Query 036731
Match_columns 259
No_of_seqs 481 out of 1158
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 07:46:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.3E-38 4.5E-43 254.4 23.7 212 33-250 7-228 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.1E-37 3.9E-42 249.0 24.5 195 10-210 19-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.7E-26 5.8E-31 189.9 24.6 245 3-258 290-542 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.1E-24 3.9E-29 179.0 26.1 245 3-258 323-576 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.5E-20 1.2E-24 144.7 26.6 233 14-257 65-330 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5E-20 1.7E-24 143.8 27.1 237 15-258 100-365 (388)
7 3spa_A Mtrpol, DNA-directed RN 99.9 3.4E-22 1.1E-26 166.1 11.1 130 126-255 126-259 (1134)
8 2y4t_A DNAJ homolog subfamily 99.9 1.6E-19 5.3E-24 143.5 25.8 233 14-258 24-283 (450)
9 3spa_A Mtrpol, DNA-directed RN 99.9 5.9E-22 2E-26 164.6 11.3 150 16-176 127-286 (1134)
10 4eqf_A PEX5-related protein; a 99.9 7.1E-20 2.4E-24 141.8 22.4 240 14-257 63-306 (365)
11 2y4t_A DNAJ homolog subfamily 99.9 5.8E-19 2E-23 140.2 25.3 235 15-257 59-354 (450)
12 1fch_A Peroxisomal targeting s 99.9 3.2E-18 1.1E-22 132.4 27.9 239 15-257 63-355 (368)
13 3hym_B Cell division cycle pro 99.8 3.8E-18 1.3E-22 129.9 25.6 235 12-257 18-261 (330)
14 3hym_B Cell division cycle pro 99.8 4.6E-18 1.6E-22 129.4 25.0 233 15-258 55-296 (330)
15 4eqf_A PEX5-related protein; a 99.8 2E-18 6.7E-23 133.7 21.0 244 4-256 84-351 (365)
16 2pl2_A Hypothetical conserved 99.8 4E-18 1.4E-22 122.4 21.1 199 48-258 2-211 (217)
17 3cv0_A Peroxisome targeting si 99.8 3.9E-18 1.3E-22 129.7 22.1 239 15-257 20-311 (327)
18 3mkr_A Coatomer subunit epsilo 99.8 2.8E-18 9.6E-23 128.6 19.5 221 17-257 35-260 (291)
19 2ho1_A Type 4 fimbrial biogene 99.8 8.2E-17 2.8E-21 118.1 26.4 203 16-227 37-239 (252)
20 3ieg_A DNAJ homolog subfamily 99.8 5.7E-17 1.9E-21 124.7 26.6 233 15-257 2-259 (359)
21 3cv0_A Peroxisome targeting si 99.8 9E-18 3.1E-22 127.7 21.7 202 50-257 20-265 (327)
22 2pl2_A Hypothetical conserved 99.8 1.8E-17 6.1E-22 119.0 21.8 200 13-224 2-212 (217)
23 3uq3_A Heat shock protein STI1 99.8 1.5E-17 5E-22 122.3 20.8 223 15-257 4-232 (258)
24 2vq2_A PILW, putative fimbrial 99.8 3E-16 1E-20 112.8 26.5 214 14-237 6-220 (225)
25 1b89_A Protein (clathrin heavy 99.8 1.3E-19 4.3E-24 139.9 8.9 214 1-257 19-232 (449)
26 2gw1_A Mitochondrial precursor 99.8 9.7E-18 3.3E-22 135.3 19.8 249 4-257 25-363 (514)
27 3ieg_A DNAJ homolog subfamily 99.8 2.4E-16 8.2E-21 121.2 26.6 229 15-257 70-331 (359)
28 3mkr_A Coatomer subunit epsilo 99.8 3.3E-17 1.1E-21 122.8 21.1 230 8-255 57-288 (291)
29 1ouv_A Conserved hypothetical 99.8 1.3E-15 4.4E-20 113.1 29.6 219 15-257 5-247 (273)
30 2gw1_A Mitochondrial precursor 99.8 4.5E-17 1.5E-21 131.4 20.7 231 15-257 236-474 (514)
31 2q7f_A YRRB protein; TPR, prot 99.8 1.4E-16 4.8E-21 116.0 20.4 203 14-227 21-223 (243)
32 3u4t_A TPR repeat-containing p 99.8 1.6E-16 5.5E-21 117.8 20.3 232 16-257 3-246 (272)
33 2h6f_A Protein farnesyltransfe 99.8 5.6E-16 1.9E-20 120.1 22.6 231 15-258 96-344 (382)
34 3fp2_A TPR repeat-containing p 99.8 7.9E-16 2.7E-20 124.8 24.4 229 17-257 244-487 (537)
35 1fch_A Peroxisomal targeting s 99.7 7.2E-16 2.4E-20 119.2 22.2 222 26-257 35-310 (368)
36 2ho1_A Type 4 fimbrial biogene 99.7 1.1E-15 3.7E-20 112.0 22.0 198 51-258 37-235 (252)
37 3fp2_A TPR repeat-containing p 99.7 4.6E-16 1.6E-20 126.2 21.5 244 2-257 42-403 (537)
38 2vq2_A PILW, putative fimbrial 99.7 2.4E-15 8.3E-20 108.0 21.5 201 49-258 6-208 (225)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.2E-15 1.1E-19 110.8 22.6 225 15-255 42-269 (275)
40 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.5E-16 2.2E-20 114.6 18.8 219 27-257 16-240 (275)
41 2q7f_A YRRB protein; TPR, prot 99.7 5.9E-16 2E-20 112.7 17.6 198 49-257 21-218 (243)
42 1b89_A Protein (clathrin heavy 99.7 1.8E-16 6.3E-21 122.4 12.8 216 2-255 49-266 (449)
43 4abn_A Tetratricopeptide repea 99.7 5.8E-15 2E-19 118.1 20.9 215 32-259 84-319 (474)
44 3vtx_A MAMA; tetratricopeptide 99.7 4.3E-14 1.5E-18 98.5 21.9 165 16-190 5-169 (184)
45 3uq3_A Heat shock protein STI1 99.7 2.4E-14 8.3E-19 104.9 21.4 195 14-226 36-236 (258)
46 3nf1_A KLC 1, kinesin light ch 99.7 4.8E-15 1.6E-19 111.8 17.9 237 15-257 26-303 (311)
47 3vtx_A MAMA; tetratricopeptide 99.7 6.3E-14 2.1E-18 97.7 22.2 171 50-232 4-174 (184)
48 2ond_A Cleavage stimulation fa 99.7 1.3E-13 4.5E-18 104.2 24.9 215 33-257 33-266 (308)
49 1ouv_A Conserved hypothetical 99.7 6.4E-14 2.2E-18 104.0 22.5 203 4-227 25-252 (273)
50 3nf1_A KLC 1, kinesin light ch 99.6 1.2E-14 4.2E-19 109.5 17.1 172 49-225 25-223 (311)
51 3u4t_A TPR repeat-containing p 99.6 3E-13 1E-17 100.0 22.6 199 51-257 3-204 (272)
52 2h6f_A Protein farnesyltransfe 99.6 6.7E-13 2.3E-17 102.9 24.2 217 15-244 130-365 (382)
53 3ulq_A Response regulator aspa 99.6 1.1E-13 3.8E-18 107.8 19.9 233 22-257 109-364 (383)
54 2ond_A Cleavage stimulation fa 99.6 1.8E-12 6.3E-17 97.9 26.1 212 6-227 37-271 (308)
55 4abn_A Tetratricopeptide repea 99.6 7.1E-14 2.4E-18 111.8 17.8 199 14-223 100-318 (474)
56 4a1s_A PINS, partner of inscut 99.6 7.5E-14 2.6E-18 109.5 16.7 239 17-257 49-328 (411)
57 4a1s_A PINS, partner of inscut 99.6 2.3E-14 7.9E-19 112.4 13.2 240 17-257 87-368 (411)
58 3as5_A MAMA; tetratricopeptide 99.6 1.2E-12 4.2E-17 90.8 19.9 163 17-189 9-171 (186)
59 2xm6_A Protein corresponding t 99.6 1.5E-11 5.1E-16 98.9 28.6 218 15-256 38-283 (490)
60 4gyw_A UDP-N-acetylglucosamine 99.6 6.5E-13 2.2E-17 110.7 20.8 166 15-190 8-173 (723)
61 3sf4_A G-protein-signaling mod 99.6 1.1E-13 3.8E-18 108.1 15.5 243 13-257 6-292 (406)
62 2xm6_A Protein corresponding t 99.6 2.2E-11 7.4E-16 98.0 28.6 218 15-256 74-320 (490)
63 3sf4_A G-protein-signaling mod 99.6 1.9E-13 6.6E-18 106.8 16.2 241 16-257 47-332 (406)
64 3ro2_A PINS homolog, G-protein 99.6 1.9E-13 6.4E-18 103.9 15.6 240 16-257 5-288 (338)
65 3edt_B KLC 2, kinesin light ch 99.6 3.1E-13 1E-17 100.3 16.3 228 27-257 12-277 (283)
66 3ro2_A PINS homolog, G-protein 99.6 8E-14 2.7E-18 106.0 13.1 241 16-257 43-328 (338)
67 3as5_A MAMA; tetratricopeptide 99.5 2.1E-12 7.2E-17 89.6 19.3 166 51-226 8-173 (186)
68 4i17_A Hypothetical protein; T 99.5 8.3E-12 2.8E-16 90.0 22.5 198 14-227 5-210 (228)
69 4gyw_A UDP-N-acetylglucosamine 99.5 1.4E-12 4.7E-17 108.8 20.3 166 50-225 8-173 (723)
70 3q15_A PSP28, response regulat 99.5 1.8E-12 6.3E-17 100.7 19.8 232 22-257 107-361 (378)
71 3edt_B KLC 2, kinesin light ch 99.5 2.5E-13 8.6E-18 100.8 13.6 159 62-225 12-197 (283)
72 4i17_A Hypothetical protein; T 99.5 1.3E-11 4.5E-16 88.9 21.2 165 14-191 40-209 (228)
73 3qky_A Outer membrane assembly 99.5 1.6E-11 5.4E-16 90.4 21.1 200 49-256 13-256 (261)
74 2ooe_A Cleavage stimulation fa 99.5 2E-11 6.9E-16 99.1 22.7 233 17-258 231-489 (530)
75 1qqe_A Vesicular transport pro 99.5 1.2E-11 4E-16 92.8 18.3 212 31-258 32-266 (292)
76 2ooe_A Cleavage stimulation fa 99.5 1.1E-10 3.6E-15 94.8 25.1 202 15-226 271-492 (530)
77 1qqe_A Vesicular transport pro 99.4 3.7E-11 1.3E-15 90.0 19.9 207 17-226 38-269 (292)
78 4g1t_A Interferon-induced prot 99.4 1.6E-10 5.4E-15 92.3 24.5 220 28-257 187-455 (472)
79 1hz4_A MALT regulatory protein 99.4 6.6E-11 2.2E-15 91.7 21.6 238 18-257 55-318 (373)
80 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.7E-15 89.9 22.7 239 19-257 17-278 (373)
81 3mv2_B Coatomer subunit epsilo 99.4 6.3E-11 2.1E-15 88.0 19.4 177 70-258 85-279 (310)
82 1xi4_A Clathrin heavy chain; a 99.4 7.5E-11 2.6E-15 102.2 21.4 200 15-255 1104-1303(1630)
83 3ulq_A Response regulator aspa 99.4 4.3E-11 1.5E-15 93.1 18.4 204 15-225 142-367 (383)
84 3qky_A Outer membrane assembly 99.4 1.2E-10 4E-15 85.7 19.7 170 14-191 13-224 (261)
85 4g1t_A Interferon-induced prot 99.4 8.5E-10 2.9E-14 88.0 25.7 221 14-244 49-293 (472)
86 2fo7_A Synthetic consensus TPR 99.4 1.1E-10 3.7E-15 76.4 16.9 130 18-156 3-132 (136)
87 3urz_A Uncharacterized protein 99.4 1.3E-10 4.5E-15 82.5 17.6 189 17-238 5-196 (208)
88 2fo7_A Synthetic consensus TPR 99.4 1.7E-10 5.9E-15 75.4 17.0 130 88-226 3-132 (136)
89 3urz_A Uncharacterized protein 99.4 2.6E-10 8.9E-15 81.0 18.6 174 53-257 6-182 (208)
90 3q15_A PSP28, response regulat 99.3 4.3E-10 1.5E-14 87.3 20.3 203 15-225 140-364 (378)
91 3rjv_A Putative SEL1 repeat pr 99.3 4.9E-10 1.7E-14 79.8 19.1 177 34-228 4-199 (212)
92 3rjv_A Putative SEL1 repeat pr 99.3 4E-10 1.4E-14 80.3 18.1 178 2-193 3-199 (212)
93 2pzi_A Probable serine/threoni 99.3 7.3E-11 2.5E-15 98.5 16.1 173 27-212 402-583 (681)
94 2pzi_A Probable serine/threoni 99.3 8.4E-11 2.9E-15 98.1 16.4 174 62-247 402-583 (681)
95 3mv2_B Coatomer subunit epsilo 99.3 1.8E-09 6.1E-14 80.2 21.3 185 35-227 85-283 (310)
96 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.5E-09 5.1E-14 78.0 20.6 186 15-227 3-214 (225)
97 1xi4_A Clathrin heavy chain; a 99.3 1E-09 3.5E-14 95.4 22.4 206 14-255 1132-1339(1630)
98 3e4b_A ALGK; tetratricopeptide 99.3 1.5E-10 5.1E-15 92.1 16.4 233 2-256 55-346 (452)
99 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.8E-09 9.7E-14 76.6 20.6 166 4-192 23-214 (225)
100 3qou_A Protein YBBN; thioredox 99.3 3.6E-10 1.2E-14 84.4 16.1 165 83-257 114-280 (287)
101 4ga2_A E3 SUMO-protein ligase 99.2 1.1E-10 3.9E-15 78.4 11.0 109 63-180 9-117 (150)
102 3e4b_A ALGK; tetratricopeptide 99.2 9.9E-10 3.4E-14 87.4 18.1 194 13-228 173-389 (452)
103 2r5s_A Uncharacterized protein 99.2 2.6E-10 9.1E-15 78.7 13.1 162 18-189 8-171 (176)
104 4ga2_A E3 SUMO-protein ligase 99.2 1.8E-10 6E-15 77.4 11.6 143 24-176 5-148 (150)
105 2ifu_A Gamma-SNAP; membrane fu 99.2 9.5E-10 3.2E-14 82.9 16.9 170 53-224 38-222 (307)
106 2r5s_A Uncharacterized protein 99.2 2E-10 6.8E-15 79.3 12.1 159 89-257 9-169 (176)
107 3qou_A Protein YBBN; thioredox 99.2 1.1E-09 3.8E-14 81.8 17.0 168 48-224 114-282 (287)
108 3dra_A Protein farnesyltransfe 99.2 1.3E-08 4.4E-13 76.2 22.5 221 27-258 43-284 (306)
109 2vsy_A XCC0866; transferase, g 99.2 1.2E-09 4.2E-14 89.4 18.3 154 29-192 2-158 (568)
110 2vsy_A XCC0866; transferase, g 99.2 9.2E-10 3.1E-14 90.1 17.3 148 2-158 6-159 (568)
111 3u3w_A Transcriptional activat 99.2 5.6E-09 1.9E-13 78.1 17.8 169 21-190 80-265 (293)
112 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.5E-08 5.1E-13 71.9 19.1 137 16-157 6-151 (213)
113 3u3w_A Transcriptional activat 99.1 2.2E-08 7.4E-13 74.9 20.6 163 90-257 79-262 (293)
114 4e6h_A MRNA 3'-END-processing 99.1 3E-08 1E-12 82.2 22.8 239 17-258 303-567 (679)
115 2ifu_A Gamma-SNAP; membrane fu 99.1 6.4E-09 2.2E-13 78.4 15.9 197 17-219 37-254 (307)
116 2qfc_A PLCR protein; TPR, HTH, 99.1 2.3E-08 7.9E-13 74.8 18.8 172 17-189 76-264 (293)
117 4e6h_A MRNA 3'-END-processing 99.1 4.3E-08 1.5E-12 81.3 21.5 215 15-240 342-582 (679)
118 2qfc_A PLCR protein; TPR, HTH, 99.1 7.9E-08 2.7E-12 71.9 21.3 171 86-257 75-262 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.8E-08 9.5E-13 70.5 17.9 128 53-191 8-150 (213)
120 3gw4_A Uncharacterized protein 99.0 1.4E-08 4.9E-13 71.3 14.4 161 63-225 4-175 (203)
121 1a17_A Serine/threonine protei 99.0 3.6E-08 1.2E-12 66.8 15.9 131 16-155 13-145 (166)
122 3dra_A Protein farnesyltransfe 99.0 8.5E-07 2.9E-11 66.4 24.1 214 15-238 66-299 (306)
123 2c2l_A CHIP, carboxy terminus 99.0 4.2E-09 1.4E-13 78.3 11.6 195 15-226 3-199 (281)
124 1na0_A Designed protein CTPR3; 99.0 5E-08 1.7E-12 62.5 15.5 118 126-246 8-125 (125)
125 1na0_A Designed protein CTPR3; 99.0 3.9E-08 1.3E-12 63.0 14.9 116 16-140 9-124 (125)
126 1a17_A Serine/threonine protei 99.0 4.7E-08 1.6E-12 66.2 15.9 127 53-188 15-143 (166)
127 2lni_A Stress-induced-phosphop 99.0 4.6E-08 1.6E-12 63.6 15.2 120 13-141 13-132 (133)
128 2lni_A Stress-induced-phosphop 99.0 6.2E-08 2.1E-12 63.0 15.8 121 124-247 13-133 (133)
129 3gw4_A Uncharacterized protein 99.0 2.2E-08 7.4E-13 70.4 14.4 164 26-191 2-176 (203)
130 2vyi_A SGTA protein; chaperone 99.0 6.1E-08 2.1E-12 62.6 15.6 121 126-249 11-131 (131)
131 4gco_A Protein STI-1; structur 99.0 4.3E-08 1.5E-12 63.5 14.3 98 16-115 13-110 (126)
132 3q7a_A Farnesyltransferase alp 99.0 2.7E-07 9.4E-12 69.9 20.4 229 19-258 57-328 (349)
133 4gco_A Protein STI-1; structur 99.0 4.4E-08 1.5E-12 63.5 14.2 111 126-239 12-122 (126)
134 2c2l_A CHIP, carboxy terminus 99.0 8.4E-09 2.9E-13 76.7 12.2 192 50-257 3-195 (281)
135 2vyi_A SGTA protein; chaperone 99.0 3.7E-08 1.3E-12 63.7 13.7 121 14-143 10-130 (131)
136 1p5q_A FKBP52, FK506-binding p 99.0 2.3E-08 7.9E-13 76.3 14.4 144 3-154 131-292 (336)
137 2e2e_A Formate-dependent nitri 99.0 2.8E-08 9.6E-13 68.4 13.1 121 27-156 21-144 (177)
138 3gyz_A Chaperone protein IPGC; 98.9 4.9E-08 1.7E-12 65.3 13.8 100 126-227 35-134 (151)
139 2e2e_A Formate-dependent nitri 98.9 1.5E-08 5.2E-13 69.7 11.5 121 62-191 21-144 (177)
140 3gyz_A Chaperone protein IPGC; 98.9 4E-08 1.4E-12 65.8 12.5 100 15-116 35-134 (151)
141 1p5q_A FKBP52, FK506-binding p 98.9 8.6E-08 2.9E-12 73.2 15.6 124 50-181 146-283 (336)
142 4f3v_A ESX-1 secretion system 98.9 1.7E-07 5.8E-12 68.8 16.3 197 28-238 18-247 (282)
