Query 036731
Match_columns 259
No_of_seqs 481 out of 1158
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 04:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.8E-47 6.1E-52 321.6 28.4 240 13-258 504-745 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.7E-47 8.1E-52 320.8 28.0 244 9-258 465-710 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.5E-44 5.4E-49 299.8 22.1 249 2-258 175-488 (697)
4 PLN03081 pentatricopeptide (PP 100.0 5.2E-44 1.1E-48 297.9 22.1 243 2-257 276-519 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.6E-42 5.7E-47 293.7 20.7 247 2-258 340-651 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 3E-42 6.6E-47 293.3 20.4 243 2-258 239-481 (857)
7 PRK11788 tetratricopeptide rep 99.9 2.2E-20 4.8E-25 147.0 23.7 237 15-257 68-307 (389)
8 PRK11788 tetratricopeptide rep 99.9 1.3E-19 2.7E-24 142.8 25.7 230 17-258 108-344 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 2E-17 4.4E-22 143.1 27.5 229 16-258 669-897 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 3.9E-17 8.6E-22 141.3 27.4 225 19-256 570-794 (899)
11 PF13429 TPR_15: Tetratricopep 99.8 2.2E-17 4.8E-22 124.0 12.7 244 2-257 25-273 (280)
12 PRK15174 Vi polysaccharide exp 99.7 9.6E-15 2.1E-19 121.3 27.6 229 16-257 144-377 (656)
13 TIGR00990 3a0801s09 mitochondr 99.7 1E-14 2.2E-19 121.2 27.6 232 15-257 330-567 (615)
14 PRK15174 Vi polysaccharide exp 99.7 1.6E-14 3.5E-19 120.0 27.5 231 15-257 109-343 (656)
15 KOG4422 Uncharacterized conser 99.7 1.4E-14 3.1E-19 108.7 20.2 236 12-257 203-458 (625)
16 TIGR00990 3a0801s09 mitochondr 99.7 1.9E-13 4E-18 113.7 28.0 160 88-257 333-492 (615)
17 TIGR02521 type_IV_pilW type IV 99.7 4.7E-13 1E-17 97.8 25.8 200 16-224 31-230 (234)
18 PRK10747 putative protoheme IX 99.7 1.1E-13 2.4E-18 108.7 23.4 225 23-257 125-386 (398)
19 PRK09782 bacteriophage N4 rece 99.7 3.9E-13 8.5E-18 115.0 27.5 227 15-257 476-702 (987)
20 PF13429 TPR_15: Tetratricopep 99.6 9.6E-16 2.1E-20 115.2 8.3 224 21-257 13-239 (280)
21 TIGR00540 hemY_coli hemY prote 99.6 1.4E-12 3E-17 103.1 25.6 232 19-257 121-395 (409)
22 PF13041 PPR_2: PPR repeat fam 99.6 1.7E-15 3.6E-20 82.1 6.3 50 14-63 1-50 (50)
23 COG2956 Predicted N-acetylgluc 99.6 7.3E-13 1.6E-17 96.1 20.4 220 29-257 48-274 (389)
24 TIGR02521 type_IV_pilW type IV 99.6 2.2E-12 4.7E-17 94.2 23.1 199 49-257 29-228 (234)
25 KOG4626 O-linked N-acetylgluco 99.6 4.7E-13 1E-17 105.1 18.4 225 17-257 253-481 (966)
26 PRK09782 bacteriophage N4 rece 99.6 6.1E-12 1.3E-16 107.9 26.7 229 14-256 507-735 (987)
27 PRK11447 cellulose synthase su 99.6 3.1E-12 6.7E-17 113.2 25.3 230 19-257 464-736 (1157)
28 PRK11447 cellulose synthase su 99.6 6.9E-12 1.5E-16 111.1 26.9 233 15-258 384-697 (1157)
29 COG2956 Predicted N-acetylgluc 99.6 2.3E-12 5E-17 93.6 19.2 220 2-225 52-277 (389)
30 KOG4422 Uncharacterized conser 99.6 6.3E-12 1.4E-16 94.8 21.7 229 12-246 238-482 (625)
31 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.4E-17 103.4 18.0 228 17-256 354-615 (638)
32 KOG1155 Anaphase-promoting com 99.5 5E-12 1.1E-16 96.0 20.3 222 26-257 237-491 (559)
33 PRK12370 invasion protein regu 99.5 2.9E-11 6.2E-16 99.2 26.0 228 14-256 254-497 (553)
34 PF13041 PPR_2: PPR repeat fam 99.5 2.9E-14 6.4E-19 77.2 5.9 50 49-98 1-50 (50)
35 KOG4318 Bicoid mRNA stability 99.5 4.2E-13 9.1E-18 108.9 14.8 225 9-249 18-288 (1088)
36 KOG4626 O-linked N-acetylgluco 99.5 1.1E-12 2.3E-17 103.2 16.1 226 17-257 219-447 (966)
37 KOG1129 TPR repeat-containing 99.5 2.1E-12 4.5E-17 94.1 16.2 226 20-257 227-454 (478)
38 COG3071 HemY Uncharacterized e 99.5 1.6E-10 3.5E-15 86.3 24.8 233 17-257 119-386 (400)
39 KOG1155 Anaphase-promoting com 99.5 5.3E-11 1.1E-15 90.6 22.2 234 11-254 257-529 (559)
40 PRK10049 pgaA outer membrane p 99.5 1.7E-10 3.8E-15 98.1 27.3 234 14-258 47-336 (765)
41 KOG1840 Kinesin light chain [C 99.5 4.9E-11 1.1E-15 94.4 21.5 240 17-256 200-474 (508)
42 PRK10049 pgaA outer membrane p 99.5 1.7E-10 3.6E-15 98.2 25.6 249 4-258 68-385 (765)
43 PRK12370 invasion protein regu 99.5 1.3E-10 2.9E-15 95.3 24.0 209 4-225 280-501 (553)
44 PRK14574 hmsH outer membrane p 99.4 8.6E-11 1.9E-15 99.1 22.9 251 3-258 86-442 (822)
45 COG3063 PilF Tfp pilus assembl 99.4 1.3E-09 2.7E-14 76.0 24.4 208 18-236 37-244 (250)
46 KOG1129 TPR repeat-containing 99.4 6.4E-12 1.4E-16 91.6 13.5 214 3-226 241-458 (478)
47 KOG1126 DNA-binding cell divis 99.4 3.3E-11 7.2E-16 95.3 18.0 205 13-232 418-626 (638)
48 TIGR00540 hemY_coli hemY prote 99.4 6.5E-10 1.4E-14 88.0 24.4 226 19-256 85-359 (409)
49 PRK10747 putative protoheme IX 99.4 6.8E-10 1.5E-14 87.5 23.2 189 23-225 160-389 (398)
50 PRK11189 lipoprotein NlpI; Pro 99.4 4.5E-09 9.8E-14 79.5 25.8 214 16-244 64-283 (296)
51 PRK14574 hmsH outer membrane p 99.4 6.6E-10 1.4E-14 93.8 22.7 126 21-156 73-198 (822)
52 PRK11189 lipoprotein NlpI; Pro 99.4 1.1E-09 2.5E-14 82.8 22.0 213 30-257 40-261 (296)
53 KOG2003 TPR repeat-containing 99.4 4.9E-10 1.1E-14 85.6 19.3 207 28-247 502-709 (840)
54 COG3063 PilF Tfp pilus assembl 99.3 4.4E-09 9.6E-14 73.3 20.4 192 52-253 36-228 (250)
55 PF12569 NARP1: NMDA receptor- 99.3 7.7E-09 1.7E-13 83.0 24.4 125 129-256 196-329 (517)
56 KOG0547 Translocase of outer m 99.3 2.1E-09 4.6E-14 82.6 20.0 228 18-257 328-562 (606)
57 KOG2076 RNA polymerase III tra 99.3 8.2E-09 1.8E-13 84.7 23.2 93 164-257 416-508 (895)
58 COG3071 HemY Uncharacterized e 99.3 1.9E-08 4E-13 75.6 22.8 226 22-256 88-352 (400)
59 KOG2003 TPR repeat-containing 99.2 4.4E-09 9.6E-14 80.5 18.7 183 64-258 503-686 (840)
60 PF04733 Coatomer_E: Coatomer 99.2 1.5E-09 3.2E-14 81.3 14.2 222 16-258 35-262 (290)
61 KOG1840 Kinesin light chain [C 99.2 2.4E-08 5.1E-13 79.5 21.4 210 46-257 194-434 (508)
62 PF12854 PPR_1: PPR repeat 99.2 6.2E-11 1.3E-15 57.9 4.0 34 10-43 1-34 (34)
63 KOG2002 TPR-containing nuclear 99.1 5E-08 1.1E-12 81.0 22.0 233 14-257 268-521 (1018)
64 KOG0547 Translocase of outer m 99.1 5.6E-08 1.2E-12 75.1 20.5 127 128-257 361-487 (606)
65 PF04733 Coatomer_E: Coatomer 99.1 1.4E-08 3E-13 76.1 15.8 198 12-226 62-265 (290)
66 KOG1173 Anaphase-promoting com 99.1 1.5E-07 3.2E-12 74.0 21.4 59 165-224 458-516 (611)
67 KOG4318 Bicoid mRNA stability 99.1 1.9E-09 4.1E-14 88.4 11.1 183 37-240 11-247 (1088)
68 KOG1173 Anaphase-promoting com 99.0 2.8E-07 6E-12 72.5 21.3 231 15-256 243-479 (611)
69 TIGR03302 OM_YfiO outer membra 99.0 2.6E-07 5.7E-12 67.8 20.6 187 14-226 31-232 (235)
70 KOG0495 HAT repeat protein [RN 99.0 6E-07 1.3E-11 72.1 23.3 225 17-254 517-775 (913)
71 PLN02789 farnesyltranstransfer 99.0 1.1E-06 2.4E-11 66.9 23.7 217 17-245 38-268 (320)
72 TIGR03302 OM_YfiO outer membra 99.0 4.3E-07 9.3E-12 66.6 21.0 186 49-258 31-229 (235)
73 PF12854 PPR_1: PPR repeat 99.0 5E-10 1.1E-14 54.7 3.7 32 46-77 2-33 (34)
74 KOG1070 rRNA processing protei 99.0 7.1E-07 1.5E-11 77.1 24.0 226 15-250 1457-1689(1710)
75 KOG2002 TPR-containing nuclear 99.0 1.4E-07 3E-12 78.5 19.3 202 29-239 543-758 (1018)
76 KOG0495 HAT repeat protein [RN 99.0 1.4E-06 3.1E-11 70.0 23.3 229 15-256 583-811 (913)
77 KOG2076 RNA polymerase III tra 99.0 2.8E-07 6.1E-12 76.1 20.0 223 23-251 287-545 (895)
78 KOG1128 Uncharacterized conser 99.0 4.3E-08 9.2E-13 79.1 15.0 203 22-244 404-635 (777)
79 cd05804 StaR_like StaR_like; a 99.0 8.6E-07 1.9E-11 69.3 21.8 158 23-191 50-215 (355)
80 KOG1125 TPR repeat-containing 99.0 6E-07 1.3E-11 70.8 20.3 224 26-254 295-564 (579)
81 PRK10370 formate-dependent nit 98.9 1.1E-06 2.4E-11 62.3 19.9 119 64-191 52-173 (198)
82 cd05804 StaR_like StaR_like; a 98.9 7E-06 1.5E-10 64.2 25.7 201 16-226 6-215 (355)
83 KOG1070 rRNA processing protei 98.9 6.2E-07 1.3E-11 77.5 19.8 209 34-257 1443-1659(1710)
84 PRK10370 formate-dependent nit 98.9 2.4E-06 5.1E-11 60.7 19.8 163 58-243 23-188 (198)
85 PRK15179 Vi polysaccharide bio 98.9 6.7E-06 1.5E-10 68.9 25.4 132 50-191 85-217 (694)
86 KOG1915 Cell cycle control pro 98.9 1.7E-06 3.6E-11 67.1 19.9 153 2-156 158-351 (677)
87 PRK15359 type III secretion sy 98.9 1.9E-07 4.1E-12 62.8 12.9 108 7-116 15-122 (144)
88 KOG1174 Anaphase-promoting com 98.9 2.7E-06 5.8E-11 64.9 19.9 229 13-256 229-495 (564)
89 KOG3081 Vesicle coat complex C 98.9 2.2E-06 4.7E-11 61.5 18.3 147 87-250 109-259 (299)
90 COG5010 TadD Flp pilus assembl 98.8 5.1E-06 1.1E-10 59.5 20.1 160 55-224 70-229 (257)
91 PF12569 NARP1: NMDA receptor- 98.8 1.3E-05 2.7E-10 65.0 23.9 130 88-225 196-333 (517)
92 PRK14720 transcript cleavage f 98.8 7.6E-06 1.7E-10 69.6 23.4 216 13-243 28-268 (906)
93 KOG1128 Uncharacterized conser 98.8 6.4E-07 1.4E-11 72.5 15.7 183 16-209 424-635 (777)
94 PRK15359 type III secretion sy 98.8 2E-06 4.3E-11 57.8 16.0 95 54-156 27-121 (144)
95 PRK15179 Vi polysaccharide bio 98.8 3.3E-06 7.1E-11 70.7 20.3 136 82-226 82-217 (694)
96 COG5010 TadD Flp pilus assembl 98.8 3.7E-06 8E-11 60.2 17.6 160 20-189 70-229 (257)
97 TIGR00756 PPR pentatricopeptid 98.7 3.1E-08 6.7E-13 49.0 4.2 34 18-51 2-35 (35)
98 KOG1915 Cell cycle control pro 98.7 2.2E-05 4.7E-10 61.2 21.1 213 15-240 321-548 (677)
99 KOG2047 mRNA splicing factor [ 98.7 2.1E-05 4.6E-10 63.3 21.6 235 17-257 249-536 (835)
100 PF13812 PPR_3: Pentatricopept 98.7 3.6E-08 7.9E-13 48.4 4.1 33 17-49 2-34 (34)
101 PF09976 TPR_21: Tetratricopep 98.7 3E-06 6.6E-11 57.1 14.0 128 16-153 12-144 (145)
102 KOG4162 Predicted calmodulin-b 98.6 2.7E-05 5.9E-10 63.8 20.8 230 22-256 484-778 (799)
103 PF10037 MRP-S27: Mitochondria 98.6 8.5E-07 1.9E-11 69.3 12.0 127 8-140 58-186 (429)
104 KOG3060 Uncharacterized conser 98.6 5.6E-05 1.2E-09 54.1 22.7 190 29-228 25-222 (289)
105 KOG1174 Anaphase-promoting com 98.6 1.1E-05 2.4E-10 61.7 17.2 213 25-250 275-522 (564)
106 TIGR02552 LcrH_SycD type III s 98.6 5.2E-06 1.1E-10 55.2 14.4 52 60-112 26-77 (135)
107 KOG1125 TPR repeat-containing 98.6 4.8E-06 1E-10 65.9 15.9 184 61-255 295-521 (579)
108 KOG2047 mRNA splicing factor [ 98.6 7.4E-05 1.6E-09 60.4 22.4 31 126-156 247-277 (835)
109 TIGR02552 LcrH_SycD type III s 98.6 7.2E-06 1.6E-10 54.5 14.7 108 126-237 16-123 (135)
110 PF09976 TPR_21: Tetratricopep 98.6 7.7E-06 1.7E-10 55.1 14.9 118 99-222 24-143 (145)
111 KOG0624 dsRNA-activated protei 98.6 3.8E-05 8.2E-10 57.5 19.1 221 24-257 114-366 (504)
112 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.3E-06 9.3E-11 65.1 15.0 123 20-154 173-295 (395)
113 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 5.2E-06 1.1E-10 64.6 15.2 124 53-189 171-295 (395)
114 TIGR00756 PPR pentatricopeptid 98.6 1.5E-07 3.2E-12 46.5 4.4 33 129-161 2-34 (35)
115 PF10037 MRP-S27: Mitochondria 98.6 2.1E-06 4.6E-11 67.1 12.5 121 48-174 63-185 (429)
116 PF08579 RPM2: Mitochondrial r 98.6 1.9E-06 4.1E-11 53.5 9.6 80 19-98 28-116 (120)
117 PF13812 PPR_3: Pentatricopept 98.6 1.6E-07 3.5E-12 46.0 4.2 33 128-160 2-34 (34)
118 COG4783 Putative Zn-dependent 98.5 0.00021 4.5E-09 56.0 23.4 200 13-242 271-472 (484)
119 KOG2376 Signal recognition par 98.5 8.3E-05 1.8E-09 59.4 20.4 216 20-257 16-249 (652)
120 KOG4340 Uncharacterized conser 98.5 1.3E-05 2.7E-10 58.8 14.3 198 16-228 10-209 (459)
121 PLN02789 farnesyltranstransfer 98.5 0.00021 4.7E-09 54.6 23.4 199 15-224 70-300 (320)
122 COG4783 Putative Zn-dependent 98.5 4.9E-05 1.1E-09 59.3 18.2 148 24-200 314-462 (484)
123 KOG1156 N-terminal acetyltrans 98.5 4.5E-05 9.8E-10 61.5 18.1 187 29-226 54-248 (700)
124 PRK04841 transcriptional regul 98.5 0.00012 2.7E-09 64.5 22.9 238 18-257 493-756 (903)
125 PF08579 RPM2: Mitochondrial r 98.5 7.1E-06 1.5E-10 51.0 10.6 82 128-209 26-116 (120)
126 KOG3081 Vesicle coat complex C 98.5 0.00018 3.8E-09 52.1 21.4 173 37-226 94-271 (299)
127 PRK14720 transcript cleavage f 98.5 3.2E-05 7E-10 66.0 17.4 201 49-257 29-248 (906)
128 KOG1914 mRNA cleavage and poly 98.4 0.00051 1.1E-08 54.7 22.5 65 14-80 18-82 (656)
129 KOG0624 dsRNA-activated protei 98.4 0.0001 2.2E-09 55.3 17.1 243 3-257 56-332 (504)
130 PF01535 PPR: PPR repeat; Int 98.4 3.9E-07 8.5E-12 43.5 3.2 29 18-46 2-30 (31)
131 KOG3785 Uncharacterized conser 98.4 2E-05 4.3E-10 59.2 13.1 190 56-256 290-485 (557)
132 KOG2053 Mitochondrial inherita 98.4 0.00084 1.8E-08 56.5 22.8 200 19-228 44-257 (932)
133 PRK04841 transcriptional regul 98.4 0.00046 9.9E-09 61.0 23.2 232 23-257 459-716 (903)
134 KOG2053 Mitochondrial inherita 98.3 0.00065 1.4E-08 57.1 21.9 216 26-254 19-248 (932)
135 KOG3617 WD40 and TPR repeat-co 98.3 3.2E-05 6.9E-10 64.3 14.3 209 15-257 756-992 (1416)
136 TIGR02795 tol_pal_ybgF tol-pal 98.3 7.2E-05 1.6E-09 48.3 13.6 26 130-155 79-104 (119)
137 KOG1156 N-terminal acetyltrans 98.3 0.00037 8E-09 56.5 19.3 227 19-257 11-244 (700)
138 KOG3060 Uncharacterized conser 98.3 0.00046 9.9E-09 49.6 20.0 176 63-248 24-204 (289)
139 PF05843 Suf: Suppressor of fo 98.3 6E-05 1.3E-09 56.7 14.4 130 53-191 3-136 (280)
140 KOG2376 Signal recognition par 98.3 0.0011 2.5E-08 53.2 23.7 228 15-245 109-505 (652)
141 PRK10866 outer membrane biogen 98.3 0.00059 1.3E-08 50.2 18.9 176 54-255 35-235 (243)
142 cd00189 TPR Tetratricopeptide 98.3 3.7E-05 8E-10 47.1 11.2 96 18-115 2-97 (100)
143 TIGR02795 tol_pal_ybgF tol-pal 98.3 6.1E-05 1.3E-09 48.7 12.4 100 128-227 3-106 (119)
144 PF12895 Apc3: Anaphase-promot 98.3 5.4E-06 1.2E-10 50.1 6.7 80 65-152 3-83 (84)
145 PF01535 PPR: PPR repeat; Int 98.3 1.4E-06 3.1E-11 41.5 3.3 29 129-157 2-30 (31)
146 KOG4162 Predicted calmodulin-b 98.2 0.0006 1.3E-08 56.4 19.4 210 12-225 319-541 (799)
147 cd00189 TPR Tetratricopeptide 98.2 5E-05 1.1E-09 46.5 11.1 96 129-226 2-97 (100)
148 PF05843 Suf: Suppressor of fo 98.2 2.3E-05 4.9E-10 58.9 11.0 128 128-258 2-133 (280)
149 PF06239 ECSIT: Evolutionarily 98.2 1.6E-05 3.4E-10 55.7 9.2 91 12-102 43-154 (228)
150 KOG0548 Molecular co-chaperone 98.2 0.0014 3E-08 52.1 20.8 204 19-227 227-456 (539)
151 KOG3785 Uncharacterized conser 98.2 0.00013 2.8E-09 55.0 14.3 196 18-226 287-490 (557)
152 PF14938 SNAP: Soluble NSF att 98.2 0.00019 4.1E-09 54.2 15.7 203 54-258 38-263 (282)
153 KOG0985 Vesicle coat protein c 98.2 0.00033 7.2E-09 59.8 17.9 198 17-245 1105-1326(1666)
154 KOG1914 mRNA cleavage and poly 98.2 0.0018 3.9E-08 51.7 22.4 186 32-225 309-500 (656)
155 KOG3616 Selective LIM binding 98.2 0.00033 7.2E-09 57.9 16.7 106 136-254 741-846 (1636)
156 CHL00033 ycf3 photosystem I as 98.2 0.00015 3.3E-09 50.2 13.2 114 32-152 15-138 (168)
157 PRK02603 photosystem I assembl 98.2 0.00039 8.4E-09 48.4 15.2 90 51-147 35-126 (172)
158 CHL00033 ycf3 photosystem I as 98.2 0.00011 2.4E-09 50.9 12.4 67 86-156 35-101 (168)
159 PF14938 SNAP: Soluble NSF att 98.2 0.00056 1.2E-08 51.7 16.9 206 16-224 35-264 (282)
160 PF12895 Apc3: Anaphase-promot 98.1 7.3E-06 1.6E-10 49.5 5.5 81 29-111 2-83 (84)
161 PRK02603 photosystem I assembl 98.1 0.00042 9.2E-09 48.2 15.0 92 86-182 35-126 (172)
162 PRK15363 pathogenicity island 98.1 0.00014 3E-09 48.7 11.7 98 51-156 35-132 (157)
163 KOG4340 Uncharacterized conser 98.1 8.9E-05 1.9E-09 54.5 11.5 196 46-257 5-203 (459)
164 PRK10866 outer membrane biogen 98.1 0.00079 1.7E-08 49.5 16.7 80 89-172 35-114 (243)
165 PLN03088 SGT1, suppressor of 98.1 0.00028 6E-09 55.1 14.6 94 132-227 7-100 (356)
166 PF06239 ECSIT: Evolutionarily 98.1 7.2E-05 1.6E-09 52.5 10.1 88 126-213 46-154 (228)
167 PLN03088 SGT1, suppressor of 98.1 0.00025 5.4E-09 55.4 14.1 91 93-191 9-99 (356)
168 PF13525 YfiO: Outer membrane 98.1 0.0015 3.3E-08 46.7 18.9 59 22-80 11-71 (203)
169 PRK15363 pathogenicity island 98.1 0.00021 4.6E-09 47.8 11.6 98 16-115 35-132 (157)
170 KOG0985 Vesicle coat protein c 98.1 0.0017 3.6E-08 55.8 18.9 210 15-256 1132-1365(1666)
171 KOG3616 Selective LIM binding 98.0 0.0002 4.2E-09 59.2 12.6 108 59-185 740-847 (1636)
172 PRK10153 DNA-binding transcrip 98.0 0.0016 3.4E-08 53.4 17.8 145 81-236 332-490 (517)
173 PRK10153 DNA-binding transcrip 98.0 0.0011 2.4E-08 54.2 16.9 144 46-200 332-489 (517)
174 PF12921 ATP13: Mitochondrial 98.0 0.00026 5.6E-09 46.1 10.6 91 85-175 1-101 (126)
175 KOG1127 TPR repeat-containing 98.0 0.0015 3.2E-08 55.9 17.3 214 32-256 474-695 (1238)
176 PF12688 TPR_5: Tetratrico pep 97.9 0.0016 3.4E-08 42.0 14.2 17 95-111 47-63 (120)
177 PF12688 TPR_5: Tetratrico pep 97.9 0.0018 4E-08 41.7 14.1 92 92-189 7-102 (120)
178 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.0043 9.3E-08 48.7 17.2 78 14-94 40-117 (660)
179 PF03704 BTAD: Bacterial trans 97.9 0.0015 3.2E-08 44.1 13.0 59 129-188 64-122 (146)
180 KOG1127 TPR repeat-containing 97.8 0.0017 3.8E-08 55.5 15.3 163 17-190 493-658 (1238)
181 KOG0548 Molecular co-chaperone 97.8 0.002 4.4E-08 51.2 14.6 193 54-257 227-451 (539)
182 PF14559 TPR_19: Tetratricopep 97.8 0.00012 2.5E-09 42.2 6.2 52 174-226 3-54 (68)
183 KOG0553 TPR repeat-containing 97.8 0.00061 1.3E-08 50.2 10.9 101 96-206 91-191 (304)
184 PF14559 TPR_19: Tetratricopep 97.8 0.00019 4E-09 41.3 6.8 64 138-204 2-65 (68)
185 KOG2796 Uncharacterized conser 97.8 0.0065 1.4E-07 44.3 15.4 135 55-191 181-315 (366)
186 KOG0553 TPR repeat-containing 97.8 0.0011 2.3E-08 49.0 11.7 105 135-243 89-193 (304)
187 KOG3617 WD40 and TPR repeat-co 97.7 0.0015 3.4E-08 54.8 13.4 61 128-188 913-993 (1416)
188 PF13432 TPR_16: Tetratricopep 97.7 0.0003 6.5E-09 40.0 7.0 57 23-80 4-60 (65)
189 PF13432 TPR_16: Tetratricopep 97.7 0.00052 1.1E-08 39.0 7.9 58 92-156 3-60 (65)
190 PF13414 TPR_11: TPR repeat; P 97.7 0.00046 1E-08 39.8 7.6 63 86-155 3-66 (69)
191 PRK10803 tol-pal system protei 97.7 0.0035 7.5E-08 46.6 13.9 98 127-226 143-246 (263)
192 PF13414 TPR_11: TPR repeat; P 97.7 0.00039 8.3E-09 40.1 7.1 61 52-113 4-65 (69)
193 PF04840 Vps16_C: Vps16, C-ter 97.7 0.014 3E-07 44.8 17.1 106 129-254 179-284 (319)
194 PRK10803 tol-pal system protei 97.7 0.0038 8.2E-08 46.5 13.4 91 62-156 154-246 (263)
195 PF03704 BTAD: Bacterial trans 97.6 0.00064 1.4E-08 45.9 8.5 67 53-120 64-135 (146)
196 KOG2796 Uncharacterized conser 97.6 0.013 2.8E-07 42.8 16.2 133 88-227 179-316 (366)
197 COG4700 Uncharacterized protei 97.6 0.011 2.4E-07 40.9 18.1 155 58-222 63-218 (251)
198 PF13424 TPR_12: Tetratricopep 97.6 0.00043 9.3E-09 41.0 6.3 69 86-155 5-74 (78)
199 KOG3941 Intermediate in Toll s 97.6 0.00099 2.2E-08 48.8 8.9 98 5-102 54-174 (406)
200 PF13525 YfiO: Outer membrane 97.6 0.014 3.1E-07 41.7 18.0 170 55-249 9-195 (203)
201 COG4235 Cytochrome c biogenesi 97.6 0.015 3.2E-07 43.3 14.9 100 126-227 155-257 (287)
202 COG4235 Cytochrome c biogenesi 97.5 0.024 5.2E-07 42.2 15.0 98 159-258 153-253 (287)
203 PF12921 ATP13: Mitochondrial 97.4 0.0067 1.4E-07 39.6 10.7 101 126-246 1-102 (126)
204 PRK15331 chaperone protein Sic 97.4 0.02 4.3E-07 38.8 12.5 90 59-156 45-134 (165)
205 PF13371 TPR_9: Tetratricopept 97.3 0.003 6.5E-08 36.8 7.6 53 172-225 5-57 (73)
206 PF13424 TPR_12: Tetratricopep 97.3 0.0011 2.3E-08 39.3 5.6 26 18-43 7-32 (78)
207 PF13371 TPR_9: Tetratricopept 97.3 0.0035 7.6E-08 36.5 7.6 64 134-200 2-65 (73)
208 KOG1130 Predicted G-alpha GTPa 97.2 0.0053 1.2E-07 47.6 9.5 129 128-256 196-339 (639)
209 PF13170 DUF4003: Protein of u 97.1 0.072 1.6E-06 40.5 15.5 132 32-169 78-224 (297)
210 COG4700 Uncharacterized protei 97.1 0.045 9.9E-07 37.9 18.8 133 48-187 86-218 (251)
211 smart00299 CLH Clathrin heavy 97.1 0.039 8.4E-07 36.8 15.1 85 20-112 11-95 (140)
212 PF04053 Coatomer_WDAD: Coatom 97.1 0.031 6.7E-07 45.0 13.1 159 23-223 268-428 (443)
213 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.1 2.2E-06 41.4 15.1 148 16-173 397-546 (660)
214 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.045 9.8E-07 43.4 13.1 65 14-80 73-141 (453)
215 KOG2041 WD40 repeat protein [G 97.0 0.035 7.7E-07 46.2 12.8 195 2-223 680-904 (1189)
216 PF10300 DUF3808: Protein of u 97.0 0.057 1.2E-06 44.0 14.0 162 93-257 195-372 (468)
217 PF04840 Vps16_C: Vps16, C-ter 96.9 0.12 2.6E-06 39.8 18.3 111 87-223 178-288 (319)
218 KOG3941 Intermediate in Toll s 96.9 0.011 2.4E-07 43.6 8.6 98 126-223 66-185 (406)
219 COG1729 Uncharacterized protei 96.9 0.038 8.2E-07 40.7 11.0 98 17-115 143-244 (262)
220 PF13512 TPR_18: Tetratricopep 96.9 0.064 1.4E-06 35.6 12.3 86 15-100 9-96 (142)
221 PRK15331 chaperone protein Sic 96.9 0.073 1.6E-06 36.2 14.1 96 129-226 39-134 (165)
222 COG1729 Uncharacterized protei 96.8 0.057 1.2E-06 39.7 11.3 97 129-226 144-244 (262)
223 KOG0550 Molecular chaperone (D 96.8 0.1 2.2E-06 40.8 12.9 151 94-256 177-345 (486)
224 COG3898 Uncharacterized membra 96.7 0.2 4.4E-06 39.0 20.4 97 14-114 116-216 (531)
225 PF13512 TPR_18: Tetratricopep 96.6 0.097 2.1E-06 34.7 12.4 29 128-156 48-76 (142)
226 COG4105 ComL DNA uptake lipopr 96.6 0.17 3.6E-06 37.1 20.4 166 52-226 36-233 (254)
227 PF13281 DUF4071: Domain of un 96.6 0.24 5.2E-06 38.8 19.9 169 51-227 141-335 (374)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.046 9.9E-07 43.4 10.5 99 124-228 72-176 (453)
229 PF04053 Coatomer_WDAD: Coatom 96.6 0.082 1.8E-06 42.7 12.0 134 16-188 295-428 (443)
230 PF10602 RPN7: 26S proteasome 96.6 0.098 2.1E-06 36.5 11.0 97 17-113 37-140 (177)
231 PF13281 DUF4071: Domain of un 96.5 0.29 6.4E-06 38.3 19.4 168 16-191 141-334 (374)
232 PF08631 SPO22: Meiosis protei 96.5 0.26 5.6E-06 37.3 22.7 222 26-256 3-270 (278)
233 KOG0543 FKBP-type peptidyl-pro 96.4 0.29 6.3E-06 38.2 13.5 129 94-225 216-354 (397)
234 PF10602 RPN7: 26S proteasome 96.4 0.14 3.1E-06 35.7 11.0 65 87-155 37-101 (177)
235 PF13170 DUF4003: Protein of u 96.4 0.3 6.5E-06 37.2 17.8 136 67-207 78-227 (297)
236 COG3629 DnrI DNA-binding trans 96.3 0.087 1.9E-06 39.4 10.1 77 18-95 155-236 (280)
237 PF10300 DUF3808: Protein of u 96.3 0.47 1E-05 38.9 17.5 162 22-189 194-374 (468)
238 KOG0543 FKBP-type peptidyl-pro 96.3 0.21 4.5E-06 39.0 12.0 124 59-191 216-355 (397)
239 KOG2610 Uncharacterized conser 96.1 0.36 7.8E-06 37.0 12.4 149 30-187 117-272 (491)
240 COG3629 DnrI DNA-binding trans 96.1 0.13 2.8E-06 38.5 10.1 78 128-206 154-236 (280)
241 KOG1130 Predicted G-alpha GTPa 96.1 0.02 4.4E-07 44.6 6.0 238 14-257 13-300 (639)
242 COG3118 Thioredoxin domain-con 96.1 0.42 9E-06 35.9 15.2 145 60-213 143-288 (304)
243 COG3118 Thioredoxin domain-con 96.0 0.44 9.6E-06 35.7 17.1 154 93-255 141-295 (304)
244 PF07035 Mic1: Colon cancer-as 95.9 0.32 6.9E-06 33.4 15.3 29 74-102 17-45 (167)
245 PF13428 TPR_14: Tetratricopep 95.9 0.046 1E-06 28.1 5.1 29 128-156 2-30 (44)
246 KOG2114 Vacuolar assembly/sort 95.8 0.73 1.6E-05 39.6 14.0 174 21-223 339-516 (933)
247 KOG1538 Uncharacterized conser 95.8 0.96 2.1E-05 38.0 15.8 84 164-258 749-843 (1081)
248 COG4105 ComL DNA uptake lipopr 95.8 0.5 1.1E-05 34.7 18.4 164 86-254 35-226 (254)
249 KOG2114 Vacuolar assembly/sort 95.8 0.45 9.7E-06 40.8 12.7 141 24-188 376-516 (933)
250 KOG1941 Acetylcholine receptor 95.8 0.56 1.2E-05 36.4 12.0 226 28-256 18-270 (518)
251 PF13428 TPR_14: Tetratricopep 95.7 0.049 1.1E-06 28.0 4.8 27 19-45 4-30 (44)
252 KOG4555 TPR repeat-containing 95.7 0.32 6.9E-06 31.8 10.1 93 24-117 51-146 (175)
253 KOG2280 Vacuolar assembly/sort 95.7 1.2 2.5E-05 38.0 17.0 64 16-79 507-574 (829)
254 PF13176 TPR_7: Tetratricopept 95.5 0.045 9.7E-07 26.7 3.9 23 19-41 2-24 (36)
255 KOG2280 Vacuolar assembly/sort 95.5 1.4 3E-05 37.5 15.9 108 128-254 685-792 (829)
256 COG3898 Uncharacterized membra 95.3 1.1 2.3E-05 35.3 19.9 127 19-156 85-217 (531)
257 PF09205 DUF1955: Domain of un 95.2 0.51 1.1E-05 30.9 13.7 59 133-192 92-150 (161)
258 smart00299 CLH Clathrin heavy 95.2 0.54 1.2E-05 31.3 15.8 127 89-244 10-137 (140)
259 PF13176 TPR_7: Tetratricopept 95.2 0.068 1.5E-06 26.0 4.0 24 130-153 2-25 (36)
260 cd00923 Cyt_c_Oxidase_Va Cytoc 95.1 0.27 5.9E-06 30.0 7.0 43 182-224 27-69 (103)
261 KOG2610 Uncharacterized conser 95.1 1.2 2.5E-05 34.4 13.2 156 63-223 115-273 (491)
262 PF07035 Mic1: Colon cancer-as 95.1 0.71 1.5E-05 31.8 15.3 136 35-190 13-148 (167)
263 PF07079 DUF1347: Protein of u 95.0 1.5 3.2E-05 35.2 18.8 143 26-173 16-178 (549)
264 PRK11906 transcriptional regul 95.0 1.5 3.3E-05 35.3 16.1 160 87-255 252-430 (458)
265 COG0457 NrfG FOG: TPR repeat [ 94.8 0.97 2.1E-05 32.3 24.1 167 52-226 60-231 (291)
266 PF11207 DUF2989: Protein of u 94.8 0.52 1.1E-05 33.3 8.8 78 172-251 117-197 (203)
267 KOG1538 Uncharacterized conser 94.7 2.2 4.8E-05 36.0 15.4 198 8-226 627-846 (1081)
268 PF02284 COX5A: Cytochrome c o 94.7 0.57 1.2E-05 29.0 8.6 61 180-241 28-88 (108)
269 COG4649 Uncharacterized protei 94.6 0.96 2.1E-05 31.3 14.1 139 86-230 59-200 (221)
270 KOG4570 Uncharacterized conser 94.6 0.26 5.6E-06 37.3 7.3 109 5-115 53-164 (418)
271 PF09205 DUF1955: Domain of un 94.6 0.77 1.7E-05 30.1 13.3 124 96-229 12-152 (161)
272 KOG0550 Molecular chaperone (D 94.5 2 4.3E-05 34.1 15.8 171 14-191 166-350 (486)
273 KOG1585 Protein required for f 94.4 1.4 3.1E-05 32.3 15.1 201 16-221 31-251 (308)
274 KOG4570 Uncharacterized conser 94.4 1.2 2.6E-05 33.9 10.3 104 45-156 58-164 (418)
275 COG0457 NrfG FOG: TPR repeat [ 94.3 1.3 2.8E-05 31.6 24.6 204 16-226 59-265 (291)
276 KOG4555 TPR repeat-containing 94.3 0.93 2E-05 29.7 10.5 94 60-157 52-145 (175)
277 PF09613 HrpB1_HrpK: Bacterial 94.1 1.2 2.7E-05 30.3 13.2 110 133-249 16-126 (160)
278 PF00637 Clathrin: Region in C 94.0 0.026 5.6E-07 37.8 1.2 84 22-112 13-96 (143)
279 KOG2041 WD40 repeat protein [G 94.0 3.5 7.7E-05 35.2 15.6 47 202-248 1026-1073(1189)
280 KOG1550 Extracellular protein 94.0 3.3 7.2E-05 34.9 14.3 150 67-227 228-394 (552)
281 cd00923 Cyt_c_Oxidase_Va Cytoc 93.9 0.81 1.7E-05 28.1 7.1 63 142-205 22-84 (103)
282 KOG1941 Acetylcholine receptor 93.9 2.5 5.4E-05 33.0 12.1 204 18-223 45-272 (518)
283 KOG1920 IkappaB kinase complex 93.5 4.4 9.5E-05 36.7 13.4 80 93-190 946-1027(1265)
284 PF11207 DUF2989: Protein of u 93.5 1.3 2.8E-05 31.4 8.6 78 27-106 118-198 (203)
285 PF13374 TPR_10: Tetratricopep 93.4 0.28 6E-06 24.4 4.2 27 17-43 3-29 (42)
286 KOG1920 IkappaB kinase complex 93.4 6.1 0.00013 35.9 14.9 87 128-224 940-1026(1265)
287 PF13374 TPR_10: Tetratricopep 93.3 0.31 6.8E-06 24.2 4.3 28 128-155 3-30 (42)
288 PF02259 FAT: FAT domain; Int 93.3 3.2 7E-05 32.5 12.7 193 22-226 4-213 (352)
289 PF04184 ST7: ST7 protein; In 93.3 3.9 8.5E-05 33.4 20.5 139 22-169 174-338 (539)
290 PF08631 SPO22: Meiosis protei 93.1 3 6.5E-05 31.6 21.8 198 18-224 38-273 (278)
291 PF13431 TPR_17: Tetratricopep 93.0 0.17 3.7E-06 24.3 2.8 22 85-106 12-33 (34)
292 PF00515 TPR_1: Tetratricopept 93.0 0.39 8.4E-06 22.7 4.1 27 18-44 3-29 (34)
293 PF00637 Clathrin: Region in C 92.7 0.021 4.5E-07 38.3 -0.9 110 132-257 12-121 (143)
294 PF13929 mRNA_stabil: mRNA sta 92.4 3.7 8.1E-05 31.0 15.3 57 128-184 203-260 (292)
295 PF07719 TPR_2: Tetratricopept 92.4 0.51 1.1E-05 22.2 4.1 27 18-44 3-29 (34)
296 PF00515 TPR_1: Tetratricopept 92.4 0.6 1.3E-05 22.0 4.4 29 128-156 2-30 (34)
297 PF07079 DUF1347: Protein of u 92.3 5.2 0.00011 32.4 19.3 29 16-44 298-326 (549)
298 PF13431 TPR_17: Tetratricopep 92.2 0.17 3.7E-06 24.3 2.2 22 231-252 12-33 (34)
299 TIGR03504 FimV_Cterm FimV C-te 92.2 0.64 1.4E-05 23.9 4.4 25 203-227 5-29 (44)
300 KOG0276 Vesicle coat complex C 91.9 6.9 0.00015 32.9 13.2 26 128-153 667-692 (794)
301 PF04184 ST7: ST7 protein; In 91.9 6.2 0.00013 32.3 15.2 59 132-190 264-323 (539)
302 PF09613 HrpB1_HrpK: Bacterial 91.7 3.1 6.6E-05 28.4 13.1 16 97-112 55-70 (160)
303 PF02284 COX5A: Cytochrome c o 91.5 2.2 4.8E-05 26.5 9.0 46 69-114 28-73 (108)
304 PF07719 TPR_2: Tetratricopept 91.5 0.8 1.7E-05 21.5 4.4 29 128-156 2-30 (34)
305 PF07163 Pex26: Pex26 protein; 91.4 4.8 0.0001 30.3 9.9 91 19-109 86-181 (309)
306 PRK11906 transcriptional regul 91.4 6.7 0.00015 31.8 16.9 144 67-222 274-432 (458)
307 COG1747 Uncharacterized N-term 91.4 7.2 0.00016 32.2 19.4 167 48-227 63-235 (711)
308 COG4455 ImpE Protein of avirul 91.4 3.4 7.4E-05 29.9 8.5 77 129-206 3-81 (273)
309 KOG0686 COP9 signalosome, subu 91.0 6.8 0.00015 31.2 14.4 179 17-204 151-351 (466)
310 KOG4234 TPR repeat-containing 90.6 4.8 0.0001 28.8 9.6 99 94-197 103-201 (271)
311 COG4455 ImpE Protein of avirul 90.6 5 0.00011 29.1 8.7 77 18-95 3-81 (273)
312 PF13929 mRNA_stabil: mRNA sta 90.3 6.4 0.00014 29.8 13.1 132 32-168 144-284 (292)
313 KOG4077 Cytochrome c oxidase, 90.3 3.6 7.7E-05 26.8 7.2 37 188-224 75-111 (149)
314 PF13174 TPR_6: Tetratricopept 90.3 0.79 1.7E-05 21.3 3.6 25 132-156 5-29 (33)
315 PF13181 TPR_8: Tetratricopept 90.2 1.2 2.5E-05 20.9 4.3 28 128-155 2-29 (34)
316 PRK15180 Vi polysaccharide bio 90.1 5.5 0.00012 32.5 9.6 90 134-225 330-419 (831)
317 TIGR02561 HrpB1_HrpK type III 90.0 4.3 9.3E-05 27.3 12.3 53 136-192 19-74 (153)
318 PHA02875 ankyrin repeat protei 90.0 3.5 7.6E-05 33.2 9.0 129 6-150 20-155 (413)
319 PF07721 TPR_4: Tetratricopept 89.9 0.66 1.4E-05 20.5 2.8 23 129-151 3-25 (26)
320 KOG1586 Protein required for f 89.8 6.3 0.00014 28.9 13.2 20 207-226 164-183 (288)
321 KOG1550 Extracellular protein 89.8 11 0.00025 31.8 19.3 178 32-227 228-427 (552)
322 COG3947 Response regulator con 89.4 7.8 0.00017 29.5 13.5 178 71-258 107-339 (361)
323 COG1747 Uncharacterized N-term 89.2 11 0.00025 31.1 19.6 184 15-207 65-249 (711)
324 PF13181 TPR_8: Tetratricopept 88.9 1.5 3.2E-05 20.5 4.4 27 88-114 3-29 (34)
325 TIGR03504 FimV_Cterm FimV C-te 88.9 1.4 2.9E-05 22.7 3.8 24 22-45 5-28 (44)
326 KOG0276 Vesicle coat complex C 88.8 11 0.00023 31.9 10.5 79 88-190 616-694 (794)
327 PF10579 Rapsyn_N: Rapsyn N-te 88.8 2.1 4.7E-05 25.2 5.0 53 93-150 14-66 (80)
328 PF07163 Pex26: Pex26 protein; 88.7 8.7 0.00019 29.0 10.8 93 128-220 84-181 (309)
329 PF02259 FAT: FAT domain; Int 88.3 11 0.00023 29.6 20.6 168 15-190 30-212 (352)
330 COG4649 Uncharacterized protei 88.3 6.8 0.00015 27.3 13.5 139 51-195 59-200 (221)
331 COG2909 MalT ATP-dependent tra 88.2 18 0.00039 32.1 17.1 205 18-222 459-684 (894)
332 PF04097 Nic96: Nup93/Nic96; 88.1 15 0.00032 31.7 11.5 41 22-63 117-157 (613)
333 PF06552 TOM20_plant: Plant sp 87.9 5.2 0.00011 28.0 7.2 26 180-207 98-123 (186)
334 KOG1464 COP9 signalosome, subu 87.7 10 0.00022 28.6 13.0 204 45-252 20-251 (440)
335 PF10579 Rapsyn_N: Rapsyn N-te 87.6 2.3 5E-05 25.0 4.6 44 140-183 19-64 (80)
336 COG0735 Fur Fe2+/Zn2+ uptake r 87.5 4.4 9.5E-05 27.3 6.7 64 184-248 8-71 (145)
337 KOG4077 Cytochrome c oxidase, 87.4 6.1 0.00013 25.8 6.9 59 145-204 67-125 (149)
338 COG0735 Fur Fe2+/Zn2+ uptake r 87.4 6.3 0.00014 26.5 7.4 64 107-177 7-70 (145)
339 KOG1585 Protein required for f 87.1 10 0.00022 28.1 14.5 193 52-254 32-249 (308)
340 PF14689 SPOB_a: Sensor_kinase 87.0 3 6.4E-05 23.3 4.8 46 178-225 6-51 (62)
341 PRK15180 Vi polysaccharide bio 87.0 16 0.00034 30.1 14.7 125 23-157 296-421 (831)
342 COG2976 Uncharacterized protei 86.6 9.4 0.0002 27.1 13.3 92 94-191 97-188 (207)
343 TIGR02561 HrpB1_HrpK type III 86.2 8.2 0.00018 26.1 11.7 19 96-114 54-72 (153)
344 PF11848 DUF3368: Domain of un 86.1 3.4 7.5E-05 21.6 4.8 33 27-59 13-45 (48)
345 PRK10564 maltose regulon perip 84.7 3.7 8.1E-05 31.2 5.7 46 193-238 252-298 (303)
346 PF11663 Toxin_YhaV: Toxin wit 84.4 1.6 3.4E-05 28.7 3.2 32 63-96 107-138 (140)
347 COG4785 NlpI Lipoprotein NlpI, 84.1 14 0.0003 26.9 14.1 31 198-228 238-268 (297)
348 PF11846 DUF3366: Domain of un 83.3 9.2 0.0002 27.1 7.1 61 55-115 112-173 (193)
349 KOG0890 Protein kinase of the 83.2 27 0.00059 34.7 11.4 119 56-189 1388-1510(2382)
350 PRK10564 maltose regulon perip 83.2 3.3 7.1E-05 31.5 4.9 29 55-83 261-289 (303)
351 PF11846 DUF3366: Domain of un 83.2 8.7 0.00019 27.3 7.0 33 194-226 141-173 (193)
352 PF13762 MNE1: Mitochondrial s 83.0 12 0.00025 25.2 10.9 87 127-213 39-131 (145)
353 TIGR02508 type_III_yscG type I 82.5 9.5 0.00021 23.8 8.4 87 142-236 20-106 (115)
354 PF07575 Nucleopor_Nup85: Nup8 82.2 8.8 0.00019 32.6 7.6 32 209-240 507-538 (566)
355 PF11817 Foie-gras_1: Foie gra 82.1 14 0.00031 27.4 8.0 61 128-188 179-244 (247)
356 PF11663 Toxin_YhaV: Toxin wit 81.9 2.2 4.8E-05 28.0 3.1 32 139-172 107-138 (140)
357 PHA02875 ankyrin repeat protei 81.5 24 0.00052 28.5 9.7 80 23-110 6-89 (413)
358 PF14689 SPOB_a: Sensor_kinase 80.8 7.8 0.00017 21.6 5.2 23 91-113 28-50 (62)
359 KOG4648 Uncharacterized conser 80.7 25 0.00054 27.6 8.6 88 59-155 105-193 (536)
360 PF11848 DUF3368: Domain of un 80.5 6.5 0.00014 20.6 4.9 30 209-238 14-43 (48)
361 KOG4507 Uncharacterized conser 80.5 24 0.00051 30.0 9.0 90 61-157 617-706 (886)
362 cd08819 CARD_MDA5_2 Caspase ac 80.3 11 0.00023 22.9 6.4 37 174-215 48-84 (88)
363 KOG1258 mRNA processing protei 80.3 35 0.00075 28.8 19.2 185 50-246 296-489 (577)
364 PRK09462 fur ferric uptake reg 80.1 15 0.00032 24.8 6.9 36 213-248 33-68 (148)
365 COG2976 Uncharacterized protei 80.1 19 0.00041 25.7 14.2 132 85-227 53-189 (207)
366 KOG3807 Predicted membrane pro 80.0 6 0.00013 30.6 5.3 60 56-115 280-340 (556)
367 KOG4648 Uncharacterized conser 80.0 22 0.00047 27.9 8.1 88 135-225 105-193 (536)
368 PF09454 Vps23_core: Vps23 cor 79.3 9 0.00019 21.7 4.7 34 13-46 5-38 (65)
369 smart00028 TPR Tetratricopepti 78.8 4.4 9.6E-05 17.7 3.7 27 129-155 3-29 (34)
370 PF11817 Foie-gras_1: Foie gra 78.7 24 0.00053 26.3 8.2 59 54-112 181-244 (247)
371 COG5108 RPO41 Mitochondrial DN 78.7 40 0.00086 29.2 9.8 76 91-173 33-114 (1117)
372 KOG1258 mRNA processing protei 78.6 40 0.00086 28.5 19.3 188 13-211 294-489 (577)
373 PF10345 Cohesin_load: Cohesin 78.5 43 0.00093 28.9 17.0 199 48-257 27-250 (608)
374 PRK11639 zinc uptake transcrip 78.5 17 0.00037 25.3 6.9 60 153-213 17-76 (169)
375 PF08424 NRDE-2: NRDE-2, neces 78.5 30 0.00064 27.0 16.8 119 102-228 47-185 (321)
376 COG5159 RPN6 26S proteasome re 78.4 28 0.0006 26.6 9.6 23 166-188 129-151 (421)
377 KOG4567 GTPase-activating prot 78.1 26 0.00056 27.0 7.9 70 147-221 263-342 (370)
378 COG4785 NlpI Lipoprotein NlpI, 78.0 24 0.00053 25.8 13.4 160 16-192 99-267 (297)
379 COG3947 Response regulator con 77.7 29 0.00064 26.6 17.1 71 164-235 281-356 (361)
380 KOG1586 Protein required for f 77.5 26 0.00057 25.9 12.5 132 26-159 44-186 (288)
381 cd00280 TRFH Telomeric Repeat 77.3 23 0.00049 25.0 7.8 65 143-210 85-156 (200)
382 PRK11619 lytic murein transgly 77.1 49 0.0011 28.8 21.4 230 14-257 127-371 (644)
383 KOG2063 Vacuolar assembly/sort 76.5 43 0.00093 30.2 9.9 118 128-245 505-639 (877)
384 KOG0890 Protein kinase of the 76.5 42 0.00091 33.6 10.4 150 91-252 1388-1538(2382)
385 KOG1464 COP9 signalosome, subu 75.9 32 0.0007 26.1 15.9 166 17-183 66-252 (440)
386 COG5159 RPN6 26S proteasome re 75.0 35 0.00076 26.1 11.0 142 21-163 8-165 (421)
387 KOG4567 GTPase-activating prot 74.8 35 0.00076 26.4 7.9 58 36-98 263-320 (370)
388 KOG2063 Vacuolar assembly/sort 74.5 67 0.0014 29.1 16.3 117 18-140 506-639 (877)
389 COG5108 RPO41 Mitochondrial DN 74.5 30 0.00066 29.9 8.2 72 21-95 33-112 (1117)
390 KOG0686 COP9 signalosome, subu 74.4 44 0.00096 26.9 11.8 67 86-156 150-216 (466)
391 KOG2066 Vacuolar assembly/sort 74.3 61 0.0013 28.6 11.5 26 200-225 508-533 (846)
392 PF13762 MNE1: Mitochondrial s 73.8 25 0.00053 23.8 12.3 102 77-180 28-133 (145)
393 cd08819 CARD_MDA5_2 Caspase ac 73.8 17 0.00037 22.0 6.8 67 34-106 20-86 (88)
394 PRK11639 zinc uptake transcrip 73.7 27 0.00059 24.2 8.1 63 111-180 16-78 (169)
395 KOG4234 TPR repeat-containing 73.4 32 0.00069 24.8 9.9 92 59-157 103-198 (271)
396 PF10366 Vps39_1: Vacuolar sor 73.0 21 0.00046 22.6 7.6 26 200-225 42-67 (108)
397 cd07153 Fur_like Ferric uptake 72.9 10 0.00022 24.2 4.5 35 213-247 16-50 (116)
398 PF04190 DUF410: Protein of un 72.8 38 0.00082 25.5 16.5 68 79-150 42-113 (260)
399 PF09454 Vps23_core: Vps23 cor 71.5 11 0.00025 21.3 3.8 51 48-99 5-55 (65)
400 PF07575 Nucleopor_Nup85: Nup8 70.6 21 0.00045 30.4 6.8 63 161-225 404-466 (566)
401 PF12862 Apc5: Anaphase-promot 70.4 22 0.00047 21.7 6.4 23 92-114 47-69 (94)
402 KOG2297 Predicted translation 70.1 49 0.0011 25.6 15.7 74 133-216 261-340 (412)
403 cd07153 Fur_like Ferric uptake 69.8 18 0.00039 23.0 5.1 46 22-67 6-51 (116)
404 KOG4507 Uncharacterized conser 69.8 71 0.0015 27.4 9.3 102 29-138 620-721 (886)
405 PF01475 FUR: Ferric uptake re 69.8 14 0.0003 23.8 4.5 46 21-66 12-57 (120)
406 PF01475 FUR: Ferric uptake re 69.2 9.5 0.00021 24.6 3.7 47 202-248 12-58 (120)
407 PF06552 TOM20_plant: Plant sp 69.0 38 0.00082 23.9 9.4 76 103-193 52-138 (186)
408 PF02847 MA3: MA3 domain; Int 67.3 29 0.00062 21.9 7.2 63 130-194 5-69 (113)
409 TIGR02508 type_III_yscG type I 67.3 28 0.00061 21.8 7.3 79 32-117 21-99 (115)
410 PF14669 Asp_Glu_race_2: Putat 67.1 44 0.00095 23.9 12.9 56 167-222 137-206 (233)
411 PF10345 Cohesin_load: Cohesin 66.0 89 0.0019 27.1 17.3 170 15-188 58-251 (608)
412 PF15297 CKAP2_C: Cytoskeleton 65.8 65 0.0014 25.4 10.0 62 179-242 120-185 (353)
413 PF10475 DUF2450: Protein of u 65.6 60 0.0013 25.0 9.9 114 91-221 103-221 (291)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 65.5 36 0.00077 22.3 8.4 44 104-152 81-124 (126)
415 KOG3364 Membrane protein invol 65.2 32 0.00069 23.0 5.3 64 128-191 33-100 (149)
416 smart00777 Mad3_BUB1_I Mad3/BU 65.0 37 0.00079 22.3 6.8 40 217-256 83-123 (125)
417 KOG2066 Vacuolar assembly/sort 64.8 1E+02 0.0022 27.3 14.6 151 23-190 363-533 (846)
418 PF04762 IKI3: IKI3 family; I 64.4 68 0.0015 29.4 8.9 159 91-256 699-873 (928)
419 PF12926 MOZART2: Mitotic-spin 63.8 30 0.00065 20.9 7.5 42 37-78 29-70 (88)
420 KOG0292 Vesicle coat complex C 63.6 44 0.00094 30.0 7.2 147 29-222 606-752 (1202)
421 PF08424 NRDE-2: NRDE-2, neces 63.4 70 0.0015 25.0 17.0 119 67-193 47-185 (321)
422 PF12862 Apc5: Anaphase-promot 62.4 33 0.00072 20.9 6.7 53 173-225 9-69 (94)
423 KOG2659 LisH motif-containing 61.7 62 0.0013 23.8 9.5 97 13-111 23-128 (228)
424 PRK09687 putative lyase; Provi 61.3 72 0.0016 24.4 21.8 81 13-99 34-118 (280)
425 PRK09687 putative lyase; Provi 60.9 73 0.0016 24.4 24.1 203 15-244 67-279 (280)
426 PF03745 DUF309: Domain of unk 60.8 28 0.0006 19.5 5.6 47 27-73 10-61 (62)
427 COG2909 MalT ATP-dependent tra 60.5 1.3E+02 0.0028 27.2 18.5 93 62-156 426-526 (894)
428 PF10155 DUF2363: Uncharacteri 60.3 46 0.001 21.9 9.7 18 171-188 107-124 (126)
429 PF04910 Tcf25: Transcriptiona 60.1 88 0.0019 25.0 16.8 134 15-155 39-221 (360)
430 PRK09462 fur ferric uptake reg 59.8 51 0.0011 22.2 7.6 61 41-102 7-68 (148)
431 PF11838 ERAP1_C: ERAP1-like C 58.9 82 0.0018 24.3 19.3 113 102-221 146-261 (324)
432 PF02847 MA3: MA3 domain; Int 58.8 43 0.00094 21.1 7.8 62 20-83 6-69 (113)
433 PF14669 Asp_Glu_race_2: Putat 57.2 70 0.0015 23.0 14.6 178 10-187 2-206 (233)
434 PF10366 Vps39_1: Vacuolar sor 56.8 48 0.001 21.0 7.7 27 53-79 41-67 (108)
435 PF10155 DUF2363: Uncharacteri 56.1 56 0.0012 21.5 10.7 94 165-259 21-125 (126)
436 PF12926 MOZART2: Mitotic-spin 55.8 44 0.00095 20.2 7.5 42 183-224 29-70 (88)
437 KOG2062 26S proteasome regulat 55.1 1.5E+02 0.0033 26.3 10.9 180 35-226 42-239 (929)
438 KOG4814 Uncharacterized conser 54.7 1.5E+02 0.0032 25.9 8.9 91 97-189 365-455 (872)
439 PF04097 Nic96: Nup93/Nic96; 54.1 1.5E+02 0.0032 25.8 15.7 47 50-98 111-157 (613)
440 PF09868 DUF2095: Uncharacteri 53.9 57 0.0012 20.9 5.2 25 57-81 67-91 (128)
441 PF09986 DUF2225: Uncharacteri 53.8 84 0.0018 22.9 10.1 91 28-118 89-197 (214)
442 COG5187 RPN7 26S proteasome re 53.8 1E+02 0.0022 23.8 13.9 96 127-224 115-219 (412)
443 PF09868 DUF2095: Uncharacteri 53.8 57 0.0012 20.9 5.7 43 203-246 67-109 (128)
444 smart00386 HAT HAT (Half-A-TPR 53.3 21 0.00046 15.9 3.7 15 31-45 2-16 (33)
445 PLN03192 Voltage-dependent pot 53.1 1.8E+02 0.0039 26.4 10.1 140 61-221 532-676 (823)
446 COG0790 FOG: TPR repeat, SEL1 51.8 1E+02 0.0023 23.4 22.0 190 28-236 53-276 (292)
447 PF14561 TPR_20: Tetratricopep 51.8 53 0.0012 20.0 8.4 29 163-191 23-51 (90)
448 KOG1166 Mitotic checkpoint ser 51.5 1E+02 0.0023 28.3 7.8 58 176-233 92-150 (974)
449 PHA02798 ankyrin-like protein; 51.3 1.4E+02 0.0031 24.9 8.9 87 69-161 87-175 (489)
450 PRK08691 DNA polymerase III su 51.0 1.8E+02 0.0039 25.8 11.9 84 34-120 182-279 (709)
451 KOG2396 HAT (Half-A-TPR) repea 50.8 1.5E+02 0.0033 24.9 16.2 55 13-67 312-374 (568)
452 KOG3364 Membrane protein invol 50.0 77 0.0017 21.3 8.9 69 83-156 29-100 (149)
453 PRK12356 glutaminase; Reviewed 49.9 1.2E+02 0.0027 23.7 10.2 15 46-60 93-107 (319)
454 PF09477 Type_III_YscG: Bacter 48.2 71 0.0015 20.4 9.6 88 141-236 20-107 (116)
455 COG0790 FOG: TPR repeat, SEL1 47.3 1.2E+02 0.0027 23.0 19.3 118 29-158 90-222 (292)
456 PF14853 Fis1_TPR_C: Fis1 C-te 47.1 46 0.001 17.9 5.9 23 204-226 8-30 (53)
457 KOG1308 Hsp70-interacting prot 46.3 54 0.0012 25.8 4.7 90 28-120 126-216 (377)
458 PF04090 RNA_pol_I_TF: RNA pol 45.9 1.1E+02 0.0024 22.0 11.1 29 17-45 42-70 (199)
459 KOG0687 26S proteasome regulat 45.8 1.5E+02 0.0032 23.4 13.1 101 51-155 104-209 (393)
460 KOG0376 Serine-threonine phosp 45.6 79 0.0017 26.1 5.7 103 59-172 12-115 (476)
461 PRK10941 hypothetical protein; 45.3 1.4E+02 0.0029 22.8 10.4 78 166-244 185-263 (269)
462 smart00777 Mad3_BUB1_I Mad3/BU 44.7 89 0.0019 20.5 9.2 43 104-151 81-123 (125)
463 PF15297 CKAP2_C: Cytoskeleton 44.4 1.6E+02 0.0035 23.4 9.7 65 142-208 118-186 (353)
464 PRK09857 putative transposase; 44.1 1.5E+02 0.0032 22.9 9.5 67 52-119 207-273 (292)
465 cd08780 Death_TRADD Death Doma 43.3 64 0.0014 19.6 3.7 47 204-252 39-85 (90)
466 PRK09857 putative transposase; 43.1 1.5E+02 0.0033 22.8 9.2 66 165-231 209-274 (292)
467 COG4003 Uncharacterized protei 43.0 73 0.0016 19.0 5.4 24 204-227 38-61 (98)
468 PF02607 B12-binding_2: B12 bi 42.6 60 0.0013 18.8 3.8 39 173-211 12-50 (79)
469 TIGR03581 EF_0839 conserved hy 42.6 1.1E+02 0.0023 22.5 5.3 62 15-76 162-233 (236)
470 PF09986 DUF2225: Uncharacteri 42.4 1.3E+02 0.0029 21.9 12.3 96 61-157 87-195 (214)
471 cd00280 TRFH Telomeric Repeat 42.3 1.3E+02 0.0027 21.5 11.2 67 178-247 85-158 (200)
472 COG0819 TenA Putative transcri 42.0 1.4E+02 0.003 21.9 7.4 23 12-34 105-127 (218)
473 KOG1839 Uncharacterized protei 41.9 3.2E+02 0.0069 26.1 11.6 161 24-184 940-1121(1236)
474 PF12069 DUF3549: Protein of u 41.9 1.8E+02 0.0038 23.1 11.6 91 129-226 168-259 (340)
475 KOG0991 Replication factor C, 41.9 1.5E+02 0.0032 22.3 12.8 88 43-140 186-285 (333)
476 PRK14951 DNA polymerase III su 41.8 2.4E+02 0.0052 24.7 12.1 75 43-120 197-284 (618)
477 COG2405 Predicted nucleic acid 41.7 75 0.0016 21.3 4.2 43 53-96 112-154 (157)
478 COG2405 Predicted nucleic acid 40.1 83 0.0018 21.1 4.2 40 79-120 104-143 (157)
479 PRK10941 hypothetical protein; 39.9 1.7E+02 0.0036 22.3 10.3 80 127-207 181-261 (269)
480 KOG2062 26S proteasome regulat 38.4 3E+02 0.0064 24.7 10.8 27 165-191 213-239 (929)
481 KOG1166 Mitotic checkpoint ser 38.3 2.3E+02 0.0049 26.4 7.8 61 98-163 90-150 (974)
482 PF12796 Ank_2: Ankyrin repeat 37.9 86 0.0019 18.4 5.4 82 24-120 2-86 (89)
483 COG2137 OraA Uncharacterized p 37.9 1.4E+02 0.0031 21.0 11.9 11 107-117 89-99 (174)
484 KOG4521 Nuclear pore complex, 37.8 3.7E+02 0.008 25.7 14.4 131 87-222 984-1127(1480)
485 TIGR02710 CRISPR-associated pr 37.5 2.2E+02 0.0048 23.0 11.0 53 24-76 138-196 (380)
486 PF08461 HTH_12: Ribonuclease 37.5 79 0.0017 17.9 3.9 31 216-246 16-46 (66)
487 cd08318 Death_NMPP84 Death dom 37.4 80 0.0017 19.0 3.7 15 200-214 66-80 (86)
488 PF04910 Tcf25: Transcriptiona 37.4 2.2E+02 0.0047 22.9 15.6 31 48-78 37-67 (360)
489 PF09670 Cas_Cas02710: CRISPR- 36.8 2.3E+02 0.0049 22.9 12.2 52 62-114 142-197 (379)
490 KOG0376 Serine-threonine phosp 36.6 1.6E+02 0.0035 24.5 6.1 90 22-114 10-100 (476)
491 PHA02798 ankyrin-like protein; 36.0 2.6E+02 0.0056 23.4 11.3 118 72-196 52-175 (489)
492 KOG2297 Predicted translation 35.7 2.2E+02 0.0047 22.4 10.6 21 162-182 321-341 (412)
493 TIGR03362 VI_chp_7 type VI sec 35.6 1.5E+02 0.0033 23.0 5.8 58 134-191 220-279 (301)
494 PHA03100 ankyrin repeat protei 35.4 2.6E+02 0.0056 23.2 9.5 205 7-231 54-277 (480)
495 PRK10304 ferritin; Provisional 35.3 1.5E+02 0.0033 20.5 6.8 16 87-102 99-114 (165)
496 PF07378 FlbT: Flagellar prote 35.1 1.3E+02 0.0029 19.8 6.3 67 124-190 49-119 (126)
497 PF05664 DUF810: Protein of un 34.7 3.1E+02 0.0067 24.4 7.9 66 157-222 212-288 (677)
498 COG5191 Uncharacterized conser 34.5 1.8E+02 0.0039 22.9 5.7 76 14-91 105-181 (435)
499 COG5187 RPN7 26S proteasome re 34.3 2.2E+02 0.0048 22.1 14.6 102 84-191 113-221 (412)
500 PF02184 HAT: HAT (Half-A-TPR) 34.3 59 0.0013 15.4 3.2 8 181-188 6-13 (32)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-47 Score=321.56 Aligned_cols=240 Identities=18% Similarity=0.333 Sum_probs=129.1
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHH--cCCCCchhhHH
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD--RGLQSDVVTFN 90 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ 90 (259)
.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyn 583 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444444444444443 33444444455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (259)
.++.+|++.|++++|.++|++|.+.|+.| +..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p------~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKG------TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55555555555555555555444444444 235555555555555555555555555555555555555555555
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCC
Q 036731 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250 (259)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 250 (259)
+|++.|++++|.+++++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cchhhhcc
Q 036731 251 SIPQFNRQ 258 (259)
Q Consensus 251 a~~~~~~~ 258 (259)
|+++|++|
T Consensus 738 Alelf~eM 745 (1060)
T PLN03218 738 ALEVLSEM 745 (1060)
T ss_pred HHHHHHHH
Confidence 55555554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-47 Score=320.82 Aligned_cols=244 Identities=22% Similarity=0.313 Sum_probs=203.4
Q ss_pred cccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh
Q 036731 9 GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT 88 (259)
Q Consensus 9 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (259)
+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 44566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 036731 89 FNVIMDELCKNRKMDEATRLLDLMIQ--GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166 (259)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (259)
|+.++.+|++.|++++|.++|++|.. .++.| |..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P------D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDP------DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 77777777777777777777777765 34555 55889999999999999999999999998888888889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhc
Q 036731 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246 (259)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 246 (259)
.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999889999999999999999999999999999999998888999999999999999999
Q ss_pred ccCCcchhhhcc
Q 036731 247 ISLNSIPQFNRQ 258 (259)
Q Consensus 247 ~~~~a~~~~~~~ 258 (259)
++++|.++|++|
T Consensus 699 ~~eeA~~lf~eM 710 (1060)
T PLN03218 699 NWKKALELYEDI 710 (1060)
T ss_pred CHHHHHHHHHHH
Confidence 999999988876
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-44 Score=299.76 Aligned_cols=249 Identities=25% Similarity=0.367 Sum_probs=159.7
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHh----------------------------
Q 036731 2 ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT---------------------------- 53 (259)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------------------- 53 (259)
++|.++|+.+.+||..+||++|.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 175 ~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 5688899999999999999999999999999999999999977666554333
Q ss_pred -------HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc----
Q 036731 54 -------YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF---- 122 (259)
Q Consensus 54 -------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 122 (259)
|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++|.+.|+.|+..
