN+  +N LIH  C + D  +AE 
Sbjct: 184 KPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQ 243

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM  R +  D+ T+N ++   CK     EA  + D M +GGV PD      IV Y  
Sbjct: 244 LLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPD------IVTYNS 297

Query: 133 LIDGLCK-IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           LI G C+ +  L+ A  L + +   GL P VVTYN  +  LC + ++  A+ L  +M  +
Sbjct: 298 LIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSER 357

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            V P+ V   TL+ ++ +  +    +++ + M +  + P
Sbjct: 358 KVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKP 396



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 7/197 (3%)

Query: 35  AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94
           A ++F  M+     P++     L++    A   N    ++ +M+  G+  ++  FNV++ 
Sbjct: 171 AIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 230

Query: 95  ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154
             CK+  +++A +LL+ M    + PD F       Y  LI   CK G    A  +   + 
Sbjct: 231 ACCKSGDVEKAEQLLNEMESRFIFPDLF------TYNTLISLYCKKGMHYEALGIQDRME 284

Query: 155 RAGLMPNVVTYNITIHALCND-EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
           R G+ P++VTYN  I+  C +   +++A  L   MEV+G+ P  V + +++     + + 
Sbjct: 285 RGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKI 344

Query: 214 SKVIELLRSMDKRNVMP 230
                LL  M +R V P
Sbjct: 345 KDANRLLNEMSERKVEP 361


>gi|255551050|ref|XP_002516573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544393|gb|EEF45914.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 396

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN  T  T+I G CKEG + +A     +MK+  ++PN+V +NSLI GF    D N  + 
Sbjct: 42  QPNERTCGTVISGYCKEGRIKEALRFVHRMKELGVHPNLVVFNSLIKGFVDIMDRNGVDE 101

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M +  ++ DV+TF+ IM+   K   M++   + D M++ G++PD        AY  
Sbjct: 102 VLKLMEEFNVKPDVITFSTIMNAWSKAGYMNKCREIFDDMMKAGIQPDGH------AYSI 155

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L  G  +  + + A +L  ++  +G  PNVV +   I   C+ ++MD A  +F  M   G
Sbjct: 156 LAKGYVRAQEPEKAEQLLTTMMESGFHPNVVIFTTVISGWCSTDRMDCAIRVFDKMCEYG 215

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           ++PN   F TL+  F    +  K  ++L+ M + NV P  S + ++ +
Sbjct: 216 ISPNLKTFETLIGGFSEAKQPWKAEDILQIMREYNVEPKKSTMLLVAE 263



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 6/170 (3%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M+  G Q DVVT+N I     +N + + A  ++  M   GV+P      N    G +I G
Sbjct: 1   MVVSGRQPDVVTYNTIATAYVRNEETNLAEEMISEMQNTGVQP------NERTCGTVISG 54

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
            CK G++K A      +   G+ PN+V +N  I    +    +   ++   ME   V P+
Sbjct: 55  YCKEGRIKEALRFVHRMKELGVHPNLVVFNSLIKGFVDIMDRNGVDEVLKLMEEFNVKPD 114

Query: 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            + F+T+M ++ +    +K  E+   M K  + P     SI+    V+ +
Sbjct: 115 VITFSTIMNAWSKAGYMNKCREIFDDMMKAGIQPDGHAYSILAKGYVRAQ 164



 Score = 45.1 bits (105), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN V + T+I G C    +D A  +F +M +  I+PN+ T+ +LI GF  A    +AE +
Sbjct: 183 PNVVIFTTVISGWCSTDRMDCAIRVFDKMCEYGISPNLKTFETLIGGFSEAKQPWKAEDI 242

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110
              M +  ++    T  ++ +         E  R+L+
Sbjct: 243 LQIMREYNVEPKKSTMLLVAEAWGSIGLTKEVNRILN 279



 Score = 43.5 bits (101), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215
           +G  P+VVTYN    A   +E+ + A ++  +M+  GV PN     T++  + ++    +
Sbjct: 4   SGRQPDVVTYNTIATAYVRNEETNLAEEMISEMQNTGVQPNERTCGTVISGYCKEGRIKE 63

Query: 216 VIELLRSMDKRNVMP----YASILSIIVDLLVKNEIS--LNSIPQFN 256
            +  +  M +  V P    + S++   VD++ +N +   L  + +FN
Sbjct: 64  ALRFVHRMKELGVHPNLVVFNSLIKGFVDIMDRNGVDEVLKLMEEFN 110


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++    KEG +  A+ +F  +   ++ P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +A DL  +M +KG+ P+ +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M K N+    + Y +++S
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALIS 354



 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           + N  +  GV  +P+  TY+ +I+GLCKE  +D A ELF +M D  + PN VT+ +LI G
Sbjct: 193 LKNAMQASGV--QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
            C     + A  ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 121 AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180
                  + Y  LIDG CK G L+ A E  + + +  +  + V Y   I  LC + +   
Sbjct: 311 K------ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           A  +  +M   G+ P    +T ++  F +K +     +LL+ M +   MP
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMP 414



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  ++++P+++TYN+LI+G C   D  +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       VAY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD------VAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGC 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 MPSVV 417



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +D+   L   M+   + P+V TY+ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+D GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A++L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 102/218 (46%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   K+        T   ++              
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M    K  ++  A  + D + +  +RP      ++V++  
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K+G L     L  ++  +G+ P+V TY++ I+ LC + +MD A++LF +M   G
Sbjct: 177 LMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSP 274



 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLC+EG    A+++  +M    + P + TY  +I+ FC   D      L  E
Sbjct: 347 VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGCMPSVVT 418


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 136/303 (44%), Gaps = 64/303 (21%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +YN +I GL K G    A +LF +M ++ + PN +TYN++I G     D      L
Sbjct: 186 PNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRL 245

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
           + +M+  GL+ +V+T+NV++  LC+  +M E   +LD M    + PD F           
Sbjct: 246 WSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSR 305

Query: 124 -----------------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLM----- 159
                             + I AY C  L++GLCK GK+  A E+ Q+L  +GL+     
Sbjct: 306 TGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVI 365

Query: 160 ------------------------------PNVVTYNITIHALCNDEQMDKAHDLFLDME 189
                                         P+ +TYN  I+ L   E++ +AHDL ++ME
Sbjct: 366 YNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEME 425

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
             GV P+   F TL+ ++ R  +  K   +L  M ++ + P       IV+   KN   L
Sbjct: 426 KNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKIL 485

Query: 250 NSI 252
            ++
Sbjct: 486 EAV 488



 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 121/218 (55%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ +TYN +I+GL K   + +A +L ++M+   +NP+V T+N+LI  +  A    +   
Sbjct: 395 RPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFI 454

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M ++GL+ +VV++  I++  CKN K+ EA  +LD M    V P A        Y  
Sbjct: 455 ILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGA------QVYNA 508

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +ID   + G    A  L++ +  +G+ P++VTYN+ I  LC   Q+ +A +L   +   G
Sbjct: 509 IIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYG 568

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +AP+ + + TL+ +   ++ T + +EL + M K  + P
Sbjct: 569 LAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKP 606



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 6/216 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V+Y +I++  CK G + +A  +   M  +++ P    YN++I  +      ++A  
Sbjct: 465 KPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFM 524

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M   G+   +VT+N+++  LCK  ++ EA  LLD +   G+ PD      +++Y  
Sbjct: 525 LAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPD------VISYNT 578

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C       A EL + + + G+ P+  TY +   +L    ++ +  +L+  M  K 
Sbjct: 579 LISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKD 638

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           V P   I+  ++ ++ +  E SKV  L + M  + +
Sbjct: 639 VVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGI 674



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    YN IID   + G  D+A  L  +MK   + P++VTYN LI G C  +  +EAE L
Sbjct: 501 PGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEEL 560

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              + + GL  DV+++N ++   C     D A  L   M + G++P          Y  L
Sbjct: 561 LDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSP------RTYRML 614

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
              L   G++     L Q +    ++P    YNI + A     +  K   L  +M  KG+
Sbjct: 615 FSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGI 674

Query: 194 A 194
           A
Sbjct: 675 A 675



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R +G+   P+ ++YNT+I   C     D+A EL  +M    I P+  TY  L      A 
Sbjct: 565 RNYGLA--PDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAG 622

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98
             +E E L+ +M+D+ +      +N+++D   K
Sbjct: 623 RVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAK 655


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V YNT+I+G C+ G ++ A   F QMK  +I P+ +TYN+LI+G C A     A+ L
Sbjct: 369 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 428

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM D G+   V TFN ++D   +  ++++   +L  M + G++P      N+V+YG +
Sbjct: 429 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKP------NVVSYGSI 482

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++  CK GK+  A  +   +    ++PN   YN  I A       D+A  L   M+  G+
Sbjct: 483 VNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 542

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           +P+ V +  L+     +++ S+  E++ S+    ++P A
Sbjct: 543 SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDA 581



 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 129/266 (48%), Gaps = 31/266 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYN +I+GLCK   +  A++L ++M+D  +NP V T+N+LI  +       +   
Sbjct: 403 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 462

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +  EM + GL+ +VV++  I++  CKN K+ EA  +LD M    V P         DA+ 
Sbjct: 463 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 522

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           E                     +IV Y  LI GLC   ++  A E+  SL+   L+P+ V
Sbjct: 523 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 582

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +YN  I A C    +DKA DL   M   G+      +  L+          ++  L + M
Sbjct: 583 SYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKM 642

Query: 224 DKRNVMPYASILSIIVDLLVK--NEI 247
            + NV+P  +I +I+V+   K  NEI
Sbjct: 643 MQNNVVPSNAIHNIMVEAYSKYGNEI 668



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 118/256 (46%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +YN +I G+ + G    A E+F +M +  + PN +TYN++I G     D      L
Sbjct: 194 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSL 253

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M+  GL+ + +T+NV++  LC+  +M E + LLD M    + PD F           
Sbjct: 254 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 313

Query: 124 -----------------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             + I  Y C  L++GLCK GK+  A E+ QSL  AGL+P  V 
Sbjct: 314 NGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 373

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I+  C   +++ A   F  M+ + + P+ + +  L+    +    +   +LL  M 
Sbjct: 374 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 433

Query: 225 KRNVMPYASILSIIVD 240
              V P     + ++D
Sbjct: 434 DNGVNPTVETFNTLID 449



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TYN ++ GLC+ G + +   L  +M  + + P+  TY+ L  G     D      
Sbjct: 263 KPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLS 322

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF + +  G+     T +++++ LCK+ K+  A  +L  ++  G+ P        V Y  
Sbjct: 323 LFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR------VIYNT 376

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C+ G+L+ A      +    + P+ +TYN  I+ LC  E++  A DL ++M+  G
Sbjct: 377 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 436

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P    F TL+ ++ R  +  K   +L  M +  + P       IV+   KN
Sbjct: 437 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 489



 Score =  103 bits (257), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 10/227 (4%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
           T + +++GLCK+G V  A+E+   + +  + P  V YN+LI+G+C   +   A   F +M
Sbjct: 338 TCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM 397

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
             R ++ D +T+N +++ LCK  ++  A  LL  M   GV P       +  +  LID  
Sbjct: 398 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP------TVETFNTLIDAY 451

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197
            + G+L+    +   +   GL PNVV+Y   ++A C + ++ +A  +  DM  K V PN 
Sbjct: 452 GRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNA 511

Query: 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            ++  ++ +++      +   L+  M    + P  SI  +  +LL+K
Sbjct: 512 QVYNAIIDAYVEHGPNDQAFILVEKMKSNGISP--SI--VTYNLLIK 554



 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 7/216 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN V+Y +I++  CK G + +A  +   M  +++ PN   YN++I  +      ++A  
Sbjct: 473 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 532

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M   G+   +VT+N+++  LC   ++ EA  +++ +    + PDA      V+Y  
Sbjct: 533 LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDA------VSYNT 586

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI   C  G +  A +L Q + + G+   V TY+  I  L    ++ +   L+  M    
Sbjct: 587 LISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNN 646

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM-DKRN 227
           V P+  I   ++ ++ +     K  +L + M  KRN
Sbjct: 647 VVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRN 682



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 5/185 (2%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  +   G + D   +N  +        + EA  +L  M + G  P      N  +Y  +
Sbjct: 148 FGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPP-----NAFSYNVV 202

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G+ + G+  +A E+   +T   ++PN +TYN  I        ++    L   M   G+
Sbjct: 203 IAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGL 262

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN + +  L+    R     +   LL  M  + ++P     SI+ D L +N  S   + 
Sbjct: 263 KPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLS 322

Query: 254 QFNRQ 258
            F + 
Sbjct: 323 LFGKS 327


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 128 FNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMH 187

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T++V+++ LCK  KMD+A  + D M+  G+ P      N V +  LIDG C
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVP------NGVTFTTLIDGHC 241

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L P+++TYN  I+ LC    + +AHDL  +M +KG+ P+ +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 301

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV----MPYASILS 236
            +TTL+    ++ +     E  + M +  +    + Y +++S
Sbjct: 302 TYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALIS 343



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 114/211 (54%), Gaps = 6/211 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D A E+F +M D+ + PN VT+ +LI G C     + A  
Sbjct: 192 QPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 251

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +A  L+D M   G++PD       + Y  
Sbjct: 252 IYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK------ITYTT 305

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + + +  +  + V Y   I  LC +E+   A  +  +M   G
Sbjct: 306 LIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVG 365

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           + P+   +T ++  F +K +     +LL+ M
Sbjct: 366 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEM 396



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  + G +D+   L   M    + P+V TY+ LI+G C  +  ++A  
Sbjct: 157 RPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANE 216

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM+D+GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 217 MFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPD------LITYNT 270

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK A +L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 271 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEX 330

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V +T L+    ++       ++LR M    + P     ++I++   K 
Sbjct: 331 IRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKK 383



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 6/176 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +A  L
Sbjct: 228 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDL 287

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MIQ  +R D       VAY  L
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDD------VAYTAL 341

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           I GLC+  +  +A ++ + +   GL P+  TY + I+  C    +     L  +M+
Sbjct: 342 ISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 105/218 (48%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   ++        T   ++              
Sbjct: 52  RSDIYVFSGLITAYLESGFLRDAXECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 111

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK   +  A  + + + + G+RP      ++V++  
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRP------SVVSFNT 165

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  ++G +     L  ++  +G+ P+V TY++ I+ LC + +MD A+++F +M  KG
Sbjct: 166 LMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKG 225

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ + M  +++ P
Sbjct: 226 LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXP 263



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 50/113 (44%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++ L K+   K      + +   G   ++  +NI +H  C +  +  A  +F  +   G
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWG 155

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           + P+ V F TLM  +IR  +  +   L  +M    V P     S++++ L K 
Sbjct: 156 LRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKE 208


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 128/258 (49%), Gaps = 33/258 (12%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P ++TYN IIDG  KEG +D A+ ++ +M    I+PNV+TY SLI+GFC +N  + A  +
Sbjct: 569 PTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKM 628

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------- 122
             +M  +GL+ D+  +  ++   CK + M+ A +    +++ G+ P+             
Sbjct: 629 HDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRN 688

Query: 123 --------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                               C++ I  Y  LIDGL K GKL  A +L   +   G++P++
Sbjct: 689 LNNMEAALNLHKEMINNKIPCDLKI--YTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDI 746

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
             YN+ I+ LCN  Q++ A  +  +M+   + P  +++ TL+    ++    +   L   
Sbjct: 747 FMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDE 806

Query: 223 MDKRNVMPYASILSIIVD 240
           M  + ++P  +   I+V+
Sbjct: 807 MLDKGLVPDDTTYDILVN 824



 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 6/229 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   T+N+II+GLCK G V +A++       ++  P  +TYN +I G+      + AE +
Sbjct: 534 PTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESV 593

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           + EM    +  +V+T+  +++  CK+ KMD A ++ D M + G+      E++I  Y  L
Sbjct: 594 YREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGL------ELDITVYATL 647

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G CK+  ++NA +    L   GL PN + YNI I A  N   M+ A +L  +M    +
Sbjct: 648 IAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKI 707

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             +  I+T+L+   +++ + S  ++L   M  R ++P   + +++++ L
Sbjct: 708 PCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGL 756



 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ V+YN +I G CK+G +D A E+   + +  + PN +TY  L+ G     D   A  +
Sbjct: 464 PSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNM 523

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F +M+  G+     TFN I++ LCK  ++ EA   L+  I+    P +      + Y C+
Sbjct: 524 FDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTS------MTYNCI 577

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           IDG  K G + +A  + + + R+ + PNV+TY   I+  C   +MD A  +  DM+ KG+
Sbjct: 578 IDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGL 637

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
             +  ++ TL+  F +  +     +    + +  + P   + +I++
Sbjct: 638 ELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMI 683



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 126/252 (50%), Gaps = 10/252 (3%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GV   PN   ++ +I+   K G V+KA EL+ +MK   + P V   N L+ GF   N 
Sbjct: 355 EVGVT--PNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNL 412

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              A  L    ++ G+ S VVT+N+++  LC+  K++EA  L D MI  G+ P      +
Sbjct: 413 LENAYLLLDGAVENGIAS-VVTYNIVLLWLCELGKVNEACNLWDKMIGKGITP------S 465

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           +V+Y  +I G CK G + +A E+   +  +GL PN +TY I +         + A ++F 
Sbjct: 466 LVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFD 525

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M   G+ P    F +++    +    S+  + L +  K++ +P +   + I+D  VK E
Sbjct: 526 QMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVK-E 584

Query: 247 ISLNSIPQFNRQ 258
            +++S     R+
Sbjct: 585 GAIDSAESVYRE 596



 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 121/226 (53%), Gaps = 10/226 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VTYN ++  LC+ G V++A  L+ +M  + I P++V+YN +I G C     ++A  + 
Sbjct: 430 SVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVM 489