143 2vgx_A Chaperone SYCD; alterna 98.9 4E-08 1.4E-12 65.6 11.1 98 51-156 21-118 (148)
144 2fbn_A 70 kDa peptidylprolyl i 98.8 1.3E-07 4.4E-12 66.4 13.4 123 16-147 38-176 (198)
145 2vgx_A Chaperone SYCD; alterna 98.8 7.5E-08 2.6E-12 64.3 11.5 99 126-226 20-118 (148)
146 4gcn_A Protein STI-1; structur 98.8 2E-07 7E-12 60.4 13.2 112 51-165 8-119 (127)
147 2fbn_A 70 kDa peptidylprolyl i 98.8 1.4E-08 4.8E-13 71.3 8.1 149 24-181 12-175 (198)
148 4b4t_Q 26S proteasome regulato 98.8 1.3E-06 4.4E-11 68.8 20.1 197 23-224 11-243 (434)
149 3upv_A Heat shock protein STI1 98.8 5.3E-07 1.8E-11 58.1 15.0 99 126-226 3-101 (126)
150 1elr_A TPR2A-domain of HOP; HO 98.8 2.4E-07 8.2E-12 59.8 13.4 119 126-247 3-127 (131)
151 4f3v_A ESX-1 secretion system 98.8 1.3E-07 4.5E-12 69.4 13.0 190 63-258 18-234 (282)
152 1elw_A TPR1-domain of HOP; HOP 98.8 5.9E-07 2E-11 56.8 14.8 100 15-116 3-102 (118)
153 1elw_A TPR1-domain of HOP; HOP 98.8 8.1E-07 2.8E-11 56.1 15.3 111 126-239 3-113 (118)
154 3upv_A Heat shock protein STI1 98.8 4.5E-07 1.6E-11 58.5 13.9 95 53-155 6-100 (126)
155 4gcn_A Protein STI-1; structur 98.8 2.4E-07 8.1E-12 60.1 12.4 110 126-238 7-122 (127)
156 2xcb_A PCRH, regulatory protei 98.8 3.4E-07 1.2E-11 60.5 12.7 99 15-115 17-115 (142)
157 3q49_B STIP1 homology and U bo 98.7 6.8E-07 2.3E-11 58.4 13.8 101 13-115 6-106 (137)
158 3ro3_A PINS homolog, G-protein 98.7 2E-07 6.9E-12 62.5 11.5 139 16-155 9-157 (164)
159 3sz7_A HSC70 cochaperone (SGT) 98.7 8.4E-07 2.9E-11 60.1 14.6 101 125-227 9-109 (164)
160 2xcb_A PCRH, regulatory protei 98.7 3.7E-07 1.3E-11 60.3 12.4 99 126-226 17-115 (142)
161 3sz7_A HSC70 cochaperone (SGT) 98.7 4.7E-07 1.6E-11 61.4 13.2 101 14-116 9-109 (164)
162 2kck_A TPR repeat; tetratricop 98.7 2.9E-07 1E-11 57.7 11.3 101 126-228 5-108 (112)
163 2dba_A Smooth muscle cell asso 98.7 1.3E-06 4.4E-11 57.7 14.9 100 14-116 26-129 (148)
164 3q49_B STIP1 homology and U bo 98.7 5.2E-07 1.8E-11 59.0 12.7 118 126-245 8-129 (137)
165 2kck_A TPR repeat; tetratricop 98.7 4E-07 1.4E-11 57.0 11.6 96 54-155 9-105 (112)
166 4b4t_Q 26S proteasome regulato 98.7 4.9E-07 1.7E-11 71.2 14.3 198 58-256 11-240 (434)
167 1elr_A TPR2A-domain of HOP; HO 98.7 3.3E-07 1.1E-11 59.1 11.0 97 88-191 6-108 (131)
168 3q7a_A Farnesyltransferase alp 98.7 2.2E-05 7.6E-10 59.5 22.0 213 15-237 87-342 (349)
169 2dba_A Smooth muscle cell asso 98.7 2E-06 7E-11 56.7 14.9 98 50-156 27-128 (148)
170 3ro3_A PINS homolog, G-protein 98.7 3.9E-07 1.3E-11 61.1 10.8 138 51-189 9-156 (164)
171 1wao_1 Serine/threonine protei 98.6 8.9E-08 3E-12 76.6 8.0 126 128-256 7-134 (477)
172 1hxi_A PEX5, peroxisome target 98.6 1.1E-06 3.6E-11 56.4 11.1 98 16-115 17-114 (121)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1.1E-06 3.7E-11 70.0 13.5 143 3-154 252-413 (457)
174 3dss_A Geranylgeranyl transfer 98.6 2.9E-05 1E-09 58.6 20.1 200 16-226 26-267 (331)
175 1hxi_A PEX5, peroxisome target 98.6 1.1E-06 3.6E-11 56.4 10.7 94 89-190 20-113 (121)
176 1wao_1 Serine/threonine protei 98.6 1.3E-07 4.6E-12 75.6 7.8 87 26-114 16-102 (477)
177 2xev_A YBGF; tetratricopeptide 98.6 4.1E-06 1.4E-10 54.0 13.5 97 129-227 4-106 (129)
178 2xev_A YBGF; tetratricopeptide 98.6 7.1E-06 2.4E-10 52.8 14.3 95 92-191 8-105 (129)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2.6E-06 8.9E-11 67.8 14.2 124 51-182 268-405 (457)
180 3rkv_A Putative peptidylprolyl 98.5 3E-06 1E-10 57.2 12.6 120 126-248 10-148 (162)
181 2l6j_A TPR repeat-containing p 98.5 2.2E-06 7.5E-11 53.6 11.1 96 161-258 3-104 (111)
182 3k9i_A BH0479 protein; putativ 98.5 4.5E-07 1.5E-11 57.8 7.3 87 28-115 2-90 (117)
183 1ihg_A Cyclophilin 40; ppiase 98.5 4.1E-06 1.4E-10 64.7 13.0 125 16-148 223-362 (370)
184 3k9i_A BH0479 protein; putativ 98.5 9.8E-07 3.4E-11 56.1 8.1 86 64-156 3-90 (117)
185 3rkv_A Putative peptidylprolyl 98.5 8E-06 2.8E-10 55.1 13.1 107 88-197 13-130 (162)
186 1ihg_A Cyclophilin 40; ppiase 98.4 5.3E-06 1.8E-10 64.1 13.3 87 128-216 274-360 (370)
187 1dce_A Protein (RAB geranylger 98.4 4.4E-05 1.5E-09 62.4 18.7 174 66-250 44-244 (567)
188 3n71_A Histone lysine methyltr 98.4 6.4E-06 2.2E-10 65.8 13.2 143 11-155 294-463 (490)
189 3n71_A Histone lysine methyltr 98.4 4.1E-06 1.4E-10 66.9 12.0 130 60-191 318-464 (490)
190 2uy1_A Cleavage stimulation fa 98.4 0.00016 5.3E-09 58.1 21.1 207 33-257 196-409 (493)
191 2if4_A ATFKBP42; FKBP-like, al 98.4 2.1E-06 7E-11 65.6 9.8 149 16-191 179-328 (338)
192 2if4_A ATFKBP42; FKBP-like, al 98.4 2E-06 6.7E-11 65.7 9.6 147 52-226 180-328 (338)
193 2hr2_A Hypothetical protein; a 98.3 3E-05 1E-09 51.7 12.6 97 55-156 15-131 (159)
194 2hr2_A Hypothetical protein; a 98.3 2.5E-05 8.7E-10 52.0 12.1 98 16-115 11-131 (159)
195 1klx_A Cysteine rich protein B 98.3 3.9E-05 1.3E-09 50.3 13.0 112 30-158 9-128 (138)
196 3dss_A Geranylgeranyl transfer 98.3 0.00057 1.9E-08 51.6 23.1 197 32-242 90-319 (331)
197 1dce_A Protein (RAB geranylger 98.3 0.00021 7.3E-09 58.3 19.2 187 17-214 26-243 (567)
198 1klx_A Cysteine rich protein B 98.3 5.8E-05 2E-09 49.5 13.1 113 100-229 9-129 (138)
199 2uy1_A Cleavage stimulation fa 98.2 0.0007 2.4E-08 54.4 20.0 188 15-225 212-412 (493)
200 1na3_A Designed protein CTPR2; 98.1 6.7E-05 2.3E-09 44.7 10.2 83 15-99 8-90 (91)
201 2l6j_A TPR repeat-containing p 98.1 4.3E-05 1.5E-09 47.5 9.4 65 50-115 3-67 (111)
202 2kat_A Uncharacterized protein 98.1 3.4E-05 1.2E-09 48.6 8.7 80 34-115 3-82 (115)
203 1na3_A Designed protein CTPR2; 98.0 0.00015 5.1E-09 43.2 11.0 64 127-191 9-72 (91)
204 2kat_A Uncharacterized protein 98.0 6.9E-05 2.4E-09 47.1 9.7 80 145-226 3-82 (115)
205 3ma5_A Tetratricopeptide repea 97.9 0.0001 3.5E-09 45.2 8.0 64 126-190 6-69 (100)
206 3ma5_A Tetratricopeptide repea 97.9 0.00011 3.8E-09 45.0 7.9 63 15-78 6-68 (100)
207 1zu2_A Mitochondrial import re 97.8 9.6E-05 3.3E-09 49.2 7.8 103 138-244 13-136 (158)
208 3ly7_A Transcriptional activat 97.8 0.0011 3.9E-08 50.4 14.2 143 47-200 190-346 (372)
209 1zu2_A Mitochondrial import re 97.8 8.8E-05 3E-09 49.3 7.2 100 97-206 13-133 (158)
210 3mkq_A Coatomer beta'-subunit; 97.7 0.00052 1.8E-08 58.5 12.5 188 23-255 606-808 (814)
211 3qwp_A SET and MYND domain-con 97.6 0.001 3.4E-08 52.4 12.1 94 132-225 292-399 (429)
212 3qww_A SET and MYND domain-con 97.6 0.00026 9E-09 55.7 8.6 87 28-114 310-410 (433)
213 3qww_A SET and MYND domain-con 97.6 0.00051 1.8E-08 54.0 10.1 90 99-190 311-410 (433)
214 3qwp_A SET and MYND domain-con 97.6 0.0007 2.4E-08 53.3 10.8 93 21-113 292-398 (429)
215 3ly7_A Transcriptional activat 97.6 0.0052 1.8E-07 46.9 15.0 144 82-236 190-347 (372)
216 3mkq_A Coatomer beta'-subunit; 97.4 0.011 3.6E-07 50.5 16.5 133 18-189 631-763 (814)
217 2kc7_A BFR218_protein; tetratr 97.3 0.0011 3.6E-08 40.2 7.2 58 133-191 6-64 (99)
218 4h7y_A Dual specificity protei 97.2 0.019 6.5E-07 37.5 11.9 114 126-242 12-138 (161)
219 2kc7_A BFR218_protein; tetratr 97.1 0.011 3.8E-07 35.5 10.3 59 92-157 6-65 (99)
220 3mkq_B Coatomer subunit alpha; 97.1 0.027 9.4E-07 38.0 13.2 103 23-152 12-114 (177)
221 2v5f_A Prolyl 4-hydroxylase su 97.1 0.012 4E-07 36.1 10.2 67 14-80 3-75 (104)
222 3mkq_B Coatomer subunit alpha; 97.1 0.031 1.1E-06 37.8 13.6 131 58-224 12-142 (177)
223 2v5f_A Prolyl 4-hydroxylase su 97.1 0.01 3.5E-07 36.4 9.5 73 84-156 3-75 (104)
224 3bee_A Putative YFRE protein; 97.0 0.019 6.5E-07 34.4 10.3 65 85-156 5-72 (93)
225 1pc2_A Mitochondria fission pr 97.0 0.026 8.9E-07 37.1 11.3 87 143-233 14-105 (152)
226 3bee_A Putative YFRE protein; 96.8 0.03 1E-06 33.5 11.0 65 15-80 5-72 (93)
227 4h7y_A Dual specificity protei 96.8 0.051 1.7E-06 35.5 11.3 104 14-119 11-127 (161)
228 1pc2_A Mitochondria fission pr 96.5 0.031 1.1E-06 36.8 8.9 82 32-115 14-100 (152)
229 3u64_A Protein TP_0956; tetrat 96.2 0.13 4.3E-06 37.9 11.6 92 67-166 179-281 (301)
230 3u64_A Protein TP_0956; tetrat 96.1 0.075 2.6E-06 39.1 9.9 95 102-201 179-281 (301)
231 3lvg_A Clathrin heavy chain 1; 96.0 1.2E-05 4E-10 62.9 -10.8 202 17-245 55-276 (624)
232 4gns_B Protein CSD3, chitin bi 96.0 0.045 1.6E-06 46.1 9.3 128 129-257 250-396 (754)
233 2ff4_A Probable regulatory pro 95.9 0.42 1.4E-05 37.1 14.0 186 15-201 32-249 (388)
234 4fhn_B Nucleoporin NUP120; pro 95.8 0.95 3.2E-05 40.6 17.4 191 56-254 817-1042(1139)
235 4gns_B Protein CSD3, chitin bi 95.7 0.45 1.5E-05 40.2 14.0 134 54-189 251-398 (754)
236 2ff4_A Probable regulatory pro 95.6 0.089 3.1E-06 40.8 9.3 66 54-120 174-244 (388)
237 1v54_E Cytochrome C oxidase po 95.4 0.21 7.1E-06 30.1 8.5 61 180-241 28-88 (109)
238 4fhn_B Nucleoporin NUP120; pro 95.4 1.2 4.2E-05 39.9 16.7 215 21-245 817-1079(1139)
239 1nzn_A CGI-135 protein, fissio 95.1 0.26 8.9E-06 31.2 8.5 88 27-115 12-103 (126)
240 1nzn_A CGI-135 protein, fissio 95.1 0.35 1.2E-05 30.6 10.2 85 140-226 14-103 (126)
241 2y69_E Cytochrome C oxidase su 94.7 0.46 1.6E-05 30.3 8.5 62 180-242 71-132 (152)
242 1wy6_A Hypothetical protein ST 94.5 0.56 1.9E-05 30.2 15.3 68 161-229 90-157 (172)
243 4b4t_R RPN7, 26S proteasome re 94.5 0.73 2.5E-05 36.3 11.5 101 87-191 132-237 (429)
244 1wy6_A Hypothetical protein ST 94.3 0.61 2.1E-05 30.0 14.8 140 27-194 18-157 (172)
245 4b4t_R RPN7, 26S proteasome re 93.7 0.87 3E-05 35.8 10.6 97 18-114 133-236 (429)
246 3lvg_A Clathrin heavy chain 1; 93.6 0.0011 3.7E-08 52.3 -5.8 181 14-209 81-275 (624)
247 2y69_E Cytochrome C oxidase su 93.5 0.88 3E-05 29.1 8.5 63 142-205 68-130 (152)
248 1v54_E Cytochrome C oxidase po 93.3 0.77 2.6E-05 27.7 9.6 49 66-114 25-73 (109)
249 3txn_A 26S proteasome regulato 92.6 2.9 0.0001 32.4 18.6 171 17-189 20-208 (394)
250 4b4t_P 26S proteasome regulato 92.1 3.6 0.00012 32.5 19.8 231 14-245 54-306 (445)
251 3ffl_A Anaphase-promoting comp 91.5 2.1 7.2E-05 28.5 9.7 100 126-225 19-150 (167)
252 3ffl_A Anaphase-promoting comp 90.7 2.4 8.1E-05 28.3 8.1 106 10-115 12-151 (167)
253 2uwj_G Type III export protein 90.3 1.9 6.5E-05 25.9 7.6 87 141-236 20-106 (115)
254 2p58_C Putative type III secre 90.0 2 7E-05 25.8 8.6 87 141-236 21-107 (116)
255 1k1a_A B-cell lymphoma 3-encod 89.8 2.1 7.2E-05 30.0 8.2 182 22-220 12-203 (241)
256 4b4t_P 26S proteasome regulato 89.6 6.5 0.00022 31.1 20.2 194 30-225 30-246 (445)
257 3esl_A Checkpoint serine/threo 88.3 4.8 0.00016 27.8 9.9 55 101-160 94-148 (202)
258 1zbp_A Hypothetical protein VP 88.1 2.4 8E-05 30.8 7.1 55 136-191 6-60 (273)
259 1qsa_A Protein (soluble lytic 87.7 11 0.00038 31.3 18.7 112 142-257 229-344 (618)
260 1wdy_A 2-5A-dependent ribonucl 87.3 5 0.00017 28.8 8.9 19 21-39 7-25 (285)
261 3o48_A Mitochondria fission 1 87.0 4.3 0.00015 25.9 8.7 68 48-115 37-107 (134)
262 3eiq_C Programmed cell death p 85.7 10 0.00035 29.0 15.4 59 18-78 56-116 (358)
263 3hra_A Ankyrin repeat family p 84.8 3.5 0.00012 27.9 6.7 82 23-109 9-92 (201)
264 2wpv_A GET4, UPF0363 protein Y 84.6 11 0.00036 28.2 15.1 124 23-150 20-157 (312)
265 2zu6_B Programmed cell death p 82.8 13 0.00044 27.7 14.9 58 19-78 6-65 (307)
266 4a1g_A Mitotic checkpoint seri 81.0 9.4 0.00032 25.0 9.1 50 146-195 84-134 (152)
267 2uwj_G Type III export protein 80.4 7.3 0.00025 23.4 6.9 80 30-117 20-99 (115)
268 2fe3_A Peroxide operon regulat 80.4 9.4 0.00032 24.7 7.2 61 187-248 12-72 (145)
269 2p58_C Putative type III secre 79.8 7.8 0.00027 23.4 7.5 79 30-116 21-99 (116)
270 3aji_A 26S proteasome non-ATPa 79.5 13 0.00044 25.7 8.6 176 22-220 9-192 (231)
271 3jxi_A Vanilloid receptor-rela 79.4 3.4 0.00011 29.5 5.1 193 22-225 8-250 (260)
272 2fu4_A Ferric uptake regulatio 79.2 6.7 0.00023 22.3 6.1 62 187-249 7-69 (83)
273 1ug3_A EIF4GI, eukaryotic prot 78.8 19 0.00065 27.2 11.5 93 19-113 14-112 (339)
274 1mzb_A Ferric uptake regulatio 78.7 8.4 0.00029 24.6 6.3 60 188-248 9-69 (136)
275 2d2s_A Exocyst complex compone 77.7 16 0.00056 25.9 9.2 90 21-113 23-118 (235)
276 3lpz_A GET4 (YOR164C homolog); 77.1 21 0.00073 26.9 18.6 87 60-150 64-159 (336)
277 3eyy_A Putative iron uptake re 76.8 8.3 0.00028 25.0 5.9 60 187-248 9-68 (145)
278 2fe3_A Peroxide operon regulat 76.6 13 0.00043 24.1 7.3 60 111-177 12-71 (145)
279 2xig_A Ferric uptake regulatio 76.0 14 0.00046 24.1 7.0 62 110-178 16-77 (150)
280 3esl_A Checkpoint serine/threo 76.0 17 0.00057 25.2 10.8 56 140-195 92-148 (202)
281 2w57_A Ferric uptake regulatio 75.7 9.2 0.00031 24.9 5.9 60 188-248 8-68 (150)
282 3eyy_A Putative iron uptake re 75.4 12 0.0004 24.2 6.3 60 110-177 8-67 (145)
283 2wvi_A Mitotic checkpoint seri 75.3 15 0.00053 24.4 9.5 51 105-160 79-129 (164)
284 3o48_A Mitochondria fission 1 75.1 14 0.00046 23.7 11.8 69 158-226 36-107 (134)
285 1mzb_A Ferric uptake regulatio 75.0 14 0.00046 23.6 6.7 60 112-178 9-69 (136)
286 4ady_A RPN2, 26S proteasome re 74.5 45 0.0015 29.4 17.6 115 136-255 499-617 (963)
287 4aez_C MAD3, mitotic spindle c 74.4 16 0.00054 25.7 6.9 53 144-196 131-184 (223)
288 2w57_A Ferric uptake regulatio 73.4 15 0.00052 23.9 6.5 61 111-178 7-68 (150)
289 3t8k_A Uncharacterized protein 73.2 18 0.00063 24.3 8.2 133 92-228 41-182 (186)
290 1bd8_A P19INK4D CDK4/6 inhibit 72.2 9.1 0.00031 24.5 5.3 20 22-41 5-24 (156)
291 1k1a_A B-cell lymphoma 3-encod 72.1 22 0.00074 24.7 8.3 151 58-221 13-171 (241)