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34444555555555555555554432 244455555555555555555555555555555444320
Q ss_pred -------------------------cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 036731 123 -------------------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177 (259)
Q Consensus 123 -------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (259)
..+|..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCC
Confidence 011335555555555555555555555555542 466666666666666666
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK-RNVMPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 178 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|.+.|++++|.++++
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 666666666666666777777777777777777777777777776654 4666666677777777777777777666665
Q ss_pred cc
Q 036731 257 RQ 258 (259)
Q Consensus 257 ~~ 258 (259)
+|
T Consensus 487 ~~ 488 (697)
T PLN03081 487 RA 488 (697)
T ss_pred HC
Confidence 54
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.2e-44 Score=297.86 Aligned_cols=243 Identities=17% Similarity=0.303 Sum_probs=227.3
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC
Q 036731 2 ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81 (259)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 81 (259)
++|.++|+.+.++|+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|
T Consensus 276 ~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 036731 82 LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161 (259)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (259)
+.||..+++.|+.+|++.|++++|.++|++|.+ | |..+|+.+|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K------NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999854 3 558999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHH
Q 036731 162 VVTYNITIHALCNDEQMDKAHDLFLDMEV-KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240 (259)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (259)
..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999986 599999999999999999999999999998876 46788888888888
Q ss_pred HHHHhcccCCcchhhhc
Q 036731 241 LLVKNEISLNSIPQFNR 257 (259)
Q Consensus 241 ~~~~~g~~~~a~~~~~~ 257 (259)
+|...|+++.|..++++
T Consensus 503 a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 503 ACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHcCCcHHHHHHHHH
Confidence 88888888777776654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-42 Score=293.71 Aligned_cols=247 Identities=23% Similarity=0.343 Sum_probs=209.3
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC
Q 036731 2 ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81 (259)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 81 (259)
++|+++|+.+.+||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|
T Consensus 340 ~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH------
Q 036731 82 LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR------ 155 (259)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------ 155 (259)
+.|+..+|+.|+.+|++.|++++|.++|++|.+. |..+|+.++.+|++.|+.++|..+|++|..
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----------d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~ 489 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----------DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----------CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999999999999999988887543 224555555555555555555555555432
Q ss_pred ----------------------------cCC------------------------------CCChhhHHHHHHHHHhcCC
Q 036731 156 ----------------------------AGL------------------------------MPNVVTYNITIHALCNDEQ 177 (259)
Q Consensus 156 ----------------------------~~~------------------------------~~~~~~~~~li~~~~~~~~ 177 (259)
.|+ .||..+|+.+|.+|++.|+
T Consensus 490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred hHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 111 3456677888888888899
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD-KRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 178 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|++|. +.|+.|+..+|+.++++|.+.|++++|.++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 67889999999999999999999999999988
Q ss_pred cc
Q 036731 257 RQ 258 (259)
Q Consensus 257 ~~ 258 (259)
+|
T Consensus 650 ~m 651 (857)
T PLN03077 650 KM 651 (857)
T ss_pred HC
Confidence 76
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-42 Score=293.35 Aligned_cols=243 Identities=18% Similarity=0.260 Sum_probs=214.7
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC
Q 036731 2 ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81 (259)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 81 (259)
++|+++|+.+.+||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 56788888888899999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 036731 82 LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161 (259)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (259)
+.||..+|+.|+.+|++.|++++|.++|++|.. | |..+|+.++.+|++.|++++|..+|++|.+.|+.||
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~------d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----K------DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----C------CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999988853 2 447899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHH
Q 036731 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241 (259)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (259)
..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ ++..+|+.++.+
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~ 464 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAG 464 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988864 456688888888
Q ss_pred HHHhcccCCcchhhhcc
Q 036731 242 LVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 242 ~~~~g~~~~a~~~~~~~ 258 (259)
|.+.|+.++|+++|++|
T Consensus 465 ~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 465 LRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 88888888888888776
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.2e-20 Score=147.00 Aligned_cols=237 Identities=15% Similarity=0.120 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc---hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN---VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (259)
+..++..+...+.+.|++++|..+++.+...+..++ ...+..+...|...|+++.|..+|+++.+.. +++..++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 445677777777777777777777777766432211 2456666777777777777777777776542 335566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (259)
++..+...|++++|.+.++.+.+.+..+.. ......+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 223 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLR--VEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDL 223 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHH
Confidence 777777777777777777777654322210 0011234455566666677777777777666543 1234455556666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCc
Q 036731 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251 (259)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 251 (259)
+...|++++|.++++++.+.+......++..+..+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHH
Confidence 6666777777777766665421112344566666666666666666666666654 24444556666666666666666
Q ss_pred chhhhc
Q 036731 252 IPQFNR 257 (259)
Q Consensus 252 ~~~~~~ 257 (259)
.++|++
T Consensus 302 ~~~l~~ 307 (389)
T PRK11788 302 QALLRE 307 (389)
T ss_pred HHHHHH
Confidence 666653
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.3e-19 Score=142.76 Aligned_cols=230 Identities=16% Similarity=0.118 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch----hhHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV----VTFNVI 92 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l 92 (259)
..+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 568888999999999999999999998753 457788999999999999999999999999886544322 245567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (259)
...+...|++++|...|+++.+.. |+ +...+..+...+.+.|++++|..+++++.+.+......++..++.+|
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~--p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAAD--PQ-----CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHC--cC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 788889999999999999998753 33 34688889999999999999999999998764333346788899999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHH---hcccC
Q 036731 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK---NEISL 249 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~ 249 (259)
...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+
T Consensus 260 ~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~ 335 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAK 335 (389)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccch
Confidence 9999999999999999887 577777788999999999999999999998876 5888888888887765 55888
Q ss_pred Ccchhhhcc
Q 036731 250 NSIPQFNRQ 258 (259)
Q Consensus 250 ~a~~~~~~~ 258 (259)
+++.+++++
T Consensus 336 ~a~~~~~~~ 344 (389)
T PRK11788 336 ESLLLLRDL 344 (389)
T ss_pred hHHHHHHHH
Confidence 898888764
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=2e-17 Score=143.08 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
..++..+...+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...|+.+...+ |+..++..+..+
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHH
Confidence 3444444444444444555544444444432 2344444555555555555555555555555442 233444555555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (259)
+...|++++|.+.++++.+.. |+ +..++..+...|...|++++|..+|+++.+.. +.+..++..+...+...
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~--~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTH--PN-----DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 666666666666666555432 22 45677777777777888888888888877764 34666777777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhh
Q 036731 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 255 (259)
|+ .+|..+++++.+.. +-+..++..+...+...|++++|.+.++++.+.+.. +..++..+..++.+.|+.++|.+++
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77 77888888777652 234556677788888999999999999999987643 8889999999999999999999999
Q ss_pred hcc
Q 036731 256 NRQ 258 (259)
Q Consensus 256 ~~~ 258 (259)
+++
T Consensus 895 ~~~ 897 (899)
T TIGR02917 895 DKL 897 (899)
T ss_pred HHH
Confidence 876
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=3.9e-17 Score=141.30 Aligned_cols=225 Identities=14% Similarity=0.140 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (259)
+..+...+.+.|++++|..+++.+.+. .+.+..+|..+..++...|++++|...++.+.+.. +.+...+..+..++..
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 333444444444444444444444332 12233444444444444444444444444444332 1123334444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036731 99 NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178 (259)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (259)
.|++++|..+++++.+.. |+ +..++..++..+...|++++|..+++.+.+.+ +.+...+..+...+...|++
T Consensus 648 ~~~~~~A~~~~~~~~~~~--~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK--PD-----NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred cCCHHHHHHHHHHHHhcC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 444444444444443321 11 22344444444444444444444444443332 12333334444444444444
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 179 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
++|...++.+... .|+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|++.|+
T Consensus 720 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 720 PAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred HHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4444444444433 2222333344444444444444444444444332 2233344444444444444444444443
No 11
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=2.2e-17 Score=124.01 Aligned_cols=244 Identities=16% Similarity=0.110 Sum_probs=114.3
Q ss_pred CCCcccccccc----cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHH
Q 036731 2 ANGNREFGVVC----KP-NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIE 76 (259)
Q Consensus 2 ~~a~~~~~~~~----~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 76 (259)
+.|.+++..+. +| |+.-|..+...+...++++.|.+.++++...+.. +...+..++.. ...+++++|.+++..
T Consensus 25 ~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~ 102 (280)
T PF13429_consen 25 EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEK 102 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccc
Confidence 45667775432 23 5556666677778899999999999999877533 56677777777 789999999999987
Q ss_pred HHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 77 MMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
..+. .++...+..++..+...++++++..+++.+......++ +...|..+...+.+.|+.++|...+++..+.
T Consensus 103 ~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 103 AYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-----SARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp -----------------H-HHHTT-HHHHHHHHHHHHH-T---T------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7665 35667788899999999999999999999875432222 6688999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHH
Q 036731 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236 (259)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (259)
... |......++..+...|+.+++..+++...+.. +.|+..+..+..++...|+.++|..++++..+.+ +.|..+..
T Consensus 176 ~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 176 DPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp -TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 422 57788889999999999999999998887763 4566678899999999999999999999988763 44788889
Q ss_pred HHHHHHHHhcccCCcchhhhc
Q 036731 237 IIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 237 ~l~~~~~~~g~~~~a~~~~~~ 257 (259)
.+.+++...|+.++|.++.++
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHT--------------
T ss_pred ccccccccccccccccccccc
Confidence 999999999999999998765
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=9.6e-15 Score=121.35 Aligned_cols=229 Identities=13% Similarity=0.042 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++......+..+
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 3344444444555555555555554443321 1111122111 2244455555555555554443222223333334455
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCChhhHHHHHHH
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN----ARELSQSLTRAGLMPNVVTYNITIHA 171 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (259)
+...|++++|...+++..... |+ +...+..+...+...|++++ |...+++..+... .+...+..+...
T Consensus 222 l~~~g~~~eA~~~~~~al~~~--p~-----~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~ 293 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARG--LD-----GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADA 293 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CC-----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 556666666666666655432 22 34666667777777777764 6777777766532 245567777777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccch-HHHHHHHHHHHHhcccCC
Q 036731 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA-SILSIIVDLLVKNEISLN 250 (259)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 250 (259)
+...|++++|...+++..... +.+...+..+...+.+.|++++|...++++.+.+ |+. ..+..+..++...|+.++
T Consensus 294 l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHH
Confidence 777777888877777777652 2234556667777777888888888887777653 332 333345566777788888
Q ss_pred cchhhhc
Q 036731 251 SIPQFNR 257 (259)
Q Consensus 251 a~~~~~~ 257 (259)
|++.|++
T Consensus 371 A~~~l~~ 377 (656)
T PRK15174 371 AESVFEH 377 (656)
T ss_pred HHHHHHH
Confidence 7777764
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.74 E-value=1e-14 Score=121.17 Aligned_cols=232 Identities=13% Similarity=0.026 Sum_probs=187.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+...|+.+...+...|++++|+..+++..+.. +-+...|..+...+...|++++|...|+...+.. +.+..+|..+..
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~ 407 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQ 407 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678888888999999999999999998762 2246688888899999999999999999998774 335788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
.+...|++++|...|++..+.. |+ +...+..+..++.+.|++++|+..|++..+.. +.+...+..+..++..
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~--P~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLD--PD-----FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC--cc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 9999999999999999998753 43 45778889999999999999999999988763 3356788899999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 175 DEQMDKAHDLFLDMEVKGVAPNC------VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
.|++++|...|++.....-..+. ..++.....+...|++++|.+++++..+.+. .+...+..+...+...|++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCH
Confidence 99999999999998876211111 1122222334457999999999999887642 3455788899999999999
Q ss_pred CCcchhhhc
Q 036731 249 LNSIPQFNR 257 (259)
Q Consensus 249 ~~a~~~~~~ 257 (259)
++|++.|++
T Consensus 559 ~eAi~~~e~ 567 (615)
T TIGR00990 559 DEALKLFER 567 (615)
T ss_pred HHHHHHHHH
Confidence 999998875
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=1.6e-14 Score=120.00 Aligned_cols=231 Identities=14% Similarity=0.062 Sum_probs=156.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ .
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~ 185 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-L 185 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-H
Confidence 44556666677777777777777777776542 334556666677777777777777777766554322 22222222 2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
.+...|++++|...++++.+....+ +......+..++...|++++|...+++...... .+...+..+...+..
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~------~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~ 258 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALE------RQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQ 258 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc------chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 3666777777777777765542211 223445556677788888888888888777642 256667777888888
Q ss_pred cCChhH----HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCC
Q 036731 175 DEQMDK----AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250 (259)
Q Consensus 175 ~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 250 (259)
.|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++
T Consensus 259 ~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 259 SGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred cCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 888875 788888887662 3356678888888888899999999888888764 2245566778888888899988
Q ss_pred cchhhhc
Q 036731 251 SIPQFNR 257 (259)
Q Consensus 251 a~~~~~~ 257 (259)
|+..|++
T Consensus 337 A~~~l~~ 343 (656)
T PRK15174 337 ASDEFVQ 343 (656)
T ss_pred HHHHHHH
Confidence 8887765
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.4e-14 Score=108.69 Aligned_cols=236 Identities=15% Similarity=0.233 Sum_probs=177.8
Q ss_pred ccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHH
Q 036731 12 CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91 (259)
Q Consensus 12 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (259)
.+.+..+|..+|.+.++....++|.+++++......+.+..+||.+|.+..-.. ..+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 455788999999999999999999999999998888999999999997654332 2788999999999999999999
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc----CCCC--
Q 036731 92 IMDELCKNRKMDE----ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN-ARELSQSLTRA----GLMP-- 160 (259)
Q Consensus 92 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~-- 160 (259)
++.+..+.|+++. |.+++.+|++.|+.|.. .+|..+|..+++.++..+ +..++.++... .++|
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsL------sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSL------SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcch------hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999998765 56788889999998854 899999999999888754 44444444432 2222
Q ss_pred --ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccc
Q 036731 161 --NVVTYNITIHALCNDEQMDKAHDLFLDMEVK----GVAPNC---VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231 (259)
Q Consensus 161 --~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (259)
|...|...+..|.+..+.+.|.++-.-+... -+.|+. .-|..+....++....+.....+..|.-.-.-|.
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 3445667777888888888887776555432 133332 2355666677777777888888888876666677
Q ss_pred hHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 232 ASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 232 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
..+...++++....|.++-.-+++..
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D 458 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKD 458 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHH
Confidence 77888888877777777655555543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.68 E-value=1.9e-13 Score=113.67 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (259)
.+..+...+...|++++|+..+++..+. .|+ ....|..+..++...|++++|...|++..+... .+..+|..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~ 404 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPR-----VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYH 404 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 3444455555666666666666666553 222 335666777777777777777777777766532 24566777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcc
Q 036731 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247 (259)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 247 (259)
+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccC
Confidence 7777777777777777777777652 2345566667777777788888888887776542 2345677777777888888
Q ss_pred cCCcchhhhc
Q 036731 248 SLNSIPQFNR 257 (259)
Q Consensus 248 ~~~a~~~~~~ 257 (259)
+++|++.|++
T Consensus 483 ~~~A~~~~~~ 492 (615)
T TIGR00990 483 FDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=4.7e-13 Score=97.77 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3445555666666666666666666665442 22345555556666666666666666666655432 234455555666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (259)
+...|++++|.+.+++.......+. ....+..+..++...|++++|...+++..+... .+...+..+...+...
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLR 182 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHc
Confidence 6666666666666666654321111 224455555666666666666666666555421 1334555555666666
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 183 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 183 GQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666665554 23344445555555556666666666555544
No 18
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1.1e-13 Score=108.70 Aligned_cols=225 Identities=8% Similarity=0.032 Sum_probs=175.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCchHhHH--HHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNVVTYN--SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (259)
..+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++.+.+... -+......+...|.+.|
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHH
Confidence 44558899999999999999865 55554333 335678889999999999999988753 36778888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCc-----------------------------------cchhHHHHHHHHHHHHhcCChHH
Q 036731 101 KMDEATRLLDLMIQGGVRPDAF-----------------------------------CEINIVAYGCLIDGLCKIGKLKN 145 (259)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~~~~~~~~~ 145 (259)
++++|.+++..+.+.+..++.. .+.++.....+...+...|+.++
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999998888655432110 11244566677888889999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
|..++++..+. .|+... .++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|+...+
T Consensus 282 A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 282 AQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred HHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999988874 344422 23344445689999999999988762 33556688889999999999999999999997
Q ss_pred CCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 226 RNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
. .|+...+..+..++.+.|+.++|..+|++
T Consensus 357 ~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 357 Q--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred c--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 68889999999999999999999988874
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=3.9e-13 Score=115.01 Aligned_cols=227 Identities=10% Similarity=-0.011 Sum_probs=178.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56778888877776 7888899988887765 456544444455557899999999999987654 444555667788
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
++.+.|+.++|...+++..+.. |+ +...+..+.....+.|++++|...+++..+. .|+...+..+..++.+
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~--P~-----~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG--LG-----DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--Cc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 8899999999999999988754 33 2234444444555669999999999999876 4567788889999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
.|++++|...+++..... +-+...+..+..++...|++++|...+++..+.. +-+...+..+..++...|++++|+..
T Consensus 622 lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 622 RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998873 3456778888888999999999999999988764 33677888899999999999999988
Q ss_pred hhc
Q 036731 255 FNR 257 (259)
Q Consensus 255 ~~~ 257 (259)
|++
T Consensus 700 l~~ 702 (987)
T PRK09782 700 ARL 702 (987)
T ss_pred HHH
Confidence 875
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=9.6e-16 Score=115.18 Aligned_cols=224 Identities=12% Similarity=0.054 Sum_probs=98.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCC-CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (259)
.+...+.+.|++++|+++++....... +.+...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 457888899999999999976654432 335556666777778899999999999999987544 56677777777 789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCh
Q 036731 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCNDEQM 178 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~ 178 (259)
+++++|.+++....+... +...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~--------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDG--------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cccccccccccccccccc--------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 999999999887655432 33678888999999999999999999987543 345777888899999999999
Q ss_pred hHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 179 DKAHDLFLDMEVKGVAP-NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 179 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
++|...+++..+. .| |......++..+...|+.+++.++++...+.. +.+...+..+..+|...|+.++|+..|++
T Consensus 163 ~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 163 DKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 9999999999987 45 57788899999999999999999999887664 45667888999999999999999999876
No 21
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.4e-12 Score=103.06 Aligned_cols=232 Identities=10% Similarity=0.014 Sum_probs=171.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchH--hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVV--TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
+-....++.+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|...++.+.+.... +......+...+
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~ 197 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAY 197 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 334456677889999999999888765 24432 3333467778889999999999998887533 566778888889
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCc------------------------------cc-----hhHHHHHHHHHHHHhcC
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAF------------------------------CE-----INIVAYGCLIDGLCKIG 141 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------------~~-----~~~~~~~~l~~~~~~~~ 141 (259)
...|+++.|.+.+..+.+.+..+... .. .+...+..+...+...|
T Consensus 198 ~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 198 IRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 99999998888888888765432211 11 26678888888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-H--HHHHHHHHHHHhcCCHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVT---YNITIHALCNDEQMDKAHDLFLDMEVKGVAPN-C--VIFTTLMPSFIRKNETSK 215 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~~~~~~ 215 (259)
+.++|.+++++..+.. ||... ...........++.+.+.+.++...+. .|+ + ....++...+.+.|++++
T Consensus 278 ~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred ChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHH
Confidence 9999999999998863 34332 111222223457778888888887765 343 3 556688899999999999
Q ss_pred HHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 216 VIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
|.+.|+........|+...+..+...+.+.|+.++|.++|++
T Consensus 354 A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 354 AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999644434478888899999999999999999998875
No 22
>PF13041 PPR_2: PPR repeat family
Probab=99.62 E-value=1.7e-15 Score=82.14 Aligned_cols=50 Identities=50% Similarity=0.923 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhh
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 63 (259)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888764
No 23
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=7.3e-13 Score=96.07 Aligned_cols=220 Identities=14% Similarity=0.132 Sum_probs=168.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHHcCCHHHH
Q 036731 29 EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD---VVTFNVIMDELCKNRKMDEA 105 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 105 (259)
+.+.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..+.|+++.+.+.++.--+. ....-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567899999999998752 33556667888899999999999999998887621111 12334566778889999999
Q ss_pred HHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHH
Q 036731 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV----VTYNITIHALCNDEQMDKA 181 (259)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a 181 (259)
+.+|..+.+.+... ......|+..|....+|++|.++-+++.+.+..+.. ..|..+...+....+.+.|
T Consensus 127 E~~f~~L~de~efa-------~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 127 EDIFNQLVDEGEFA-------EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred HHHHHHHhcchhhh-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999988755443 368889999999999999999999999887654432 2456666666777888999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 182 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
..++.+..+.+ +-.+..--.+.+.+...|+++.|.+.++...+.+..--+.+...+..+|...|+.++.+..+.+
T Consensus 200 ~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 200 RELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999888763 2223333455678888999999999999999888777788889999999999998887766543
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.60 E-value=2.2e-12 Score=94.23 Aligned_cols=199 Identities=11% Similarity=0.019 Sum_probs=163.9
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHH
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. |. +..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~-----~~~ 100 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PN-----NGD 100 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-----CHH
Confidence 345678888899999999999999999998764 3356778889999999999999999999988754 22 347
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
.+..+...+...|++++|...+++....... .....+..+...+...|++++|...+.+..... +.+...+..+...+
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 179 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHH
Confidence 8888999999999999999999999875322 234567778888999999999999999988763 33566788889999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.
T Consensus 180 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999998876 344667777888889999999999887654
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.58 E-value=4.7e-13 Score=105.09 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc-hhhHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD-VVTFNVIMD 94 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 94 (259)
..|-.|...|...+.+++|...|.+.... .| ....|..+...|..+|.++-|+..|++..+. .|+ ...|+.|..
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLAN 328 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHH
Confidence 45666666677777777777777666543 33 3455666666677777777777777777665 343 556778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHH
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP-NVVTYNITIHALC 173 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 173 (259)
++-..|+..+|.+.+.+..... |+ .....+.|..+|...|.+++|..+|....+- .| -...++.|...|-
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~--p~-----hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLC--PN-----HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYK 399 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhC--Cc-----cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHH
Confidence 8888888888888887776542 32 3467777888888888888888888777664 22 2446777888888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcc
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNC-VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 252 (259)
.+|++++|...+++.... .|+. ..|+.+...|-..|+.+.|.+.+.+.+..+. .-.+.++-|...|..+|+..+|+
T Consensus 400 qqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred hcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHH
Confidence 888888888888887754 5654 5688888888888888888888888776542 24567777888888888888888
Q ss_pred hhhhc
Q 036731 253 PQFNR 257 (259)
Q Consensus 253 ~~~~~ 257 (259)
..|++
T Consensus 477 ~sY~~ 481 (966)
T KOG4626|consen 477 QSYRT 481 (966)
T ss_pred HHHHH
Confidence 77753
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.58 E-value=6.1e-12 Score=107.86 Aligned_cols=229 Identities=9% Similarity=-0.041 Sum_probs=176.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
|+......+...+.+.|++++|...|+++... +|+...+..+...+.+.|++++|...++...+.. +.+...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 55433333445556899999999999998654 4555667777888899999999999999998774 22333333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
......|++++|...+++..+.. | +...+..+..++.+.|++++|...+++...... .+...+..+..++.
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~--P------~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~ 654 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIA--P------SANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALW 654 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--C------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 45556699999999999998753 3 237899999999999999999999999998753 25667788888999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcch
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 253 (259)
..|++++|...+++..+.. +-+...+..+..++...|++++|...+++..+... -+..+.........+..+++.|.+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P-~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID-NQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCchhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999998863 34667888999999999999999999999987642 233455556666666666666666
Q ss_pred hhh
Q 036731 254 QFN 256 (259)
Q Consensus 254 ~~~ 256 (259)
.++
T Consensus 733 ~~~ 735 (987)
T PRK09782 733 EVG 735 (987)
T ss_pred HHH
Confidence 544
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.57 E-value=3.1e-12 Score=113.23 Aligned_cols=230 Identities=13% Similarity=0.042 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (259)
+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+.... +...+..+...+..
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~ 541 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHh
Confidence 4456677788899999999999988763 335667778888899999999999999988765322 33333333333344
Q ss_pred cCCHHHHHHHHHHHHhCC--------------------------------------CCCCCccchhHHHHHHHHHHHHhc
Q 036731 99 NRKMDEATRLLDLMIQGG--------------------------------------VRPDAFCEINIVAYGCLIDGLCKI 140 (259)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~ 140 (259)
.++.++|...++.+.... ..|+ +...+..+...+.+.
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~-----~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP-----STRIDLTLADWAQQR 616 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC-----CchHHHHHHHHHHHc
Confidence 445455444443321100 1222 346677888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 036731 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
|++++|...|++..+... .+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|.+++
T Consensus 617 g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999988743 367788889999999999999999999887652 234556677788888999999999999
Q ss_pred HHHhhCCC--cc---chHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 221 RSMDKRNV--MP---YASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 221 ~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+++..... .| +...+..+...+...|+.++|+..|++
T Consensus 695 ~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 695 NRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99876532 22 234666778889999999999998875
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.57 E-value=6.9e-12 Score=111.06 Aligned_cols=233 Identities=12% Similarity=-0.012 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHH-------------------------------------
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSL------------------------------------- 57 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------- 57 (259)
+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 56677788889999999999999999988652 2223333222
Q ss_pred -----HHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHH
Q 036731 58 -----IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132 (259)
Q Consensus 58 -----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (259)
...+...|++++|++.+++..+.... +...+..+...|.+.|++++|...++++.+.. |+ +...+..
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~-----~~~~~~a 534 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PN-----DPEQVYA 534 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-----CHHHHHH
Confidence 23344578888888888888876432 56677778888999999999999998887642 33 1222322
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc---------------------------------------CCCCChhhHHHHHHHHH
Q 036731 133 LIDGLCKIGKLKNARELSQSLTRA---------------------------------------GLMPNVVTYNITIHALC 173 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~li~~~~ 173 (259)
+...+...++.++|...++.+... ..+.+...+..+...+.
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQ 614 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 223333344444444333322100 11334556667778888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcch
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 253 (259)
..|++++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..+...+..++...|++++|.+
T Consensus 615 ~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHH
Confidence 8899999999999888763 3457788888889999999999999999877653 2345566777888888999999988
Q ss_pred hhhcc
Q 036731 254 QFNRQ 258 (259)
Q Consensus 254 ~~~~~ 258 (259)
+|+++
T Consensus 693 ~~~~a 697 (1157)
T PRK11447 693 TFNRL 697 (1157)
T ss_pred HHHHH
Confidence 88764
No 29
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.3e-12 Score=93.57 Aligned_cols=220 Identities=14% Similarity=0.118 Sum_probs=143.1
Q ss_pred CCCcccccccccCCHHHH---HHHHHHHHhcCChHHHHHHHHHHhhCC-CCCc--hHhHHHHHHHHhhcCChhHHHHHHH
Q 036731 2 ANGNREFGVVCKPNTVTY---NTIIDGLCKEGFVDKAKELFLQMKDEN-INPN--VVTYNSLIHGFCYANDGNEAEYLFI 75 (259)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~ 75 (259)
|.|.+.|-...+-|+.|| -+|.+.|.+.|.+++|+++.+.+.++. .+.+ ......|..-|...|-+|.|..+|.
T Consensus 52 dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~ 131 (389)
T COG2956 52 DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN 131 (389)
T ss_pred chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 345666666666665555 467788999999999999999998761 1111 2234556677888999999999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 76 EMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
.+.+.+. .-....-.|+..|-...+|++|+++-+++.+.+..+... .=...|.-+...+....+.+.|...+++..+
T Consensus 132 ~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 132 QLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--EIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 9987642 245567778899999999999999988888766554321 1123444555555556666666666666655
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 156 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
.+.+ .+..-..+.+.....|+++.|.+.|+...+.+...-..+...|..+|.+.|+.++....+.++.+
T Consensus 209 a~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 209 ADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4322 23333344455666666666666666666664433445566666666666666666666555543
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=6.3e-12 Score=94.77 Aligned_cols=229 Identities=14% Similarity=0.215 Sum_probs=181.3
Q ss_pred ccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhH----HHHHHHHHHHcCCCCchh
Q 036731 12 CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE----AEYLFIEMMDRGLQSDVV 87 (259)
Q Consensus 12 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~ 87 (259)
.+.+..+||.+|.+-.-... .+++.+|....+.||..|+|.++.+..+.|+++. |++++.+|++.|+.|...
T Consensus 238 ~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLs 313 (625)
T KOG4422|consen 238 GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLS 313 (625)
T ss_pred heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchh
Confidence 45688899999987654333 7899999999999999999999999999998775 677888999999999999
Q ss_pred hHHHHHHHHHHcCCHHH-HHHHHHHHH----hCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----C
Q 036731 88 TFNVIMDELCKNRKMDE-ATRLLDLMI----QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG----L 158 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~-a~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~ 158 (259)
+|..++..+.+.++..+ +..++.++. ...++|. .+.|...|...+..|.+..+.+.|.++..-+.... +
T Consensus 314 Syh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~--~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 314 SYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI--TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC--CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 99999999999888754 444444443 2223332 13366788899999999999999999887665321 2
Q ss_pred CCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHH
Q 036731 159 MPN---VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235 (259)
Q Consensus 159 ~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (259)
.|+ ..-|..+....+.....+....+|+.|+-.-+-|+..+...++++....|.++-.-+++..+...|.......-
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 333 23466777888888999999999999998888899999999999999999999999999999988877666666
Q ss_pred HHHHHHHHHhc
Q 036731 236 SIIVDLLVKNE 246 (259)
Q Consensus 236 ~~l~~~~~~~g 246 (259)
.-++..+++..
T Consensus 472 eeil~~L~~~k 482 (625)
T KOG4422|consen 472 EEILMLLARDK 482 (625)
T ss_pred HHHHHHHhcCC
Confidence 66666555544
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.1e-12 Score=103.41 Aligned_cols=228 Identities=13% Similarity=0.057 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCC---------------------------------CCCchHhHHHHHHHHhh
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDEN---------------------------------INPNVVTYNSLIHGFCY 63 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~li~~~~~ 63 (259)
.+...+..+|...+++++|.++|+.+++.. -+-.+.+|..+.++|.-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 345567788999999999999998876430 11245667777788888
Q ss_pred cCChhHHHHHHHHHHHcCCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC
Q 036731 64 ANDGNEAEYLFIEMMDRGLQS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142 (259)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (259)
+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..... .|. +-.+|.-+...|.+.++
T Consensus 434 Qkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~r-----hYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPR-----HYNAWYGLGTVYLKQEK 504 (638)
T ss_pred hhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cch-----hhHHHHhhhhheeccch
Confidence 88888888888888875 34 5678888888888888888888888877654 232 34677778888999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036731 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222 (259)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (259)
++.|+-.|+...+.+.. +.+....+...+.+.|+.++|++++++....+ +.|+..--.-...+...+++++|...+++
T Consensus 505 ~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999999887543 66677778888899999999999999988764 23444444456667778999999999999
Q ss_pred HhhCCCccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 223 MDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
+.+. ++-....+..+...|.+.|+.+.|+.-|.
T Consensus 583 Lk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 583 LKEL-VPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHh-CcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 9876 23356677888899999999998887653
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5e-12 Score=95.98 Aligned_cols=222 Identities=9% Similarity=-0.004 Sum_probs=164.9
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCC-----------------------
Q 036731 26 LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL----------------------- 82 (259)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 82 (259)
+....+.+++.+=.......|++-+...-+....+.....|+++|+.+|+++.+..+
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 333344555555555555555554444444444455556666666666666665421
Q ss_pred ----------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036731 83 ----------QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152 (259)
Q Consensus 83 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (259)
+-.+.|+.++.+-|+-.++.++|...|++..+.+.. ...+|+.+..-|....+...|..-++.
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-------~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-------YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-------hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 112345666666677778889999999998886544 457899999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccch
Q 036731 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232 (259)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 232 (259)
..+-+. .|-..|-.|.++|...+...-|+-.|++..... +-|...|.+|..+|.+.++.++|.+.|.+....|- .+.
T Consensus 390 Avdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~ 466 (559)
T KOG1155|consen 390 AVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEG 466 (559)
T ss_pred HHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cch
Confidence 888753 378889999999999999999999999988762 44778899999999999999999999999887763 366
Q ss_pred HHHHHHHHHHHHhcccCCcchhhhc
Q 036731 233 SILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 233 ~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
..+..+.+.|.+.++.++|...|.+
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7888899999999999998887764
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=2.9e-11 Score=99.20 Aligned_cols=228 Identities=11% Similarity=0.045 Sum_probs=162.5
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCC-chHhHHHHHHHHh---------hcCChhHHHHHHHHHH
Q 036731 14 PNTVTYNTIIDGLCK-----EGFVDKAKELFLQMKDENINP-NVVTYNSLIHGFC---------YANDGNEAEYLFIEMM 78 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~ 78 (259)
.+...|...+.+-.. .+++++|..+|++..+. .| +...|..+..++. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 456667677666422 23467899999998876 34 3455555554443 2345789999999998
Q ss_pred HcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 036731 79 DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158 (259)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (259)
+.... +...+..+...+...|++++|...|++..+.+ |+ +...+..+..++...|++++|...+++..+...
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~-----~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PI-----SADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 87433 67788888888999999999999999998764 44 457888899999999999999999999988743
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHH
Q 036731 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP-NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237 (259)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (259)
. +...+..++..+...|++++|...+++..... .| +...+..+..++...|++++|...+.++.... +.+......
T Consensus 404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~ 480 (553)
T PRK12370 404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNL 480 (553)
T ss_pred C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHH
Confidence 3 22233344555667899999999999987653 24 44556777888889999999999998876552 223334455
Q ss_pred HHHHHHHhcccCCcchhhh
Q 036731 238 IVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 238 l~~~~~~~g~~~~a~~~~~ 256 (259)
+...|...|+ +|...++
T Consensus 481 l~~~~~~~g~--~a~~~l~ 497 (553)
T PRK12370 481 LYAEYCQNSE--RALPTIR 497 (553)
T ss_pred HHHHHhccHH--HHHHHHH
Confidence 5556666664 5555444
No 34
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=2.9e-14 Score=77.22 Aligned_cols=50 Identities=50% Similarity=0.903 Sum_probs=48.5
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (259)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=4.2e-13 Score=108.90 Aligned_cols=225 Identities=18% Similarity=0.202 Sum_probs=163.9
Q ss_pred cccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh
Q 036731 9 GVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT 88 (259)
Q Consensus 9 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (259)
..|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+...+++.+.+. .|...|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4689999999999999999999999998 9999988878888889999999988888888776 678889
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHH----HhCCCCCCCc-----------cch----------hHHHHHHHHHHHHhc
Q 036731 89 FNVIMDELCKNRKMDE---ATRLLDLM----IQGGVRPDAF-----------CEI----------NIVAYGCLIDGLCKI 140 (259)
Q Consensus 89 ~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~-----------~~~----------~~~~~~~l~~~~~~~ 140 (259)
|..|..+|...||+.. ..+-+..+ ...|+..... ..| ....|..++......
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999998654 22212222 1222211100 011 111222222222110
Q ss_pred ------C-----------ChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 036731 141 ------G-----------KLKNARELSQSLTRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202 (259)
Q Consensus 141 ------~-----------~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 202 (259)
+ .+.-..++.... +... .|++.+|..++.+-...|+.+.|..++.+|++.|++.+.+.|..
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~c-ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMC-KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHH-HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 0 011111111111 2222 48999999999999999999999999999999999999999888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccC
Q 036731 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249 (259)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 249 (259)
|+-+ .+...-+..+++-|.+.|+.|++.|+...+..+.++|...
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 8876 7888889999999999999999999999888888766643
No 36
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.53 E-value=1.1e-12 Score=103.17 Aligned_cols=226 Identities=14% Similarity=0.129 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc-hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN-VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
.+|+.|...+-..|+...|++-|++..+. .|+ ...|-.|...|...+.+++|...|.+..... +.....+..+.-.
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~i 295 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACI 295 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEE
Confidence 45777777777788888888888887754 343 5677778888888888888888888777652 2245667777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (259)
|...|+++-|+..+++..+. .|. -...|+.|..++-..|++.+|.+.|.+...... ......+.|..++...
T Consensus 296 YyeqG~ldlAI~~Ykral~~--~P~-----F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALEL--QPN-----FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQ 367 (966)
T ss_pred EeccccHHHHHHHHHHHHhc--CCC-----chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHh
Confidence 88888888888888888764 333 347899999999999999999999988887642 2455778888899999
Q ss_pred CChhHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc-chHHHHHHHHHHHHhcccCCcch
Q 036731 176 EQMDKAHDLFLDMEVKGVAPN-CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNEISLNSIP 253 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 253 (259)
|.++.|..+|....+- .|. ...++.|...|-+.|++++|...+++.+.. .| -...++-+...|...|+.+.|+.
T Consensus 368 ~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred ccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHH
Confidence 9999999999888765 444 356888888899999999999999988864 44 35678888888999999988888
Q ss_pred hhhc
Q 036731 254 QFNR 257 (259)
Q Consensus 254 ~~~~ 257 (259)
.|.+
T Consensus 444 ~y~r 447 (966)
T KOG4626|consen 444 CYTR 447 (966)
T ss_pred HHHH
Confidence 7754
No 37
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.1e-12 Score=94.12 Aligned_cols=226 Identities=13% Similarity=0.076 Sum_probs=180.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 036731 20 NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99 (259)
Q Consensus 20 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (259)
+.+..+|.+.|.+.+|.+-++...++ .|-+.||-.|-+.|.+-.+++.|+.++.+-.+. ++-+.....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45778888999999999999888776 567888888999999999999999999888776 333444445567788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 036731 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (259)
++.++|.++++...+.. |. ++....++...|.-.++++.|+.+|+++...|+. +...|+.+.-+|.-.++++
T Consensus 304 ~~~~~a~~lYk~vlk~~--~~-----nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--PI-----NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HhHHHHHHHHHHHHhcC--Cc-----cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 89999999998887653 22 5577777888888889999999999999998876 7888888888888899999
Q ss_pred HHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 180 KAHDLFLDMEVKGVAPN--CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 180 ~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
-++.-|.+....--.|+ ..+|-.+....+..|++..|.+.|+-.+..+ .-..+.++.+.-.-.+.|+.++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99988888876543344 3567777777888899999999998877654 33667888888888899999988887764
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=1.6e-10 Score=86.33 Aligned_cols=233 Identities=11% Similarity=0.032 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
..|..-..+.-+.|+.+.+-.++.+.-+.--.++....-+..+.....|+++.|..-.+++.+.+.. ++.......++|
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y 197 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHH
Confidence 3455555666777888888888877766533445555556666777778888888888877776533 566777788888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCc-----------------------------------cchhHHHHHHHHHHHHhcC
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAF-----------------------------------CEINIVAYGCLIDGLCKIG 141 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~~~~~ 141 (259)
.+.|++.....++..+.+.+.-.+.. ...++..-.+++.-+.+.|
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~ 277 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG 277 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC
Confidence 88888888888888887776554432 2234456666677777777
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (259)
+.++|.++.++..+.+..|+ -...-.+.+-++.+.-++..+..... .+-++..+..|...|.+.+.|.+|.+.|+
T Consensus 278 ~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 278 DHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred ChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777777655544 11222344556666666665554443 23345788899999999999999999999
Q ss_pred HHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 222 SMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
...+. .|+..+|..+.+++.+.|+..+|..++++
T Consensus 353 aAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 353 AALKL--RPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 88766 78999999999999999999988877653
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.3e-11 Score=90.56 Aligned_cols=234 Identities=8% Similarity=0.028 Sum_probs=181.5
Q ss_pred cccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-C-CchHhHHHHH------------------------------
Q 036731 11 VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-N-PNVVTYNSLI------------------------------ 58 (259)
Q Consensus 11 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~li------------------------------ 58 (259)
|..-+...-+....+.-...+++.|+.+|+++.++.. . -|..+|..++
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 3333333333344445567899999999999987621 1 1455554443
Q ss_pred -HHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHH
Q 036731 59 -HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137 (259)
Q Consensus 59 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (259)
+.|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+-+++..+.. |. |-..|-.+.++|
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~-----DyRAWYGLGQaY 408 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PR-----DYRAWYGLGQAY 408 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--ch-----hHHHHhhhhHHH
Confidence 4456667899999999999987533 56789999999999999999999999998753 33 779999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 036731 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217 (259)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 217 (259)
.-.+.+.-|+-.|++..... +-|...|.+|..+|.+.++.++|...|......| ..+...+..|.+.+-+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999998864 3488999999999999999999999999998876 336688999999999999999999
Q ss_pred HHHHHHhh----CCC-cc-chHHHHHHHHHHHHhcccCCcchh
Q 036731 218 ELLRSMDK----RNV-MP-YASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 218 ~~~~~~~~----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
..+..-++ .|. .| .......|...+.+.+++++|..+
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 99887654 232 22 233344466777888888887654
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.48 E-value=1.7e-10 Score=98.13 Aligned_cols=234 Identities=10% Similarity=0.041 Sum_probs=165.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+...+...|++++|+..++++.+.. +.+.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 355568889999999999999999999988762 4456677788888999999999999999998773 33455 88888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHH------------------------
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL------------------------ 149 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------------------ 149 (259)
.++...|+.++|+..++++.+. .|+ +...+..+..++...+..+.|+..