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             +++ GL+ + +T+ ++M+   K    + A  + D M+  G+ P  +       +  +I
Sbjct: 490 NGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDY------TFNSII 543

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +GLCK+G++  AR+   +  +   +P  +TYN  I     +  +D A  ++ +M    ++
Sbjct: 544 NGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEIS 603

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYASILS 236
           PN + +T+L+  F + N+    +++   M ++    ++  YA++++
Sbjct: 604 PNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIA 649



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 8/242 (3%)

Query: 3   NGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC 62
           NG  E G+  KPN +TY  +++G  K+G  + A  +F QM    I P   T+NS+I+G C
Sbjct: 490 NGIIESGL--KPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLC 547

Query: 63  YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF 122
                +EA       + +      +T+N I+D   K   +D A  +   M +  + P   
Sbjct: 548 KVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISP--- 604

Query: 123 CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182
              N++ Y  LI+G CK  K+  A ++   + R GL  ++  Y   I   C  + M+ A 
Sbjct: 605 ---NVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENAC 661

Query: 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
             F  +   G+ PN +++  ++ ++   N     + L + M    +     I + ++D L
Sbjct: 662 KFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGL 721

Query: 243 VK 244
           +K
Sbjct: 722 LK 723



 Score = 93.6 bits (231), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 117/272 (43%), Gaps = 30/272 (11%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           +  G+ E G V  P+  TY  +I    + G   +A  L  +M D  +  NV    SLI G
Sbjct: 279 LVEGDEELGWV--PSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKG 336

Query: 61  FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +C   D N A  LF E+++ G+  +V  F+V+++   K   +++A  L   M   G++P 
Sbjct: 337 YCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPT 396

Query: 121 AFCE----------------------------INIVAYGCLIDGLCKIGKLKNARELSQS 152
            F                               ++V Y  ++  LC++GK+  A  L   
Sbjct: 397 VFILNFLLKGFRKQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDK 456

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +   G+ P++V+YN  I   C    MD AH++   +   G+ PN + +T LM    +K +
Sbjct: 457 MIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGD 516

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
                 +   M    ++P     + I++ L K
Sbjct: 517 CEHAFNMFDQMVAAGIVPTDYTFNSIINGLCK 548



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 31/234 (13%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GVV  P     N ++  + +   V+ A  LF +M +  I  +  T   L+        
Sbjct: 180 EDGVV--PWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGK 237

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD---------------L 111
             EAE  F +   RGL+ D  ++++++  +C+   +D A++L++                
Sbjct: 238 FVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAA 297

Query: 112 MIQGGVRPDAFCE--------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +I   VR   F E              +N+     LI G C  G + +A  L   +   G
Sbjct: 298 VIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVG 357

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
           + PNV  +++ I        ++KA++L+  M+  G+ P   I   L+  F ++N
Sbjct: 358 VTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQN 411



 Score = 36.6 bits (83), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG 60
           P  + YNT+I G  KEG + +A  L  +M D+ + P+  TY+ L++G
Sbjct: 779 PTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 8/241 (3%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE G+V   ++VTYN +I+G C+ G   KA  L  +M  + I P   TY SLI+  C  N
Sbjct: 390 REKGIVL--DSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRN 447

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              EA+ LF +++ +G++ D+V  N +MD  C    MD A  LL  M +  + PD     
Sbjct: 448 KTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDD---- 503

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
             V Y CL+ GLC  GK + AREL   + R G+ P+ ++YN  I           A  + 
Sbjct: 504 --VTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVR 561

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            +M   G  P  + +  L+    +  +     ELLR M    ++P  S    +++ + K+
Sbjct: 562 DEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSKS 621

Query: 246 E 246
           +
Sbjct: 622 D 622



 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 110/200 (55%), Gaps = 6/200 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   TYNT+I GL  E  ++ A+ L  +++++ I  + VTYN +I+G+C   D  +A  L
Sbjct: 361 PTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFAL 420

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EMM  G++    T+  ++  LC+  K  EA  L + ++  G++PD      +V    L
Sbjct: 421 HDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPD------LVMMNTL 474

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +DG C  G +  A  L + + R  + P+ VTYN  +  LC + + ++A +L  +M+ +G+
Sbjct: 475 MDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGI 534

Query: 194 APNCVIFTTLMPSFIRKNET 213
            P+ + + TL+  + +K +T
Sbjct: 535 KPDHISYNTLISGYSKKGDT 554



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 6/222 (2%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G+   P++V+YN +I G    G ++ A     +M  + + P   TYN+LIHG    N   
Sbjct: 321 GIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIE 380

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            AE L  E+ ++G+  D VT+N++++  C++    +A  L D M+  G++P  F      
Sbjct: 381 AAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQF------ 434

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  LI  LC+  K + A EL + +   G+ P++V  N  +   C    MD+A  L  +M
Sbjct: 435 TYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEM 494

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           +   + P+ V +  LM     + +  +  EL+  M +R + P
Sbjct: 495 DRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKP 536



 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 13/230 (5%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K N  T+N +I+ LCKEG + KAK     M+   I P +VTYN+L+ G+        A  
Sbjct: 223 KSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARM 282

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EM  +G Q D+ T+N I+  +C   +  E  R +  +   G+ PD+      V+Y  
Sbjct: 283 IISEMKSKGFQPDLQTYNPILSWMCNEGRASEVLREMKGI---GLVPDS------VSYNI 333

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G    G L+ A      + + G++P   TYN  IH L  + +++ A  L  ++  KG
Sbjct: 334 LIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKG 393

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSII 238
           +  + V +  ++  + +  +  K   L   M    + P    Y S++ ++
Sbjct: 394 IVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVL 443



 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 116/239 (48%), Gaps = 10/239 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +T+ ++ ++   C+   VD+A E F  MK++  +P   T N ++      N    A   +
Sbjct: 155 STILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFY 214

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M    ++S+V TFN++++ LCK  K+ +A   L +M   G++P       IV Y  L+
Sbjct: 215 ADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKP------TIVTYNTLV 268

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
            G    G+++ AR +   +   G  P++ TYN  +  +CN+    +A ++  +M+  G+ 
Sbjct: 269 QGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNE---GRASEVLREMKGIGLV 325

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEISLNSI 252
           P+ V +  L+       +          M K+ ++P + +  ++I  L ++N+I    I
Sbjct: 326 PDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEI 384



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 104/227 (45%), Gaps = 9/227 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P T T N I+  L +   ++ A   +  M    I  NV T+N +I+  C      +A+  
Sbjct: 189 PKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGF 248

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G++  +VT+N ++       +++ A  ++  M   G +PD      +  Y  +
Sbjct: 249 LGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPD------LQTYNPI 302

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           +  +C  G+   A E+ + +   GL+P+ V+YNI I    N+  ++ A     +M  +G+
Sbjct: 303 LSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGM 359

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P    + TL+     +N+      L+R + ++ ++  +   +I+++
Sbjct: 360 VPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVIN 406


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V YNT+I+G C+ G ++ A   F QMK  +I P+ +TYN+LI+G C A     A+ L
Sbjct: 188 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 247

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM D G+   V TFN ++D   +  ++++   +L  M + G++P      N+V+YG +
Sbjct: 248 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKP------NVVSYGSI 301

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++  CK GK+  A  +   +    ++PN   YN  I A       D+A  L   M+  G+
Sbjct: 302 VNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 361

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           +P+ V +  L+     +++ S+  E++ S+    ++P A
Sbjct: 362 SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDA 400



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 130/266 (48%), Gaps = 31/266 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYN +I+GLCK   +  A++L ++M+D  +NP V T+N+LI  +       +   
Sbjct: 222 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 281

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +  EM + GL+ +VV++  I++  CKN K+ EA  +LD M    V P         DA+ 
Sbjct: 282 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 341

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           E                     +IV Y  LI GLC   ++  A E+  SL+   L+P+ V
Sbjct: 342 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 401

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +YN  I A C    +DKA DL   M   G+      +  L+         +++  L + M
Sbjct: 402 SYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKM 461

Query: 224 DKRNVMPYASILSIIVDLLVK--NEI 247
            + NV+P  +I +I+V+   K  NEI
Sbjct: 462 MQNNVVPSNAIHNIMVEAYSKYGNEI 487



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 118/256 (46%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +YN +I G+ + G    A E+F +M +  + PN +TYN++I G     D      L
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M+  GL+ + +T+NV++  LC+  +M E + LLD M    + PD F           
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 124 -----------------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             + I  Y C  L++GLCK GK+  A E+ QSL  AGL+P  V 
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 192

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I+  C   +++ A   F  M+ + + P+ + +  L+    +    +   +LL  M 
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 225 KRNVMPYASILSIIVD 240
              V P     + ++D
Sbjct: 253 DNGVNPTVETFNTLID 268



 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TYN ++ GLC+ G + +   L  +M  + + P+  TY+ L  G     D      
Sbjct: 82  KPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLS 141

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF + +  G+     T +++++ LCK+ K+  A  +L  ++  G+ P        V Y  
Sbjct: 142 LFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR------VIYNT 195

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C+ G+L+ A      +    + P+ +TYN  I+ LC  E++  A DL ++M+  G
Sbjct: 196 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 255

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P    F TL+ ++ R  +  K   +L  M +  + P       IV+   KN
Sbjct: 256 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 308



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 6/175 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   YN IID   + G  D+A  L  +MK   I+P++VTYN LI G C  +  +EAE +
Sbjct: 328 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 387

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              + +  L  D V++N ++   C    +D+A  L   M + G++        +  Y  L
Sbjct: 388 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS------TVRTYHQL 441

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           I GL   G+L     L Q + +  ++P+   +NI + A        KA DL  +M
Sbjct: 442 ISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 496



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
           G   P+AF      +Y  +I G+ + G+  +A E+   +T   ++PN +TYN  I     
Sbjct: 9   GAPPPNAF------SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIK 62

Query: 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234
              ++    L   M   G+ PN + +  L+    R     +   LL  M  + ++P    
Sbjct: 63  GGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFT 122

Query: 235 LSIIVDLLVKNEISLNSIPQFNR 257
            SI+ D L +N  S   +  F +
Sbjct: 123 YSILFDGLSRNGDSKAMLSLFGK 145


>gi|302818393|ref|XP_002990870.1| hypothetical protein SELMODRAFT_132504 [Selaginella moellendorffii]
 gi|300141431|gb|EFJ08143.1| hypothetical protein SELMODRAFT_132504 [Selaginella moellendorffii]
          Length = 554

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 115/217 (52%), Gaps = 15/217 (6%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
            +C+PN+ TY  ++ GLCK G + +A ELF QM +    P+VV Y ++I G C A   ++
Sbjct: 4   ALCQPNSHTYGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCKARQFDK 63

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIV 128
           A   ++E M+     D+VT++  +D LC   K+D A  LL  +  +G  RPD      +V
Sbjct: 64  A-CSYLEKME---SPDIVTYSAFIDGLCNVGKVDYAFELLKQIQERGNARPD------VV 113

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y   I GLCK G++ NA EL   +   G  PN VTYN  + AL   + +D A  LF +M
Sbjct: 114 LYTIFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMRALAWHKSVDAARRLFTEM 173

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
             KG  P+   +  +   F++    SK +E  R  ++
Sbjct: 174 IRKGCEPDGATYVLISEVFLK----SKSLEDARKFEE 206



 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 100/210 (47%), Gaps = 12/210 (5%)

Query: 48  NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
            PN  TY +L+ G C A    EA  LF +M++R     VV +  ++D LCK R+ D+A  
Sbjct: 7   QPNSHTYGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCKARQFDKACS 66

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL-SQSLTRAGLMPNVVTYN 166
            L+ M      PD      IV Y   IDGLC +GK+  A EL  Q   R    P+VV Y 
Sbjct: 67  YLEKMES----PD------IVTYSAFIDGLCNVGKVDYAFELLKQIQERGNARPDVVLYT 116

Query: 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
           I I  LC   Q+D A +LF  ME  G  PN V + +LM +            L   M ++
Sbjct: 117 IFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMRALAWHKSVDAARRLFTEMIRK 176

Query: 227 NVMPYASILSIIVDLLVKNEISLNSIPQFN 256
              P  +   +I ++ +K++ SL    +F 
Sbjct: 177 GCEPDGATYVLISEVFLKSK-SLEDARKFE 205



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 6/192 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y   I GLCK G VD A ELF +M+D    PN VTYNSL+    +    + A  
Sbjct: 109 RPDVVLYTIFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMRALAWHKSVDAARR 168

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+ +G + D  T+ +I +   K++ +++A +      +  VR +      + AY  
Sbjct: 169 LFTEMIRKGCEPDGATYVLISEVFLKSKSLEDARKF-----EEDVRNECGSLKGLAAYVS 223

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            I+ LC+  KL+ A  + Q++ +  + P V  Y   + A   DE+  +  +L  DM  +G
Sbjct: 224 QINKLCRERKLEEAYRILQTIAK-DMQPTVGMYATLVRAFLRDERAMEVDELVKDMVRRG 282

Query: 193 VAPNCVIFTTLM 204
            + N  ++ TL+
Sbjct: 283 CSINHHLWDTLV 294



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 120 DAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           +A C+ N   YG L+ GLCK G++  A EL Q +      P+VV Y   I  LC   Q D
Sbjct: 3   EALCQPNSHTYGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCKARQFD 62

Query: 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASILSII 238
           KA      ME    +P+ V ++  +       +     ELL+ + +R N  P   + +I 
Sbjct: 63  KACSYLEKME----SPDIVTYSAFIDGLCNVGKVDYAFELLKQIQERGNARPDVVLYTIF 118

Query: 239 VDLLVKNEISLNSIPQFNR 257
           +  L K     N++  F +
Sbjct: 119 IKGLCKAGQVDNAVELFYK 137



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 6/173 (3%)

Query: 16  TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFI 75
            + +++++  LC+ G ++ A EL  +M +  ++P + +Y  LI     A     +  LF 
Sbjct: 361 AMVHSSLVTKLCRRGRLEDAYELHQKMVERGLSPTIKSYKLLIKYHFKAGKAGISRQLFE 420

Query: 76  EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135
           +M          T+ V+++  C+   +DEA   L+  +    +P         +Y  LI 
Sbjct: 421 QMQKVDSPQTQDTYRVLLEGYCQAGMLDEAYGALEETVARQFKPTG------ASYLELIR 474

Query: 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            LC++G+ + A  + Q +   G  P +++YN    A     +   A ++F ++
Sbjct: 475 KLCELGRTEEAHHILQRMVSLGHRPLLLSYNAVFQAYYESGRFANAREVFQEI 527



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P   +Y  +I    K G    +++LF QM+  +      TY  L+ G+C A   +EA   
Sbjct: 394 PTIKSYKLLIKYHFKAGKAGISRQLFEQMQKVDSPQTQDTYRVLLEGYCQAGMLDEAYGA 453

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E + R  +    ++  ++ +LC+  + +EA  +L  M+  G RP       +++Y  +
Sbjct: 454 LEETVARQFKPTGASYLELIRKLCELGRTEEAHHILQRMVSLGHRP------LLLSYNAV 507

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168
                + G+  NARE+ Q + R   +     + IT
Sbjct: 508 FQAYYESGRFANAREVFQEILRLFRIDKARQFPIT 542



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 12/217 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV-----VTYNSLIHGFCYAND 66
           C+ N +TY  II GL + G V KA   F +M  E+  P +     + ++SL+   C    
Sbjct: 318 CEINILTYYEIIRGLVRLGKVSKALAQFQKMV-EHGKPTLSRQMAMVHSSLVTKLCRRGR 376

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
             +A  L  +M++RGL   + ++ +++    K  K   + +L + M Q    P       
Sbjct: 377 LEDAYELHQKMVERGLSPTIKSYKLLIKYHFKAGKAGISRQLFEQM-QKVDSPQ-----T 430

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y  L++G C+ G L  A    +        P   +Y   I  LC   + ++AH +  
Sbjct: 431 QDTYRVLLEGYCQAGMLDEAYGALEETVARQFKPTGASYLELIRKLCELGRTEEAHHILQ 490

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            M   G  P  + +  +  ++      +   E+ + +
Sbjct: 491 RMVSLGHRPLLLSYNAVFQAYYESGRFANAREVFQEI 527



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 38/208 (18%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
             Y + I+ LC+E  +++A  + LQ   +++ P V  Y +L+  F       E + L  +
Sbjct: 219 AAYVSQINKLCRERKLEEAYRI-LQTIAKDMQPTVGMYATLVRAFLRDERAMEVDELVKD 277

Query: 77  M-----------------------------------MDRGLQSDVVTFNVIMDELCKNRK 101
           M                                   ++RG + +++T+  I+  L +  K
Sbjct: 278 MVRRGCSINHHLWDTLVRMLFTSGKLKISLTVAEQALERGCEINILTYYEIIRGLVRLGK 337

Query: 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161
           + +A      M++ G +P    ++ +V +  L+  LC+ G+L++A EL Q +   GL P 
Sbjct: 338 VSKALAQFQKMVEHG-KPTLSRQMAMV-HSSLVTKLCRRGRLEDAYELHQKMVERGLSPT 395

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDME 189
           + +Y + I       +   +  LF  M+
Sbjct: 396 IKSYKLLIKYHFKAGKAGISRQLFEQMQ 423


>gi|255584082|ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527472|gb|EEF29603.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 487

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 7/245 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT+ID   +    + A  L  +M++ +I+P+VVTYNSLI G        E+  L
Sbjct: 70  PDVVTYNTLIDAYSRFVSFNAAYSLLNRMREASISPDVVTYNSLIAGAARNCLLLESLNL 129