292 4aez_C MAD3, mitotic spindle c 71.8 11 0.00037 26.5 5.7 59 179-237 131-190 (223)
293 3eu9_A Huntingtin-interacting 71.8 22 0.00074 24.5 7.8 176 23-222 13-199 (240)
294 3kea_A K1L; tropism, ANK repea 71.1 27 0.00092 25.3 8.9 79 23-109 35-115 (285)
295 3eu9_A Huntingtin-interacting 71.1 21 0.00073 24.6 7.5 181 22-225 45-235 (240)
296 2ion_A PDCD4, programmed cell 70.7 19 0.00066 23.5 7.6 67 128-195 10-78 (152)
297 4ady_A RPN2, 26S proteasome re 70.3 57 0.002 28.8 19.3 180 63-254 536-728 (963)
298 4ets_A Ferric uptake regulatio 69.4 22 0.00074 23.5 6.8 62 111-179 23-86 (162)
299 2ion_A PDCD4, programmed cell 68.4 22 0.00075 23.3 8.5 72 164-236 11-84 (152)
300 2nsz_A Programmed cell death p 67.6 20 0.0007 22.6 9.2 71 128-199 8-80 (129)
301 2nsz_A Programmed cell death p 67.4 21 0.00071 22.6 8.9 78 164-242 9-88 (129)
302 3hra_A Ankyrin repeat family p 67.3 19 0.00064 24.2 6.3 158 60-231 11-172 (201)
303 1zbp_A Hypothetical protein VP 67.3 34 0.0011 25.0 14.7 121 24-156 5-129 (273)
304 2wvi_A Mitotic checkpoint seri 65.9 26 0.0009 23.3 9.0 55 144-198 77-132 (164)
305 2d2s_A Exocyst complex compone 64.8 35 0.0012 24.2 9.7 92 130-224 21-118 (235)
306 1y8m_A FIS1; mitochondria, unk 63.8 27 0.00092 22.6 13.3 68 159-226 36-106 (144)
307 3mwm_A ZUR, putative metal upt 62.5 8.8 0.0003 24.6 3.6 47 202-248 18-64 (139)
308 2o03_A Probable zinc uptake re 62.1 19 0.00066 22.7 5.1 45 22-66 16-60 (131)
309 2xig_A Ferric uptake regulatio 61.4 30 0.001 22.4 8.0 37 211-247 40-76 (150)
310 2o03_A Probable zinc uptake re 61.1 11 0.00038 23.8 3.9 46 203-248 16-61 (131)
311 2b7e_A PRE-mRNA processing pro 61.1 13 0.00043 19.8 3.3 29 68-96 3-31 (59)
312 3eiq_C Programmed cell death p 61.0 53 0.0018 25.1 11.3 78 165-243 220-299 (358)
313 1bpo_A Protein (clathrin); cla 61.0 58 0.002 26.0 8.2 143 99-255 342-492 (494)
314 3kea_A K1L; tropism, ANK repea 60.9 44 0.0015 24.1 9.0 19 134-152 165-183 (285)
315 1y8m_A FIS1; mitochondria, unk 60.8 31 0.0011 22.3 11.8 68 48-115 36-106 (144)
316 2zu6_B Programmed cell death p 60.7 49 0.0017 24.6 12.5 73 165-238 169-243 (307)
317 3mwm_A ZUR, putative metal upt 60.4 17 0.00058 23.3 4.7 43 23-65 20-62 (139)
318 2fu4_A Ferric uptake regulatio 58.7 22 0.00076 20.0 6.4 33 179-211 34-66 (83)
319 3lpz_A GET4 (YOR164C homolog); 58.6 57 0.0019 24.7 18.3 46 161-210 135-180 (336)
320 3t8k_A Uncharacterized protein 57.7 40 0.0014 22.6 9.7 163 24-194 11-183 (186)
321 3bu8_A Telomeric repeat-bindin 57.6 46 0.0016 23.3 8.6 49 143-191 88-143 (235)
322 1ug3_A EIF4GI, eukaryotic prot 56.5 13 0.00046 28.1 4.2 66 129-195 13-79 (339)
323 2f8y_A Notch homolog 1, transl 55.8 42 0.0014 22.9 6.5 143 21-185 27-178 (223)
324 4ets_A Ferric uptake regulatio 55.7 41 0.0014 22.2 6.7 69 33-102 14-85 (162)
325 2ijq_A Hypothetical protein; s 55.4 42 0.0014 22.2 8.3 50 30-79 46-103 (161)
326 4a1g_A Mitotic checkpoint seri 55.1 41 0.0014 22.0 9.9 52 68-119 82-134 (152)
327 3jxi_A Vanilloid receptor-rela 54.8 43 0.0015 23.6 6.6 55 58-112 9-72 (260)
328 1bd8_A P19INK4D CDK4/6 inhibit 53.8 16 0.00056 23.3 3.9 19 58-76 6-24 (156)
329 3qil_A Clathrin heavy chain 1; 53.7 16 0.00053 22.9 3.3 47 22-71 38-84 (125)
330 3twr_A Tankyrase-2; ankyrin re 53.2 42 0.0014 21.5 6.1 89 22-119 11-101 (165)
331 3f3f_C Nucleoporin NUP85; stru 53.1 82 0.0028 25.8 8.1 70 70-147 500-569 (570)
332 2pnn_A Transient receptor pote 52.5 37 0.0013 24.2 5.9 56 22-77 16-80 (273)
333 3kae_A CDC27, possible protein 51.0 55 0.0019 22.2 8.0 119 26-155 12-142 (242)
334 3bu8_A Telomeric repeat-bindin 51.0 61 0.0021 22.7 10.5 21 205-225 122-142 (235)
335 3txn_A 26S proteasome regulato 50.9 85 0.0029 24.4 19.2 204 15-224 57-282 (394)
336 2wpv_A GET4, UPF0363 protein Y 50.9 75 0.0026 23.7 16.3 141 53-218 35-189 (312)
337 1qsa_A Protein (soluble lytic 50.7 1.1E+02 0.0037 25.5 16.7 119 101-225 229-347 (618)
338 2rg8_A Programmed cell death p 50.6 52 0.0018 21.8 6.0 60 128-189 11-72 (165)
339 2f6m_A Suppressor protein STP2 48.8 31 0.0011 18.8 4.3 46 53-99 4-49 (65)
340 2keb_A DNA polymerase subunit 48.0 42 0.0014 20.0 6.8 32 180-211 27-58 (101)
341 1wdy_A 2-5A-dependent ribonucl 47.7 56 0.0019 23.1 6.3 55 57-119 8-65 (285)
342 3qye_A TBC1 domain family memb 47.5 83 0.0028 23.5 7.3 47 37-83 209-255 (331)
343 2qfz_A TBC1 domain family memb 47.1 80 0.0027 23.8 7.2 75 149-223 231-312 (345)
344 2keb_A DNA polymerase subunit 46.9 44 0.0015 19.9 6.4 58 144-203 26-88 (101)
345 2ijq_A Hypothetical protein; s 46.5 61 0.0021 21.4 8.0 60 165-225 36-103 (161)
346 4b4t_S RPN3, 26S proteasome re 46.3 1.2E+02 0.004 24.7 11.9 65 51-115 231-299 (523)
347 2yru_A Steroid receptor RNA ac 44.9 54 0.0018 20.4 5.0 20 95-114 70-89 (118)
348 3aji_A 26S proteasome non-ATPa 42.9 77 0.0026 21.6 6.5 145 58-221 10-160 (231)
349 3t5v_B Nuclear mRNA export pro 42.8 79 0.0027 25.1 6.6 69 88-156 178-249 (455)
350 4g8k_A 2-5A-dependent ribonucl 42.6 99 0.0034 22.8 7.4 106 107-231 220-328 (337)
351 2rfa_A Transient receptor pote 41.9 81 0.0028 21.5 9.4 191 22-225 6-222 (232)
352 3b7b_A Euchromatic histone-lys 41.2 54 0.0019 22.5 5.2 172 22-220 14-197 (237)
353 4gq2_M Nucleoporin NUP120; bet 40.2 2E+02 0.0067 25.5 12.0 112 22-141 816-950 (950)
354 3qye_A TBC1 domain family memb 39.6 1.2E+02 0.004 22.7 8.6 76 148-223 209-288 (331)
355 3hzj_A Rabgap1L, RAB GTPase-ac 39.6 1.1E+02 0.0039 22.5 7.1 44 39-82 177-220 (310)
356 3ljn_A Hypothetical protein; a 38.7 1.2E+02 0.0041 22.6 7.4 16 207-222 251-266 (364)
357 3v30_A DNA-binding protein rfx 38.2 79 0.0027 20.3 7.0 18 24-41 7-24 (172)
358 2etb_A Transient receptor pote 38.1 1E+02 0.0034 21.5 6.5 23 61-83 9-31 (256)
359 3c1d_A Protein ORAA, regulator 38.1 83 0.0028 20.6 9.7 51 67-119 46-96 (159)
360 1ixm_A SPO0B, protein (sporula 37.8 76 0.0026 21.6 5.2 71 142-223 14-84 (192)
361 3ljn_A Hypothetical protein; a 37.5 1.3E+02 0.0043 22.5 8.2 95 14-117 16-112 (364)
362 2etb_A Transient receptor pote 37.0 1E+02 0.0036 21.4 8.1 58 21-79 4-71 (256)
363 3qil_A Clathrin heavy chain 1; 36.8 26 0.0009 21.9 2.5 55 51-108 32-86 (125)
364 3lxu_X Tripeptidyl-peptidase 2 36.5 2.4E+02 0.0082 26.2 9.1 35 174-210 1296-1330(1354)
365 2p22_A Suppressor protein STP2 36.3 67 0.0023 21.6 4.5 53 49-102 109-161 (174)
366 2qq8_A TBC1 domain family memb 36.1 1.1E+02 0.0037 23.0 6.3 44 38-81 215-258 (334)
367 3t5v_B Nuclear mRNA export pro 36.0 1.2E+02 0.0041 24.1 6.6 63 18-80 178-249 (455)
368 2dzn_A Probable 26S proteasome 35.4 1E+02 0.0035 20.8 6.5 177 22-220 5-194 (228)
369 2r9g_A AAA ATPase, central reg 35.2 1.1E+02 0.0038 21.1 9.7 18 29-46 27-44 (204)
370 2qq8_A TBC1 domain family memb 33.6 61 0.0021 24.4 4.6 44 149-192 215-258 (334)
371 3bqo_A Telomeric repeat-bindin 33.0 1E+02 0.0035 21.3 5.0 23 58-80 124-146 (211)
372 4b4t_S RPN3, 26S proteasome re 32.9 2E+02 0.0068 23.4 12.0 67 86-156 231-299 (523)
373 3f3f_C Nucleoporin NUP85; stru 32.4 2.1E+02 0.0072 23.5 7.8 53 51-105 516-568 (570)
374 1wgl_A TOLL-interacting protei 31.7 48 0.0016 17.6 2.7 23 209-231 35-57 (59)
375 3c1d_A Protein ORAA, regulator 31.7 1.1E+02 0.0037 20.0 11.6 102 142-248 45-146 (159)
376 2ko4_A Mediator of RNA polymer 31.5 74 0.0025 18.1 3.6 32 46-77 31-62 (81)
377 3hzj_A Rabgap1L, RAB GTPase-ac 31.5 1.6E+02 0.0053 21.8 8.6 74 148-221 175-251 (310)
378 3ygs_P Procaspase 9; apoptosis 31.3 83 0.0028 18.5 4.7 66 72-149 25-90 (97)
379 3lxu_X Tripeptidyl-peptidase 2 30.8 3.3E+02 0.011 25.4 9.1 76 33-112 1266-1342(1354)
380 1bpo_A Protein (clathrin); cla 30.8 2.1E+02 0.0071 23.0 10.4 112 30-152 343-454 (494)
381 3d5l_A Regulatory protein RECX 30.7 1.4E+02 0.0047 20.9 11.2 14 199-212 181-194 (221)
382 3pvs_A Replication-associated 30.7 2E+02 0.0068 22.7 13.2 28 49-78 192-219 (447)
383 4g8k_A 2-5A-dependent ribonucl 30.7 1.6E+02 0.0055 21.6 7.2 153 23-197 172-329 (337)
384 2p22_A Suppressor protein STP2 29.6 1E+02 0.0034 20.7 4.5 52 11-63 106-157 (174)
385 4gq2_M Nucleoporin NUP120; bet 29.5 3E+02 0.01 24.4 13.2 130 57-211 816-950 (950)
386 2yru_A Steroid receptor RNA ac 29.2 1.1E+02 0.0036 19.1 5.5 44 37-80 47-90 (118)
387 1wty_A Hypothetical protein TT 29.2 1E+02 0.0035 18.9 6.1 76 142-224 3-79 (119)
388 4fke_A Aminopeptidase N; zinc 29.0 3E+02 0.01 24.2 17.4 158 55-225 690-859 (909)
389 3d5l_A Regulatory protein RECX 28.9 1.5E+02 0.0051 20.7 8.9 16 103-118 93-108 (221)
390 3bqo_A Telomeric repeat-bindin 28.8 99 0.0034 21.4 4.4 25 132-156 122-146 (211)
391 2qfz_A TBC1 domain family memb 28.3 1.9E+02 0.0065 21.7 7.2 46 38-83 231-276 (345)
392 2rfa_A Transient receptor pote 28.1 1.4E+02 0.0049 20.2 9.3 24 205-228 159-182 (232)
393 4fke_A Aminopeptidase N; zinc 27.6 3.2E+02 0.011 24.1 17.4 158 20-190 690-859 (909)
394 3f6q_A Integrin-linked protein 27.5 1.3E+02 0.0044 19.5 6.8 87 24-119 10-98 (179)
395 1oai_A Nuclear RNA export fact 27.3 71 0.0024 16.9 2.9 23 29-51 33-56 (59)
396 2xai_A ASB-9, ankyrin repeat a 26.6 1.7E+02 0.0057 20.5 7.4 18 23-40 7-24 (261)
397 3ctd_A Putative ATPase, AAA fa 26.2 1.7E+02 0.0058 20.4 8.9 36 63-98 47-82 (213)
398 2qx5_A Nucleoporin NIC96; mRNA 25.8 3E+02 0.01 23.2 12.7 227 4-259 292-565 (661)
399 2rg8_A Programmed cell death p 25.8 1.5E+02 0.005 19.6 7.2 21 168-188 16-36 (165)
400 3m0z_A Putative aldolase; MCSG 25.6 64 0.0022 22.8 3.1 66 14-79 171-246 (249)
401 3m6y_A 4-hydroxy-2-oxoglutarat 25.4 66 0.0022 23.1 3.1 66 14-79 194-269 (275)
402 4hbd_A KN motif and ankyrin re 24.8 1.7E+02 0.0059 20.8 5.7 146 60-222 117-272 (276)
403 3bge_A Predicted ATPase; struc 24.5 1.8E+02 0.0061 20.1 9.1 30 22-51 10-42 (201)
404 3ph0_C ASCG; type III secretio 24.1 88 0.003 16.4 3.7 40 142-182 21-60 (61)
405 4b4t_O 26S proteasome regulato 23.6 2.5E+02 0.0087 21.6 9.6 88 133-220 82-192 (393)
406 4hbd_A KN motif and ankyrin re 23.3 32 0.0011 24.8 1.5 117 92-221 114-237 (276)
407 3v31_A Ankyrin repeat family A 23.1 1.5E+02 0.0051 18.8 8.4 18 24-41 8-25 (167)
408 1ixm_A SPO0B, protein (sporula 23.0 1.8E+02 0.0062 19.7 5.6 23 91-113 37-59 (192)
409 3utm_A Tankyrase-1; tankyrase, 22.9 2.2E+02 0.0075 20.8 6.1 114 21-150 26-144 (351)
410 2dod_A Transcription elongatio 22.4 1.2E+02 0.0041 17.4 3.6 31 67-98 16-47 (82)
411 1rw2_A ATP-dependent DNA helic 22.1 69 0.0024 20.9 2.7 52 65-119 72-127 (152)
412 3e3v_A Regulatory protein RECX 22.0 1.8E+02 0.0063 19.4 9.1 50 144-194 50-99 (177)
413 3ltm_A Alpha-REP4; protein eng 21.9 1.9E+02 0.0063 19.4 18.1 172 49-246 31-202 (211)
414 3mv2_A Coatomer subunit alpha; 21.7 2.6E+02 0.0089 21.0 12.7 130 26-176 124-256 (325)
415 1wxp_A THO complex subunit 1; 21.6 71 0.0024 19.4 2.5 41 179-221 58-98 (110)
416 1n11_A Ankyrin; clathrin, BAND 21.3 2.8E+02 0.0096 21.2 6.9 18 22-39 17-34 (437)
417 1uzc_A Hypothetical protein FL 21.2 1.2E+02 0.004 16.8 3.5 32 67-98 14-45 (71)
418 2p1h_A APAF-1, apoptotic prote 21.0 1.3E+02 0.0045 17.3 6.7 33 100-142 50-82 (94)
419 3kae_A CDC27, possible protein 20.8 2.1E+02 0.0071 19.5 10.6 89 18-112 34-140 (242)
420 2y1l_E Darpin-8.4; hydrolase-i 20.6 1.7E+02 0.006 18.6 7.1 18 22-39 17-34 (169)
421 2i2x_B MTAC, methyltransferase 20.6 1.8E+02 0.006 20.9 4.9 14 148-161 14-27 (258)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.3e-38 Score=254.36 Aligned_cols=212 Identities=16% Similarity=0.182 Sum_probs=182.5
Q ss_pred HHHHHHHHHHhhCCCCCch-HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC---------H
Q 036731 33 DKAKELFLQMKDENINPNV-VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK---------M 102 (259)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 102 (259)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456666777777665543 46888899999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 036731 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182 (259)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (259)
+.|.++|++|...|+.|+ ..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.
T Consensus 87 ~~A~~lf~~M~~~G~~Pd------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPN------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHTTCCCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 889999999999999885 59999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCC
Q 036731 183 DLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250 (259)
Q Consensus 183 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 250 (259)
++|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..|...+....
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~ 228 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKT 228 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999987655443
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-37 Score=248.95 Aligned_cols=195 Identities=15% Similarity=0.190 Sum_probs=181.3
Q ss_pred ccccCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCC---------hhHHHHHHHHHHH
Q 036731 10 VVCKPNT-VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND---------GNEAEYLFIEMMD 79 (259)
Q Consensus 10 ~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~ 79 (259)
++..+.+ ..++.+|.+|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+. ++.|.++|++|..