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~--~P~-----~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r 196 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPR--APQ-----TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVR 196 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999875 343 335555566666666665544433
Q ss_pred ----------------------HHHHHHc-CCCCChh-hHH----HHHHHHHhcCChhHHHHHHHHHHhcCCC-CcHHHH
Q 036731 150 ----------------------SQSLTRA-GLMPNVV-TYN----ITIHALCNDEQMDKAHDLFLDMEVKGVA-PNCVIF 200 (259)
Q Consensus 150 ----------------------~~~~~~~-~~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~ 200 (259)
++.+.+. ...|+.. .+. ..+.++...|++++|...|+.+.+.+-. |+. ..
T Consensus 197 ~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~ 275 (765)
T PRK10049 197 LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQ 275 (765)
T ss_pred hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HH
Confidence 3343322 1112211 111 1133456778999999999999877522 322 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCcc---chHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 201 TTLMPSFIRKNETSKVIELLRSMDKRNVMP---YASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
..+..++...|++++|...++++.+..... .......+..++...|++++|+..++++
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 235678889999999999999987643211 1345666777889999999999887754
No 41
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.47 E-value=4.9e-11 Score=94.41 Aligned_cols=240 Identities=13% Similarity=0.025 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CC-CCchH-hHHHHHHHHhhcCChhHHHHHHHHHHHc-----CC--
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDE-----NI-NPNVV-TYNSLIHGFCYANDGNEAEYLFIEMMDR-----GL-- 82 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-- 82 (259)
.+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++... |-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555899999999999999999988654 21 22332 3344667889999999999999998742 21
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC
Q 036731 83 QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVR-PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA---GL 158 (259)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 158 (259)
+.-..+++.|..+|.+.|++++|...+++..+.--. +......-...++.+...|+..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112456788888999999999988888765421111 00000112356777888899999999999999876542 11
Q ss_pred CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CC--CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--
Q 036731 159 MPN----VVTYNITIHALCNDEQMDKAHDLFLDMEVK----GV--AP-NCVIFTTLMPSFIRKNETSKVIELLRSMDK-- 225 (259)
Q Consensus 159 ~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 225 (259)
.++ ..+++.+...|...|++++|.+++++.... +. .+ ....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357899999999999999999999988654 11 22 245678888999999999999999987543
Q ss_pred --CCC--ccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 226 --RNV--MPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 226 --~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.|. +....+|.-|...|...|++++|+++.+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 222 2345678899999999999999998754
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.45 E-value=1.7e-10 Score=98.23 Aligned_cols=249 Identities=14% Similarity=0.026 Sum_probs=171.6
Q ss_pred Cccccccc---ccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 4 GNREFGVV---CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 4 a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
|.+.++.. -+.+...+..+...+...|++++|...++++.+. .+.+.. +..+..++...|+.++|+..++++.+.
T Consensus 68 A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 68 SLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44445543 2335677888889999999999999999999876 244555 888888999999999999999999987
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHH----------------------------------------------HHHh
Q 036731 81 GLQSDVVTFNVIMDELCKNRKMDEATRLLD----------------------------------------------LMIQ 114 (259)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------------------~~~~ 114 (259)
... +...+..+..++...+..+.|+..++ .+.+
T Consensus 146 ~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 146 APQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 433 45555566667766666665554444 3332
Q ss_pred C-CCCCCCccchh-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 115 G-GVRPDAFCEIN-IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 115 ~-~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
. ...|+. .+. .......+..+...|++++|+..|+.+.+.+.. |+. .-..+..++...|++++|...|+++.+.
T Consensus 225 ~~~~~p~~--~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 225 LWHDNPDA--TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred hcccCCcc--chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 1 111111 000 111111134456779999999999999887532 322 2223567899999999999999998765
Q ss_pred CCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----------ccc---hHHHHHHHHHHHHhcccCCcchh
Q 036731 192 GVAP---NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV-----------MPY---ASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 192 ~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
.-.. .......+..++...|++++|.++++.+.+... .|+ ...+..+...+...|+.++|++.
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2111 134566677788999999999999999886531 122 23456777889999999999998
Q ss_pred hhcc
Q 036731 255 FNRQ 258 (259)
Q Consensus 255 ~~~~ 258 (259)
++++
T Consensus 382 l~~a 385 (765)
T PRK10049 382 AREL 385 (765)
T ss_pred HHHH
Confidence 8763
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=1.3e-10 Score=95.31 Aligned_cols=209 Identities=12% Similarity=0.074 Sum_probs=152.2
Q ss_pred Cccccccccc--C-CHHHHHHHHHHHH---------hcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHH
Q 036731 4 GNREFGVVCK--P-NTVTYNTIIDGLC---------KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71 (259)
Q Consensus 4 a~~~~~~~~~--~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 71 (259)
|...|+..++ | +...|..+..++. ..+++++|...+++..+.. +-+...+..+...+...|++++|.
T Consensus 280 A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~ 358 (553)
T PRK12370 280 ALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGS 358 (553)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHH
Confidence 4445555443 3 3455655555443 2345889999999998774 446778888888899999999999
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHH
Q 036731 72 YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151 (259)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (259)
..+++..+.+ +.+...+..+..++...|++++|...+++..+.+ |. +...+..++..+...|++++|...++
T Consensus 359 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~-----~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 359 LLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PT-----RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC-----ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999875 3356678889999999999999999999998764 33 22344445556777899999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 152 SLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC-VIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 152 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
+......+-+...+..+..++...|+.++|...++++... .|+. ...+.+...+...| +.|...++.+.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9876532223445677788888999999999999998765 4443 33445555666666 477777777664
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.45 E-value=8.6e-11 Score=99.05 Aligned_cols=251 Identities=10% Similarity=0.010 Sum_probs=158.4
Q ss_pred CCcccccccccCCHH-HHHHH--HHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 036731 3 NGNREFGVVCKPNTV-TYNTI--IDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 3 ~a~~~~~~~~~~~~~-~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 79 (259)
.|...+++-+.|+.. .+..+ ...+...|++++|.++|+++.+.. +-+...+..++..+...++.++|++.++++..
T Consensus 86 ~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 86 EVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence 344455555555332 23333 457778899999999999998763 33566677778888888999999999888877
Q ss_pred cCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-------------------------------------
Q 036731 80 RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF------------------------------------- 122 (259)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------------------- 122 (259)
. .|+...+..++..+...++..+|++.++++.+.. |+..
T Consensus 165 ~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 165 R--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred c--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 6 4455555444444444566656888888887653 3322
Q ss_pred ------------------------------------------cchh-----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 123 ------------------------------------------CEIN-----IVAYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 123 ------------------------------------------~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
..|. .....-.+-++...|+..++++.|+.+..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 0010 11222334455666777777777777777
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--
Q 036731 156 AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG-----VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV-- 228 (259)
Q Consensus 156 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 228 (259)
.+.+....+-..+..+|...+++++|+.+++.+.... ..++......|.-++...+++++|..+++.+.+...
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 6655445566777777777788888888887775542 122333346677777777888888888877765311
Q ss_pred ---------ccc---hHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 229 ---------MPY---ASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 229 ---------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
.|+ ...+..++..+.-.|+..+|.+.++++
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 223344566677777777777776653
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.44 E-value=1.3e-09 Score=75.98 Aligned_cols=208 Identities=10% Similarity=0.033 Sum_probs=167.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (259)
+...|.-.|.+.|++..|..-+++.++.. +-+..+|..+...|-+.|+.+.|.+-|+........ +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 45667788999999999999999998873 445678888889999999999999999998877433 6677888888899
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (259)
..|++++|...|++....-.-+. ...+|..+.-+..+.|+.+.|...|++..+.... ...+...+.......|+
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~-----~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGE-----PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGD 188 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCC-----cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhccc
Confidence 99999999999998886544443 2478999999999999999999999998887533 45567778888889999
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHH
Q 036731 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236 (259)
Q Consensus 178 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (259)
+-.|...++.....+. ++..+....|+.-...|+-+.+.++=.++... -|.+.-+.
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 9999999988887764 88888888888888899998888877666654 34444443
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=6.4e-12 Score=91.61 Aligned_cols=214 Identities=10% Similarity=-0.011 Sum_probs=178.6
Q ss_pred CCcccccccc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 3 NGNREFGVVC--KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 3 ~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
+|++-|+... +|-+.||-.|-.+|.+-.+...|+.++.+-.+. .+.|+....-+.+.+-..++.++|.++|+...+.
T Consensus 241 ~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 241 RAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL 319 (478)
T ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence 4555665554 578899999999999999999999999998876 3444444456778888999999999999998876
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036731 81 GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160 (259)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (259)
. +.+++...++...|.-.++++-|+..++++.+.|.. ++..|+.+.-+|.-.+++|.++.-|++....--.|
T Consensus 320 ~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~ 391 (478)
T KOG1129|consen 320 H-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP 391 (478)
T ss_pred C-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc
Confidence 3 346777777888888999999999999999999987 45899999999999999999999999887653333
Q ss_pred C--hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 161 N--VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 161 ~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
+ ..+|-.+-...+..|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++.....
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 3 4478888888899999999999999988764 346788999988889999999999999988765
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.3e-11 Score=95.28 Aligned_cols=205 Identities=13% Similarity=0.051 Sum_probs=170.4
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHH-
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFN- 90 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 90 (259)
+-.+.+|.++...|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.. |...|+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnA 491 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNA 491 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHH
Confidence 446889999999999999999999999999876 44 6788999888899999999999999887765 444444
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 036731 91 --VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168 (259)
Q Consensus 91 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (259)
-|...|.+.++++.|+-.|+...+.+ |. +.+....+...+.+.|+.++|++++++....+.+ |+..--..
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~-----nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEIN--PS-----NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCC--cc-----chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 57788999999999999999988754 43 5688888999999999999999999999887644 55454556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccch
Q 036731 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232 (259)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 232 (259)
...+...+++++|+..++++++. ++-+..+|..+...|.+.|+.+.|..-|.-+.+.+.++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 67778889999999999999987 3445567888889999999999999999988876554433
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=6.5e-10 Score=88.03 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=158.6
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCchHh-HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 19 YNTIIDGL--CKEGFVDKAKELFLQMKDENINPNVVT-YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 19 ~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
+..+..+. ...|+++.|.+.+.+..+. .|+... +-....+....|+++.|.+.+.+..+....+...........
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 33444443 4579999999999887765 455433 344457788899999999999998766322222344446888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---------------
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP--------------- 160 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------- 160 (259)
+...|+++.|...++.+.+.. |+ +..+...+...+...|+++.|.+.+..+.+.++.+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~--P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA--PR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999864 44 45788999999999999999999998888664321
Q ss_pred --------------------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHH---HHHHHHHHhcC
Q 036731 161 --------------------------NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF---TTLMPSFIRKN 211 (259)
Q Consensus 161 --------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~~ 211 (259)
+...+..+...+...|+.++|.+++++..+. .|+.... ..........+
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCC
Confidence 2333344455566778888888888887775 3443321 11112223356
Q ss_pred CHHHHHHHHHHHhhCCCccch--HHHHHHHHHHHHhcccCCcchhhh
Q 036731 212 ETSKVIELLRSMDKRNVMPYA--SILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
+.+.+.+.++...+.. +-+. ....++...+.+.|++++|.+.|+
T Consensus 314 ~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred ChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 7777777777766552 2233 556688888999999999998887
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=6.8e-10 Score=87.53 Aligned_cols=189 Identities=8% Similarity=-0.003 Sum_probs=147.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC-------------------
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ------------------- 83 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------- 83 (259)
...+...|+++.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888887764 445677778888888888888888777777654322
Q ss_pred ----------------------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC
Q 036731 84 ----------------------SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141 (259)
Q Consensus 84 ----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (259)
.++.....+...+...|+.++|.+++++..+. .++ .-..++.+....+
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~--------~~l~~l~~~l~~~ 308 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYD--------ERLVLLIPRLKTN 308 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC--------HHHHHHHhhccCC
Confidence 13334455677788899999999999888773 222 1222344445669
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (259)
+.+++.+..+...+... -|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.++++
T Consensus 309 ~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred ChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999988743 35667888899999999999999999999987 7999999999999999999999999999
Q ss_pred HHhh
Q 036731 222 SMDK 225 (259)
Q Consensus 222 ~~~~ 225 (259)
+...
T Consensus 386 ~~l~ 389 (398)
T PRK10747 386 DGLM 389 (398)
T ss_pred HHHh
Confidence 8654
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=4.5e-09 Score=79.53 Aligned_cols=214 Identities=12% Similarity=-0.020 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
...|..+...+.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.... +..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567788888999999999999999998763 446788999999999999999999999999876422 46678888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (259)
+...|++++|.+.|++..+. .|+. . ........+...++.++|...+++..... .|+. |.. .......
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~-----~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~--~~~-~~~~~~l 209 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPND-----P-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQ--WGW-NIVEFYL 209 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCC-----H-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cccc--cHH-HHHHHHc
Confidence 99999999999999998875 3432 1 11222233455678999999997755432 2232 221 2223345
Q ss_pred CChhHHHHHHHHHHhc---CC--C-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHH
Q 036731 176 EQMDKAHDLFLDMEVK---GV--A-PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (259)
|+...+ ..+..+.+. .. . .....|..+...+.+.|++++|...|++..+.++....+.-..++.....
T Consensus 210 g~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 210 GKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred cCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 665544 344444422 11 1 12457888999999999999999999999887643333333334444333
No 51
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.36 E-value=6.6e-10 Score=93.84 Aligned_cols=126 Identities=9% Similarity=0.025 Sum_probs=86.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (259)
.++..+...|+.++|+..+++.... .+........+...+...|++++|+++|+++.+.... +...+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC
Confidence 7777788888889998888888721 1222333333355778889999999999999887433 4666667788888889
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
+.++|++.++++.... |+ ...+..++..+...++..+|+..++++.+.
T Consensus 151 q~~eAl~~l~~l~~~d--p~------~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 151 RGGVVLKQATELAERD--PT------VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred CHHHHHHHHHHhcccC--cc------hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999988887642 22 244444444444455565588888877765
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=1.1e-09 Score=82.76 Aligned_cols=213 Identities=10% Similarity=-0.037 Sum_probs=151.3
Q ss_pred CChHHHHHHHHHHhhCC-CCCc--hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH
Q 036731 30 GFVDKAKELFLQMKDEN-INPN--VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106 (259)
Q Consensus 30 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 106 (259)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 44566777777777542 2222 35577888889999999999999999988743 36789999999999999999999
Q ss_pred HHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 036731 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186 (259)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 186 (259)
..|++..+. .|+ +..++..+..++...|++++|...++...+.. |+..............+++++|...+.
T Consensus 119 ~~~~~Al~l--~P~-----~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 119 EAFDSVLEL--DPT-----YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHHHHHHHh--CCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999875 444 45788889999999999999999999998864 443322222333456778999999997
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCC---ccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK---RNV---MPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 187 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+..... .|+...+ .+.. ...|+...+ +.+..+.+ ..+ +.....|..+...+.+.|+.++|+..|++
T Consensus 190 ~~~~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 190 QRYEKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHhhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 765432 3332222 2222 334555443 34444432 111 11346788999999999999999999875
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=4.9e-10 Score=85.56 Aligned_cols=207 Identities=16% Similarity=0.141 Sum_probs=164.5
Q ss_pred hcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHH
Q 036731 28 KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107 (259)
Q Consensus 28 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 107 (259)
.+|++++|.+.|++.......-....||.-+ .+-..|++++|++.|-++... +..+..+...+...|-...+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 4688999999999998764443444444433 567789999999999887654 33467777888899999999999999
Q ss_pred HHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 036731 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187 (259)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (259)
++.+... +.|+ |+.+...|...|-+.|+-.+|++.+-+--.. ++-+..+...|..-|....-++++...|++
T Consensus 580 ~~~q~~s--lip~-----dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 580 LLMQANS--LIPN-----DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHhcc--cCCC-----CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9977654 4454 6799999999999999999999987665443 455788888898889999999999999998
Q ss_pred HHhcCCCCcHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcc
Q 036731 188 MEVKGVAPNCVIFTTLMPSF-IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247 (259)
Q Consensus 188 ~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 247 (259)
..- +.|+..-|..++..| .+.|++++|.++++....+ ++-+......+++.+...|.
T Consensus 652 aal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 652 AAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 765 489999999988655 5689999999999998765 56688888888887776664
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=4.4e-09 Score=73.33 Aligned_cols=192 Identities=12% Similarity=-0.016 Sum_probs=159.6
Q ss_pred HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHH
Q 036731 52 VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131 (259)
Q Consensus 52 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (259)
.+...|.-.|...|+...|..-+++.+++... +..+|..+...|.+.|+.+.|.+-|++..+.. |+ +..+.|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~-----~GdVLN 107 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA--PN-----NGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CC-----ccchhh
Confidence 34566778899999999999999999998433 67789999999999999999999999998754 33 458999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 210 (259)
.....+|..|++++|...|++....-. .....+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.......
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKA 186 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhc
Confidence 999999999999999999999887532 2235588899989999999999999999998873 22345677888888999
Q ss_pred CCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcch
Q 036731 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIP 253 (259)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 253 (259)
|++..|...++.....+. ++.......|+.-...|+.+.+-+
T Consensus 187 ~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 187 GDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred ccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999887765 888888888888888887655543
No 55
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=7.7e-09 Score=83.00 Aligned_cols=125 Identities=11% Similarity=0.119 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
++.-+...|-..|++++|+.++++..+.. |+ +..|..-.+.+-+.|++.+|.+.++..+..+ .-|...-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 34455666667777777777777776652 33 4466666677777777777777777776654 23555555666667
Q ss_pred HhcCCHHHHHHHHHHHhhCCCccchHHH--------HHHHHHHHHhcccCCcchhhh
Q 036731 208 IRKNETSKVIELLRSMDKRNVMPYASIL--------SIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.+.|++++|.+++....+.+..|....+ .....+|.+.|++..|++-|.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777777776655543322221 344566677777766666553
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.1e-09 Score=82.64 Aligned_cols=228 Identities=14% Similarity=0.054 Sum_probs=173.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (259)
+.+.....+.-.|+.-.|.+-|+..+...-. +...|--+...|....+.++..+.|++..+.+.. ++.+|..-...+.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRF 405 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHH
Confidence 3333334455678888999999998876422 3333777778899999999999999999887544 6777888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (259)
-.+++++|..=|++.+.. .|+ ++..|.-+.-+..+.+.++++...|++.++. ++--+..|+.....+...++
T Consensus 406 lL~q~e~A~aDF~Kai~L--~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISL--DPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHHHHHHHHHHHHHHhhc--Chh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHh
Confidence 888999999999988764 444 5677777777778889999999999999887 44467789999999999999
Q ss_pred hhHHHHHHHHHHhcC-----C--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCC
Q 036731 178 MDKAHDLFLDMEVKG-----V--APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250 (259)
Q Consensus 178 ~~~a~~~~~~~~~~~-----~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 250 (259)
++.|.+.|+...+.. + .+.+.+-..++..- -.+++..|.+++++..+.+.. ....+..+.+.-.+.|+.++
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHH
Confidence 999999999887651 1 11122222222222 348899999999999887533 55678899999999999999
Q ss_pred cchhhhc
Q 036731 251 SIPQFNR 257 (259)
Q Consensus 251 a~~~~~~ 257 (259)
|+++|++
T Consensus 556 AielFEk 562 (606)
T KOG0547|consen 556 AIELFEK 562 (606)
T ss_pred HHHHHHH
Confidence 9999975
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.27 E-value=8.2e-09 Score=84.74 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHH
Q 036731 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLV 243 (259)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (259)
.|.-+..++...|++.+|+.+|..+......-+...|-.+.++|...|.+++|.+.+...+... +.+...-..|...+.
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQ 494 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHH
Confidence 3455566677777777777777777766444455677777777777777777777777776552 234455556667777
Q ss_pred HhcccCCcchhhhc
Q 036731 244 KNEISLNSIPQFNR 257 (259)
Q Consensus 244 ~~g~~~~a~~~~~~ 257 (259)
+.|+.++|.+.+.+
T Consensus 495 ~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 495 QLGNHEKALETLEQ 508 (895)
T ss_pred hcCCHHHHHHHHhc
Confidence 77777777777655
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.26 E-value=1.9e-08 Score=75.58 Aligned_cols=226 Identities=15% Similarity=0.174 Sum_probs=155.4
Q ss_pred HHHHHHh--cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 036731 22 IIDGLCK--EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99 (259)
Q Consensus 22 ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (259)
+..+..+ .|+|..|+++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.+..+..-.++....-+..+.....
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444433 79999999999998777533 34456666778889999999999999998875556677777788889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHH
Q 036731 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV-------VTYNITIHAL 172 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~ 172 (259)
|+++.|..-++++.+.+.. ++.+.....++|.+.|++.....+...+.+.|.--+. .+|..+++-.
T Consensus 167 ~d~~aA~~~v~~ll~~~pr-------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 167 RDYPAARENVDQLLEMTPR-------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred CCchhHHHHHHHHHHhCcC-------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886544 3489999999999999999999999999988764332 2344444433
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------------------------
Q 036731 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN------------------------- 227 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------- 227 (259)
...+..+.-.+.|+..... .+-++..-..++.-+.+.|+.++|.++..+..+++
T Consensus 240 ~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred hccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHH
Confidence 3333333333344443322 22233334444444445555555544444333211
Q ss_pred -----CccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 228 -----VMPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 228 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.+-++..+..+...|.+.+.|.+|.+.|+
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 22345778889999999999988888776
No 59
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=4.4e-09 Score=80.50 Aligned_cols=183 Identities=11% Similarity=0.038 Sum_probs=138.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCCh
Q 036731 64 ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143 (259)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (259)
.|++++|.+.|.+.....-.-....| .+.-.+-..|++++|++.|-++... -.+ +..+...+...|-...+.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i--l~n-----n~evl~qianiye~led~ 574 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI--LLN-----NAEVLVQIANIYELLEDP 574 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH--HHh-----hHHHHHHHHHHHHHhhCH
Confidence 46788888888887765322122222 2344566778899999888776542 111 557788888889888999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036731 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223 (259)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (259)
.+|++++-+.... ++.|+.....|...|-+.|+-.+|.+.+-+--.- ++.+..+...|...|....-++++..+|++.
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999888776554 4557788889999999999999998876554333 5678899999999999999999999999986
Q ss_pred hhCCCccchHHHHHHHHH-HHHhcccCCcchhhhcc
Q 036731 224 DKRNVMPYASILSIIVDL-LVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~ 258 (259)
.- ++|+..-|..++.. +.+.|++..|+++|+.+
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 53 58899989876655 56789999999999865
No 60
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.19 E-value=1.5e-09 Score=81.27 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCC-chhhHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS-DVVTFNVIMD 94 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 94 (259)
......+.+++...|+++.++ .+..... .|.......+...+...++-+.++.-+++.......+ +.........
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 334455677778888776543 3443333 6666666666655554455556655555544333332 3333233334
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
.+...|++++|++++... . +.......+.+|.+.++++.|.+.++.|.+.+ +..+...+..++..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------G------SLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVN 175 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------T------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcc------C------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHH
Confidence 566678888888877542 1 34677778888999999999999999988753 33444555555443
Q ss_pred ----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc-C
Q 036731 175 ----DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS-L 249 (259)
Q Consensus 175 ----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~ 249 (259)
.+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+. -+..+..-++.+....|+. +
T Consensus 176 l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCH
T ss_pred HHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChh
Confidence 34688999999998665 567888888888888999999999999988876653 3566666777777777777 3
Q ss_pred Ccchhhhcc
Q 036731 250 NSIPQFNRQ 258 (259)
Q Consensus 250 ~a~~~~~~~ 258 (259)
.+.+.+.++
T Consensus 254 ~~~~~l~qL 262 (290)
T PF04733_consen 254 AAERYLSQL 262 (290)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 344555544
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=2.4e-08 Score=79.54 Aligned_cols=210 Identities=15% Similarity=0.105 Sum_probs=154.1
Q ss_pred CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc-----C-CCCchh-hHHHHHHHHHHcCCHHHHHHHHHHHHhC---
Q 036731 46 NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-----G-LQSDVV-TFNVIMDELCKNRKMDEATRLLDLMIQG--- 115 (259)
Q Consensus 46 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 115 (259)
+.+.-..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33334566677889999999999999999988754 2 123333 3344777899999999999999987632
Q ss_pred CCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-CCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 036731 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-----GLM-PNV-VTYNITIHALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~li~~~~~~~~~~~a~~~~~~~ 188 (259)
...++. +.-..+++.|...|.+.|++++|...++...+. |.. |.. ..++.+...+...+++++|..+++..
T Consensus 274 ~~G~~h--~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 274 VFGEDH--PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred hcCCCC--HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 122221 224678888999999999999999888876532 211 222 24667778888999999999999876
Q ss_pred Hhc---CCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C--CccchHHHHHHHHHHHHhcccCCcchh
Q 036731 189 EVK---GVAP----NCVIFTTLMPSFIRKNETSKVIELLRSMDKR-----N--VMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 189 ~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
.+. -..+ -..+++.|...|...|++++|.++++..+.. + ..-....++.+...|.+.++..+|.++
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 543 1112 2467999999999999999999999987642 1 222355788899999999999999999
Q ss_pred hhc
Q 036731 255 FNR 257 (259)
Q Consensus 255 ~~~ 257 (259)
|.+
T Consensus 432 ~~~ 434 (508)
T KOG1840|consen 432 FEE 434 (508)
T ss_pred HHH
Confidence 875
No 62
>PF12854 PPR_1: PPR repeat
Probab=99.16 E-value=6.2e-11 Score=57.92 Aligned_cols=34 Identities=62% Similarity=0.995 Sum_probs=25.8
Q ss_pred ccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036731 10 VVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMK 43 (259)
Q Consensus 10 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 43 (259)
+|++||..|||+||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3667777788888888888888888877777763
No 63
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.14 E-value=5e-08 Score=80.97 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=168.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchh--hH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN--PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV--TF 89 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~ 89 (259)
-|+...+.|...|.-.|++..+..+...+...... .-...|..+.++|-..|++++|..+|.+..+. .++.. .+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 46777888889999999999999999888765311 22456888899999999999999999888765 33433 33
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCChhhH
Q 036731 90 NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG----KLKNARELSQSLTRAGLMPNVVTY 165 (259)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 165 (259)
--+...|...|+++.+...|+.+.+. .|+ +..+...+...|...+ ..+.|..++.+..+.- +.|...|
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~--~p~-----~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQ--LPN-----NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHh--Ccc-----hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 45788899999999999999998875 333 4577777777777665 4567777777776653 3367777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH----hcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCccch------
Q 036731 166 NITIHALCNDEQMDKAHDLFLDME----VKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR---NVMPYA------ 232 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------ 232 (259)
-.+...+....- ..++.+|.... ..+..+.+...|.+.......|.+.+|...|...... ...++.
T Consensus 418 l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 777777665444 33366666543 4455577889999999999999999999999887654 112222
Q ss_pred HHHHHHHHHHHHhcccCCcchhhhc
Q 036731 233 SILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 233 ~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
.+-.-+..++...++++.|.+.|+.
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 2333466667777788888887765
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5.6e-08 Score=75.07 Aligned_cols=127 Identities=9% Similarity=0.078 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
..|.-+...|....+.++..+.|....+.+.. ++.+|..-.+...-.+++++|..=|++..... +-+...|..+.-+.
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCAL 438 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHH
Confidence 34777777788888888888888888776543 66777777777777888888888888887652 22345566666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
.+.+++++++..|++.+++ ++..++.|+...+.+...+++++|.+.|+.
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 7889999999999999876 456788999999999999999999998864
No 65
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=1.4e-08 Score=76.11 Aligned_cols=198 Identities=14% Similarity=0.059 Sum_probs=138.3
Q ss_pred ccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHH
Q 036731 12 CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFN 90 (259)
Q Consensus 12 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (259)
..|.......+...+...++-+.+..-+++....+..+ +..........+...|++++|++++..- .+.....
T Consensus 62 ~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~a 135 (290)
T PF04733_consen 62 SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLA 135 (290)
T ss_dssp SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHH
T ss_pred CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHH
Confidence 35666666666555554455566666665554443332 3333333335667789999999988542 3567777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhhHH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC----KIGKLKNARELSQSLTRAGLMPNVVTYN 166 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (259)
..+.+|.+.++++.|.+.++.|.+.+ .| .+...+..++. -.+.+.+|..+|+++.+. ..+++.+.+
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~ln 205 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQID--ED-------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLN 205 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCS--CC-------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHH
Confidence 88999999999999999999998753 22 44444555443 334699999999998765 567888899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhC
Q 036731 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET-SKVIELLRSMDKR 226 (259)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 226 (259)
.+..++...|++++|..++.+..+.+ +-++.+...++.+....|+. +.+.+++.++...
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999999988664 34677888888888888888 7788888888765
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.5e-07 Score=73.97 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
++.|..++.+.+.+++|+..++...... +-+..++.++.-.|...|+++.|.+.|.+.+
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4444444444444444444444444331 2344444444444444444444444444443
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.07 E-value=1.9e-09 Score=88.35 Aligned_cols=183 Identities=19% Similarity=0.215 Sum_probs=128.6
Q ss_pred HHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 036731 37 ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116 (259)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 116 (259)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667888899999999999999999999999999 9999988878888999999999999998877765
Q ss_pred CCCCCccchhHHHHHHHHHHHHhcCChHH---HHHHHHHH----HHcCC-----------------CCChhhHHHHHHHH
Q 036731 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKN---ARELSQSL----TRAGL-----------------MPNVVTYNITIHAL 172 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~-----------------~~~~~~~~~li~~~ 172 (259)
.| ...+|+.+..+|...||+.. +.+.+..+ ...|+ -||..+ .+...
T Consensus 80 -ep------~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illl 149 (1088)
T KOG4318|consen 80 -EP------LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLL 149 (1088)
T ss_pred -CC------chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHH
Confidence 23 34899999999999998754 33322222 12222 122211 11111
Q ss_pred HhcCChhHHHHHH----------------HHH-------------HhcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036731 173 CNDEQMDKAHDLF----------------LDM-------------EVKGV-APNCVIFTTLMPSFIRKNETSKVIELLRS 222 (259)
Q Consensus 173 ~~~~~~~~a~~~~----------------~~~-------------~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (259)
...|.++.+++++ +++ .+... .|++.+|..++.+-...|+.+.|..++.+
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2222223222222 111 11111 47889999999999999999999999999
Q ss_pred HhhCCCccchHHHHHHHH
Q 036731 223 MDKRNVMPYASILSIIVD 240 (259)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~ 240 (259)
|.+.|++.+..-|..++-
T Consensus 230 mke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred HHHcCCCcccccchhhhh
Confidence 999998777665555543
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.8e-07 Score=72.46 Aligned_cols=231 Identities=10% Similarity=-0.018 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
++.....-..-+-..+++.+..++.+...+. .++....+-.-|.++...|+..+-..+=.++.+. .+....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3444444455566677777777777777665 3555555655566667777766666666666665 3335667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
-|...|..++|.+.|.+....+..- ...|..+...|.-.|+.++|...+....+.= +-...-+--+.--|.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~f-------gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTF-------GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccc-------cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 6777777777777777665433221 2466666666666666666666665544320 0000011112222344
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCccchHHHHHHHHHHHHhccc
Q 036731 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR------NVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
.++.+.|.++|.+.... .+-|+...+-+.-.....+.+.+|..+|+..+.. ....+..+++-|..+|.+.+..
T Consensus 393 t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 45555555555544433 1223334444443334444455555544443310 0011334444444555555555
Q ss_pred CCcchhhh
Q 036731 249 LNSIPQFN 256 (259)
Q Consensus 249 ~~a~~~~~ 256 (259)
++|+..|+
T Consensus 472 ~eAI~~~q 479 (611)
T KOG1173|consen 472 EEAIDYYQ 479 (611)
T ss_pred HHHHHHHH
Confidence 44444443
No 69
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.04 E-value=2.6e-07 Score=67.76 Aligned_cols=187 Identities=9% Similarity=-0.048 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc---hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch--hh
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN---VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV--VT 88 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 88 (259)
..+..+-.+...+.+.|+++.|...|+++.... +.+ ..++..+..++...|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356778888899999999999999999987752 222 246677888999999999999999999876432111 24
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036731 89 FNVIMDELCKN--------RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160 (259)
Q Consensus 89 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (259)
+..+..++... |+.++|.+.++.+.... |+. ...+..+...... .. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~-----~~~~~a~~~~~~~----~~------~~~------ 166 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNS-----EYAPDAKKRMDYL----RN------RLA------ 166 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCC-----hhHHHHHHHHHHH----HH------HHH------
Confidence 55556666654 77899999999988653 321 1222222111110 00 000
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKG--VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
.....+...+...|++.+|...++...+.. .+.....+..+..++...|++++|..+++.+...
T Consensus 167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011245566788899999999998887662 1223567888888999999999999988887754
No 70
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.04 E-value=6e-07 Score=72.06 Aligned_cols=225 Identities=10% Similarity=0.022 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
.||+.-.+.|.+.+.++-|..+|....+- .+-+...|......=-..|..++...++++.... .+-....|......+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHH
Confidence 34555555556666666666666555543 2334444444444444445555555555555444 122333344444444
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH----------
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN---------- 166 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 166 (259)
-..|+...|..++.+..+.... +...|..-+..-..+.+++.|..+|.+.... .|+...|.
T Consensus 595 w~agdv~~ar~il~~af~~~pn-------seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-------SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-------cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 4445555555555444443211 2244444444444444444444444444332 23444444
Q ss_pred ------------------------HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036731 167 ------------------------ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222 (259)
Q Consensus 167 ------------------------~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (259)
.+.+.+.+.++.+.|...|..-.+. ++-....|-.|...-.+.|.+-.|..++++
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4444444444444444444333322 122233444444444555566666666666
Q ss_pred HhhCCCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 223 MDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
.+-++ +-+...|...+++=.+.|+.+.|..+
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 55544 23555666666666666666555443
No 71
>PLN02789 farnesyltranstransferase
Probab=99.03 E-value=1.1e-06 Score=66.89 Aligned_cols=217 Identities=12% Similarity=0.043 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC-ChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN-DGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
.+++.+-..+...+..++|+.+..++++.. +-+..+|+..-.++...| ++++++..++++.+...+ +..+|+.-..+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 345556666777889999999999998763 334556666666666667 679999999999987544 66678776666
Q ss_pred HHHcCCH--HHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 96 LCKNRKM--DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 96 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
+.+.|.. ++++.+++++.+.+.+ +..+|+...-++...|+++++++.++++.+.++. +...|+.....+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~ 187 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVIT 187 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHH
Confidence 6666653 6788888888875433 5689999999999999999999999999998765 6667777666555
Q ss_pred hc---CCh----hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCccchHHHHHHHHHH
Q 036731 174 ND---EQM----DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK----NETSKVIELLRSMDKRNVMPYASILSIIVDLL 242 (259)
Q Consensus 174 ~~---~~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (259)
+. |.. ++......++.... +-|...|+.+...+... +...+|.+.+.+..+.+ ..+...+..+++.|
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~ 265 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLL 265 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHH
Confidence 44 222 45666666666552 34566787777777663 34566888888877654 34667888899998
Q ss_pred HHh
Q 036731 243 VKN 245 (259)
Q Consensus 243 ~~~ 245 (259)
+..
T Consensus 266 ~~~ 268 (320)
T PLN02789 266 CEG 268 (320)
T ss_pred Hhh
Confidence 864
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.02 E-value=4.3e-07 Score=66.64 Aligned_cols=186 Identities=12% Similarity=-0.051 Sum_probs=128.6
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC-C-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchh
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ-S-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN 126 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 126 (259)
.....+..+...+...|+++.|...++++...... | ...++..+..++...|++++|...++++.+....... -
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD----A 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc----h
Confidence 34567777888899999999999999999876322 1 1246677889999999999999999999875322111 1
Q ss_pred HHHHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH
Q 036731 127 IVAYGCLIDGLCKI--------GKLKNARELSQSLTRAGLMPNVV-TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197 (259)
Q Consensus 127 ~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 197 (259)
..++..+..++... |++++|...++.+.+.. |+.. .+..+.... . ... .. .
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~~~------~~--------~ 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---LRN------RL--------A 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---HHH------HH--------H
Confidence 12455556666554 77889999999988763 3332 222221110 0 000 00 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--ccchHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNV--MPYASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
.....+...+.+.|++++|...+++..+... +.....+..+..++.+.|+.++|.++++.+
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122556778899999999999999887532 224578889999999999999999988764
No 73
>PF12854 PPR_1: PPR repeat
Probab=99.02 E-value=5e-10 Score=54.67 Aligned_cols=32 Identities=53% Similarity=0.810 Sum_probs=18.8
Q ss_pred CCCCchHhHHHHHHHHhhcCChhHHHHHHHHH
Q 036731 46 NINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77 (259)
Q Consensus 46 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 77 (259)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555666666666666666666666555554
No 74
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.01 E-value=7.1e-07 Score=77.12 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=177.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCc---hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPN---VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFN 90 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (259)
+...|-..|....+.++.++|.++.++.+.. ++.-. ...|.++++.-..-|.-+...++|+++.+.. . .-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHH
Confidence 4567888899999999999999999998765 22222 3467777777777788888999999998762 2 345688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-PNVVTYNITI 169 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 169 (259)
.|...|.+.+..++|.++++.|.+.-- . ....|...+..+.+.++-+.|..++.+..+.=.+ -........+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-Q------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-c------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 899999999999999999999986522 1 3489999999999999999999999998775211 1233555666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccc--hHHHHHHHHHHHHhcc
Q 036731 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY--ASILSIIVDLLVKNEI 247 (259)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 247 (259)
..-.+.|+.+.+..+|+..... .+--...|+.+++.-.++|+.+.++.+|++....++.|- -..|...++.=...|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 7777899999999999999876 233567899999999999999999999999999887763 3356666665555566
Q ss_pred cCC
Q 036731 248 SLN 250 (259)
Q Consensus 248 ~~~ 250 (259)
-+.
T Consensus 1687 e~~ 1689 (1710)
T KOG1070|consen 1687 EKN 1689 (1710)
T ss_pred hhh
Confidence 543
No 75
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.4e-07 Score=78.50 Aligned_cols=202 Identities=11% Similarity=0.086 Sum_probs=146.7
Q ss_pred cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC-CCCchhhHHHHHHHHHH---------
Q 036731 29 EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG-LQSDVVTFNVIMDELCK--------- 98 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--------- 98 (259)
.+...+|...+....... ..++..+..+...+.+...+..|.+-|....+.- ..+|..+...|.+.|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 355566666666665432 3355556666667777777777777666554332 22466666666665553
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036731 99 ---NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 99 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (259)
.+..++|+++|.++.+.... |...-|-+.-+++..|++..|..+|.+..+.... ...+|-.+.++|...
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpk-------N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPK-------NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQ 693 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc-------hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHH
Confidence 23567889999888875432 5677788888899999999999999999987542 566899999999999
Q ss_pred CChhHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHH
Q 036731 176 EQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (259)
|++..|.++|+..... .-.-+..+...|.+++.+.|.+.+|.+.+.......+.-+...|+..+
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999999999987654 445578889999999999999999999998887665444445555433
No 76
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.98 E-value=1.4e-06 Score=70.01 Aligned_cols=229 Identities=13% Similarity=0.062 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
....|-.....+-..|++..|..++....+.. +-+...|-.-+..-.....++.|..+|.+.... .|+...|..-+.
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSAN 659 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhH
Confidence 33445445555566677777777776666553 225566666666666777777777777766653 456666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
.---.+..++|.+++++..+. .|+ -...|..+.+.+-+.++.+.|...|..-.+. ++.....|-.+...-.+
T Consensus 660 ~er~ld~~eeA~rllEe~lk~--fp~-----f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKS--FPD-----FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEK 731 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHh--CCc-----hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHH
Confidence 656667777777777776654 232 3467777888888888888888887765554 34456678888888888
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
.|.+-.|..++++.+-.+ +-+...|-..|+.-.+.|..+.|..++.+.+.. ++.+...|..-|...-+.++-..+...
T Consensus 732 ~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred hcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHH
Confidence 999999999999988774 457788999999999999999999999998875 455677777777766666655544444
Q ss_pred hh
Q 036731 255 FN 256 (259)
Q Consensus 255 ~~ 256 (259)
++
T Consensus 810 Lk 811 (913)
T KOG0495|consen 810 LK 811 (913)
T ss_pred HH
Confidence 43
No 77
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.98 E-value=2.8e-07 Score=76.08 Aligned_cols=223 Identities=16% Similarity=0.141 Sum_probs=150.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC-CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCC-------------------
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL------------------- 82 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------------------- 82 (259)
++.+...++-+.|.+.++..... +-..+...++.++..+.+...++.|.....++.....
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 34455555556666666665542 2234555666677777777777777766666654111
Q ss_pred --------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036731 83 --------QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154 (259)
Q Consensus 83 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (259)
.++..+ .-++-++.+....+....+..-+.+....++. +...|.-+..++...|++.+|+.++..+.
T Consensus 367 ~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d----~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 367 LCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSD----DVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred cccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhh----hHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 111122 11222333334444444444444455444443 77899999999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------C
Q 036731 155 RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK--------R 226 (259)
Q Consensus 155 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~ 226 (259)
....--+...|-.+.++|...|.++.|.+.|+..+... +-+...-..|...+.+.|+.++|.+.+..+.. .
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 87555567789999999999999999999999998762 33445566777888899999999999998653 2
Q ss_pred CCccchHHHHHHHHHHHHhcccCCc
Q 036731 227 NVMPYASILSIIVDLLVKNEISLNS 251 (259)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~g~~~~a 251 (259)
...|.........+.+.+.|+.++=
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHH
Confidence 3456666666777778888877653
No 78
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=4.3e-08 Score=79.07 Aligned_cols=203 Identities=14% Similarity=0.139 Sum_probs=120.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH---
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK--- 98 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 98 (259)
+...+...|-...|..+|++.. .|...|.+|...|+..+|..+..+..+. +|++..|..+.+....
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 3344444555555555554432 3444445555555555555554444442 4444444444444333
Q ss_pred -------------------------cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036731 99 -------------------------NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153 (259)
Q Consensus 99 -------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (259)
.++++++.+.|+.-.+.+. .-..+|-.+..+..+.++++.|.+.|...
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np-------lq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP-------LQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc-------cchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 4455555555544333211 12367777777777888888888888877
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-Cccch
Q 036731 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN-VMPYA 232 (259)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 232 (259)
..... -+...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|...+......|.+++|.+.+.++.+.. ...+.
T Consensus 546 vtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 546 VTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred hhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 66532 245578888888888888888888888887776 4456677777777788888888888888765421 12255
Q ss_pred HHHHHHHHHHHH
Q 036731 233 SILSIIVDLLVK 244 (259)
Q Consensus 233 ~~~~~l~~~~~~ 244 (259)
.+...++....+
T Consensus 624 ~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 624 EVLLIIVRTVLE 635 (777)
T ss_pred hhhHHHHHHHHh
Confidence 555555554443
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=8.6e-07 Score=69.26 Aligned_cols=158 Identities=12% Similarity=0.042 Sum_probs=98.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHh----hcCChhHHHHHHHHHHHcCCCCc-hhhHHHHHHHHH
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC----YANDGNEAEYLFIEMMDRGLQSD-VVTFNVIMDELC 97 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 97 (259)
...+...|++++|.+++++..+.. +.+...+.. ...+. ..+....+.+.+.. .....|+ ......+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 344566788888888888877652 333334332 21222 23444444444443 1112222 333445566777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh--hhHHHHHHHHHh
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-PNV--VTYNITIHALCN 174 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~ 174 (259)
..|++++|...+++..+.. |+ +...+..+..++...|++++|...+++....... |+. ..|..+...+..
T Consensus 126 ~~G~~~~A~~~~~~al~~~--p~-----~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 126 EAGQYDRAEEAARRALELN--PD-----DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC--CC-----CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 8888888888888887753 33 3467777888888888888888888887764321 222 234567777888
Q ss_pred cCChhHHHHHHHHHHhc
Q 036731 175 DEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~ 191 (259)
.|++++|..++++....
T Consensus 199 ~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 199 RGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 88888888888887543
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=6e-07 Score=70.78 Aligned_cols=224 Identities=13% Similarity=0.058 Sum_probs=162.0
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHH
Q 036731 26 LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105 (259)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 105 (259)
+.+.|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+++..+.... |......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 457788888888888877663 446778888888888888777788888877776322 455666666667666666666
Q ss_pred HHHHHHHHhCCCC---------CCC------c---------------------cchhHHHHHHHHHHHHhcCChHHHHHH
Q 036731 106 TRLLDLMIQGGVR---------PDA------F---------------------CEINIVAYGCLIDGLCKIGKLKNAREL 149 (259)
Q Consensus 106 ~~~~~~~~~~~~~---------~~~------~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (259)
...++.=.....+ +.. + ..+|+.++..|.-.|.-.|++++|.+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 6666543221100 000 0 225778899999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh---
Q 036731 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC-VIFTTLMPSFIRKNETSKVIELLRSMDK--- 225 (259)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 225 (259)
|+....... -|..+||.|...+....+.++|...|++.++. +|+. .+...|.-+|...|.+++|.+.|-..+.
T Consensus 453 f~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999988643 26779999999999999999999999999986 6664 4555677789999999999998877542
Q ss_pred C------CCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 226 R------NVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 226 ~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
. ...++..+|..|-.++.-.++.+-+.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2 2233456788777777777777644443
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.94 E-value=1.1e-06 Score=62.31 Aligned_cols=119 Identities=11% Similarity=0.077 Sum_probs=74.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHH-HhcCC
Q 036731 64 ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL-CKIGK 142 (259)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 142 (259)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.. |+ +...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~-----~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GE-----NAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHhcCC
Confidence 455566666666655553 3356667777777777777777777777666543 33 446666666653 45555
Q ss_pred --hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 143 --LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 143 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
.++|..++++..+.+.. +..++..+...+...|++++|...|+++.+.
T Consensus 124 ~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 124 HMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36777777777666433 5556666666666777777777777776665
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=7e-06 Score=64.17 Aligned_cols=201 Identities=12% Similarity=0.043 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCch-HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNV-VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
+..|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|...+++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 45677777778788888887777776654421 1222 122223345678899999999999988763 224444442 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 036731 94 DELCK----NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITI 169 (259)
Q Consensus 94 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 169 (259)
..+.. .+..+.+.+.+.. .....|. .......+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~-----~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la 155 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPD-----YWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVA 155 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 23333 3444555555443 1112222 33455566778899999999999999999875 33566778888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCC-CCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 170 HALCNDEQMDKAHDLFLDMEVKGV-APNC--VIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
.++...|++++|...+++.....- .|+. ..|..+...+...|++++|..++++....
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 899999999999999999886521 2232 34567888899999999999999998644
No 83
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=6.2e-07 Score=77.46 Aligned_cols=209 Identities=9% Similarity=0.051 Sum_probs=166.1
Q ss_pred HHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc-----hhhHHHHHHHHHHcCCHHHHHHH
Q 036731 34 KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD-----VVTFNVIMDELCKNRKMDEATRL 108 (259)
Q Consensus 34 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~ 108 (259)
.|.++-+..+.+ +-+...|-..|......++.+.|.++.++++.. +.+. ...|.++++.-..-|.-+...++
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 444444444432 334667888899999999999999999998864 3222 24677788877778888889999
Q ss_pred HHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036731 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 188 (259)
|+++.+.- .| ..+|..|...|.+.+.+++|-++++.|.+. +.-....|...+..+.++++-+.|..++.+.
T Consensus 1520 FeRAcqyc-d~-------~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1520 FERACQYC-DA-------YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHHHHhc-ch-------HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99998753 22 378999999999999999999999999876 3347789999999999999999999999998
Q ss_pred HhcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 189 EVKGVAPN---CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 189 ~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
.+. -|. .....-.+..-.+.|+.+.+..+|+...... +--...|+.+++.=.++|+.+.+..+|+|
T Consensus 1591 L~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1591 LKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred Hhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 876 333 3445555666678999999999999988663 33567999999999999999999988876
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.89 E-value=2.4e-06 Score=60.67 Aligned_cols=163 Identities=12% Similarity=0.097 Sum_probs=120.1
Q ss_pred HHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHH
Q 036731 58 IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137 (259)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (259)
+..|...|+++.+....+.+... . . .+...++.+++...+++..+. .|+ +...|..+...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~-----~~~~w~~Lg~~~ 83 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L-H-------QFASQQTPEAQLQALQDKIRA--NPQ-----NSEQWALLGEYY 83 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c-c-------cccCchhHHHHHHHHHHHHHH--CCC-----CHHHHHHHHHHH
Confidence 35678888888875554322211 1 0 112256677888888777765 344 678999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCC--hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 036731 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL-CNDEQ--MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214 (259)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 214 (259)
...|++++|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+.+.|+++
T Consensus 84 ~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHH
Confidence 9999999999999999987533 677777777764 67777 599999999999884 336778888899999999999
Q ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHHH
Q 036731 215 KVIELLRSMDKRNVMPYASILSIIVDLLV 243 (259)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (259)
+|...|+++.+.. +|+..-+..+ +...
T Consensus 162 ~Ai~~~~~aL~l~-~~~~~r~~~i-~~i~ 188 (198)
T PRK10370 162 QAIELWQKVLDLN-SPRVNRTQLV-ESIN 188 (198)
T ss_pred HHHHHHHHHHhhC-CCCccHHHHH-HHHH
Confidence 9999999998874 4455444433 5433
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.89 E-value=6.7e-06 Score=68.94 Aligned_cols=132 Identities=12% Similarity=0.097 Sum_probs=74.0
Q ss_pred chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHH
Q 036731 50 NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128 (259)
Q Consensus 50 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
+...+..|.....+.|++++|..+++...+. .| +......+...+.+.+++++|+..+++..... |+ +..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~-----~~~ 155 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SS-----SAR 155 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CC-----CHH
Confidence 3555555555556666666666666666554 22 33444555566666666666666666655542 22 345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
....+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555566666666666666666665532 123455555566666666666666666665544
No 86
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.7e-06 Score=67.07 Aligned_cols=153 Identities=10% Similarity=0.069 Sum_probs=100.3
Q ss_pred CCCccccccc--ccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 036731 2 ANGNREFGVV--CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 2 ~~a~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 79 (259)
+.|+.+|++= .+|+..+|++.|..-.+-+.++.|..+|++..-- .|++.+|-...+.=.+.|....|..+|+...+
T Consensus 158 ~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4566677663 5789999999999999999999999999888754 58888888888888888888888888887765
Q ss_pred c-CC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-----------------------------------
Q 036731 80 R-GL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----------------------------------- 122 (259)
Q Consensus 80 ~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------------- 122 (259)
. |- ..+...+.+....=.++..++.|.-+|.-..+.-.+....
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 3 10 1112233333333334455555555555444321110000
Q ss_pred --cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 123 --CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 123 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
.+.|-.+|--.++.-...|+.+...++|+.....
T Consensus 316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 2335567777777777778888888887777654
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.86 E-value=1.9e-07 Score=62.77 Aligned_cols=108 Identities=10% Similarity=-0.122 Sum_probs=92.5
Q ss_pred cccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch
Q 036731 7 EFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV 86 (259)
Q Consensus 7 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (259)
.|+..++-++..+......+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+.
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~ 92 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHP 92 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCc
Confidence 4455555566667778889999999999999999998774 4578889999999999999999999999999874 3478
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQGG 116 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 116 (259)
..+..+..++...|++++|...|+......
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 889999999999999999999999998753
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.7e-06 Score=64.87 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchH-hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHH
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVV-TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (259)
+-|+.....+...+...|+.++|+..|+..... .|... ........+.+.|+++....+...+.... +.+...|..
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 345666666777777777777777777766543 22211 11111112234444444444444333221 111222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA 171 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (259)
-+.......+++.|+.+-++.++.+.. ++..+..-...+...+++++|.-.|+.....- +-+...|.-|+.+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-------NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-------cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 222222333344444444433332111 22233333333444444444444444444321 1133444445555
Q ss_pred HHhcCChhH------------------------------------HHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCCHH
Q 036731 172 LCNDEQMDK------------------------------------AHDLFLDMEVKGVAPNC-VIFTTLMPSFIRKNETS 214 (259)
Q Consensus 172 ~~~~~~~~~------------------------------------a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~ 214 (259)
|...|.+.+ |..++++-... .|+. ...+.+...+...|..+
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccc
Confidence 444444444 44444443332 3432 33455667777888888
Q ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 215 KVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.+..+++..... .||....+.+.+.+...+.+.+|++.|.
T Consensus 456 D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 456 DIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred hHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888888877654 6788888888888888888888887764
No 89
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2.2e-06 Score=61.51 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (259)
.....-...|...|++++|++...... +......=+.++.+..+.+.|.+.+++|.+.. +..|.+
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~------------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLt 173 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGE------------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLT 173 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHH
Confidence 333344566888899999988876521 22444455666777788889999999988753 566777
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHH
Q 036731 167 ITIHALCN----DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242 (259)
Q Consensus 167 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (259)
.|..++.+ .+.+..|..+|++|.++ ..|++.+.+-...++...|++++|..++++.+.+... +..+..-++.+-
T Consensus 174 QLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a 251 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHH
Confidence 67666654 45688899999998874 5788888888888888999999999999998877533 556666666666
Q ss_pred HHhcccCC
Q 036731 243 VKNEISLN 250 (259)
Q Consensus 243 ~~~g~~~~ 250 (259)
...|...+
T Consensus 252 ~~~Gkd~~ 259 (299)
T KOG3081|consen 252 LHLGKDAE 259 (299)
T ss_pred HHhCCChH
Confidence 66665543
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=5.1e-06 Score=59.48 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=128.2
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHH
Q 036731 55 NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134 (259)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 134 (259)
..+-..+...|+-+....+....... .+.+....+.++....+.|++..|...+.+.... .|+ |..+|+.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~-----d~~~~~~lg 141 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APT-----DWEAWNLLG 141 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCC-----ChhhhhHHH
Confidence 55666777788888888877765543 2346667777899999999999999999988764 333 679999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 036731 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214 (259)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 214 (259)
-+|.+.|+.+.|..-|.+..+.... +...++.+.-.+.-.|+++.|..++......+ .-|..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 9999999999999999998886432 56678888888889999999999999988774 336777788888888999999
Q ss_pred HHHHHHHHHh
Q 036731 215 KVIELLRSMD 224 (259)
Q Consensus 215 ~a~~~~~~~~ 224 (259)
+|..+...-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 9998876544
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=1.3e-05 Score=64.96 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (259)
++..+...|...|++++|++++++.++. .|+ .+..|..-.+.+-..|++++|...++.....+.. |...=+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt-----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPT-----LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSK 267 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHH
Confidence 4455677788999999999999998886 444 4689999999999999999999999999988654 7777788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHH--------HHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF--------TTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--------~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
....+.+.|+.++|.+++......+..|-...+ .....+|.+.|++..|.+.|..+.+
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888999999999999999998877654432221 2345688899999998887766543
No 92
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=7.6e-06 Score=69.64 Aligned_cols=216 Identities=10% Similarity=0.057 Sum_probs=146.4
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCch-HhHHHHHHHHhhcCChhHHHHHHHHHHHcC----------
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV-VTYNSLIHGFCYANDGNEAEYLFIEMMDRG---------- 81 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------- 81 (259)
..+...|..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++..++..+ .+...-
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 457788999999999999999999999977765 3443 3344444456666666655544 332220
Q ss_pred --------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036731 82 --------LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153 (259)
Q Consensus 82 --------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (259)
..-+...+..+..+|-+.|+.++|..+++++.+.. |+ ++.+.|.+...|... ++++|.+++.+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~-----n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RD-----NPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cc-----cHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 11123567778888999999999999999999876 44 679999999999999 999999999887
Q ss_pred HHcCCCCChhhHHHHHHHHH-----hcCChhHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 154 TRAGLMPNVVTYNITIHALC-----NDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
...-+ +..-|+.+...+. ...+.+.-..+.+.+... |..--..++..+...|...++++++..+++.+++..