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F EM++ G+  DV ++N +M    K  K +EA  +L  +   G+ P   C      +  +
Sbjct: 130 FDEMLNMGIVPDVWSYNTLMHCFFKLGKAEEANEVLRQIFGHGLSP---CP---TTFNIM 183

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLCK G   NA  L +SL + G +P ++TYNI I+ LC D ++  A  +  ++E  G 
Sbjct: 184 INGLCKNGFTSNALMLFRSLKQHGFVPQLITYNILINGLCKDRRLRAARSMLKELETSGY 243

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN + +TT+M    R     + +E+L+ M  +           +V +L+K    L    
Sbjct: 244 VPNAITYTTVMKFCFRSRRFKQGLEILQEMIDKGYTFDGFAYCTVVGVLIKTG-RLEEAT 302

Query: 254 QFNRQ 258
           ++ RQ
Sbjct: 303 EYMRQ 307



 Score =  100 bits (248), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 113/241 (46%), Gaps = 6/241 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           NR       P+ VTYN++I G  +   + ++  LF +M +  I P+V +YN+L+H F   
Sbjct: 96  NRMREASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLMHCFFKL 155

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
               EA  +  ++   GL     TFN++++ LCKN     A  L   + Q G  P     
Sbjct: 156 GKAEEANEVLRQIFGHGLSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFVPQ---- 211

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ Y  LI+GLCK  +L+ AR + + L  +G +PN +TY   +       +  +  ++
Sbjct: 212 --LITYNILINGLCKDRRLRAARSMLKELETSGYVPNAITYTTVMKFCFRSRRFKQGLEI 269

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +M  KG   +   + T++   I+     +  E +R M K  +    +  + +++L  K
Sbjct: 270 LQEMIDKGYTFDGFAYCTVVGVLIKTGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCK 329

Query: 245 N 245
            
Sbjct: 330 Q 330



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 12/241 (4%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           FG    P   T+N +I+GLCK GF   A  LF  +K     P ++TYN LI+G C     
Sbjct: 169 FGHGLSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFVPQLITYNILINGLCKDRRL 228

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
             A  +  E+   G   + +T+  +M    ++R+  +   +L  MI  G   D F     
Sbjct: 229 RAARSMLKELETSGYVPNAITYTTVMKFCFRSRRFKQGLEILQEMIDKGYTFDGF----- 283

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
            AY  ++  L K G+L+ A E  + + + G+  ++ +YN  I+  C    ++ A+ L  +
Sbjct: 284 -AYCTVVGVLIKTGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCKQGNLEAAYQLLDE 342

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS---ILSIIVDLLVK 244
           +E +G+  +    T L+    +      ++   R M   N+M + S    L+ +VD L K
Sbjct: 343 IEKEGLQCDEYTHTILINWMCK---AGNILGARRHMQHMNMMGFDSCLVALNCMVDGLCK 399

Query: 245 N 245
           N
Sbjct: 400 N 400



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 10/170 (5%)

Query: 18  TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77
            Y T++  L K G +++A E   QM    I  ++ +YN+LI+ +C   +   A  L  E+
Sbjct: 284 AYCTVVGVLIKTGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCKQGNLEAAYQLLDEI 343

Query: 78  MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137
              GLQ D  T  ++++ +CK   +  A R +  M   G       +  +VA  C++DGL
Sbjct: 344 EKEGLQCDEYTHTILINWMCKAGNILGARRHMQHMNMMGF------DSCLVALNCMVDGL 397

Query: 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
           CK G++ +A +L +S+     M +  TY+  +H LC + +  +A  L L 
Sbjct: 398 CKNGQIDHAVKLFESMK----MRDSFTYSSLVHNLCKNGRFHRASKLLLS 443



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 6/189 (3%)

Query: 58  IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGV 117
           I   C A + N+AE + I+ +  G+  DVVT+N ++D   +    + A  LL+ M +  +
Sbjct: 44  IASLCKAKELNKAESVIIDGIRLGVLPDVVTYNTLIDAYSRFVSFNAAYSLLNRMREASI 103

Query: 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177
            PD      +V Y  LI G  +   L  +  L   +   G++P+V +YN  +H      +
Sbjct: 104 SPD------VVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLMHCFFKLGK 157

Query: 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237
            ++A+++   +   G++P    F  ++    +   TS  + L RS+ +   +P     +I
Sbjct: 158 AEEANEVLRQIFGHGLSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFVPQLITYNI 217

Query: 238 IVDLLVKNE 246
           +++ L K+ 
Sbjct: 218 LINGLCKDR 226



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 89  FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148
            N+ +  LCK +++++A  ++   I+ GV PD      +V Y  LID   +      A  
Sbjct: 40  LNISIASLCKAKELNKAESVIIDGIRLGVLPD------VVTYNTLIDAYSRFVSFNAAYS 93

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           L   +  A + P+VVTYN  I     +  + ++ +LF +M   G+ P+   + TLM  F 
Sbjct: 94  LLNRMREASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLMHCFF 153

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQK 259
           +  +  +  E+LR +    + P  +  +I+++ L KN  + N++  F   K
Sbjct: 154 KLGKAEEANEVLRQIFGHGLSPCPTTFNIMINGLCKNGFTSNALMLFRSLK 204



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
            +YNT+I+  CK+G ++ A +L  +++ E +  +  T+  LI+  C A +   A      
Sbjct: 318 ASYNTLINLYCKQGNLEAAYQLLDEIEKEGLQCDEYTHTILINWMCKAGNILGARRHMQH 377

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           M   G  S +V  N ++D LCKN ++D A +L + M       D+F       Y  L+  
Sbjct: 378 MNMMGFDSCLVALNCMVDGLCKNGQIDHAVKLFESMKM----RDSF------TYSSLVHN 427

Query: 137 LCKIGKLKNARELSQSLTRAGL 158
           LCK G+   A +L  S  R+G+
Sbjct: 428 LCKNGRFHRASKLLLSCLRSGM 449



 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V  N ++DGLCK G +D A +LF  MK  +      TY+SL+H  C     + A  L + 
Sbjct: 388 VALNCMVDGLCKNGQIDHAVKLFESMKMRD----SFTYSSLVHNLCKNGRFHRASKLLLS 443

Query: 77  MMDRGLQ 83
            +  G++
Sbjct: 444 CLRSGMK 450


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 9/201 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY T+IDG CKEG +D A E+  +M DE +  + VTY +LI G   A    +AE 
Sbjct: 286 KPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAER 345

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EMM+ GLQ D  T+ +++D  CKN  +    + L  M   G  P       IV Y  
Sbjct: 346 ILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNP------GIVTYNV 399

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++G C +G++KNA  L  ++   G+ PN +TYNI +   C   ++    +L      KG
Sbjct: 400 VMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL---KSAKG 456

Query: 193 VAPNCVIFTTLMPSFIRKNET 213
           +  +  ++T+L+  F++K   
Sbjct: 457 MVSDFGVYTSLINEFVKKKSA 477



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+NT++ G+CK   ++ A  L   M    I P+V TY + I G C      +A  
Sbjct: 146 QPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAME 205

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM +RGL  + V    ++D  CK   +     L   M   GV+ D      +VAY  
Sbjct: 206 MFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKAD------LVAYNA 259

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G C++  +K A ++ + + + GL P+ VTY   I   C + ++D A ++  +M  +G
Sbjct: 260 LVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEG 319

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           VA + V +T L+    +   +     +L  M +  + P  +  ++++D   KN
Sbjct: 320 VALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKN 372



 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 10/232 (4%)

Query: 3   NGNREFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI 58
           N N   G++ K    P+  TY   I GLCK G +  A E+F +M +  +NPN V   +LI
Sbjct: 167 NANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLI 226

Query: 59  HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
              C   D      L  EM  RG+++D+V +N +++  C+ R M  A  +++ M + G++
Sbjct: 227 DAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLK 286

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           PD       V Y  LIDG CK G+L  A E+ Q ++  G+  + VTY   I  L    + 
Sbjct: 287 PDK------VTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRS 340

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             A  +  +M   G+ P+   +T ++ +F +  +     + L+ M  +   P
Sbjct: 341 VDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNP 392



 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTV   T+ID  CKEG V    EL  +M    +  ++V YN+L++GFC   D   A  +
Sbjct: 217 PNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDI 276

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GL+ D VT+  ++D  CK  ++D A  +   M   GV       ++ V Y  L
Sbjct: 277 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGV------ALDDVTYTAL 330

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL K G+  +A  +   +  AGL P+  TY + I A C +  +        +M+ KG 
Sbjct: 331 ISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGK 390

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P  V +  +M  F    +      LL +M    V P     +I++D
Sbjct: 391 NPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLD 437



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 6/209 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           V +A   +L + D  + P    +N L+     +     A  +F EM+ RG+Q  VVTFN 
Sbjct: 95  VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 154

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M  +CK   ++ A  L  LM + G+ PD +       YG  I GLCK G++++A E+ +
Sbjct: 155 LMSGMCKASDLNNANALRGLMAKAGIAPDVY------TYGAFIQGLCKTGRIQDAMEMFE 208

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   GL PN V     I A C +  +    +L  +M  +GV  + V +  L+  F R  
Sbjct: 209 EMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVR 268

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +     +++  M K  + P     + ++D
Sbjct: 269 DMKAANDIVEEMRKDGLKPDKVTYTTLID 297


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    +++++GL K G V++A  L  ++ +  ++PN+  YN+LI   C   + +EAE L
Sbjct: 330 PSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELL 389

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M   GL  + VT+++++D  C+  K+D A   L  MI  G++P  +       Y  L
Sbjct: 390 FDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVY------PYNSL 443

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+G CK G +  A  L   +    L P VVTY   +   C+  +++KA  L+ +M  KG+
Sbjct: 444 INGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGI 503

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            P+   FTTL+    R       ++L   M + NV P
Sbjct: 504 VPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKP 540



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 6/214 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY+ +ID  C+ G +D A     +M D  + P+V  YNSLI+G C   D + AE L
Sbjct: 400 PNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESL 459

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM+++ L+  VVT+  +M   C   K+++A RL   M   G+ P      +I  +  L
Sbjct: 460 MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVP------SIYTFTTL 513

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           + GL + G +++A +L   +    + PN VTYN+ I   C +  M KA +   +M  KG+
Sbjct: 514 LSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGI 573

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            P+   +  L+       + S+    +  + K N
Sbjct: 574 VPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGN 607



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 31/249 (12%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N + Y  ++ G C+EG +++A  +   M    ++ ++V Y  LI G     D     
Sbjct: 608 CELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFL 667

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD---------AF 122
            L  EM DRGL+ D V +  ++D   K     EA  + DLMI  G  P+           
Sbjct: 668 GLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGL 727

Query: 123 CEI--------------------NIVAYGCLIDGLCK-IGKLKNARELSQSLTRAGLMPN 161
           C+                     N V YGC +D L K +G +K A EL  ++ + GL+ N
Sbjct: 728 CKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILK-GLLAN 786

Query: 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221
             TYN+ I   C   +M++A +L   M   GV+P+C+ +TT++    R+N+  K IEL  
Sbjct: 787 TATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWN 846

Query: 222 SMDKRNVMP 230
           SM ++ + P
Sbjct: 847 SMTEKGIRP 855



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 8/186 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA-NDGNEA 70
           C PN VTY  +I+GLCK GFV++A+ L  +M+  N  PN VTY   +        D  +A
Sbjct: 713 CVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKA 772

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L   ++ +GL ++  T+N+++   C+  +M+EA+ L+  MI  GV PD       + Y
Sbjct: 773 VELHNAIL-KGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDC------ITY 825

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I  LC+   +K A EL  S+T  G+ P+ V YN  IH  C   +M KA +L  +M  
Sbjct: 826 TTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLR 885

Query: 191 KGVAPN 196
           +G+ PN
Sbjct: 886 QGLKPN 891



 Score =  114 bits (284), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTY +++ G C +G ++KA  L+ +M  + I P++ T+ +L+ G   A    +A  
Sbjct: 469 EPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVK 528

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM +  ++ + VT+NV+++  C+   M +A   L+ MI+ G+ PD +      +Y  
Sbjct: 529 LFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTY------SYRP 582

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLC  G+   A+     L +     N + Y   +H  C + ++++A  +  DM ++G
Sbjct: 583 LIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRG 642

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
           V  + V +  L+   ++  +    + LL+ M  R + P   I + ++D
Sbjct: 643 VDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMID 690



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 14/220 (6%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   YN++I+G CK G +  A+ L  +M ++ + P VVTY SL+ G+C     N+A  
Sbjct: 434 KPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALR 493

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L+ EM  +G+   + TF  ++  L +   + +A +L   M +  V+P      N V Y  
Sbjct: 494 LYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKP------NRVTYNV 547

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+G C+ G +  A E    +   G++P+  +Y   IH LC   Q  +A  +F+D   KG
Sbjct: 548 MIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKG 606

Query: 193 VAPNC----VIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
              NC    + +T L+  F R+ +  + + + + M  R V
Sbjct: 607 ---NCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGV 643



 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 119/280 (42%), Gaps = 41/280 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG---- 67
           C  N V YN +IDGLCK+  V +A  +   +  + + P+VVTY +L+ G C   +     
Sbjct: 258 CDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGL 317

Query: 68  -------------------------------NEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                                           EA  L   + + G+  ++  +N ++D L
Sbjct: 318 EMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSL 377

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK R  DEA  L D M + G+ P      N V Y  LID  C+ GKL  A      +   
Sbjct: 378 CKGRNFDEAELLFDRMGKIGLCP------NDVTYSILIDMFCRRGKLDTALSFLGEMIDM 431

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P+V  YN  I+  C    +  A  L  +M  K + P  V +T+LM  +  K + +K 
Sbjct: 432 GLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKA 491

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
           + L   M  + ++P     + ++  L +  +  +++  F 
Sbjct: 492 LRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFT 531



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 10/227 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+   Y  +I  LC+   + +AKE+ +QM+    + N+V YN LI G C      EA  
Sbjct: 224 RPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVG 283

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  ++  + L+ DVVT+  ++  LCK ++ +    ++D M++    P         A   
Sbjct: 284 IKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSE------AAVSS 337

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++GL K GK++ A  L + +   G+ PN+  YN  I +LC     D+A  LF  M   G
Sbjct: 338 LVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIG 397

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMD----KRNVMPYASIL 235
           + PN V ++ L+  F R+ +    +  L  M     K +V PY S++
Sbjct: 398 LCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLI 444



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 8/219 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V Y ++ID   K G   +A  ++  M +E   PN VTY ++I+G C A   NEAE 
Sbjct: 679 KPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEI 738

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
           L  +M       + VT+   +D L K    M +A  L + +++G +        N   Y 
Sbjct: 739 LCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLL-------ANTATYN 791

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C+ G+++ A EL   +   G+ P+ +TY   I  LC    + KA +L+  M  K
Sbjct: 792 MLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEK 851

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           G+ P+ V + TL+       E  K  EL   M ++ + P
Sbjct: 852 GIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKP 890



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 6/206 (2%)

Query: 40  LQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99
           + M   ++ P V T ++L+HG         A  LF +M++ G++ DV  +  ++  LC+ 
Sbjct: 181 MMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCEL 240

Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159
           + +  A  ++  M   G      C++NIV Y  LIDGLCK  K+  A  + + L    L 
Sbjct: 241 KDLSRAKEMIVQMEATG------CDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELK 294

Query: 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIEL 219
           P+VVTY   +  LC  ++ +   ++  +M     +P+    ++L+    ++ +  + + L
Sbjct: 295 PDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNL 354

Query: 220 LRSMDKRNVMPYASILSIIVDLLVKN 245
           ++ + +  V P   + + ++D L K 
Sbjct: 355 VKRVAEFGVSPNIFVYNALIDSLCKG 380



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
            R  G    P+ +TY T+I  LC+   V KA EL+  M ++ I P+ V YN+LIHG C A
Sbjct: 811 TRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVA 870

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVT 88
            +  +A  L  EM+ +GL+ +  T
Sbjct: 871 GEMGKATELRNEMLRQGLKPNTET 894



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           +T+  L+P V T +  +H L        A +LF DM   G+ P+  I+T ++ S     +
Sbjct: 183 MTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKD 242

Query: 213 TSKVIELLRSMDKR----NVMPYASILSIIVDLLVKNE 246
            S+  E++  M+      N++PY    ++++D L K +
Sbjct: 243 LSRAKEMIVQMEATGCDVNIVPY----NVLIDGLCKKQ 276



 Score = 38.1 bits (87), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1   MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI 58
           + N   E G+  +P+ V YNT+I G C  G + KA EL  +M  + + PN  T  + I
Sbjct: 844 LWNSMTEKGI--RPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTI 899


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N+  YN +I  LCK+G +D+A  L  +M+ +  NP++ +YN++I+  C      EAE++F
Sbjct: 415 NSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMF 474

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             +++ G+ ++ +T+N I+  L ++ +  +A RL   MI  G      C +++V+Y  LI
Sbjct: 475 ENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG------CSLDVVSYNGLI 528

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             +CK G +  +  L + +   G+ PN V+YNI I  LC + ++  A +L   M  +G+A
Sbjct: 529 KAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLA 588

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           P+ V + TL+    +       + LL  +   NV P     +I++    K
Sbjct: 589 PDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 638



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
            G V + N V +NT+I G   EG + +A EL+  M  +   P+  TY+ L+HG C     
Sbjct: 303 LGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRI 362

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
           + A  L  EM  +G   +VVT+ +++   CKN   D+   LL+ M   G+       +N 
Sbjct: 363 SSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL------TLNS 416

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
             Y  +I  LCK G++  A  L Q +   G  P++ +YN  I+ LCN+EQM++A  +F +
Sbjct: 417 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN 476

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +  +GV  N + + T++ + +R       + L + M
Sbjct: 477 LLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEM 512