T Consensus 19 k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~ 98 (501)
T 4g26_A 19 KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV 98 (501)
T ss_dssp -----CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH
Confidence 3444443 46889999999999999999999999999999999999999999988765 6789999999999
Q ss_pred cCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 036731 80 RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159 (259)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (259)
.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.|+ ..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 99 ~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~ 172 (501)
T 4g26_A 99 DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV 172 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999885 599999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 036731 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210 (259)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 210 (259)
||..||+.+|.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 173 Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 173 PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999988753
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.7e-26 Score=189.89 Aligned_cols=245 Identities=11% Similarity=0.009 Sum_probs=214.9
Q ss_pred CCccccccccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 3 NGNREFGVVCK--PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 3 ~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
+|.++|+...+ +++.+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 45666666655 899999999999999999999999999998765 447889999999999999999999999999866
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036731 81 GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160 (259)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (259)
. +.+..+++.++.+|.+.|++++|.++|+++.+. .|+ +..+|+.++.+|.+.|++++|..+|+++.+.+ +.
T Consensus 369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 439 (597)
T 2xpi_A 369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQ-----FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QG 439 (597)
T ss_dssp C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TT
T ss_pred C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 3 447889999999999999999999999999874 333 46899999999999999999999999998875 34
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCccc--hHH
Q 036731 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPY--ASI 234 (259)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~ 234 (259)
+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 78899999999999999999999999998763 447889999999999999999999999998765 55676 789
Q ss_pred HHHHHHHHHHhcccCCcchhhhcc
Q 036731 235 LSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 235 ~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
+..++.+|.+.|++++|++.|+++
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999998763
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.1e-24 Score=179.03 Aligned_cols=245 Identities=13% Similarity=0.026 Sum_probs=215.4
Q ss_pred CCcccccccc---cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 036731 3 NGNREFGVVC---KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 3 ~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 79 (259)
+|.++|+... +.+..+|+.++.++.+.|++++|.++++++.+.. +.+..+++.++..|.+.|++++|.++|+++.+
T Consensus 323 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555443 3477889999999999999999999999998653 55788999999999999999999999999988
Q ss_pred cCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 036731 80 RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159 (259)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (259)
.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. + +..+|+.++.+|.+.|++++|..+|+++.+...
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 472 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ--G-----THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ- 472 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT--T-----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--c-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 63 33678999999999999999999999999987643 2 458999999999999999999999999998753
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchH
Q 036731 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK----GVAPN--CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233 (259)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 233 (259)
.+..+|..++..+.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 551 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDAN 551 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChH
Confidence 37889999999999999999999999999876 66787 7899999999999999999999999998775 44789
Q ss_pred HHHHHHHHHHHhcccCCcchhhhcc
Q 036731 234 ILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 234 ~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
++..+..+|.+.|++++|.+.|+++
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999998763
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.89 E-value=3.5e-20 Score=144.66 Aligned_cols=233 Identities=12% Similarity=0.044 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+... .+...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 356677777777777777777777777776542 22345566677777777777777777766665532 1344455566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------------
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-------------- 159 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------- 159 (259)
..+...|++++|.+.|+++.+. .|+ +..+|..+...+...|++++|...|+++.+.+..
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~--~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIET--QPN-----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH--CTT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6666666666666666666553 222 3355666666666666666666666655543211
Q ss_pred ------------------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 036731 160 ------------------P-NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 160 ------------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
| +..++..+..++...|++++|...++++.+.+ +.+..++..+...+.+.|++++|.+.+
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 23444555555555555555555555555442 223445555555555566666666666
Q ss_pred HHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 221 RSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+++.+.. +.+..++..+...+.+.|++++|++.|++
T Consensus 295 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 295 NTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555442 33445555555666666666666555543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.89 E-value=5e-20 Score=143.78 Aligned_cols=237 Identities=11% Similarity=0.050 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+..
T Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 177 (388)
T 1w3b_A 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGC 177 (388)
T ss_dssp CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666777777777777777776666542 2234445555566666666666666666666542 223455556666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCc-----------------------------cchhHHHHHHHHHHHHhcCChHH
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAF-----------------------------CEINIVAYGCLIDGLCKIGKLKN 145 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~ 145 (259)
++...|++++|...|+++.+.+ |+.. .+.+..++..+..++...|++++
T Consensus 178 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 178 VFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665554421 1110 11146788899999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
|...|+++.+.+. .+..+|..+..++.+.|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 256 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 256 AIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999998743 256789999999999999999999999998873 56788999999999999999999999999987
Q ss_pred CCCccchHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 226 RNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
.. +.+..++..+..++.+.|++++|++.|++.
T Consensus 334 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 334 VF-PEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp SC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 63 446788999999999999999999998753
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=166.06 Aligned_cols=130 Identities=8% Similarity=0.081 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTR---AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTT 202 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 202 (259)
-..+|+++|++|++.|++++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457999999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhh
Q 036731 203 LMPSFIRKNET-SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255 (259)
Q Consensus 203 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 255 (259)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+-.+...++.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 99999999984 789999999999999999999998888877776655554443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.6e-19 Score=143.54 Aligned_cols=233 Identities=12% Similarity=0.066 Sum_probs=196.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
.++..|..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+.+. .+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 367789999999999999999999999998763 45788999999999999999999999999998753 3678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCC
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI---VAYGCL------------IDGLCKIGKLKNARELSQSLTRAGL 158 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (259)
.+|...|++++|...|+++.+.. |+ +. ..+..+ ...+...|++++|...++++.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 173 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PS-----ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC- 173 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CC-----ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 99999999999999999998753 33 34 455555 445899999999999999998864
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHH
Q 036731 159 MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238 (259)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (259)
+.+..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~ 251 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHY 251 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHH
Confidence 3377889999999999999999999999998763 45688999999999999999999999999986532 234444444
Q ss_pred ------------HHHHHHhcccCCcchhhhcc
Q 036731 239 ------------VDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 239 ------------~~~~~~~g~~~~a~~~~~~~ 258 (259)
...+...|++++|++.|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78899999999999988763
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=5.9e-22 Score=164.62 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKD---ENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (259)
..|||++|++|++.|++++|.++|.+|.+ .|..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCH-HHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------hhhH
Q 036731 93 MDELCKNRKM-DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN------VVTY 165 (259)
Q Consensus 93 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 165 (259)
|.++++.|+. ++|.++|++|.+.|+.| |..+|++++..+.+. .+++..+++ ..+..|+ ..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~P------D~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~ 275 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKL------QALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTS 275 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCS------HHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCC------ChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccch
Confidence 9999999984 78999999999999988 569999999776654 344444444 2334433 4455
Q ss_pred HHHHHHHHhcC
Q 036731 166 NITIHALCNDE 176 (259)
Q Consensus 166 ~~li~~~~~~~ 176 (259)
..|...|.+.+
T Consensus 276 ~LL~dl~s~d~ 286 (1134)
T 3spa_A 276 KLLRDVYAKDG 286 (1134)
T ss_dssp TTTHHHHCCCS
T ss_pred HHHHHHHccCC
Confidence 55666666554
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=7.1e-20 Score=141.77 Aligned_cols=240 Identities=7% Similarity=-0.059 Sum_probs=193.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
.+...|..+...+.+.|++++|..+|+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 356679999999999999999999999998864 4578899999999999999999999999999874 33688899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCc---cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAF---CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-PNVVTYNITI 169 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 169 (259)
.+|...|++++|...++++.+........ .......+..+...+...|++++|..+++++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999998743210000 0001233445688999999999999999999887432 1577899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccC
Q 036731 170 HALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249 (259)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 249 (259)
..+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998873 4468899999999999999999999999998764 335788999999999999999
Q ss_pred Ccchhhhc
Q 036731 250 NSIPQFNR 257 (259)
Q Consensus 250 ~a~~~~~~ 257 (259)
+|++.|++
T Consensus 299 ~A~~~~~~ 306 (365)
T 4eqf_A 299 EAVSNFLT 306 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=5.8e-19 Score=140.24 Aligned_cols=235 Identities=10% Similarity=0.024 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch---hhHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV---VTFNV 91 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 91 (259)
+..+|..+..++.+.|++++|...|+++.+.+ +.+..++..+..++...|++++|...|+++.+.... +. ..+..
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 136 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQ 136 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 55666666666666666666666666666543 234556666666666666666666666666554211 22 33333
Q ss_pred H------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-----------------------------cchhHHHH
Q 036731 92 I------------MDELCKNRKMDEATRLLDLMIQGGVRPDAF-----------------------------CEINIVAY 130 (259)
Q Consensus 92 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~ 130 (259)
+ ...+...|++++|...|+++.+.. |+.. .+.+..++
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 214 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3 222555555555555555554431 1100 00123455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH------------HHHHHhcCChhHHHHHHHHHHhcCCCCc--
Q 036731 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT------------IHALCNDEQMDKAHDLFLDMEVKGVAPN-- 196 (259)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~p~-- 196 (259)
..+..+|...|++++|...|+++..... .+...+..+ ...+...|++++|...|+++.+. .|+
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 5555555555555555555555544321 122222222 44555555555555555555543 222
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 197 ---CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 197 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|...|++++|++.|++
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2345555556666666666666666655432 22445566666666666666666655543
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=3.2e-18 Score=132.43 Aligned_cols=239 Identities=11% Similarity=-0.069 Sum_probs=191.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678888999999999999999999998873 4567888899999999999999999999998874 336788888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCc-----------------------------------------cch---hHHHH
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAF-----------------------------------------CEI---NIVAY 130 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------------------~~~---~~~~~ 130 (259)
++...|++++|...++++.......... ..| +..++
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 9999999999999998887653221100 001 35778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 036731 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210 (259)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 210 (259)
..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 888889999999999999999888764 2356788888889999999999999999888763 34577888888999999
Q ss_pred CCHHHHHHHHHHHhhCCCcc----------chHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 211 NETSKVIELLRSMDKRNVMP----------YASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
|++++|...++++.+..... ...++..+..+|...|+.++|..++++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999998877542111 157888899999999999888887653
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.8e-18 Score=129.88 Aligned_cols=235 Identities=10% Similarity=-0.040 Sum_probs=199.2
Q ss_pred ccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHH
Q 036731 12 CKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91 (259)
Q Consensus 12 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (259)
.+.++..+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 34567778889999999999999999999998763 4466777788889999999999999999999874 336778899
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036731 92 IMDELCKNR-KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIH 170 (259)
Q Consensus 92 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 170 (259)
+...+...| ++++|...|++..+.. |+ +...+..+...+...|++++|...+++..+.... +...+..+..
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~--~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 167 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE--KT-----YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC--TT-----CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC--Cc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 999999999 9999999999998754 32 3478999999999999999999999999887432 5667788999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CccchHHHHHHHHHH
Q 036731 171 ALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN--------VMPYASILSIIVDLL 242 (259)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 242 (259)
.+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. .+....++..+..++
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 9999999999999999998773 4567889999999999999999999999987531 133467899999999
Q ss_pred HHhcccCCcchhhhc
Q 036731 243 VKNEISLNSIPQFNR 257 (259)
Q Consensus 243 ~~~g~~~~a~~~~~~ 257 (259)
...|++++|++.|++
T Consensus 247 ~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 247 RKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHH
Confidence 999999999998875
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.6e-18 Score=129.43 Aligned_cols=233 Identities=11% Similarity=-0.045 Sum_probs=189.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC-ChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN-DGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
+...+..++..+.+.|++++|..+++++.+.. +.+...+..+...+...| ++++|...+++..+.. +.+...|..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 132 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYG 132 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 45567778888889999999999999988763 446778888888999999 8999999999988764 33567788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
.++...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMKG-------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTT-------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhccc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 9999999999999999988875432 23677778899999999999999999988764 335678888889999
Q ss_pred hcCChhHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHh
Q 036731 174 NDEQMDKAHDLFLDMEVKG--------VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (259)
..|++++|...+++..+.. .+.+..++..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHh
Confidence 9999999999998887641 13335678888899999999999999999988764 33677888899999999
Q ss_pred cccCCcchhhhcc
Q 036731 246 EISLNSIPQFNRQ 258 (259)
Q Consensus 246 g~~~~a~~~~~~~ 258 (259)
|++++|.+.|++.
T Consensus 284 g~~~~A~~~~~~a 296 (330)
T 3hym_B 284 GNFENAVDYFHTA 296 (330)
T ss_dssp TCHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHH
Confidence 9999999888763
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=2e-18 Score=133.66 Aligned_cols=244 Identities=7% Similarity=-0.094 Sum_probs=193.0
Q ss_pred Ccccccccc---cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 4 GNREFGVVC---KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 4 a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
|.+.|+..+ +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 344444443 3478899999999999999999999999998863 446889999999999999999999999999876
Q ss_pred CCCCchhh----------HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHH
Q 036731 81 GLQSDVVT----------FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150 (259)
Q Consensus 81 ~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 150 (259)
... +... +..+...+...|++++|...++++.+..... .+..++..+...+...|++++|...+
T Consensus 163 ~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~ 236 (365)
T 4eqf_A 163 NPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-----IDPDLQTGLGVLFHLSGEFNRAIDAF 236 (365)
T ss_dssp CHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSS-----CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred Ccc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-----cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 321 2222 3345788999999999999999998764321 13578999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc-
Q 036731 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM- 229 (259)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 229 (259)
++..+.. +.+..+|..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+....
T Consensus 237 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 237 NAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9998874 3367899999999999999999999999998873 345788999999999999999999999998753211
Q ss_pred ----------cchHHHHHHHHHHHHhcccCCcchhhh
Q 036731 230 ----------PYASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 230 ----------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.+..++..+..++...|+.+.+.++.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 315 RNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp ------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 136789999999999999877766554
No 16
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=4e-18 Score=122.43 Aligned_cols=199 Identities=10% Similarity=-0.017 Sum_probs=151.0
Q ss_pred CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhH
Q 036731 48 NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127 (259)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+++...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. |+ +.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~-----~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PR-----YL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----cH
Confidence 4566677777778888888888888888877663 2356777778888888888888888888877643 33 45
Q ss_pred HHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 036731 128 VAYGCLIDGLCKI-----------GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196 (259)
Q Consensus 128 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 196 (259)
..+..+..++... |++++|...+++..+.... +...+..+..++...|++++|...|++..+.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 7777888888888 9999999999999887432 56788889999999999999999999999887 68
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 197 CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|++.|++.
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8899999999999999999999999998764 336778888999999999999999999875
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=3.9e-18 Score=129.65 Aligned_cols=239 Identities=10% Similarity=-0.067 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+...|..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45566677777888888888888888877653 3366677777778888888888888888877763 335667777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCC-----------------------c-------------------cchhHHHHHH
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDA-----------------------F-------------------CEINIVAYGC 132 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------------~-------------------~~~~~~~~~~ 132 (259)
.+...|++++|.+.++++.+....... . .+.+..++..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 888888888888877776653211000 0 1124678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 036731 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE 212 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 212 (259)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998864 2357788999999999999999999999988763 3467889999999999999
Q ss_pred HHHHHHHHHHHhhCCCcc-----------chHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 213 TSKVIELLRSMDKRNVMP-----------YASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+++|.+.++++.+..... +...+..+..++...|+.++|..++++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999987653221 477888999999999999999888875
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=2.8e-18 Score=128.62 Aligned_cols=221 Identities=10% Similarity=0.072 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCC-chhhHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS-DVVTFNVIMDE 95 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 95 (259)
...-.+..+|...|+++.|+..++. . -+|+..++..+...+...++.++|++.++++...+..| +...+..+..+
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~ 110 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 4556678899999999999876644 2 35677888889999999999999999999998876545 45566777788
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH---HHHHHHH
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY---NITIHAL 172 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~ 172 (259)
+...|++++|++.+++ |+ +...+..++..+.+.|++++|...++++.+.. |+.... ..++..+
T Consensus 111 ~~~~g~~~~Al~~l~~-------~~-----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~ 176 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ-------GD-----SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLA 176 (291)
T ss_dssp HHHTTCHHHHHHHHTT-------CC-----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhC-------CC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHH
Confidence 9999999999999986 32 45789999999999999999999999998864 443211 1233444
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCC-c
Q 036731 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN-S 251 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a 251 (259)
...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +-+..++..++..+...|+.++ +
T Consensus 177 ~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4568999999999999887 35678889999999999999999999999988764 3467788889999999999876 4
Q ss_pred chhhhc
Q 036731 252 IPQFNR 257 (259)
Q Consensus 252 ~~~~~~ 257 (259)
.+++++
T Consensus 255 ~~~~~~ 260 (291)
T 3mkr_A 255 NRYLSQ 260 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566654
No 19
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=8.2e-17 Score=118.06 Aligned_cols=203 Identities=12% Similarity=0.022 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
+..|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 6778889999999999999999999998763 44678889999999999999999999999988743 367888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (259)
+...|++++|.+.++++.+.+..|. +...+..+..++...|++++|...+++..+... .+...+..+...+...
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPE-----RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTT-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHc
Confidence 9999999999999999887333343 568899999999999999999999999988643 3577888999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999998763 4567788888999999999999999999998763
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=5.7e-17 Score=124.69 Aligned_cols=233 Identities=11% Similarity=0.034 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
|+..+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 46778889999999999999999999998763 4467889999999999999999999999999874 336788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-CCccchhHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRP-DAFCEINIVAYGCL------------IDGLCKIGKLKNARELSQSLTRAGLMPN 161 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (259)
++...|++++|...+++..+..... + +...+..+ ...+...|++++|..+++++.+... .+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~ 153 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQE-----EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WD 153 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccC-----hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-Cc
Confidence 9999999999999999998753200 2 34555555 6889999999999999999988743 36
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHH-----
Q 036731 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS----- 236 (259)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 236 (259)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.... +...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH
Confidence 7788999999999999999999999998873 457788999999999999999999999998875422 233322
Q ss_pred -------HHHHHHHHhcccCCcchhhhc
Q 036731 237 -------IIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 237 -------~l~~~~~~~g~~~~a~~~~~~ 257 (259)
.+...+.+.|++++|++.|++
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 259 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYES 259 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 236678999999999988875
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=9e-18 Score=127.67 Aligned_cols=202 Identities=9% Similarity=-0.059 Sum_probs=161.6
Q ss_pred chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-------
Q 036731 50 NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF------- 122 (259)
Q Consensus 50 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 122 (259)
+...+..+...+...|++++|..+++++.+... .+...+..+..++...|++++|...++++.+.. |+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHH
Confidence 455677888899999999999999999988743 367888899999999999999999999988753 3321
Q ss_pred ----------------------cchhHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 036731 123 ----------------------CEINIVAYGCL--------------ID-GLCKIGKLKNARELSQSLTRAGLMPNVVTY 165 (259)
Q Consensus 123 ----------------------~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (259)
.+.+...+..+ .. .+...|++++|...++++.+... .+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHH
Confidence 00011111111 11 36677889999999999988743 367889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHh
Q 036731 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (259)
..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998773 4467889999999999999999999999988764 34677889999999999
Q ss_pred cccCCcchhhhc
Q 036731 246 EISLNSIPQFNR 257 (259)
Q Consensus 246 g~~~~a~~~~~~ 257 (259)
|++++|++.|++
T Consensus 254 g~~~~A~~~~~~ 265 (327)
T 3cv0_A 254 SQYDLAAKQLVR 265 (327)
T ss_dssp TCHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 999999998875
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=1.8e-17 Score=119.05 Aligned_cols=200 Identities=11% Similarity=-0.048 Sum_probs=163.0
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (259)
++++..+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+... .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 4678889999999999999999999999998763 45778899999999999999999999999998743 367788899
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 036731 93 MDELCKN-----------RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161 (259)
Q Consensus 93 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (259)
..++... |++++|+..+++..+. .|+ +...+..+..++...|++++|...|++..+.. .+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPR-----YAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Ccc-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 9999999 9999999999999875 344 56889999999999999999999999999887 58
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8899999999999999999999999998873 4467788899999999999999999998764
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.5e-17 Score=122.26 Aligned_cols=223 Identities=8% Similarity=0.037 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC--Cc----hhh
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ--SD----VVT 88 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 88 (259)
....|..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999999886 78899999999999999999999999998865321 12 578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 036731 89 FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168 (259)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (259)
+..+..++...|++++|...|++..+.. |+ ...+...|++++|...++.+..... .+...+..+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 145 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------------ADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------------HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------------hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHH
Confidence 8899999999999999999999998743 21 1234555666777777776665431 234456666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 169 IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhH
Confidence 666667777777777777666552 3345666666667777777777777777666543 23455666666677777777
Q ss_pred CCcchhhhc
Q 036731 249 LNSIPQFNR 257 (259)
Q Consensus 249 ~~a~~~~~~ 257 (259)
++|.+.|++
T Consensus 224 ~~A~~~~~~ 232 (258)
T 3uq3_A 224 ASALETLDA 232 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666653
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=3e-16 Score=112.85 Aligned_cols=214 Identities=11% Similarity=0.000 Sum_probs=179.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
.++..|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 356788999999999999999999999998763 4467889999999999999999999999998874 33677889999
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036731 94 DELCKN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHAL 172 (259)
Q Consensus 94 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 172 (259)
..+... |++++|...++++.+.+..|. +...+..+..++...|++++|...++++.+... .+...+..+...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 157 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPT-----PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTK 157 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSC-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHH
Confidence 999999 999999999999988333333 568899999999999999999999999988642 3577888999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHH
Q 036731 173 CNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (259)
...|++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+. .|+......