T Consensus 176 V~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 176 IYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred HHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 76411 1112222222111 122333444444444433 333344566667788888999999999999999875
Q ss_pred CccchHHHHHHHHHHH
Q 036731 228 VMPYASILSIIVDLLV 243 (259)
Q Consensus 228 ~~~~~~~~~~l~~~~~ 243 (259)
.. +.....-++.+|.
T Consensus 254 ~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 254 NK-NNKAREELIRFYK 268 (906)
T ss_pred Cc-chhhHHHHHHHHH
Confidence 33 5666667777775
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=6.4e-07 Score=72.53 Aligned_cols=183 Identities=13% Similarity=0.083 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhc----------------------------CCh
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA----------------------------NDG 67 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------------------~~~ 67 (259)
...|..+|.+|...|+-.+|..+..+..++ +|+...|..+.+..... +++
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDF 501 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhH
Confidence 456888999999999999999999888774 77888888777554333 445
Q ss_pred hHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHH
Q 036731 68 NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147 (259)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (259)
+++.+.|+.-.+.+ +.-..+|-.+.-+..+.++++.|.+.|...... .|+ +...||.+-.+|.+.++-.+|.
T Consensus 502 s~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd-----~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 502 SEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPD-----NAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred HHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCC-----chhhhhhhhHHHHHHhhhHHHH
Confidence 55555555444432 224567777777888899999999999888764 555 4589999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHh
Q 036731 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG-VAPNCVIFTTLMPSFIR 209 (259)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~ 209 (259)
..+++..+.+ .-+...|...+....+.|.+++|.+.+.++.... ...|..+...++....+
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 9999999987 4467788888889999999999999999887542 12255555555554433
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=2e-06 Score=57.83 Aligned_cols=95 Identities=11% Similarity=-0.113 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHH
Q 036731 54 YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133 (259)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (259)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++....+ |+ +...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~-----~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--AS-----HPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----CcHHHHHH
Confidence 4445556666677777777777666553 2255666666667777777777777777666542 32 34666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 036731 134 IDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
..++...|++++|...|+...+.
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66777777777777777766654
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=3.3e-06 Score=70.75 Aligned_cols=136 Identities=12% Similarity=0.074 Sum_probs=98.1
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 036731 82 LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161 (259)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (259)
...+...+-.|.....+.|.+++|..+++...+. .|+ +......+..++.+.+++++|...+++....... +
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd-----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~ 153 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPD-----SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-S 153 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-C
Confidence 3445777777778888888888888888877764 454 4577777788888888888888888887776422 4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
......+..++...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666677777888888888888887642 233667777777777788888888888877654
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=3.7e-06 Score=60.20 Aligned_cols=160 Identities=13% Similarity=0.022 Sum_probs=127.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 036731 20 NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99 (259)
Q Consensus 20 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (259)
..+-..+.-.|+-+....+....... .+.|....+..+....+.|++..|...+.+.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 33445555566666666665554322 2345556677889999999999999999999876 466999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 036731 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMD 179 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 179 (259)
|+.+.|..-|.+..+.... +....+.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|+++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred cChhHHHHHHHHHHHhccC-------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 9999999999998875332 3489999999999999999999999998887543 7778888999999999999
Q ss_pred HHHHHHHHHH
Q 036731 180 KAHDLFLDME 189 (259)
Q Consensus 180 ~a~~~~~~~~ 189 (259)
+|.++-..-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 9998875544
No 97
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.72 E-value=3.1e-08 Score=49.01 Aligned_cols=34 Identities=59% Similarity=1.003 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCch
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV 51 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 51 (259)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6788888888888888888888888888887763
No 98
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=2.2e-05 Score=61.16 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCch--HhHHHHHHH--------HhhcCChhHHHHHHHHHHHcCCCC
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV--VTYNSLIHG--------FCYANDGNEAEYLFIEMMDRGLQS 84 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~~~~~ 84 (259)
|-.+|--.+..-...|+.+...++|++.... ++|-. ..|...|.. =....+.+.+.++|+...+. ++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 5667777788888889999999999999875 55532 223322221 13568899999999999884 565
Q ss_pred chhhHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036731 85 DVVTFNVIMDEL----CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160 (259)
Q Consensus 85 ~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (259)
...||..+=-.| .++.++..|.+++...+. .-|.. .+|-..|..=.+.++++.+..+++...+.+..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~------KlFk~YIelElqL~efDRcRkLYEkfle~~Pe- 469 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKD------KLFKGYIELELQLREFDRCRKLYEKFLEFSPE- 469 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCch------hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-
Confidence 666766554444 467889999999987654 44433 89999999999999999999999999998644
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHH
Q 036731 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKG-VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239 (259)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (259)
+..+|......-...|+.+.|..+|.-..+.. .......|.+.|+.-...|.++.|..+++++++. .+...+|.+..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 78889888888889999999999999988763 2223466888888888999999999999999876 33444565554
Q ss_pred H
Q 036731 240 D 240 (259)
Q Consensus 240 ~ 240 (259)
.
T Consensus 548 ~ 548 (677)
T KOG1915|consen 548 K 548 (677)
T ss_pred H
Confidence 4
No 99
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.71 E-value=2.1e-05 Score=63.34 Aligned_cols=235 Identities=11% Similarity=0.102 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC----------------------ChhHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN----------------------DGNEAEYLF 74 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~ 74 (259)
..|+.|.+-|.+.|.+++|.++|++.... ..+..-|..+.++|+.-. +++-...-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 46899999999999999999999998876 335555666666554321 122233333
Q ss_pred HHHHHcC-----------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCCh
Q 036731 75 IEMMDRG-----------LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143 (259)
Q Consensus 75 ~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (259)
+.+...+ -+.+...|..-+.. ..|+..+-...+.+..+. +.|......-...|..+.+.|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 3333321 11133334333332 345677777777777653 333332222447899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC----------CC-------cHHHHHHH
Q 036731 144 KNARELSQSLTRAGLMPN---VVTYNITIHALCNDEQMDKAHDLFLDMEVKGV----------AP-------NCVIFTTL 203 (259)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------~p-------~~~~~~~l 203 (259)
+.|..+|++..+...+-- ..+|......-.+..+++.|+.+++......- .| +...|..+
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999887543311 34667777777788899999999887653211 11 34556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
++.....|-++....+++++++..+. ++.+.....-.+..+.-++++.++|++
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 77777788999999999999887653 333333344445566666777766654
No 100
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.70 E-value=3.6e-08 Score=48.40 Aligned_cols=33 Identities=36% Similarity=0.604 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINP 49 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 49 (259)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777766665
No 101
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.66 E-value=3e-06 Score=57.09 Aligned_cols=128 Identities=17% Similarity=0.145 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc---hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch--hhHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN---VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV--VTFN 90 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 90 (259)
...|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. ....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34577777777 4889999999999998763 222 233334557788999999999999999987633332 2444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSL 153 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (259)
.|...+...|++++|+..++....... ....+.....++.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~--------~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAF--------KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcch--------HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 577889999999999999977433222 4467888999999999999999999863
No 102
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.64 E-value=2.7e-05 Score=63.85 Aligned_cols=230 Identities=12% Similarity=0.004 Sum_probs=157.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc-CCCCchhhHHHHHHHHHHcC
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNR 100 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 100 (259)
+.--|+..++++.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.+.+...+. |. |......-+..-...+
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~ 561 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFN 561 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcc
Confidence 44556778899999999999988765678889999999999999999999999877654 11 1111000111111122
Q ss_pred CHHHHHHHHHHHH-----------------h----CCC--CCCCc---------------------------------cc
Q 036731 101 KMDEATRLLDLMI-----------------Q----GGV--RPDAF---------------------------------CE 124 (259)
Q Consensus 101 ~~~~a~~~~~~~~-----------------~----~~~--~~~~~---------------------------------~~ 124 (259)
+.++++.....+. . .|. .+... ..
T Consensus 562 ~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 562 DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPG 641 (799)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCC
Confidence 2222222111110 0 000 00000 01
Q ss_pred ------hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHH
Q 036731 125 ------INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198 (259)
Q Consensus 125 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 198 (259)
.-...|......+.+.+..++|...+.+..+.. +.....|......+...|..++|.+.|......+ +-++.
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~ 719 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVP 719 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcH
Confidence 113456667777888889999998888877653 3355667777778888999999999998888662 23456
Q ss_pred HHHHHHHHHHhcCCHHHHHH--HHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 199 IFTTLMPSFIRKNETSKVIE--LLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
...++...+.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|.
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 78889999999998888877 999999886 4588999999999999999999988774
No 103
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.64 E-value=8.5e-07 Score=69.28 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=105.9
Q ss_pred ccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc
Q 036731 8 FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD 85 (259)
Q Consensus 8 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (259)
|.+..+.+......+++.+....+++.+..++.+.+.+ ....-..|..++++.|...|..+.++.++..=...|+-||
T Consensus 58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 55556667888888999999999999999999998876 3333455667999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (259)
..++|.||+.+.+.|++..|.++...|...+...+ ..++...+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~------~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDN------PSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCC------chHHHHHHHHHHHh
Confidence 99999999999999999999999988876655543 26666666666665
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=5.6e-05 Score=54.13 Aligned_cols=190 Identities=12% Similarity=0.060 Sum_probs=140.9
Q ss_pred cCChHHHHHHHHHHhhC---C-CCCchH-hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 036731 29 EGFVDKAKELFLQMKDE---N-INPNVV-TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD 103 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (259)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+.+. ++-+...-..-...+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 45678888998888643 4 445543 4556777778899999999999999876 3333333333333455688999
Q ss_pred HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 036731 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183 (259)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (259)
+|+++++.+.+.+ |+ |..++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-
T Consensus 104 ~A~e~y~~lL~dd--pt-----~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PT-----DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hHHHHHHHHhccC--cc-----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999998765 43 5678877777888888888999888888776 55699999999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCC
Q 036731 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKN---ETSKVIELLRSMDKRNV 228 (259)
Q Consensus 184 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~ 228 (259)
.++++.-.. +.++..+..+.+.+.-.| +.+.+.+++.+..+...
T Consensus 176 ClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 176 CLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999998762 334555666666554443 45678888888887644
No 105
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.1e-05 Score=61.65 Aligned_cols=213 Identities=14% Similarity=0.072 Sum_probs=141.6
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHH
Q 036731 25 GLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104 (259)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 104 (259)
.+.+.|+++....+...+.... .-....|-.-.......++++.|+.+-++..+.... +...+-.-...+...+++++
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHH
Confidence 3456777777777777765431 123333444444445667788888887777765322 44455555566777888888
Q ss_pred HHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----------C----------------
Q 036731 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-----------G---------------- 157 (259)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~---------------- 157 (259)
|.-.|+..... .|. +...|.-|+.+|...|.+.+|..+-++..+. |
T Consensus 353 A~IaFR~Aq~L--ap~-----rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 353 AVIAFRTAQML--APY-----RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred HHHHHHHHHhc--chh-----hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 88777776653 332 5578888888888888877766554443211 1
Q ss_pred -------CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 036731 158 -------LMPN-VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229 (259)
Q Consensus 158 -------~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (259)
+.|+ ....+.+...+...|..+.+..++++.... .||....+.|.+.+...+.+++|.+.|......+
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-- 501 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-- 501 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--
Confidence 1222 223466677788999999999999998876 7899999999999999999999999999988764
Q ss_pred cchHHHHHHHHHHHHhcccCC
Q 036731 230 PYASILSIIVDLLVKNEISLN 250 (259)
Q Consensus 230 ~~~~~~~~l~~~~~~~g~~~~ 250 (259)
|....-..=++-+.+..+..+
T Consensus 502 P~~~~sl~Gl~~lEK~~~~~D 522 (564)
T KOG1174|consen 502 PKSKRTLRGLRLLEKSDDESD 522 (564)
T ss_pred ccchHHHHHHHHHHhccCCCC
Confidence 443333333444555444433
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=5.2e-06 Score=55.21 Aligned_cols=52 Identities=13% Similarity=0.016 Sum_probs=19.8
Q ss_pred HHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036731 60 GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112 (259)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 112 (259)
.+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...+++.
T Consensus 26 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 26 NLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred HHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333322 113333333333444444444444444433
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=4.8e-06 Score=65.87 Aligned_cols=184 Identities=13% Similarity=0.052 Sum_probs=132.2
Q ss_pred HhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc
Q 036731 61 FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140 (259)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (259)
+.+.|++.+|.-.|+........ +...|-.|...-...++-..|+..+++..+. .|+ +..+...|.-.|...
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~-----NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL--DPT-----NLEALMALAVSYTNE 366 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCc-----cHHHHHHHHHHHhhh
Confidence 46789999999999999887433 7889999999999999999999999998875 455 678888888888888
Q ss_pred CChHHHHHHHHHHHHc------------------------------------------CCCCChhhHHHHHHHHHhcCCh
Q 036731 141 GKLKNARELSQSLTRA------------------------------------------GLMPNVVTYNITIHALCNDEQM 178 (259)
Q Consensus 141 ~~~~~a~~~~~~~~~~------------------------------------------~~~~~~~~~~~li~~~~~~~~~ 178 (259)
|.-..|.+.++.-... +..+|..+...|.-.|.-.|++
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 8888888877765432 1123444555555556667777
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccc-hHHHHHHHHHHHHhcccCCcchhh
Q 036731 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY-ASILSIIVDLLVKNEISLNSIPQF 255 (259)
Q Consensus 179 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 255 (259)
++|.+.|+..+... +-|...||.|...++...+.++|...+++.++. .|+ +....-|.-+|...|.+++|.+.|
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 77888777777652 234566777777777777778888888777764 332 333334556677777777776654
No 108
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.63 E-value=7.4e-05 Score=60.39 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
-...|++|.+.|.+.|++++|..+|++....
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3478999999999999999999999987654
No 109
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=7.2e-06 Score=54.54 Aligned_cols=108 Identities=12% Similarity=-0.018 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
+......+...+...|++++|...++.....+ +.+...+..+...+...|++++|...++.....+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 44667788888999999999999999998865 3377788889999999999999999999988764 456778888889
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCccchHHHHH
Q 036731 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSI 237 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (259)
.+...|++++|...++...+. .|+...+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 123 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPEYSE 123 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccchHHH
Confidence 999999999999999998876 355444443
No 110
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.61 E-value=7.7e-06 Score=55.14 Aligned_cols=118 Identities=10% Similarity=0.044 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcC
Q 036731 99 NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV--VTYNITIHALCNDE 176 (259)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~ 176 (259)
.++...+...++.+.+...... ......-.+...+...|++++|...|+........|+. .....+...+...|
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~----ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSP----YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG 99 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence 4455555555555544321110 01223333344455555555555555555554322211 12223344455555
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036731 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222 (259)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (259)
++++|+..++..... ......+......+.+.|++++|...|+.
T Consensus 100 ~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 100 QYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555443322 12223344444555555555555555543
No 111
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.61 E-value=3.8e-05 Score=57.48 Aligned_cols=221 Identities=11% Similarity=0.060 Sum_probs=160.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCC--chHhH------------HHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhH
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINP--NVVTY------------NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (259)
..+.+.|.++.|..=|+...++...- +...+ ...+..+...|+...|+.....+.+.. +-|...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 45678899999999999988763110 11111 223445667799999999999998873 4477778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH----
Q 036731 90 NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY---- 165 (259)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---- 165 (259)
..-..+|...|++..|+.=+....+... + ++.++--+-..+...|+.+.++...++..+. .||...+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~--D-----nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQ--D-----NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccc--c-----chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH
Confidence 8888999999999999887777665432 2 4578888888999999999999999998875 3554322
Q ss_pred HHH---------HHHHHhcCChhHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccc
Q 036731 166 NIT---------IHALCNDEQMDKAHDLFLDMEVKGVAPN-----CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231 (259)
Q Consensus 166 ~~l---------i~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (259)
-.+ +......++|.+++...+...+. .|. ...+..+-.++...+++.+|.+...+.++.. +.|
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~d 340 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDD 340 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chH
Confidence 111 22234567888888888887776 333 2345556677788899999999999998763 335
Q ss_pred hHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 232 ASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 232 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
..++..-..+|.-...+++|+.-|+.
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~ 366 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEK 366 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888888888888888888876653
No 112
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=4.3e-06 Score=65.10 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 036731 20 NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99 (259)
Q Consensus 20 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (259)
..|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++.+..... +.+..........|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 345566677889999999999998873 44 45567888888889999999999998763 33667777777889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036731 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (259)
++++.|+.+.++..+. .|+ +-.+|..|..+|...|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~-----~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPS-----EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--Cch-----hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999875 454 45899999999999999999999998875
No 113
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=5.2e-06 Score=64.64 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=98.7
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHH
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (259)
....|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..+.. |. +......
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~-----d~~LL~~ 239 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQ-----DSELLNL 239 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CC-----CHHHHHH
Confidence 34556677777889999999999998873 44 44557888888888889999998887542 22 4577777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036731 133 LIDGLCKIGKLKNARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAHDLFLDME 189 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (259)
....+.+.++++.|+.+.+++.+. .|+ -.+|..|..+|...|+++.|+..++.+.
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888899999999999999999886 344 4589999999999999999998888764
No 114
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.58 E-value=1.5e-07 Score=46.48 Aligned_cols=33 Identities=42% Similarity=0.847 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (259)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777665
No 115
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.57 E-value=2.1e-06 Score=67.12 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=61.4
Q ss_pred CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc--CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccch
Q 036731 48 NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR--GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125 (259)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (259)
+.+......+++.+....+.+.+..++.+.... ....-..|.+++++.|...|..+.++.++..=...|+.||.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~---- 138 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN---- 138 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh----
Confidence 344444555555555555555555555555443 12222334445555555555555555555555555555543
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
.+++.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 139 --~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 139 --FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred --hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555555555544444444444444444333
No 116
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.56 E-value=1.9e-06 Score=53.50 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCchHhHHHHHHHHhhcC--------ChhHHHHHHHHHHHcCCCCchhhH
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYAN--------DGNEAEYLFIEMMDRGLQSDVVTF 89 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 89 (259)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777778999999999999999999 899999999999887653 344688999999999999999999
Q ss_pred HHHHHHHHH
Q 036731 90 NVIMDELCK 98 (259)
Q Consensus 90 ~~l~~~~~~ 98 (259)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 117
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.56 E-value=1.6e-07 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (259)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666554
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=0.00021 Score=55.98 Aligned_cols=200 Identities=15% Similarity=0.074 Sum_probs=134.1
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (259)
.|+...+...+.+......-..+-.++.+..+. .-...-|.. ...+...|++++|+..++.+... .+-|+..+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHH
Confidence 455666666666554443333333333222221 112222333 33456789999999999998876 23356666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (259)
...+...++.++|.+.++.+... .|+ .......+..++.+.|++.+|..+++...... +-|...|..|.++|
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~-----~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay 418 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPN-----SPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAY 418 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCC-----ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHH
Confidence 88899999999999999998875 343 24778888999999999999999999988774 44888999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CccchHHHHHHHHHH
Q 036731 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN--VMPYASILSIIVDLL 242 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~ 242 (259)
...|+..++.... .+.+...|+++.|...+....+.. ..|+-.-+...+...
T Consensus 419 ~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 419 AELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred HHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 9999877775443 344556788888888887776542 133333444444443
No 119
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=8.3e-05 Score=59.40 Aligned_cols=216 Identities=13% Similarity=0.028 Sum_probs=136.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 036731 20 NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99 (259)
Q Consensus 20 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (259)
-+=++-+...|++++|.+...++...+ +-+...+..-+.+..+.+++++|+.+.+.-... ..+...+..-..+..+.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 344567778899999999999998875 556777888888899999999999665432211 11222222334455688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCh
Q 036731 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC-NDEQM 178 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~ 178 (259)
+..++|+..++ |..+. +..+...-...+.+.|++++|+.+|+.+.+++.. .+..-+.+-+ ..+-.
T Consensus 93 nk~Dealk~~~-----~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAA 158 (652)
T ss_pred ccHHHHHHHHh-----ccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHh
Confidence 99999999887 33333 3357777888999999999999999999887543 2322222211 11111
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHH---HHHHhcCCHHHHHHHHHHHhh-------C------CCccchH-HHHHHHHH
Q 036731 179 DKAHDLFLDMEVKGVAPNCVIFTTLM---PSFIRKNETSKVIELLRSMDK-------R------NVMPYAS-ILSIIVDL 241 (259)
Q Consensus 179 ~~a~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~-------~------~~~~~~~-~~~~l~~~ 241 (259)
..+. +.+... ..| ..+|..+. -.+...|++.+|+++++...+ . ++..... +-..+.-+
T Consensus 159 l~~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 159 LQVQ-LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhHH-HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 1121 222222 233 23444443 345678999999999998721 1 1111111 22345556
Q ss_pred HHHhcccCCcchhhhc
Q 036731 242 LVKNEISLNSIPQFNR 257 (259)
Q Consensus 242 ~~~~g~~~~a~~~~~~ 257 (259)
+-..|+.++|.++|..
T Consensus 234 lQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVD 249 (652)
T ss_pred HHHhcchHHHHHHHHH
Confidence 6788999999987754
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.3e-05 Score=58.83 Aligned_cols=198 Identities=12% Similarity=0.111 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHH-HHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV-IMD 94 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 94 (259)
..-+.+++..+.+..+++.|++++..-.+.. +.+....+.|..+|....++..|-..++++-.. .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3447778888889999999999998877663 337778888899999999999999999998765 444444432 345
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
.+.+.+.+..|+++...|.+. +.. -......-.......+++..+..++++....| +..+.+.......+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L----~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PAL----HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHH----HHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 667788999999999888643 110 11222222233456788888998888876432 44455555555678
Q ss_pred cCChhHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036731 175 DEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (259)
.|+++.|.+-|+...+- |..| ...|+..+.. .+.++++.|.+...+++++|+
T Consensus 157 egqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGI 209 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999998876 4444 5667765544 467899999999999887654
No 121
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=0.00021 Score=54.59 Aligned_cols=199 Identities=9% Similarity=0.034 Sum_probs=141.6
Q ss_pred CHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCCh--hHHHHHHHHHHHcCCCCchhhHHH
Q 036731 15 NTVTYNTIIDGLCKEG-FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAEYLFIEMMDRGLQSDVVTFNV 91 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 91 (259)
+..+|+.--.++...| ++++++..++++.+.. +-+..+|+.....+.+.|+. ++++.+++.+.+...+ +..+|+.
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~ 147 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSH 147 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 3445665556666667 6799999999998764 33566777665555566653 6788999899877544 7889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc---CCh----HHHHHHHHHHHHcCCCCChhh
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI---GKL----KNARELSQSLTRAGLMPNVVT 164 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~ 164 (259)
...++...|+++++++.++++.+.+.. +..+|+.....+.+. |.. +.......+...... -|...
T Consensus 148 R~w~l~~l~~~~eeL~~~~~~I~~d~~-------N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~Sa 219 (320)
T PLN02789 148 RQWVLRTLGGWEDELEYCHQLLEEDVR-------NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESP 219 (320)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHCCC-------chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCH
Confidence 999999999999999999999987654 347777777666554 222 456777767766543 36778
Q ss_pred HHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC------------------CHHHHHHHHHH
Q 036731 165 YNITIHALCND----EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN------------------ETSKVIELLRS 222 (259)
Q Consensus 165 ~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------------------~~~~a~~~~~~ 222 (259)
|+.+...+... +...+|...+.+....+ ..+......|++.|+... ..++|.+++..
T Consensus 220 W~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 298 (320)
T PLN02789 220 WRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSE 298 (320)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHH
Confidence 88888877763 34466888888876653 346677888888887532 23567777777
Q ss_pred Hh
Q 036731 223 MD 224 (259)
Q Consensus 223 ~~ 224 (259)
+.
T Consensus 299 l~ 300 (320)
T PLN02789 299 LE 300 (320)
T ss_pred HH
Confidence 73
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=4.9e-05 Score=59.31 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=116.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHHcCCH
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD-VVTFNVIMDELCKNRKM 102 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 102 (259)
..+...|++++|+..++.+... .+-|...+......+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 3455789999999999998876 2335555566778899999999999999999987 445 66677889999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 036731 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182 (259)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (259)
.+|+.+++...... |+ |+..|..|..+|...|+..++..-..+. +...|+++.|.
T Consensus 391 ~eai~~L~~~~~~~--p~-----dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~ 445 (484)
T COG4783 391 QEAIRILNRYLFND--PE-----DPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAI 445 (484)
T ss_pred HHHHHHHHHHhhcC--CC-----CchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHH
Confidence 99999999887653 32 5699999999999999998887766543 45568888998
Q ss_pred HHHHHHHhcCCCCcHHHH
Q 036731 183 DLFLDMEVKGVAPNCVIF 200 (259)
Q Consensus 183 ~~~~~~~~~~~~p~~~~~ 200 (259)
..+....+. ++++..+|
T Consensus 446 ~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 446 IFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHHHHh-ccCCcHHH
Confidence 888887766 24444443
No 123
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.49 E-value=4.5e-05 Score=61.45 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=80.4
Q ss_pred cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 036731 29 EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 108 (259)
.|+-++|.+..+...+.. ..+.+.|..+.-.+....++++|++.|......+.. |...|.-+--.-++.++++.....
T Consensus 54 lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHH
Confidence 334444444444333322 113334444444444444444444444444433211 333333333333344444444444
Q ss_pred HHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHH------hcCChhHH
Q 036731 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALC------NDEQMDKA 181 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~------~~~~~~~a 181 (259)
..++.+.... ....|..+..++--.|++..|..+.++..+.. -.|+...+......+. ..|..+.|
T Consensus 132 r~~LLql~~~-------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 132 RNQLLQLRPS-------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred HHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 3333332111 22455555555555566666666666555443 1344444433333221 23444444
Q ss_pred HHHHHHHHhcCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 182 HDLFLDMEVKGVAPNCVIF-TTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 182 ~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
++.+..-... ..|-..+ ..-...+.+.+++++|..++..++..
T Consensus 205 le~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 205 LEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 4444333222 1122222 12234455666777777777776665
No 124
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00012 Score=64.53 Aligned_cols=238 Identities=10% Similarity=0.010 Sum_probs=152.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CchHhHHHHHHHHhhcCChhHHHHHHHHHHHc----CCC--C-c
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDE----NIN-PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR----GLQ--S-D 85 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 85 (259)
..+.+...+...|++++|...+++.... |.. ....++..+...+...|+++.|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4566667778899999999999887643 211 11234455667788899999999998876542 211 1 2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhh
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-PNVVT 164 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 164 (259)
...+..+...+...|++++|...+++.......... ......+..+...+...|+++.|...+.+....... .....
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP--QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 233445566677889999999998887543211100 113355666777888999999999999887543111 01111
Q ss_pred H-----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCcc-c
Q 036731 165 Y-----NITIHALCNDEQMDKAHDLFLDMEVKGVAPNC---VIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMP-Y 231 (259)
Q Consensus 165 ~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 231 (259)
+ ...+..+...|+.+.|..++............ ..+..+..++...|++++|...+.+.... |..+ .
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1 11224445678899999888775543211111 11345667788899999999999887642 3222 2
Q ss_pred hHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 232 ASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 232 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
..+...+..++.+.|+.++|...+.+
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566677788899999888877654
No 125
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.48 E-value=7.1e-06 Score=51.00 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHhcCCCCcHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGL-MPNVVTYNITIHALCNDE--------QMDKAHDLFLDMEVKGVAPNCV 198 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~ 198 (259)
.+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-..+.+|++|...+++|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3445566666677888888888888888888 788888888888776543 2345667777777777777777
Q ss_pred HHHHHHHHHHh
Q 036731 199 IFTTLMPSFIR 209 (259)
Q Consensus 199 ~~~~l~~~~~~ 209 (259)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00018 Score=52.05 Aligned_cols=173 Identities=15% Similarity=0.056 Sum_probs=121.9
Q ss_pred HHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 036731 37 ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116 (259)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 116 (259)
++.+.+.......+......-...|+..+++++|++...... +......=+..+.+..+.+-|.+.+++|.+..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 444444444333343333444457889999999999886521 33334444556677788999999999998753
Q ss_pred CCCCCccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036731 117 VRPDAFCEINIVAYGCLIDGLCK----IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 192 (259)
- -.+.+-|..++.+ .+.+..|.-+|++|.++ .+|+..+.+-...++...|++++|..+++......
T Consensus 168 e---------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 168 E---------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred h---------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 2 2566666666554 45789999999999875 46788899999999999999999999999999874
Q ss_pred CCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhC
Q 036731 193 VAPNCVIFTTLMPSFIRKNETS-KVIELLRSMDKR 226 (259)
Q Consensus 193 ~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~ 226 (259)
.-++.+...++.+-...|... -..+.+.++...
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 335677777776666666654 445666666654
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=3.2e-05 Score=66.00 Aligned_cols=201 Identities=11% Similarity=0.088 Sum_probs=136.2
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-----
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD-VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF----- 122 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----- 122 (259)
.+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+.+..+ .+...-......
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 35678899999999999999999999977765 333 34444444466677766665554 222211100000
Q ss_pred -------cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036731 123 -------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195 (259)
Q Consensus 123 -------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 195 (259)
...+..++..+..+|-+.|+.+++..+|+++.+.. +-|..+.|.+...|... ++++|.+++.+....-+
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i-- 180 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI-- 180 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--
Confidence 00123577788888999999999999999999987 34788999999999999 99999999998876521
Q ss_pred cHHHHHHHHHH---H--HhcCCHHHHHHHHHHHhhC-CCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 196 NCVIFTTLMPS---F--IRKNETSKVIELLRSMDKR-NVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 196 ~~~~~~~l~~~---~--~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+..-|+.+... + ....+.+.-.++.+.+... +..--..++..+-..|...+++++++.+++.
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 22222222221 1 2234455556666665543 4444566777788888899999999988875
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.42 E-value=0.00051 Score=54.66 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
-|+.+|+.||.-+... .++++.+.++++... .+-....|..-|..-...++++.+..+|.+....
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3889999999887666 899999999999865 4556778888888888889999988888876644
No 129
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.41 E-value=0.0001 Score=55.27 Aligned_cols=243 Identities=9% Similarity=0.030 Sum_probs=161.5
Q ss_pred CCcccccccccCCHHHHHHHH---HHHHhcCChHHHHHHHHHHhhCCCCCchHhH-HHHHHHHhhcCChhHHHHHHHHHH
Q 036731 3 NGNREFGVVCKPNTVTYNTII---DGLCKEGFVDKAKELFLQMKDENINPNVVTY-NSLIHGFCYANDGNEAEYLFIEMM 78 (259)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~ 78 (259)
||..-|...++.|+..|-++. ..|...|+..-|+.=+.+..+. +||-..- ..-...+.+.|.++.|..=|+...
T Consensus 56 DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 56 DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVL 133 (504)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence 344444555666666666654 4566677777777666666654 5553221 223345678999999999999988
Q ss_pred HcCCCCc------------hhhH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChH
Q 036731 79 DRGLQSD------------VVTF--NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144 (259)
Q Consensus 79 ~~~~~~~------------~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (259)
++....+ ...| ...+..+...|+...|+.....+.+.... |...+..-..+|...|++.
T Consensus 134 ~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-------da~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 134 QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-------DASLRQARAKCYIAEGEPK 206 (504)
T ss_pred hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-------hhHHHHHHHHHHHhcCcHH
Confidence 7643211 1112 23345566778999999999998875433 6688888999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHH----HHHH---------HHHHHhcC
Q 036731 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI----FTTL---------MPSFIRKN 211 (259)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~~l---------~~~~~~~~ 211 (259)
.|+.=++...+..- -++.++-.+-..+...|+.+.++...++..+. .||... |..| +......+
T Consensus 207 ~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~ 283 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEK 283 (504)
T ss_pred HHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99988888776533 25566666777888899999988888887765 455432 2211 12334567
Q ss_pred CHHHHHHHHHHHhhCCCc---cchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 212 ETSKVIELLRSMDKRNVM---PYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+|.++.+.-+...+.... .....+..+-.++...|++.+|+...++
T Consensus 284 ~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 777777777776665433 1344566777788888888888776543
No 130
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.40 E-value=3.9e-07 Score=43.54 Aligned_cols=29 Identities=41% Similarity=0.817 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDEN 46 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 46 (259)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 131
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=2e-05 Score=59.17 Aligned_cols=190 Identities=14% Similarity=0.135 Sum_probs=115.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH-----HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 036731 56 SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI-----MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130 (259)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (259)
.|+-.|.++++..+|..+.+++.-. .|-......+ ..-........-|.+.|+-.-..+..-+ ++.--
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD-----TIpGR 362 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD-----TIPGR 362 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc-----cccch
Confidence 3445678889999998887665422 2222222222 2222223345667777776666665554 33445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHH-HHHHHHHHh
Q 036731 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF-TTLMPSFIR 209 (259)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~ 209 (259)
.++..++.-..++++++..++.+...=..-|...+ .+.++.+..|++.+|+++|-.+....++ |..+| ..|.++|.+
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh
Confidence 56666777777788888888887765333344333 4778888888888998888777655544 34444 445578888
Q ss_pred cCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.+.++.|+.++-.+...+ ..-.....+..-|.+.+.+--|.+.|.
T Consensus 441 nkkP~lAW~~~lk~~t~~--e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPS--ERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred cCCchHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888887775543221 122234445566777777644444443
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.00084 Score=56.47 Aligned_cols=200 Identities=12% Similarity=0.092 Sum_probs=136.6
Q ss_pred HHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 19 YNTIIDG--LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 19 ~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
|..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++.... .|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 3344444 35789999999888887766544 8888999999999999999999999998876 56677778888899
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcC-CCCChhhH
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK----------LKNARELSQSLTRAG-LMPNVVTY 165 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~-~~~~~~~~ 165 (259)
.+.+.+.+-.++--++.+. .|. ....+.++++.+.+.-. ..-|.+.++.+.+.+ -.-+..-.
T Consensus 121 vR~~~yk~qQkaa~~LyK~--~pk-----~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN--FPK-----RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCc-----ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 9988887655554444432 222 33677777777665431 234556666666554 21122222
Q ss_pred HHHHHHHHhcCChhHHHHHH-HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036731 166 NITIHALCNDEQMDKAHDLF-LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (259)
..-...+...|++++|++++ ....+.-...+...-+.-+..+...+++.+..++..++..+|.
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 23334456788899999999 4444443333444455667788889999999999999888763
No 133
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.35 E-value=0.00046 Score=61.02 Aligned_cols=232 Identities=9% Similarity=-0.046 Sum_probs=147.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCc----hHhHHHHHHHHhhcCChhHHHHHHHHHHHc----CCC-CchhhHHHHH
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPN----VVTYNSLIHGFCYANDGNEAEYLFIEMMDR----GLQ-SDVVTFNVIM 93 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~ 93 (259)
...+...|+++.|...+++....-...+ ....+.+...+...|+++.|...+++.... |.. +...+...+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 3456689999999999998876311111 123455666778899999999999887643 111 1123455667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC----CCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCC--ChhhH
Q 036731 94 DELCKNRKMDEATRLLDLMIQG----GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG--LMP--NVVTY 165 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~ 165 (259)
..+...|+++.|...+++.... +.. .. ......+..+...+...|++++|...+++..... ..+ ....+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~--~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLE-QL--PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccc-cc--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 7888999999999998876542 211 10 0122345566677888899999999998875431 112 23344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcHH--HH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCccc---hHHHH
Q 036731 166 NITIHALCNDEQMDKAHDLFLDMEVKG--VAPNCV--IF--TTLMPSFIRKNETSKVIELLRSMDKRNVMPY---ASILS 236 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 236 (259)
..+...+...|+++.|...+....... ...... .. ...+..+...|+.+.|.+++........... .....
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 445667788999999999998875431 111111 10 1122445568999999999877654221111 11234
Q ss_pred HHHHHHHHhcccCCcchhhhc
Q 036731 237 IIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 237 ~l~~~~~~~g~~~~a~~~~~~ 257 (259)
.+..++...|+.++|...+.+
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 577778888999888887764
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.00065 Score=57.08 Aligned_cols=216 Identities=14% Similarity=0.102 Sum_probs=143.3
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHH--HhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 036731 26 LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHG--FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD 103 (259)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (259)
....+++.+|.+....+.+. .||. .|...+.+ ..+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34678899999999888776 3554 34444444 46899999999999888776655 8899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------
Q 036731 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ------ 177 (259)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------ 177 (259)
+|..+|++..+.. | +......+..+|.+.+++.+-.++--++.+. .+-+...+-++++.....-.
T Consensus 95 ~~~~~Ye~~~~~~--P------~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 95 EAVHLYERANQKY--P------SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHHHHHHHHHhhC--C------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccc
Confidence 9999999998753 3 2367777888888888877655555555443 22345555566665554221
Q ss_pred ----hhHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHH-HHhhCCCccchHHHHHHHHHHHHhcccCCc
Q 036731 178 ----MDKAHDLFLDMEVKG-VAPNCVIFTTLMPSFIRKNETSKVIELLR-SMDKRNVMPYASILSIIVDLLVKNEISLNS 251 (259)
Q Consensus 178 ----~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 251 (259)
..-|.+.++.+.+.+ -.-+..-.......+...|++++|..++. ...+.-..-+...-+.-++.+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 223555666666553 11122222233345567899999999994 344443333455555667777777777655
Q ss_pred chh
Q 036731 252 IPQ 254 (259)
Q Consensus 252 ~~~ 254 (259)
.++
T Consensus 246 ~~l 248 (932)
T KOG2053|consen 246 FEL 248 (932)
T ss_pred HHH
Confidence 444
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=3.2e-05 Score=64.27 Aligned_cols=209 Identities=12% Similarity=0.040 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-C--------CCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-N--------INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD 85 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (259)
+...|..+...|.+..+.+-|.-.+-.|... | -.|+ .+-..........|-+++|+.+|.+-.+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 4456777777777777766666555554321 0 0111 22222223335667777777777666543
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHH----------H
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT----------R 155 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~ 155 (259)
..|=..|...|.+++|.++-+.=....+. .||......+-..++.+.|++.|++.. .
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---------~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHLR---------NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceehh---------hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 33455677788888888776543222222 678788888888888888888876531 1
Q ss_pred cC---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 156 AG---------LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 156 ~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
.. -.-|...|.....-+...|+.+.|+.+|...++ |-.+++..+-.|+.++|.++-++-.
T Consensus 897 e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg-- 965 (1416)
T KOG3617|consen 897 EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG-- 965 (1416)
T ss_pred hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc--
Confidence 10 122455666666667778888888888876553 3345555555666766666654332
Q ss_pred CCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 227 NVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
|......+.+.|...|++.+|+..|.+
T Consensus 966 ----d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 966 ----DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred ----cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 334555566667777777666666643
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.33 E-value=7.2e-05 Score=48.34 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 130 YGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
+..+..++...|+.++|...++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33333334444444444444444433
No 137
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.32 E-value=0.00037 Score=56.46 Aligned_cols=227 Identities=14% Similarity=0.073 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (259)
|..++..| ..+++...+++.+...+. .+-...|.....-.+...|+-++|......-....+. +.+.|+.+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 34444443 345566666666555552 3333444444444455566666666666555543322 45556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036731 99 NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178 (259)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (259)
..++++|++.|...... .|+ |...+.-+.-.-.+.|+++........+.+... -....|..+..+..-.|+.
T Consensus 88 dK~Y~eaiKcy~nAl~~--~~d-----N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKI--EKD-----NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred hhhHHHHHHHHHHHHhc--CCC-----cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH
Confidence 66666666666665553 232 445555555555566666666666666555421 1344555556666666666
Q ss_pred hHHHHHHHHHHhcC-CCCcHHHHHHHH------HHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCc
Q 036731 179 DKAHDLFLDMEVKG-VAPNCVIFTTLM------PSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251 (259)
Q Consensus 179 ~~a~~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 251 (259)
..|..+++...+.. -.|+...+.... ......|.+++|.+.+..-... +......-..-...+.+.|+.++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 66666666665542 234444443322 1233455555555555443322 111222233344455666666666
Q ss_pred chhhhc
Q 036731 252 IPQFNR 257 (259)
Q Consensus 252 ~~~~~~ 257 (259)
..+|..
T Consensus 239 ~~~y~~ 244 (700)
T KOG1156|consen 239 VKVYRR 244 (700)
T ss_pred HHHHHH
Confidence 665543
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00046 Score=49.63 Aligned_cols=176 Identities=14% Similarity=0.073 Sum_probs=132.3
Q ss_pred hcCChhHHHHHHHHHHH---cC-CCCchhh-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHH
Q 036731 63 YANDGNEAEYLFIEMMD---RG-LQSDVVT-FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137 (259)
Q Consensus 63 ~~~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (259)
...+.++..+++.++.. +| ..++..+ |..++-+....|+.+.|...++++...- |.+ ..+--.-...+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S-----~RV~~lkam~l 96 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGS-----KRVGKLKAMLL 96 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCC-----hhHHHHHHHHH
Confidence 34567888888887763 34 4455443 4456667778899999999999988753 432 23433334445
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 036731 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217 (259)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 217 (259)
-..|++++|.++++.+.+.+ +.|..++-.-+...-..|+..+|++-+.+..+. +..|...|.-+...|...|++++|.
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 66799999999999999886 446777777777777888888999988888876 6789999999999999999999999
Q ss_pred HHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 218 ELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
-.++++.-.. +.++..+..+.+.+.-.|..
T Consensus 175 fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 175 FCLEELLLIQ-PFNPLYFQRLAEVLYTQGGA 204 (289)
T ss_pred HHHHHHHHcC-CCcHHHHHHHHHHHHHHhhH
Confidence 9999988653 33566677777776655543
No 139
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.31 E-value=6e-05 Score=56.69 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=65.6
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHH
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (259)
+|..+++...+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+...+. .|. +...|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~-----~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPS-----DPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT------HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCC-----CHHHHH
Confidence 45555566656666666666666665331 2234444444444222 34444466666655543 111 345556
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNV---VTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
..++.+...++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666665543 22111 25555565555666666666666555554
No 140
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0011 Score=53.22 Aligned_cols=228 Identities=13% Similarity=0.035 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC---------------------------CchHhHHHHHH---HHhhc
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN---------------------------PNVVTYNSLIH---GFCYA 64 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~~li~---~~~~~ 64 (259)
|..+...-.+.+-+.|++++|.++|+.+.+++.. ....+|..+.+ .+...
T Consensus 109 ~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 109 DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN 188 (652)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc
Confidence 3345666667788999999999999998554322 01224444433 34567
Q ss_pred CChhHHHHHHHHHHHcC-------CCCch------h-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc--------
Q 036731 65 NDGNEAEYLFIEMMDRG-------LQSDV------V-TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-------- 122 (259)
Q Consensus 65 ~~~~~a~~~~~~~~~~~-------~~~~~------~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------- 122 (259)
|++.+|+++++...+.+ -.-+. . .-.-+.-.+...|+-++|..++..+.+....-.+.
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 99999999998883221 01011 1 11224455677899999999999888765432222
Q ss_pred --------------------------------------------------------------------------------
Q 036731 123 -------------------------------------------------------------------------------- 122 (259)
Q Consensus 123 -------------------------------------------------------------------------------- 122 (259)
T Consensus 269 va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~ 348 (652)
T KOG2376|consen 269 VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQE 348 (652)
T ss_pred hhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHH
Confidence
Q ss_pred ---------------------cch--hHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHcCCCCChhhHHHHHHH
Q 036731 123 ---------------------CEI--NIVAYGCLIDGLCKIGKLKNARELSQ--------SLTRAGLMPNVVTYNITIHA 171 (259)
Q Consensus 123 ---------------------~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~ 171 (259)
..| ...+.-.++......|+++.|..++. .+.+.+..| .+...+...
T Consensus 349 ~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l 426 (652)
T KOG2376|consen 349 ATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVAL 426 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHH
Confidence 111 22344455555666777777777777 444443333 344455555
Q ss_pred HHhcCChhHHHHHHHHHHhc--CCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHh
Q 036731 172 LCNDEQMDKAHDLFLDMEVK--GVAPNC----VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245 (259)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (259)
+.+.++-+.|-.++.+...- .-.+.. .++.-+...-.+.|+.++|..+++++.+.+ +++..+...++.+|++.
T Consensus 427 ~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 427 YYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 66666655555555554321 001111 223333344456788888888888888764 56777888888877764
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.29 E-value=0.00059 Score=50.16 Aligned_cols=176 Identities=11% Similarity=0.061 Sum_probs=92.1
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 036731 54 YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT---FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130 (259)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (259)
+-.....+...|++++|.+.|+.+......+ ... .-.+..++.+.++++.|...+++..+...... ...+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~------~~~~ 107 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP------NIDY 107 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC------chHH
Confidence 3334445567889999999999888763332 222 23466778889999999999988886532221 1333
Q ss_pred HHHHHHHHh--c---------------CC---hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036731 131 GCLIDGLCK--I---------------GK---LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 131 ~~l~~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (259)
...+.+.+. . .+ ..+|+..|+.+.+. -|++. -..+|..-+..+..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~ 172 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHH
Confidence 333333221 1 12 23455666666654 23332 12233333322222
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCccchHHHHHHHHHHHHhcccCCcchhh
Q 036731 191 KGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR--NVMPYASILSIIVDLLVKNEISLNSIPQF 255 (259)
Q Consensus 191 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 255 (259)
. . ...--.+.+.|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+.
T Consensus 173 ~---l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 173 R---L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred H---H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 1 0 011113345555566666666666665543 22223444555556666666665555443
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.29 E-value=3.7e-05 Score=47.12 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (259)
+|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 45667788889999999999999998763 3344678888889999999999999999988764 334567888889999
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 036731 98 KNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~ 115 (259)
..|+++.|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887653
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.28 E-value=6.1e-05 Score=48.69 Aligned_cols=100 Identities=17% Similarity=-0.005 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLM--PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG--VAPNCVIFTTL 203 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l 203 (259)
.++..+...+.+.|++++|...++.+...... .....+..+..++...|+++.|...++.+.... .......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 56778888899999999999999999875321 113466678899999999999999999998752 11124567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 204 MPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
..++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888999999999999999998874
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.27 E-value=5.4e-06 Score=50.14 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCCh
Q 036731 65 NDGNEAEYLFIEMMDRGLQ-SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143 (259)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (259)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+. .+. +......+..++.+.|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~-----~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPS-----NPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHC-----HHHHHHHHHHHHHHTT-H
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCC-----CHHHHHHHHHHHHHhCCH
Confidence 4555555555555554321 1333344455555566666666555554 111 111 223333445555556666
Q ss_pred HHHHHHHHH
Q 036731 144 KNARELSQS 152 (259)
Q Consensus 144 ~~a~~~~~~ 152 (259)
++|+.++++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666555543
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.26 E-value=1.4e-06 Score=41.53 Aligned_cols=29 Identities=34% Similarity=0.762 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAG 157 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (259)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555566666666666666665555544
No 146
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.25 E-value=0.0006 Score=56.38 Aligned_cols=210 Identities=10% Similarity=0.032 Sum_probs=148.5
Q ss_pred ccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCC-chhhHH
Q 036731 12 CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS-DVVTFN 90 (259)
Q Consensus 12 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 90 (259)
++.|...|..+--+....|+++.+-+.|++...- .--..+.|+.+-..+...|.-..|..+++.-......| +...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4568889999999999999999999999988754 23356788999999999999999999998776553334 344444
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHcCC
Q 036731 91 VIMDELCK-NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG-----------KLKNARELSQSLTRAGL 158 (259)
Q Consensus 91 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~ 158 (259)
..-..|.+ .+..++++.+-.++........ .......|..+.-+|...- ...++.+.+++..+.+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444543 5677777777776665211100 0113466666666665322 25677788888877653
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
. |..+.-.+.--|...++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|..+.+...+
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3 33333333344667789999999999999886677889999999999999999999999987654
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=5e-05 Score=46.52 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 208 (259)
++..+...+...|++++|...+++..+... .+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 355677788888999999999998877632 244667778888888899999999998887763 334467778888888
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 036731 209 RKNETSKVIELLRSMDKR 226 (259)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~ 226 (259)
..|+++.|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 889999999988887654
No 148
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.25 E-value=2.3e-05 Score=58.95 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN-DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 206 (259)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578899999999999999999999998553 2245555555555333 56777799999998876 56677888999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCccc---hHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 207 FIRKNETSKVIELLRSMDKRNVMPY---ASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
+...|+.+.|..+|++.... +.+. ...|...++.=.+.|+.+.+.++.+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999998865 3322 358889998888999888777776654
No 149
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.25 E-value=1.6e-05 Score=55.73 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=78.8
Q ss_pred ccCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhc----------------CChhHH
Q 036731 12 CKPNTVTYNTIIDGLCK-----EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA----------------NDGNEA 70 (259)
Q Consensus 12 ~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a 70 (259)
-..|-.+|..++..+.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 46788899999999875 478888889999999999999999999999887542 234669
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHcCCH
Q 036731 71 EYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102 (259)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (259)
++++++|...|+-||..++..+++.+++.+..
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999999887764
No 150
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.0014 Score=52.08 Aligned_cols=204 Identities=9% Similarity=0.014 Sum_probs=141.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH------
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI------ 92 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 92 (259)
...+..+..+..+++.|++-+....... -+..-++....+|...|.+......-....+.|.. ...-|+.+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 5567777888888999999988887764 35555666777888888888877777776666533 22233333
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHhCCCCCCCc------------------cchh-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 036731 93 -MDELCKNRKMDEATRLLDLMIQGGVRPDAF------------------CEIN-IVAYGCLIDGLCKIGKLKNARELSQS 152 (259)
Q Consensus 93 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (259)
..+|.+.++++.++..|.+.......|+.. ..|. ..-.-.-...+.+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 335556677888888888766544444321 1111 11122225566788999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
+.+.. +-|...|....-+|.+.|.+..|+.=.+...+.. ++....|..=..++....++++|.+.|++.++.+
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98886 3478899999999999999999988877777662 2333445555556666788999999999888764
No 151
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00013 Score=55.03 Aligned_cols=196 Identities=12% Similarity=0.092 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHH-----hhcCChhHHHHHHHHHHHcCCCCchh-hHHH
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF-----CYANDGNEAEYLFIEMMDRGLQSDVV-TFNV 91 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 91 (259)
+--.|+--|.+.+++.+|..+..++.- ..|-......+..+. .......-|.+.|+-.-+++..-|.. --.+
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 334456667889999999988877642 123332222222211 11122445666665554444333322 2233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH-HHH
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI-TIH 170 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~ 170 (259)
+..++.-..++++.+-.+..+...-...+ ..--.+..+++..|++.+|+++|-.+....++ |..+|.+ +.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD-------~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LAr 436 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDD-------DFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLAR 436 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcc-------hhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHH
Confidence 45555556677888877777765433221 33346778888888888898888777655555 4555544 457
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT-TLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
+|.+.+.++.|++++-.+... .+..+.. .+..-|.+.+.+--|.+.|+.+...
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 778888888888777554422 2333333 3345677777777777777776654
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.23 E-value=0.00019 Score=54.21 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=112.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHH
Q 036731 54 YNSLIHGFCYANDGNEAEYLFIEMMDR----GLQS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128 (259)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
|......|...+++++|.+.|.+..+. +-+. -...|.....+|.+. ++++|...+++....-..... ...-..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-~~~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR-FSQAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-HHHHHH
Confidence 444445555666666666666554321 1111 122333333444333 666666666655421111000 011235
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CCcH
Q 036731 129 AYGCLIDGLCKI-GKLKNARELSQSLTRA----GLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV-----APNC 197 (259)
Q Consensus 129 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~ 197 (259)
.+..+...|... |++++|...|++..+. |.. --..++..+...+.+.|++++|.++|++...... +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 666777777777 8999999999887543 211 0133567778889999999999999999876422 2222
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--Ccc--chHHHHHHHHHHHHh--cccCCcchhhhcc
Q 036731 198 V-IFTTLMPSFIRKNETSKVIELLRSMDKRN--VMP--YASILSIIVDLLVKN--EISLNSIPQFNRQ 258 (259)
Q Consensus 198 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 258 (259)
. .|-..+-++...|++..|.+.+++..... +.. .......|+.++-.. ..+++++.-|+++
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2 23334446677899999999999987542 222 345666777776543 2335566666554
No 153
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00033 Score=59.79 Aligned_cols=198 Identities=12% Similarity=0.111 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
..|..+..+-.+.|.+.+|++-|-+. -|+..|.-++..+.+.|.+++-.+++...++..-+|... +.|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 34666666666666666665555332 255566666666667777776666665555554444333 3466666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (259)
++.+++.+.++++. .| +..-...+.+-|...+.++.|.-+|.. ...|..|...++..|
T Consensus 1177 Akt~rl~elE~fi~-------gp------N~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GP------NVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLG 1234 (1666)
T ss_pred HHhchHHHHHHHhc-------CC------CchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHH
Confidence 66666555444331 11 223333444444444444444444432 222344444444444
Q ss_pred ChhHHHHHHHH------------------------HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccch
Q 036731 177 QMDKAHDLFLD------------------------MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYA 232 (259)
Q Consensus 177 ~~~~a~~~~~~------------------------~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 232 (259)
++..|.+.-++ |....+-....-..-++..|...|-+++...+++...... ....
T Consensus 1235 eyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHM 1313 (1666)
T KOG0985|consen 1235 EYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHM 1313 (1666)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHH
Confidence 44444333222 1112222334445556666666777777666666544221 1234
Q ss_pred HHHHHHHHHHHHh
Q 036731 233 SILSIIVDLLVKN 245 (259)
Q Consensus 233 ~~~~~l~~~~~~~ 245 (259)
..|+-+.-.|++-
T Consensus 1314 gmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1314 GMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHHhc
Confidence 5566666556553
No 154
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.20 E-value=0.0018 Score=51.72 Aligned_cols=186 Identities=9% Similarity=0.102 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhc---CChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 036731 32 VDKAKELFLQMKDENINPNVVTYNSLIHGFCYA---NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108 (259)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 108 (259)
.+++..+++.....-...+..+|..+...--.. +..+.....++++...-..--..+|..+|+.-.+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 345555565554432222333333333221111 13566777777776543222344677888888888899999999
Q ss_pred HHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHH
Q 036731 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV-TYNITIHALCNDEQMDKAHDLFLD 187 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~ 187 (259)
|.+..+.+..+. ++.+.++++..||. ++.+-|.++|+--.+. -+|.. --...+.-+...++-..+..+|++
T Consensus 389 F~kaR~~~r~~h-----hVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 389 FKKAREDKRTRH-----HVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHhhccCCcc-----hhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 999998877763 56888888888775 6788999999886554 23433 345567777888999999999999
Q ss_pred HHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 188 MEVKGVAPN--CVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 188 ~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
....++.|+ ...|..+++.-+.-|+...+.++-+++..