 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TY+ ++ GLCK G +  A  L  +M+ +   PNVVTY  ++H FC     ++  
Sbjct: 342 CQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTR 401

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM  +GL  +   +N ++  LCK+ +MDEA  L+  M   G  PD      I +Y 
Sbjct: 402 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD------ICSYN 455

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I  LC   +++ A  + ++L   G++ N +TYN  IHAL  D +   A  L  +M + 
Sbjct: 456 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           G + + V +  L+ +  +     + + LL  M ++ + P     +I++  L K
Sbjct: 516 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 10/217 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V Y T+I  LC +G V +A  L  +M       +V T++ ++ G C      EA 
Sbjct: 206 CVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAA 265

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L   MM +G    V+T+  ++  LC+ R+ DEA  +L      G  P    E+N+V + 
Sbjct: 266 RLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAML------GRVP----ELNVVLFN 315

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G    GKL  A EL +++   G  P+  TY+I +H LC   ++  A  L  +ME K
Sbjct: 316 TVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKK 375

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
           G APN V +T ++ SF +         LL  M  + +
Sbjct: 376 GFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 412



 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 6/217 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VTY  ++   CK G  D  + L  +M  + +  N   YN +I+  C     +EA  L
Sbjct: 379 PNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGL 438

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G   D+ ++N I+  LC N +M+EA  + + +++ GV        N + Y  +
Sbjct: 439 IQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGV------VANGITYNTI 492

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I  L + G+ ++A  L++ +   G   +VV+YN  I A+C D  +D++  L  +M  KG+
Sbjct: 493 IHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGI 552

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            PN V +  L+    ++      +EL + M  + + P
Sbjct: 553 KPNNVSYNILISELCKERRVRDALELSKQMLNQGLAP 589



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 10/235 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  +  T++ ++ G+C  G V +A  L  +M  +   P V+TY  L+ G C     +EA 
Sbjct: 241 CAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEAR 300

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
                M+ R  + +VV FN ++       K+ EAT L + M   G +PDA        Y 
Sbjct: 301 ----AMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAH------TYS 350

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            L+ GLCK+G++ +A  L + + + G  PNVVTY I +H+ C +   D    L  +M  K
Sbjct: 351 ILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 410

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G+  N   +  ++ +  +     + + L++ M  +   P     + I+  L  NE
Sbjct: 411 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNE 465



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
           E GVV   N +TYNTII  L ++G    A  L  +M     + +VV+YN LI   C   +
Sbjct: 479 EEGVVA--NGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN 536

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
            + +  L  EM ++G++ + V++N+++ ELCK R++ +A  L   M+  G+ PD      
Sbjct: 537 VDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD------ 590

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
           IV Y  LI+GLCK+G +  A  L + L    + P+++TYNI I   C    +D A  + L
Sbjct: 591 IVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDA-AMLL 649

Query: 187 DMEVKGVAP 195
           +  +  V P
Sbjct: 650 NRAMAAVCP 658



 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 10/234 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P  +TY  ++ GLC+    D+A+ +  ++ + N    VV +N++I G        EA 
Sbjct: 276 CMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN----VVLFNTVIGGCLAEGKLAEAT 331

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L+  M  +G Q D  T++++M  LCK  ++  A RLL  M + G  P      N+V Y 
Sbjct: 332 ELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAP------NVVTYT 385

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++   CK G   + R L + ++  GL  N   YN  I+ALC D +MD+A  L  +M  +
Sbjct: 386 IVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQ 445

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           G  P+   + T++       +  +   +  ++ +  V+      + I+  L+++
Sbjct: 446 GCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRD 499



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 108/272 (39%), Gaps = 40/272 (14%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYA 64
           R FGV  +P+  +YN ++  L +      A  L+ +M   + + P   T+       C  
Sbjct: 131 RRFGV--QPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRL 188

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              NEA  L   M   G   D V +  ++  LC    + EA  LL+ M+  G      C 
Sbjct: 189 GRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMG------CA 242

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH-- 182
            ++  +  ++ G+C +G+++ A  L   +   G MP V+TY   +  LC   Q D+A   
Sbjct: 243 ADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAM 302

Query: 183 -----------------------------DLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213
                                        +L+  M +KG  P+   ++ LM    +    
Sbjct: 303 LGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRI 362

Query: 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           S  + LLR M+K+   P     +I++    KN
Sbjct: 363 SSAVRLLREMEKKGFAPNVVTYTIVLHSFCKN 394


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 6/234 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + V Y+ I+   CKEG + KAKEL  +M  +  +P+VVTY S++ GFC     ++A+ 
Sbjct: 454 KVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKK 513

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +M     + + VT+   ++ LC+N K  EA +++++  +    P+A      + Y  
Sbjct: 514 MMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNA------ITYSV 567

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++ GL + GKL  A ++ + +   G  PN V  N+ +H+LC D +  +A+ L  +   KG
Sbjct: 568 VVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKG 627

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            A N V FTT++  F +K++    + LL  M   N  P     + ++D L K +
Sbjct: 628 CAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTD 681



 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 6/223 (2%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F   C P+ VTY +++DG C+ G +D+AK++  QM   +  PN VTY + ++G C     
Sbjct: 484 FSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKS 543

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127
            EA  +     +     + +T++V++  L +  K++EA  ++  MI  G  P+   EIN+
Sbjct: 544 LEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPV-EINL 602

Query: 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
                L+  LC+ GK + A +L +     G   NVV +   IH  C  + ++ A  L  D
Sbjct: 603 -----LVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDD 657

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M +    P+ V +T L+ +  + +   +  EL   M ++ ++P
Sbjct: 658 MYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVP 700



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 121/235 (51%), Gaps = 7/235 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDGNEA 70
           C P+ V+Y T++  LC++  +++ +EL  +M+ D  + P+ VTYNSLI        G+EA
Sbjct: 382 CSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEA 441

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             +  E      + D V ++ I+   CK  K+ +A  L+  M   G  PD      +V Y
Sbjct: 442 LEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPD------VVTY 495

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             ++DG C+IGKL  A+++ Q + +    PN VTY   ++ LC + +  +A  +    E 
Sbjct: 496 TSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEE 555

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +   PN + ++ ++    R+ + ++  +++R M  +   P    ++++V  L ++
Sbjct: 556 EWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRD 610



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 107/199 (53%), Gaps = 6/199 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPN VTY T ++GLC+ G   +A+++    ++E   PN +TY+ ++HG       NEA 
Sbjct: 523 CKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEAC 582

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM+ +G   + V  N+++  LC++ K  EA +LL   +  G      C +N+V + 
Sbjct: 583 DVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKG------CAVNVVNFT 636

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G C+   L+ A  L   +      P+ VTY   I AL   +++++A +L + M  +
Sbjct: 637 TVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQ 696

Query: 192 GVAPNCVIFTTLMPSFIRK 210
           G+ P+ V + +++  + RK
Sbjct: 697 GLVPSPVTYRSVIHQYCRK 715



 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 7/245 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN    NT I  L     + KA     +M    I PNVVTYN LI G+C  +  ++A  
Sbjct: 313 EPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAME 372

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM-IQGGVRPDAFCEINIVAYG 131
           L  +M  +G   D V++  +M  LC++++++E   L+  M     + PD       V Y 
Sbjct: 373 LIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDH------VTYN 426

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI  L K G    A E+ Q   +     + V Y+  +HA C + ++ KA +L  +M  K
Sbjct: 427 SLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSK 486

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
           G  P+ V +T+++  F R  +  +  ++++ M K +  P A   +  ++ L +N  SL +
Sbjct: 487 GCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEA 546

Query: 252 IPQFN 256
               N
Sbjct: 547 RKMMN 551



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN +TY+ ++ GL +EG +++A ++  +M  +   PN V  N L+H  C      EA  L
Sbjct: 560 PNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQL 619

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             E M++G   +VV F  ++   C+   ++ A  LLD M      PD       V Y  L
Sbjct: 620 LKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDT------VTYTAL 673

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179
           ID L K  +++ A EL+  + R GL+P+ VTY   IH  C   +++
Sbjct: 674 IDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVE 719



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 13/173 (7%)

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD-AFC--EINIVAYGCL 133
           M  R +Q     F  +M    +  ++ +A ++L LM + GV P+ + C   I+I+  G  
Sbjct: 272 MTRRRIQLCPEAFGFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMG-- 329

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
                   +LK A   ++ +   G+ PNVVTYN  I   CN  Q+D+A +L   M  KG 
Sbjct: 330 -------NELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGC 382

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDK-RNVMPYASILSIIVDLLVKN 245
           +P+ V + T+M    R    +++ EL++ M     ++P     + ++ +L K+
Sbjct: 383 SPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKH 435



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 13/186 (6%)

Query: 74  FIEMMDR--GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR--PDAFCEINIVA 129
           F    DR    + D   + V+++ L K +    A R+L LM +  ++  P+AF       
Sbjct: 232 FFYWADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAF------- 284

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
            G ++    + G+L++A ++   + +AG+ PN+   N  IH L    ++ KA      M 
Sbjct: 285 -GFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMV 343

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249
           + G+APN V +  L+  +   ++  + +EL+  M  +   P       ++ LL +++  L
Sbjct: 344 LIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDK-RL 402

Query: 250 NSIPQF 255
           N I + 
Sbjct: 403 NEIREL 408



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N V + T+I G C++  ++ A  L   M   N +P+ VTY +LI      +   EA 
Sbjct: 628 CAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEAT 687

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L ++M+ +GL    VT+  ++ + C+  ++++  +LL  M+               AY 
Sbjct: 688 ELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDLLKLLKKMLLKSRFQ--------TAYN 739

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174
            +I+ LCK G L+ A  L   + R     +  T ++ + +  N
Sbjct: 740 LVIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLN 782


>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Brachypodium distachyon]
          Length = 684

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 13/226 (5%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           RE GV+  PN VT+NT+I G  K G V  AK +   + +  + P+++T+ SLI+G C+ +
Sbjct: 448 REKGVL--PNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTH 505

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
             ++A   F EM + G++ +  T+NV+M  LC    +++A  LL+ M + G+ PDA+   
Sbjct: 506 QLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAY--- 562

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
              ++   I   C++ K+  AR +  ++ R G++P+  TYN  I ALC++ ++D+A ++ 
Sbjct: 563 ---SFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEIL 619

Query: 186 LDMEVKGVAPNCVIFTTLMP---SFIRKNETSKVIELLRSMDKRNV 228
           L ME  G   +     T +P   +  +  + SK  +L+   ++RNV
Sbjct: 620 LLMESSG--SSATTHHTHLPIVSALTKTGQFSKAGQLMNKYNRRNV 663



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 124/234 (52%), Gaps = 8/234 (3%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
            +YN +ID   K G VDKA E+  +M+++ + PN+VT+N+LI G+    + + A+ +   
Sbjct: 422 TSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKM 481

Query: 77  MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG 136
           +M+ GL  D++TF  +++ LC   ++D+A    + M + GVRP+A        Y  L+  
Sbjct: 482 LMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAH------TYNVLMHA 535

Query: 137 LCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196
           LC  G +  A +L   + + G+ P+  ++N  I + C  +++DKA ++F  M   GV P+
Sbjct: 536 LCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPD 595

Query: 197 CVIFTTLMPSFI--RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248
              + +L+ +    R+ + +K I LL      +   + + L I+  L    + S
Sbjct: 596 NYTYNSLIKALCDERRIDEAKEILLLMESSGSSATTHHTHLPIVSALTKTGQFS 649



 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 6/185 (3%)

Query: 48  NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
           NP    Y  +I         ++A +    M+  GL S V ++N+++D   K   +D+A  
Sbjct: 383 NPGFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAE 442

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           ++  M + GV P      N+V +  LI G  K+G + NA+ + + L   GL+P+++T+  
Sbjct: 443 IIKEMREKGVLP------NLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTS 496

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I+ LC+  Q+D A D F +M   GV PN   +  LM +       +K I+LL  M K  
Sbjct: 497 LINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDG 556

Query: 228 VMPYA 232
           + P A
Sbjct: 557 ITPDA 561



 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 8/237 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           G  C+ +      +I    + G    A E+F+QM    + P+   YN+LI     A   +
Sbjct: 134 GCGCEVSEELLRALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVD 193

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
            A   F +M   G Q D  T+N ++  +C+   +DEA RL+  M   G+RP      N+ 
Sbjct: 194 TAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRP------NVF 247

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
            Y  L+DG C  G+ ++A  +  ++   G+ PN  +Y   +H         KA+ +  + 
Sbjct: 248 TYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHGAFRCLGRHKAYVMLTEW 307

Query: 189 EVKGVAPNCVIFTTLMPSFIRKNETSK-VIELLRSMDKRNVMPYASILSIIVDLLVK 244
             +   P+   +  ++   + KNE +K V+E+ + M+ R  +   +I  I+V   VK
Sbjct: 308 LGREPPPHHSAWQCML-YCLSKNEMAKEVVEVTKKMNSRGYLLDNAIFGIVVSCAVK 363



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P    Y  +I  L       KA     +M  + +   V +YN +I  F  A   ++A  +
Sbjct: 384 PGFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEI 443

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM ++G+  ++VTFN ++    K   +  A  +L ++++ G+ PD      I+ +  L
Sbjct: 444 IKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPD------IITFTSL 497

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I+GLC   +L +A +    +   G+ PN  TYN+ +HALC+   ++KA DL   M+  G+
Sbjct: 498 INGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGI 557

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVD 240
            P+   F   + SF R  +  K   +  +M +  V+P    Y S++  + D
Sbjct: 558 TPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCD 608



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 64/283 (22%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P+  TYNT++ G+C+ G +D+A  L  QM+   I PNV TY  L+ GFC A    +A 
Sbjct: 207 CQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAV 266

Query: 72  YLFIEMMDRGLQSDVVTFNVIM-------------------------------------- 93
           ++F  M ++G+  +  ++  ++                                      
Sbjct: 267 HVFDTMKEKGVSPNEASYRTLVHGAFRCLGRHKAYVMLTEWLGREPPPHHSAWQCMLYCL 326

Query: 94  --DELCK-----NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG----- 141
             +E+ K      +KM+    LLD  I G V   A   + +     L+D   K G     
Sbjct: 327 SKNEMAKEVVEVTKKMNSRGYLLDNAIFGIVVSCAVKCLELSDLCGLLDDFVKKGGNPGF 386

Query: 142 -----------KLKNARELSQSLTRA---GLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187
                        K++ + +  L R    GL+  V +YN+ I        +DKA ++  +
Sbjct: 387 DVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKE 446

Query: 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           M  KGV PN V F TL+  + +         +L+ + +  ++P
Sbjct: 447 MREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIP 489



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 8/232 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+T  YN +I    + G VD A   F QM  +   P+  TYN+L+HG C     +EA  
Sbjct: 173 RPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALR 232

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M   G++ +V T+ +++D  C   + ++A  + D M + GV P      N  +Y  
Sbjct: 233 LVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSP------NEASYRT 286

Query: 133 LIDGLCK-IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           L+ G  + +G+ K    L++ L R    P+   +   ++ L  +E   +  ++   M  +
Sbjct: 287 LVHGAFRCLGRHKAYVMLTEWLGREP-PPHHSAWQCMLYCLSKNEMAKEVVEVTKKMNSR 345

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
           G   +  IF  ++   ++  E S +  LL    K+   P   +  +++  L+
Sbjct: 346 GYLLDNAIFGIVVSCAVKCLELSDLCGLLDDFVKKGGNPGFDVYIMVIKSLL 397



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 6/242 (2%)

Query: 7   EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66
            FG     +      + D L + G    +  L  +++      +     +LI  +     
Sbjct: 97  RFGAHFARDASVRRALEDALWRRGPAVLSAALVAEVRGCGCEVSEELLRALIASWGRLGL 156

Query: 67  GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126
              A  +F++M   GL+     +N ++    +   +D A      M   G +PD F    
Sbjct: 157 AQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCF---- 212

Query: 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
              Y  L+ G+C+ G +  A  L + +  AG+ PNV TY + +   CN  + + A  +F 
Sbjct: 213 --TYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFD 270

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            M+ KGV+PN   + TL+    R     K   +L     R   P+ S    ++  L KNE
Sbjct: 271 TMKEKGVSPNEASYRTLVHGAFRCLGRHKAYVMLTEWLGREPPPHHSAWQCMLYCLSKNE 330

Query: 247 IS 248
           ++
Sbjct: 331 MA 332


>gi|297726211|ref|NP_001175469.1| Os08g0248500 [Oryza sativa Japonica Group]
 gi|255678284|dbj|BAH94197.1| Os08g0248500 [Oryza sativa Japonica Group]
          Length = 1487

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 13   KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
            KP+TVTY+T+I+G CK   ++ A  LF QM    ++PN++TYN ++ G         A+ 
Sbjct: 1239 KPDTVTYSTLINGYCKISRMENALSLFRQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKE 1298

Query: 73   LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            +++ ++ RG+Q ++ T N+++  LCKN    EA ++   +    V+      +    +  
Sbjct: 1299 IYVRIIKRGIQLEISTCNIVLQGLCKNNLTGEALQMFQNLCLMDVK------LETRTFNI 1352

Query: 133  LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            +I  L + G+   +++L  +L+  GL P+VVTY + I  L  D  ++++ +LFL ME  G
Sbjct: 1353 MIGSLLRSGRKDESKDLFAALSANGLAPDVVTYTLMIENLIEDGLLEESDNLFLSMEKNG 1412

Query: 193  VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
              PN  +   ++   ++K E  +    L  +DK +    AS   +++ L+
Sbjct: 1413 CVPNSRMLNCIVRKLLQKGEIGRAGVYLSKIDKNDFSLEASTAELLILLV 1462