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 999999999999999987632146777888888889999999999999998765 344444433
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.3e-19 Score=139.93 Aligned_cols=214 Identities=10% Similarity=0.083 Sum_probs=88.1
Q ss_pred CCCCcccccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 1 MANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
+++|.+.+++...| .+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|..+++..++.
T Consensus 19 ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 19 LDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 46788888887554 58999999999999999999999653 57789999999999999999999988777664
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036731 81 GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160 (259)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (259)
.+++.+.+.++.+|.+.|+++++.++++ .| +..+|..+...|...|.+++|...|..+
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~p------n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GP------NNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------------CTTTHHHHHHHT-------
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CC------cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 4567888999999999999999888774 23 3479999999999999999999999976
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHH
Q 036731 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVD 240 (259)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 240 (259)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..| .-...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhHHHHHH
Confidence 47999999999999999999999988 268899999999999999999965544322 233 34557888
Q ss_pred HHHHhcccCCcchhhhc
Q 036731 241 LLVKNEISLNSIPQFNR 257 (259)
Q Consensus 241 ~~~~~g~~~~a~~~~~~ 257 (259)
.|.+.|.+++|+.+++.
T Consensus 216 ~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 216 YYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 99999999999888764
No 26
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.7e-18 Score=135.25 Aligned_cols=249 Identities=8% Similarity=-0.105 Sum_probs=168.8
Q ss_pred Ccccccccc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC
Q 036731 4 GNREFGVVC--KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81 (259)
Q Consensus 4 a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 81 (259)
|.+.|+..+ .|++.+|..+..++.+.|++++|...++++.+.+ +.+..++..+..++...|++++|...|+++...+
T Consensus 25 A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 25 AIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444443 3788999999999999999999999999998764 4466788899999999999999999999887664
Q ss_pred CCC-----------------------------------------------------------------------------
Q 036731 82 LQS----------------------------------------------------------------------------- 84 (259)
Q Consensus 82 ~~~----------------------------------------------------------------------------- 84 (259)
...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (514)
T 2gw1_A 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES 183 (514)
T ss_dssp SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSS
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCC
Confidence 211
Q ss_pred -chhhHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCCCCCCc--cchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036731 85 -DVVTFNVIMDELCK---NRKMDEATRLLDLMIQ-----GGVRPDAF--CEINIVAYGCLIDGLCKIGKLKNARELSQSL 153 (259)
Q Consensus 85 -~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (259)
+...+......+.. .|++++|...|+++.+ ....|+.. .+.+..++..+...+...|++++|...++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 263 (514)
T 2gw1_A 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA 263 (514)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 02222233333333 7899999999999887 42233221 1235677888888888889999999888888
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchH
Q 036731 154 TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS 233 (259)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 233 (259)
.+... +...+..+..++...|++++|...++++.... +.+...+..+...+...|++++|...++++.+... .+..
T Consensus 264 l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 339 (514)
T 2gw1_A 264 IELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIF 339 (514)
T ss_dssp HHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSH
T ss_pred HhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHH
Confidence 77543 35666666677777777777777777666542 22445566666666666666666666666655432 2444
Q ss_pred HHHHHHHHHHHhcccCCcchhhhc
Q 036731 234 ILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 234 ~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
.+..+...+...|++++|+..|++
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555566666666666666655543
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=2.4e-16 Score=121.18 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC----chHhHHHH------------HHHHhhcCChhHHHHHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP----NVVTYNSL------------IHGFCYANDGNEAEYLFIEMM 78 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~ 78 (259)
+...|..+...+.+.|++++|...|+++.+. .| +...+..+ ...+...|++++|...++++.
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445555555555555555555555555543 22 22333322 344555556666666665555
Q ss_pred HcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 036731 79 DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158 (259)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (259)
+.. +.+...+..+..++...|++++|...++++.+.. |+ +..++..+...+...|++++|...+++..+...
T Consensus 148 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 148 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SD-----NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 542 2245555666666666666666666666665542 22 346666777777777777777777777665432
Q ss_pred CCChhhHH------------HHHHHHHhcCChhHHHHHHHHHHhcCCCCc-H----HHHHHHHHHHHhcCCHHHHHHHHH
Q 036731 159 MPNVVTYN------------ITIHALCNDEQMDKAHDLFLDMEVKGVAPN-C----VIFTTLMPSFIRKNETSKVIELLR 221 (259)
Q Consensus 159 ~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~ 221 (259)
. +...+. .+...+...|++++|...++++.+.. |+ . ..+..+...+...|++++|...++
T Consensus 220 ~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 220 D-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1 222222 12445667777777777777776652 22 2 224445667777788888888888
Q ss_pred HHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 222 SMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+..+.. +.+..++..+..++...|++++|.+.|++
T Consensus 297 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 297 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777653 33566777777788888888887777764
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=3.3e-17 Score=122.78 Aligned_cols=230 Identities=12% Similarity=0.056 Sum_probs=182.0
Q ss_pred ccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch
Q 036731 8 FGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV 86 (259)
Q Consensus 8 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (259)
++....|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+.
T Consensus 57 ~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~ 130 (291)
T 3mkr_A 57 IKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSL 130 (291)
T ss_dssp SCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSH
T ss_pred hcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCH
Confidence 344456678889999999999999999999999998876545 556667777899999999999999987 4577
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYN 166 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (259)
..+..++.++.+.|++++|.+.++++.+.. |+. ........++..+...|++++|..+|+++.+.. +.+...++
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~---~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~ 204 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQD--EDA---TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLN 204 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC---HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCc---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 889999999999999999999999998763 442 011112233444555689999999999999873 45788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhCCCccchHHHHHHHHHHHHh
Q 036731 167 ITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSK-VIELLRSMDKRNVMPYASILSIIVDLLVKN 245 (259)
Q Consensus 167 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (259)
.+..++...|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~ 278 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKE 278 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHH
Confidence 99999999999999999999988773 4477889999999999999976 57899998876 344433 34457777
Q ss_pred cccCCcchhh
Q 036731 246 EISLNSIPQF 255 (259)
Q Consensus 246 g~~~~a~~~~ 255 (259)
+.++++..-|
T Consensus 279 ~~fd~~~~~~ 288 (291)
T 3mkr_A 279 NDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777766554
No 29
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=1.3e-15 Score=113.13 Aligned_cols=219 Identities=9% Similarity=-0.049 Sum_probs=192.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhh----cCChhHHHHHHHHHHHcCCCCchhhHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY----ANDGNEAEYLFIEMMDRGLQSDVVTFN 90 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (259)
++.++..+...+...|++++|.+.|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6778888999999999999999999999884 356778888899999 999999999999999875 678888
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCh
Q 036731 91 VIMDELCK----NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK----IGKLKNARELSQSLTRAGLMPNV 162 (259)
Q Consensus 91 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 162 (259)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 89999999 999999999999998864 23789999999999 999999999999999875 56
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCccchHH
Q 036731 163 VTYNITIHALCN----DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR----KNETSKVIELLRSMDKRNVMPYASI 234 (259)
Q Consensus 163 ~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (259)
..+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+. ...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHH
Confidence 677888888887 899999999999998874 46778888899999 9999999999999988753 567
Q ss_pred HHHHHHHHHH----hcccCCcchhhhc
Q 036731 235 LSIIVDLLVK----NEISLNSIPQFNR 257 (259)
Q Consensus 235 ~~~l~~~~~~----~g~~~~a~~~~~~ 257 (259)
+..+...|.. .++.++|++.|++
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 7888889998 8999999998875
No 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.5e-17 Score=131.37 Aligned_cols=231 Identities=13% Similarity=-0.000 Sum_probs=197.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+..+|..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.... +.+...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 46778889999999999999999999998874 338888999999999999999999999998764 336778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
++...|++++|...+++..+.... +..++..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPE-------NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSS-------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChh-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHH
Confidence 999999999999999999876432 34789999999999999999999999998764 2356788899999999
Q ss_pred cCChhHHHHHHHHHHhcCC-CCc----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhc
Q 036731 175 DEQMDKAHDLFLDMEVKGV-APN----CVIFTTLMPSFIR---KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 246 (259)
.|++++|...++++..... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+..+|.+.|
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 9999999999999876521 111 3378889999999 999999999999998764 346778889999999999
Q ss_pred ccCCcchhhhc
Q 036731 247 ISLNSIPQFNR 257 (259)
Q Consensus 247 ~~~~a~~~~~~ 257 (259)
++++|.+.|++
T Consensus 464 ~~~~A~~~~~~ 474 (514)
T 2gw1_A 464 DIDEAITLFEE 474 (514)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998875
No 31
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=1.4e-16 Score=116.01 Aligned_cols=203 Identities=16% Similarity=0.128 Sum_probs=158.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
....+|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456678888899999999999999999998763 4467888999999999999999999999998874 33678888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
..+...|++++|...++++.+.. |+ +...+..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--ME-----NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CC-----SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 99999999999999999998754 32 457899999999999999999999999988643 36778889999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
..|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+..
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999998763 4467889999999999999999999999998764
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=1.6e-16 Score=117.80 Aligned_cols=232 Identities=10% Similarity=0.007 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc--hhhHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD--VVTFNVIM 93 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 93 (259)
...+......+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+.+..|+ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667888999999999999999998863 33566889999999999999999999999988432222 23488899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
.++...|++++|...|++..+.. |+ +..++..+...|...|++++|...+++..+.. +.+...+..+...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--TT-----RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TT-----CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--cc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHH
Confidence 99999999999999999998753 32 34899999999999999999999999988763 235666777773445
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-Cccc------hHHHHHHHHHHH
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE---TSKVIELLRSMDKRN-VMPY------ASILSIIVDLLV 243 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~ 243 (259)
..+++++|...++++.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+ ...+..+...|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5569999999999998873 3346778888888888888 888888888876531 1122 267888999999
Q ss_pred HhcccCCcchhhhc
Q 036731 244 KNEISLNSIPQFNR 257 (259)
Q Consensus 244 ~~g~~~~a~~~~~~ 257 (259)
..|++++|++.|++
T Consensus 233 ~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 233 INRDKVKADAAWKN 246 (272)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 99999999999875
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=5.6e-16 Score=120.08 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCC-hhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND-GNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
+...|+.+...+.+.|++++|+..++++.+.. +-+...|+.+..++...|+ +++|+..|++....... +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 45678889999999999999999999999863 4467889999999999997 99999999999987544 788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
.++...|++++|+..|+++.+.. |+ +..+|..+..++...|++++|+..++++.+.... +...|+.+..++.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld--P~-----~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD--AK-----NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC--cc-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 99999999999999999999853 43 5689999999999999999999999999987644 6788999999999
Q ss_pred h-cCChhHH-----HHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHh
Q 036731 174 N-DEQMDKA-----HDLFLDMEVKGVAPNCVIFTTLMPSFIRKN--ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN 245 (259)
Q Consensus 174 ~-~~~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (259)
. .|..++| +..+++..... +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 8 6665887 48888888763 335678888888888888 689999999888 43 244667888899999887
Q ss_pred c--------c-cCCcchhhhcc
Q 036731 246 E--------I-SLNSIPQFNRQ 258 (259)
Q Consensus 246 g--------~-~~~a~~~~~~~ 258 (259)
| + .++|+++|+++
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHH
Confidence 5 2 47888888764
No 34
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=7.9e-16 Score=124.84 Aligned_cols=229 Identities=13% Similarity=0.004 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
.+|..+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++++.+... .+..++..+..++
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHH
Confidence 35777778889999999999999999886 45688899999999999999999999999988743 3678899999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (259)
...|++++|...+++..+.. |+ +..++..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~--~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLN--PE-----NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TT-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 99999999999999998754 33 34789999999999999999999999998874 335678899999999999
Q ss_pred ChhHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhCCCccchHHHHHHHHH
Q 036731 177 QMDKAHDLFLDMEVKG-----VAPNCVIFTTLMPSFIRK----------NETSKVIELLRSMDKRNVMPYASILSIIVDL 241 (259)
Q Consensus 177 ~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (259)
++++|...++++.+.. .......+......+... |++++|...+++..+.. +.+...+..+..+
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQL 471 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9999999999987652 111122244445667777 99999999999998764 3467888999999
Q ss_pred HHHhcccCCcchhhhc
Q 036731 242 LVKNEISLNSIPQFNR 257 (259)
Q Consensus 242 ~~~~g~~~~a~~~~~~ 257 (259)
|...|++++|++.|++
T Consensus 472 ~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 472 KLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 9999999999998875
No 35
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=7.2e-16 Score=119.21 Aligned_cols=222 Identities=13% Similarity=0.014 Sum_probs=162.2
Q ss_pred HHhcCChHHHHH-HHHHHhhCCC-CC--chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC
Q 036731 26 LCKEGFVDKAKE-LFLQMKDENI-NP--NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101 (259)
Q Consensus 26 ~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (259)
+.-.|++++|.+ .+++...... .| +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445678888888 8876654311 11 35668889999999999999999999999874 3467889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------------------
Q 036731 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM---------------------- 159 (259)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------- 159 (259)
+++|...|+++.+.. |+ +..++..+..++...|++++|...++++.+....
T Consensus 114 ~~~A~~~~~~al~~~--~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 114 ELLAISALRRCLELK--PD-----NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred HHHHHHHHHHHHhcC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 999999999998764 33 4588999999999999999999999887764321
Q ss_pred -------------------------C---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 036731 160 -------------------------P---NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 160 -------------------------~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 211 (259)
| +..++..+...+...|++++|...++++.... +.+..++..+...+...|
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGN 265 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcC
Confidence 1 34566667777777888888888888777652 335667777778888888
Q ss_pred CHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
++++|...++++.+.. +.+...+..+..+|.+.|++++|+..|++
T Consensus 266 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 266 QSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888777653 33566777788888888888888777764
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=1.1e-15 Score=112.04 Aligned_cols=198 Identities=9% Similarity=-0.026 Sum_probs=170.0
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (259)
...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.. |+ +..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~-----~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SR-----NARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cC-----cHHHH
Confidence 5678888899999999999999999998874 3367888999999999999999999999998753 32 45889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 036731 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMP-NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209 (259)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 209 (259)
..+...+...|++++|..+++++.+.+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 999999999999999999999998733334 45678888899999999999999999998763 3457889999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
.|++++|...++++.+.. +.+...+..+...+...|+.++|.+.++++
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999998764 346778888999999999999999988753
No 37
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.74 E-value=4.6e-16 Score=126.23 Aligned_cols=244 Identities=10% Similarity=0.020 Sum_probs=162.4
Q ss_pred CCCcccccccc---cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHH
Q 036731 2 ANGNREFGVVC---KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78 (259)
Q Consensus 2 ~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 78 (259)
++|.+.|+..+ +.++.+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..++...|++++|...|+.+.
T Consensus 42 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 120 (537)
T 3fp2_A 42 NEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLS 120 (537)
T ss_dssp C-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555555543 2367788888888888888888888888887763 4466777888888888888888877664321
Q ss_pred Hc------------------------------------------------------------------------------
Q 036731 79 DR------------------------------------------------------------------------------ 80 (259)
Q Consensus 79 ~~------------------------------------------------------------------------------ 80 (259)
..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (537)
T 3fp2_A 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDAL 200 (537)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHH
Confidence 00
Q ss_pred -----------------------------CCCCc--------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCcc
Q 036731 81 -----------------------------GLQSD--------VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFC 123 (259)
Q Consensus 81 -----------------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (259)
...|+ ..++..+...+...|++++|...+++..+.. |
T Consensus 201 ~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~---- 274 (537)
T 3fp2_A 201 QRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--P---- 274 (537)
T ss_dssp HHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C----
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--C----
Confidence 00111 1124444455566666777777776666542 2
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 036731 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203 (259)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 203 (259)
+..++..+...+...|++++|...+++..+... .+..++..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 275 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 350 (537)
T 3fp2_A 275 --TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQL 350 (537)
T ss_dssp --CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHH
T ss_pred --CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 236677777777777777777777777766542 255667777777777777888887777777653 2245667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|++.|++
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 777777888888888887777653 33456777777777888888777777664
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=2.4e-15 Score=108.03 Aligned_cols=201 Identities=9% Similarity=-0.043 Sum_probs=168.9
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHH
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|...++++.+.. |+ +..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-----~~~ 77 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PD-----SAE 77 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-----ChH
Confidence 356778889999999999999999999998874 3367788999999999999999999999998753 32 457
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKI-GKLKNARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206 (259)
Q Consensus 129 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 206 (259)
++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 156 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHH
Confidence 899999999999 999999999999988322333 5678888999999999999999999998763 3357888999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 207 FIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
+...|++++|...++++.+.....+...+..+...+...|+.++|..+++.+
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999999999999887643146677778888889999999888877653
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=3.2e-15 Score=110.85 Aligned_cols=225 Identities=9% Similarity=-0.094 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...+++..+.. +.+..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 56788999999999999999999999998763 4468889999999999999999999999999874 336788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
++...|++++|...++++.+.. |+. ......+..+...|++++|...+++..... +++...+ .++..+..
