BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036731
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 124 EINIVAYGCLIDGLCK--IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
++ ++ YGCL G C I ++N+ + Q + GL + + T+H D+ +
Sbjct: 858 DLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHTLHQWLKDKNKGEI 917
Query: 182 HDLFLDMEVKGVAPNCV 198
+D +D+ + A CV
Sbjct: 918 YDAAIDLFTRSCAGYCV 934
>pdb|3ZIM|A Chain A, Discovery Of A Potent And Isoform-selective Targeted
Covalent Inhibitor Of The Lipid Kinase Pi3kalpha
Length = 940
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 124 EINIVAYGCLIDGLCK--IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
++ ++ YGCL G C I ++N+ + Q + GL + + T+H D+ +
Sbjct: 724 DLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHTLHQWLKDKNKGEI 783
Query: 182 HDLFLDMEVKGVAPNCV 198
+D +D+ + A CV
Sbjct: 784 YDAAIDLFTRSCAGYCV 800
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 124 EINIVAYGCLIDGLCK--IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
++ ++ YGCL G C I ++N+ + Q + GL + + T+H D+ +
Sbjct: 858 DLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHTLHQWLKDKNKGEI 917
Query: 182 HDLFLDMEVKGVAPNCV 198
+D +D+ + A CV
Sbjct: 918 YDAAIDLFTRSCAGYCV 934
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 1096
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 124 EINIVAYGCLIDGLCK--IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
++ ++ YGCL G C I ++N+ + Q + GL + + T+H D+ +
Sbjct: 858 DLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHTLHQWLKDKNKGEI 917
Query: 182 HDLFLDMEVKGVAPNCV 198
+D +D+ + A CV
Sbjct: 918 YDAAIDLFTRSCAGYCV 934
>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
Length = 1091
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 124 EINIVAYGCLIDGLCK--IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181
++ ++ YGCL G C I ++N+ + Q + GL + + T+H D+ +
Sbjct: 853 DLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHTLHQWLKDKNKGEI 912
Query: 182 HDLFLDMEVKGVAPNCV 198
+D +D+ + A CV
Sbjct: 913 YDAAIDLFTRSCAGYCV 929
>pdb|4B3K|A Chain A, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|B Chain B, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|C Chain C, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|D Chain D, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|E Chain E, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|F Chain F, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|A Chain A, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|B Chain B, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|C Chain C, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|D Chain D, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|E Chain E, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|F Chain F, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
Length = 479
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 15/136 (11%)
Query: 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA--- 156
R + TRL+D Q + PD N V CL +G+ + L + +L +L +A
Sbjct: 73 RTSIQWTRLIDDFEQATINPDGLAYYNRVIDACLANGIRPVINLHHF-DLPIALYQAYGG 131
Query: 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE---- 212
+VV + +C ++ D+ D F+ E V + P+ + +
Sbjct: 132 WESKHVVDLFVAFSKVCFEQFGDRVKDWFVHNEPMVVVEGSYLMQFHYPAIVDGKKAVQV 191
Query: 213 -------TSKVIELLR 221
T+KVI+ R
Sbjct: 192 AYNLALATAKVIQAYR 207
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEA 70
PN T+ + + A ++ QMK I P + +Y + GFC D ++A
Sbjct: 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
>pdb|2BF6|A Chain A, Atomic Resolution Structure Of The Bacterial Sialidase
Nani From Clostridium Perfringens In Complex With
Alpha-Sialic Acid (Neu5ac)
Length = 449
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 120 DAFCEINIVAYGCLIDGL-CKIGKLKNARELSQSLTRAGLMPNVVTY 165
+ +C+++++ Y +DG I NAR S R GL+ V TY
Sbjct: 343 EPYCQLSVINYSQKVDGKDAVIFSNPNARSRSNGTVRIGLINQVGTY 389
>pdb|2VK5|A Chain A, The Structure Of Clostridium Perfringens Nani Sialidase
And Its Catalytic Intermediates
pdb|2VK6|A Chain A, The Structure Of Clostridium Perfringens Nani Sialidase
And Its Catalytic Intermediates
pdb|2VK7|A Chain A, The Structure Of Clostridium Perfringens Nani Sialidase
And Its Catalytic Intermediates
pdb|2VK7|B Chain B, The Structure Of Clostridium Perfringens Nani Sialidase
And Its Catalytic Intermediates
Length = 452
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 120 DAFCEINIVAYGCLIDGL-CKIGKLKNARELSQSLTRAGLMPNVVTY 165
+ +C+++++ Y +DG I NAR S R GL+ V TY
Sbjct: 343 EPYCQLSVINYSQKVDGKDAVIFSNPNARSRSNGTVRIGLINQVGTY 389
>pdb|2HNL|A Chain A, Structure Of The Prostaglandin D Synthase From The
Parasitic Nematode Onchocerca Volvulus
pdb|2HNL|B Chain B, Structure Of The Prostaglandin D Synthase From The
Parasitic Nematode Onchocerca Volvulus
Length = 225
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 199 IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231
+F L+P KN T K EL R++ + +VMP+
Sbjct: 122 LFQKLIPWTHEKNTTKKA-ELFRNLSESDVMPF 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,197,712
Number of Sequences: 62578
Number of extensions: 277482
Number of successful extensions: 716
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 16
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)