T Consensus 461 ~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 461 VLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 998866554 47899999999999999999998887654
No 155
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.18 E-value=0.00033 Score=57.94 Aligned_cols=106 Identities=10% Similarity=0.079 Sum_probs=46.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 036731 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215 (259)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 215 (259)
+.....+|.+|+.+++.+.+... -..-|..+...|...|+++.|.++|-+. ..++-.|..|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 33344455555555555444321 2223444445555555555555554321 123333445555555555
Q ss_pred HHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 216 VIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
|.++-.+.. |.......|..-.+-+-++|++.+|.++
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 554443332 2222333343333444444444444433
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.18 E-value=0.00015 Score=50.19 Aligned_cols=114 Identities=12% Similarity=-0.020 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHh-hCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCC--chhhHHHHHHHHHHcCCHHHHHHH
Q 036731 32 VDKAKELFLQMK-DENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS--DVVTFNVIMDELCKNRKMDEATRL 108 (259)
Q Consensus 32 ~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 108 (259)
+..+...+..+. ..+..-....|..+...+...|++++|+..|+........+ ...++..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444443 22222345667777888888999999999999987664332 235788889999999999999999
Q ss_pred HHHHHhCCCCCCCccchhHHHHHHHHHHHH-------hcCChHHHHHHHHH
Q 036731 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLC-------KIGKLKNARELSQS 152 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~ 152 (259)
+++.... .|. ...++..+...+. ..|+++.|...+++
T Consensus 95 ~~~Al~~--~~~-----~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALER--NPF-----LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHh--CcC-----cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9988865 333 2355666666666 56666655444443
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.17 E-value=0.00039 Score=48.37 Aligned_cols=90 Identities=12% Similarity=-0.013 Sum_probs=68.0
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHH
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD--VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
...+..+...+...|++++|...|++.......+. ...+..+..++.+.|++++|...+.+.... .|+ +..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-----~~~ 107 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPK-----QPS 107 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc-----cHH
Confidence 44567777888889999999999998886543332 357788889999999999999999988874 333 446
Q ss_pred HHHHHHHHHHhcCChHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNAR 147 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~ 147 (259)
.+..+..++...|+...+.
T Consensus 108 ~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHHHcCChHhHh
Confidence 7777778888877754444
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.17 E-value=0.00011 Score=50.92 Aligned_cols=67 Identities=10% Similarity=-0.129 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
...|..+...+...|++++|+..|++.......+.. ...++..+..++...|++++|...++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~----~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD----RSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445566666666777777777777776654322111 2346667777777777777777777776654
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.16 E-value=0.00056 Score=51.69 Aligned_cols=206 Identities=10% Similarity=0.068 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHH----cCCCCc-
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDE----NINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMD----RGLQSD- 85 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~- 85 (259)
...|......|...|++++|.+.|.+.... +-+. -...|.....+|. ..++++|...+++..+ .| .|+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 456888888999999999999999887432 2111 1234455555554 4499999999988764 33 222
Q ss_pred -hhhHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----
Q 036731 86 -VVTFNVIMDELCKN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM---- 159 (259)
Q Consensus 86 -~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 159 (259)
...+..+...|-.. |+++.|++.|++..+.-...+. ...-...+..+...+.+.|++++|..+|++.......
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 34677788888888 9999999999887642111110 1113467788889999999999999999998765322
Q ss_pred -CChh-hHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCc--HHHHHHHHHHHHh--cCCHHHHHHHHHHHh
Q 036731 160 -PNVV-TYNITIHALCNDEQMDKAHDLFLDMEVK--GVAPN--CVIFTTLMPSFIR--KNETSKVIELLRSMD 224 (259)
Q Consensus 160 -~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 224 (259)
++.. .|-..+-++...|++..|...+++.... ++..+ ......|+.++-. ...++.+..-|+.+.
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1121 2333444667789999999999998755 23223 3456667777643 233455555554443
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=7.3e-06 Score=49.54 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=61.0
Q ss_pred cCChHHHHHHHHHHhhCCC-CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHH
Q 036731 29 EGFVDKAKELFLQMKDENI-NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR 107 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 107 (259)
.|+++.|+.+++++.+... .++...+..+..++.+.|++++|..+++. .+.+.. +....-.+..+|...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 6889999999999988732 12455566689999999999999999988 333222 33444456889999999999999
Q ss_pred HHHH
Q 036731 108 LLDL 111 (259)
Q Consensus 108 ~~~~ 111 (259)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.15 E-value=0.00042 Score=48.16 Aligned_cols=92 Identities=8% Similarity=-0.091 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (259)
...+..+...+...|++++|...|++..+....+.. ....+..+..++.+.|++++|...+++....... +...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND----RSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 445667777788888999998888888765333211 2357788888888888888888888888775322 44555
Q ss_pred HHHHHHHHhcCChhHHH
Q 036731 166 NITIHALCNDEQMDKAH 182 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~ 182 (259)
..+...+...|+...+.
T Consensus 110 ~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHcCChHhHh
Confidence 66666666666654443
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.14 E-value=0.00014 Score=48.69 Aligned_cols=98 Identities=11% Similarity=-0.083 Sum_probs=80.8
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (259)
......+...+...|++++|..+|+-+....+. +..-|-.|.-+|-..|++++|+..|......+ |+ ++..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~d-----dp~~~ 106 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--ID-----APQAP 106 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----CchHH
Confidence 344555566677899999999999988876433 66777889999999999999999999988765 33 56899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 131 GCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
..+..++...|+.+.|.+.|+.....
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987764
No 163
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=8.9e-05 Score=54.52 Aligned_cols=196 Identities=8% Similarity=0.045 Sum_probs=133.8
Q ss_pred CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccch
Q 036731 46 NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125 (259)
Q Consensus 46 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (259)
|+....--+.+.+....+..+++.|++++....+...+ +......|..+|....++..|-..++++...- |.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~----- 76 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PE----- 76 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hH-----
Confidence 33333444667777778889999999999888777422 67778889999999999999999999997642 32
Q ss_pred hHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 036731 126 NIVAYGC-LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA--LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202 (259)
Q Consensus 126 ~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 202 (259)
..-|.. -...+.+.+.+..|+.+...|.+. |....-..-+.+ ....+++..+..+.++....| +..+.+.
T Consensus 77 -~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in 149 (459)
T KOG4340|consen 77 -LEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQIN 149 (459)
T ss_pred -HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhcc
Confidence 123322 256677889999999999988764 222221112222 235788888888888776433 3444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
..-...+.|+++.|.+-|+...+.+---+...|+ +.-+..+.|+...|++...+
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISE 203 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHH
Confidence 4445568999999999999988754333344565 44456667888888776543
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.13 E-value=0.00079 Score=49.51 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 036731 89 FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168 (259)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (259)
+-.....+...|++++|.+.|+++......+. .-....-.++.++.+.+++++|...+++..+....-...-+...
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~----~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 33455566778999999999999987533221 12233456778899999999999999999886433222334444
Q ss_pred HHHH
Q 036731 169 IHAL 172 (259)
Q Consensus 169 i~~~ 172 (259)
+.+.
T Consensus 111 ~~g~ 114 (243)
T PRK10866 111 MRGL 114 (243)
T ss_pred HHHH
Confidence 4443
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.10 E-value=0.00028 Score=55.11 Aligned_cols=94 Identities=9% Similarity=-0.123 Sum_probs=80.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 211 (259)
.....+...|++++|+..|++....... +...|..+..++...|++++|+..++++.... +.+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 3456677889999999999999987533 66788888899999999999999999998873 346778888999999999
Q ss_pred CHHHHHHHHHHHhhCC
Q 036731 212 ETSKVIELLRSMDKRN 227 (259)
Q Consensus 212 ~~~~a~~~~~~~~~~~ 227 (259)
++++|...|++.++.+
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999998764
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.10 E-value=7.2e-05 Score=52.51 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----------------CChhHHHHH
Q 036731 126 NIVAYGCLIDGLCK-----IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND----------------EQMDKAHDL 184 (259)
Q Consensus 126 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~~~ 184 (259)
+..+|..+++.|.+ .|..+-....++.|.+.|+.-|..+|+.|+..+=+. .+-+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 45788888888864 477888888999999999999999999999986542 234568999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 036731 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNET 213 (259)
Q Consensus 185 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 213 (259)
+++|...|+.||.+++..+++.+.+.+..
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999777654
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.09 E-value=0.00025 Score=55.37 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=66.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (259)
...+...|++++|+..|++..... |+ +...|..+..+|...|++++|+..+++...... .+...|..+..+|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~-----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PN-----NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHH
Confidence 445566778888888888877643 33 456777778888888888888888888877642 2555677777778
Q ss_pred HhcCChhHHHHHHHHHHhc
Q 036731 173 CNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~ 191 (259)
...|++++|...|++....
T Consensus 81 ~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHhCCHHHHHHHHHHHHHh
Confidence 8888888888888887765
No 168
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.09 E-value=0.0015 Score=46.69 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=29.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC--CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
....+.+.|++.+|.+.|+.+... +.+-.....-.++.++.+.|+++.|...++++.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455566666666666666543 11122333444555556666666666666665544
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.08 E-value=0.00021 Score=47.82 Aligned_cols=98 Identities=11% Similarity=-0.074 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
....-.+...+...|++++|..+|+.+.... +-+..-|..|.-++-..|++++|+..|.......+ -|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3445556677788999999999999998764 33667778888899999999999999999998864 478888899999
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 036731 96 LCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~ 115 (259)
+...|+.+.|.+.|+.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987653
No 170
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0017 Score=55.80 Aligned_cols=210 Identities=13% Similarity=0.173 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
|+..|.-++....+.|.+++-.+.+...++..-.|... +.||-+|++.+++.+..+++ .-||......+.+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGD 1202 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhH
Confidence 77889999999999999999999998887775555544 57888999999988765554 2356666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHH--------------------
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT-------------------- 154 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------------------- 154 (259)
-|...+.++.|.-+|..+ .-|..+...+...|+++.|.+.-++..
T Consensus 1203 rcf~~~~y~aAkl~y~~v---------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV---------------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh---------------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhH
Confidence 788888888777666543 345556666666666655554433221
Q ss_pred ----HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc
Q 036731 155 ----RAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230 (259)
Q Consensus 155 ----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 230 (259)
...+.....-...++.-|...|-+++...+++...... +..-..|+-|.-.|++- ++++..+.++-.-.+
T Consensus 1268 AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsR---- 1341 (1666)
T KOG0985|consen 1268 AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR---- 1341 (1666)
T ss_pred HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh----
Confidence 11112223334556777777777777777776654321 22334566665555543 455555544433221
Q ss_pred chHHHHHHHHHHHHhcccCCcchhhh
Q 036731 231 YASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 231 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.-...+++++.+...|.+..-+|.
T Consensus 1342 --vNipKviRA~eqahlW~ElvfLY~ 1365 (1666)
T KOG0985|consen 1342 --VNIPKVIRAAEQAHLWSELVFLYD 1365 (1666)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHH
Confidence 123357777777777766655544
No 171
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.02 E-value=0.0002 Score=59.22 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=70.4
Q ss_pred HHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHH
Q 036731 59 HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138 (259)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (259)
.+......+.+|+.+++.+.+.. .....|..+...|+..|+++.|.++|-+. ..++-.|..|.
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------------~~~~dai~my~ 802 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------------DLFKDAIDMYG 802 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------------chhHHHHHHHh
Confidence 34455667777888877777652 23445777888888888888888888543 45667788888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 036731 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLF 185 (259)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 185 (259)
+.|+|+.|.++-.+... .......|..-..-+-..|++.+|.+++
T Consensus 803 k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred ccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 88888888887766532 2334444544444445555555555443
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.02 E-value=0.0016 Score=53.39 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=100.3
Q ss_pred CCCCchhhHHHHHHHHHHc--C---CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC--------ChHHHH
Q 036731 81 GLQSDVVTFNVIMDELCKN--R---KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG--------KLKNAR 147 (259)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~ 147 (259)
+.+.+...|...+++.... + +...|..+|++..+. .|+ ....|..+..++.... ++..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~-----~a~a~A~la~~~~~~~~~~~~~~~~l~~a~ 404 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPD-----FTYAQAEKALADIVRHSQQPLDEKQLAALS 404 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCC-----cHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3456778888888875432 2 367899999999875 454 3455665555443321 123344
Q ss_pred HHHHHHHHc-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 148 ELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 148 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
+..+..... ....+...|..+.-.....|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++....
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444443332 12334567777766677789999999999999987 578889999999999999999999999998765
Q ss_pred CCccchHHHH
Q 036731 227 NVMPYASILS 236 (259)
Q Consensus 227 ~~~~~~~~~~ 236 (259)
.|...+|.
T Consensus 483 --~P~~pt~~ 490 (517)
T PRK10153 483 --RPGENTLY 490 (517)
T ss_pred --CCCCchHH
Confidence 44444443
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.01 E-value=0.0011 Score=54.18 Aligned_cols=144 Identities=13% Similarity=0.005 Sum_probs=100.1
Q ss_pred CCCCchHhHHHHHHHHhhcC-----ChhHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHHcC--------CHHHHHHHHHH
Q 036731 46 NINPNVVTYNSLIHGFCYAN-----DGNEAEYLFIEMMDRGLQSD-VVTFNVIMDELCKNR--------KMDEATRLLDL 111 (259)
Q Consensus 46 ~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~a~~~~~~ 111 (259)
+.+.|...|...+++..... +...|..+|++..+. .|+ ...+..+..++.... +...+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44667888988888754432 366899999999987 444 445554444433221 22334444444
Q ss_pred HHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
.......+. +...|..+.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 410 a~al~~~~~-----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNV-----LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 333222222 34778888777778899999999999999875 68889999999999999999999999998876
Q ss_pred CCCCcHHHH
Q 036731 192 GVAPNCVIF 200 (259)
Q Consensus 192 ~~~p~~~~~ 200 (259)
.|...+|
T Consensus 483 --~P~~pt~ 489 (517)
T PRK10153 483 --RPGENTL 489 (517)
T ss_pred --CCCCchH
Confidence 4554454
No 174
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=98.00 E-value=0.00026 Score=46.10 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=63.4
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 85 DVVTFNVIMDELCKNRKMDEATRLLDLMIQGG---------VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
|..++..++.++++.|+.+....+++..-..+ ..++....|+..+..+++.+|+..|++..|.++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34566677777777777777777666553222 344444667888888888888888888888888888765
Q ss_pred -cCCCCChhhHHHHHHHHHhc
Q 036731 156 -AGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 156 -~~~~~~~~~~~~li~~~~~~ 175 (259)
.+++.+..+|..|++-+...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 46666777888888765543
No 175
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.99 E-value=0.0015 Score=55.86 Aligned_cols=214 Identities=11% Similarity=-0.016 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036731 32 VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL 111 (259)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 111 (259)
...|...|-+..+.... =...|..|...|+...+...|.+.|+...+.... +...+....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55555555554443211 2456777888887777888888888888766422 567777888888888888888888433
Q ss_pred HHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
..+. .|- .....-|....-.|...++...+..-|+......+. |...|..+..+|..+|++..|.++|.+....
T Consensus 552 ~~qk--a~a---~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 552 AAQK--APA---FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred Hhhh--chH---HHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 3222 111 011233334445567778888888888887776544 7778888899999999999999999887765
Q ss_pred CCCCcHHHHHHHHH--HHHhcCCHHHHHHHHHHHhhC------CCccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 192 GVAPNCVIFTTLMP--SFIRKNETSKVIELLRSMDKR------NVMPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 192 ~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.|+. +|..... ..+..|.+.++...+...... +...-..++......+...|-...|..+++
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~e 695 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFE 695 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4543 3333332 234568888888877765531 112234445555555555555555555544
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.95 E-value=0.0016 Score=42.02 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=6.6
Q ss_pred HHHHcCCHHHHHHHHHH
Q 036731 95 ELCKNRKMDEATRLLDL 111 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~ 111 (259)
.+...|++++|..++++
T Consensus 47 tlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 47 TLRNLGRYDEALALLEE 63 (120)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 33333333333333333
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.92 E-value=0.0018 Score=41.72 Aligned_cols=92 Identities=17% Similarity=0.102 Sum_probs=46.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHH
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN----VVTYNI 167 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 167 (259)
+..++-..|+.++|+.+|++....|..... -...+..+...+...|++++|..++++..... |+ ......
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~----~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f 80 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGAD----RRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVF 80 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHH
Confidence 334455566666666666666655544321 23455555566666666666666666555431 22 111111
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 036731 168 TIHALCNDEQMDKAHDLFLDME 189 (259)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~ 189 (259)
+..++...|+.++|...+-...
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 2234445556666555554433
No 178
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.90 E-value=0.0043 Score=48.65 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
.|+.+|-.|+.-+...+..++..+++++|... .+-=..+|..-|.+=....++..+..+|.+....... ...|...+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 47889999999999999999999999999754 4555678888888777889999999999998876544 33444443
Q ss_pred H
Q 036731 94 D 94 (259)
Q Consensus 94 ~ 94 (259)
.
T Consensus 117 ~ 117 (660)
T COG5107 117 E 117 (660)
T ss_pred H
Confidence 3
No 179
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.85 E-value=0.0015 Score=44.09 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 188 (259)
+...++..+...|+++.|..+.+.+.... +.+...|..+|.++...|+...|.+.|+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33344444444555555555555544442 124444555555555555555555554443
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.84 E-value=0.0017 Score=55.46 Aligned_cols=163 Identities=9% Similarity=0.038 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC-CCCchhhHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG-LQSDVVTFNVIMDE 95 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 95 (259)
..|..|...|...-+..+|.+.|+...+.. ..+..........|++..+++.|..+.-..-+.. ...-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 568888888888888899999999988764 3467788889999999999999998833322221 01112233334455
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH--HHH
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH--ALC 173 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~ 173 (259)
|...++...|..-|+..... .|. |...|..+..+|.+.|++..|.++|.+.... .|+. +|...-. ..+
T Consensus 572 yLea~n~h~aV~~fQsALR~--dPk-----D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRT--DPK-----DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMEC 641 (1238)
T ss_pred ccCccchhhHHHHHHHHhcC--Cch-----hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHH
Confidence 67788899999999887764 333 7799999999999999999999999887764 3432 3433322 345
Q ss_pred hcCChhHHHHHHHHHHh
Q 036731 174 NDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~ 190 (259)
..|.+.++...+.....
T Consensus 642 d~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 67888888888887654
No 181
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.002 Score=51.22 Aligned_cols=193 Identities=10% Similarity=0.081 Sum_probs=135.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHH-
Q 036731 54 YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC- 132 (259)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 132 (259)
...+.++..+..+++.|++-+....+.. -+..-++....+|...|.+...........+.|... ..-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-------rad~klI 297 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-------RADYKLI 297 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-------HHHHHHH
Confidence 4556777788889999999999888775 466667778888999888888777776666555432 123333
Q ss_pred ------HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH-------------------------HHHHHHHHhcCChhHH
Q 036731 133 ------LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY-------------------------NITIHALCNDEQMDKA 181 (259)
Q Consensus 133 ------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~a 181 (259)
+..+|.+.++++.+...|++....-..|+..+- ..-...+.+.|++..|
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 333566677888899888876554333332211 1113346678889999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 182 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
...|.+++... +-|...|..-.-+|.+.|.+..|.+=.+..++.+ ++....|..-..++....++++|++.|.+
T Consensus 378 v~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 378 VKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988874 5567788888889999999988888877777664 44566666667777777777777777653
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=0.00012 Score=42.17 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=28.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
..|++++|...|+++.... +-+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666666666655542 224455555566666666666666666665544
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00061 Score=50.21 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=82.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (259)
..+.+++.+|+..|.+.++. .|. |.+.|..-..+|++.|+++.|.+-.+.....+.. ...+|..|-.+|...
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~-----nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPT-----NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCC-----cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHcc
Confidence 56788999999999998875 444 6688999999999999999999888888776422 567899999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 036731 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 206 (259)
|++++|.+.|++.++. .|+-.+|..=+..
T Consensus 163 gk~~~A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 9999999999988865 6777776655443
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.79 E-value=0.00019 Score=41.29 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=51.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 036731 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204 (259)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 204 (259)
...|++++|..+|+++...... +...+..+..++.+.|++++|..+++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 5679999999999999887433 7778888999999999999999999999987 66655554443
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0065 Score=44.29 Aligned_cols=135 Identities=9% Similarity=-0.048 Sum_probs=75.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHH
Q 036731 55 NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134 (259)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 134 (259)
+.+++++...+.+.-...++.+..+...+.++.....|++.-.+.||.+.|...|++..+..-..+. ......+.....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~-~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG-LQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc-cchhHHHHhhhh
Confidence 4445555556666666667777666655556666666777777777777777777765543322221 001112223333
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
..|.-.+++..|...+.++...+.. |....|.-.-+..-.|+...|.+.++.|++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445556666666666666554322 3333343333444456667777777777665
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.0011 Score=49.00 Aligned_cols=105 Identities=11% Similarity=0.013 Sum_probs=85.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 036731 135 DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214 (259)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 214 (259)
.-..+.+++++|+..|.+.++.... |.+-|..-..+|++.|.++.|.+-.+.....+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3456788999999999999997533 77788888999999999999999988888763 223578999999999999999
Q ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHHH
Q 036731 215 KVIELLRSMDKRNVMPYASILSIIVDLLV 243 (259)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (259)
+|.+.|+..++. .|+..+|..=+....
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHHHHH
Confidence 999999998865 677777776555443
No 187
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0015 Score=54.82 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------------------CCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAG--------------------LMPNVVTYNITIHALCNDEQMDKAHDLFLD 187 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (259)
..|.-.....-..|+.+.|+.+|...++.= -.-|......+.+.|...|++.+|..+|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445555555555566666665555443210 012445555666777777777777776655
Q ss_pred H
Q 036731 188 M 188 (259)
Q Consensus 188 ~ 188 (259)
.
T Consensus 993 A 993 (1416)
T KOG3617|consen 993 A 993 (1416)
T ss_pred H
Confidence 4
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.74 E-value=0.0003 Score=40.03 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=30.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
...+.+.|++++|.+.|++..+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555566666666666655543 224555555555555666666666666555543
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=0.00052 Score=39.03 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=39.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
+...+...|++++|...|+++.+.. |+ +...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PD-----NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TT-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777777777777777653 33 5677777777777777777777777777654
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=0.00046 Score=39.77 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG-KLKNARELSQSLTR 155 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 155 (259)
..+|..+...+...|++++|+..|.+..+.+ |+ +...|..+..++...| ++++|+..+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~-----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PN-----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TT-----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555666666666666666555532 22 4455555666666665 45666665555544
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.71 E-value=0.0035 Score=46.63 Aligned_cols=98 Identities=13% Similarity=0.056 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCcHHHH
Q 036731 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV----VTYNITIHALCNDEQMDKAHDLFLDMEVK--GVAPNCVIF 200 (259)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~ 200 (259)
...|...+....+.|++++|...|+.+.+.- |+. ..+-.+..+|...|++++|...|+.+.+. +-+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3566666666677899999999999998863 343 47788889999999999999999999865 111224555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 201 TTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
..+...+...|+.++|.++++++.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56677788999999999999999876
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.69 E-value=0.00039 Score=40.10 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=27.8
Q ss_pred HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 036731 52 VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR-KMDEATRLLDLMI 113 (259)
Q Consensus 52 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 113 (259)
.+|..+...+...|++++|+..|++..+... .+...|..+..++...| ++++|++.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444555555555544444421 13444444444444444 3445544444443
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.014 Score=44.79 Aligned_cols=106 Identities=12% Similarity=0.205 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 208 (259)
+.+.-+.-+...|+...|.++-++.. .|+..-|..-+.+++..++|++-..+-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666777888888887766653 36888888999999999999887776432 124467888999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
+.|+..+|..++..+ + +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 999999988888762 1 14456677888888777665
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.66 E-value=0.0038 Score=46.45 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=42.6
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh
Q 036731 62 CYANDGNEAEYLFIEMMDRGLQSD--VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139 (259)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (259)
.+.|++++|...|+.+.+...... ...+-.+..+|...|++++|...|+.+.+.- |+. ......+..+..++..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s--~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKS--PKAADAMFKVGVIMQD 229 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCC--cchhHHHHHHHHHHHH
Confidence 444555555555555554421110 1234445555555555555555555555321 110 0022333344444555
Q ss_pred cCChHHHHHHHHHHHHc
Q 036731 140 IGKLKNARELSQSLTRA 156 (259)
Q Consensus 140 ~~~~~~a~~~~~~~~~~ 156 (259)
.|+.++|..+|+.+.+.
T Consensus 230 ~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55555555555555543
No 195
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.63 E-value=0.00064 Score=45.86 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=39.5
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCC
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-----QGGVRPD 120 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~ 120 (259)
....++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+...|.++|+++. +.|+.|+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 45556666667777777777777776653 3356677777777777777777777776653 3466665
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.013 Score=42.77 Aligned_cols=133 Identities=12% Similarity=0.081 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (259)
..+.++.+..-.+.+.-....+.++++..... ++.....+.+.-.+.||.+.|...|++..+..-..+..+.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI 252 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence 34556666777788888899999998854333 558999999999999999999999998876543444444444
Q ss_pred H-----HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 168 T-----IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 168 l-----i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
+ ...+.-++++..|...+.+....+ ..|+...|.-.-+..-.|+...|.+.+..|....
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3 334556788888888888887663 2344444443334445789999999999998764
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.58 E-value=0.011 Score=40.85 Aligned_cols=155 Identities=10% Similarity=0.013 Sum_probs=91.4
Q ss_pred HHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHH
Q 036731 58 IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137 (259)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (259)
..+..+.=+++...+-..+-. ..-|+...--.|..+....|+..+|...|++.... +..+ |......+.++.
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~-----d~a~lLglA~Aq 134 (251)
T COG4700 63 LMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAH-----DAAMLLGLAQAQ 134 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCC-----CHHHHHHHHHHH
Confidence 334444445544433222222 23456666666777777777777777777776543 3332 446677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 036731 138 CKIGKLKNARELSQSLTRAGLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKV 216 (259)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 216 (259)
...+++..|...++.+.+.... -+..+.-.+.+.+...|.+.+|+.-|+..... .|+...-......+.+.|+.+++
T Consensus 135 fa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 135 FAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 7777777777777777665310 12223445566777777777777777777765 55555544445555666666555
Q ss_pred HHHHHH
Q 036731 217 IELLRS 222 (259)
Q Consensus 217 ~~~~~~ 222 (259)
..-+..
T Consensus 213 ~aq~~~ 218 (251)
T COG4700 213 NAQYVA 218 (251)
T ss_pred HHHHHH
Confidence 444333
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.58 E-value=0.00043 Score=41.03 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccch-hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI-NIVAYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
..+++.+...|...|++++|+..|++..+..-.... ..+ ...++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456788899999999999999999988754111110 122 367889999999999999999999988654
No 199
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.56 E-value=0.00099 Score=48.84 Aligned_cols=98 Identities=13% Similarity=0.173 Sum_probs=80.1
Q ss_pred cccccccc--cCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC------------
Q 036731 5 NREFGVVC--KPNTVTYNTIIDGLCKE-----GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN------------ 65 (259)
Q Consensus 5 ~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------------ 65 (259)
++.|+... +.|-.+|-+.+..+... +.++-....++.|.+-|+..|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45565544 56888899888888653 667778888899999999999999999998765432
Q ss_pred ----ChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCH
Q 036731 66 ----DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102 (259)
Q Consensus 66 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (259)
+-+-++.++++|...|+.||..+-..|++++.+.+..
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345899999999999999999999999999998764
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.56 E-value=0.014 Score=41.73 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=96.6
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHcCCC--CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHH
Q 036731 55 NSLIHGFCYANDGNEAEYLFIEMMDRGLQ--SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132 (259)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (259)
-.....+...|++.+|...|+.+...... -.....-.++.++.+.|+++.|...++++.+. -|+. ....+..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~----~~~~~A~ 82 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNS----PKADYAL 82 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-----TTHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCC----cchhhHH
Confidence 33445667889999999999999876322 12345556788899999999999999998764 2322 1122222
Q ss_pred HHHHHHhcC-------------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHH
Q 036731 133 LIDGLCKIG-------------KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199 (259)
Q Consensus 133 l~~~~~~~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 199 (259)
.+.+.+... ...+|... +..++.-|-.+....+|...+..+.+. =...
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHH
Confidence 222222111 11223333 344444444455555666555555433 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC--CCccchHHHHHHHHHHHHhcccC
Q 036731 200 FTTLMPSFIRKNETSKVIELLRSMDKR--NVMPYASILSIIVDLLVKNEISL 249 (259)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 249 (259)
--.+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 223567788889999998888888765 22223345667778888887765
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.015 Score=43.31 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCcHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE---QMDKAHDLFLDMEVKGVAPNCVIFTT 202 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~ 202 (259)
|...|..|..+|...|+.+.|..-|....+.. .++...+..+..++..+. ...++..+|+++...+ +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66889999999999999999999888887753 235556666666555432 3557888888888764 345666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 203 LMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
|...+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7778888899999999999888763
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.024 Score=42.19 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=79.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhCCCccchHHH
Q 036731 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK---NETSKVIELLRSMDKRNVMPYASIL 235 (259)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (259)
+-|...|..|..+|...|+++.|..-|.+..+.. .++...+..+..++... ....++..+|+++...+ +-+....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3488899999999999999999999999988762 45667777777666543 34568999999999875 3467777
Q ss_pred HHHHHHHHHhcccCCcchhhhcc
Q 036731 236 SIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 236 ~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
..+...+...|++.+|...|+.|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHH
Confidence 78888899999999999988765
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.43 E-value=0.0067 Score=39.56 Aligned_cols=101 Identities=10% Similarity=0.087 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
|..++..++.++++.|+.+....+++..-. +.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 346777788888888888887777765432 2211100 0000 1112245677777777777
Q ss_pred HHHhcCCHHHHHHHHHHHhh-CCCccchHHHHHHHHHHHHhc
Q 036731 206 SFIRKNETSKVIELLRSMDK-RNVMPYASILSIIVDLLVKNE 246 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 246 (259)
+|+..|++..|.++++...+ .+++.+..+|..|++-....-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 77777777777777776543 355556667777766554443
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=97.36 E-value=0.02 Score=38.85 Aligned_cols=90 Identities=11% Similarity=-0.052 Sum_probs=68.6
Q ss_pred HHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHH
Q 036731 59 HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138 (259)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (259)
.-+...|++++|..+|.-+.-.++. +..-|..|..+|-..+++++|+..|......+.. |++.+-....++.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-------dp~p~f~agqC~l 116 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-------DYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-------CCCccchHHHHHH
Confidence 3456789999999999888765433 5666777888888889999999988877654432 3466777888888
Q ss_pred hcCChHHHHHHHHHHHHc
Q 036731 139 KIGKLKNARELSQSLTRA 156 (259)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~ 156 (259)
..|+.+.|...|+.....
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 999999999988888763
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.32 E-value=0.003 Score=36.76 Aligned_cols=53 Identities=8% Similarity=0.058 Sum_probs=23.9
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
+.+.++++.|..+++.+...+ +.+...+.....++.+.|++++|.+.+++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444431 22333344444444444555555555544443
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.30 E-value=0.0011 Score=39.28 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMK 43 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 43 (259)
+|+.+...|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555555555555554443
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.27 E-value=0.0035 Score=36.47 Aligned_cols=64 Identities=8% Similarity=-0.091 Sum_probs=53.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHH
Q 036731 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIF 200 (259)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 200 (259)
-..|.+.+++++|..+++.+...+.. +...+.....++...|++++|...|+...+. .|+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHH
Confidence 46788999999999999999998533 6778888899999999999999999999977 4554443
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.0053 Score=47.63 Aligned_cols=129 Identities=10% Similarity=-0.054 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCcH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLT----RAGLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK----G-VAPNC 197 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~p~~ 197 (259)
..|..|...|.-.|+++.|+...+.-. +.|-+ .-...+..+..++.-.|+++.|.+.|+.-... | -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 455666666667788999887765532 22311 13456777888888899999999988764322 2 12344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh----C-CCccchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 198 VIFTTLMPSFIRKNETSKVIELLRSMDK----R-NVMPYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.+..+|...|.-..++++|+.++.+-+. . +..-....+.++..+|...|..++|+.+..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5666788888888889999988876332 1 123345678889999998888888876543
No 209
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=97.13 E-value=0.072 Score=40.50 Aligned_cols=132 Identities=10% Similarity=0.162 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhh--cCC----hhHHHHHHHHHHHcCC---CCchhhHHHHHHHHHHcCC-
Q 036731 32 VDKAKELFLQMKDENINPNVVTYNSLIHGFCY--AND----GNEAEYLFIEMMDRGL---QSDVVTFNVIMDELCKNRK- 101 (259)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 101 (259)
+++...+++.|.+.|+.-+..+|-+....... ..+ ..++..+|+.|++... .++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566677777777777666555543322222 222 3457777777776532 1233344444333 2222
Q ss_pred ---HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhhHHHHH
Q 036731 102 ---MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK--LKNARELSQSLTRAGLMPNVVTYNITI 169 (259)
Q Consensus 102 ---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li 169 (259)
.+.++.+|+.+.+.|..... +......++..+....+ ...+..+++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn----~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGN----DLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 24566677777776766654 44444444444433322 336667777777777776666555443
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.11 E-value=0.045 Score=37.93 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=73.2
Q ss_pred CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhH
Q 036731 48 NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127 (259)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
.|+...-..|..+....|+..+|...|++...--+--|....-.+.++....+++..|...++.+-+.. |.. .++
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~---r~p 160 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAF---RSP 160 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--Ccc---CCC
Confidence 455555555666666667777776666666543344455555566666666666666666666665543 111 122
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLD 187 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (259)
.+...+.+.+...|.+.+|+.-|+..... -|+...-......+.+.|+.+++..-+..
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 34455566666666666666666666654 23333322333334455555544443333
No 211
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.09 E-value=0.039 Score=36.84 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 036731 20 NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99 (259)
Q Consensus 20 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (259)
..++..+.+.+.......+++.+...+ ..+...++.++..|++.+ ..+....+.. .++......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555566666666666665554 245556666666665442 2222233221 11233334455555555
Q ss_pred CCHHHHHHHHHHH
Q 036731 100 RKMDEATRLLDLM 112 (259)
Q Consensus 100 ~~~~~a~~~~~~~ 112 (259)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.07 E-value=0.031 Score=45.00 Aligned_cols=159 Identities=12% Similarity=0.047 Sum_probs=105.4
Q ss_pred HHHHHhcCChHHHHHHHH--HHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 036731 23 IDGLCKEGFVDKAKELFL--QMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (259)
.+...-.++++.+.++.+ ++.. .++ ....+.++..+.+.|-.+.|+++..+-. .-.....+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence 455566889999877775 2221 222 4557889999999999999998864322 2345567789
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 036731 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180 (259)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (259)
+++.|.++.++.. +...|..|.....+.|+++.|+..|++..+ |..|+-.|...|+.+.
T Consensus 333 ~L~~A~~~a~~~~------------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 333 NLDIALEIAKELD------------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp -HHHHHHHCCCCS------------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred CHHHHHHHHHhcC------------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence 9999987754321 347999999999999999999999987543 5667777888899888
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036731 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223 (259)
Q Consensus 181 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (259)
-.++.+.....| -++..+.++.-.|+.++..+++.+.
T Consensus 392 L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 392 LSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 877777777664 2555556666778888888777543
No 213
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.05 E-value=0.1 Score=41.36 Aligned_cols=148 Identities=15% Similarity=0.232 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhH-HHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDEN-INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF-NVIM 93 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 93 (259)
..+|...|....+..-++.|..+|-++.+.| +.+++..++++|..++ .|+...|..+|+-=... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4566677777777777888999999988887 5677888888887665 47888888888754443 2344433 5567
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
..+...++-+.|..+|+.....--. +. -...|..+|..-...|+...+..+=+.|... .|...+...+.+.|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~-~q----~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEK-TQ----LKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHH-hh----hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 7778888888888888843321000 00 1368888888888888888888877777664 445445444544444
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.01 E-value=0.045 Score=43.45 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCch----HhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV----VTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999998876 4553 35899999999999999999999999875
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.035 Score=46.25 Aligned_cols=195 Identities=14% Similarity=0.144 Sum_probs=101.7
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCc--------hHhHHHHHHHHhhcCChhHHHH
Q 036731 2 ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPN--------VVTYNSLIHGFCYANDGNEAEY 72 (259)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------~~~~~~li~~~~~~~~~~~a~~ 72 (259)
++|....+. .|-+..|..+.....+.-.++.|+..|-+...- |++.- ...-..=+. +--|++++|.+
T Consensus 680 edA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek 755 (1189)
T KOG2041|consen 680 EDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEK 755 (1189)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhh
Confidence 344444444 466777888888777777788888777666432 33211 111111122 23478888888
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036731 73 LFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152 (259)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (259)
+|-+|-++. ..+..+.+.|++-...++++. .|...+. ..-...|+.+...+.....|++|.+.|..
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~---g~~d~dD--~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRN---GGSDDDD--EGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHc---cCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887776552 234455556666554444431 1111110 11224555555555555555555555443
Q ss_pred HHH---------------------cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 036731 153 LTR---------------------AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 153 ~~~---------------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 211 (259)
-.. ..++.+....-.+..++...|.-++|.+.+-+-- .| ...+..|...+
T Consensus 822 ~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 822 CGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELN 892 (1189)
T ss_pred ccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHH
Confidence 211 1123344555556666666666666655543221 11 12345666677
Q ss_pred CHHHHHHHHHHH
Q 036731 212 ETSKVIELLRSM 223 (259)
Q Consensus 212 ~~~~a~~~~~~~ 223 (259)
+|.+|.++-++.
T Consensus 893 QW~~avelaq~~ 904 (1189)
T KOG2041|consen 893 QWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHhc
Confidence 777777766554
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.96 E-value=0.057 Score=44.04 Aligned_cols=162 Identities=10% Similarity=0.054 Sum_probs=101.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK----IGKLKNARELSQSLTRAGLMPNVVTYNIT 168 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (259)
+....=.|+-+.+++.+.+..+.+--..+......-.|..++..++. ..+.+.|.++++.+.+. -|+...|...
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~ 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFF 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 33344568888898888876653222111011112344444444443 44678899999999886 5777766554
Q ss_pred H-HHHHhcCChhHHHHHHHHHHhcC--C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHH-HHH
Q 036731 169 I-HALCNDEQMDKAHDLFLDMEVKG--V-APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD-LLV 243 (259)
Q Consensus 169 i-~~~~~~~~~~~a~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 243 (259)
- +.+...|++++|.+.|++..... . +.....+--+...+.-..+|++|.+.|.++.+.+ .-+..+|.-+.- ++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 3 55667899999999999765421 1 1123345556667788999999999999999764 223444443332 245
Q ss_pred Hhccc-------CCcchhhhc
Q 036731 244 KNEIS-------LNSIPQFNR 257 (259)
Q Consensus 244 ~~g~~-------~~a~~~~~~ 257 (259)
..|+. ++|.++|.+
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred hhccchhhhhhHHHHHHHHHH
Confidence 66777 667776654
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.94 E-value=0.12 Score=39.83 Aligned_cols=111 Identities=10% Similarity=0.112 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (259)
.+.+..+.-|...|+...|.++-.+.. .| +...|...+.+++..++|++-..+... + -++..|.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~------dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGye 241 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VP------DKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYE 241 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----Cc------HHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChH
Confidence 455666777888899888888866552 23 568999999999999999988776543 1 1457899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036731 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223 (259)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (259)
.++.+|...|+..+|..+...+ + +..-+..|.+.|++.+|.+...+.
T Consensus 242 pFv~~~~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 242 PFVEACLKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999999998888662 1 244566778888888887765433
No 218
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.92 E-value=0.011 Score=43.56 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------ChhHHHHH
Q 036731 126 NIVAYGCLIDGLCK-----IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE----------------QMDKAHDL 184 (259)
Q Consensus 126 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~~ 184 (259)
|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|..|++.+-+.. +-+=+.++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44667666666653 3567777778888999999999999999988865432 22347889
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 036731 185 FLDMEVKGVAPNCVIFTTLMPSFIRKNETS-KVIELLRSM 223 (259)
Q Consensus 185 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~ 223 (259)
+++|...|+.||..+-..|+.++.+.+..- +..++.--|
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 999999999999999999999998887653 334443334
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.038 Score=40.66 Aligned_cols=98 Identities=20% Similarity=0.198 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC-C-chhhHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ-S-DVVTFNVI 92 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l 92 (259)
..|+.-+..+ +.|++..|...|....+. +-.-....+-.|..++...|++++|..+|..+.+.-.+ | -+..+-.|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3677766655 677899999999999876 22234566788999999999999999999999875322 1 24667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 036731 93 MDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 88899999999999999999875
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.86 E-value=0.064 Score=35.56 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (259)
+...+-.-.....+.|++++|.+.|+.+..+ .-+-....--.++.+|.+.++++.|...+++.++........-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3444444556667899999999999999876 11224456667889999999999999999999988655445566666
Q ss_pred HHHHHHcC
Q 036731 93 MDELCKNR 100 (259)
Q Consensus 93 ~~~~~~~~ 100 (259)
+.+++.-.
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 66655443
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.86 E-value=0.073 Score=36.20 Aligned_cols=96 Identities=13% Similarity=-0.025 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 208 (259)
..-...--+...|++++|..+|+-+.-.+.- +..-|..|..++-..+++++|...|...-..+. -|+..+-....++.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHH
Confidence 3334455567889999999999999876543 555667777788889999999999987665532 24444556688899
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 036731 209 RKNETSKVIELLRSMDKR 226 (259)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~ 226 (259)
..|+.+.|...|....+.
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 999999999999998874
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.057 Score=39.74 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-CC-CCcHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLM--PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GV-APNCVIFTTLM 204 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~p~~~~~~~l~ 204 (259)
.|+.-+..+. .|++..|...|....+.... -....+-+|..++...|+++.|..+|..+.+. +- +--+..+--|.
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4444443332 33455555555555543211 12223444555555555555555555555443 00 11123444444
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC
Q 036731 205 PSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 223
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.1 Score=40.80 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=84.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCChhhHH-----
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI--DGLCKIGKLKNARELSQSLTRAGLMPNVVTYN----- 166 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 166 (259)
.++.-.|+.++|.++--.+.+.+.. ..+...+ .++.-.++.+.+...|++....+ |+...-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~---------n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~ 245 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT---------NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMM 245 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc---------hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhh
Confidence 3455567777777766665554322 2333333 33445667777777777766543 3322211
Q ss_pred --------HHHHHHHhcCChhHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHH
Q 036731 167 --------ITIHALCNDEQMDKAHDLFLDMEVK---GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL 235 (259)
Q Consensus 167 --------~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (259)
.-..-..+.|++..|.+.|.+.+.. .+.|+...|........+.|+..+|..-.++..+.+. .-...+
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikal 324 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKAL 324 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHH
Confidence 1122234667777888777776644 3455666666666677777777777777776665421 122233
Q ss_pred HHHHHHHHHhcccCCcchhhh
Q 036731 236 SIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 236 ~~l~~~~~~~g~~~~a~~~~~ 256 (259)
..-..++...++|++|.+-|+
T Consensus 325 l~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666666666554
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.69 E-value=0.2 Score=39.03 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCchH--hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhH
Q 036731 14 PNTVTYNTIIDG--LCKEGFVDKAKELFLQMKDENINPNVV--TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89 (259)
Q Consensus 14 ~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (259)
.|....-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-..-+.|+.+.|.++-++....-. .-...+
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~ 191 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAA 191 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHH
Confidence 344444455543 34579999999999999753 2221 122333344567888888888877766532 245677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 036731 90 NVIMDELCKNRKMDEATRLLDLMIQ 114 (259)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (259)
...+...+..|+++.|+++++.-+.
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Confidence 8888999999999999999987654
No 225
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.65 E-value=0.097 Score=34.72 Aligned_cols=29 Identities=21% Similarity=0.060 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
.+-..++.+|.+.+++++|...++++.+.
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444444444444555544444444443
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.62 E-value=0.17 Score=37.10 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=89.3
Q ss_pred HhHHHHHHHHhhcCChhHHHHHHHHHHHcCC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCCccchhHH
Q 036731 52 VTYNSLIHGFCYANDGNEAEYLFIEMMDRGL--QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGG-VRPDAFCEINIV 128 (259)
Q Consensus 52 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 128 (259)
..|+..+. -.+.|++++|.+.|+.+....+ +-...+.-.++.++.+.++++.|+..+++....- ..|+ .
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-------~ 107 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-------A 107 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-------h
Confidence 34444332 3456777777777777664321 1123344445556666777777777776665432 2222 3
Q ss_pred HHHHHHHHHHhc-------CChHH---HHHHHHHHHHc----CCCCChhhH------------HHHHHHHHhcCChhHHH
Q 036731 129 AYGCLIDGLCKI-------GKLKN---ARELSQSLTRA----GLMPNVVTY------------NITIHALCNDEQMDKAH 182 (259)
Q Consensus 129 ~~~~l~~~~~~~-------~~~~~---a~~~~~~~~~~----~~~~~~~~~------------~~li~~~~~~~~~~~a~ 182 (259)
.|...|.+.+.. .|... |..-|+++... ...||...- ..+.+-|.+.|.+..|.
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 333334333321 22222 33333333332 111221111 23445677888888888
Q ss_pred HHHHHHHhcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 183 DLFLDMEVKGVAPN---CVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 183 ~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
.=++.|.+. .+-+ ...+-.+..+|...|-.++|.+.-+-+...
T Consensus 188 nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 188 NRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 888888877 2222 244566778888889888888876665544
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.61 E-value=0.24 Score=38.81 Aligned_cols=169 Identities=12% Similarity=0.004 Sum_probs=105.8
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcC---CCCchhhHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCCccc
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRG---LQSDVVTFNVIMDELCK---NRKMDEATRLLDLMIQGGVRPDAFCE 124 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (259)
..+...++-+|....+++...++.+.+.... +.-....-....-++.+ .|+.++|++++..+......+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~----- 215 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP----- 215 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-----
Confidence 3444556667999999999999999998652 11122222344556667 899999999999965544444
Q ss_pred hhHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-h---HHHHHH---HHH
Q 036731 125 INIVAYGCLIDGLCK---------IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM-D---KAHDLF---LDM 188 (259)
Q Consensus 125 ~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~---~a~~~~---~~~ 188 (259)
++.+|..+.+.|-. ....++|...|.+.-+. .|+..+=-.+...+...|.. + +..++- ..+
T Consensus 216 -~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l 292 (374)
T PF13281_consen 216 -DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSL 292 (374)
T ss_pred -ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44788888888743 12367788888776554 34544322233333333331 1 222222 221
Q ss_pred -HhcCC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 189 -EVKGV---APNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 189 -~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
.+.|. ..+--.+..++.++.-.|+.++|.+..++|.+..
T Consensus 293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 293 LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 12332 2344556678889999999999999999998764
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.60 E-value=0.046 Score=43.43 Aligned_cols=99 Identities=17% Similarity=0.078 Sum_probs=71.7
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHH
Q 036731 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV----VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI 199 (259)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 199 (259)
+.+...++.+..+|...|++++|...|++..+.+ |+. .+|..+..+|...|+.++|...+++..+.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 3467899999999999999999999999988864 553 358999999999999999999999998762 22 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHhhCCC
Q 036731 200 FTTLMP--SFIRKNETSKVIELLRSMDKRNV 228 (259)
Q Consensus 200 ~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~ 228 (259)
|..+.. .+....+..+..++++.+.+-|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 321111 11122333466667777766554
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.57 E-value=0.082 Score=42.66 Aligned_cols=134 Identities=15% Similarity=0.122 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
..-.+.++..+.+.|..+.|+++..+- ..-.....+.|+++.|.++.++ .++...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 445888888999999999998876432 1234456688999999887532 2367799999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (259)
..+.|+++-|++.|.+. .-+..|+-.|.-.|+.+.-.++.+.....| -++....++...
T Consensus 357 AL~~g~~~lAe~c~~k~---------------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~l 415 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKA---------------KDFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLL 415 (443)
T ss_dssp HHHTTBHHHHHHHHHHC---------------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhh---------------cCccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc
Confidence 99999999999999865 457888889999999988888888877765 256666677777
Q ss_pred CChhHHHHHHHHH
Q 036731 176 EQMDKAHDLFLDM 188 (259)
Q Consensus 176 ~~~~~a~~~~~~~ 188 (259)
|+.+++.+++.+-
T Consensus 416 gd~~~cv~lL~~~ 428 (443)
T PF04053_consen 416 GDVEECVDLLIET 428 (443)
T ss_dssp T-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc
Confidence 8988888877553
No 230
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.56 E-value=0.098 Score=36.51 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc--hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHH---H
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN--VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFN---V 91 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ 91 (259)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+....-..+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5678889999999999999999999987744443 4566778888899999999998888776432222212111 1
Q ss_pred HHH--HHHHcCCHHHHHHHHHHHH
Q 036731 92 IMD--ELCKNRKMDEATRLLDLMI 113 (259)
Q Consensus 92 l~~--~~~~~~~~~~a~~~~~~~~ 113 (259)
... .+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 122 2345778888888876554
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.49 E-value=0.29 Score=38.34 Aligned_cols=168 Identities=12% Similarity=0.040 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCchHhHHHHHHHHhh---cCChhHHHHHHHHHHHcCCCCchhhH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDEN---INPNVVTYNSLIHGFCY---ANDGNEAEYLFIEMMDRGLQSDVVTF 89 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (259)
..+...++-+|....+++...++++.+.... +.-....-....-++.+ .|+.++|++++..+....-.+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344456667999999999999999998651 11122222234445556 89999999999997766677888999
Q ss_pred HHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC----hHHHHHHH---HH-
Q 036731 90 NVIMDELCK---------NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK----LKNARELS---QS- 152 (259)
Q Consensus 90 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~~- 152 (259)
..+.+.|-. ....++|+..|.+.-+.. |+.+ .--.++..+...|. -.+..++- ..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y------~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l 292 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYY------SGINAATLLMLAGHDFETSEELRKIGVKLSSL 292 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--cccc------chHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 988887643 224677888887765543 4332 11122222223332 11223332 11
Q ss_pred HHHcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 153 LTRAGLM---PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 153 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
+.+.|.. .+--.+..++.++.-.|+.++|.+..++|...
T Consensus 293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 293 LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2233322 23345577889999999999999999999977
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.45 E-value=0.26 Score=37.30 Aligned_cols=222 Identities=14% Similarity=0.109 Sum_probs=127.3
Q ss_pred HHhcCChHHHHHHHHHHhhCC--CCCch------HhHHHHHHHHhhcC-ChhHHHHHHHHHHHc--------CCCCc---
Q 036731 26 LCKEGFVDKAKELFLQMKDEN--INPNV------VTYNSLIHGFCYAN-DGNEAEYLFIEMMDR--------GLQSD--- 85 (259)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~li~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~--- 85 (259)
..+.|+++.|..++.+....- ..|+. ..|+.-. .....+ +++.|...+++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 457899999999999887542 23332 1223222 334455 888888877766543 12222
Q ss_pred --hhhHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036731 86 --VVTFNVIMDELCKNRKMD---EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160 (259)
Q Consensus 86 --~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (259)
..++..++.+|...+..+ +|.++++.+...... .+.++..-+..+.+.++.+.+.+++.+|...- ..
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-------~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~ 153 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-------KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DH 153 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-------CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-cc
Confidence 245666778888777654 456666666543222 13677777888888999999999999998862 22
Q ss_pred ChhhHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCcHH-HHHH-HHH---HHHhcCC------HHHHHHHHHHHhh-C
Q 036731 161 NVVTYNITIHALCN--DEQMDKAHDLFLDMEVKGVAPNCV-IFTT-LMP---SFIRKNE------TSKVIELLRSMDK-R 226 (259)
Q Consensus 161 ~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~~-l~~---~~~~~~~------~~~a~~~~~~~~~-~ 226 (259)
....+..++..+.. ......+...+..+....+.|... .... ++. ...+.++ .+.+.+++..+.+ .
T Consensus 154 ~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~ 233 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSL 233 (278)
T ss_pred ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHh
Confidence 34456665555522 233456667776666555555554 1111 111 1112211 4445555554332 2
Q ss_pred CCccchHHHHHHH-------HHHHHhcccCCcchhhh
Q 036731 227 NVMPYASILSIIV-------DLLVKNEISLNSIPQFN 256 (259)
Q Consensus 227 ~~~~~~~~~~~l~-------~~~~~~g~~~~a~~~~~ 256 (259)
+.+.+..+..++. ..+.+.+++++|.+.|+
T Consensus 234 ~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 234 GKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 2233444433333 33566788888888775
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.29 Score=38.24 Aligned_cols=129 Identities=17% Similarity=0.055 Sum_probs=87.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC-----CCCCC---ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGG-----VRPDA---FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (259)
+.|.+.|++..|..-|++....= ..+.. ....-..+++.+..+|.+.+++..|+..-......+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 45667777777777776644210 00000 011233678889999999999999999999988875 3477777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHhcCCH-HHHHHHHHHHhh
Q 036731 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT-TLMPSFIRKNET-SKVIELLRSMDK 225 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~-~~a~~~~~~~~~ 225 (259)
-.-..++...|+++.|...|+++.+. .|+-.... .++..-.+.... +...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77788999999999999999999986 56554444 444444444333 344677777754
No 234
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.40 E-value=0.14 Score=35.73 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
..+..+...|.+.|+.+.|.+.|.++.+....+.. -...+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~----~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH----KIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666777777777777777776665444432 445666666667777777776666665543
No 235
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.38 E-value=0.3 Score=37.24 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH--cC----CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc
Q 036731 67 GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK--NR----KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140 (259)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (259)
+++.+.+++.|.+.|+.-+..++-+..-.... .. ...++..+|+.|++.....+. ++-.++..++.. ..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs---~~D~~~a~lLA~--~~ 152 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS---PEDYPFAALLAM--TS 152 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC---ccchhHHHHHhc--cc
Confidence 44577888999999999888777664444333 22 356789999999987554432 133455555444 33
Q ss_pred CC----hHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 141 GK----LKNARELSQSLTRAGLMPNV--VTYNITIHALCNDEQ--MDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 141 ~~----~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
.+ .+.++.+|+.+.+.|+..+- .....++..+..... ..++..+++.+.+.|+++....|..+.-..