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 15   NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
            + +TY+T+IDG C  G +D+A +L   M    + P+ VTY++LI+G+C  +    A  LF
Sbjct: 1206 DVITYSTLIDGYCLAGKMDEAMKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALSLF 1265

Query: 75   IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             +M+  G+  +++T+N+++  L +  +   A  +   +I+ G+      ++ I     ++
Sbjct: 1266 RQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGI------QLEISTCNIVL 1319

Query: 135  DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             GLCK      A ++ Q+L    +     T+NI I +L    + D++ DLF  +   G+A
Sbjct: 1320 QGLCKNNLTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESKDLFAALSANGLA 1379

Query: 195  PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV-DLLVKNEI 247
            P+ V +T ++ + I      +   L  SM+K   +P + +L+ IV  LL K EI
Sbjct: 1380 PDVVTYTLMIENLIEDGLLEESDNLFLSMEKNGCVPNSRMLNCIVRKLLQKGEI 1433



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 67/132 (50%)

Query: 124  EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183
            E++++ Y  LIDG C  GK+  A +L   +   GL P+ VTY+  I+  C   +M+ A  
Sbjct: 1204 EVDVITYSTLIDGYCLAGKMDEAMKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALS 1263

Query: 184  LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243
            LF  M   GV+PN + +  ++    +  +T    E+   + KR +    S  +I++  L 
Sbjct: 1264 LFRQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGIQLEISTCNIVLQGLC 1323

Query: 244  KNEISLNSIPQF 255
            KN ++  ++  F
Sbjct: 1324 KNNLTGEALQMF 1335


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V YNT+I+G C+ G ++ A   F QMK  +I P+ +TYN+LI+G C A     A+ L
Sbjct: 236 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 295

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM D G+   V TFN ++D   +  ++++   +L  M + G++P      N+V+YG +
Sbjct: 296 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKP------NVVSYGSI 349

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++  CK GK+  A  +   +    ++PN   YN  I A       D+A  L   M+  G+
Sbjct: 350 VNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 409

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           +P+ V +  L+     +++ S+  E++ S+    ++P A
Sbjct: 410 SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDA 448



 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 130/266 (48%), Gaps = 31/266 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYN +I+GLCK   +  A++L ++M+D  +NP V T+N+LI  +       +   
Sbjct: 270 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 329

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +  EM + GL+ +VV++  I++  CKN K+ EA  +LD M    V P         DA+ 
Sbjct: 330 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 389

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           E                     +IV Y  LI GLC   ++  A E+  SL+   L+P+ V
Sbjct: 390 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 449

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +YN  I A C    +DKA DL   M   G+      +  L+         +++  L + M
Sbjct: 450 SYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKM 509

Query: 224 DKRNVMPYASILSIIVDLLVK--NEI 247
            + NV+P  +I +I+V+   K  NEI
Sbjct: 510 MQNNVVPSNAIHNIMVEAYSKYGNEI 535



 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 118/256 (46%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +YN +I G+ + G    A E+F +M +  + PN +TYN++I G     D      L
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M+  GL+ + +T+NV++  LC+  +M E + LLD M    + PD F           
Sbjct: 121 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 180

Query: 124 -----------------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             + I  Y C  L++GLCK GK+  A E+ QSL  AGL+P  V 
Sbjct: 181 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 240

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I+  C   +++ A   F  M+ + + P+ + +  L+    +    +   +LL  M 
Sbjct: 241 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 300

Query: 225 KRNVMPYASILSIIVD 240
              V P     + ++D
Sbjct: 301 DNGVNPTVETFNTLID 316



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TYN ++ GLC+ G + +   L  +M  + + P+  TY+ L  G     D      
Sbjct: 130 KPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLS 189

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF + +  G+     T +++++ LCK+ K+  A  +L  ++  G+ P        V Y  
Sbjct: 190 LFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR------VIYNT 243

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C+ G+L+ A      +    + P+ +TYN  I+ LC  E++  A DL ++M+  G
Sbjct: 244 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 303

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P    F TL+ ++ R  +  K   +L  M +  + P       IV+   KN
Sbjct: 304 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 356



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 6/175 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   YN IID   + G  D+A  L  +MK   I+P++VTYN LI G C  +  +EAE +
Sbjct: 376 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 435

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              + +  L  D V++N ++   C    +D+A  L   M + G++        +  Y  L
Sbjct: 436 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS------TVRTYHQL 489

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           I GL   G+L     L Q + +  ++P+   +NI + A        KA DL  +M
Sbjct: 490 ISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 544



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 5/184 (2%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  +   G + D   +N  +        + EA  +L  M + G  P      N  +Y  +
Sbjct: 15  FGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPP-----NAFSYNVV 69

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G+ + G+  +A E+   +T   ++PN +TYN  I        ++    L   M   G+
Sbjct: 70  IAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGL 129

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN + +  L+    R     +   LL  M  + ++P     SI+ D L +N  S   + 
Sbjct: 130 KPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLS 189

Query: 254 QFNR 257
            F +
Sbjct: 190 LFGK 193


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 10/243 (4%)

Query: 6   REFGVVCKP----NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF 61
           R F  V K     N VTYN+++  L ++G +    ELF QMK + +  N +TY  LI   
Sbjct: 223 RAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERL 282

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
            +A    +   L++EM+D  ++ D+VT N ++D L K  +++ A  L   M   G+  D 
Sbjct: 283 GWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADT 342

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
                 V Y  LI+GL + GKL  A  L   +   G  PN++TYN  I +      +  A
Sbjct: 343 ------VTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAA 396

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             LFL+M+ +GVAPN V +++L+  F +   T   I L R M      P     ++++D 
Sbjct: 397 TRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDC 456

Query: 242 LVK 244
           L++
Sbjct: 457 LIR 459



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 6/209 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N +TY  +I+ L   G V+   +L+L+M D +I  ++VT N+++     A     A  LF
Sbjct: 271 NELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELF 330

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            +M  +GL +D VT+N++++ L +  K+D A  LL  M + G  P      NI+ Y  LI
Sbjct: 331 QDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAP------NIITYNTLI 384

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
               K   L  A  L   +   G+ PNVV+Y+  I       + D A  LF +M+ +G  
Sbjct: 385 SSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCP 444

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           PN V +  L+   IR       +E LR M
Sbjct: 445 PNHVTYNLLIDCLIRAGRFGAAMEYLREM 473



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +T  +NT+I    +   ++KA +       E   P   TY+S+I  F    D      
Sbjct: 27  KLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLL 86

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+      D  TFN+++D L K  +++EA  +   M +  V PD +       Y  
Sbjct: 87  MYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYT------YTI 140

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  L  IG++    +L +S+T  G  PN+ TY+  +HA  +  ++D+A D+F  M  KG
Sbjct: 141 LIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKG 200

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELL-RSMDKRNVMPYASILS 236
           + P+ V +  L+ +F +  +  +  + + +S    N + Y S+LS
Sbjct: 201 LQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLS 245



 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 133/313 (42%), Gaps = 61/313 (19%)

Query: 8   FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67
           F +   P+  TY  +I  L   G +D   +LF  M  +   PN+ TY+S++H F  A   
Sbjct: 127 FKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRV 186

Query: 68  NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA-----------------TRLLD 110
           +EA  +F +M+ +GLQ D VT+N+++D   K  +++ A                 + L  
Sbjct: 187 DEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSS 246

Query: 111 LMIQGGVRP--DAFCEI-------NIVAYGCLIDGLCKIGKLKN---------------- 145
           L  +G ++   + F ++       N + Y  LI+ L   G++++                
Sbjct: 247 LGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYD 306

Query: 146 -------------------ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186
                              A EL Q +   GL  + VTYNI I+ L    ++D A  L L
Sbjct: 307 IVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLL 366

Query: 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           +ME  G APN + + TL+ S+ + +  S    L   M +R V P     S +++   K  
Sbjct: 367 EMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAG 426

Query: 247 ISLNSIPQFNRQK 259
            +  +I  F   K
Sbjct: 427 RTDAAISLFREMK 439



 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K + VT N ++D L K G V+ A ELF  MK + +N + VTYN LI+G   A   + A  
Sbjct: 304 KYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGA 363

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L +EM + G   +++T+N ++    K   +  ATRL   M + GV P      N+V+Y  
Sbjct: 364 LLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAP------NVVSYSS 417

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G  K G+   A  L + +   G  PN VTYN+ I  L    +   A +   +M   G
Sbjct: 418 LIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAG 477



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 8/172 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
            +TVTYN +I+GL + G +D A  L L+M++    PN++TYN+LI  +   ++ + A  L
Sbjct: 340 ADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRL 399

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F+EM +RG+  +VV+++ +++   K  + D A  L   M   G      C  N V Y  L
Sbjct: 400 FLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEG------CPPNHVTYNLL 453

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           ID L + G+   A E  + +  AG     VT ++ +      + M++A   F
Sbjct: 454 IDCLIRAGRFGAAMEYLREMRDAGCQMGKVTKSLLVR--IPPQYMEEAQSFF 503



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 6/123 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TYNT+I    K   +  A  LFL+MK+  + PNVV+Y+SLI GF  A   + A 
Sbjct: 373 CAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAI 432

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM   G   + VT+N+++D L +  +   A   L  M       DA C++  V   
Sbjct: 433 SLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREM------RDAGCQMGKVTKS 486

Query: 132 CLI 134
            L+
Sbjct: 487 LLV 489



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 88/213 (41%), Gaps = 6/213 (2%)

Query: 33  DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92
           D  + L   M+ +    +   +N+LIH +  AN   +A          G +    T++ +
Sbjct: 12  DDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSM 71

Query: 93  MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152
           +    K   +     +   M++    PD         +  LID L K  +++ A  +   
Sbjct: 72  IQVFMKGGDVQNGLLMYKQMLKAKFVPDH------TTFNILIDSLAKADQVEEACNVFGD 125

Query: 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212
           + +  + P+V TY I I +L    ++D    LF  M  +G  PN   + ++M +F     
Sbjct: 126 MFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGR 185

Query: 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
             +  ++ + M ++ + P A   +I++D   K 
Sbjct: 186 VDEACDIFQQMVQKGLQPDAVTYNILIDAFGKT 218


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 8/245 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA-NDGNEAEY 72
           P+TVTYN +I G CK G + KA E F  M+ +N+ P+ +TY +LI   CY+  D +    
Sbjct: 253 PDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQA-CYSERDFDTCLS 311

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++EM +RGL+    ++++++  LCK RK  EA  + + M Q G      C  N+  Y  
Sbjct: 312 LYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKG------CRANVAIYTA 365

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G ++ A  L + +   G  P+ VTY++ ++ LC   ++D   +LF     KG
Sbjct: 366 LIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKG 425

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           VA N + + +L+    +         L   M ++     +   + I+D L K+     ++
Sbjct: 426 VAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQAL 485

Query: 253 PQFNR 257
             F R
Sbjct: 486 ALFGR 490



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 120/266 (45%), Gaps = 30/266 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+I     E   D    L+L+M++  +     +Y+ +I G C      EA  
Sbjct: 287 KPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYA 346

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA----------- 121
           +F  M  +G +++V  +  ++D   KN  M+EA RL + M   G  PDA           
Sbjct: 347 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLC 406

Query: 122 -------------FCE-----INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                        FC      IN + Y  LIDGL K G++++A  L + ++  G   +  
Sbjct: 407 KSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSY 466

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            YN  I AL    ++D+A  LF  ME +G       FT L+    ++++  + I+    M
Sbjct: 467 CYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKM 526

Query: 224 DKRNVMP-YASILSIIVDLLVKNEIS 248
             + + P  AS  ++ + L +  +++
Sbjct: 527 IDKGITPTVASFRALAIGLCLCGKVA 552



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 6/183 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY+ +++GLCK G +D   ELF   +++ +  N + Y SLI G   A    +AE 
Sbjct: 392 EPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAEN 451

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM ++G   D   +N I+D L K+ K+D+A  L   M + G      C+  +  +  
Sbjct: 452 LFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG------CDQTVYTFTI 505

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGL K  K + A +    +   G+ P V ++      LC   ++ +A  +  D+   G
Sbjct: 506 LIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMG 565

Query: 193 VAP 195
           + P
Sbjct: 566 IIP 568



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N   Y  +ID   K G +++A  LF +MK+E   P+ VTY+ L++G C +   ++  
Sbjct: 356 CRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGM 415

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF    ++G+  + + +  ++D L K  ++++A  L + M + G   D++C      Y 
Sbjct: 416 ELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYC------YN 469

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +ID L K GK+  A  L   +   G    V T+ I I  L  + + ++A   +  M  K
Sbjct: 470 AIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDK 529

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+ P    F  L        + ++  ++L  +    ++P  +   +I
Sbjct: 530 GITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPETAFEDMI 576



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 110/250 (44%), Gaps = 7/250 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+F V   PN VT+  +     +E      +  F   K +     +  + SLI    ++ 
Sbjct: 106 RKFFVKLSPNFVTF-VLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSA 164

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D  +   +F E+ DRGL       N ++        ++E   +   M + G+ P      
Sbjct: 165 DLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDP------ 218

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           ++  Y  L++GL     +++A ++ + +    ++P+ VTYNI I   C   ++ KA + F
Sbjct: 219 SLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKF 278

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            DME+K V P+ + + TL+ +   + +    + L   M++R +       S+++  L K 
Sbjct: 279 RDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQ 338

Query: 246 EISLNSIPQF 255
              + +   F
Sbjct: 339 RKCMEAYAVF 348


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V YNT+I+G C+ G ++ A   F QMK  +I P+ +TYN+LI+G C A     A+ L
Sbjct: 373 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 432

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM D G+   V TFN ++D   +  ++++   +L  M + G++P      N+V+YG +
Sbjct: 433 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKP------NVVSYGSI 486

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           ++  CK GK+  A  +   +    ++PN   YN  I A       D+A  L   M+  G+
Sbjct: 487 VNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 546

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232
           +P+ V +  L+     +++ S+  E++ S+    ++P A
Sbjct: 547 SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDA 585



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 130/266 (48%), Gaps = 31/266 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TYN +I+GLCK   +  A++L ++M+D  +NP V T+N+LI  +       +   
Sbjct: 407 KPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFI 466

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFC 123
           +  EM + GL+ +VV++  I++  CKN K+ EA  +LD M    V P         DA+ 
Sbjct: 467 VLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYV 526

Query: 124 E--------------------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
           E                     +IV Y  LI GLC   ++  A E+  SL+   L+P+ V
Sbjct: 527 EHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAV 586

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           +YN  I A C    +DKA DL   M   G+      +  L+         +++  L + M
Sbjct: 587 SYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKM 646

Query: 224 DKRNVMPYASILSIIVDLLVK--NEI 247
            + NV+P  +I +I+V+   K  NEI
Sbjct: 647 MQNNVVPSNAIHNIMVEAYSKYGNEI 672



 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 118/256 (46%), Gaps = 29/256 (11%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN  +YN +I G+ + G    A E+F +M +  + PN +TYN++I G     D      L
Sbjct: 198 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 257

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC---------- 123
             +M+  GL+ + +T+NV++  LC+  +M E + LLD M    + PD F           
Sbjct: 258 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 317

Query: 124 -----------------EINIVAYGC--LIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164
                             + I  Y C  L++GLCK GK+  A E+ QSL  AGL+P  V 
Sbjct: 318 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 377

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN  I+  C   +++ A   F  M+ + + P+ + +  L+    +    +   +LL  M 
Sbjct: 378 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 437

Query: 225 KRNVMPYASILSIIVD 240
              V P     + ++D
Sbjct: 438 DNGVNPTVETFNTLID 453



 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KPN +TYN ++ GLC+ G + +   L  +M  + + P+  TY+ L  G     D      
Sbjct: 267 KPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLS 326

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF + +  G+     T +++++ LCK+ K+  A  +L  ++  G+ P        V Y  
Sbjct: 327 LFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR------VIYNT 380

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI+G C+ G+L+ A      +    + P+ +TYN  I+ LC  E++  A DL ++M+  G
Sbjct: 381 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 440

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           V P    F TL+ ++ R  +  K   +L  M +  + P       IV+   KN
Sbjct: 441 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 493



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 6/175 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN   YN IID   + G  D+A  L  +MK   I+P++VTYN LI G C  +  +EAE +
Sbjct: 513 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 572

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              + +  L  D V++N ++   C    +D+A  L   M + G++        +  Y  L
Sbjct: 573 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKS------TVRTYHQL 626

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188
           I GL   G+L     L Q + +  ++P+   +NI + A        KA DL  +M
Sbjct: 627 ISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 681



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 5/184 (2%)

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  +   G + D   +N  +        + EA  +L  M + G  P      N  +Y  +
Sbjct: 152 FGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPP-----NAFSYNVV 206

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G+ + G+  +A E+   +T   ++PN +TYN  I        ++    L   M   G+
Sbjct: 207 IAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGL 266

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253
            PN + +  L+    R     +   LL  M  + ++P     SI+ D L +N  S   + 
Sbjct: 267 KPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLS 326

Query: 254 QFNR 257
            F +
Sbjct: 327 LFGK 330


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 8/235 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKD--ENINPNVVTYNSLIHGFCYANDGNEAE 71
           PN +T NTII GLC+ G V  A E F + +        N VTY++L   F + N+ + A 
Sbjct: 273 PNVITMNTIIGGLCRVGRVGAALEFFREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAM 332

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF EM D G + D V +  ++  L       +A RLLD          A  +++  AY 
Sbjct: 333 ELFHEMADHGHRPDAVMYFTMISGL------TQAGRLLDACTTAASMKKAGFKLDAKAYN 386

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LI G C+  KL  A EL + +   GL P+V TYN  +  LC         +L   M   
Sbjct: 387 ILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDD 446

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
           G  P+ V F TL+  + +  +T + + + RSMD+  + P   I + ++D L K+ 
Sbjct: 447 GCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSR 501