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~--~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 189 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDD--PND------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLG 189 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTC------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCC------hHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHH
Confidence 9999999999999999998753 332 344445556677899999999998877753 2343344 47777788
Q ss_pred cCChhHHHHHHHHHHhcCCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCc
Q 036731 175 DEQMDKAHDLFLDMEVKGVA--P-NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNS 251 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 251 (259)
.++.++|...+++....... | +..++..+...+...|++++|...+++..+.. |+. +.....++...|++++|
T Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQD 265 (275)
T ss_dssp SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhh
Confidence 88889999999988765211 1 15778889999999999999999999998764 322 22335577888898888
Q ss_pred chhh
Q 036731 252 IPQF 255 (259)
Q Consensus 252 ~~~~ 255 (259)
++.+
T Consensus 266 ~~~~ 269 (275)
T 1xnf_A 266 QDDL 269 (275)
T ss_dssp ----
T ss_pred HHHH
Confidence 8765
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=6.5e-16 Score=114.58 Aligned_cols=219 Identities=11% Similarity=-0.045 Sum_probs=177.7
Q ss_pred HhcCChHHHHHHHHHHhhCCC---CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 036731 27 CKEGFVDKAKELFLQMKDENI---NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD 103 (259)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (259)
...|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 346889999999999987632 1246788889999999999999999999999874 336888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 036731 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHD 183 (259)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 183 (259)
+|...|++..+.. |+ +..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|..
T Consensus 95 ~A~~~~~~al~~~--~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 95 AAYEAFDSVLELD--PT-----YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHHC--TT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhcC--cc-----ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHH
Confidence 9999999998753 32 34899999999999999999999999998863 455555555566677899999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc---chHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP---YASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 184 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
.+++..... +++...+ .++..+...++.++|...+.+..+..... +...+..+..+|...|++++|++.|++
T Consensus 166 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 166 VLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 998887662 3343334 47777888899999999999887653221 257888999999999999999998875
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=5.9e-16 Score=112.72 Aligned_cols=198 Identities=11% Similarity=0.049 Sum_probs=154.0
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHH
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
.....|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. |+ +..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~-----~~~ 92 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SS-----AAT 92 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--Cc-----chH
Confidence 356677888888999999999999999998863 3367888899999999999999999999998753 32 458
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 208 (259)
++..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 899999999999999999999999988753 367788889999999999999999999998763 446788899999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
..|++++|...++++.+.. +.+..++..+..+|...|++++|.+.|++
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999988764 34677899999999999999999998875
No 42
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=1.8e-16 Score=122.45 Aligned_cols=216 Identities=12% Similarity=0.134 Sum_probs=113.6
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC
Q 036731 2 ANGNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81 (259)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 81 (259)
++|.+.|.+ .+|..+|..++.++...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++
T Consensus 49 ~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------ 118 (449)
T 1b89_A 49 KEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------ 118 (449)
T ss_dssp ----------------------------------------------------------------CHHHHTTTTT------
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------
Confidence 567777765 478889999999999999999999988777764 4567889999999999999999998884
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 036731 82 LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN 161 (259)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (259)
.|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .+
T Consensus 119 -~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~ 176 (449)
T 1b89_A 119 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKA------NS 176 (449)
T ss_dssp -CC----------------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TC
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------hhHHHHHHHHHHhccHHHHHHHHHHc------CC
Confidence 367789999999999999999999999966 36999999999999999999999988 27
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHH
Q 036731 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241 (259)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (259)
+.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|..+++...... .-...+|.-+..+
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il 250 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 250 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHH
Confidence 8899999999999999999966555422 334445578999999999999999999988654 4467788888777
Q ss_pred HHHh--cccCCcchhh
Q 036731 242 LVKN--EISLNSIPQF 255 (259)
Q Consensus 242 ~~~~--g~~~~a~~~~ 255 (259)
|++- |+..+.++.|
T Consensus 251 ~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 251 YSKFKPQKMREHLELF 266 (449)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 7765 4445555544
No 43
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=5.8e-15 Score=118.11 Aligned_cols=215 Identities=11% Similarity=0.007 Sum_probs=181.9
Q ss_pred hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCCh-hHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 036731 32 VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG-NEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLD 110 (259)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 110 (259)
++++...+++.... .+.+...+..+...+...|++ ++|+..|++..+... .+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666665544 234778889999999999999 999999999998743 357899999999999999999999999
Q ss_pred HHHhCCCCCCCccchhHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc------
Q 036731 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKI---------GKLKNARELSQSLTRAGLMPNVVTYNITIHALCND------ 175 (259)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------ 175 (259)
+..+.. | +...+..+..++... |++++|...+++..+... -+...|..+..++...
T Consensus 162 ~al~~~--p------~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 162 GALTHC--K------NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHTTC--C------CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhC--C------CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhcc
Confidence 998764 4 238899999999999 999999999999988753 3677899999999988
Q ss_pred --CChhHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCC
Q 036731 176 --EQMDKAHDLFLDMEVKGVA---PNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250 (259)
Q Consensus 176 --~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 250 (259)
|++++|...|++..+.. + -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|+.++
T Consensus 233 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999862 2 378889999999999999999999999998764 3356778889999999999999
Q ss_pred cchhhhccC
Q 036731 251 SIPQFNRQK 259 (259)
Q Consensus 251 a~~~~~~~k 259 (259)
|++.+.+++
T Consensus 311 Ai~~~~~~~ 319 (474)
T 4abn_A 311 LLESKGKTK 319 (474)
T ss_dssp HHHHTTTCC
T ss_pred HHHHhcccc
Confidence 998887654
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=4.3e-14 Score=98.54 Aligned_cols=165 Identities=16% Similarity=0.016 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
+..|..+...+.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 4445555555555555555555555555442 223445555555555555555555555555444221 33444444455
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (259)
+...++++.|...+.+..... |+ +...+..+..++.+.|++++|+..|++..+... .+..+|..+..++...
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~--~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN--TV-----YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC--cc-----chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHC
Confidence 555555555555555544421 21 234455555555555555555555555544321 1334444455555555
Q ss_pred CChhHHHHHHHHHHh
Q 036731 176 EQMDKAHDLFLDMEV 190 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~ 190 (259)
|++++|...|++..+
T Consensus 155 g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 155 GLRDEAVKYFKKALE 169 (184)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 555555555555444
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.4e-14 Score=104.94 Aligned_cols=195 Identities=10% Similarity=0.054 Sum_probs=166.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCc----hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchh
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDEN--INPN----VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVV 87 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 87 (259)
.+..+|..+...+...|++++|.+.+++..+.. ..++ ..++..+...+...|++++|...+++..+.. |+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~- 112 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA- 112 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-
Confidence 678899999999999999999999999987652 1112 5788899999999999999999999999863 442
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (259)
..+...|++++|...++++.... |+ +...+..+...+...|++++|...+++..+... .+..++..
T Consensus 113 ------~~~~~~~~~~~a~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 178 (258)
T 3uq3_A 113 ------DILTKLRNAEKELKKAEAEAYVN--PE-----KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSN 178 (258)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHCC--HH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred ------HHHHHHhHHHHHHHHHHHHHHcC--cc-----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHH
Confidence 45667788999999999998753 22 568899999999999999999999999988753 36788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 179 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 179 RAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999998873 445788999999999999999999999998765
No 46
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=4.8e-15 Score=111.76 Aligned_cols=237 Identities=13% Similarity=-0.001 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc------C
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-------NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR------G 81 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~ 81 (259)
+..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5677889999999999999999999998863 22345677888999999999999999999988764 2
Q ss_pred C-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036731 82 L-QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG------GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154 (259)
Q Consensus 82 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (259)
. +....++..+...|...|++++|...+++..+. +..| ....++..+...+...|++++|..++++..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP-----DVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 224667888999999999999999999988764 2222 256788999999999999999999999987
Q ss_pred Hc------CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCcH-------HHHHHHHHHHHhcCCH
Q 036731 155 RA------GLMP-NVVTYNITIHALCNDEQMDKAHDLFLDMEVK-------GVAPNC-------VIFTTLMPSFIRKNET 213 (259)
Q Consensus 155 ~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~~~~ 213 (259)
+. +..| ...++..+..++...|++++|...++++.+. ...+.. ..+..+...+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 64 2122 3457888899999999999999999998753 111111 1122222333344455
Q ss_pred HHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
.++...++...... +....++..+..+|.+.|++++|++.|++
T Consensus 261 ~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 261 GEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp CCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555666555432 34566788888889999999988888765
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=6.3e-14 Score=97.72 Aligned_cols=171 Identities=11% Similarity=-0.006 Sum_probs=148.6
Q ss_pred chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHH
Q 036731 50 NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129 (259)
Q Consensus 50 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
+...|..+...+...|++++|+..|++..+.... +..++..+..+|...|++++|...+......... +...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-------SAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------CHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-------hHHH
Confidence 6778999999999999999999999999987533 6788999999999999999999999998875433 4578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 036731 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209 (259)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 209 (259)
+..+...+...++++.+...+.+..+... .+...+..+..++...|++++|...|++..+.. +.+..++..+..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHH
Confidence 88889999999999999999999888643 367788899999999999999999999998873 4467889999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCccch
Q 036731 210 KNETSKVIELLRSMDKRNVMPYA 232 (259)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~ 232 (259)
.|++++|.+.|++.++. .|+.
T Consensus 154 ~g~~~~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEK--EEKK 174 (184)
T ss_dssp TTCHHHHHHHHHHHHHT--THHH
T ss_pred CCCHHHHHHHHHHHHhC--CccC
Confidence 99999999999999876 4543
No 48
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.3e-13 Score=104.16 Aligned_cols=215 Identities=9% Similarity=-0.006 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhhCCCCCchHhHHHHHHHHh-------hcCCh-------hHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 036731 33 DKAKELFLQMKDENINPNVVTYNSLIHGFC-------YANDG-------NEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (259)
++|..+|++..... +-+...|..++..+. ..|++ ++|..+|++....-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555565555431 334445555554443 23554 5566666665552111234455556666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCccchhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcC
Q 036731 99 NRKMDEATRLLDLMIQGGVRPDAFCEINIV-AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC-NDE 176 (259)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~ 176 (259)
.|++++|..+|++..+. .|. +.. +|..++..+.+.|++++|..+|++..+.+. ++...|........ ..|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSS-----CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHhc--ccc-----CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcC
Confidence 66666666666665542 222 112 555556666666666666666666555421 12223322222211 245
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-Ccc--chHHHHHHHHHHHHhcccCCcch
Q 036731 177 QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN-VMP--YASILSIIVDLLVKNEISLNSIP 253 (259)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~ 253 (259)
++++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.++|..
T Consensus 184 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 184 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666555441 2244555555555566666666666666655542 232 24455555555555666555555
Q ss_pred hhhc
Q 036731 254 QFNR 257 (259)
Q Consensus 254 ~~~~ 257 (259)
++++
T Consensus 263 ~~~~ 266 (308)
T 2ond_A 263 VEKR 266 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=6.4e-14 Score=103.96 Aligned_cols=203 Identities=11% Similarity=-0.028 Sum_probs=175.5
Q ss_pred CcccccccccC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhh----cCChhHHHHHH
Q 036731 4 GNREFGVVCKP-NTVTYNTIIDGLCK----EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY----ANDGNEAEYLF 74 (259)
Q Consensus 4 a~~~~~~~~~~-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~ 74 (259)
|.+.|+...+| ++.++..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|
T Consensus 25 A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 101 (273)
T 1ouv_A 25 AKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYY 101 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHH
Confidence 44455555544 56788889999999 999999999999999875 77888899999999 99999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh----cCChHHH
Q 036731 75 IEMMDRGLQSDVVTFNVIMDELCK----NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK----IGKLKNA 146 (259)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 146 (259)
++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|
T Consensus 102 ~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A 169 (273)
T 1ouv_A 102 SKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---------DGDGCTILGSLYDAGRGTPKDLKKA 169 (273)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999875 67788899999999 999999999999998865 23678888888988 9999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHH
Q 036731 147 RELSQSLTRAGLMPNVVTYNITIHALCN----DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR----KNETSKVIE 218 (259)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~ 218 (259)
...|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+
T Consensus 170 ~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 170 LASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 99999998874 56778888889999 999999999999999874 26678888888988 999999999
Q ss_pred HHHHHhhCC
Q 036731 219 LLRSMDKRN 227 (259)
Q Consensus 219 ~~~~~~~~~ 227 (259)
.+++..+.+
T Consensus 244 ~~~~a~~~~ 252 (273)
T 1ouv_A 244 NFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 999998876
No 50
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.2e-14 Score=109.50 Aligned_cols=172 Identities=13% Similarity=0.073 Sum_probs=139.1
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHHHc-------CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-------GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG------ 115 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 115 (259)
.+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34677888899999999999999999998863 23335677888999999999999999999988754
Q ss_pred CCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036731 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA------GL-MPNVVTYNITIHALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 188 (259)
+..+ ....++..+...|...|++++|...+++..+. +. +.....+..+...+...|++++|...+++.
T Consensus 105 ~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 105 KDHP-----AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp TTCH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCh-----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2122 25678999999999999999999999998764 21 223456788889999999999999999998
Q ss_pred Hhc------CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 189 EVK------GVAP-NCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 189 ~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
.+. +..| ...++..+...+...|++++|.+.++++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 764 2123 345788889999999999999999999875
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=3e-13 Score=100.04 Aligned_cols=199 Identities=11% Similarity=-0.035 Sum_probs=160.5
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (259)
...+......+...|++++|+..+++..+... .+...+..+..++...|++++|+..+++..+....++. ....|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~ 77 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA----KSADF 77 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC----CHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH----HHHHH
Confidence 44566677888999999999999999998743 35668889999999999999999999999884322221 24568
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 036731 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210 (259)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 210 (259)
..+...+...|++++|...+++..+... .+..++..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999988743 366789999999999999999999999988762 44567777777344455
Q ss_pred CCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcc---cCCcchhhhc
Q 036731 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI---SLNSIPQFNR 257 (259)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 257 (259)
+++++|.+.++++.+.. +.+...+..+..++...|+ .++|+..|++
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 69999999999998764 3346778888888998898 8888887764
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=6.7e-13 Score=102.87 Aligned_cols=217 Identities=10% Similarity=0.050 Sum_probs=177.5
Q ss_pred CHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGF-VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
+..+|+.+..++.+.|+ +++|+..|+++.+.. +-+...|..+..++...|++++|+..|+++.+.... +...|..+.
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg 207 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQ 207 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHH
Confidence 67889999999999997 999999999999874 347789999999999999999999999999988543 788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHHcCCCCChhhHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK-IGKLKNA-----RELSQSLTRAGLMPNVVTYNI 167 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~ 167 (259)
.++...|++++|+..++++.+.. |+ +...|+.+..++.. .|..++| +..+++....... +...|..
T Consensus 208 ~~~~~~g~~~eAl~~~~~al~l~--P~-----~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~ 279 (382)
T 2h6f_A 208 WVIQEFKLWDNELQYVDQLLKED--VR-----NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNY 279 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 99999999999999999999864 33 56899999999999 6665777 5888888876432 5678888
Q ss_pred HHHHHHhcC--ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-hhCCCccchHHH
Q 036731 168 TIHALCNDE--QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN---------ETSKVIELLRSM-DKRNVMPYASIL 235 (259)
Q Consensus 168 li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~ 235 (259)
+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.| ..++|.++++++ .+.+ +.....|
T Consensus 280 l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w 356 (382)
T 2h6f_A 280 LKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYW 356 (382)
T ss_dssp HHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHH
T ss_pred HHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHH
Confidence 888888888 689999999988 33 3456778888899988864 358999999999 6653 3345666
Q ss_pred HHHHHHHHH
Q 036731 236 SIIVDLLVK 244 (259)
Q Consensus 236 ~~l~~~~~~ 244 (259)
..+...+..
T Consensus 357 ~~~~~~l~~ 365 (382)
T 2h6f_A 357 RYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 53
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=1.1e-13 Score=107.77 Aligned_cols=233 Identities=7% Similarity=-0.047 Sum_probs=174.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC----CCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCC------CCchhhHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDE----NINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL------QSDVVTFN 90 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 90 (259)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+.+..+... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455678899999999999998764 1111 346788899999999999999999998875311 11245788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChhhH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA----GL-MPNVVTY 165 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 165 (259)
.+..+|...|++++|...+++..+....... ......++..+..+|...|++++|...+++..+. +. +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQ-PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8899999999999999999987753211110 1113458899999999999999999999998762 22 3345678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCccchHHHHHH
Q 036731 166 NITIHALCNDEQMDKAHDLFLDMEVK----GVAPNCVIFTTLMPSFIRKNE---TSKVIELLRSMDKRNVMPYASILSII 238 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (259)
..+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++.. ........+..+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~l 345 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHH
Confidence 88999999999999999999987654 112222335677788888898 777777776652 123345577789
Q ss_pred HHHHHHhcccCCcchhhhc
Q 036731 239 VDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 239 ~~~~~~~g~~~~a~~~~~~ 257 (259)
...|...|++++|.+.|++
T Consensus 346 a~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 9999999999999998875
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=1.8e-12 Score=97.87 Aligned_cols=212 Identities=8% Similarity=-0.010 Sum_probs=168.4
Q ss_pred cccccccc---CCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChh
Q 036731 6 REFGVVCK---PNTVTYNTIIDGLCK-------EGFV-------DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN 68 (259)
Q Consensus 6 ~~~~~~~~---~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 68 (259)
..|++.+. -++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.|+++
T Consensus 37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~ 116 (308)
T 2ond_A 37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 116 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 34544432 477788888887763 5886 899999999987312335668999999999999999
Q ss_pred HHHHHHHHHHHcCCCCc-hh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHH-hcCChHH
Q 036731 69 EAEYLFIEMMDRGLQSD-VV-TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC-KIGKLKN 145 (259)
Q Consensus 69 ~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 145 (259)
+|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.. |. +...|........ ..|++++
T Consensus 117 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~-----~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 117 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RT-----RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TC-----CTHHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CC-----CHHHHHHHHHHHHHHcCCHHH
Confidence 999999999985 443 33 79999999999999999999999998753 22 2355554444432 3699999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCC--cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036731 146 ARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG-VAP--NCVIFTTLMPSFIRKNETSKVIELLRS 222 (259)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (259)
|..+|+...+.. +-+...|..++..+...|++++|..+|++..... +.| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 2367788999999999999999999999999863 455 467888899999999999999999999
Q ss_pred HhhCC
Q 036731 223 MDKRN 227 (259)
Q Consensus 223 ~~~~~ 227 (259)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88753
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=7.1e-14 Score=111.80 Aligned_cols=199 Identities=11% Similarity=-0.045 Sum_probs=171.9
Q ss_pred CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFV-DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (259)
.+...|..+...+...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|...|++..+. .|+...+..+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l 176 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNL 176 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHH
Confidence 4778899999999999999 99999999998763 345789999999999999999999999999987 4667888999
Q ss_pred HHHHHHc---------CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc--------CChHHHHHHHHHHHH
Q 036731 93 MDELCKN---------RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI--------GKLKNARELSQSLTR 155 (259)
Q Consensus 93 ~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 155 (259)
..++... |++++|+..+++..+.. |+ +...|..+..+|... |++++|...|++..+
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~-----~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VL-----DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 9999999 99999999999998753 43 568999999999999 999999999999998
Q ss_pred cCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036731 156 AGLM--PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSM 223 (259)
Q Consensus 156 ~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 223 (259)
.... -+...|..+..++...|++++|...|++..+.. +-+...+..+...+...|++++|.+.+.++
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6421 377889999999999999999999999998773 335677888889999999999988765443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=7.5e-14 Score=109.55 Aligned_cols=239 Identities=13% Similarity=-0.012 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCch----HhHHHHHHHHhhcCChhHHHHHHHHHHHc----C-CCCchh
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV----VTYNSLIHGFCYANDGNEAEYLFIEMMDR----G-LQSDVV 87 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 87 (259)
..+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|...+++..+. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 445566778899999999999999998863 2232 47888889999999999999999988653 1 122356
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK-----------------LKNARELS 150 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 150 (259)
++..+...|...|++++|...+++..+....... ......++..+...|...|+ +++|...+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 7888899999999999999999887653111000 01245688899999999999 99999998
Q ss_pred HHHHHc----CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCc----HHHHHHHHHHHHhcCCHHHHHHHH
Q 036731 151 QSLTRA----GLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV-APN----CVIFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 151 ~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
++..+. +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 886542 111 1234778888899999999999999998875410 011 236788889999999999999999
Q ss_pred HHHhhCC----C-ccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 221 RSMDKRN----V-MPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 221 ~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
++..+.. . .....++..+...|...|++++|++.|++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9876431 1 11256788889999999999999988865
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=2.3e-14 Score=112.45 Aligned_cols=240 Identities=12% Similarity=-0.039 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc----C-CCCch
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDE----N-INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR----G-LQSDV 86 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 86 (259)
.+|..+...+...|++++|...+++..+. + .+.....+..+...+...|++++|...+++..+. + .....