T Consensus 153 ~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 153 EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 33 35678888888888876433 233334433333222 447889999999999998887776654433
No 236
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.34 E-value=0.087 Score=39.37 Aligned_cols=77 Identities=10% Similarity=0.123 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHH-----cCCCCchhhHHHH
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD-----RGLQSDVVTFNVI 92 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 92 (259)
++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555666666666666666666552 44666666666666666666666666666543 4566655555444
Q ss_pred HHH
Q 036731 93 MDE 95 (259)
Q Consensus 93 ~~~ 95 (259)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.33 E-value=0.47 Score=38.90 Aligned_cols=162 Identities=17% Similarity=0.102 Sum_probs=98.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC-CCCCc-----hHhHHHHHHHHhh----cCChhHHHHHHHHHHHcCCCCchhhHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDE-NINPN-----VVTYNSLIHGFCY----ANDGNEAEYLFIEMMDRGLQSDVVTFNV 91 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (259)
++....=.||-+.+++.+.+..+. ++.-. .-.|+..+..++. ..+.+.|.++++.+.+. -|+...|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 444445568888888888776554 22211 1223333333332 45667788888888876 456555543
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036731 92 -IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170 (259)
Q Consensus 92 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (259)
-.+.+...|++++|++.|++........ .+.....+.-+.-++.-..+|++|...|..+.+.. .-+..+|.-+..
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEW---KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhH---HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 3456677888999988888655321111 12244566667777888888999998888888753 223444444433
Q ss_pred H-HHhcCCh-------hHHHHHHHHHH
Q 036731 171 A-LCNDEQM-------DKAHDLFLDME 189 (259)
Q Consensus 171 ~-~~~~~~~-------~~a~~~~~~~~ 189 (259)
+ +...++. ++|..+|++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 3345666 77777777654
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.21 Score=39.03 Aligned_cols=124 Identities=13% Similarity=0.063 Sum_probs=86.2
Q ss_pred HHHhhcCChhHHHHHHHHHHHc-----CCCC---------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccc
Q 036731 59 HGFCYANDGNEAEYLFIEMMDR-----GLQS---------DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCE 124 (259)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (259)
+.+.+.|++..|..-|++.... +.++ -..++..+.-+|.+.+++..|++...+....+. +
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~---- 289 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP--N---- 289 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--C----
Confidence 4667788888888887775432 1111 224577788899999999999999999887643 2
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCh-hHHHHHHHHHHhc
Q 036731 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY-NITIHALCNDEQM-DKAHDLFLDMEVK 191 (259)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~-~~a~~~~~~~~~~ 191 (259)
|+...-.-..++...|+++.|+..|+++.+. .|+.... +.++..-.+.... +...++|..|...
T Consensus 290 -N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 290 -NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred -chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677888899999999999999999999986 4554444 4444443343333 3345677777543
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.36 Score=36.98 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch----hhHHHHHHHHHHcCCHHHH
Q 036731 30 GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV----VTFNVIMDELCKNRKMDEA 105 (259)
Q Consensus 30 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 105 (259)
|+..+|-..++++.+. .|.|...+..-=.+|...|+.+.-...+++.... ..++. ..-....-++...|-+++|
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444444445555443 3444455555555556666666555555555433 12222 1222223334456666666
Q ss_pred HHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChhHHH
Q 036731 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA---GLMPNVVTYNITIHALCNDEQMDKAH 182 (259)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (259)
++.-++..+.+.. |.-...+....+.-.|++.++.+++.+-... +-..-...|-...-.+...+.++.|+
T Consensus 195 Ek~A~ralqiN~~-------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 195 EKQADRALQINRF-------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred HHHHHhhccCCCc-------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 6665555443221 3445555555555666666666655443221 00001112222222333446666666
Q ss_pred HHHHH
Q 036731 183 DLFLD 187 (259)
Q Consensus 183 ~~~~~ 187 (259)
.+|+.
T Consensus 268 eIyD~ 272 (491)
T KOG2610|consen 268 EIYDR 272 (491)
T ss_pred HHHHH
Confidence 66653
No 240
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.14 E-value=0.13 Score=38.48 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-----KGVAPNCVIFTT 202 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~~ 202 (259)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|...|+.+.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 566667777777777888888888777764 33677788888888888888888877777654 377777776665
Q ss_pred HHHH
Q 036731 203 LMPS 206 (259)
Q Consensus 203 l~~~ 206 (259)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 241
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.12 E-value=0.02 Score=44.60 Aligned_cols=238 Identities=16% Similarity=0.049 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCc----hHhHHHHHHHHhhcCChhHHHHHHHHH--H--HcCCC
Q 036731 14 PNTVTYNTIIDG--LCKEGFVDKAKELFLQMKDENINPN----VVTYNSLIHGFCYANDGNEAEYLFIEM--M--DRGLQ 83 (259)
Q Consensus 14 ~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~--~--~~~~~ 83 (259)
.+...+..-+.+ +++.|+......+|+...+-|.. | ...|..|.++|.-.+++++|+++...= . ..|-+
T Consensus 13 q~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk 91 (639)
T KOG1130|consen 13 QDRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK 91 (639)
T ss_pred hhhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch
Confidence 344455555544 78999999999999999988743 4 345777888888999999999886421 1 12222
Q ss_pred Cc-hhhHHHHHHHHHHcCCHHHHHHHHHH-H---HhCCCCCCCccchhHHHHHHHHHHHHhcCC----------------
Q 036731 84 SD-VVTFNVIMDELCKNRKMDEATRLLDL-M---IQGGVRPDAFCEINIVAYGCLIDGLCKIGK---------------- 142 (259)
Q Consensus 84 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------- 142 (259)
.. ......|.+.+--.|.+++|.-...+ + .+.|-... ....+..+...|...|+
T Consensus 92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~-----e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~e 166 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL-----ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAE 166 (639)
T ss_pred hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh-----hhHHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence 21 22333444555555666666543222 1 12222111 22566677777765553
Q ss_pred ----hHHHHHHHHHH----HHcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHH----hcCCC-CcHHHHHHHHHHHH
Q 036731 143 ----LKNARELSQSL----TRAGL-MPNVVTYNITIHALCNDEQMDKAHDLFLDME----VKGVA-PNCVIFTTLMPSFI 208 (259)
Q Consensus 143 ----~~~a~~~~~~~----~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-p~~~~~~~l~~~~~ 208 (259)
++.|.++|.+= .+.|- -.....|..|...|.-.|+++.|....+.-. +.|-+ .....+..+..++.
T Consensus 167 v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 167 VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 23344444332 12221 1123467777777778899999887665432 22321 22356778888999
Q ss_pred hcCCHHHHHHHHHHHh----hCC-CccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 209 RKNETSKVIELLRSMD----KRN-VMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 209 ~~~~~~~a~~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
-.|+++.|.+.++... +.| -........++...|.-..++++|+.++.+
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999888643 222 123445666788888888888888887754
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.42 Score=35.88 Aligned_cols=145 Identities=13% Similarity=0.054 Sum_probs=78.6
Q ss_pred HHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh
Q 036731 60 GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139 (259)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (259)
.....|++.+|...|......... +...-..+..+|...|+.+.|..++..+....-.. .......-|..+.+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~------~~~~l~a~i~ll~q 215 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK------AAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh------HHHHHHHHHHHHHH
Confidence 345667777777777776655322 34445556777777777777777777654332111 11222233445555
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCH
Q 036731 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG-VAPNCVIFTTLMPSFIRKNET 213 (259)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~ 213 (259)
.....+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+...+ -.-|...-..|+..+.-.|.-
T Consensus 216 aa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 216 AAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 55555555554444432 1144455556666677777777777665555441 122344555566665555533
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.44 Score=35.75 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=106.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (259)
.......|++.+|...|......... +...-..+..+|...|+.+.|..++..+...--.........-|..+
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34566789999999999998875433 33678889999999999999999999876542221222223344555
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-ccchHHHHHHHHHHHHhcccCCc
Q 036731 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV-MPYASILSIIVDLLVKNEISLNS 251 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a 251 (259)
.+.....+..++-++.-.. +-|...-..+...+...|+.+.|.+.+-.+.+++. .-+...-..+++.+.--|..+.+
T Consensus 214 ~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 214 EQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 5555555555555555543 33667777788889999999999988877665422 23566777788888877766554
Q ss_pred chhh
Q 036731 252 IPQF 255 (259)
Q Consensus 252 ~~~~ 255 (259)
...+
T Consensus 292 ~~~~ 295 (304)
T COG3118 292 VLAY 295 (304)
T ss_pred HHHH
Confidence 4433
No 244
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.93 E-value=0.32 Score=33.42 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=13.6
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHHcCCH
Q 036731 74 FIEMMDRGLQSDVVTFNVIMDELCKNRKM 102 (259)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (259)
+..+.+.+++|+...+..+++.+.+.|++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33334444444444455555555554443
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.86 E-value=0.046 Score=28.09 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
.++..+...|...|++++|.+++++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35566666677777777777777776665
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.73 Score=39.65 Aligned_cols=174 Identities=15% Similarity=0.182 Sum_probs=103.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHH----HHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI----HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
.-|....+...++-|..+-+.- + .+..+...+. ..+.+.|++++|...|-+-... +.|.. ++.-|
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kf 407 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKF 407 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHh
Confidence 3455555666666666655332 2 2333333333 4456789999988887766644 33322 55556
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (259)
.........-.+++.+.+.|+... ..-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla~~-------dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLANS-------DHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccccc-------hhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 666677777778888888877643 566788888999888888777766544 2221 111344556666666
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036731 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223 (259)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (259)
-.++|..+-.+... +......++ -..+++++|.+.++.+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66666655443322 233333333 3456677777766544
No 247
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.81 E-value=0.96 Score=37.98 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccc-----------h
Q 036731 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY-----------A 232 (259)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~ 232 (259)
+...+..-+-+...+..|-++|.+|-+. ..++......++|.+|..+-+...+. .|+ .
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333333344445555666666555422 23455556667777776666654432 111 1
Q ss_pred HHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 233 SILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 233 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
.-|...-++|.+.|+..||..+++++
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 22344455666666666666666543
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.81 E-value=0.5 Score=34.72 Aligned_cols=164 Identities=10% Similarity=0.061 Sum_probs=105.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (259)
...|+.-+ .-.+.|++++|.+.|+.+...-.... ....+...++-++.+.+++++|...+++....-......-|
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~----~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSP----YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCc----ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 33444333 34578999999999999985432221 24577888889999999999999999998876322222344
Q ss_pred HHHHHHHHh-------cCChh---HHHHHHHHHHhc----CCCCcHHHHH------------HHHHHHHhcCCHHHHHHH
Q 036731 166 NITIHALCN-------DEQMD---KAHDLFLDMEVK----GVAPNCVIFT------------TLMPSFIRKNETSKVIEL 219 (259)
Q Consensus 166 ~~li~~~~~-------~~~~~---~a~~~~~~~~~~----~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~ 219 (259)
...|.+++. ..+.. .|..-|++++.. ...||...-- .+.+.|.+.|.+-.|..-
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR 189 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINR 189 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 444554442 22333 444555555544 2223332211 244678899999999999
Q ss_pred HHHHhhCC--CccchHHHHHHHHHHHHhcccCCcchh
Q 036731 220 LRSMDKRN--VMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 220 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
+++|++.- ..-....+..+..+|...|..++|.+.
T Consensus 190 ~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 190 FEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 99998761 122344566788889999988777553
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.45 Score=40.83 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=93.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD 103 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (259)
.-+.+.|++++|...|-+-... +.|+ .+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 4455789999999888776543 2332 3556667777788888889999998876 5555678999999999998
Q ss_pred HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 036731 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183 (259)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (259)
+..++.+... .|..- .-....+..+.+.+-.++|..+-..... +......+ +...+++++|++
T Consensus 449 kL~efI~~~~-~g~~~--------fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~ 511 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEWF--------FDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALR 511 (933)
T ss_pred HHHHHHhcCC-Cccee--------eeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHH
Confidence 8777766543 22211 2345667777777777777776665443 22222222 345567778777
Q ss_pred HHHHH
Q 036731 184 LFLDM 188 (259)
Q Consensus 184 ~~~~~ 188 (259)
.+..+
T Consensus 512 yi~sl 516 (933)
T KOG2114|consen 512 YISSL 516 (933)
T ss_pred HHhcC
Confidence 77654
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.75 E-value=0.56 Score=36.37 Aligned_cols=226 Identities=8% Similarity=0.009 Sum_probs=121.8
Q ss_pred hcCChHHHHHHHHHHhhC--CCCCchHhHHHHHHHHhhcCChhHHHHHHH----HHHHcC-CCCchhhHHHHHHHHHHcC
Q 036731 28 KEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNEAEYLFI----EMMDRG-LQSDVVTFNVIMDELCKNR 100 (259)
Q Consensus 28 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~~~ 100 (259)
...+.++|+..|..-..+ ...---.++..+..+.++.|.+++++..-- -..+.. -..--..|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777665543 111123345556667777777776544321 111110 0011234445555555555
Q ss_pred CHHHHHHHHHHHHh-CCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHh
Q 036731 101 KMDEATRLLDLMIQ-GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG-----LMPNVVTYNITIHALCN 174 (259)
Q Consensus 101 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~ 174 (259)
++.+++.+-..-.. .|..|. +..-.....+..++...+.++++++.|+...+.- ......+|..|-+.|..
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 55555555443221 122221 0112344456677777778888888887765421 11234467778888888
Q ss_pred cCChhHHHHHHHHHHhc----CCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCcc-chHHHHHHHH
Q 036731 175 DEQMDKAHDLFLDMEVK----GVAPN-----CVIFTTLMPSFIRKNETSKVIELLRSMDK----RNVMP-YASILSIIVD 240 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~ 240 (259)
..++++|.-+..+..+. ++.-- ......+.-++...|....|.+..++..+ .|-.+ .......+.+
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 88888887776655432 21111 11222334456667777777777776543 33222 3344556677
Q ss_pred HHHHhcccCCcchhhh
Q 036731 241 LLVKNEISLNSIPQFN 256 (259)
Q Consensus 241 ~~~~~g~~~~a~~~~~ 256 (259)
.|...|+.+.|..-|+
T Consensus 255 IyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHhcccHhHHHHHHH
Confidence 7788888877666554
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.72 E-value=0.049 Score=27.99 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDE 45 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 45 (259)
|..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444444555555555555555555443
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.72 E-value=0.32 Score=31.77 Aligned_cols=93 Identities=18% Similarity=0.035 Sum_probs=71.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHH---HHHHHHHcC
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV---IMDELCKNR 100 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~ 100 (259)
-+.+..|+.+.|++.|.+...- .+-....||.-..++.-.|+.++|++=+++..+..-..+...+.. -...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567899999999999998765 345788999999999999999999999988876532324333333 334577788
Q ss_pred CHHHHHHHHHHHHhCCC
Q 036731 101 KMDEATRLLDLMIQGGV 117 (259)
Q Consensus 101 ~~~~a~~~~~~~~~~~~ 117 (259)
+.+.|..=|+..-+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88999888888777664
No 253
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=1.2 Score=38.01 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC----CchHhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN----PNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 79 (259)
..+|..+..-.-..|+++.|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+..
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 345777777777788888888877654333211 1233345555666777777777666665554
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.49 E-value=0.045 Score=26.73 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQ 41 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~ 41 (259)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666655
No 255
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=1.4 Score=37.55 Aligned_cols=108 Identities=9% Similarity=0.156 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
-+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-+++-+..+ ++.-|.-++.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 345555666777888899988887765 4688899999999999999998877765544 245677889999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
.+.|+.++|.+++.+.... . -...+|.+.|++.+|.+.
T Consensus 755 ~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 9999999999988655321 1 466677788888777654
No 256
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.33 E-value=1.1 Score=35.30 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=80.8
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHhhCCCCCchHhHHHHHHH--HhhcCChhHHHHHHHHHHHcCCCCchhh--HHHH
Q 036731 19 YNTIIDGLC--KEGFVDKAKELFLQMKDENINPNVVTYNSLIHG--FCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVI 92 (259)
Q Consensus 19 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 92 (259)
|.+|-.++. -.|+-..|.+.-.+..+. +..|....-.++.+ ..-.|+++.|.+-|+.|.+. |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444433 356666666665554322 23344444445443 34569999999999999863 22221 2233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
.-.-.+.|+.+.|.+.-+......... ...+...+...+..|+|+.|+++++.-...
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l-------~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQL-------PWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCC-------chHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333456788888888887766543322 378889999999999999999999876543
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.21 E-value=0.51 Score=30.93 Aligned_cols=59 Identities=20% Similarity=0.147 Sum_probs=22.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036731 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 192 (259)
.+......|.-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++++.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444443321 2333344444444444444444444444444443
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.21 E-value=0.54 Score=31.28 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=87.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 036731 89 FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168 (259)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (259)
...++..+...+.......+++.+...+. . +...++.++..|++.+. .+....++. ..+......+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~------~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~ 75 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-E------NPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKV 75 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-c------chhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHH
Confidence 34577777788889999999999887753 2 45799999999987643 444444442 1244556668
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHH
Q 036731 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK-NETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244 (259)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (259)
++.|.+.+.++++..++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+..
T Consensus 76 ~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 76 GKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 8888899999999888877632 22233333334 8888888888752 255678888777654
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.17 E-value=0.068 Score=26.05 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 036731 130 YGCLIDGLCKIGKLKNARELSQSL 153 (259)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~ 153 (259)
|..|...|.+.|++++|..+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666666666666666663
No 260
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.10 E-value=0.27 Score=30.05 Aligned_cols=43 Identities=9% Similarity=0.162 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 182 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
.+-++.+....+-|++.+..+.+++|.+.+++..|.++|+-.+
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444555555555555555555555555554443
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=1.2 Score=34.36 Aligned_cols=156 Identities=13% Similarity=0.093 Sum_probs=105.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC
Q 036731 63 YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142 (259)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (259)
..|++.+|-..++++.+. .+.|...+.-.=.+|.-.|+.+.-...++++... -.++. +....+...+.-++...|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dl--p~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADL--PCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCC--cHHHHHHHHHHhhHHHhcc
Confidence 457777888888888876 4557777777788899999988888888888643 12221 0112233344445567899
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 036731 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK---GVAPNCVIFTTLMPSFIRKNETSKVIEL 219 (259)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 219 (259)
+++|++.-++..+.+ +.|.-.-.+....+...|+..++.+++.+-... +-..-.+.|-...-.+...+.++.|.++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999988887764 235555666777777888898888887664332 1111223444555566677999999999
Q ss_pred HHHH
Q 036731 220 LRSM 223 (259)
Q Consensus 220 ~~~~ 223 (259)
|++-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 9763
No 262
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.05 E-value=0.71 Score=31.76 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=85.0
Q ss_pred HHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 036731 35 AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114 (259)
Q Consensus 35 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (259)
..+.++.+.+.+++|+...+..++..+.+.|++.... .+...++-+|.......+-.+. +....+.++--.|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3566667777899999999999999999999876644 4445666666655554443332 233334444333332
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036731 115 GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (259)
. .. ..+..++..+...|++-+|.++.+..... +......++.+..+.++...-..+++-..+
T Consensus 87 R-L~---------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 R-LG---------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred H-hh---------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 00 25677788888888888888888775332 222335566666666666555555554444
No 263
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.00 E-value=1.5 Score=35.21 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=88.6
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCc------hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH--HH
Q 036731 26 LCKEGFVDKAKELFLQMKDENINPN------VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE--LC 97 (259)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 97 (259)
+.+.+++.+|.++|.+..+.. ..+ ...-+.++++|.. ++.+.....+..+.+. .| ...|-.+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 457899999999999987652 212 2334566777765 4566655566566554 22 3344445444 45
Q ss_pred HcCCHHHHHHHHHHHHhC--CCCCCCc------cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCChhhH
Q 036731 98 KNRKMDEATRLLDLMIQG--GVRPDAF------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL----MPNVVTY 165 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~--~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 165 (259)
+.+++.+|.+.+..=... +..+.-. .-+|-..=+..+.++...|++.++..+++++...=. .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899998887665443 2222100 111223335567778899999999999999876533 3677788
Q ss_pred HHHHHHHH
Q 036731 166 NITIHALC 173 (259)
Q Consensus 166 ~~li~~~~ 173 (259)
+.++-.++
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 77554444
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=95.00 E-value=1.5 Score=35.31 Aligned_cols=160 Identities=12% Similarity=0.081 Sum_probs=98.1
Q ss_pred hhH--HHHHHHHHHc-----CCHHHHHHHHHHHH-hCCCCCCCccchhHHHHHHHHHHHHh---------cCChHHHHHH
Q 036731 87 VTF--NVIMDELCKN-----RKMDEATRLLDLMI-QGGVRPDAFCEINIVAYGCLIDGLCK---------IGKLKNAREL 149 (259)
Q Consensus 87 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~ 149 (259)
..| ...+++.... ...+.|..+|.+.. .....|+ ....|..+..++.. ..+..+|.++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-----~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-----KTECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-----cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 445 5555554442 23467888888877 2234444 24555555444432 2235567777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036731 150 SQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC-VIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228 (259)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (259)
.+...+.+.. |......+..+....++++.|..+|++.... .||. .+|......+.-.|+.++|.+.+++..+..+
T Consensus 327 A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 327 LDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 7777777643 7777777777777788899999999998876 4553 4555555566678999999999998766532
Q ss_pred cc-chHHHHHHHHHHHHhcccCCcchhh
Q 036731 229 MP-YASILSIIVDLLVKNEISLNSIPQF 255 (259)
Q Consensus 229 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 255 (259)
.- -..+....++.|+.++ .++|+++|
T Consensus 404 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 404 RRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred hhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 21 2223333444555443 35555544
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.85 E-value=0.97 Score=32.29 Aligned_cols=167 Identities=15% Similarity=0.025 Sum_probs=75.2
Q ss_pred HhHHHHHHHHhhcCChhHHHHHHHHHHHc-CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 036731 52 VTYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130 (259)
Q Consensus 52 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (259)
..+......+...+++..+...+...... ........+......+...+.+..+...+.........+. ...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 132 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-------LAE 132 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-------hHH
Confidence 44444445555555555555555544431 1222334444444455555555555555555544322221 112
Q ss_pred HHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Q 036731 131 GCLID-GLCKIGKLKNARELSQSLTRAGL--MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP-NCVIFTTLMPS 206 (259)
Q Consensus 131 ~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 206 (259)
..... .+...|+++.+...+.+...... ......+......+...++.+.+...+....... .. ....+..+...
T Consensus 133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 211 (291)
T COG0457 133 ALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLL 211 (291)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHH
Confidence 22222 45555555555555555533211 0112222222223344555555555555555441 11 23444455555
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 036731 207 FIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~ 226 (259)
+...+.++.+...+......
T Consensus 212 ~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 212 YLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHHcccHHHHHHHHHHHHhh
Confidence 55555555555555555443
No 266
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.81 E-value=0.52 Score=33.34 Aligned_cols=78 Identities=17% Similarity=0.109 Sum_probs=46.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCccchHHHHHHHHHHHHhccc
Q 036731 172 LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK---RNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+ .+-.+++..+.+|+..+.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 566666666666554445555555555554 4566777777766553 23356677777777777777776
Q ss_pred CCc
Q 036731 249 LNS 251 (259)
Q Consensus 249 ~~a 251 (259)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 655
No 267
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.74 E-value=2.2 Score=35.96 Aligned_cols=198 Identities=15% Similarity=0.138 Sum_probs=108.2
Q ss_pred ccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHH-----HHHHHhhcCChhHHHHHHHHHHHcCC
Q 036731 8 FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS-----LIHGFCYANDGNEAEYLFIEMMDRGL 82 (259)
Q Consensus 8 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~ 82 (259)
-.+|..|+... +...++-.|++.+|-++|.+--.++ .-...|+- ...-+...|+.++-..+.++-.+.
T Consensus 627 k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W-- 699 (1081)
T KOG1538|consen 627 KKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW-- 699 (1081)
T ss_pred HhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--
Confidence 34455566543 3455677888888888886542220 01111111 112233344444333333222111
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHH------HHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 83 QSDVVTFNVIMDELCKNRKMDEATRLLD------LMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
..+..-=.+....+...|+.++|..+.- -+.+.+.+.+. .+..+...+...+.+...+..|.++|..|-+.
T Consensus 700 Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~---~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 700 ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK---AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch---hhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 0011111223445556677666655432 11122212211 13355666666666777788888898887542
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV-----------IFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
..+++.....+++++|..+-++..+. .||+. -|...-.+|.+.|+..+|.++++++..
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34677778899999999998877654 34432 233344678889999999999998865
Q ss_pred C
Q 036731 226 R 226 (259)
Q Consensus 226 ~ 226 (259)
.
T Consensus 846 n 846 (1081)
T KOG1538|consen 846 N 846 (1081)
T ss_pred h
Confidence 4
No 268
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.73 E-value=0.57 Score=29.04 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHH
Q 036731 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241 (259)
Q Consensus 180 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (259)
+..+-++.+....+-|++.+..+.+++|.+.+++..|.++|+-++.+ +.+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 44555555666667777777777777777777777777777766643 22223356655543
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.64 E-value=0.96 Score=31.27 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-h
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV-T 164 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 164 (259)
...|...++ +.+.+..++|+.-|..+.+.|...-+ +-.-..........|+...|...|.++-.....|-.. -
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Yp-----vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd 132 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYP-----VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD 132 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcch-----HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH
Confidence 344544444 34567789999999999988876432 2333444556678899999999999987765444433 1
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc
Q 036731 165 YNITIH--ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP 230 (259)
Q Consensus 165 ~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 230 (259)
...|=. .+...|.++....-.+-+-..+-+.-...-..|.-+-.+.|++..|.+.|.++.+..-.|
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 222222 345788888888877777655544444455667777789999999999999987644344
No 270
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.26 Score=37.29 Aligned_cols=109 Identities=17% Similarity=0.286 Sum_probs=79.0
Q ss_pred cccccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC
Q 036731 5 NREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81 (259)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 81 (259)
.+-|.+|...++.+-..++..-....+++.+...+-+++.+ -..|+... ...++.+ ..-++++++.++..=.+-|
T Consensus 53 ~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYG 130 (418)
T KOG4570|consen 53 DKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYG 130 (418)
T ss_pred hhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhc
Confidence 34566777777777777777777788899998888777654 11222221 2223322 3346778888888888899
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 036731 82 LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
+-||..+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 131 iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 131 IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887776643
No 271
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.63 E-value=0.77 Score=30.12 Aligned_cols=124 Identities=10% Similarity=0.190 Sum_probs=66.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C----------------C
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-G----------------L 158 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----------------~ 158 (259)
..-.|..++..++..+..... +..-+|.+|--....-+-+-..++++.+-+. + .
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---------ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~ 82 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---------NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR 82 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT
T ss_pred HHHhchHHHHHHHHHHHcCcC---------CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh
Confidence 344677888888887776532 2244444443333333333333333333211 0 0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 036731 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229 (259)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (259)
..+.......+......|.-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++++.-+.|++
T Consensus 83 n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 83 NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 1133344555666777777777777777776432 566777777888888888888888888888777764
No 272
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=2 Score=34.10 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=109.7
Q ss_pred CCHHHHHHHH-HHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh----
Q 036731 14 PNTVTYNTII-DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT---- 88 (259)
Q Consensus 14 ~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 88 (259)
|...+|..+- ..+.-.|++++|.++--..++.. ..+......--.++...++.+.+..-|++.+..+ |+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH
Confidence 4445555443 34556788888888877766542 1122222222234455678888888888887653 33322
Q ss_pred ---------HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 036731 89 ---------FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159 (259)
Q Consensus 89 ---------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (259)
+..=.+-..+.|.+..|.+.|.+.+.. .|+. ..++...|........+.|+.++|+.--+...+.+..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i--dP~n-~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI--DPSN-KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC--Cccc-cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 122223356789999999999887764 4443 4667788999999999999999999888887765211
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
-...|..-..++...++|++|.+-++...+.
T Consensus 320 -yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 320 -YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122333334555678888888888887765
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=1.4 Score=32.30 Aligned_cols=201 Identities=14% Similarity=0.132 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCch------HhHHHHHHHHhhcCChhHHHHHHHHHH----HcCCCCc
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV------VTYNSLIHGFCYANDGNEAEYLFIEMM----DRGLQSD 85 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 85 (259)
...|..-..+|...+++++|...+.+..+- .+-|. ..|...+-..-....+.++..++++.. +.| .|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spd 108 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPD 108 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccc
Confidence 345666677888889999998877776531 12222 233333444445556666777776553 333 334
Q ss_pred hhhHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC
Q 036731 86 VVTFNVIMD--ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA----GLM 159 (259)
Q Consensus 86 ~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 159 (259)
..... |-. -....-++++|+++|++....-...+. .+.-...+...-+.+.+...+++|-..+.+-... .--
T Consensus 109 tAAma-leKAak~lenv~Pd~AlqlYqralavve~~dr-~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 109 TAAMA-LEKAAKALENVKPDDALQLYQRALAVVEEDDR-DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred hHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHhccch-HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 32211 111 123455677888888765432111110 1112345556666677777777776665543211 111
Q ss_pred CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036731 160 PNV-VTYNITIHALCNDEQMDKAHDLFLDMEVK---GVAPNCVIFTTLMPSFIRKNETSKVIELLR 221 (259)
Q Consensus 160 ~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (259)
++. ..|-..|-.+....++..|...++.--+. .-.-+..+...|+.+| ..|+.+++.+++.
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 121 23455556666777899999998874433 2233567788888887 5688888877664
No 274
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=1.2 Score=33.91 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=77.5
Q ss_pred CCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC---CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 036731 45 ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG---LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121 (259)
Q Consensus 45 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 121 (259)
.|.+.+..+...++.......+++.+...+-+++.+- ..|+.. -.+.++.|.+ -++++++.++..=++.|+.|+.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3666677777777777777888999999888887542 222222 2223444333 3677899998888899999865
Q ss_pred ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
.+++.+|+.+.+.+++.+|.++...|...
T Consensus 136 ------f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 ------FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ------hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999998887654
No 275
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.34 E-value=1.3 Score=31.59 Aligned_cols=204 Identities=13% Similarity=0.000 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
...+......+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 566777888888999999999888887752 234466677777788888899999999999888764443 222333333
Q ss_pred -HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 95 -ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 95 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
.+...|+++.|...+.+.......... ....+......+...++.+.+...+..............+..+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNE----LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccc----hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 788999999999999998552210011 234555555557788999999999999887632213567788888888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPN-CVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
..++++.+...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 214 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 214 KLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999998876 343 344444555555777899999998888765
No 276
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.30 E-value=0.93 Score=29.70 Aligned_cols=94 Identities=16% Similarity=0.025 Sum_probs=59.1
Q ss_pred HHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh
Q 036731 60 GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139 (259)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (259)
+.+..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++=+++..+..-... ..-...|..-...|..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t---rtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT---RTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHHH
Confidence 4566778888888877777652 33566777777777777777777777766654322111 1122344444455666
Q ss_pred cCChHHHHHHHHHHHHcC
Q 036731 140 IGKLKNARELSQSLTRAG 157 (259)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~ 157 (259)
.|+-+.|..=|+...+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 777777777777666655
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.07 E-value=1.2 Score=30.28 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=66.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 036731 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT-IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 211 (259)
++..-.+.++.+++..++..+.-. .|.......+ ...+...|++.+|..+|+++.+. .|....-..|+..|....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHc
Confidence 334456778999999999998875 4444333222 33467899999999999998876 455555556665555443
Q ss_pred CHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccC
Q 036731 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249 (259)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 249 (259)
+-..=...-.++.+.+..|+. ..++..+....+..
T Consensus 92 ~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~ 126 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPDA---RALVRALLARADLE 126 (160)
T ss_pred CChHHHHHHHHHHhcCCChHH---HHHHHHHHHhcccc
Confidence 322333344556666544433 33444554444443
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.02 E-value=0.026 Score=37.82 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=59.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (259)
++..+.+.+.+.....+++.+...+...+...++.++..|++.++.+...++++ . .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~----~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---T----SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---S----SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---c----ccccCHHHHHHHHHhcch
Confidence 567777788888888888888876656678888899999999888788877776 1 122333457777777777
Q ss_pred HHHHHHHHHHH
Q 036731 102 MDEATRLLDLM 112 (259)
Q Consensus 102 ~~~a~~~~~~~ 112 (259)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777766654
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.99 E-value=3.5 Score=35.22 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh-CCCccchHHHHHHHHHHHHhccc
Q 036731 202 TLMPSFIRKNETSKVIELLRSMDK-RNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
.|..--..-|..+.|.+.--.+.+ ..+-|...+|+.+.-+-+....+
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 333444456777777766555554 24567777787766555544444
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.98 E-value=3.3 Score=34.91 Aligned_cols=150 Identities=11% Similarity=0.021 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHcCCCCchhhH-HHHHHH-HHHcCCHHHHHHHHHHHHh-------CCCCCCCccchhHHHHHHHHHHH
Q 036731 67 GNEAEYLFIEMMDRGLQSDVVTF-NVIMDE-LCKNRKMDEATRLLDLMIQ-------GGVRPDAFCEINIVAYGCLIDGL 137 (259)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~ 137 (259)
...+.++++...+.|..-..... .....+ +....+.+.|+.+|+...+ .+.. .....+..+|
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---------~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP---------PAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC---------ccccHHHHHH
Confidence 46788888888877633111111 112222 4466789999999998876 4422 4566777777
Q ss_pred HhcC-----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH--Hh
Q 036731 138 CKIG-----KLKNARELSQSLTRAGLMPNVVTYNITIHALCN-DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF--IR 209 (259)
Q Consensus 138 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--~~ 209 (259)
.+.. +.+.|..++....+.|.+ +....-..+..... ..+...|.++|...-..|..+ ...+..++... ..
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGV 376 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCc
Confidence 7643 667799999998888743 44333222222222 245789999999988887432 22222222111 13
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 036731 210 KNETSKVIELLRSMDKRN 227 (259)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~ 227 (259)
..+...|..++++.-++|
T Consensus 377 ~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCCHHHHHHHHHHHHHcc
Confidence 346788888888888877
No 281
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.93 E-value=0.81 Score=28.08 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
+.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++..+.+ +..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 45567777888888888999999999999999999999999999988754 1224456666554
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.86 E-value=2.5 Score=33.03 Aligned_cols=204 Identities=7% Similarity=0.018 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH----HhhC-CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc-CCCCc---hhh
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQ----MKDE-NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-GLQSD---VVT 88 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~----~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~ 88 (259)
+|..+..+.++.|.+++++..--. ..+. .-..--..|-.+.+++.+.-++.+++.+-..-... |..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 344555666666666665433211 1111 00111233444555555555555666555443321 22221 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCChh-
Q 036731 89 FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR----AGLMPNVV- 163 (259)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~- 163 (259)
..++..+....+.++++++.|+...+.....+. ......+|..+...|.+..|+++|.-+..+..+ .++. |..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~ 202 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSL 202 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhH
Confidence 345667777788899999999877643222111 112447899999999999999999887766543 2332 221
Q ss_pred hHH-----HHHHHHHhcCChhHHHHHHHHHHh----cCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036731 164 TYN-----ITIHALCNDEQMDKAHDLFLDMEV----KGVAP-NCVIFTTLMPSFIRKNETSKVIELLRSM 223 (259)
Q Consensus 164 ~~~-----~li~~~~~~~~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (259)
-|. .+.-++...|..-.|.+..++..+ .|-.| .......+.+.|...|+.+.|+.-+++.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222 233445567777777777766543 34332 2234556678888899998888877754
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.48 E-value=4.4 Score=36.73 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=43.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHH
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV--TYNITIH 170 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~ 170 (259)
...+.....+++|.-.|+..- -..-.+.+|..+|+|.+|+.+..++.... +.. +-..|..
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~G---------------klekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCG---------------KLEKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVS 1007 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhc---------------cHHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHH
Confidence 334445566666666665432 12234566667777777777766654321 211 1244556
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 036731 171 ALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~ 190 (259)
-+...++.-+|-++..+...
T Consensus 1008 ~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHcccchhHHHHHHHHhc
Confidence 66666666666666655543
No 284
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.46 E-value=1.3 Score=31.42 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=56.4
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc---CCCCchhhHHHHHHHHHHcCCHH
Q 036731 27 CKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR---GLQSDVVTFNVIMDELCKNRKMD 103 (259)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 103 (259)
.+.|+ +.|.+.|-.+...+.--++.....|...| ...+.+++.+++....+. +-.+|+..+..|...+.+.++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 56788888887776554555555555444 478899999998887643 34678889999999999999988
Q ss_pred HHH
Q 036731 104 EAT 106 (259)
Q Consensus 104 ~a~ 106 (259)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 773
No 285
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.39 E-value=0.28 Score=24.45 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMK 43 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 43 (259)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455666666666666666666666554
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.37 E-value=6.1 Score=35.92 Aligned_cols=87 Identities=11% Similarity=0.091 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
..|.+....+.....+++|.-.|+..-+ ...-+.+|..+|+|.+|+.+..++.... .--..+-..|+.-+
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHH
Confidence 4555556666677788888877776433 2335777888888888888887765321 00111225667777
Q ss_pred HhcCCHHHHHHHHHHHh
Q 036731 208 IRKNETSKVIELLRSMD 224 (259)
Q Consensus 208 ~~~~~~~~a~~~~~~~~ 224 (259)
...+++-+|.+++.+..
T Consensus 1010 ~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHcccchhHHHHHHHHh
Confidence 78888888888777654
No 287
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.27 E-value=0.31 Score=24.23 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777766543
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.26 E-value=3.2 Score=32.46 Aligned_cols=193 Identities=12% Similarity=0.080 Sum_probs=93.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC----CchhhHHHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ----SDVVTFNVIMDELC 97 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 97 (259)
...+.-+.|+++...+........ .++...+..+... +.++++++....+.....-.. .....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356677888888866665555432 2344455554433 788888888888877654111 11223333333344
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHc-----C----CCCChhhHHH
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK-IGKLKNARELSQSLTRA-----G----LMPNVVTYNI 167 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~-----~----~~~~~~~~~~ 167 (259)
+...+.+..++.+-....... ......++..... ......-..+++.+... + ......+|..
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~--------~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~ 151 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN--------PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLK 151 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc--------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 444444444443332221111 1222222222211 11112222222222210 1 1223345666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 168 TIHALCNDEQMDKAHDLFLDMEVKGVAP---NCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
+...+.+.|+++.|...+..+...+..+ .+...-.-.+.+...|+..+|...+++..+.
T Consensus 152 ~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 152 FAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666667777777777776666532111 2233333445555666777777777666653
No 289
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.25 E-value=3.9 Score=33.41 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=82.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC---CC---------------
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG---LQ--------------- 83 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~--------------- 83 (259)
+|.-.-+..+...-.++-.+..+. .|+-.+--.++ +--......++.+++++..+.| ..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 444444555565555565555543 34432222222 2223455677777777765432 00
Q ss_pred --Cc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036731 84 --SD----VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157 (259)
Q Consensus 84 --~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (259)
.+ ..+-..+..++-+.|+.++|.+.++++.+.....+ ...+...|+.++...+.+.++..++.+..+..
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-----~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-----NLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-----hhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 01 11223356666778999999999999876532212 45688899999999999999999998875433
Q ss_pred CCCCh--hhHHHHH
Q 036731 158 LMPNV--VTYNITI 169 (259)
Q Consensus 158 ~~~~~--~~~~~li 169 (259)
. |.. ..|+..+
T Consensus 326 l-pkSAti~YTaAL 338 (539)
T PF04184_consen 326 L-PKSATICYTAAL 338 (539)
T ss_pred C-CchHHHHHHHHH
Confidence 2 233 3455544
No 290
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.07 E-value=3 Score=31.61 Aligned_cols=198 Identities=12% Similarity=0.085 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC--------CCCCc-----hHhHHHHHHHHhhcCChhH---HHHHHHHHHHcC
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDE--------NINPN-----VVTYNSLIHGFCYANDGNE---AEYLFIEMMDRG 81 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~-----~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~ 81 (259)
.||.-...+.+..+++.|..++++..+. ...|+ ..+...++.+|...+..+. |.++++.+....
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 3454444444443888888777765432 12222 3455667778877777554 556666665442
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHH---HhcCChHHHHHHHHHHHHcCC
Q 036731 82 LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL---CKIGKLKNARELSQSLTRAGL 158 (259)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~ 158 (259)
.-.+.++..-+..+.+.++.+.+.+++.+|...-..++ ..+..++..+ .... ...|...+..+....+
T Consensus 118 -~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e-------~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~ 188 (278)
T PF08631_consen 118 -GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE-------SNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRF 188 (278)
T ss_pred -CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc-------chHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHh
Confidence 22355565667777778999999999999987643343 3455555554 3333 3456666666655444
Q ss_pred CCChh-hHHHHH--HHHH--hcCC------hhHHHHHHHHHHhc-CCCCcHHHHHHH-------HHHHHhcCCHHHHHHH
Q 036731 159 MPNVV-TYNITI--HALC--NDEQ------MDKAHDLFLDMEVK-GVAPNCVIFTTL-------MPSFIRKNETSKVIEL 219 (259)
Q Consensus 159 ~~~~~-~~~~li--~~~~--~~~~------~~~a~~~~~~~~~~-~~~p~~~~~~~l-------~~~~~~~~~~~~a~~~ 219 (259)
.|... ....++ ..+. ..++ .+....++..+... +.+.+..+-.++ ...+.+.++++.|.++
T Consensus 189 ~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w 268 (278)
T PF08631_consen 189 KSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEW 268 (278)
T ss_pred CCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 44443 111111 1111 2111 34444445533322 334444443332 2345578999999999
Q ss_pred HHHHh
Q 036731 220 LRSMD 224 (259)
Q Consensus 220 ~~~~~ 224 (259)
++-..
T Consensus 269 ~~~al 273 (278)
T PF08631_consen 269 YELAL 273 (278)
T ss_pred HHHHH
Confidence 88543
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.03 E-value=0.17 Score=24.29 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=13.1
Q ss_pred chhhHHHHHHHHHHcCCHHHHH
Q 036731 85 DVVTFNVIMDELCKNRKMDEAT 106 (259)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~ 106 (259)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666666666666666553
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.97 E-value=0.39 Score=22.72 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKD 44 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 44 (259)
+|..+...+...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555544
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.71 E-value=0.021 Score=38.30 Aligned_cols=110 Identities=9% Similarity=0.066 Sum_probs=71.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 211 (259)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 456777778888888888888887665556778888888888888778887777611 1133345677778888
Q ss_pred CHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
.++++.-++.++....- .+..+...++++.|++++.+
T Consensus 85 l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~ 121 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK 121 (143)
T ss_dssp SHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG
T ss_pred hHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh
Confidence 88888887766543211 11124455666666665554
No 294
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.41 E-value=3.7 Score=31.01 Aligned_cols=57 Identities=4% Similarity=-0.034 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChhHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALCNDEQMDKAHDL 184 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~ 184 (259)
.+...++..++..++|.+-.++|+..... +..-|...|..+|......|+..-...+
T Consensus 203 ~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 203 NVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 44445555555555555555555544333 3333444555555555555554433333
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.41 E-value=0.51 Score=22.18 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKD 44 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 44 (259)
.|..+...+.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555543
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.41 E-value=0.6 Score=22.04 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
.+|..+..+|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666666667777777777777666553
No 297
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.28 E-value=5.2 Score=32.36 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKD 44 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 44 (259)
+.+|..++....+.++..+|.+.+.-+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 56788888999999999999888877654
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.23 E-value=0.17 Score=24.31 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHHHhcccCCcc
Q 036731 231 YASILSIIVDLLVKNEISLNSI 252 (259)
Q Consensus 231 ~~~~~~~l~~~~~~~g~~~~a~ 252 (259)
+...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4445555555555555555443
No 299
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.22 E-value=0.64 Score=23.89 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=14.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 203 LMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
|..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4455666666666666666665443
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=6.9 Score=32.94 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSL 153 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (259)
.-|..|.++....+++..|.+.|...
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 44555555555555555555555443
No 301
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.87 E-value=6.2 Score=32.35 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=32.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRAGLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (259)
.+..++-+.|+.++|.+.+++|.+.... -.......|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444555566666666666666543211 1223455566666666666666666666543
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.66 E-value=3.1 Score=28.43 Aligned_cols=16 Identities=31% Similarity=0.354 Sum_probs=6.7
Q ss_pred HHcCCHHHHHHHHHHH
Q 036731 97 CKNRKMDEATRLLDLM 112 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~ 112 (259)
...|++.+|..+|+.+
T Consensus 55 i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 55 IVRGDWDDALRLLREL 70 (160)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3344444444444443
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.54 E-value=2.2 Score=26.55 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 036731 69 EAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114 (259)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (259)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555566666666777777777777777777777777777777663
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.54 E-value=0.8 Score=21.45 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
..+..+..++...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34556666667777777777777666553
No 305
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.43 E-value=4.8 Score=30.26 Aligned_cols=91 Identities=9% Similarity=-0.012 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH--
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL-- 96 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 96 (259)
...=|++++..+++.+++...-+-.+..-+.........|-.|.+.+.+..+.++-....+..-.-+...|..+...|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 334579999999999999887666544222334455666777899999999999888777542222334466665555
Q ss_pred ---HHcCCHHHHHHHH
Q 036731 97 ---CKNRKMDEATRLL 109 (259)
Q Consensus 97 ---~~~~~~~~a~~~~ 109 (259)
.-.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 4579999998887
No 306
>PRK11906 transcriptional regulator; Provisional
Probab=91.41 E-value=6.7 Score=31.85 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHH-cCCCCc-hhhHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHH
Q 036731 67 GNEAEYLFIEMMD-RGLQSD-VVTFNVIMDELCK---------NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135 (259)
Q Consensus 67 ~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (259)
.+.|+.+|.+... +...|+ ...|..+..++.. ..+..+|.+.-++..+.+. + |......+..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~--~-----Da~a~~~~g~ 346 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT--V-----DGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC--C-----CHHHHHHHHH
Confidence 4567777777772 223444 3333333333221 2234456666666655432 2 5567777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcC
Q 036731 136 GLCKIGKLKNARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC---VIFTTLMPSFIRKN 211 (259)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~ 211 (259)
+....++++.|...|++....+ || ..+|....-.+.-.|+.++|.+.+++..+. .|.. ......++.|.. .
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~-~ 421 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVP-N 421 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcC-C
Confidence 7777777888888888877753 33 345555555556678888888888876554 3332 223333334444 4
Q ss_pred CHHHHHHHHHH
Q 036731 212 ETSKVIELLRS 222 (259)
Q Consensus 212 ~~~~a~~~~~~ 222 (259)
..+.|.+++-+
T Consensus 422 ~~~~~~~~~~~ 432 (458)
T PRK11906 422 PLKNNIKLYYK 432 (458)
T ss_pred chhhhHHHHhh
Confidence 55666666643
No 307
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.40 E-value=7.2 Score=32.17 Aligned_cols=167 Identities=13% Similarity=0.105 Sum_probs=110.7
Q ss_pred CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhH
Q 036731 48 NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127 (259)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+.|.....+++..+.......-+..+..+|..-| -+...+-.++.+|... ..+.-..+|+++.+..+. |+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-------Dv 132 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-------DV 132 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-------hH
Confidence 4456666777777888888888888888888764 3567788888888888 557788888888876654 33
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCcHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-----PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFT 201 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~ 201 (259)
..-..|...|-+ ++.+.+...|.+....=++ .-...|..+... -..+.+..+.+..++... |...-...+.
T Consensus 133 v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 133 VIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 444444444444 7888888888777654211 012245555442 234566777776666543 4444455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 202 TLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
-+...|....++.+|.+++..+.+.+
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhc
Confidence 66677888888888888888776543
No 308
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.38 E-value=3.4 Score=29.89 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK--GVAPNCVIFTTLMPS 206 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~ 206 (259)
+.+.-++.+.+.+.+++++...++-.+... .|..+-..+++.++-.|++++|..-++-.-.. ...+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556667777888888888877776642 25556677788888888888888776655443 123334555555554
No 309
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.02 E-value=6.8 Score=31.19 Aligned_cols=179 Identities=12% Similarity=0.113 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc---------CCCCc
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR---------GLQSD 85 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 85 (259)
..+.-+...|..+|+++.|++.|.+.+.- ..+-....|-.+|....-.|+|..+..+..+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 45677888999999999999999886643 12334566777788888889998888887776654 12222
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHH-----HHHHHHcCCC
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMI-QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL-----SQSLTRAGLM 159 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~ 159 (259)
...+..+...+.+ ++..|.+.|-... .....|....+.|+.+|. .+.+.+-.++-+.-..+ |+.+.+.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 3333334433333 6666665553332 111111111122444443 33333333333222222 2333332
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCcHHHHHHHH
Q 036731 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-----GVAPNCVIFTTLM 204 (259)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~ 204 (259)
.+..+..+..-| .+++..+++++++++.. -+.|++.+.-.+|
T Consensus 305 -~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 305 -EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred -ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 233333333333 35788899999888654 2455555554444
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.60 E-value=4.8 Score=28.76 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=68.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
.-+...|++++|..-|...... .|..+...-...|..-..++.+.+.++.|+.--....+.+.. .......-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 3466789999999999888764 233222334567777778888899999888877777765422 2223333355788
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcH
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNC 197 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~ 197 (259)
+...++.|+.=|+++.+. .|..
T Consensus 180 k~ek~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHh--Ccch
Confidence 888999999999999877 4543
No 311
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.58 E-value=5 Score=29.08 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc--CCCCchhhHHHHHHH
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR--GLQSDVVTFNVIMDE 95 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 95 (259)
|.+..++.+.+.++..+++...++-.+.+ +.|...-..++..++-.|++++|..-++-.-.. ...+...+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45666778888889999998887776663 445666778888999999999998777655443 233445566666654
No 312
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.34 E-value=6.4 Score=29.81 Aligned_cols=132 Identities=13% Similarity=0.103 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHhh-CCCCCchHhHHHHHHHHhh-cC-ChhHHHHHHHHHHH-cCCCCchhhHHHHHHHHHHcCCHHHHHH
Q 036731 32 VDKAKELFLQMKD-ENINPNVVTYNSLIHGFCY-AN-DGNEAEYLFIEMMD-RGLQSDVVTFNVIMDELCKNRKMDEATR 107 (259)
Q Consensus 32 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 107 (259)
+.+|+++|+..-- ..+--|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455566652211 2244567777777777665 22 23333344444432 2456778888899999999999999999
Q ss_pred HHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHH-----HHHcCCCCChhhHHHH
Q 036731 108 LLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS-----LTRAGLMPNVVTYNIT 168 (259)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l 168 (259)
+++..... ..|.. |.+.|..+|......|+..-...+..+ +++.++..+...-..+
T Consensus 224 fW~~~~~~-~~~~~----D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 224 FWEQCIPN-SVPGN----DPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHhccc-CCCCC----CCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 99877644 12322 669999999999999999877777654 2344555444443333
No 313
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=90.31 E-value=3.6 Score=26.80 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=17.7
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 188 MEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 188 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
+...++-|++.+...-+++|.+.+++..|.++|+-+.
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444455555555555555555555555444443
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.30 E-value=0.79 Score=21.25 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=14.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
.+..++.+.|++++|...|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445555556666666666665543
No 315
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.16 E-value=1.2 Score=20.94 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
.+|..+...|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566677777777777777777776655
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.07 E-value=5.5 Score=32.51 Aligned_cols=90 Identities=10% Similarity=-0.029 Sum_probs=45.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 036731 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213 (259)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 213 (259)
...+...|+++.+.+.+....+. +.....+...+++...+.|+++.|..+-.-|....+. +++......-..-..|-+
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLF 407 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHH
Confidence 33445556666666655554432 2223445556666666666666666666666554433 223322222233344555
Q ss_pred HHHHHHHHHHhh
Q 036731 214 SKVIELLRSMDK 225 (259)
Q Consensus 214 ~~a~~~~~~~~~ 225 (259)
+++...|+++..
T Consensus 408 d~~~~~wk~~~~ 419 (831)
T PRK15180 408 DKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHhc
Confidence 666666655543
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.04 E-value=4.3 Score=27.34 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=39.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036731 136 GLCKIGKLKNARELSQSLTRAGLMPNVV---TYNITIHALCNDEQMDKAHDLFLDMEVKG 192 (259)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 192 (259)
.-...++.+++..++..|.-. .|... ++... .+...|++++|..+|+++.+.+
T Consensus 19 ~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 334588999999999998764 34433 33333 4578899999999999998874
No 318
>PHA02875 ankyrin repeat protein; Provisional
Probab=89.98 E-value=3.5 Score=33.22 Aligned_cols=129 Identities=19% Similarity=0.111 Sum_probs=56.9
Q ss_pred ccccccccCCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchH--hHHHHHHHHhhcCChhHHHHHHHHHHHcC
Q 036731 6 REFGVVCKPNTVT--YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVV--TYNSLIHGFCYANDGNEAEYLFIEMMDRG 81 (259)
Q Consensus 6 ~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 81 (259)
.+++.|..|+... ..+.+...++.|+.+-+ +.+.+.|..|+.. .....+...+..|+.+.+..+++ .|
T Consensus 20 ~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~ 91 (413)
T PHA02875 20 RLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LG 91 (413)
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cC
Confidence 3445555554422 23445555667776533 3344445444322 11233445556677766555443 33
Q ss_pred CCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHH
Q 036731 82 LQSDV---VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150 (259)
Q Consensus 82 ~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 150 (259)
...+. ..-.+.+...+..|+.+ +++.+.+.|..++.. +..- .+.+...+..|+.+.+..++
T Consensus 92 ~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~---~~~g-~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 92 KFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIP---NTDK-FSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred CcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCC---CCCC-CCHHHHHHHcCCHHHHHHHH
Confidence 21111 01122334444556543 444445555554321 1111 22334445566665444433
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.86 E-value=0.66 Score=20.54 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQ 151 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~ 151 (259)
....+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455666666666666666654
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.85 E-value=6.3 Score=28.93 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=12.3
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 036731 207 FIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~ 226 (259)
-+..+++.+|.++|++....
T Consensus 164 aa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777666543
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.78 E-value=11 Score=31.84 Aligned_cols=178 Identities=11% Similarity=0.022 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHhhCCCCCchHhHHHHH--HH-HhhcCChhHHHHHHHHHHH-------cCCCCchhhHHHHHHHHHHcC-
Q 036731 32 VDKAKELFLQMKDENINPNVVTYNSLI--HG-FCYANDGNEAEYLFIEMMD-------RGLQSDVVTFNVIMDELCKNR- 100 (259)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 100 (259)
...|.++++...+.|.. .......++ .+ +....+.+.|+.+++...+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45788888888777532 111111122 22 4466789999999998876 44 3335566777777643
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 101 ----KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI---GKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 101 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
+.+.|..++...-..|.. .....+...+... .+...|.++|....+.|.. ..+-.+..+|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~---------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~ 371 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP---------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYE 371 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc---------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHH
Confidence 567799999888877654 2333333333332 4578999999999888753 22222222222
Q ss_pred ----hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 174 ----NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 174 ----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
...+...|..++++..+.| .|...--...+..+.. ++++.+.-.+..+.+.+
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2346788999999988887 3332222222333333 56655555555554443
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.44 E-value=7.8 Score=29.46 Aligned_cols=178 Identities=11% Similarity=0.055 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHH------cCC-----HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh
Q 036731 71 EYLFIEMMDRGLQSDVVTFNVIMDELCK------NRK-----MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139 (259)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (259)
-+..++..+.-......++...+.++.. .|. -.+|+++|.-+.++.-++ .+-+.++..+-.