 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 6/230 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V Y T+I GL + G +  A      MK      +   YN LI GFC     +EA  
Sbjct: 344 RPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYE 403

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM   GLQ DV T+N ++  LCK         LL  MI  G      C+ ++V +G 
Sbjct: 404 LLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDG------CQPSVVTFGT 457

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L+ G CK GK   A  + +S+  A + PN V YN  I  LC   ++D A  LF +M  K 
Sbjct: 458 LVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKN 517

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
           V  N   +  L+     K    K  EL+  M +    P    + ++++ L
Sbjct: 518 VPANVTTYNALLKGLQDKKMAEKAFELMDRMREERCTPNYVTVDVLMEWL 567



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K +   YN +I G C++  + +A EL  +MK   + P+V TYN+L+ G C A D +  + 
Sbjct: 379 KLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDE 438

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L   M+D G Q  VVTF  ++   CK  K DEA R+   M +  ++P      N V Y  
Sbjct: 439 LLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQP------NTVIYNT 492

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID LCK  ++  A +L   +    +  NV TYN  +  L + +  +KA +L   M  + 
Sbjct: 493 LIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQDKKMAEKAFELMDRMREER 552

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
             PN V    LM       ET ++   ++  D+++
Sbjct: 553 CTPNYVTVDVLMEWLPEIGETERLKCFMQQRDQKD 587



 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 112/237 (47%), Gaps = 12/237 (5%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   +N+++  L + G +    ELF  M+D ++ P+VVTY  L++G C +    +A  +
Sbjct: 129 PDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKV 188

Query: 74  FIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
              M   G  +  D+   N ++D LCK  ++ +A   +D  +    R    C  N V Y 
Sbjct: 189 LDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERM----RHVHGCAPNAVTYN 244

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
           CL D  C++G +  A ++   + + G+ PNV+T N  I  LC   ++  A + F   E +
Sbjct: 245 CLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFF--REKR 302

Query: 192 GVAP----NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            V P    N V ++TL  +F+  N     +EL   M      P A +   ++  L +
Sbjct: 303 TVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQ 359



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 6/164 (3%)

Query: 9   GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68
           GV  +P+  TYNT++ GLCK G      EL   M D+   P+VVT+ +L+HG+C A   +
Sbjct: 410 GVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTD 469

Query: 69  EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           EA  +F  M +  +Q + V +N ++D LCK+R++D A +L D M +  V        N+ 
Sbjct: 470 EALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNV------PANVT 523

Query: 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
            Y  L+ GL      + A EL   +      PN VT ++ +  L
Sbjct: 524 TYNALLKGLQDKKMAEKAFELMDRMREERCTPNYVTVDVLMEWL 567



 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 12/208 (5%)

Query: 49  PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108
           P++  +NSL+     A +      LF  M D  ++ DVVT+ ++++ LCK+  + +A ++
Sbjct: 129 PDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKV 188

Query: 109 LDLMIQGG--VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR--AGLMPNVVT 164
           LD M   G  V PD      I     ++DGLCKIG+L+ A        R   G  PN VT
Sbjct: 189 LDRMSSPGSDVCPD------IAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVT 242

Query: 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224
           YN    A C    +  A  +   ME +GVAPN +   T++    R       +E  R  +
Sbjct: 243 YNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFFR--E 300

Query: 225 KRNVMPYASILSIIVDLLVKNEISLNSI 252
           KR V P A   ++    L    +  N++
Sbjct: 301 KRTVWPEARGNAVTYSTLASAFLHCNNV 328



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 113/303 (37%), Gaps = 82/303 (27%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMK----------------------------- 43
           KP+ VTY  +++GLCK G V  A ++  +M                              
Sbjct: 163 KPDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQA 222

Query: 44  ----DENIN------PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93
               DE +       PN VTYN L   FC   D   A  +   M   G+  +V+T N I+
Sbjct: 223 IIFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTII 282

Query: 94  DELCKNRK-------------------------------------MDEATRLLDLMIQGG 116
             LC+  +                                     +D A  L   M   G
Sbjct: 283 GGLCRVGRVGAALEFFREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHG 342

Query: 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176
            RPDA      V Y  +I GL + G+L +A   + S+ +AG   +   YNI I   C  +
Sbjct: 343 HRPDA------VMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKK 396

Query: 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236
           ++ +A++L  +M+  G+ P+   + TL+    +  + S V ELL  M      P      
Sbjct: 397 KLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFG 456

Query: 237 IIV 239
            +V
Sbjct: 457 TLV 459


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 125/233 (53%), Gaps = 6/233 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+      +E   L   M 
Sbjct: 139 FNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMH 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G Q DV T++V+++ LCK  KMDEA  L D M++ G+ P      N V +  LIDG C
Sbjct: 199 ASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K GKL  A E+ + +   GL P+++TYN  I+  C    + +  DL  +M +KG+ P+ +
Sbjct: 253 KNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251
            +TTL+    ++ +     E  + M + N+     + + ++  L K   S+++
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDA 365



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ V++NT+++G  K G +D+   L   M      P+V TY+ LI+G C  +  +EA  
Sbjct: 168 KPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+++GL  + VTF  ++D  CKN K+D A  +   ++  G+ PD      ++ Y  
Sbjct: 228 LFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G CK G LK  R+L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  + V++T L+    ++  +    ++LR M    + P +   +I+++   KN
Sbjct: 342 IRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKN 394



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G +D A E++ Q+  + ++P+++TYN+LI+GFC   D  +   L
Sbjct: 239 PNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D       V Y  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDD------VVYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLCK G+  +A ++ + +   GL P+  TY I ++  C +  ++    L  +M+  G 
Sbjct: 353 ISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGH 412

Query: 194 APNCV 198
            P+ V
Sbjct: 413 VPSVV 417



 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TY+ +I+GLCKE  +D+A ELF +M ++ + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +++ +GL  D++T+N ++   CK   + +   L+D M   G++PD       + Y  
Sbjct: 263 IYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + +    +  + V Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P+   +T +M  F +  + +   +LL+ M +   +P
Sbjct: 377 LKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVP 414



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 88/158 (55%), Gaps = 6/158 (3%)

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E+++ G  + +  FN++M   CK  ++  A  + D + + G++P      ++V++  
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  K+G L     L  ++  +G  P+V TY++ I+ LC + +MD+AH+LF +M  KG
Sbjct: 177 LMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +  +    +E+ + +  + + P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSP 274



 Score = 44.3 bits (103), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%)

Query: 17  VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76
           V Y  +I GLCKEG    A+++  +M    + P+  TY  +++ FC   D N    L  E
Sbjct: 347 VVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKE 406

Query: 77  MMDRGLQSDVVT 88
           M   G    VVT
Sbjct: 407 MQRDGHVPSVVT 418



 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 49/112 (43%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           ++D L K+   K      + +   G   ++  +NI +H  C + ++  A  +F  +   G
Sbjct: 107 VLDHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +I+     +   L  +M      P     S++++ L K
Sbjct: 167 LKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCK 218


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ V+Y T++  LCK   + +  ++  +M+D  +  + VTYN+LIH  C     +EA 
Sbjct: 219 CSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEAL 278

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               E   RG Q D V ++ I+D  CK  +MD+A  +++ M   G  PD      +V Y 
Sbjct: 279 QFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPD------VVTYT 332

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I+G  + G++  AR++ Q + + G  PN V+Y   +  LC      +A ++    E +
Sbjct: 333 AIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQ 392

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
              PN + ++ +M  F R+ + S   +++R M  +   P    +++++  L +
Sbjct: 393 WWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCR 445



 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 6/226 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N  F   C P+ VTY  II+G  + G V +A+++  QM      PN V+Y + + G C  
Sbjct: 317 NEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQK 376

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
            + +EA  +     ++    + +T++V+M    +  K+ +A  ++  MI  G  P    E
Sbjct: 377 GNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPV-E 435

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
           IN+     L+  LC+IG++  A++  +     G   N V +   IH  C  + ++ A  L
Sbjct: 436 INL-----LLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSL 490

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             DM +    P+ V +TT++ +  +K    +  EL   M K+ + P
Sbjct: 491 LDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDP 536



 Score =  103 bits (258), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 29/256 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +  NT I  L     ++KA     +M+   I PNVVTYN LI G+C  +   +A  
Sbjct: 150 EPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAME 209

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA---------TRLLDLMIQGGVRPDAFC 123
           L  EM  +G   D V++  +M  LCKNR++ E          T+LL   +         C
Sbjct: 210 LISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLC 269

Query: 124 --------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                               +++ V Y  ++D  CK G++  A+E+   +   G +P+VV
Sbjct: 270 KHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVV 329

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
           TY   I+      ++ +A  +   M   G  PN V +T  +    +K  +S+  E++++ 
Sbjct: 330 TYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKAS 389

Query: 224 DKRNVMPYASILSIIV 239
           +++   P A   S+++
Sbjct: 390 EEQWWTPNAITYSVVM 405



 Score =  103 bits (257), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 112/214 (52%), Gaps = 9/214 (4%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTV+Y   + GLC++G   +A+E+    +++   PN +TY+ ++HGF      ++A 
Sbjct: 359 CKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDAC 418

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  EM+ +G     V  N+++  LC+  ++DEA + ++  +  G      C +N V + 
Sbjct: 419 DVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMG------CAVNAVNFT 472

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I   C+   ++ A  L   +  +   P+ VTY   I AL    ++++A +L L M  K
Sbjct: 473 TVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKK 532

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           G+ P  V + T++    R  +  +V +LL  +DK
Sbjct: 533 GIDPTPVTYRTVIH---RYGQIGRVEDLLNLLDK 563



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + + + Y  ++D L K      A+ +   M    I      +  ++  +  A     A  
Sbjct: 80  RHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQ 139

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +   M   G++ +++  N  +  L     +++A R L+ M   G+ P      N+V Y C
Sbjct: 140 VLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMP------NVVTYNC 193

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI G C + ++++A EL   +   G  P+ V+Y   +  LC + ++ +  D+   ME   
Sbjct: 194 LIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTK 253

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           +  + V + TL+    +     + ++ LR   KR         S IVD   K
Sbjct: 254 LLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCK 305



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 87/178 (48%), Gaps = 7/178 (3%)

Query: 81  GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140
           G+Q     F  +M    +  K+  A ++L +M + G+ P      N++     I  L   
Sbjct: 113 GIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMMQKAGIEP------NLLVCNTAIHVLVMA 166

Query: 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200
             L+ A    + +   G+MPNVVTYN  I   C+  +++ A +L  +M +KG +P+ V +
Sbjct: 167 NMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSY 226

Query: 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258
            T+M    +     +V++++  M+   ++      + ++ +L K++ +  ++ QF R+
Sbjct: 227 YTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEAL-QFLRE 283



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 8/146 (5%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C  N V + T+I   C++  ++ A  L   M   N +P+ VTY ++I          EA 
Sbjct: 464 CAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEAT 523

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L ++M+ +G+    VT+  ++    +  ++++   LLD M+       AF ++      
Sbjct: 524 ELTLKMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKMLTRQECRTAFNQV------ 577

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAG 157
             I+ LC  G L+ A +L   + R  
Sbjct: 578 --IEKLCTFGNLEAADKLLGKVLRTA 601


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+   YN +I G CK   VD A ++  +MK     P+VVTYN LI  FC     + A  
Sbjct: 143 KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALR 202

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  +++    +  V+T+ ++++       +DEA +LLD M+  G+RPD +       Y  
Sbjct: 203 VMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRY------TYNV 256

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++G+CK G L  A E    +++ G +  V TYNI +  L N+ + +    L  DM VKG
Sbjct: 257 VVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKG 316

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             PN + ++TL+ +  R  +  +   +L+ M ++ + P
Sbjct: 317 CEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAP 354



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 121/242 (50%), Gaps = 11/242 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYN +++G+CKEG +D+A E   ++        V TYN L+            E 
Sbjct: 248 RPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEK 307

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  +M+ +G + + +T++ ++  LC++ K+DEA  +L +M +  + PD +      +Y  
Sbjct: 308 LMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGY------SYDP 361

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  LC+ GK+  A E    +   G +P++++YN  + +LC +   D+A ++F  +   G
Sbjct: 362 LISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVG 421

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIV-DLLVKNEI 247
             PN   + TL  +     +  + + ++  M    + P    Y S++S +  D LV   I
Sbjct: 422 CPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAI 481

Query: 248 SL 249
            L
Sbjct: 482 EL 483



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 7/229 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+PN +TY+T+I  LC++G +D+AK +   MK++ + P+  +Y+ LI   C     + A 
Sbjct: 317 CEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAI 376

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
               +M+  G   D++++N I+  LCKN   DEA  + + + + G  P+A       +Y 
Sbjct: 377 EFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNA------GSYN 430

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-EV 190
            L   L   G    A  +   +   G+ P+ +TYN  I  LC D  +D+A +L +DM E 
Sbjct: 431 TLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFES 490

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           +   P  + + T++    +       IE+L +M     +P  +  ++++
Sbjct: 491 EKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLI 539



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 87/159 (54%), Gaps = 5/159 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ ++YN+I+  LCK G  D+A  +F ++ +    PN  +YN+L      + D   A  +
Sbjct: 389 PDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGM 448

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
            +EM+  G+  D +T+N ++  LC++  +D+A  LL  M +        C+  +++Y  +
Sbjct: 449 ILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFES-----EKCQPTVISYNTV 503

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172
           + GLCK+ ++ +A E+  ++   G +PN  TY + I  +
Sbjct: 504 LLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGI 542



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 92/183 (50%), Gaps = 7/183 (3%)

Query: 62  CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121
           C +   +E+ Y    M++RG + DV+    ++      +K+++A ++++++ + G +PD 
Sbjct: 88  CKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG-KPDV 146

Query: 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
           F      AY  +I G CK  ++ +A ++   + + G  P+VVTYNI I   C   ++D A
Sbjct: 147 F------AYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLA 200

Query: 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241
             +   +      P  + +T L+ + I +    + ++LL  M  R + P     +++V+ 
Sbjct: 201 LRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNG 260

Query: 242 LVK 244
           + K
Sbjct: 261 MCK 263



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 7/145 (4%)

Query: 10  VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           V C PN  +YNT+   L   G   +A  + L+M    I+P+ +TYNSLI   C     ++
Sbjct: 420 VGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQ 479

Query: 70  AEYLFIEMMD-RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128
           A  L ++M +    Q  V+++N ++  LCK +++ +A  +L  M+  G  P      N  
Sbjct: 480 AIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLP------NET 533

Query: 129 AYGCLIDGLCKIGKLKNARELSQSL 153
            Y  LI G+   G   +A EL+  L
Sbjct: 534 TYTLLIQGIGFAGWRYDAMELANLL 558


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 116/210 (55%), Gaps = 6/210 (2%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           +N ++   CKEG +  A+ +F  +    + P+VV++N+L++G+    D +E   L   M 
Sbjct: 139 FNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 79  DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138
             G+Q DV T +V+++ LCK  KMD+A  L D M+  G+ P      N V +  LIDG C
Sbjct: 199 ASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVP------NGVTFTTLIDGHC 252

Query: 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198
           K G++  A E+ + +    L+P+++TYN  I+ LC    + +  DL  +M +KG+ P+ +
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKI 312

Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            +TTL+    ++ +     E  + M K N+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENI 342



 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 6/185 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PN VT+ T+IDG CK G VD A E++ QM  +++ P+++TYN+LI+G C   D  +   L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDL 298

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +GL+ D +T+  ++D  CK   ++ A      MI+  +R D        AY  L
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDD------XAYTAL 352

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GLC+ G+  +A ++ + +   GL P + TY + I+  C    +     L  +M+  G 
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGY 412

Query: 194 APNCV 198
            PN V
Sbjct: 413 XPNXV 417



 Score =  113 bits (282), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  T++ +I+GLCKE  +D A ELF +M B  + PN VT+ +LI G C     + A  
Sbjct: 203 QPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           ++ +M+ + L  D++T+N ++  LCK   + +   L+D M   G++PD       + Y  
Sbjct: 263 IYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDK------ITYTT 316

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDG CK G L+ A E  + + +  +  +   Y   I  LC + +   A  +  +M   G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + P    +T ++  F +K +     +LL+ M +    P
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXP 414



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ V++NT+++G  K G +D+   L   M+   + P+V T++ LI+G C  +  ++A  
Sbjct: 168 RPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANE 227

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM+B GL  + VTF  ++D  CKN ++D A  +   M+   + PD      ++ Y  
Sbjct: 228 LFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD------LITYNT 281

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI GLCK G LK   +L   ++  GL P+ +TY   I   C +  ++ A +    M  + 
Sbjct: 282 LIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKEN 341

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           +  +   +T L+    ++  +    ++LR M    + P     ++I++   K 
Sbjct: 342 IRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394



 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           + +   ++ +I    + GF+  A E +   K+        T   +I              
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWG 122

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            + E ++ G  + +  FN++M   CK  ++  A  + D + + G+RP      ++V++  
Sbjct: 123 FYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRP------SVVSFNT 176

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G  KIG L     L   +  +G+ P+V T+++ I+ LC + +MD A++LF +M   G
Sbjct: 177 LMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNG 236

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           + PN V FTTL+    +       +E+ R M  ++++P
Sbjct: 237 LVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLP 274



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 62/108 (57%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+IDG CKEG ++ A E   +M  ENI  +   Y +LI G C      +AE 
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEK 367

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           +  EM+  GL+ ++ T+ +I++E CK   +   ++LL  M + G  P+
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPN 415



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%)

Query: 19  YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78
           Y  +I GLC+EG    A+++  +M    + P + TY  +I+ FC   D      L  EM 
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408