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 47888999999999999999999988653 1 1224567888889999999999999999987654 1 12234
Q ss_pred hhHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHH
Q 036731 87 VTFNVIMDELCKNRK-----------------MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (259)
.++..+...|...|+ +++|...+++..+....... ......++..+...|...|++++|...
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD-RGAQGRACGNLGNTYYLLGDFQAAIEH 245 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 578888999999999 99999998876542110000 011346888999999999999999999
Q ss_pred HHHHHHcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--C---CcHHHHHHHHHHHHhcCCHHHHHHH
Q 036731 150 SQSLTRAGLM-PN----VVTYNITIHALCNDEQMDKAHDLFLDMEVKGV--A---PNCVIFTTLMPSFIRKNETSKVIEL 219 (259)
Q Consensus 150 ~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~---p~~~~~~~l~~~~~~~~~~~~a~~~ 219 (259)
+++..+.... ++ ..++..+...+...|++++|...+++...... . ....++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (411)
T 4a1s_A 246 HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEY 325 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988754211 11 23778888999999999999999998775410 0 1246788888999999999999999
Q ss_pred HHHHhhC----C-CccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 220 LRSMDKR----N-VMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 220 ~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+++..+. + ......++..+..+|...|++++|.+.|++
T Consensus 326 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9987653 1 112345788899999999999999998875
No 58
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=1.2e-12 Score=90.81 Aligned_cols=163 Identities=16% Similarity=0.046 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555556666666666666666655432 2344555555556666666666666666655542 22344555555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (259)
...|++++|.+.++++.+.. |+ +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PI-----NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcC--cH-----hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 55566666666555555432 11 23455555555555555555555555555442 123344444555555555
Q ss_pred ChhHHHHHHHHHH
Q 036731 177 QMDKAHDLFLDME 189 (259)
Q Consensus 177 ~~~~a~~~~~~~~ 189 (259)
++++|...+++..
T Consensus 159 ~~~~A~~~~~~~~ 171 (186)
T 3as5_A 159 RHEEALPHFKKAN 171 (186)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555444
No 59
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.57 E-value=1.5e-11 Score=98.88 Aligned_cols=218 Identities=10% Similarity=0.031 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhh----cCChhHHHHHHHHHHHcCCCCch
Q 036731 15 NTVTYNTIIDGLCK----EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY----ANDGNEAEYLFIEMMDRGLQSDV 86 (259)
Q Consensus 15 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 86 (259)
++.++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666666666666 667777777777766653 45556666666666 667777777777666654 44
Q ss_pred hhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 036731 87 VTFNVIMDELCK----NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK----IGKLKNARELSQSLTRAGL 158 (259)
Q Consensus 87 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 158 (259)
..+..|...|.. .+++++|...|++..+.+. ...+..+...|.. .+++++|...|++..+.|
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~- 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR---------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG- 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 455556666666 5666777777766665431 2455555555555 556666666666665543
Q ss_pred CCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCcc
Q 036731 159 MPNVVTYNITIHALCN----DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR----KNETSKVIELLRSMDKRNVMP 230 (259)
Q Consensus 159 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 230 (259)
+...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|.+++++..+.+
T Consensus 182 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 182 --NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred --CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 44455555555554 556666666666555543 33344444444443 455555555555554433
Q ss_pred chHHHHHHHHHHHH----hcccCCcchhhh
Q 036731 231 YASILSIIVDLLVK----NEISLNSIPQFN 256 (259)
Q Consensus 231 ~~~~~~~l~~~~~~----~g~~~~a~~~~~ 256 (259)
+...+..+...|.. .++.++|++.|+
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 22333334444444 444444444443
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=6.5e-13 Score=110.74 Aligned_cols=166 Identities=12% Similarity=0.009 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
++.+|+.+...+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 57889999999999999999999999998863 335788999999999999999999999999987433 5788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
+|...|++++|++.|++..+. .|+ +..+|+.+..+|...|++++|+..|++..+.... +...+..+..++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~-----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPA-----FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHh
Confidence 999999999999999999875 344 5689999999999999999999999999887432 57789999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 036731 175 DEQMDKAHDLFLDMEV 190 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~ 190 (259)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999888764
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.1e-13 Score=108.15 Aligned_cols=243 Identities=12% Similarity=-0.012 Sum_probs=180.4
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc----hHhHHHHHHHHhhcCChhHHHHHHHHHHHc----CCCC
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN----VVTYNSLIHGFCYANDGNEAEYLFIEMMDR----GLQS 84 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~ 84 (259)
.+....+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4566778888899999999999999999998863 223 357888889999999999999999987543 2222
Q ss_pred -chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC--------------------h
Q 036731 85 -DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK--------------------L 143 (259)
Q Consensus 85 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~ 143 (259)
...++..+...+...|++++|...+++..+....... ......++..+...|...|+ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 2557788889999999999999999887653211000 01124588889999999999 9
Q ss_pred HHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCc----HHHHHHHHHHHHhcCCH
Q 036731 144 KNARELSQSLTRA----GLMP-NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV-APN----CVIFTTLMPSFIRKNET 213 (259)
Q Consensus 144 ~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~ 213 (259)
++|...+++..+. +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999998876542 1111 234677888888999999999999988765310 111 23677888889999999
Q ss_pred HHHHHHHHHHhhC----CCcc-chHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 214 SKVIELLRSMDKR----NVMP-YASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 214 ~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
++|...+++..+. +..+ ...++..+...|...|++++|++.|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999887642 1111 255777888889999999999888764
No 62
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.56 E-value=2.2e-11 Score=97.96 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhh----cCChhHHHHHHHHHHHcCCCCch
Q 036731 15 NTVTYNTIIDGLCK----EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY----ANDGNEAEYLFIEMMDRGLQSDV 86 (259)
Q Consensus 15 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 86 (259)
++..+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 147 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RD 147 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666667777776 677777777777776654 45556666666666 667777777777776654 44
Q ss_pred hhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 036731 87 VTFNVIMDELCK----NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK----IGKLKNARELSQSLTRAGL 158 (259)
Q Consensus 87 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 158 (259)
..+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++.++|...|++..+.|
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 217 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG- 217 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-
Confidence 555666666665 566777777777666543 22556666666665 566666666666666543
Q ss_pred CCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCcc
Q 036731 159 MPNVVTYNITIHALCN----DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR----KNETSKVIELLRSMDKRNVMP 230 (259)
Q Consensus 159 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 230 (259)
+...+..+...+.. .+++++|..+|++..+.| +...+..+...+.. .+++++|.+++++..+.+
T Consensus 218 --~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--- 289 (490)
T 2xm6_A 218 --DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--- 289 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---
Confidence 34445555555553 556666666666655543 23344444444444 555666666665555443
Q ss_pred chHHHHHHHHHHHHh-----cccCCcchhhh
Q 036731 231 YASILSIIVDLLVKN-----EISLNSIPQFN 256 (259)
Q Consensus 231 ~~~~~~~l~~~~~~~-----g~~~~a~~~~~ 256 (259)
+...+..+...|... ++.++|++.|+
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 223444444555444 45555555443
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.9e-13 Score=106.77 Aligned_cols=241 Identities=9% Similarity=-0.045 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHcC----CC-Cc
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDE----NINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG----LQ-SD 85 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~-~~ 85 (259)
..+|..+...+...|++++|...+++.... +..| ...++..+...+...|++++|...+++..+.. .. ..
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 357888999999999999999999987543 2122 25577888899999999999999999887531 11 11
Q ss_pred hhhHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHH
Q 036731 86 VVTFNVIMDELCKNRK--------------------MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (259)
..++..+...|...|+ +++|...+.+.......... ......++..+...|...|++++
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~ 205 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRD 205 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHH
Confidence 4478888899999999 99999999876542111100 11235688899999999999999
Q ss_pred HHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHH
Q 036731 146 ARELSQSLTRAGLM-PN----VVTYNITIHALCNDEQMDKAHDLFLDMEVK----GVAP-NCVIFTTLMPSFIRKNETSK 215 (259)
Q Consensus 146 a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~ 215 (259)
|...+++..+.... ++ ..++..+...+...|++++|...+++.... +..+ ...++..+...+...|++++
T Consensus 206 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 285 (406)
T 3sf4_A 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 285 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHH
Confidence 99999988653111 11 237888889999999999999999987653 1111 14578888899999999999
Q ss_pred HHHHHHHHhhC----CCc-cchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 216 VIELLRSMDKR----NVM-PYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 216 a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
|...+++..+. +.. ....++..+..+|...|++++|++.|++
T Consensus 286 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 286 AIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999987643 111 1255788899999999999999998875
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=1.9e-13 Score=103.89 Aligned_cols=240 Identities=14% Similarity=-0.001 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc----hHhHHHHHHHHhhcCChhHHHHHHHHHHHc----CCCC-ch
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN----VVTYNSLIHGFCYANDGNEAEYLFIEMMDR----GLQS-DV 86 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 86 (259)
...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +..| ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455666778899999999999999998863 223 367888899999999999999999887643 2222 25
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC--------------------hHHH
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK--------------------LKNA 146 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a 146 (259)
.++..+...+...|++++|...+++..+....... ......++..+...+...|+ +++|
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 67788899999999999999999887643211110 01124588889999999999 9999
Q ss_pred HHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhcCCHHHH
Q 036731 147 RELSQSLTRA----GLM-PNVVTYNITIHALCNDEQMDKAHDLFLDMEVK----GV-APNCVIFTTLMPSFIRKNETSKV 216 (259)
Q Consensus 147 ~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a 216 (259)
...+++.... +.. ....++..+...+...|++++|...+++..+. +. .....++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998886542 111 12346778888899999999999999987654 11 11123677888899999999999
Q ss_pred HHHHHHHhhC----CCc-cchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 217 IELLRSMDKR----NVM-PYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 217 ~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
...+++..+. +.. ....++..+...+...|++++|.+.|++
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999987642 111 1255777888999999999999888765
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.55 E-value=3.1e-13 Score=100.30 Aligned_cols=228 Identities=13% Similarity=-0.028 Sum_probs=155.1
Q ss_pred HhcCChHHHHHHHHHHhhC-------CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc------CC-CCchhhHHHH
Q 036731 27 CKEGFVDKAKELFLQMKDE-------NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR------GL-QSDVVTFNVI 92 (259)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 92 (259)
...|++++|+..+++..+. ..+....++..+...+...|++++|...+++..+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777776542 22334677888999999999999999999988754 22 2245678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC---CCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-Ch
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGV---RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA------GLMP-NV 162 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~ 162 (259)
..+|...|++++|...+++...... .++ .+....++..+...|...|++++|...+++..+. +-.| ..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKF--HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999998875410 011 0125688999999999999999999999998765 1122 35
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCcH-HHHHHHHHHHHhcCC------HHHHHHHHHHHhhCCC
Q 036731 163 VTYNITIHALCNDEQMDKAHDLFLDMEVK-------GVAPNC-VIFTTLMPSFIRKNE------TSKVIELLRSMDKRNV 228 (259)
Q Consensus 163 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~ 228 (259)
.++..+...+...|++++|...+++..+. ...+.. ..+..+.......+. +..+...++.... ..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 248 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DS 248 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CC
Confidence 57888899999999999999999988753 112222 223333333333222 2222222222221 12
Q ss_pred ccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 229 MPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 229 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+....++..+..+|...|++++|.+.|++
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33456778888889999999999888865
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=8e-14 Score=105.96 Aligned_cols=241 Identities=10% Similarity=-0.031 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC-Cc----
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDE----NINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ-SD---- 85 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 85 (259)
...|..+...+...|++++|.+.+++.... +..| ...++..+...+...|++++|...+++..+.... ++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 467888999999999999999999887543 2122 3567788889999999999999999987653111 11
Q ss_pred hhhHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHH
Q 036731 86 VVTFNVIMDELCKNRK--------------------MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (259)
..++..+...+...|+ +++|...+++.......... ......++..+...+...|++++
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 201 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRD 201 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHH
Confidence 3477888899999999 99999998876532110000 01134688889999999999999
Q ss_pred HHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-cHHHHHHHHHHHHhcCCHHH
Q 036731 146 ARELSQSLTRAGL-----MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK----GVAP-NCVIFTTLMPSFIRKNETSK 215 (259)
Q Consensus 146 a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~ 215 (259)
|...+++..+... .....++..+...+...|++++|...+++.... +..+ ...++..+...+...|++++
T Consensus 202 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (338)
T 3ro2_A 202 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 281 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH
Confidence 9999998765311 111337788888999999999999999987654 1111 14567788899999999999
Q ss_pred HHHHHHHHhhC----C-CccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 216 VIELLRSMDKR----N-VMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 216 a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
|...+++..+. + ......++..+...|...|++++|.+.|++
T Consensus 282 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 282 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999987643 1 112245778899999999999999998875
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=2.1e-12 Score=89.61 Aligned_cols=166 Identities=18% Similarity=0.082 Sum_probs=141.7
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (259)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. |+ +..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-----~~~~~ 79 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PD-----NVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-----CHHHH
Confidence 4567778888999999999999999887653 3367788889999999999999999999988753 32 45788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 036731 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210 (259)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 210 (259)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHc
Confidence 999999999999999999999998864 3467788889999999999999999999988773 44678889999999999
Q ss_pred CCHHHHHHHHHHHhhC
Q 036731 211 NETSKVIELLRSMDKR 226 (259)
Q Consensus 211 ~~~~~a~~~~~~~~~~ 226 (259)
|++++|.+.+++..+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999988754
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.54 E-value=8.3e-12 Score=89.99 Aligned_cols=198 Identities=12% Similarity=-0.009 Sum_probs=151.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
.|+..|......+.+.|++++|...|++..+...+++...+..+..++...|++++|+..+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678888999999999999999999999988753367778888999999999999999999999887433 677888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI-----VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN---VVTY 165 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 165 (259)
.++...|++++|...+++..+. .|+. +.. .+|..+...+...|++++|...|++..+. .|+ ...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~---~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 156 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGN---ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDAL 156 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTC---HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCc---HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHH
Confidence 9999999999999999998875 3431 111 56888888999999999999999998876 344 4566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 166 NITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
..+..++...| ...++++...+ ..+...|..... ...+.+++|...+++..+..
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 66767665543 34455555543 233444544432 34567899999999988763
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.54 E-value=1.4e-12 Score=108.78 Aligned_cols=166 Identities=11% Similarity=-0.010 Sum_probs=145.9
Q ss_pred chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHH
Q 036731 50 NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129 (259)
Q Consensus 50 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
+..+|+.|...+.+.|++++|++.|++..+.... +..++..+..+|.+.|++++|+..|++..+. .|+ +..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~-----~~~a 79 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT-----FADA 79 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----CHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----CHHH
Confidence 4678999999999999999999999999987433 5788999999999999999999999999875 444 5689
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 036731 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209 (259)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 209 (259)
|..+..++...|++++|++.|++..+.... +...|..+..++...|++++|...|++..+.. +-+...+..+...+..
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 999999999999999999999999887433 67789999999999999999999999998873 3357789999999999
Q ss_pred cCCHHHHHHHHHHHhh
Q 036731 210 KNETSKVIELLRSMDK 225 (259)
Q Consensus 210 ~~~~~~a~~~~~~~~~ 225 (259)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998887654
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=1.8e-12 Score=100.69 Aligned_cols=232 Identities=9% Similarity=-0.012 Sum_probs=172.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC--CC---CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCC-----CC-chhhHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDEN--IN---PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL-----QS-DVVTFN 90 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~ 90 (259)
....+...|++++|...|++..+.- +. ....++..+...|...|+++.|...+++..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445678999999999999987541 11 1245778888999999999999999998875311 11 245778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChhhH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR-----AGLMPNVVTY 165 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 165 (259)
.+..+|...|++++|...+++..+....... ......++..+..+|...|++++|...+++..+ .. +....++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 8999999999999999999887653211110 012346888999999999999999999999876 32 2236678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCccchHHHHHH
Q 036731 166 NITIHALCNDEQMDKAHDLFLDMEVKG----VAPNCVIFTTLMPSFIRKNE---TSKVIELLRSMDKRNVMPYASILSII 238 (259)
Q Consensus 166 ~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (259)
..+...+...|++++|...+++..+.. -+.....+..+...+...++ +.+|...+++.. ........+..+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~l 342 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHH
Confidence 889999999999999999999987642 12223456666677777888 777777776532 122344567789
Q ss_pred HHHHHHhcccCCcchhhhc
Q 036731 239 VDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 239 ~~~~~~~g~~~~a~~~~~~ 257 (259)
...|...|++++|.+.|++
T Consensus 343 a~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 9999999999999998875
No 71
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=2.5e-13 Score=100.76 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=125.4
Q ss_pred hhcCChhHHHHHHHHHHHc-------CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCCccchhHH
Q 036731 62 CYANDGNEAEYLFIEMMDR-------GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG------GVRPDAFCEINIV 128 (259)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~ 128 (259)
...|++++|...+++..+. ..+....++..+...|...|++++|...+++..+. +..| ....
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~ 86 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP-----AVAA 86 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH-----HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch-----HHHH
Confidence 4668888888888777642 22334677888999999999999999999988754 2122 2568
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCC
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRA------G-LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK------GVAP 195 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~p 195 (259)
++..+..+|...|++++|...+++..+. . .+....++..+...+...|++++|...+++..+. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 8999999999999999999999998764 1 1223567888899999999999999999998765 1122
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 196 -NCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 196 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
...++..+...+...|++++|...+++..+
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356788899999999999999999998875
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=1.3e-11 Score=88.93 Aligned_cols=165 Identities=12% Similarity=-0.044 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
++...+..+..++.+.|++++|++.|++..+.. +-+...|..+...+...|++++|...+++..+... .+...+..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~ 117 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYA 117 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHH
Confidence 677888889999999999999999999998763 33677888999999999999999999999988732 2455666777
Q ss_pred HHHHHcCCHHHHHHHHHHHH---hCCCCCCCccch--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMI---QGGVRPDAFCEI--NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (259)
..+...|.......-+++.. +..+..++ . +...+..+..+|...| ..+++++...+. .+...|...
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~ 188 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEENYKHATDVTS---KKWKTDALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASE 188 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC---HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHH
T ss_pred HHHHHHhHHHHHhccHHHHHHHHHHHHhcCC---CcccHHHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHH
Confidence 77877776554433333322 12233322 2 3567777777776543 444555555432 233444433
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc
Q 036731 169 IHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
. ....+.+++|...+++..+.