T Consensus 107 nraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk~--------v~~~~~ie~lwp 178 (361)
T COG3947 107 NRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGKE--------VTSWEAIEALWP 178 (361)
T ss_pred HHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCCc--------ccHhHHHHHHcc
Confidence 3333444333223345566666666651 221 368999999888765443 556667777777
Q ss_pred cCChHHHHHHHHHH-------HH-------------------cCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHhcC
Q 036731 140 IGKLKNARELSQSL-------TR-------------------AGLMPNVVTYNITIHALCND-EQMDKAHDLFLDMEVKG 192 (259)
Q Consensus 140 ~~~~~~a~~~~~~~-------~~-------------------~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~ 192 (259)
..+..+|...+... .. .++.-|..-|...++..... -.++++.++.......
T Consensus 179 e~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgd- 257 (361)
T COG3947 179 EKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGD- 257 (361)
T ss_pred ccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCC-
Confidence 77777776655432 11 02233444455555443332 2355555555544321
Q ss_pred CCC--------c-----HH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhh
Q 036731 193 VAP--------N-----CV----IFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255 (259)
Q Consensus 193 ~~p--------~-----~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 255 (259)
.-| | .. ++....+.|..+|.+.+|.++.++.+..+ +.+...+-.++..+...|+--.|.+-|
T Consensus 258 yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 258 YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 111 1 12 33344567889999999999999998764 457788888999999999988888777
Q ss_pred hcc
Q 036731 256 NRQ 258 (259)
Q Consensus 256 ~~~ 258 (259)
+++
T Consensus 337 ery 339 (361)
T COG3947 337 ERY 339 (361)
T ss_pred HHH
Confidence 765
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.24 E-value=11 Score=31.09 Aligned_cols=184 Identities=9% Similarity=0.050 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
|....-+++..+..+-+..-++.+..+|...| .+-..|..++.+|... ..+.-..+|+++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 56667788999999999999999999999874 4778899999999888 778889999999987554 4554455555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHH
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-GLMPNVVTYNITIHALC 173 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 173 (259)
.|-+ ++.+.+...|..+...-+.... ...-..+|.-+...- ..+.+..+.+...+... |...-...+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q-~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQ-NAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 5555 8888888888887654332110 000113454444322 34677777777777653 43334556666667788
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
...++++|++++..+.+.+ ..|.-.-..++..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 8999999999999888774 33555555555544
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.94 E-value=1.5 Score=20.54 Aligned_cols=27 Identities=7% Similarity=0.103 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQ 114 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (259)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677778888888888888877664
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.94 E-value=1.4 Score=22.71 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=14.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDE 45 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~ 45 (259)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666543
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.85 E-value=11 Score=31.88 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (259)
.-+.+...+.+.|..++|+++- ..|+ . -.....+.|+++.|.++..+.. +..-|..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-------~D~d-------~----rFelal~lgrl~iA~~la~e~~------s~~Kw~~ 671 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-------TDPD-------Q----RFELALKLGRLDIAFDLAVEAN------SEVKWRQ 671 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-------CChh-------h----hhhhhhhcCcHHHHHHHHHhhc------chHHHHH
Confidence 4455666677777777775542 1221 1 1234456788888887766543 4556788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 036731 168 TIHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~ 190 (259)
|..+....+++..|.+.|.+..+
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhcc
Confidence 88888888888888777766543
No 327
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.76 E-value=2.1 Score=25.16 Aligned_cols=53 Identities=11% Similarity=0.173 Sum_probs=36.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHH
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 150 (259)
+..| ...+.++|+..|....+.-..+.. --.++..++.+|+..|++.+++.+-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~----rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDRED----RFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434 566778888888888765444321 3367777888888888888777654
No 328
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.65 E-value=8.7 Score=28.99 Aligned_cols=93 Identities=8% Similarity=-0.016 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
..+..=|.+++..++|.+++...-+.-..--+.........|-.|.+.+++..+.++-.......-.-+...|..+++.|
T Consensus 84 sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 84 SLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 45556688899999999988766554433222344566777778889999998888887777652223334477666655
Q ss_pred Hh-----cCCHHHHHHHH
Q 036731 208 IR-----KNETSKVIELL 220 (259)
Q Consensus 208 ~~-----~~~~~~a~~~~ 220 (259)
.. .|.+++|.++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 54 58888888877
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.35 E-value=11 Score=29.58 Aligned_cols=168 Identities=10% Similarity=0.047 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---C-CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN---I-NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFN 90 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (259)
+...|.++... +.++++++...++.+...- . ......|........+...+.+..++.+-..... .+.....
T Consensus 30 ~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~--~~~~~~~ 105 (352)
T PF02259_consen 30 EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLS--QNPQDLK 105 (352)
T ss_pred hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc--ccHHHHH
Confidence 44455555444 8899999999988876541 0 1122334444444444444444444443332221 1122223
Q ss_pred HHHHHHHH-----cCCHHHHHHHH---HHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--
Q 036731 91 VIMDELCK-----NRKMDEATRLL---DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP-- 160 (259)
Q Consensus 91 ~l~~~~~~-----~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 160 (259)
.++..... ..+++.-..++ ..+...-..+. ....+|..++..+.+.|.++.|...+..+...+...
T Consensus 106 ~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~----~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~ 181 (352)
T PF02259_consen 106 SLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPE----ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES 181 (352)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchh----HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC
Confidence 33332221 22222222222 22222111122 256789999999999999999999999988754221
Q ss_pred -ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036731 161 -NVVTYNITIHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 161 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (259)
++...-.-....-..|+..+|...++....
T Consensus 182 ~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 182 LLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444456666778888999998888776
No 330
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.27 E-value=6.8 Score=27.30 Aligned_cols=139 Identities=15% Similarity=0.098 Sum_probs=87.2
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHH
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV-TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
...|..-+. ..+.+..++|+.-|.++.+.|...-+. ...-........|+-..|...|+++-.....|.. ..-
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-----~rd 132 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-----GRD 132 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-----hhH
Confidence 334444443 356678888999999888876542221 1122334466788889999999988765544432 111
Q ss_pred HHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036731 130 YGCLI--DGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195 (259)
Q Consensus 130 ~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 195 (259)
...|= -.+...|.++......+.+...+-+.-...-..|.-+-.+.|++..|..+|..+....-.|
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22222 2345677888888877777655433334444566666778999999999998887653333
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.21 E-value=18 Score=32.05 Aligned_cols=205 Identities=12% Similarity=0.070 Sum_probs=109.7
Q ss_pred HHHHHHH-HHHhcCChHHHHHHHHHHhhC----CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHH-
Q 036731 18 TYNTIID-GLCKEGFVDKAKELFLQMKDE----NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV- 91 (259)
Q Consensus 18 ~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 91 (259)
.|+.+-. .....|+++.|.++-+..... -..+....+..+..+..-.|++++|..+..+..+..-..+...+..
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3444432 234578899999988887654 1223455566667777888999999998887765433334433332
Q ss_pred --HH--HHHHHcCCH--HHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhh
Q 036731 92 --IM--DELCKNRKM--DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG-KLKNARELSQSLTRAGLMPNVVT 164 (259)
Q Consensus 92 --l~--~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 164 (259)
+. ..+...|+. .+.+..|...........+...+-..++..++.++.+.. ...++..-++........|-...
T Consensus 539 ~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~ 618 (894)
T COG2909 539 SLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSR 618 (894)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHH
Confidence 22 335556633 333334443332211111101123355666666666522 12222222222222222222222
Q ss_pred --HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----cHHHHHHHH--HHHHhcCCHHHHHHHHHH
Q 036731 165 --YNITIHALCNDEQMDKAHDLFLDMEVKGVAP----NCVIFTTLM--PSFIRKNETSKVIELLRS 222 (259)
Q Consensus 165 --~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~--~~~~~~~~~~~a~~~~~~ 222 (259)
+..++......|+.++|...+.++......+ +..+-...+ ......|+...+...+.+
T Consensus 619 ~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 619 LALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2367788888999999999999887653222 222222222 233457888887777765
No 332
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.07 E-value=15 Score=31.68 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=18.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhh
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 63 (259)
+|-.|.|+|++++|.++..+.... .......+...+..|..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 444455555555555555433322 23334444555555544
No 333
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.91 E-value=5.2 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 180 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
+|...|++..+. .|+..+|+.-+...
T Consensus 98 kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 98 KATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 333333333333 45555555555443
No 334
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.70 E-value=10 Score=28.58 Aligned_cols=204 Identities=10% Similarity=0.078 Sum_probs=114.6
Q ss_pred CCCCCchHhHHHHHHHH-hhcCChhHHHHHHHHHHHcCCCCchh---hHHHHHHHHHHcCCHHHHHHHHHHHHh---CCC
Q 036731 45 ENINPNVVTYNSLIHGF-CYANDGNEAEYLFIEMMDRGLQSDVV---TFNVIMDELCKNRKMDEATRLLDLMIQ---GGV 117 (259)
Q Consensus 45 ~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~ 117 (259)
++..||+..-|..-.+- .+..++++|+.-|++..+........ ....++....+.+++++....+.++.. ..+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 35566666555443322 23346777888887776543222333 334467778888888888777777642 222
Q ss_pred CCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036731 118 RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT----RAG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 192 (259)
..+. +....|++++......+.+.-..+++.-. +.. -+.=-.|-+.+...|...+++.+...+++++....
T Consensus 100 TrNy----SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 100 TRNY----SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred hccc----cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 2221 34667777777776666655555544322 211 00001133556677788888888888888876431
Q ss_pred C----C-------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCccchHHHHHHHHH----HHHhcccCCcc
Q 036731 193 V----A-------PNCVIFTTLMPSFIRKNETSKVIELLRSMDKR-NVMPYASILSIIVDL----LVKNEISLNSI 252 (259)
Q Consensus 193 ~----~-------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~----~~~~g~~~~a~ 252 (259)
- . .-...|..=|..|....+-.....++++.+.. .-.|.+.....+-.+ ..+.|++++|-
T Consensus 176 q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 176 QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 0 1 11345666677787777777778888776532 224444444433221 24456665553
No 335
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.63 E-value=2.3 Score=25.02 Aligned_cols=44 Identities=7% Similarity=-0.127 Sum_probs=18.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHH
Q 036731 140 IGKLKNARELSQSLTRAGLMPN--VVTYNITIHALCNDEQMDKAHD 183 (259)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~ 183 (259)
..+.++|+..|+...+.-..+. -.++..++.+++..|++.+++.
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554443321111 1134444444444454444443
No 336
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=87.50 E-value=4.4 Score=27.29 Aligned_cols=64 Identities=8% Similarity=0.051 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 184 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
+...+.+.|++++..= ..+++.+...++.-.|.++++++.+.+...+..|....++.+...|-.
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3344455565554432 244555555555566677777766666555566666666666666644
No 337
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.40 E-value=6.1 Score=25.78 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 036731 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204 (259)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 204 (259)
+..+.++.+...++.|++.....-+++|.+.+++..|..+|+-++.. +.+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 45666777777888999999999999999999999999999998866 233334455544
No 338
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=87.37 E-value=6.3 Score=26.54 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 036731 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177 (259)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (259)
++...+.+.|.+++ .--..++..+...++.-.|.++++++.+.+...+..|.-.-+..+...|-
T Consensus 7 ~~~~~lk~~glr~T-------~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLT-------PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcC-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34455667777765 35556777777777778888888888887666655555555555555553
No 339
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=10 Score=28.08 Aligned_cols=193 Identities=13% Similarity=0.042 Sum_probs=102.7
Q ss_pred HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh------HHHHHHHHHHcCCHHHHHHHHHHHH----hCCCCCCC
Q 036731 52 VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT------FNVIMDELCKNRKMDEATRLLDLMI----QGGVRPDA 121 (259)
Q Consensus 52 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 121 (259)
..|..-..+|....++++|...+.+..+- .+.+... |...+...-....+.++..++++.. +.| .|++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdt 109 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDT 109 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccch
Confidence 44555566777788888888777666532 2222222 2223333334445556666665543 222 2321
Q ss_pred ccchhHHHHHHHHHH--HHhcCChHHHHHHHHHHHHc---CCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHh----
Q 036731 122 FCEINIVAYGCLIDG--LCKIGKLKNARELSQSLTRA---GLM--PNVVTYNITIHALCNDEQMDKAHDLFLDMEV---- 190 (259)
Q Consensus 122 ~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---- 190 (259)
.-.++-.+ ....-++++|+++|++.... +-+ .-...+..+-+.+++...+++|-..+.+-..
T Consensus 110 -------AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 110 -------AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred -------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 11111111 23345677777777765432 111 1123455566667777777776665544321
Q ss_pred cCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHH---hhCCCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 191 KGVAPNC-VIFTTLMPSFIRKNETSKVIELLRSM---DKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 191 ~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
..-.++. ..|...|-.+....++..|.+.++.- ....-+-+..+...|+.+|-. |+.+++-++
T Consensus 183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~kv 249 (308)
T KOG1585|consen 183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKKV 249 (308)
T ss_pred HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHHH
Confidence 1112222 33555566667778999999999873 333334467778888877743 555555444
No 340
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=86.98 E-value=3 Score=23.32 Aligned_cols=46 Identities=7% Similarity=0.240 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 178 MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 178 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
++...++++.++.. +-|..---.++.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555433 23444555667777788888888877777653
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.97 E-value=16 Score=30.08 Aligned_cols=125 Identities=11% Similarity=0.094 Sum_probs=80.3
Q ss_pred HHHHHhcCChHHHH-HHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC
Q 036731 23 IDGLCKEGFVDKAK-ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101 (259)
Q Consensus 23 l~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (259)
|.--...|+.-.|- +++..++...-.|+.....+ ......|+++.+.+.+...... +-....+..++++.....|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 33344566765554 44555554433344433333 3456778999988887766543 34456677888888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036731 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157 (259)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (259)
++.|..+-+.|....+.. ..+........-..|-++++...|+++...+
T Consensus 373 ~~~a~s~a~~~l~~eie~-------~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIED-------EEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccCC-------hhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999998888887665542 2444444444555677888888888887654
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.62 E-value=9.4 Score=27.14 Aligned_cols=92 Identities=11% Similarity=0.034 Sum_probs=44.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
..+...+++++|+..++.......... ....+-..|.+.....|.+++|+..++.....+..+-. ...-..++.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~----lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~--~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDEN----LKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIV--AELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHH--HHHhhhHHH
Confidence 345556666666666555443211110 01122333444555566666666666655555443321 111234455
Q ss_pred hcCChhHHHHHHHHHHhc
Q 036731 174 NDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~ 191 (259)
..|+-++|..-|....+.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 171 AKGDKQEARAAYEKALES 188 (207)
T ss_pred HcCchHHHHHHHHHHHHc
Confidence 556666666666665555
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.19 E-value=8.2 Score=26.06 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=8.8
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 036731 96 LCKNRKMDEATRLLDLMIQ 114 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~ 114 (259)
+...|++++|.++|+.+.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3344444444444444443
No 344
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.13 E-value=3.4 Score=21.65 Aligned_cols=33 Identities=9% Similarity=0.274 Sum_probs=19.3
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCchHhHHHHHH
Q 036731 27 CKEGFVDKAKELFLQMKDENINPNVVTYNSLIH 59 (259)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 59 (259)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666666655555543
No 345
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=84.66 E-value=3.7 Score=31.18 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=31.7
Q ss_pred CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHH
Q 036731 193 VAPNCVI-FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238 (259)
Q Consensus 193 ~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (259)
+.|+..+ |+..|+...+.|++++|++++++..+.|..--..+|..-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3345444 567788888888888888888888888776555555443
No 346
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=84.45 E-value=1.6 Score=28.69 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=24.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 63 YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
..|.-..|..+|..|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345667789999999999988876 67776554
No 347
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.06 E-value=14 Score=26.92 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036731 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228 (259)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (259)
.||-.|.+.+...|+.++|..+|+-....++
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 4566667777777888888888877665543
No 348
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.26 E-value=9.2 Score=27.11 Aligned_cols=61 Identities=13% Similarity=-0.072 Sum_probs=37.3
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHH-cCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 036731 55 NSLIHGFCYANDGNEAEYLFIEMMD-RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
...+......++.+......+.+.+ ....|+..++..++.++...|+.++|.++.+++...
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333355554444443333332 123678888888888888888888888888877654
No 349
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.24 E-value=27 Score=34.73 Aligned_cols=119 Identities=6% Similarity=-0.047 Sum_probs=75.0
Q ss_pred HHHHHHhhcCChhHHHHHHHHH----HHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHH
Q 036731 56 SLIHGFCYANDGNEAEYLFIEM----MDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131 (259)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (259)
.+..+-.+++.+.+|...++.- .+. ......+..+...|...++++...-+...-.. . ....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~---------~sl~ 1453 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---D---------PSLY 1453 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---C---------ccHH
Confidence 4445667888888998888873 221 11233455555689999998888777664111 1 1333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (259)
.-|......|+++.|...|+.+...+. +...+++-++......|.++.+....+...
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 445556677899999999999887642 235566666666566666666655444433
No 350
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=83.19 E-value=3.3 Score=31.47 Aligned_cols=29 Identities=24% Similarity=0.110 Sum_probs=14.7
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHcCCC
Q 036731 55 NSLIHGFCYANDGNEAEYLFIEMMDRGLQ 83 (259)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (259)
+..|....+.||+++|++++++..+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34455555555555555555555555544
No 351
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.18 E-value=8.7 Score=27.25 Aligned_cols=33 Identities=6% Similarity=0.132 Sum_probs=26.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 194 APNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 194 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
.|++.+|..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678888888888888888888888888877754
No 352
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=83.03 E-value=12 Score=25.24 Aligned_cols=87 Identities=11% Similarity=0.176 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCcHHHH
Q 036731 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGL-----MPNVVTYNITIHALCNDEQ-MDKAHDLFLDMEVKGVAPNCVIF 200 (259)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~ 200 (259)
....+.++......+++.....+++.+..... ..+...|..++.+.++..- ---+..+|.-+.+.+.++++.-|
T Consensus 39 ~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy 118 (145)
T PF13762_consen 39 TIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 35567777777777888888888777743210 2355677888887766555 34556677777777778888888
Q ss_pred HHHHHHHHhcCCH
Q 036731 201 TTLMPSFIRKNET 213 (259)
Q Consensus 201 ~~l~~~~~~~~~~ 213 (259)
..++.++.+-...
T Consensus 119 ~~li~~~l~g~~~ 131 (145)
T PF13762_consen 119 SCLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHHcCCCC
Confidence 8888877665433
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.52 E-value=9.5 Score=23.81 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (259)
..++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+ ..||...|.+|-. .+.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 357777777777765422 2222222345577899999999888766 3788888877654 57888888888888
Q ss_pred HHhhCCCccchHHHH
Q 036731 222 SMDKRNVMPYASILS 236 (259)
Q Consensus 222 ~~~~~~~~~~~~~~~ 236 (259)
+|...| .|....|.
T Consensus 93 rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 93 RLAASG-DPRLQTFV 106 (115)
T ss_pred HHHhCC-CHHHHHHH
Confidence 888776 45444443
No 354
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=82.15 E-value=8.8 Score=32.61 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCccchHHHHHHHH
Q 036731 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVD 240 (259)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (259)
+.+++.+|.+.+-.+.+.+..|...-...+.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34777777777777776666665444433333
No 355
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.13 E-value=14 Score=27.43 Aligned_cols=61 Identities=8% Similarity=0.015 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTR----AG-LMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 188 (259)
.....+..-|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+.-++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5566677777777777777777776642 23 2334455666666777777777666655444
No 356
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=81.85 E-value=2.2 Score=28.04 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=22.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036731 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172 (259)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (259)
..|.-..|..+|+.|.+.|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34556677888888888887776 467766543
No 357
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.47 E-value=24 Score=28.51 Aligned_cols=80 Identities=24% Similarity=0.233 Sum_probs=44.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCchHh--HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchh--hHHHHHHHHHH
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNVVT--YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV--TFNVIMDELCK 98 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 98 (259)
+...++.|+.+-+..++ +.|..|+... ..+.+..++..|+.+- .+.+.+.|..|+.. ...+.+...+.
T Consensus 6 L~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHH
Confidence 44455677776555444 4566665432 2344555566777654 44445566555432 12334556667
Q ss_pred cCCHHHHHHHHH
Q 036731 99 NRKMDEATRLLD 110 (259)
Q Consensus 99 ~~~~~~a~~~~~ 110 (259)
.|+.+.+..+++
T Consensus 78 ~g~~~~v~~Ll~ 89 (413)
T PHA02875 78 EGDVKAVEELLD 89 (413)
T ss_pred CCCHHHHHHHHH
Confidence 888776655554
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=80.75 E-value=7.8 Score=21.64 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMI 113 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~ 113 (259)
.++.++...|++++|.+.+.++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 35555666666666666555554
No 359
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.66 E-value=25 Score=27.64 Aligned_cols=88 Identities=11% Similarity=0.036 Sum_probs=50.8
Q ss_pred HHHhhcCChhHHHHHHHHHHHcCCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHH
Q 036731 59 HGFCYANDGNEAEYLFIEMMDRGLQS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137 (259)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (259)
+-|.++|.+++|+..|..-... .| |.+++..-..+|.+...+..|+.=.......+.. -+..|..-+.+-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-------Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-------YVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-------HHHHHHHHHHHH
Confidence 4567788888888888776654 33 7777777777888877776665544444322110 123344444444
Q ss_pred HhcCChHHHHHHHHHHHH
Q 036731 138 CKIGKLKNARELSQSLTR 155 (259)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~ 155 (259)
...|...+|.+=++....
T Consensus 176 ~~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLA 193 (536)
T ss_pred HHHhhHHHHHHhHHHHHh
Confidence 444455555554444444
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=80.49 E-value=6.5 Score=20.59 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=13.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCccchHHHHHH
Q 036731 209 RKNETSKVIELLRSMDKRNVMPYASILSII 238 (259)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (259)
+.|-.+++..++++|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 334444444444444444444444444443
No 361
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.49 E-value=24 Score=29.96 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=62.1
Q ss_pred HhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc
Q 036731 61 FCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140 (259)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (259)
+.-.|+...|...+.........-..+....|.....+.|....|..++.+....... .+-++..+.+++...
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-------epl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-------EPLTFLSLGNAYLAL 689 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-------CchHHHhcchhHHHH
Confidence 3456788888888777664433223344555666777777777888887776655422 126778888888888
Q ss_pred CChHHHHHHHHHHHHcC
Q 036731 141 GKLKNARELSQSLTRAG 157 (259)
Q Consensus 141 ~~~~~a~~~~~~~~~~~ 157 (259)
.+++.|++.|++..+..
T Consensus 690 ~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLT 706 (886)
T ss_pred hhhHHHHHHHHHHHhcC
Confidence 89999999998887764
No 362
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=80.26 E-value=11 Score=22.85 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=17.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK 215 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 215 (259)
..|+.+.|.+++..+. . .| ..|..++.++...|.-.-
T Consensus 48 ~~g~~~~ar~LL~~L~-r--g~--~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-Q--KE--GWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-c--CC--cHHHHHHHHHHHcCchhh
Confidence 3455555555555555 3 12 234455555555544433
No 363
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.26 E-value=35 Score=28.83 Aligned_cols=185 Identities=10% Similarity=0.014 Sum_probs=89.9
Q ss_pred chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHH
Q 036731 50 NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129 (259)
Q Consensus 50 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
+..+|+.-+..-.+.|+.+.+.-+|++..-. +..=...|-..+.-....|+.+.|..++.+..+.-.+..+ .+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~------~i 368 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP------II 368 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc------HH
Confidence 3455666666666777777777777665532 1112334444444444557766666666555443332211 22
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChhHHH---HHHHHHHhcCCCCcHHHHHHHHH
Q 036731 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV-TYNITIHALCNDEQMDKAH---DLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
.-.-....-..|+++.|..+++.+...- |+.. .-..-+....+.|+.+.+. .++...... .-+......+.-
T Consensus 369 ~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~ 444 (577)
T KOG1258|consen 369 HLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYV 444 (577)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHH
Confidence 2222222334567777777777766552 3321 2222233444556666555 222222221 111112222211
Q ss_pred -----HHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhc
Q 036731 206 -----SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246 (259)
Q Consensus 206 -----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 246 (259)
.+.-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 445 ~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 445 KFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 122346667777777776654 3445555555555544443
No 364
>PRK09462 fur ferric uptake regulator; Provisional
Probab=80.07 E-value=15 Score=24.85 Aligned_cols=36 Identities=6% Similarity=-0.026 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
.-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 444555555555444444444444444455444443
No 365
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.06 E-value=19 Score=25.69 Aligned_cols=132 Identities=8% Similarity=0.026 Sum_probs=85.4
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 036731 85 DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT 164 (259)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (259)
-...|..++.... .+.+ +.....+.+......... -.-.-..+...+...+++++|...++..... |....
T Consensus 53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Y----a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~ 123 (207)
T COG2976 53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIY----AVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDEN 123 (207)
T ss_pred HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHH----HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHH
Confidence 3445555555554 2333 444555555554322111 2233344567788999999999999988764 22223
Q ss_pred H-----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 165 Y-----NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 165 ~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
+ -.|.+.....|.+++|+..++...+.+.. ......-.+.+...|+-++|..-|....+.+
T Consensus 124 lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 124 LKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3 33456677899999999999888766432 2233444578899999999999999988775
No 366
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.98 E-value=6 Score=30.63 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=39.1
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 036731 56 SLIHGFCYANDGNEAEYLFIEMMDRGLQSD-VVTFNVIMDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
.|.-+..+.|+..+|.+.++++.+.-.-.+ ......|+.+|....-+.+...++.+..+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344445678999999999998876521111 123446788888877777777777665544
No 367
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.97 E-value=22 Score=27.95 Aligned_cols=88 Identities=11% Similarity=0.004 Sum_probs=55.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 036731 135 DGLCKIGKLKNARELSQSLTRAGLMP-NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213 (259)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 213 (259)
.-|.+.|.+++|+..|..-... .| +.+++..-..+|.+...+..|+.-.......+ ..-...|..=+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 4577899999999999887765 34 78888888889999888887776665555431 00112233333333334455
Q ss_pred HHHHHHHHHHhh
Q 036731 214 SKVIELLRSMDK 225 (259)
Q Consensus 214 ~~a~~~~~~~~~ 225 (259)
.+|.+=++..++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555544443
No 368
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=79.31 E-value=9 Score=21.69 Aligned_cols=34 Identities=3% Similarity=0.019 Sum_probs=16.7
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN 46 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 46 (259)
.|....++.++..+++..-.+.++..+.++.++|
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444445555555555555555555555555444
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.76 E-value=4.4 Score=17.67 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
+|..+...+...|+++.|...++...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666666777777777777766554
No 370
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.71 E-value=24 Score=26.25 Aligned_cols=59 Identities=7% Similarity=-0.035 Sum_probs=43.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHH----cC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036731 54 YNSLIHGFCYANDGNEAEYLFIEMMD----RG-LQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112 (259)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 112 (259)
--.+...|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566788999999999999998852 23 2334556667788888899988887765554
No 371
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=78.67 E-value=40 Score=29.22 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCCChhh
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK------NARELSQSLTRAGLMPNVVT 164 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~ 164 (259)
+|+.+|...|++..+.++++.+....-.... -...+|..|+...+.|.++ .|...+++.. +.-|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~----~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKI----LLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCee----ehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchH
Confidence 6777888888888888887777654322111 2346677777777777643 2333333333 3346667
Q ss_pred HHHHHHHHH
Q 036731 165 YNITIHALC 173 (259)
Q Consensus 165 ~~~li~~~~ 173 (259)
|..++++..
T Consensus 106 ~all~~~sl 114 (1117)
T COG5108 106 YALLCQASL 114 (1117)
T ss_pred HHHHHHhhc
Confidence 766665543
No 372
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.61 E-value=40 Score=28.52 Aligned_cols=188 Identities=13% Similarity=0.009 Sum_probs=118.8
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (259)
+++..+|+.-+..-.+.|+++.+.-+|++..-.- ..=...|-..++.....|+.+-|..++....+--.+..+.+--.-
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 3467889999999999999999999999886421 111334444555555669999998888776654333233222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHH---HHHHHHHcCCCCChhhHHHHH
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE---LSQSLTRAGLMPNVVTYNITI 169 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~li 169 (259)
...+-..|++..|..+++.+...- |. -...-..-+..-.+.|+.+.+.. ++....... -+......+.
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~--pg-----~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~ 443 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEY--PG-----LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLY 443 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhC--Cc-----hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHH
Confidence 223445789999999999998753 43 12333334556677888888774 333222211 1222222222
Q ss_pred HH-----HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 036731 170 HA-----LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 170 ~~-----~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 211 (259)
-- +.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 21 33467889999999999887 5667777888887766554
No 373
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.54 E-value=43 Score=28.91 Aligned_cols=199 Identities=15% Similarity=0.147 Sum_probs=113.1
Q ss_pred CCchHhHHHHHHHHhhcCChhHHHHHHHHHH-HcCCCCc--hhhHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCCcc
Q 036731 48 NPNVVTYNSLIHGFCYANDGNEAEYLFIEMM-DRGLQSD--VVTFNVIMDELC-KNRKMDEATRLLDLMIQGGVRPDAFC 123 (259)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (259)
+.+...|..||.. |++.++.+. +..++|. ..++-.+...+. ...+++.|+..+.+.......++- .
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~-~ 96 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL-T 96 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch-H
Confidence 3466677777764 445566665 3334443 334455666665 678899999999877544333221 1
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHhcC---CCC
Q 036731 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRA----GLMPNVVTYNIT-IHALCNDEQMDKAHDLFLDMEVKG---VAP 195 (259)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~p 195 (259)
..--.....++..+.+.+... |....++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 111233445567777776666 88888876543 111122233333 222333478999999998876542 244
Q ss_pred cHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhCC---------CccchHHHHHHHHHHH--HhcccCCcchhhhc
Q 036731 196 NCVIFTTLMPSFI--RKNETSKVIELLRSMDKRN---------VMPYASILSIIVDLLV--KNEISLNSIPQFNR 257 (259)
Q Consensus 196 ~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~ 257 (259)
...++..++.+.. +.+..+++.+.++++.... ..|...++..+++.++ ..|+++.+...+++
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555544 4455677777777663211 2446667777777764 44555566555544
No 374
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=78.52 E-value=17 Score=25.26 Aligned_cols=60 Identities=5% Similarity=-0.094 Sum_probs=30.4
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 036731 153 LTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213 (259)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 213 (259)
+...|++++..- ..++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344455543332 234444444444556666666666665555555544445555555544
No 375
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.52 E-value=30 Score=27.03 Aligned_cols=119 Identities=10% Similarity=0.045 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCCh
Q 036731 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN---DEQM 178 (259)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~ 178 (259)
.+.-+.++++..+. .|+ +......++..+.+..+.+...+-|+++...... +...|...|..... .-.+
T Consensus 47 ~E~klsilerAL~~--np~-----~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v 118 (321)
T PF08424_consen 47 AERKLSILERALKH--NPD-----SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTV 118 (321)
T ss_pred HHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcH
Confidence 45667788887776 333 5688899999999999999999999999887422 56677777766544 2345
Q ss_pred hHHHHHHHHHHhc------CC----CCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036731 179 DKAHDLFLDMEVK------GV----APNC-------VIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228 (259)
Q Consensus 179 ~~a~~~~~~~~~~------~~----~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (259)
+.+..+|.+.... +. .+.. .++..+...+.++|..+.|..+++-+.+.++
T Consensus 119 ~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 119 SDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 5666666554322 11 0111 2233344455678999999999999888655
No 376
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.40 E-value=28 Score=26.63 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 036731 166 NITIHALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~ 188 (259)
..++..+.+.|.+.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 44677777888888887765543
No 377
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=78.07 E-value=26 Score=27.02 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----------cCCHHHH
Q 036731 147 RELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR----------KNETSKV 216 (259)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~~~~~~a 216 (259)
.++|+.+...++.|.-..+..+.-.+.+.=.+..+..+|+.+... ..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356777777788888888887777777777788888888887754 2225555555543 3666655
Q ss_pred HHHHH
Q 036731 217 IELLR 221 (259)
Q Consensus 217 ~~~~~ 221 (259)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55554
No 378
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.02 E-value=24 Score=25.77 Aligned_cols=160 Identities=15% Similarity=0.034 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCC-CCchhhHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL-QSDVVTFNVIMD 94 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 94 (259)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+...-+... .|=...|--+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 4567766666777777777777777766542111111222222 22344666666666655554421 11122222111
Q ss_pred HHHHcCCHHHHHHHH-HHHHhCCCCCCCccchhHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCC------CCChhhHH
Q 036731 95 ELCKNRKMDEATRLL-DLMIQGGVRPDAFCEINIVAYGCLI-DGLCKIGKLKNARELSQSLTRAGL------MPNVVTYN 166 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 166 (259)
-+.-++.+|..-+ ++..+. |..-|...| ..|...=.. ..+++++....- ..-+.||-
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~----------d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyF 241 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKS----------DKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYF 241 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhc----------cHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHH
Confidence 1223444444332 333222 112333222 222211111 222333322110 01244677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC
Q 036731 167 ITIHALCNDEQMDKAHDLFLDMEVKG 192 (259)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~ 192 (259)
-+..-+...|+.++|..+|+-....+
T Consensus 242 YL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 242 YLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHh
Confidence 77788889999999999998887663
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.75 E-value=29 Score=26.58 Aligned_cols=71 Identities=13% Similarity=-0.015 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCccchHHH
Q 036731 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD-----KRNVMPYASIL 235 (259)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 235 (259)
+++...+.|..+|.+.+|.++.+.....+ +.+...+..|+..+...|+--.+.+-++++. +.|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44555666777777777777777766553 4566667777777777777555555555443 23555444443
No 380
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.46 E-value=26 Score=25.89 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=63.4
Q ss_pred HHhcCChHHHHHHHHHHh----hCCCCCchH-hHHHHHHHHhhcCChhHHHHHHHHHHHc----C-CCCchhhHHHHHHH
Q 036731 26 LCKEGFVDKAKELFLQMK----DENINPNVV-TYNSLIHGFCYANDGNEAEYLFIEMMDR----G-LQSDVVTFNVIMDE 95 (259)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~ 95 (259)
|--.+++..|-..|.+.- +.|-+.|.. +|....+ |.+..++++|.+.++...+. | +..-......+...
T Consensus 44 yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEi 122 (288)
T KOG1586|consen 44 YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEI 122 (288)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHH
Confidence 333444444444444432 223333332 3333333 34455777766666654432 1 11112222334455
Q ss_pred HHHc-CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 036731 96 LCKN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159 (259)
Q Consensus 96 ~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (259)
|-.. .++++|+..|++.-+-- ..+.........+.-+...-...+++.+|..+|++.....+.
T Consensus 123 yEsdl~d~ekaI~~YE~Aae~y-k~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 123 YESDLQDFEKAIAHYEQAAEYY-KGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5443 56777777777654321 111000001123333444456678899999999998776544
No 381
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=77.34 E-value=23 Score=25.04 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHcCCCCC--hhhH-----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 036731 143 LKNARELSQSLTRAGLMPN--VVTY-----NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210 (259)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 210 (259)
++.|+.+|+.+.+.-..|. .... ...+..|.+.|.+++|.+++++.... |+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 5677777777766432221 1111 22234466777777777777776653 3444434433333333
No 382
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.15 E-value=49 Score=28.82 Aligned_cols=230 Identities=9% Similarity=0.018 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
.+...-.....+....|+.++|....+.+-..| ...+..++.++..+.+.|.+.... ++.+|...=...+...-..+.
T Consensus 127 ~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~ 204 (644)
T PRK11619 127 KPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLA 204 (644)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 344445556677777777777766666665554 235666777777777666554432 223332110011111111122
Q ss_pred HHHHH------------cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 036731 94 DELCK------------NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG-LMP 160 (259)
Q Consensus 94 ~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 160 (259)
..+.. ..+...+...+.. ..++. .+.......+.-+ ...+.+.|...+....... ..+
T Consensus 205 ~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~---~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~ 275 (644)
T PRK11619 205 KQLPADYQTIASALIKLQNDPNTVETFART-----TGPTD---FTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNE 275 (644)
T ss_pred HhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCCh---hhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCH
Confidence 11100 0111111111110 11110 0011111112222 3445688888888764432 221
Q ss_pred Ch--hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHH
Q 036731 161 NV--VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238 (259)
Q Consensus 161 ~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (259)
.. .++..+.......+...++...+...... ..+......-+....+.++++.+...+..|.... .-...-...+
T Consensus 276 ~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~ 352 (644)
T PRK11619 276 DQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQ 352 (644)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHH
Confidence 11 12333333333332245555555554332 1233444444555557777777777777765432 2233444556
Q ss_pred HHHHHHhcccCCcchhhhc
Q 036731 239 VDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 239 ~~~~~~~g~~~~a~~~~~~ 257 (259)
.+++...|+.++|...|++
T Consensus 353 aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 353 ADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 6666667777777766654
No 383
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.47 E-value=43 Score=30.15 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCCh--hHHHHHHHHHHhcCCCCcHHHHH-
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAG---LMPNVVTYNITIHALCNDEQM--DKAHDLFLDMEVKGVAPNCVIFT- 201 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~p~~~~~~- 201 (259)
.-|..|+..|...|+.++|+++|.+..+.. -.--...+..++.-+.+.+.. +-.+++-.-..+..-.-....+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 468899999999999999999999987732 111122333345544444443 44444333333221000000111
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHh
Q 036731 202 -----------TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245 (259)
Q Consensus 202 -----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (259)
..+-.|......+-+..+++.+....-.++....+.++..|.+.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 11234456677788888999888766566777788888887654
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.45 E-value=42 Score=33.58 Aligned_cols=150 Identities=12% Similarity=-0.027 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (259)
++..+-.+++.+..|...+++-.....+. ......+..+...|...+++|...-+...-.. +...+ .-|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~----~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK----ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh----HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHH
Confidence 45566778899999999998831111111 11234555555699999999998888875221 22233 3445
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHH-HHHHHHHHHhcccC
Q 036731 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASIL-SIIVDLLVKNEISL 249 (259)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 249 (259)
.....|++..|...|+.+.+.+ ++...+++-++......|.++.+....+...... .+....+ +.=+.+-.+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 5678899999999999999773 2336667777766667777777666555544332 2222222 22333345555555
Q ss_pred Ccc
Q 036731 250 NSI 252 (259)
Q Consensus 250 ~a~ 252 (259)
...
T Consensus 1536 ~~e 1538 (2382)
T KOG0890|consen 1536 LLE 1538 (2382)
T ss_pred hhh
Confidence 443
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.86 E-value=32 Score=26.06 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC---CC--CCchHhHHHHHHHHhhcCChhHHHHHHHHHHH----cC-CCCch
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDE---NI--NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD----RG-LQSDV 86 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~ 86 (259)
.+...++..+.+.+++++....|.++..- .+ .-+..+.|.++.......+.+-..++|+.-.+ .. -..--
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWF 145 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWF 145 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeee
Confidence 34556677778888888888877777531 11 23455667777766666665555555443221 10 01111
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-----cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-----CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG-LMP 160 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 160 (259)
.|-..|...|...+++.+..+++.++.+.-...+.. ...-...|..=|..|....+-.+-..++++..... -.|
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 233457778888888888888888886532111110 11123577777888888888888888888765422 233
Q ss_pred ChhhHHHHHHHH-----HhcCChhHHHH
Q 036731 161 NVVTYNITIHAL-----CNDEQMDKAHD 183 (259)
Q Consensus 161 ~~~~~~~li~~~-----~~~~~~~~a~~ 183 (259)
.+.... .|+-| .+.|++++|..
T Consensus 226 HPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 226 HPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chHHHh-HHHHcCCccccccchHHHHHh
Confidence 443333 33333 35566666543
No 386
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.04 E-value=35 Score=26.11 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=81.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCchHh-------HHHHHHHHhhcCChhHHHHHHHHHHH----cCCCCchhhH
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDENINPNVVT-------YNSLIHGFCYANDGNEAEYLFIEMMD----RGLQSDVVTF 89 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 89 (259)
-+.+-..+.+++++|+..+.+....|+..+..+ ...+...|.+.|++..--+......+ -.-+......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 355667789999999999999999988876544 45567788888887765555443322 1111123334
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHH----HHHcCCCCChh
Q 036731 90 NVIMDELCKN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS----LTRAGLMPNVV 163 (259)
Q Consensus 90 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~ 163 (259)
.+|+..+... ..++..+.+.....+-...... .-.....-.-++..+.+.|.+.+|+.+... +++.+-+|+..
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr-~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKR-KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 4455544332 2344444444433321111000 000113445678889999999999886554 44444444443
No 387
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=74.77 E-value=35 Score=26.36 Aligned_cols=58 Identities=12% Similarity=0.270 Sum_probs=46.4
Q ss_pred HHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 036731 36 KELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (259)
.++|+.+...++.|.-.++.-+.-.+.+.=.+.+++.+|+.+... ..-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 477888888899999999888888888888999999999988754 2226677777764
No 388
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.51 E-value=67 Score=29.06 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCchHhHHHHHHHHhhcCCh--hHHHHHHHHHHHcCCCCchhhHHH-
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDEN---INPNVVTYNSLIHGFCYANDG--NEAEYLFIEMMDRGLQSDVVTFNV- 91 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 91 (259)
-|..|+..|...|+.++|+++|.+..... ..--..-+..++....+.+.. +-+.++-+...+....-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999987631 111122334455555555544 445554444443322211111111
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc
Q 036731 92 -----------IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140 (259)
Q Consensus 92 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (259)
.+-.|......+-+...++.+....-.+ +....+.++..|+..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~------~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT------STLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc------chHHHHHHHHHHHHH
Confidence 2233555666777888888887554443 347778888877653
No 389
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=74.51 E-value=30 Score=29.87 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=51.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC--CCCCchHhHHHHHHHHhhcCChhH------HHHHHHHHHHcCCCCchhhHHHH
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNE------AEYLFIEMMDRGLQSDVVTFNVI 92 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 92 (259)
.|+.+|..+|++-++.++++..... |-+.-...+|..|+...+.|.++- |.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998765 434446678888999999997653 444444333 34456666665
Q ss_pred HHH
Q 036731 93 MDE 95 (259)
Q Consensus 93 ~~~ 95 (259)
+.+
T Consensus 110 ~~~ 112 (1117)
T COG5108 110 CQA 112 (1117)
T ss_pred HHh
Confidence 554
No 390
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.38 E-value=44 Score=26.95 Aligned_cols=67 Identities=12% Similarity=-0.031 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
...+.-+...|..+|+++.|++.|.+.+..-... ...+..|..+|..-.-.|+|.....+..+....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA----KHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3456778888999999999999998866532222 124567777777778888888777777766554
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.34 E-value=61 Score=28.58 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 200 FTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
-..|+..|...+++..|.+++-..++
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccC
Confidence 33477888888999999888876653
No 392
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.81 E-value=25 Score=23.76 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=66.4
Q ss_pred HHHcCCCCch--hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-cchhHHHHHHHHHHHHhcCC-hHHHHHHHHH
Q 036731 77 MMDRGLQSDV--VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGK-LKNARELSQS 152 (259)
Q Consensus 77 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 152 (259)
|.+.+..++. ...+.++......+.+.....+++.+.... ++.. ...+...|.+++.+..+..- ---+..+|..
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~--~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLN--TDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhh--HHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3444444443 234666666677777777777776663211 1000 01244789999999977666 4467788999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhH
Q 036731 153 LTRAGLMPNVVTYNITIHALCNDEQMDK 180 (259)
Q Consensus 153 ~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (259)
+++.+.+++..-|..+|.++.+-...+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 9988889999999999999877544333
No 393
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=73.80 E-value=17 Score=21.97 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH
Q 036731 34 KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106 (259)
Q Consensus 34 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 106 (259)
.+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|...+.++...|..+-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 355777888887744 44444544444446788999999999888 53 346788888888888766554
No 394
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=73.68 E-value=27 Score=24.24 Aligned_cols=63 Identities=17% Similarity=0.013 Sum_probs=46.9
Q ss_pred HHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 036731 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180 (259)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (259)
.+...|+..+ ..-..++......++.-.|.++++.+.+.+..++..|...-|..+...|-...
T Consensus 16 ~L~~~GlR~T-------~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 16 LCAQRNVRLT-------PQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHcCCCCC-------HHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3556677765 34556667766677788999999999999887788887777888887776543
No 395
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.36 E-value=32 Score=24.85 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=66.1
Q ss_pred HHHhhcCChhHHHHHHHHHHHcCCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHH
Q 036731 59 HGFCYANDGNEAEYLFIEMMDRGLQSD----VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLI 134 (259)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 134 (259)
+-+...|++++|..-|...+..-.... ...|..-.-++.+.+.++.|+.-....++.+.. .......-.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-------y~kAl~RRA 175 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-------YEKALERRA 175 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-------hHHHHHHHH
Confidence 446788999999999999988732222 223444455677888999998888777765432 224444556
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 036731 135 DGLCKIGKLKNARELSQSLTRAG 157 (259)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~ 157 (259)
.+|.+...+++|+.=|+++.+..
T Consensus 176 eayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC
Confidence 67888999999999999998864
No 396
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=72.97 E-value=21 Score=22.63 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 200 FTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666554
No 397
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=72.88 E-value=10 Score=24.17 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcc
Q 036731 213 TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247 (259)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 247 (259)
.-.|.++++.+.+.+..++..|....++.+...|-
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33444444444444333344444444444444443
No 398
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.84 E-value=38 Score=25.51 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=33.5
Q ss_pred HcCCCCchhhHHHHHHHHHHcCCHH-HHHHHHHHHH---hCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHH
Q 036731 79 DRGLQSDVVTFNVIMDELCKNRKMD-EATRLLDLMI---QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150 (259)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 150 (259)
+.+.+++......++..+...+.-+ .-.++.+++. +.+-.+.. ++.....+...|.+.|++.+|+..|
T Consensus 42 ~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G----dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 42 KSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG----DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT------HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC----CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3445555555455555554433211 1222222222 23333333 6788889999999999988888766
No 399
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=71.48 E-value=11 Score=21.28 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=39.6
Q ss_pred CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 036731 48 NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99 (259)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (259)
.|....++.++..+++-.-.++++..+.+..+.|.- +..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 467778999999999999999999999999998753 566666666666553
No 400
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.58 E-value=21 Score=30.43 Aligned_cols=63 Identities=11% Similarity=0.010 Sum_probs=28.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
+...-..++..|.+.|-.+.+..+.+.+-..- ....-|..-+..+.+.|+...+..+...+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556667777888887777777777665442 1234455666667777777776666665553
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.43 E-value=22 Score=21.73 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=15.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQ 114 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~ 114 (259)
+.......|++++|.+.+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556667888888877777654
No 402
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=70.14 E-value=49 Score=25.64 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=37.8
Q ss_pred HHHHHHhcCChHHHHHHHHH-HHHcCCCCChh----hHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 036731 133 LIDGLCKIGKLKNARELSQS-LTRAGLMPNVV----TYNITIHALCNDEQM-DKAHDLFLDMEVKGVAPNCVIFTTLMPS 206 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~----~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 206 (259)
|..-..+...+++.....++ |.+.++ |+.. .|..++++-.-+.+- --|.+.++. ..+|..|+.+
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~a 330 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAA 330 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHH
Confidence 33334444456666555544 455544 4543 466666553322111 122233332 3467788888
Q ss_pred HHhcCCHHHH
Q 036731 207 FIRKNETSKV 216 (259)
Q Consensus 207 ~~~~~~~~~a 216 (259)
++..|+.+..
T Consensus 331 f~s~g~sEL~ 340 (412)
T KOG2297|consen 331 FCSQGQSELE 340 (412)
T ss_pred HhcCChHHHH
Confidence 8888876643
No 403
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=69.85 E-value=18 Score=23.01 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=25.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCCh
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG 67 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 67 (259)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455556666666666655555555555555555555543
No 404
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.83 E-value=71 Score=27.37 Aligned_cols=102 Identities=12% Similarity=-0.001 Sum_probs=65.3
Q ss_pred cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 036731 29 EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 108 (259)
.|+...|...+.........-..+....|.....+.|-.-.|..++.+..... ...+.++-.+.+++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46666777666655433111122334445555666677777888877776654 33566777888999999999999999
Q ss_pred HHHHHhCCCCCCCccchhHHHHHHHHHHHH
Q 036731 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (259)
|++..+.... +...-+.|...-|
T Consensus 699 ~~~a~~~~~~-------~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTK-------CPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCC-------ChhhHHHHHHHHH
Confidence 9888765332 3355555555444
No 405
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=69.78 E-value=14 Score=23.82 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=25.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCC
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 66 (259)
.++....+.+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555555555566666777766666655565555555555555543
No 406
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=69.19 E-value=9.5 Score=24.57 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
.++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|-.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 44455555555666777777777666666666666666677666654
No 407
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.99 E-value=38 Score=23.90 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC----C-------hHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 036731 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG----K-------LKNARELSQSLTRAGLMPNVVTYNITIHA 171 (259)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 171 (259)
++|+.=|++... +.|+ ...++..+..+|...+ + +++|...|++.... .|+..+|+.-+..
T Consensus 52 edAisK~eeAL~--I~P~-----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 52 EDAISKFEEALK--INPN-----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHH--H-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCc-----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 444444555444 3454 3477777877776544 2 45555556555554 6899999988887
Q ss_pred HHhcCChhHHHHHHHHHHhcCC
Q 036731 172 LCNDEQMDKAHDLFLDMEVKGV 193 (259)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~ 193 (259)
.. +|-.+..++.+.+.
T Consensus 123 ~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 123 AA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HH------THHHHHHHHHHSSS
T ss_pred HH------hhHHHHHHHHHHHh
Confidence 63 46666666666543
No 408
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=67.31 E-value=29 Score=21.92 Aligned_cols=63 Identities=8% Similarity=0.083 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCC
Q 036731 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ--MDKAHDLFLDMEVKGVA 194 (259)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~ 194 (259)
...++.-|...|+.++|...++++... .-.......++..+...++ -+.+..++..+...+.-
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 345667788889999999988876332 1122333444444444322 33455566666666543
No 409
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.29 E-value=28 Score=21.82 Aligned_cols=79 Identities=9% Similarity=-0.020 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036731 32 VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL 111 (259)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 111 (259)
-++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+ ..||...|..|.. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 46777777777655311 2222233345677899999999887655 4788888866543 467777777777777
Q ss_pred HHhCCC
Q 036731 112 MIQGGV 117 (259)
Q Consensus 112 ~~~~~~ 117 (259)
+...|.
T Consensus 94 la~sg~ 99 (115)
T TIGR02508 94 LAASGD 99 (115)
T ss_pred HHhCCC
Confidence 776653
No 410
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=67.07 E-value=44 Score=23.92 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=40.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC--------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036731 167 ITIHALCNDEQMDKAHDLFLDMEVKG--------------VAPNCVIFTTLMPSFIRKNETSKVIELLRS 222 (259)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~--------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (259)
+++-.|.+..++.++.++++.|.+.. ..+-....|.....|.+.|..+.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 45566777777888888887776542 233446677778888889999999888874
No 411
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.97 E-value=89 Score=27.07 Aligned_cols=170 Identities=11% Similarity=0.090 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHH-hcCChHHHHHHHHHHhhCCCCCchH-----hHHHHHHHHhhcCChhHHHHHHHHHHHcC----CCC
Q 036731 15 NTVTYNTIIDGLC-KEGFVDKAKELFLQMKDENINPNVV-----TYNSLIHGFCYANDGNEAEYLFIEMMDRG----LQS 84 (259)
Q Consensus 15 ~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~ 84 (259)
+..++-.+...+. ...+++.|+..+++.....-+++-. .-..++..+.+.+... |...+++..+.- ..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4456666677766 6788999999999875442222211 1234456666666555 888888876532 112
Q ss_pred chhhHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcC----
Q 036731 85 DVVTFNVI-MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC--KIGKLKNARELSQSLTRAG---- 157 (259)
Q Consensus 85 ~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---- 157 (259)
-...|..+ +..+...+++..|.+.++.+........ .+-..++..++.+.. +.+..+++.+..+.+....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~---d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q 213 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG---DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ 213 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc
Confidence 22333333 2233334799999999988875432221 124556666665544 4455677777777664321
Q ss_pred -----CCCChhhHHHHHHHHH--hcCChhHHHHHHHHH
Q 036731 158 -----LMPNVVTYNITIHALC--NDEQMDKAHDLFLDM 188 (259)
Q Consensus 158 -----~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~ 188 (259)
..|...+|..++..++ ..|+++.+...++++
T Consensus 214 ~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 214 LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1345667777776655 566666666655554
No 412
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=65.79 E-value=65 Score=25.42 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHH
Q 036731 179 DKAHDLFLDMEVKGVAPNC----VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242 (259)
Q Consensus 179 ~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (259)
++++.++.++... .|+. .-|-++.......|.++.+..+|++.+..|..|-...-..+++.+
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3444455544443 2332 234444444555555555555555555555555544444444443
No 413
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=65.60 E-value=60 Score=24.95 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=64.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (259)
.++....+.+......+.+..+.. ...-...+......|++..|++++.+..+. .. ....|+.+=.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~ 168 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRH 168 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHH
Confidence 345555556666666666666543 255566677788899999999998887653 10 1111221111
Q ss_pred HHHhcCChhHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036731 171 ALCNDEQMDKAHDLFLDMEVK-----GVAPNCVIFTTLMPSFIRKNETSKVIELLR 221 (259)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (259)
.- .++++-....+.+.+. -...|+..|..++.+|.-.|+.+.+.+-+.
T Consensus 169 L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 169 LS---SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred Hh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 11 1222222222222221 114577889999999998888766654433
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.46 E-value=36 Score=22.30 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036731 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152 (259)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (259)
.+.++|..|...|+... ....|......+...|++++|..+|+.
T Consensus 81 ~~~~if~~l~~~~IG~~-----~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTK-----LALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTT-----BHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888888777655 457888888888888999999888875
No 415
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.19 E-value=32 Score=22.98 Aligned_cols=64 Identities=6% Similarity=-0.087 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 128 VAYGCLIDGLCKIG---KLKNARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 128 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
.+--.+.-++.+.. +..+...+++++.+...+.. .....-|.-++.+.++++.+.++.+.+.+.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34444444444443 45667777777776322212 223333445677788888888888777766
No 416
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=65.04 E-value=37 Score=22.29 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=16.9
Q ss_pred HHHHHHHhhCCCcc-chHHHHHHHHHHHHhcccCCcchhhh
Q 036731 217 IELLRSMDKRNVMP-YASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 217 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.++|..|..+++-. -+..|......+...|++.+|.++|+
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444443321 22333444444444455555444443
No 417
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.81 E-value=1e+02 Score=27.35 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=91.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCC---chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINP---NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (259)
+.-+.+.+.+++|+++.+..... .| -.......|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45566788899998887765433 33 3456677888888899999998888888765 556666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHH-----------------HcCCCCCh
Q 036731 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT-----------------RAGLMPNV 162 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~ 162 (259)
++......+ .|......+...|..++-.+.. .+...-.++.++.. +.. .-+.
T Consensus 437 ~~l~~Ia~~---------lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~ 505 (846)
T KOG2066|consen 437 DQLTDIAPY---------LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SEST 505 (846)
T ss_pred cccchhhcc---------CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccch
Confidence 654432211 1221112344677777777665 22222222111100 001 1122
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036731 163 VTYNITIHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (259)
..-..|+..|...+++..|+..+-.+.+
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 3345588889999999999999877763
No 418
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=64.41 E-value=68 Score=29.44 Aligned_cols=159 Identities=11% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI-GKLKNARELSQSLTRAGLMPNVVTYNITI 169 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li 169 (259)
..++-+...+++.+| |.-|+++.+..+-....++..|..=+..+.+. ++.+---.++..+.+.++ +...|....