Query: 79  DRGLQSDVVT 88
             G   + VT
Sbjct: 409 RXGYXPNXVT 418



 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 49/112 (43%)

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+ L K+   K      +     G   ++  +NI +H  C + ++  A  +F  +   G
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWG 166

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           + P+ V F TLM  +I+  +  +   L   M    V P     S++++ L K
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCK 218


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 128/295 (43%), Gaps = 64/295 (21%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  VTYN +I GL + G V+ A+  F +M+   + P+V+TYNSL++G+C A +  EA  L
Sbjct: 308 PTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLL 367

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL------------------------- 108
           F ++   GL   V+T+N+ +D  C+   ++EA  L                         
Sbjct: 368 FGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLN 427

Query: 109 ----------LDLMIQGGVRPDAFC-----------------------------EINIVA 129
                      D M+  G++PD F                                + V 
Sbjct: 428 VCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVT 487

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           Y  LI GLCK G LK+A+EL   +   GL P+ +TY   IHA C    + +A  +F +M 
Sbjct: 488 YNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMI 547

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
             G+ P+ V FT ++ ++ R+          R M +  V P     ++++  L +
Sbjct: 548 SDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCR 602



 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 6/207 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           K ++ TYN +I GL   G V K  +L L+M++E I P VVTYN++IHG   +     A+ 
Sbjct: 272 KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQV 331

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
            F EM   GL  DV+T+N +++  CK   + EA  L   + + G+ P       ++ Y  
Sbjct: 332 KFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAP------TVLTYNI 385

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
            IDG C++G L+ AR L + +   G +PNV TY I +    N   +  A + F +M  KG
Sbjct: 386 RIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKG 445

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIEL 219
           + P+C  + T + + +   + ++ +EL
Sbjct: 446 LQPDCFAYNTRICAELILGDIARALEL 472



 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 41/262 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  +TYN  IDG C+ G +++A+ L  +M ++   PNV TY  L+ G         A   
Sbjct: 378 PTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREF 437

Query: 74  FIEMMDRGLQ-----------------------------------SDVVTFNVIMDELCK 98
           F EM+ +GLQ                                   SD VT+N+++  LCK
Sbjct: 438 FDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCK 497

Query: 99  NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158
              + +A  L   M+  G++PD       + Y CLI   C+ G L+ AR++  ++   GL
Sbjct: 498 TGNLKDAKELQMKMVSNGLQPDC------ITYTCLIHAHCERGLLREARKIFNNMISDGL 551

Query: 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
           +P+ VT+ + IHA C    +  A+  F  M  +GV PN + +  L+ +  R   T     
Sbjct: 552 LPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASH 611

Query: 219 LLRSMDKRNVMPYASILSIIVD 240
               M +R ++      ++++D
Sbjct: 612 HFHEMLERGLVANKYTYTLLID 633



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 6/193 (3%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           +TVTYN +I GLCK G +  AKEL ++M    + P+ +TY  LIH  C      EA  +F
Sbjct: 484 DTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIF 543

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M+  GL    VTF VI+   C+   +  A      M++ GV P      N + Y  LI
Sbjct: 544 NNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP------NEITYNVLI 597

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
             LC++G+ + A      +   GL+ N  TY + I   C     + A   + +M   G+ 
Sbjct: 598 HALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIH 657

Query: 195 PNCVIFTTLMPSF 207
           P+ +    L+  F
Sbjct: 658 PDYLTHKALVKGF 670



 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 12/221 (5%)

Query: 13  KPNTVTYNTIIDGLCKE---GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE 69
           +P+   YNT I   C E   G + +A EL   +  E I+ + VTYN LIHG C   +  +
Sbjct: 447 QPDCFAYNTRI---CAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKD 503

Query: 70  AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129
           A+ L ++M+  GLQ D +T+  ++   C+   + EA ++ + MI  G+ P A      V 
Sbjct: 504 AKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSA------VT 557

Query: 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189
           +  +I   C+ G L +A    + +   G+ PN +TYN+ IHALC   +   A   F +M 
Sbjct: 558 FTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEML 617

Query: 190 VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
            +G+  N   +T L+    +       +     M +  + P
Sbjct: 618 ERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHP 658



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 9/229 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNEA 70
           +P+ VTYNT++D   KEG  DK   L  +M+       PN VTYN +I G     D  EA
Sbjct: 201 EPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEA 260

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             L +E M    ++   T+N ++  L     + +   L   M   G+ P       +V Y
Sbjct: 261 AEL-VEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMP------TVVTY 313

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I GL + G ++ A+     +   GL+P+V+TYN  ++  C    + +A  LF D+  
Sbjct: 314 NAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRR 373

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
            G+AP  + +   +  + R  +  +   L   M ++  +P     +I++
Sbjct: 374 AGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILM 422



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VT+  II   C+ G +  A   F +M +E + PN +TYN LIH  C       A + 
Sbjct: 553 PSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHH 612

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120
           F EM++RGL ++  T+ +++D  CK    ++A R    M Q G+ PD
Sbjct: 613 FHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPD 659



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 11/230 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+    N ++  L      D    +  +M    I P++VTYN+L+  F      ++   L
Sbjct: 167 PDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAML 226

Query: 74  FIEMMDRG---LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
             EM  RG   L +DV T+NV++  L +   ++EA  L++     G+R     + +   Y
Sbjct: 227 LKEMETRGSGCLPNDV-TYNVVITGLTRKGDLEEAAELVE-----GMRLSK--KASSFTY 278

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             LI GL   G +K   +L   +   G+MP VVTYN  IH L     ++ A   F +M  
Sbjct: 279 NPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRA 338

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            G+ P+ + + +L+  + +     + + L   + +  + P     +I +D
Sbjct: 339 MGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRID 388



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +PN +TYN +I  LC+ G    A   F +M +  +  N  TY  LI G C   +  +A  
Sbjct: 587 EPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMR 646

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115
            + EM   G+  D +T   ++     +  +      LD++I G
Sbjct: 647 FYFEMHQNGIHPDYLTHKALVKGF--DGHVHHTIEYLDIVILG 687



 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 39/77 (50%)

Query: 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210
           + +   G+ P+V   N  + AL +  + D    +  +M   G+ P+ V + TL+ SF+++
Sbjct: 158 REMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKE 217

Query: 211 NETSKVIELLRSMDKRN 227
               KV  LL+ M+ R 
Sbjct: 218 GRKDKVAMLLKEMETRG 234


>gi|326505288|dbj|BAK03031.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326529675|dbj|BAK04784.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 597

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 6/233 (2%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + VT+NT+I G+CKEG + +A +L   M    I P+ VTY +L+ G+C A D  EA  L 
Sbjct: 248 DIVTWNTVIHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGYCRAGDVGEAMNLR 307

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
             M  RG+   V T+N I+ +LC++ KM E   LL  M +  V+ D       V    LI
Sbjct: 308 AVMEARGMLPGVATYNAIIRKLCEDGKMKEVNGLLSEMDERKVQADH------VTCNTLI 361

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           +   K G + +A ++   +  +GL  +  TY   IH     +Q+D+A +   +M   G +
Sbjct: 362 NSYSKKGDMPSACKVKTRMMESGLQLDQFTYKALIHGFSKAKQLDEAKEALFEMMGAGFS 421

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247
           PN  +F+ L+  F ++N    V+ +   + KR + P  S+   ++  L K  +
Sbjct: 422 PNYSVFSWLVDGFYKRNNADAVLLIPDELMKRGLPPDKSVYRSLIRRLCKKRL 474



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 41/251 (16%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+TVTY T++DG C+ G V +A  L   M+   + P V TYN++I   C      E   
Sbjct: 281 EPDTVTYTTLVDGYCRAGDVGEAMNLRAVMEARGMLPGVATYNAIIRKLCEDGKMKEVNG 340

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L  EM +R +Q+D VT N +++   K   M  A ++   M++ G++ D F       Y  
Sbjct: 341 LLSEMDERKVQADHVTCNTLINSYSKKGDMPSACKVKTRMMESGLQLDQF------TYKA 394

Query: 133 LIDGLCKIGKLKNARE-----------------------------------LSQSLTRAG 157
           LI G  K  +L  A+E                                   +   L + G
Sbjct: 395 LIHGFSKAKQLDEAKEALFEMMGAGFSPNYSVFSWLVDGFYKRNNADAVLLIPDELMKRG 454

Query: 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217
           L P+   Y   I  LC    +D A  +   M+ KG+  +C+++ +L  + +   + +   
Sbjct: 455 LPPDKSVYRSLIRRLCKKRLVDLAQKVLHQMQGKGLEADCLVYASLAYAQLTAGKLAAAS 514

Query: 218 ELLRSMDKRNV 228
           + L  M K+ +
Sbjct: 515 DTLNDMAKKQL 525



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 6/215 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+      ++  L +      A+ +F  M    +  N   YN+++H    A D   AE L
Sbjct: 142 PDAHACTALLTSLARARMTATARRVFDGMGRAGVAMNTHVYNAMLHVCLKAGDAARAEAL 201

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
              M   G+  D+ +FN  +    +     EA  + D M   GV      E +IV +  +
Sbjct: 202 MTRMDATGVPLDLFSFNTAIALYVRKGMQYEAMCVRDRMANDGV------EADIVTWNTV 255

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I G+CK G++K A +L + +  AG+ P+ VTY   +   C    + +A +L   ME +G+
Sbjct: 256 IHGMCKEGRMKEASQLHRDMVAAGIEPDTVTYTTLVDGYCRAGDVGEAMNLRAVMEARGM 315

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228
            P    +  ++       +  +V  LL  MD+R V
Sbjct: 316 LPGVATYNAIIRKLCEDGKMKEVNGLLSEMDERKV 350


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 10/240 (4%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           + ++Y T+I GL     +D+A ELF ++K    +PNVV Y ++I G   A    +    F
Sbjct: 107 DVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 166

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134
            EM          T+ V++D LCK + + +A ++ + M+Q G  PD       + Y  LI
Sbjct: 167 EEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDT------ITYTTLI 220

Query: 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194
           DG  K  K+  AR+L   +   G  P  VTY   +H  C  + +++A ++   M  +G  
Sbjct: 221 DGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCE 280

Query: 195 PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254
           P   IFT+L+  ++ K    +  ++L  M  R   P   + + ++DLL     S   +P+
Sbjct: 281 PGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLL----FSTGRVPE 336



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 6/234 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+T+TY T+IDG  K   +D+A++L   M  +   P  VTY S++HGFC  +  NEA+
Sbjct: 209 CVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAK 268

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +  +M +RG +  +  F  ++       + +EA ++L  M   G  PD      ++ Y 
Sbjct: 269 EVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPD------VILYT 322

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LID L   G++  AR +  S+   G  P+ +TY   I        ++ A ++   M   
Sbjct: 323 SLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKS 382

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           GV P+C  + +LM  +++     +   +   M    + P A   ++++  L K+
Sbjct: 383 GVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKD 436



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN V Y  +IDGL K G ++   + F +M   +  P   TY  +I G C A    +A 
Sbjct: 139 CSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDAC 198

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            +F +M+ +G   D +T+  ++D   K  KMDEA +LLD+M+  G  P A      V YG
Sbjct: 199 KVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTA------VTYG 252

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            ++ G CK+  +  A+E+   +   G  P +  +   +    +  + ++A+ +  +M  +
Sbjct: 253 SIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTAR 312

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239
           G AP+ +++T+L+          +   +  SM ++   P A     I+
Sbjct: 313 GCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTII 360



 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 117/264 (44%), Gaps = 37/264 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+P  V+YNT+I GL     +D+A + F  M D    P+V+ + +LIHGFC A       
Sbjct: 3   CEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGH 62

Query: 72  YLFIEMMDR-------------------------------GLQSDVVTFNVIMDELCKNR 100
            L  + + R                                   DV+++  ++  L  ++
Sbjct: 63  KLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSK 122

Query: 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160
           ++DEA  L + +   G  P      N+VAY  +IDGL K G++++  +  + ++ +  +P
Sbjct: 123 RIDEACELFEELKTAGCSP------NVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVP 176

Query: 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220
              TY + I  LC  + +  A  +F  M  KG  P+ + +TTL+  F + ++  +  +LL
Sbjct: 177 TRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLL 236

Query: 221 RSMDKRNVMPYASILSIIVDLLVK 244
             M  +   P A     IV    K
Sbjct: 237 DVMLTKGPEPTAVTYGSIVHGFCK 260



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 69/297 (23%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VTY +I+ G CK   +++AKE+  QM++    P +  + SL+  +       EA  
Sbjct: 245 EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQ 304

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV---- 128
           +  EM  RG   DV+ +  ++D L    ++ EA  + D MI+ G  PDA     I+    
Sbjct: 305 VLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFS 364

Query: 129 -------------------------AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                                    AY  L+DG  K+ ++  A  +   +  +G+ PN V
Sbjct: 365 KIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAV 424

Query: 164 TYNITIHALCNDEQMDKAHDLFLDM----EV----------------------------- 190
           T+N+ +H L  D + D+A  LF +M    EV                             
Sbjct: 425 TFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQE 484

Query: 191 ---KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILSIIVD 240
              +G+ P C  +T+L+ S  +     +  +L+  M K  V P    Y+++++ ++D
Sbjct: 485 MIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLID 541



 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C P+ +TY TII    K G V+ A E+   M    + P+   YNSL+ G+      ++A 
Sbjct: 349 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 408

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            ++  M+  G++ + VTFNV+M  L K+ K D A  L   M++    P       +V+Y 
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPP-----TLVSYT 463

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            LIDGL K G++  A    Q +   G++P   TY   I++L    ++ +A  L  DM   
Sbjct: 464 ILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKL 523

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
           GV P+   ++ L+   I  +      ++ + M KR   P
Sbjct: 524 GVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAP 562



 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 7/195 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+   YN+++DG  K   VD+A  ++ +M    I PN VT+N L+HG       + A  L
Sbjct: 386 PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSL 445

Query: 74  FIEMMDRG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           F EM+++  +   +V++ +++D L K  ++ EA      MI  G+ P+  C      Y  
Sbjct: 446 FKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPE--CH----TYTS 499

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LI  L K G++  A++L + + + G+ P+V  Y+  I  L +   +D A D+F +M  +G
Sbjct: 500 LIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 559

Query: 193 VAPNCVIFTTLMPSF 207
            APN V +  L   F
Sbjct: 560 CAPNEVTYKVLRRGF 574



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 101/210 (48%), Gaps = 10/210 (4%)

Query: 48  NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107
            P +V+YN++I G    +  +EA   F  M+D G + DV+ F  ++   CK  +     +
Sbjct: 4   EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHK 63

Query: 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167
           LL+  ++   RPD F       Y  +I G CK G L           +A L  +V++Y  
Sbjct: 64  LLNQALKR-FRPDVFL------YTSVIHGYCKAGDLDTGY-FRAVTPKASL--DVISYTT 113

Query: 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
            I  L + +++D+A +LF +++  G +PN V +T ++   ++       ++    M   +
Sbjct: 114 VIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSS 173

Query: 228 VMPYASILSIIVDLLVKNEISLNSIPQFNR 257
            +P  +  ++++D L K ++  ++   F +
Sbjct: 174 CVPTRTTYTVVIDGLCKAQMLPDACKVFEQ 203



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V+Y  +IDGL K G V +A   F +M D  I P   TY SLI+    A    EA+ L
Sbjct: 457 PTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKL 516

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             +M+  G+  DV  ++ ++  L  +  +D A  +   M++ G  P      N V Y  L
Sbjct: 517 VEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAP------NEVTYKVL 570

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLM 159
             G    G+  +   + Q  ++   M
Sbjct: 571 RRGFRAAGRALDLEAVKQHFSQGVAM 596



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G  P +V+YN  I  L + ++MD+A+  F  M   G  P+ + FTTL+  F +  +    
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 217 IELLRSMDKR---NVMPYASIL 235
            +LL    KR   +V  Y S++
Sbjct: 62  HKLLNQALKRFRPDVFLYTSVI 83


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 5   NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA 64
           N   G   KP  + YN +I GLC+EG + +A ++  +M +   + ++ TYN +I+G C  
Sbjct: 380 NAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKM 439

Query: 65  NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124
              ++A  L  + + +G   DV TFN ++D  CK  KM+   ++L+ M   GV PD    
Sbjct: 440 GCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPD---- 495

Query: 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDL 184
             ++ Y  +++GL K  K ++  E  +++   G +PN +TYNI   +LC   ++++A DL
Sbjct: 496 --VITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDL 553

Query: 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226
             ++  KG+ P+ V F T++  F    +     +L R M ++
Sbjct: 554 VDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQ 595



 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 127/268 (47%), Gaps = 41/268 (15%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N V Y T++ G  +E +  +A ELF  M    I P+V T+N L+H  C   +  E+E
Sbjct: 177 CQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESE 236

Query: 72  YL------------------FIE-------------MMD----RGLQSDVVTFNVIMDEL 96
            L                  FI+             M+D     GL  DVVT+N ++  L
Sbjct: 237 RLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGL 296

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CKN  + EA + L  ++ GG+ PD F       Y  LIDG CK+G L+NA ++ Q     
Sbjct: 297 CKNSNVVEAEKYLHKLVNGGLEPDGF------TYNTLIDGYCKMGMLQNAEKILQGAICK 350

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           G +P+  TY   I+ LC ++++D+A  LF     KG+ P  +++  L+    ++    + 
Sbjct: 351 GFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQA 410

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVK 244
           ++++  M +          +++++ L K
Sbjct: 411 LQMMNEMSENGCSSDIWTYNLVINGLCK 438



 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 13/235 (5%)

Query: 9   GVVCK---PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           G +CK   P+  TY ++I+GLC+   +D+A  LF     + + P V+ YN LI G C   
Sbjct: 346 GAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEG 405