T Consensus 699 ~~ir~~Ld~~~Y~~A---f~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tmY~~~~ 773 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEA---FELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTMYKDTY 773 (928)
T ss_pred HHHHHHHhhccHHHH---HHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--ccccccccc
Q ss_pred ------------HHHHhcCChhHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCccchHH
Q 036731 170 ------------HALCNDEQMDKAHDLFLDMEV-KGVAPNCVIFTTLMPSFIRKN--ETSKVIELLRSMDKRNVMPYASI 234 (259)
Q Consensus 170 ------------~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~ 234 (259)
......++.....+.+.+..+ . .-...-...++.+|++.+ ++++|.+++.++.+.+...-...
T Consensus 774 ~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~--~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~a 851 (928)
T PF04762_consen 774 PPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP--KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEA 851 (928)
T ss_pred ccccccccccccCCCccccHHHHHHHHHHHHhccc--ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHH
Q ss_pred HHHHHHHHHHhcccCCcchhhh
Q 036731 235 LSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 235 ~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
...++-.---..-++.|+.+|+
T Consensus 852 lkyl~fLvDvn~Ly~~ALG~YD 873 (928)
T PF04762_consen 852 LKYLCFLVDVNKLYDVALGTYD 873 (928)
T ss_pred HhHheeeccHHHHHHHHhhhcC
No 419
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=63.79 E-value=30 Score=20.89 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=22.6
Q ss_pred HHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHH
Q 036731 37 ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78 (259)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 78 (259)
++|+-....|+..|...|..++....-.=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555566656555555444444555555555543
No 420
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.61 E-value=44 Score=30.01 Aligned_cols=147 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 036731 29 EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 108 (259)
++++++++.+.+...--| .++|..+.+.|-++-|+.+.++-..+ ...+...|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHH
Q ss_pred HHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036731 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 188 (259)
-..+-+. .+|..|.....+.|+.+-|+..|+..+. |..|--.|.-.|+.++-.++.+..
T Consensus 666 akkldd~------------d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 666 AKKLDDK------------DVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred HHhcCcH------------HHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHH
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036731 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222 (259)
Q Consensus 189 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (259)
..+ +..+-......| .|+.++-.+++..
T Consensus 725 e~r----~D~~~~~qnalY--l~dv~ervkIl~n 752 (1202)
T KOG0292|consen 725 EIR----NDATGQFQNALY--LGDVKERVKILEN 752 (1202)
T ss_pred Hhh----hhhHHHHHHHHH--hccHHHHHHHHHh
No 421
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.37 E-value=70 Score=24.99 Aligned_cols=119 Identities=8% Similarity=-0.009 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh---cCCh
Q 036731 67 GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK---IGKL 143 (259)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~ 143 (259)
.+.-+.++++..+.+ +.+...+..+|..+.+..+.+...+-++++...... +...|...+..... .-.+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-------~~~LW~~yL~~~q~~~~~f~v 118 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-------SPELWREYLDFRQSNFASFTV 118 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-------ChHHHHHHHHHHHHHhccCcH
Confidence 355677788877773 346667777888888888888888888888765322 34778877777665 2346
Q ss_pred HHHHHHHHHHHHc------CC----CCChh-------hHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 036731 144 KNARELSQSLTRA------GL----MPNVV-------TYNITIHALCNDEQMDKAHDLFLDMEVKGV 193 (259)
Q Consensus 144 ~~a~~~~~~~~~~------~~----~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 193 (259)
+....+|.+.... +. .+... .+..+...+..+|..+.|..+++.+.+.++
T Consensus 119 ~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 119 SDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6666666654421 11 01111 223333344578999999999999988764
No 422
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.41 E-value=33 Score=20.92 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=29.5
Q ss_pred HhcCChhHHHHHHHHHHhc----CCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 173 CNDEQMDKAHDLFLDMEVK----GVAP----NCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~----~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
.+.|++..|.+.+.+..+. +..+ -....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566666665555544332 2111 012222344556677888888888888664
No 423
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=61.73 E-value=62 Score=23.79 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---chHhH--HHHHHHHhhcCChhHHHHHHHHHHHcCCCCchh
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP---NVVTY--NSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 87 (259)
.++..-+|.|+--|.-...+.+|-+.|.. ..|+.| +..++ ..-|......|+.+.|.+....+...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 34455566666666655556666666643 335554 33333 345677789999999999998886554444543
Q ss_pred hHHHHHH----HHHHcCCHHHHHHHHHH
Q 036731 88 TFNVIMD----ELCKNRKMDEATRLLDL 111 (259)
Q Consensus 88 ~~~~l~~----~~~~~~~~~~a~~~~~~ 111 (259)
.+-.|.. -..+.|..++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333322 24567778888887754
No 424
>PRK09687 putative lyase; Provisional
Probab=61.33 E-value=72 Score=24.40 Aligned_cols=81 Identities=7% Similarity=-0.017 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCCh----hHHHHHHHHHHHcCCCCchhh
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG----NEAEYLFIEMMDRGLQSDVVT 88 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 88 (259)
.+|.......+.++...|.. .+...+..+... +|...-...+.+++..|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 45555555666666666643 333333334332 2444444555556666653 3456666555333 334444
Q ss_pred HHHHHHHHHHc
Q 036731 89 FNVIMDELCKN 99 (259)
Q Consensus 89 ~~~l~~~~~~~ 99 (259)
-...+.++...
T Consensus 108 R~~A~~aLG~~ 118 (280)
T PRK09687 108 RASAINATGHR 118 (280)
T ss_pred HHHHHHHHhcc
Confidence 44444444443
No 425
>PRK09687 putative lyase; Provisional
Probab=60.90 E-value=73 Score=24.36 Aligned_cols=203 Identities=13% Similarity=0.052 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHhcCCh----HHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCCh-----hHHHHHHHHHHHcCCCCc
Q 036731 15 NTVTYNTIIDGLCKEGFV----DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-----NEAEYLFIEMMDRGLQSD 85 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 85 (259)
|...=...+.++.+.|+. .++...+..+... .++...-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444455555666653 3466666655333 34555555555555544321 223333333322 235
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhh
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG-KLKNARELSQSLTRAGLMPNVVT 164 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 164 (259)
..+-...+.++.+.++ +.+...+-.+.+. + +..+-...+.++.+.+ +...+...+..+.. .++..+
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~------~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~V 208 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---P------NGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEI 208 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---C------CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHH
Confidence 5666677788888776 4566666666542 2 2245555555665543 24456666666664 347777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHH
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (259)
-...+.++.+.++ ..|...+-+..+.+ + .....+.++...|.. +|...+..+.+. .||..+-...+.++.+
T Consensus 209 R~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 209 RIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 8888888988888 45666666655543 2 234677888888886 688888888865 3477777777766643
No 426
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=60.83 E-value=28 Score=19.48 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=22.7
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHH-----hhcCChhHHHHH
Q 036731 27 CKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGF-----CYANDGNEAEYL 73 (259)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~ 73 (259)
...|++-+|.++++.+-...-.+....+..+|... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34666666666666665432223444455555432 244555555443
No 427
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.54 E-value=1.3e+02 Score=27.16 Aligned_cols=93 Identities=22% Similarity=0.147 Sum_probs=61.8
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCch-------hhHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHH
Q 036731 62 CYANDGNEAEYLFIEMMDRGLQSDV-------VTFNVIMD-ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133 (259)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (259)
....++++|..+..++...-..|+. ..|+.+-. .....|+++.|.++.+..... -|.....+.+..+.++
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~--L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ--LPEAAYRSRIVALSVL 503 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--cccccchhhhhhhhhh
Confidence 4668899999998887654222221 13333322 234578899999888776643 1211123356788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 036731 134 IDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
..+..-.|++++|..+.++..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHH
Confidence 88899999999999998877654
No 428
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=60.27 E-value=46 Score=21.86 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=8.7
Q ss_pred HHHhcCChhHHHHHHHHH
Q 036731 171 ALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~ 188 (259)
-|.+-.+..+|-.+|+-+
T Consensus 107 FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 107 FCLEFSRIKEASALFKLL 124 (126)
T ss_pred HHHHHccHHHHHHHHHHH
Confidence 333444455555555543
No 429
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.11 E-value=88 Score=25.01 Aligned_cols=134 Identities=12% Similarity=0.054 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhh-------CCC------------------CCchHhHHHH---HHHHhhcCC
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKD-------ENI------------------NPNVVTYNSL---IHGFCYAND 66 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~------------------~~~~~~~~~l---i~~~~~~~~ 66 (259)
-+.++-.+-..+.+.|+.+.|.+++++..- ..+ .-|...|-++ |....+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 355666677788899999888888877631 112 1133444443 456788999
Q ss_pred hhHHHHHHHHHHHcCCCCchhhHHHHHHHHH-HcCCHHHHHHHHHHHHhC------CCCCCCccchhHHHHHHHHHHHHh
Q 036731 67 GNEAEYLFIEMMDRGLQSDVVTFNVIMDELC-KNRKMDEATRLLDLMIQG------GVRPDAFCEINIVAYGCLIDGLCK 139 (259)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~ 139 (259)
+..|+++.+-+...+..-|+.....+|+.|+ +.++++-.+++.+..... ..-|+ ..|+..+..+..
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-------~a~S~aLA~~~l 191 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-------FAFSIALAYFRL 191 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-------HHHHHHHHHHHh
Confidence 9999999999988765556666666777765 678888888888876542 11222 566665555554
Q ss_pred cCC--------------hHHHHHHHHHHHH
Q 036731 140 IGK--------------LKNARELSQSLTR 155 (259)
Q Consensus 140 ~~~--------------~~~a~~~~~~~~~ 155 (259)
.+. .+.|...+.+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHH
Confidence 433 2667776666554
No 430
>PRK09462 fur ferric uptake regulator; Provisional
Probab=59.81 E-value=51 Score=22.22 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=37.0
Q ss_pred HHhhCCCCCchHhHHHHHHHHhhc-CChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCH
Q 036731 41 QMKDENINPNVVTYNSLIHGFCYA-NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102 (259)
Q Consensus 41 ~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (259)
.+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|.---+..+...|-+
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345556665443 33444444443 46778888888888777666666655566666666543
No 431
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=58.91 E-value=82 Score=24.33 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 036731 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181 (259)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (259)
.+.|.+.|+.....+..++ ...++.....++....+.|+.+.-..+++..... ++...-..++.+.+...+.+..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~--~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPE--SSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TT--STS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHhcCCcccc--cccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHH
Confidence 4567778887776432211 0124466667777777888866666666665543 3566778888888888888888
Q ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCC--HHHHHHHHH
Q 036731 182 HDLFLDMEVKG-VAPNCVIFTTLMPSFIRKNE--TSKVIELLR 221 (259)
Q Consensus 182 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~ 221 (259)
.++++.....+ +++ ... ..++.++...+. .+.+++.+.
T Consensus 221 ~~~l~~~l~~~~v~~-~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRS-QDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHHHCTSTS-T-TTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHHHcCCccccc-HHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 88888888754 433 333 344444442333 366666654
No 432
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=58.76 E-value=43 Score=21.08 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCC--hhHHHHHHHHHHHcCCC
Q 036731 20 NTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND--GNEAEYLFIEMMDRGLQ 83 (259)
Q Consensus 20 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~ 83 (259)
..++..|...|+.++|..-+.++... .-.......++..+...++ -+.+..++..+...+.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45677888889999999999886432 1223344445555444422 23355666666666544
No 433
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=57.22 E-value=70 Score=22.96 Aligned_cols=178 Identities=13% Similarity=0.058 Sum_probs=96.9
Q ss_pred ccccCCHHHHHHHHHHHHhc----CChHHHHHHHHHHhhCCCCCch----HhHHHHHHHHhhcCChhHHHHHHHHHHHcC
Q 036731 10 VVCKPNTVTYNTIIDGLCKE----GFVDKAKELFLQMKDENINPNV----VTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81 (259)
Q Consensus 10 ~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 81 (259)
.|.-+|+..+|.++..+.+. +.++-+..+=.+....+..++- .....-+..|-..||+.+--.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 46677888899888777554 3444455544455544444432 233334456777888887777765554321
Q ss_pred CCCc-hhhH-HHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCCc-cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 82 LQSD-VVTF-NVIMDELCKNR--KMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 82 ~~~~-~~~~-~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
-.++ ...+ ..+..++.+.- +..--...|.+..-.+...+.. ..+-.++-.+++-.|.+.-+|.++.++++.|.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111 11112222111 1111112222222211111100 0001245556777888889999999999998765
Q ss_pred CC--------------CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 036731 157 GL--------------MPNVVTYNITIHALCNDEQMDKAHDLFLD 187 (259)
Q Consensus 157 ~~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 187 (259)
.+ .+.-...|.....+.+.|..+.|..++++
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 32 22334567788889999999999999984
No 434
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.83 E-value=48 Score=21.02 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHH
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 79 (259)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777888888888777766
No 435
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=56.12 E-value=56 Score=21.50 Aligned_cols=94 Identities=9% Similarity=0.118 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCccchH
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK-----------NETSKVIELLRSMDKRNVMPYAS 233 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~ 233 (259)
+...++.+....-.-.+.++..++....-.|. ......+.-|.+. ....-.-.+++.+.+.++.....
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~-efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~ 99 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQ-EFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVED 99 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcH-HHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHH
Confidence 44555555555555566666666655533332 2233333322221 12223334455666777666666
Q ss_pred HHHHHHHHHHHhcccCCcchhhhccC
Q 036731 234 ILSIIVDLLVKNEISLNSIPQFNRQK 259 (259)
Q Consensus 234 ~~~~l~~~~~~~g~~~~a~~~~~~~k 259 (259)
.+..+-..|.+-.+..||..+|+-+|
T Consensus 100 l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 100 LFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 67777777777778888888887654
No 436
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=55.78 E-value=44 Score=20.22 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 183 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
++|+-....|+..|+.+|..+++...-.--++...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666667777777776666666566666666666654
No 437
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.11 E-value=1.5e+02 Score=26.28 Aligned_cols=180 Identities=9% Similarity=0.085 Sum_probs=80.3
Q ss_pred HHHHHHHHhhCCCCCchHhHHHH--HHHHhhcCChhHHHHHHHHHH-HcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036731 35 AKELFLQMKDENINPNVVTYNSL--IHGFCYANDGNEAEYLFIEMM-DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL 111 (259)
Q Consensus 35 a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 111 (259)
.+...+.+.+..-.| ......| -..|...|++++|+.+--... .-.+.++...+.+++.-|... -.+.+.+.+..
T Consensus 42 ~l~~IE~lyed~~F~-er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~ 119 (929)
T KOG2062|consen 42 SLPKIESLYEDETFP-ERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKN 119 (929)
T ss_pred hHHHHHHHhccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcC
Confidence 334444444433233 3333333 356788899999988754442 223555666666655544432 01122222221
Q ss_pred HH-hCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHH---------HHH-HHHcCCCCChhhHHHHHHHHHhcCC-hh
Q 036731 112 MI-QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL---------SQS-LTRAGLMPNVVTYNITIHALCNDEQ-MD 179 (259)
Q Consensus 112 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---------~~~-~~~~~~~~~~~~~~~li~~~~~~~~-~~ 179 (259)
-. ..++.+. -......++..|...+++..|+-+ +++ ..+.... ....+.++..+....+ .+
T Consensus 120 ~~~~~~iD~r-----L~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~--~~~~~yll~l~~s~v~~~e 192 (929)
T KOG2062|consen 120 PEQKSPIDQR-----LRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSV--IGNLTYLLELLISLVNNRE 192 (929)
T ss_pred ccccCCCCHH-----HHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhcccccc--chHHHHHHHHHHHHHhhHH
Confidence 11 1111110 123344444444444444444333 222 1122111 1223333333332222 23
Q ss_pred HHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 180 KAHDLFLDMEVK---GVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 180 ~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
--.++++.+.+. .-.|| |..+.+++....+.+.+.+++..+.+.
T Consensus 193 fR~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 333444444332 23444 445667777778888888888777653
No 438
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.66 E-value=1.5e+02 Score=25.92 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=59.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (259)
.+..++..+.+.|..-... +..|.....-...+..+--+|....+.|.|.+++++..+.+.. +..+--.+..+....+
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhc
Confidence 4556777888877643322 2222211112456677778888999999999999999986422 3333344556677788
Q ss_pred ChhHHHHHHHHHH
Q 036731 177 QMDKAHDLFLDME 189 (259)
Q Consensus 177 ~~~~a~~~~~~~~ 189 (259)
..++|+.......
T Consensus 443 ~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 443 KSEEALTCLQKIK 455 (872)
T ss_pred chHHHHHHHHHHH
Confidence 8888888777654
No 439
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.15 E-value=1.5e+02 Score=25.84 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=28.1
Q ss_pred chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 036731 50 NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 50 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (259)
+...|. +|-.|.++|++++|.++.....+. .......+...+..|..
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 344554 455788999999999998555433 33344455555555544
No 440
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.88 E-value=57 Score=20.93 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=17.1
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHcC
Q 036731 57 LIHGFCYANDGNEAEYLFIEMMDRG 81 (259)
Q Consensus 57 li~~~~~~~~~~~a~~~~~~~~~~~ 81 (259)
+++...++...++|+++.+-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3455566677777777777777766
No 441
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=53.83 E-value=84 Score=22.90 Aligned_cols=91 Identities=16% Similarity=0.074 Sum_probs=53.1
Q ss_pred hcCChHHHHHHHHHHhh----CCCCCchHh--HHHHHHHHhhcCC-------hhHHHHHHHHHHHcCCCC----c-hhhH
Q 036731 28 KEGFVDKAKELFLQMKD----ENINPNVVT--YNSLIHGFCYAND-------GNEAEYLFIEMMDRGLQS----D-VVTF 89 (259)
Q Consensus 28 ~~~~~~~a~~~~~~~~~----~~~~~~~~~--~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~----~-~~~~ 89 (259)
....+++|.+.|.-+.- .+.++.... +-.+.-.|...|+ +..|++.|.+.....-.| + ....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34456677776655432 233444322 2233334455565 345777777666543222 1 2333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 036731 90 NVIMDELCKNRKMDEATRLLDLMIQGGVR 118 (259)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 118 (259)
-.+.....+.|+.++|.+.|.++...+-.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34566778899999999999999876544
No 442
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.77 E-value=1e+02 Score=23.83 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCChhhHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCcH----
Q 036731 127 IVAYGCLIDGLCKIGKLKNARELSQSLTR----AGLMPNVVTYNI-TIHALCNDEQMDKAHDLFLDMEVKGVAPNC---- 197 (259)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---- 197 (259)
..++..+...|++.++.+.+.+...+... .|.+.|....-. +.-.|....-.++-++..+.|.+.|..-+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 35666666777777776666666555432 344444332211 111222222345555566666666532221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 198 VIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
.+|.-+. +....++.+|..++....
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 2222221 122345566666655544
No 443
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.76 E-value=57 Score=20.92 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=27.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhc
Q 036731 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246 (259)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 246 (259)
+++.+.++...++|.++++-|.+.| ..+...-+.|-..+.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Confidence 3455567777888888888888776 445555555555444443
No 444
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.35 E-value=21 Score=15.86 Aligned_cols=15 Identities=7% Similarity=0.401 Sum_probs=7.5
Q ss_pred ChHHHHHHHHHHhhC
Q 036731 31 FVDKAKELFLQMKDE 45 (259)
Q Consensus 31 ~~~~a~~~~~~~~~~ 45 (259)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344555555555543
No 445
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=53.05 E-value=1.8e+02 Score=26.44 Aligned_cols=140 Identities=9% Similarity=0.041 Sum_probs=67.4
Q ss_pred HhhcCChhHHHHHHHHHHHcCCCCchhh--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHH
Q 036731 61 FCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138 (259)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (259)
.+..|+.+. .+.+.+.|..|+... -.+.+...+..|..+-+. .+.+.|..++.. |..-. +-+...+
T Consensus 532 Aa~~g~~~~----l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~----~Ll~~gadin~~---d~~G~-TpL~~A~ 599 (823)
T PLN03192 532 VASTGNAAL----LEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVL----VLLKHACNVHIR---DANGN-TALWNAI 599 (823)
T ss_pred HHHcCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHH----HHHhcCCCCCCc---CCCCC-CHHHHHH
Confidence 345677654 445556676665433 234555666677755443 334445444321 11222 2233344
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhcCCHHH
Q 036731 139 KIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV---IFTTLMPSFIRKNETSK 215 (259)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~ 215 (259)
..|+.+-+.-+++ .+...+...-...+...+..|+.+-+..++ +.|..++.. -.+.|.. .+..|+.+-
T Consensus 600 ~~g~~~iv~~L~~----~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll----~~Gadin~~d~~G~TpLh~-A~~~g~~~i 670 (823)
T PLN03192 600 SAKHHKIFRILYH----FASISDPHAAGDLLCTAAKRNDLTAMKELL----KQGLNVDSEDHQGATALQV-AMAEDHVDM 670 (823)
T ss_pred HhCCHHHHHHHHh----cCcccCcccCchHHHHHHHhCCHHHHHHHH----HCCCCCCCCCCCCCCHHHH-HHHCCcHHH
Confidence 5566554444432 222222223334566667778876655554 445444332 2333333 345666665
Q ss_pred HHHHHH
Q 036731 216 VIELLR 221 (259)
Q Consensus 216 a~~~~~ 221 (259)
+.-+++
T Consensus 671 v~~Ll~ 676 (823)
T PLN03192 671 VRLLIM 676 (823)
T ss_pred HHHHHH
Confidence 555554
No 446
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=51.81 E-value=1e+02 Score=23.38 Aligned_cols=190 Identities=12% Similarity=-0.017 Sum_probs=119.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHh----hcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH----c
Q 036731 28 KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC----YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK----N 99 (259)
Q Consensus 28 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 99 (259)
..+++..+...+......+.. .....+...|. ...+...|.++|....+.|.. .....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 456677888888777764322 33333443333 345678899999977777643 334445555554 4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036731 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG-------KLKNARELSQSLTRAGLMPNVVTYNITIHAL 172 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (259)
.+..+|...+.+.-+.|..+. ..+...+...|.... +...|...+.+....+ +......+...|
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y 197 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEA------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMY 197 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhH------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 488999999999998886531 123445555554431 2337888888888876 344444444444
Q ss_pred Hh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHhhCCCccchH
Q 036731 173 CN----DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN---------------ETSKVIELLRSMDKRNVMPYAS 233 (259)
Q Consensus 173 ~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~ 233 (259)
.. ..+..+|..+|....+.|. ......+- .+...| +...|...+......+......
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence 32 4478899999999998875 22222222 334333 7778888888888777666555
Q ss_pred HHH
Q 036731 234 ILS 236 (259)
Q Consensus 234 ~~~ 236 (259)
...
T Consensus 274 ~~~ 276 (292)
T COG0790 274 ALR 276 (292)
T ss_pred HHH
Confidence 555
No 447
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=51.77 E-value=53 Score=19.97 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 163 VTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
..--.+...+...|+++.|++.+-.+...
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444444455555555555555444443
No 448
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=51.54 E-value=1e+02 Score=28.35 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchH
Q 036731 176 EQMDKAHDLFLDMEVKGVAPNC-VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 233 (259)
..+.+++++|+.|...|+.+.. ..|......+.+.+.+.+|..+|+.-++....|...
T Consensus 92 e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~r 150 (974)
T KOG1166|consen 92 EELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLER 150 (974)
T ss_pred HHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 3344445555555444443322 223333344444444555555554444443344333
No 449
>PHA02798 ankyrin-like protein; Provisional
Probab=51.31 E-value=1.4e+02 Score=24.87 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCchhh--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHH
Q 036731 69 EAEYLFIEMMDRGLQSDVVT--FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNA 146 (259)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 146 (259)
...++.+.+.+.|..++... -.+.+...+..+.. .-.++.+.+.+.|..++. .+..-++. +..+.+.|.. .-
T Consensus 87 ~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~~Ll~~Gadvn~---~d~~g~tp-L~~a~~~~~~-~~ 160 (489)
T PHA02798 87 HMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI-NNLEILLFMIENGADTTL---LDKDGFTM-LQVYLQSNHH-ID 160 (489)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHHHHHHcCCCccc---cCCCCCcH-HHHHHHcCCc-ch
Confidence 34677777788887665432 12233333333322 234455566666665542 12222222 3344444441 12
Q ss_pred HHHHHHHHHcCCCCC
Q 036731 147 RELSQSLTRAGLMPN 161 (259)
Q Consensus 147 ~~~~~~~~~~~~~~~ 161 (259)
.++.+.+.+.|..++
T Consensus 161 ~~vv~~Ll~~gadin 175 (489)
T PHA02798 161 IEIIKLLLEKGVDIN 175 (489)
T ss_pred HHHHHHHHHhCCCcc
Confidence 334455555665543
No 450
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=50.96 E-value=1.8e+02 Score=25.83 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=53.5
Q ss_pred HHHHHHHHH-hhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC---CC----------CchhhHHHHHHHHHHc
Q 036731 34 KAKELFLQM-KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG---LQ----------SDVVTFNVIMDELCKN 99 (259)
Q Consensus 34 ~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~----------~~~~~~~~l~~~~~~~ 99 (259)
+....+... .+.|+..+......++... .|++..++.+++++...| +. .+......++.++..
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Confidence 334444333 3447777777777777644 589999999998776532 11 122233344555444
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 036731 100 RKMDEATRLLDLMIQGGVRPD 120 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~ 120 (259)
++...++.+++++...|..+.
T Consensus 259 ~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCHH
Confidence 788999999999998887653
No 451
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.85 E-value=1.5e+02 Score=24.92 Aligned_cols=55 Identities=11% Similarity=0.063 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHHHhcC------ChHHHHHHHHHHhhC-CCCC-chHhHHHHHHHHhhcCCh
Q 036731 13 KPNTVTYNTIIDGLCKEG------FVDKAKELFLQMKDE-NINP-NVVTYNSLIHGFCYANDG 67 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~ 67 (259)
-|+...|+..|..|...- .......+|+..... +..+ ....|..+...++..+..
T Consensus 312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~ 374 (568)
T KOG2396|consen 312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA 374 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH
Confidence 355666777776665432 345556666655443 2233 344555555555555443
No 452
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.99 E-value=77 Score=21.29 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCchhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 83 QSDVVTFNVIMDELCKNRK---MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
.++..+-..+..++.+..+ ..+.+.+++.+.+. -.|+. ......-|.-++.+.++++++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~----rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPER----RRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCccc----chhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555666666667766554 45567777777762 23332 2234445566778888888888888887775
No 453
>PRK12356 glutaminase; Reviewed
Probab=49.92 E-value=1.2e+02 Score=23.68 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=9.6
Q ss_pred CCCCchHhHHHHHHH
Q 036731 46 NINPNVVTYNSLIHG 60 (259)
Q Consensus 46 ~~~~~~~~~~~li~~ 60 (259)
|.+|+-..||+++..
T Consensus 93 G~EPSG~~FNsi~~L 107 (319)
T PRK12356 93 GADPTGLPFNSVIAI 107 (319)
T ss_pred CCCCCCCCcchHHHh
Confidence 566777777766544
No 454
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.16 E-value=71 Score=20.39 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 036731 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
-..++|..+.+.+...+.. ...+--+-+..+.+.|++++|+ ..-. ....||...|.+|- -.+.|--+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL--l~~~--~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL--LLPQ--CHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH--HHHT--TS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH--Hhcc--cCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 3578999999999887542 2333333455678999999992 2221 22367777776654 46889999999999
Q ss_pred HHHhhCCCccchHHHH
Q 036731 221 RSMDKRNVMPYASILS 236 (259)
Q Consensus 221 ~~~~~~~~~~~~~~~~ 236 (259)
.++...| .|....|.
T Consensus 93 ~rla~~g-~~~~q~Fa 107 (116)
T PF09477_consen 93 TRLASSG-SPELQAFA 107 (116)
T ss_dssp HHHCT-S-SHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 8887765 44444443
No 455
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.33 E-value=1.2e+02 Score=22.96 Aligned_cols=118 Identities=14% Similarity=-0.048 Sum_probs=77.4
Q ss_pred cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhh----cCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC----
Q 036731 29 EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY----ANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR---- 100 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 100 (259)
..+..+|.++|+.+-+.|.. .....|...|.. ..+..+|...+....+.|..+.......+...|..-.
T Consensus 90 ~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 90 SRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 34577899999977776633 333335444444 4588999999999999986654333444444444431
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 036731 101 ---KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK----IGKLKNARELSQSLTRAGL 158 (259)
Q Consensus 101 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 158 (259)
+...|...+.+.-..+.. .....+...|.. ..+.++|...|+...+.|.
T Consensus 167 ~~~~~~~A~~~~~~aa~~~~~---------~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 167 VAYDDKKALYLYRKAAELGNP---------DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred ccHHHHhHHHHHHHHHHhcCH---------HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 234788888888777632 455555555533 3478899999999988874
No 456
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.06 E-value=46 Score=17.90 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=12.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC
Q 036731 204 MPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
.-++.+.|++++|.+..+.+++.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
Confidence 34455666666666666665543
No 457
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.25 E-value=54 Score=25.82 Aligned_cols=90 Identities=19% Similarity=0.078 Sum_probs=62.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch-hhHHHHHHHHHHcCCHHHHH
Q 036731 28 KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV-VTFNVIMDELCKNRKMDEAT 106 (259)
Q Consensus 28 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 106 (259)
..|.++.|++.|...+..+ ++....|..-.+++.+.+++..|++=++..... .||. .-|-.--.+-...|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4677888888888777663 445666666777788888888888887777665 3332 22322333344578899999
Q ss_pred HHHHHHHhCCCCCC
Q 036731 107 RLLDLMIQGGVRPD 120 (259)
Q Consensus 107 ~~~~~~~~~~~~~~ 120 (259)
..+....+.++.+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 99988888877653
No 458
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=45.88 E-value=1.1e+02 Score=22.02 Aligned_cols=29 Identities=14% Similarity=0.005 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDE 45 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 45 (259)
...+.+++.|...|+++.|-++|.-+.+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 35667888888888888888888888765
No 459
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.85 E-value=1.5e+02 Score=23.42 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=51.3
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHH----cCCCCchhhHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCCccch
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMD----RGLQSDVVTFNVIMDE-LCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (259)
...+-.....|++-||-+.|++.+....+ .|.+.|...+..=+.. |....-..+.++..+.+.+.|..-+. ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR--rN 181 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER--RN 181 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh--hh
Confidence 34455556677788888877777765543 3555565554433322 33333334444444555555544331 11
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
-..+|..+ .|....++.+|-.+|-+...
T Consensus 182 RlKvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 182 RLKVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 12333332 23344567777777766543
No 460
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.64 E-value=79 Score=26.12 Aligned_cols=103 Identities=16% Similarity=0.045 Sum_probs=56.9
Q ss_pred HHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH-HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHH
Q 036731 59 HGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM-DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137 (259)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (259)
+.+...++++.|..++.+..+. .||...|-..= .++.+.+++..|+.=+....+.. |. -...|..=..++
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~-----~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PT-----YIKAYVRRGTAV 82 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--ch-----hhheeeeccHHH
Confidence 3445556677777777766654 56666665555 45556666666655554444432 32 124444444555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036731 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172 (259)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (259)
.+.+.+.+|+..|+.... +.|+..-....+.-|
T Consensus 83 m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 555566666666665554 345555555555444
No 461
>PRK10941 hypothetical protein; Provisional
Probab=45.35 E-value=1.4e+02 Score=22.82 Aligned_cols=78 Identities=9% Similarity=0.006 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CccchHHHHHHHHHHHH
Q 036731 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN-VMPYASILSIIVDLLVK 244 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 244 (259)
+.+-.+|.+.++++.|+.+.+.+.... +-++.-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+.....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 445556666777777777777766552 2233334444445666777777766666655432 23445555555544443
No 462
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.73 E-value=89 Score=20.53 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHH
Q 036731 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQ 151 (259)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (259)
+..++|..|...++... ....|......+-..|++.+|..+|+
T Consensus 81 dp~~if~~L~~~~IG~~-----~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTK-----LALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchh-----hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35778888888887654 45777888888888999999998886
No 463
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.41 E-value=1.6e+02 Score=23.39 Aligned_cols=65 Identities=8% Similarity=0.089 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNV----VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 208 (259)
-.+++..++..+.+. .|+. .-|-.+.+.....|.++.++.+|++.+..|..|-...-..++..+.
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 356788888887765 3453 3577788888889999999999999999999998877777777665
No 464
>PRK09857 putative transposase; Provisional
Probab=44.13 E-value=1.5e+02 Score=22.93 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=47.3
Q ss_pred HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 036731 52 VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119 (259)
Q Consensus 52 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 119 (259)
..+..++....+.++.++..++++.+.+. .+.......++..-+...|.-+++.++..+|...|...
T Consensus 207 ~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 207 RQIKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33566676666778887778888777765 33344455567777777787778888888888888764
No 465
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=43.32 E-value=64 Score=19.64 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcc
Q 036731 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSI 252 (259)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 252 (259)
-.-|-+.|-.+.+.+++....... -...+...|+.++..++.-.-|.
T Consensus 39 ~~~y~r~gL~EqvyQ~L~~W~~~e--g~~Atv~~Lv~AL~~c~l~~lAe 85 (90)
T cd08780 39 AYEYDREGLYEQAYQLLRRFIQSE--GKKATLQRLVQALEENGLTSLAE 85 (90)
T ss_pred HhhcccccHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHccchHHHH
Confidence 334444555555555555544321 12245555555555555443333
No 466
>PRK09857 putative transposase; Provisional
Probab=43.14 E-value=1.5e+02 Score=22.84 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccc
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (259)
+..++.-....++.++..++++.+.+. .+........+..-+.+.|.-+++.++.++|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455665556667777777777777655 333444555666667777777788888899988887654
No 467
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.02 E-value=73 Score=19.02 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=14.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 204 MPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
++.+.++.-.++|.++++-|.++|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344455566666666666666655
No 468
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=42.64 E-value=60 Score=18.79 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=24.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 036731 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 211 (259)
...++.+.+.+++++..+.|..|.......+.-+..+.|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345777888888888887777766655555555554433
No 469
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=42.56 E-value=1.1e+02 Score=22.47 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcC---------ChHHHHHHHHHHhhCCCCC-chHhHHHHHHHHhhcCChhHHHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEG---------FVDKAKELFLQMKDENINP-NVVTYNSLIHGFCYANDGNEAEYLFIE 76 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 76 (259)
...-|..+..+|++.| +.+.-.++++..++.|++. =++.|.++|+--.-.-+++++.+++..
T Consensus 162 ~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 162 HLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred cHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHH
Confidence 3444555555555554 2333344444444444331 133444444433333344444444433
No 470
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.39 E-value=1.3e+02 Score=21.89 Aligned_cols=96 Identities=7% Similarity=-0.091 Sum_probs=53.9
Q ss_pred HhhcCChhHHHHHHHHHHH----cCCCCch--hhHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCCccchhH
Q 036731 61 FCYANDGNEAEYLFIEMMD----RGLQSDV--VTFNVIMDELCKNRK-------MDEATRLLDLMIQGGVRPDAFCEINI 127 (259)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+.....+++|.+.|.-..- .+.+|.. ..+..+...|...|+ ...|.+.|.+.......|.. .....
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~~~~~ 165 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-GMDEA 165 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-CchHH
Confidence 3445556666665544331 2233332 233444555666666 34566666666654433322 11133
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAG 157 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (259)
.+.-.+.....+.|+.++|.+.|..+...+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 445566677778889999999988888764
No 471
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.28 E-value=1.3e+02 Score=21.55 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhcCCCCc--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcc
Q 036731 178 MDKAHDLFLDMEVKGVAPN--CVIF-----TTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247 (259)
Q Consensus 178 ~~~a~~~~~~~~~~~~~p~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 247 (259)
.+.|+.+|+.+.+.--.|. .... ...+-.|.+.|.+++|.+++++.... |+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 4567777777765522221 1112 23345788999999999999987752 344444554444444443
No 472
>COG0819 TenA Putative transcription activator [Transcription]
Probab=41.98 E-value=1.4e+02 Score=21.95 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=13.0
Q ss_pred ccCCHHHHHHHHHHHHhcCChHH
Q 036731 12 CKPNTVTYNTIIDGLCKEGFVDK 34 (259)
Q Consensus 12 ~~~~~~~~~~ll~~~~~~~~~~~ 34 (259)
+.|...+|...|...+..|++.+
T Consensus 105 ~~~~~~aYt~ym~~~~~~g~~~~ 127 (218)
T COG0819 105 PSPANKAYTRYLLDTAYSGSFAE 127 (218)
T ss_pred CCchHHHHHHHHHHHHhcCCHHH
Confidence 44555556666666666665443
No 473
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.91 E-value=3.2e+02 Score=26.14 Aligned_cols=161 Identities=12% Similarity=0.013 Sum_probs=95.2
Q ss_pred HHHHhcCChHHHHH------HHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHH-------HcCCCCchhhHH
Q 036731 24 DGLCKEGFVDKAKE------LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM-------DRGLQSDVVTFN 90 (259)
Q Consensus 24 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~ 90 (259)
......|.+.++.+ ++...-..-.++....|..+-..+.+.++.++|+..-.... .....-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33445566666665 55432222234456677888888899999999887654432 111222445566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC--CCCh
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-----GL--MPNV 162 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~ 162 (259)
.+...+...+....|...+.+.... ++.-....++...+++.+-..+...++.+.|.++.+...+. |. -++.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666777888888877766532 11111111234455566655566668899999998887653 11 1244
Q ss_pred hhHHHHHHHHHhcCChhHHHHH
Q 036731 163 VTYNITIHALCNDEQMDKAHDL 184 (259)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~ 184 (259)
.++..+.+.+...+++..|...
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHH
Confidence 5666666666666666655443
No 474
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=41.87 E-value=1.8e+02 Score=23.12 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH-HHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA-HDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
...-+.+.|++.++-+.+..+-+.+... |. .....+..++....-.+.. ..+.+.+... ||......++++.
T Consensus 168 GLQGIAD~~aRl~~~~~~~~l~~al~~l---P~-~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAl 240 (340)
T PF12069_consen 168 GLQGIADICARLDQEDNAQLLRKALPHL---PP-EVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRAL 240 (340)
T ss_pred hhhHHHHHHHHhcccchHHHHHHHHhhC---Ch-HHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 3444556677777666655555554442 22 2334444444433332222 2233333322 6666666777766
Q ss_pred HhcCCHHHHHHHHHHHhhC
Q 036731 208 IRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~ 226 (259)
+...........+..+...
T Consensus 241 s~~~~~~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 241 SSAPASDLVAILIDALLQS 259 (340)
T ss_pred cCCCchhHHHHHHHHHhcC
Confidence 6655555444445555443
No 475
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.87 E-value=1.5e+02 Score=22.28 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=56.9
Q ss_pred hhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc-C-----------CCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 036731 43 KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-G-----------LQSDVVTFNVIMDELCKNRKMDEATRLLD 110 (259)
Q Consensus 43 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 110 (259)
...+++-+..-...++ +...||..+|+.-++.-... | -.|.+.....++..|.. +++++|.+++.
T Consensus 186 k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~ 262 (333)
T KOG0991|consen 186 KAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILA 262 (333)
T ss_pred HHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 3344444444444443 35678888888877655421 1 24566666667766654 57899999999
Q ss_pred HHHhCCCCCCCccchhHHHHHHHHHHHHhc
Q 036731 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140 (259)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (259)
++.+.|+.|. ...+.+.+.+-..
T Consensus 263 ~lw~lgysp~-------Dii~~~FRv~K~~ 285 (333)
T KOG0991|consen 263 ELWKLGYSPE-------DIITTLFRVVKNM 285 (333)
T ss_pred HHHHcCCCHH-------HHHHHHHHHHHhc
Confidence 9999999875 4556666665444
No 476
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.80 E-value=2.4e+02 Score=24.68 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=48.4
Q ss_pred hhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC-------------CchhhHHHHHHHHHHcCCHHHHHHHH
Q 036731 43 KDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ-------------SDVVTFNVIMDELCKNRKMDEATRLL 109 (259)
Q Consensus 43 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~a~~~~ 109 (259)
.+.|+..+......++. ...|+...++.++++....|.. ++......++.++. .|+...++.++
T Consensus 197 ~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~-~~d~~~al~~l 273 (618)
T PRK14951 197 AAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA-QGDGRTVVETA 273 (618)
T ss_pred HHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 34577777766666665 3458888888888766543311 12233334444444 47888999999
Q ss_pred HHHHhCCCCCC
Q 036731 110 DLMIQGGVRPD 120 (259)
Q Consensus 110 ~~~~~~~~~~~ 120 (259)
+++...|..+.
T Consensus 274 ~~l~~~G~~~~ 284 (618)
T PRK14951 274 DELRLNGLSAA 284 (618)
T ss_pred HHHHHcCCCHH
Confidence 99988877654
No 477
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=41.69 E-value=75 Score=21.32 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=32.0
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
|...++ .+-+.|-+.+...++++|.+.|+..+...++..+.-.
T Consensus 112 tlGvL~-~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLA-LAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHH-HHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 444444 4456688888889999999999888888888777643
No 478
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=40.13 E-value=83 Score=21.13 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=25.8
Q ss_pred HcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 036731 79 DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPD 120 (259)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 120 (259)
..|.+. ..|...++ .+-+.|-..+...+++++.+.|+..+
T Consensus 104 ~lgL~V-~GtlGvL~-~ak~kgLisk~Kpild~LI~~GF~iS 143 (157)
T COG2405 104 SLGLKV-TGTLGVLA-LAKSKGLISKDKPILDELIEKGFRIS 143 (157)
T ss_pred HcCCee-eehhHHHH-HHHHcCcccchHHHHHHHHHhcCccc
Confidence 445442 33444344 44556778888899999998888754
No 479
>PRK10941 hypothetical protein; Provisional
Probab=39.94 E-value=1.7e+02 Score=22.34 Aligned_cols=80 Identities=10% Similarity=-0.063 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCcHHHHHHHHH
Q 036731 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFTTLMP 205 (259)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~ 205 (259)
....+.+-.+|.+.++++.|+.+.+.+..... .+..-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 34666777788899999999999999988642 24555666666788899999998888887765 23444555555554
Q ss_pred HH
Q 036731 206 SF 207 (259)
Q Consensus 206 ~~ 207 (259)
..
T Consensus 260 ~l 261 (269)
T PRK10941 260 SI 261 (269)
T ss_pred HH
Confidence 44
No 480
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.35 E-value=3e+02 Score=24.71 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
|-.+.+++....+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 455667777888888888888888764
No 481
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=38.32 E-value=2.3e+02 Score=26.40 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=45.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV 163 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 163 (259)
....+.+++.+|..|...|+... ....|-.....+.+.+.+.+|..+|+.-.+..-.|...
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~-----lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~r 150 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTT-----LALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLER 150 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 55567788888888888877765 35677777778888888888888888877665555443
No 482
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.93 E-value=86 Score=18.41 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=41.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchh---hHHHHHHHHHHcC
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV---TFNVIMDELCKNR 100 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 100 (259)
...++.|+++-+..+++ .+...+. -+..+...+..|+. ++++.+.+.|..++.. -++ .+...+..|
T Consensus 2 ~~A~~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~ 70 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLE----KGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNT-ALHYAAENG 70 (89)
T ss_dssp HHHHHTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSB-HHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCC-HHHHHHHcC
Confidence 34567777766655555 3333332 11244455566765 4455555676666543 233 333345555
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 036731 101 KMDEATRLLDLMIQGGVRPD 120 (259)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~ 120 (259)
..+ +++.+.+.|..++
T Consensus 71 ~~~----~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 71 NLE----IVKLLLEHGADVN 86 (89)
T ss_dssp HHH----HHHHHHHTTT-TT
T ss_pred CHH----HHHHHHHcCCCCC
Confidence 544 4455556666553
No 483
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=37.88 E-value=1.4e+02 Score=20.95 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=4.9
Q ss_pred HHHHHHHhCCC
Q 036731 107 RLLDLMIQGGV 117 (259)
Q Consensus 107 ~~~~~~~~~~~ 117 (259)
.+.+.+.+.|+
T Consensus 89 rl~qeL~qkGi 99 (174)
T COG2137 89 RLKQELKQKGI 99 (174)
T ss_pred HHHHHHHHcCC
Confidence 34444444443
No 484
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.81 E-value=3.7e+02 Score=25.67 Aligned_cols=131 Identities=9% Similarity=0.050 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (259)
.-|...++.+-+.+..+.+.++-...++. ..++. +.-..+++.+.+.....|.+-+|...+-.-... ..-.....
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~--ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLR 1058 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDN--PSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcc--hhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHH
Confidence 34667788888888888888877666543 22221 113456778888888888888887665432211 11122445
Q ss_pred HHHHHHHhcCChh------------HHHH-HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036731 167 ITIHALCNDEQMD------------KAHD-LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRS 222 (259)
Q Consensus 167 ~li~~~~~~~~~~------------~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (259)
.++..++.+|.++ +... +++..-.....-....|+.|-..+...+++.+|..+.-+
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 5666666666543 3333 222222221111234566666777888999888776544
No 485
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.53 E-value=2.2e+02 Score=23.04 Aligned_cols=53 Identities=8% Similarity=-0.092 Sum_probs=36.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHH----HHHh--hcCChhHHHHHHHH
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLI----HGFC--YANDGNEAEYLFIE 76 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~--~~~~~~~a~~~~~~ 76 (259)
..+.+.+++..|.++|+++.+...++....+...+ .+|. ..-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35667899999999999999886555554433333 3332 34567788888875
No 486
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=37.48 E-value=79 Score=17.88 Aligned_cols=31 Identities=6% Similarity=0.010 Sum_probs=12.1
Q ss_pred HHHHHHHHhhCCCccchHHHHHHHHHHHHhc
Q 036731 216 VIELLRSMDKRNVMPYASILSIIVDLLVKNE 246 (259)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 246 (259)
...+.+.+...|...+..+....+.+..+.|
T Consensus 16 ~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 16 RKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3333333333333333344444444443333
No 487
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.45 E-value=80 Score=19.00 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=5.9
Q ss_pred HHHHHHHHHhcCCHH
Q 036731 200 FTTLMPSFIRKNETS 214 (259)
Q Consensus 200 ~~~l~~~~~~~~~~~ 214 (259)
...|+.++.+.|.-+
T Consensus 66 ~~~L~~aL~~~~~~d 80 (86)
T cd08318 66 PETLITALNAAGLNE 80 (86)
T ss_pred HHHHHHHHHHcCcHH
Confidence 334444444443333
No 488
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.44 E-value=2.2e+02 Score=22.88 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=21.3
Q ss_pred CCchHhHHHHHHHHhhcCChhHHHHHHHHHH
Q 036731 48 NPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78 (259)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 78 (259)
+-...++-.+-..+...|+.+.|.+++++..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666667777788888777777766654
No 489
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.75 E-value=2.3e+02 Score=22.94 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=25.5
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCchh--hHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 036731 62 CYANDGNEAEYLFIEMMDRGLQSDVV--TFNVIMDELCK--NRKMDEATRLLDLMIQ 114 (259)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~ 114 (259)
.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666554 333333 23333333332 3445556555555443
No 490
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.63 E-value=1.6e+02 Score=24.46 Aligned_cols=90 Identities=10% Similarity=0.038 Sum_probs=62.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHh-HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVT-YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR 100 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (259)
-+..+.+.++++.|..++.+.++. .||-.. |..--.++.+.+++..|+.=+..+.+.... ....|.-=..+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 355667788999999999999876 565444 444447888999999998888777776311 2223333344566667
Q ss_pred CHHHHHHHHHHHHh
Q 036731 101 KMDEATRLLDLMIQ 114 (259)
Q Consensus 101 ~~~~a~~~~~~~~~ 114 (259)
.+.+|+..|+....
T Consensus 87 ~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK 100 (476)
T ss_pred HHHHHHHHHHHhhh
Confidence 77788887777655
No 491
>PHA02798 ankyrin-like protein; Provisional
Probab=36.04 E-value=2.6e+02 Score=23.40 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCCchh---hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHH
Q 036731 72 YLFIEMMDRGLQSDVV---TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148 (259)
Q Consensus 72 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (259)
++.+.+.+.|..++.. -.+.|..++.....+....++.+.+.+.|..++.. +..-.+.+. ..+..+.. .-.+
T Consensus 52 ~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~---d~~G~TpLh-~a~~~~~~-~~~~ 126 (489)
T PHA02798 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKK---NSDGETPLY-CLLSNGYI-NNLE 126 (489)
T ss_pred HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCC---CCCcCcHHH-HHHHcCCc-ChHH
Confidence 4556666777666531 11222222211112233467777778888766531 222233333 33333322 2345
Q ss_pred HHHHHHHcCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 036731 149 LSQSLTRAGLMPNVV---TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 196 (259)
+++.+.+.|..++.. -++. +..+.+.|.. .-.++.+.+.+.|..++
T Consensus 127 iv~~Ll~~Gadvn~~d~~g~tp-L~~a~~~~~~-~~~~vv~~Ll~~gadin 175 (489)
T PHA02798 127 ILLFMIENGADTTLLDKDGFTM-LQVYLQSNHH-IDIEIIKLLLEKGVDIN 175 (489)
T ss_pred HHHHHHHcCCCccccCCCCCcH-HHHHHHcCCc-chHHHHHHHHHhCCCcc
Confidence 566666777655432 2333 3344444441 12234445556666554
No 492
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.65 E-value=2.2e+02 Score=22.38 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHhcCChhHHH
Q 036731 162 VVTYNITIHALCNDEQMDKAH 182 (259)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~ 182 (259)
..+|..|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 446888999999999877654
No 493
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=35.61 E-value=1.5e+02 Score=23.01 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=30.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHhcCChhHHHHHHHHHHhc
Q 036731 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT--IHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
...+...+.++.|+..++........|-...+..| .+.|...|..+-|..++..+.+.
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555566666666666653322122223333222 34455666666666666665543
No 494
>PHA03100 ankyrin repeat protein; Provisional
Probab=35.38 E-value=2.6e+02 Score=23.17 Aligned_cols=205 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred cccccccCCHHHHHH--HHHH-----HHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 036731 7 EFGVVCKPNTVTYNT--IIDG-----LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 7 ~~~~~~~~~~~~~~~--ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 79 (259)
+++.|..|+....+. .+.. .+..|+.+-+.-+++.-..- -.++....+.+..+.. ....-.++++.+.+
T Consensus 54 Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~---~~~~~~~iv~~Ll~ 129 (480)
T PHA03100 54 LLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAIS---KKSNSYSIVEYLLD 129 (480)
T ss_pred HHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHh---cccChHHHHHHHHH
Q ss_pred cCCCCchhhHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036731 80 RGLQSDVVTFN--VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157 (259)
Q Consensus 80 ~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (259)
.|..++..... +.+...+..|. .-.++++.+.+.|..++. ....-.+.+...+..| -.++++.+.+.|
T Consensus 130 ~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~----~d~~g~tpL~~A~~~~----~~~iv~~Ll~~g 199 (480)
T PHA03100 130 NGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINA----KNRYGYTPLHIAVEKG----NIDVIKFLLDNG 199 (480)
T ss_pred cCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCccc----ccCCCCCHHHHHHHhC----CHHHHHHHHHcC
Q ss_pred CCCChhhH--------HHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 158 LMPNVVTY--------NITIHALCNDEQ--MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 158 ~~~~~~~~--------~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
..++.... ...+...+..|+ .+-+..+++.-..-+ .+|....+.|..+..... .++++.+.+.|
T Consensus 200 a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din-~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~g 273 (480)
T PHA03100 200 ADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN-IKDVYGFTPLHYAVYNNN-----PEFVKYLLDLG 273 (480)
T ss_pred CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCC-----HHHHHHHHHcC
Q ss_pred Cccc
Q 036731 228 VMPY 231 (259)
Q Consensus 228 ~~~~ 231 (259)
..++
T Consensus 274 ad~n 277 (480)
T PHA03100 274 ANPN 277 (480)
T ss_pred CCCC
No 495
>PRK10304 ferritin; Provisional
Probab=35.32 E-value=1.5e+02 Score=20.53 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHcCCH
Q 036731 87 VTFNVIMDELCKNRKM 102 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~ 102 (259)
..++.++..+.+.+|+
T Consensus 99 ~~i~~l~~~A~~~~D~ 114 (165)
T PRK10304 99 QKINELAHAAMTNQDY 114 (165)
T ss_pred HHHHHHHHHHHHcCCH
Confidence 3444555555555554
No 496
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=35.08 E-value=1.3e+02 Score=19.78 Aligned_cols=67 Identities=13% Similarity=-0.048 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036731 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG----LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (259)
.|-...|-.+-..|..-.+.+++...|......- ..|+....-.-+......|++-+|++.++.+..
T Consensus 49 TP~rrlYf~vQ~m~i~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~l~~~~~~v~~g~~y~ALk~~R~L~~ 119 (126)
T PF07378_consen 49 TPLRRLYFAVQLMYIDPEDADEARDLYRRLLEELLQAFADPDAREGLDEANELVEAGRYYKALKALRKLIP 119 (126)
T ss_pred CHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHCCcHHHHHHHHHHhHH
Confidence 3455677777777776677777776666554331 234444444445556677777777777776653
No 497
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=34.71 E-value=3.1e+02 Score=24.37 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=42.4
Q ss_pred CCCCChhhHHHHHHHHHhcCC----hhHHHHHHHHHHhc----CCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHH
Q 036731 157 GLMPNVVTYNITIHALCNDEQ----MDKAHDLFLDMEVK----GVAPNCVI---FTTLMPSFIRKNETSKVIELLRS 222 (259)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~~~~~----~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~ 222 (259)
|.+.|...|..|+.++....+ .+++.++++.++.. |+.+..+. -..++.-|+..|+.+-.......
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~ 288 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQ 288 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 677889999999998776433 46666777666543 66654322 23466778888876554333333
No 498
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.45 E-value=1.8e+02 Score=22.87 Aligned_cols=76 Identities=8% Similarity=0.051 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHH-HHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNS-LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (259)
.|+..|...+.-..+.|.+.+...+|.+..+. .|.|+..|-. .-.-+...++++.+..+|..-.+.+.. ++..|..
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~e 181 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK-HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWIE 181 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHHH
Confidence 47888888888888889999999999999876 3556666643 233455678899999999887766433 4444443
No 499
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.28 E-value=2.2e+02 Score=22.12 Aligned_cols=102 Identities=11% Similarity=0.103 Sum_probs=60.5
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCC
Q 036731 84 SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID---GLCKIGKLKNARELSQSLTRAGLMP 160 (259)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (259)
-....+..+..-|++.++.+.+.++..+.......... -..++-+.++ .|....-+++-++..+.|.+.|...
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~----KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL----KIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc----chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 34567888999999999999998887766543222111 1123333333 2334444677788888888887543
Q ss_pred Chh----hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 161 NVV----TYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 161 ~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
+.. +|.-+- +....++.+|-.++-+....
T Consensus 189 eRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 189 ERRNRYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 322 333222 22345677777777666543
No 500
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.26 E-value=59 Score=15.43 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 036731 181 AHDLFLDM 188 (259)
Q Consensus 181 a~~~~~~~ 188 (259)
|..+|++.
T Consensus 6 AR~IyeR~ 13 (32)
T PF02184_consen 6 ARSIYERF 13 (32)
T ss_pred HHHHHHHH
Confidence 33333333
Done!