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
              +A  +  EM + G  SD+ T+N++++ LCK   + +A  L++  I  G  PD F   
Sbjct: 406 LILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVF--- 462

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
               +  LIDG CK  K++   ++   +   G+ P+V+TYN  ++ L    + +   + F
Sbjct: 463 ---TFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETF 519

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP----YASILS 236
             M  KG  PN + +  L  S  +  + ++ ++L+  +  + + P    +A+I+S
Sbjct: 520 ETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIIS 574



 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 34/265 (12%)

Query: 15  NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLF 74
           N  T+N  I GLC++G +  A  +   +  E + P+VVTYN+LI G C  ++  EAE   
Sbjct: 250 NLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYL 309

Query: 75  IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF--CEI------- 125
            ++++ GL+ D  T+N ++D  CK   +  A ++L   I  G  PD F  C +       
Sbjct: 310 HKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQN 369

Query: 126 --------------------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165
                                ++ Y  LI GLC+ G +  A ++   ++  G   ++ TY
Sbjct: 370 DEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTY 429

Query: 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225
           N+ I+ LC    +  A++L  D   KG  P+   F TL+  + ++ +    I++L  M  
Sbjct: 430 NLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWS 489

Query: 226 RNVMP----YASILSIIVDLLVKNE 246
             V P    Y S+L+ +    VKNE
Sbjct: 490 HGVTPDVITYNSVLNGLSK-AVKNE 513



 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 115/230 (50%), Gaps = 7/230 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+  T+NT+IDG CK+  ++   ++  +M    + P+V+TYNS+++G   A    +    
Sbjct: 459 PDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMET 518

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
           F  M+++G   + +T+N++ + LCK  K++EA  L+D ++  G+ PD       V++  +
Sbjct: 519 FETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDT------VSFATI 572

Query: 134 IDGLCKIGKLKNARELSQSL-TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           I G    G LK A +L + +  +  +     TYNI I+A      +     LFL+M   G
Sbjct: 573 ISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGG 632

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242
            AP+   +  ++  F     T    + L  M ++  +P  +    +++ L
Sbjct: 633 CAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCL 682



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+  TYNT+IDG CK G +  A+++      +   P+  TY SLI+G C  ++ + A  
Sbjct: 318 EPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALA 377

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF   + +GL+  V+ +N+++  LC+   + +A ++++ M + G      C  +I  Y  
Sbjct: 378 LFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENG------CSSDIWTYNL 431

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +I+GLCK+G + +A  L       G +P+V T+N  I   C   +M+    +   M   G
Sbjct: 432 VINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHG 491

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
           V P+ + + +++    +  +   ++E   +M ++  +P     +I+ + L K
Sbjct: 492 VTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCK 543



 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 129/280 (46%), Gaps = 41/280 (14%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP---------------------- 49
           C+P+ ++YN I++ L + G+  +A ++FL+MK+  I P                      
Sbjct: 107 CEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSAL 166

Query: 50  -------------NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96
                        N V Y +++ GF   N   EA  LF +M+  G+  DV TFN ++  L
Sbjct: 167 RLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTL 226

Query: 97  CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156
           CK  ++ E+ RLL+ +++ G+     C  N+  +   I GLC+ G L  A  +  S+ R 
Sbjct: 227 CKKGEVQESERLLNKVLKKGM-----CS-NLFTFNIFIQGLCRKGMLSGAMSMLDSVIRE 280

Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
           GL P+VVTYN  I  LC +  + +A      +   G+ P+   + TL+  + +       
Sbjct: 281 GLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNA 340

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
            ++L+    +  +P       +++ L +N+    ++  FN
Sbjct: 341 EKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFN 380



 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 6/219 (2%)

Query: 28  KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87
           ++G V +A ++F +M   N  P+V++YN++++    +    +A  +F+ M + G+  DV 
Sbjct: 88  RKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVY 147

Query: 88  TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147
           TF + +   C+ ++   A RLL+ M+  G      C++N VAY  ++ G  +      A 
Sbjct: 148 TFTIRIKSFCRTKRPHSALRLLNNMVSQG------CQLNAVAYCTVVAGFYEENYRVEAY 201

Query: 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207
           EL   + R G+ P+V T+N  +H LC   ++ ++  L   +  KG+  N   F   +   
Sbjct: 202 ELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGL 261

Query: 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
            RK   S  + +L S+ +  + P     + ++  L KN 
Sbjct: 262 CRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNS 300



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 7/188 (3%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C PN +TYN + + LCK G V++A +L  ++ ++ I P+ V++ ++I GF    D   A 
Sbjct: 527 CVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAY 586

Query: 72  YLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
            LF  M ++  +     T+N++++   +   +    +L   M  GG  PD +       Y
Sbjct: 587 QLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTY------TY 640

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +IDG C  G   +  +    +   G +P++ T+   I+ LC   ++ +A D+   M  
Sbjct: 641 RVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVH 700

Query: 191 KGVAPNCV 198
            G+ P  V
Sbjct: 701 NGIVPEVV 708



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 98/216 (45%), Gaps = 14/216 (6%)

Query: 34  KAKELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEAEYLFIEM---MDRGLQSDVVTF 89
           KA E+F ++K E+    +++TY  +I    +  +    E +  E    +D  L   V  +
Sbjct: 22  KALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDIDNSLLEGV--Y 79

Query: 90  NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGKLKNARE 148
              M    +  K+ EA  + +       R D + CE ++++Y  +++ L + G  K A +
Sbjct: 80  IGAMKSYGRKGKVQEAVDVFE-------RMDFYNCEPSVLSYNAIMNILVESGYFKQAHK 132

Query: 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208
           +   +   G++P+V T+ I I + C  ++   A  L  +M  +G   N V + T++  F 
Sbjct: 133 VFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFY 192

Query: 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244
            +N   +  EL   M +  + P  S  + ++  L K
Sbjct: 193 EENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCK 228


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 125/236 (52%), Gaps = 7/236 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEA 70
           C P+ ++Y T++  LCKE  + + + L  +M KD N+ P+ VTYN+ +H       G+EA
Sbjct: 333 CSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEA 392

Query: 71  EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130
                E  +R  + D V ++ I+   C+  +MD+A  +++ M   G  PD      +V Y
Sbjct: 393 LEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPD------VVTY 446

Query: 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190
             +I+GLC+  K+  A+++ + + + G  PN V+Y   ++ LC +    +A ++    E 
Sbjct: 447 TSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEE 506

Query: 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246
               PN + ++ LM  F R+ ++S+  +L+R M K+   P    +++++  L + E
Sbjct: 507 DWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEE 562



 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 124/266 (46%), Gaps = 41/266 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P+ VTYNT +  L K G  D+A E   + ++     + V Y++++H FC     ++A+ +
Sbjct: 371 PDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEI 430

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM  +G   DVVT+  +++ LC+ RK+D+A ++L  M + G +P      N V+Y  L
Sbjct: 431 VNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKP------NTVSYTAL 484

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH----------------------- 170
           ++GLCK G    ARE+         +PN +TY++ +H                       
Sbjct: 485 LNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGF 544

Query: 171 ------------ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIE 218
                       +LC +E++D+A          G A N V FTT++  F +K++    + 
Sbjct: 545 FPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALS 604

Query: 219 LLRSMDKRNVMPYASILSIIVDLLVK 244
           LL  M   N  P     + I+D L K
Sbjct: 605 LLDDMYLSNKHPDVVTYTTIIDALGK 630



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 6/216 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           CKPNTV+Y  +++GLCK G   +A+E+    +++   PN +TY+ L+HGF      +EA 
Sbjct: 474 CKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEAC 533

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            L  EM+ +G     V  N+++  LC+  K+DEA R ++  +  G      C +N+V + 
Sbjct: 534 DLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNG------CAVNVVNFT 587

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +I G C+   L+ A  L   +  +   P+VVTY   I AL    ++++A  L + M   
Sbjct: 588 TVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRV 647

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227
           G+ P  V + T++  + R      +++LL  M  R 
Sbjct: 648 GLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQ 683



 Score = 99.8 bits (247), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 30/257 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+    NT I  L     +DKA     +M+   I PNV+TYN LI G+C  +   +A  
Sbjct: 264 EPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAME 323

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ-GGVRPDAFC-------- 123
           L  EM  +G   D +++  +M  LCK +++ E   L++ M++   + PD           
Sbjct: 324 LIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHML 383

Query: 124 ---------------------EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162
                                 ++ V Y  ++   C+ G++  A+E+   +   G +P+V
Sbjct: 384 SKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDV 443

Query: 163 VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222
           VTY   I+ LC + ++D+A  +   M   G  PN V +T L+    +   + +  E++  
Sbjct: 444 VTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNM 503

Query: 223 MDKRNVMPYASILSIIV 239
            ++   +P A   S+++
Sbjct: 504 SEEDWWIPNAITYSVLM 520



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 118/280 (42%), Gaps = 44/280 (15%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P    Y  ++    + G +  A  +   M+   I P++   N+ IH     N  ++A  
Sbjct: 231 RPEAFGY--VMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVR 288

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
               M    ++ +V+T+N ++   C   ++++A  L+  M   G  PD       ++Y  
Sbjct: 289 FLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDK------ISYYT 342

Query: 133 LIDGLCKIGKLKNARELSQSLTR-AGLMPNVVTYNI------------------------ 167
           ++  LCK  ++K  R L + + + + L+P+ VTYN                         
Sbjct: 343 VMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEER 402

Query: 168 -----------TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216
                       +H+ C + +MDKA ++  +M  KG  P+ V +T+++    ++ +  + 
Sbjct: 403 RFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQA 462

Query: 217 IELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256
            ++LR M K    P     + +++ L KN  SL +    N
Sbjct: 463 KKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMN 502



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 27/171 (15%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           P  V  N +I  LC+E  VD+AK    Q  +     NVV + ++IHGFC  +D   A  L
Sbjct: 546 PTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSL 605

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP---------DAFCE 124
             +M       DVVT+  I+D L K  +++EAT+L   M++ G+ P           +C 
Sbjct: 606 LDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCR 665

Query: 125 INIV------------------AYGCLIDGLCKIGKLKNARELSQSLTRAG 157
           +  V                  AY  +I+ LC  G L+ A +L   + R  
Sbjct: 666 MGRVEDLLKLLEKMLSRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTA 716


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 8/245 (3%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA-NDGNEAEY 72
           P+TVTYN +I G CK G + KA E F  M+ +N+ P+ +TY +LI   CY+  D +    
Sbjct: 251 PDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQA-CYSERDFDTCLS 309

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           L++EM +RGL+    ++++++  LCK RK  EA  + + M Q G      C  N+  Y  
Sbjct: 310 LYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKG------CRANVAIYTA 363

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LID   K G ++ A  L + +   G  P+ VTY++ ++ LC   ++D   +LF     KG
Sbjct: 364 LIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKG 423

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252
           VA N + + +L+    +         L   M ++     +   + I+D L K+     ++
Sbjct: 424 VAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQAL 483

Query: 253 PQFNR 257
             F R
Sbjct: 484 ALFGR 488



 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 116/259 (44%), Gaps = 30/259 (11%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ +TY T+I     E   D    L+L+M++  +     +Y+ +I G C      EA  
Sbjct: 285 KPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYA 344

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA----------- 121
           +F  M  +G +++V  +  ++D   KN  M+EA RL + M   G  PDA           
Sbjct: 345 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLC 404

Query: 122 -------------FCE-----INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163
                        FC      IN + Y  LIDGL K G++++A  L + ++  G   +  
Sbjct: 405 KSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSY 464

Query: 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223
            YN  I AL    ++D+A  LF  ME +G       FT L+    ++++  + I+    M
Sbjct: 465 CYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKM 524

Query: 224 DKRNVMP-YASILSIIVDL 241
             + + P  AS  ++ + L
Sbjct: 525 IDKGITPTVASFRALAIGL 543



 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 6/183 (3%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P+ VTY+ +++GLCK G +D   ELF   +++ +  N + Y SLI G   A    +AE 
Sbjct: 390 EPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAEN 449

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           LF EM ++G   D   +N I+D L K+ K+D+A  L   M + G      C+  +  +  
Sbjct: 450 LFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG------CDQTVYTFTI 503

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           LIDGL K  K + A +    +   G+ P V ++      LC   ++ +A  +  D+   G
Sbjct: 504 LIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMG 563

Query: 193 VAP 195
           + P
Sbjct: 564 IIP 566



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 12  CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71
           C+ N   Y  +ID   K G +++A  LF +MK+E   P+ VTY+ L++G C +   ++  
Sbjct: 354 CRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGM 413

Query: 72  YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131
            LF    ++G+  + + +  ++D L K  ++++A  L + M + G   D++C      Y 
Sbjct: 414 ELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYC------YN 467

Query: 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191
            +ID L K GK+  A  L   +   G    V T+ I I  L  + + ++A   +  M  K
Sbjct: 468 AIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDK 527

Query: 192 GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238
           G+ P    F  L        + ++  ++L  +    ++P  +   +I
Sbjct: 528 GITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPETAFEDMI 574



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 110/250 (44%), Gaps = 7/250 (2%)

Query: 6   REFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65
           R+F V   PN VT+  +     +E      +  F   K +     +  + SLI    ++ 
Sbjct: 104 RKFFVKLSPNFVTF-VLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSA 162

Query: 66  DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125
           D  +   +F E+ DRGL       N ++        ++E   +   M + G+ P      
Sbjct: 163 DLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDP------ 216

Query: 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185
           ++  Y  L++GL     +++A ++ + +    ++P+ VTYNI I   C   ++ KA + F
Sbjct: 217 SLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKF 276

Query: 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
            DME+K V P+ + + TL+ +   + +    + L   M++R +       S+++  L K 
Sbjct: 277 RDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQ 336

Query: 246 EISLNSIPQF 255
              + +   F
Sbjct: 337 RKCMEAYAVF 346


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 9/201 (4%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           KP+ VTY T+IDG CKEG +D A E+  +M DE +  + VTY +LI G   A    +AE 
Sbjct: 414 KPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAER 473

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +  EMM+ GLQ D  T+ +++D  CKN  +    + L  M   G  P       IV Y  
Sbjct: 474 ILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNP------GIVTYNV 527

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           +++G C +G++KNA  L  ++   G+ PN +TYNI +   C   ++    +L      KG
Sbjct: 528 VMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL---KSAKG 584

Query: 193 VAPNCVIFTTLMPSFIRKNET 213
           +  +  ++T+L+  F++K   
Sbjct: 585 MVSDFGVYTSLINEFVKKKSA 605



 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 13  KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEY 72
           +P  VT+NT++ G+CK   ++ A  L   M    I P+V TY + I G C      +A  
Sbjct: 274 QPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAME 333

Query: 73  LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132
           +F EM +RGL  + V    ++D  CK   +     L   M   GV+ D      +VAY  
Sbjct: 334 MFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKAD------LVAYNA 387

Query: 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192
           L++G C++  +K A ++ + + + GL P+ VTY   I   C + ++D A ++  +M  +G
Sbjct: 388 LVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEG 447

Query: 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245
           VA + V +T L+    +   +     +L  M +  + P  +  ++++D   KN
Sbjct: 448 VALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKN 500



 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 10/232 (4%)

Query: 3   NGNREFGVVCK----PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI 58
           N N   G++ K    P+  TY   I GLCK G +  A E+F +M +  +NPN V   +LI
Sbjct: 295 NANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLI 354

Query: 59  HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR 118
              C   D      L  EM  RG+++D+V +N +++  C+ R M  A  +++ M + G++
Sbjct: 355 DAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLK 414

Query: 119 PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178
           PD       V Y  LIDG CK G+L  A E+ Q ++  G+  + VTY   I  L    + 
Sbjct: 415 PDK------VTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRS 468

Query: 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230
             A  +  +M   G+ P+   +T ++ +F +  +     + L+ M  +   P
Sbjct: 469 VDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNP 520



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 14  PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYL 73
           PNTV   T+ID  CKEG V    EL  +M    +  ++V YN+L++GFC   D   A  +
Sbjct: 345 PNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDI 404

Query: 74  FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133
             EM   GL+ D VT+  ++D  CK  ++D A  +   M   GV       ++ V Y  L
Sbjct: 405 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGV------ALDDVTYTAL 458

Query: 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV 193
           I GL K G+  +A  +   +  AGL P+  TY + I A C +  +        +M+ KG 
Sbjct: 459 ISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGK 518

Query: 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240
            P  V +  +M  F    +      LL +M    V P     +I++D
Sbjct: 519 NPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLD 565



 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 6/209 (2%)

Query: 32  VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91
           V +A   +L + D  + P    +N L+     +     A  +F EM+ RG+Q  VVTFN 
Sbjct: 223 VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 282

Query: 92  IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151
           +M  +CK   ++ A  L  LM + G+ PD +       YG  I GLCK G++++A E+ +
Sbjct: 283 LMSGMCKASDLNNANALRGLMAKAGIAPDVY------TYGAFIQGLCKTGRIQDAMEMFE 336

Query: 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211
            +   GL PN V     I A C +  +    +L  +M  +GV  + V +  L+  F R  
Sbjct: 337 EMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVR 396

Query: 212 ETSKVIELLRSMDKRNVMPYASILSIIVD 240
           +     +++  M K  + P     + ++D
Sbjct: 397 DMKAANDIVEEMRKDGLKPDKVTYTTLID 425


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.138    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,763,788,799
Number of Sequences: 23463169
Number of extensions: 145083868
Number of successful extensions: 486240
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7103
Number of HSP's successfully gapped in prelim test: 4692
Number of HSP's that attempted gapping in prelim test: 331234
Number of HSP's gapped (non-prelim): 70683
length of query: 259
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 120
effective length of database: 9,097,814,876
effective search space: 1091737785120
effective search space used: 1091737785120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)