T Consensus 189 ~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 189 K--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHhhc
Confidence 3 23456788999999998876
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.49 E-value=1.6e-11 Score=90.45 Aligned_cols=200 Identities=10% Similarity=-0.086 Sum_probs=150.0
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccch
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD---VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (259)
.+...+..+...+.+.|++++|...|+.+.+.... + ...+..+..+|...|++++|...|+++.+...... .
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~----~ 87 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP----R 87 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----T
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc----h
Confidence 35566777777888899999999999998876322 2 56778888899999999999999999887532211 1
Q ss_pred hHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChhhH-----------------HHHHHHHHhcCChhH
Q 036731 126 NIVAYGCLIDGLCK--------IGKLKNARELSQSLTRAGLMPNVVTY-----------------NITIHALCNDEQMDK 180 (259)
Q Consensus 126 ~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~~~~~~ 180 (259)
...++..+..++.. .|++++|...|+++.+.... +.... ..+...+...|++++
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 45678888888888 99999999999999886322 22333 455778899999999
Q ss_pred HHHHHHHHHhcCCCCc----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhCCCcc--chHHHHHHHHHHHH
Q 036731 181 AHDLFLDMEVKGVAPN----CVIFTTLMPSFIRK----------NETSKVIELLRSMDKRNVMP--YASILSIIVDLLVK 244 (259)
Q Consensus 181 a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 244 (259)
|...|+++.+. .|+ ...+..+..++... |++++|...++++.+..... -......+...+..
T Consensus 167 A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 167 AAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 99999999876 333 45677788888766 89999999999998763221 13455666677777
Q ss_pred hcccCCcchhhh
Q 036731 245 NEISLNSIPQFN 256 (259)
Q Consensus 245 ~g~~~~a~~~~~ 256 (259)
.|+.+++..+..
T Consensus 245 ~~~~~~~~~~~~ 256 (261)
T 3qky_A 245 LTELEGDASLAQ 256 (261)
T ss_dssp HHHHHTCTTCCC
T ss_pred HHHhhhhhHHhh
Confidence 788777666543
No 74
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=2e-11 Score=99.08 Aligned_cols=233 Identities=9% Similarity=-0.004 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHhc----CCh----HHHHHHHHHHhhCCCCCchHhHHHHHHHHhh-------cCChh-------HHHHHH
Q 036731 17 VTYNTIIDGLCKE----GFV----DKAKELFLQMKDENINPNVVTYNSLIHGFCY-------ANDGN-------EAEYLF 74 (259)
Q Consensus 17 ~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~ 74 (259)
..|...+...... ++. ++|..+|++.... .+-+...|..+...+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 4566655444332 232 3777889888875 24467888888887775 79987 899999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036731 75 IEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLT 154 (259)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (259)
++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|.. ...+|..++..+.+.|++++|..+|++..
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDID----PTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccC----chHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99986323346788999999999999999999999999885 3431 12589999999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-cc--
Q 036731 155 RAGLMPNVVTYNITIHA-LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV-MP-- 230 (259)
Q Consensus 155 ~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-- 230 (259)
+... .+...|...... +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+. .|
T Consensus 384 ~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 384 EDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred hccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 7632 223333322222 336899999999999988762 33578899999999999999999999999987642 23
Q ss_pred chHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 231 YASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 231 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
....|...+......|+.+.+..++++.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2457888888888899998888877653
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.46 E-value=1.2e-11 Score=92.75 Aligned_cols=212 Identities=12% Similarity=-0.002 Sum_probs=151.2
Q ss_pred ChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc----CCCCc-hhhHHHHHHHHHHcCCHHHH
Q 036731 31 FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR----GLQSD-VVTFNVIMDELCKNRKMDEA 105 (259)
Q Consensus 31 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 105 (259)
++++|...|++. ...|...|++++|...|.+..+. |.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 44677889999999999887653 32222 56888999999999999999
Q ss_pred HHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHhcCChh
Q 036731 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI-GKLKNARELSQSLTRAGLMP-N----VVTYNITIHALCNDEQMD 179 (259)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~ 179 (259)
+..+++..+....... ...-..+++.+..+|... |++++|...|++..+..... + ..++..+...+...|+++
T Consensus 97 ~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 9999887753211110 001246888999999996 99999999999987642110 1 346888899999999999
Q ss_pred HHHHHHHHHHhcCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc-c---hHHHHHHHHHHH--Hhcc
Q 036731 180 KAHDLFLDMEVKGVAPNC------VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-Y---ASILSIIVDLLV--KNEI 247 (259)
Q Consensus 180 ~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~g~ 247 (259)
+|...|++..+....... ..+..+..++...|++++|...+++..+..... + ...+..++.++. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 999999999876322211 256777888999999999999999988642211 1 123445566664 3456
Q ss_pred cCCcchhhhcc
Q 036731 248 SLNSIPQFNRQ 258 (259)
Q Consensus 248 ~~~a~~~~~~~ 258 (259)
+++|++.|+++
T Consensus 256 ~~~A~~~~~~~ 266 (292)
T 1qqe_A 256 LSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhccC
Confidence 77888877654
No 76
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=1.1e-10 Score=94.85 Aligned_cols=202 Identities=7% Similarity=0.009 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 15 NTVTYNTIIDGLCK-------EGFVD-------KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 15 ~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
++..|......+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 67788888888876 79987 89999999986323446888999999999999999999999999986
Q ss_pred CCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcC
Q 036731 81 GLQSD--VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG-LCKIGKLKNARELSQSLTRAG 157 (259)
Q Consensus 81 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~ 157 (259)
.|+ ...|..++..+.+.|++++|..+|++..+.. |. +...|...... +...|+.++|..+|+...+..
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~-----~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RT-----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TC-----CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CC-----chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 443 2578899999999999999999999998752 22 12333333222 346899999999999988763
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 158 LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG-VAPN--CVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 158 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
+-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 422 -p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 422 -GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp -TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2357889999999999999999999999998863 2332 457888888888999999999999998764
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.44 E-value=3.7e-11 Score=90.00 Aligned_cols=207 Identities=10% Similarity=-0.016 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCc-hHhHHHHHHHHhhcCChhHHHHHHHHHHHcC----CCC-ch
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDE----NINPN-VVTYNSLIHGFCYANDGNEAEYLFIEMMDRG----LQS-DV 86 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 86 (259)
..|+.....|...|++++|...|.+.... |-+++ ..+|+.+..+|...|++++|+..+++..+.. -.. ..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46888888999999999999999888653 32222 5688999999999999999999999887542 111 14
Q ss_pred hhHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--
Q 036731 87 VTFNVIMDELCKN-RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV-- 163 (259)
Q Consensus 87 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 163 (259)
.+++.+..+|... |++++|+..|++..+....... ......++..+...+.+.|++++|...|++..+........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 5788899999996 9999999999988754211110 00013578899999999999999999999998864332221
Q ss_pred ----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH------HHHHHHHHHHH--hcCCHHHHHHHHHHHhhC
Q 036731 164 ----TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC------VIFTTLMPSFI--RKNETSKVIELLRSMDKR 226 (259)
Q Consensus 164 ----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 226 (259)
.|..+..++...|++++|...|++..+. .|+. ..+..++.++. ..+++++|...++++...
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 4677788899999999999999998764 3332 13444566664 456788888888777643
No 78
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=1.6e-10 Score=92.29 Aligned_cols=220 Identities=15% Similarity=0.009 Sum_probs=142.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHh----hcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 036731 28 KEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFC----YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD 103 (259)
Q Consensus 28 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (259)
..++.++|++.+++..+.. +.+..++..+...+. ..+++++|.+++++..... +.+..++..+...|...|+++
T Consensus 187 ~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 187 NWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp HSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHH
T ss_pred CchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchH
Confidence 3455555666665555432 223344444433333 2356777888888777664 336677888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHcCCCCChhh
Q 036731 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI-------------------GKLKNARELSQSLTRAGLMPNVVT 164 (259)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~ 164 (259)
+|...+++..+. .|+ +..++..+..+|... +..+.|...++...+... .+..+
T Consensus 265 ~A~~~~~~al~~--~p~-----~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~ 336 (472)
T 4g1t_A 265 KAIELLKKALEY--IPN-----NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRV 336 (472)
T ss_dssp HHHHHHHHHHHH--STT-----CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCC
T ss_pred HHHHHHHHHHHh--CCC-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhh
Confidence 999999998875 344 456777776665432 235677888888777643 35678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHH--HHHHHHH-HHHhcCCHHHHHHHHHHHhhCCC-------------
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV--IFTTLMP-SFIRKNETSKVIELLRSMDKRNV------------- 228 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~------------- 228 (259)
+..+...+...|++++|...|++..+....|... .+..+.. .....|++++|...+++..+...
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~ 416 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 8899999999999999999999998774333221 2223322 23577899999998887765321
Q ss_pred ----------ccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 229 ----------MPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 229 ----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+.+..++..+..+|...|+.++|++.|++
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 23566888999999999999999999876
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=6.6e-11 Score=91.67 Aligned_cols=238 Identities=11% Similarity=-0.007 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHc----CCC--C-c
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDE----NINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDR----GLQ--S-D 85 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 85 (259)
+++.+...+...|++++|...+++.... |... ...++..+...+...|++++|...+++.... +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 5667778888999999999999887653 2110 1233566777888999999999999887653 221 2 2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hh
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV-VT 164 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 164 (259)
...+..+...+...|++++|...+++.......... .....++..+...+...|++++|...+++.......++. ..
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 212 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 212 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh
Confidence 345667888899999999999999988754332211 113457888889999999999999999988754212111 12
Q ss_pred HH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCccch
Q 036731 165 YN-----ITIHALCNDEQMDKAHDLFLDMEVKGVAP---NCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMPYA 232 (259)
Q Consensus 165 ~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 232 (259)
+. ..+..+...|++++|...+++.......+ ....+..+...+...|++++|...+++.... +..++.
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 292 (373)
T 1hz4_A 213 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH
Confidence 22 22344778999999999998887543211 1234667778889999999999999887542 322222
Q ss_pred -HHHHHHHHHHHHhcccCCcchhhhc
Q 036731 233 -SILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 233 -~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
..+..+..++...|+.++|...|++
T Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 293 NRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3666778888999999999887764
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.4e-10 Score=89.89 Aligned_cols=239 Identities=10% Similarity=-0.051 Sum_probs=166.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCch----HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC-Cc----hhhH
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENINPNV----VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ-SD----VVTF 89 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 89 (259)
+......+...|++++|...+++.....-..+. ..++.+...+...|++++|...+++....... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455677899999999999998775312122 24566677888999999999999987653111 11 2335
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--Chhh
Q 036731 90 NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM--P--NVVT 164 (259)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~ 164 (259)
..+...+...|++++|...+++........... .......+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667888999999999999998876432110000 0113456777888999999999999999998764321 1 2346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc--HHHHH----HHHHHHHhcCCHHHHHHHHHHHhhCCCcc---chHHH
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPN--CVIFT----TLMPSFIRKNETSKVIELLRSMDKRNVMP---YASIL 235 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 235 (259)
+..+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999998865411111 11111 23344778999999999999987643221 23356
Q ss_pred HHHHHHHHHhcccCCcchhhhc
Q 036731 236 SIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 236 ~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
..+...+...|++++|.+.+++
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~ 278 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEE 278 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 6788899999999999888764
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=6.3e-11 Score=87.99 Aligned_cols=177 Identities=8% Similarity=0.026 Sum_probs=131.3
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHH
Q 036731 70 AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149 (259)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (259)
|+..+++....+ .++..++..+..++...|++++|++++.+....+..+. +...+..++..+.+.|+.+.|.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~-----~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG-----TTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT-----HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC-----cHHHHHHHHHHHHHCCCHHHHHHH
Confidence 667777776654 44556666888999999999999999998876553222 678999999999999999999999
Q ss_pred HHHHHHcCCCC-----ChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 036731 150 SQSLTRAGLMP-----NVVTYNITIHALCN----DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 150 ~~~~~~~~~~~-----~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
+++|.+. .| +..+...+..++.. .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.+
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 9999875 45 35566666666332 34899999999999776 566444445555889999999999999
Q ss_pred HHHhhCC---------CccchHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 221 RSMDKRN---------VMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 221 ~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
+.+.+.. -+-+..++.-++......|+ +|.++++++
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 9766531 02356666566666666676 777777664
No 82
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.40 E-value=7.5e-11 Score=102.22 Aligned_cols=200 Identities=10% Similarity=0.093 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+..+|..+..++.+.|++++|.+.|.+. -|...|..++.++.+.|++++|.+++....+.. ++....+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 3566777888888888888888887553 266677778888888888888888887666553 23333334777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
+|++.+++++...+. + .+ +...|..+...|...|++++|..+|... ..|..+..++.+
T Consensus 1176 aYAKl~rleele~fI----~---~~------n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI----N---GP------NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred HHHhhcCHHHHHHHH----h---CC------CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 777777766433332 1 11 2345666777777788888888877764 267777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 175 DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
.|++++|.+.+++.. +..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+
T Consensus 1234 Lge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred hCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777776552 234444444444444444444333321 112333344444445555555554444
Q ss_pred h
Q 036731 255 F 255 (259)
Q Consensus 255 ~ 255 (259)
+
T Consensus 1303 l 1303 (1630)
T 1xi4_A 1303 L 1303 (1630)
T ss_pred H
Confidence 4
No 83
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=4.3e-11 Score=93.10 Aligned_cols=204 Identities=10% Similarity=-0.004 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CC----CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCC----CC
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDE--NI----NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL----QS 84 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~ 84 (259)
...+|..+...|...|++++|...+++..+. .. +....+++.+...|...|++++|...+++..+... .+
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 221 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ 221 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH
Confidence 3567889999999999999999999988753 11 11245788888999999999999999998875411 11
Q ss_pred -chhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 036731 85 -DVVTFNVIMDELCKNRKMDEATRLLDLMIQG----GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA--- 156 (259)
Q Consensus 85 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 156 (259)
...++..+..+|...|++++|...+++..+. +..|. ...++..+..+|...|++++|...+++..+.
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS-----LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 1247888999999999999999999988762 22122 4678999999999999999999999987653
Q ss_pred -CCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 157 -GLMPNVVTYNITIHALCNDEQ---MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 157 -~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
+-+.....+..+...+...|+ +++|..++++.... +.....+..+...|...|++++|...+++..+
T Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111122335667778888888 77777777665211 22345677888999999999999999998764
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.40 E-value=1.2e-10 Score=85.73 Aligned_cols=170 Identities=11% Similarity=-0.061 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc---hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC--Cchhh
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN---VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ--SDVVT 88 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 88 (259)
.++..+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|...|++..+.... .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 467778888899999999999999999998763 223 677888999999999999999999999986321 22456
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCCccchhHHHH-----------------HHHHHHHHhcCCh
Q 036731 89 FNVIMDELCK--------NRKMDEATRLLDLMIQGGVRPDAFCEINIVAY-----------------GCLIDGLCKIGKL 143 (259)
Q Consensus 89 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~ 143 (259)
+..+..++.. .|++++|...|+++.+.. |+. .... ..+..+|...|++
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~-----~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNH-----ELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTC-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 7778888888 999999999999998753 331 1222 5678889999999
Q ss_pred HHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhc----------CChhHHHHHHHHHHhc
Q 036731 144 KNARELSQSLTRAGLMP--NVVTYNITIHALCND----------EQMDKAHDLFLDMEVK 191 (259)
Q Consensus 144 ~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~ 191 (259)
++|...|+++.+..... ....+..+..++... |++++|...|+++.+.
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999999998763221 234677777788766 8899999999999876
No 85
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=8.5e-10 Score=88.05 Aligned_cols=221 Identities=14% Similarity=0.005 Sum_probs=159.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC----
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE--------NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG---- 81 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---- 81 (259)
..+..||.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34678999999999999999999999887542 122345788999999999999999999998876421
Q ss_pred --CC-CchhhHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHH---HHhcCChHHHHHHHHHH
Q 036731 82 --LQ-SDVVTFNVIMDELCKN--RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG---LCKIGKLKNARELSQSL 153 (259)
Q Consensus 82 --~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~ 153 (259)
.. ....++..+..++... +++++|+..|++..+. .|+ ++..+..+..+ +...++.++|+..+++.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~-----~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPK-----NPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STT-----CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 11 1245666666666554 5789999999998875 444 34555555554 34567888999999988
Q ss_pred HHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 036731 154 TRAGLMPNVVTYNITIHALCN----DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229 (259)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (259)
.+... .+..++..+...+.. .+++++|...+++..... +.+..++..+...+...|++++|...+++..+.. +
T Consensus 202 l~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 278 (472)
T 4g1t_A 202 IRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-P 278 (472)
T ss_dssp HHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-C
Confidence 87642 245556555555443 467889999999988763 4567788899999999999999999999998764 2
Q ss_pred cchHHHHHHHHHHHH
Q 036731 230 PYASILSIIVDLLVK 244 (259)
Q Consensus 230 ~~~~~~~~l~~~~~~ 244 (259)
.+..++..+..+|..
T Consensus 279 ~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRA 293 (472)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 355666666666644
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=1.1e-10 Score=76.38 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (259)
+|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666666677777777666665542 2345555666666666666666666666666543 224455555666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
..|++++|.+.++++.+.. |. +..++..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~--~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD--PR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666665432 11 2355556666666666666666666665543
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.36 E-value=1.3e-10 Score=82.52 Aligned_cols=189 Identities=13% Similarity=0.032 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc-hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN-VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
..+-.....+.+.|++++|...|++..+. .|+ ...|... .... ...........+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDK--------------NSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcc--------------hhhhhHHHHHHHHHH
Confidence 33444455666777777777777777654 232 2223220 0000 000011222336666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND 175 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 175 (259)
|...|++++|+..|++..+.. |+ +...+..+..++...|++++|...|++..+.... +..++..+..++...
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~--p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA--PN-----NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 777777777777777766542 33 4566777777777777777777777777665322 455666666665544
Q ss_pred CC--hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHH
Q 036731 176 EQ--MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238 (259)
Q Consensus 176 ~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (259)
|+ ...+...++..... .|....+.....++...|++++|...|++.++. .|+......+
T Consensus 136 ~~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 43 33444444444321 222223333444555667777777777777754 4454444433
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=1.7e-10 Score=75.37 Aligned_cols=130 Identities=14% Similarity=0.129 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI 167 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (259)
.|..+...+...|++++|..+++++.+.. |+ +...+..+...+...|++++|...++++...+. .+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--Cc-----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHH
Confidence 46667788888888888888888887643 22 346778888888888999999999888877642 35667778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888899999999988887763 345677888888888899999999988887754
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.35 E-value=2.6e-10 Score=81.00 Aligned_cols=174 Identities=11% Similarity=-0.048 Sum_probs=120.8
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHH
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV-VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (259)
.+......+...|++++|...|++..+. .|+. ..|... .... . .........
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~----------------~----~~~~~~~~~ 58 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDK----------------N----SEISSKLAT 58 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCT----------------T----SHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcc----------------h----hhhhHHHHH
Confidence 3344455677889999999999988876 2332 222110 0000 0 011335566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 211 (259)
.+..+|.+.|++++|...|++..+.... +...+..+..++...|++++|...|++..+.. +-+..++..+...+...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 7889999999999999999999987533 67889999999999999999999999999873 345778888888876655
Q ss_pred C--HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 212 E--TSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 212 ~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
. .+.+...++.... ..|....+.....++...|++++|+..|++
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4 3445555555542 233333455566777888999999998875
No 90
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=4.3e-10 Score=87.33 Aligned_cols=203 Identities=8% Similarity=-0.039 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CC-CC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHc----CCCC
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDE----NI-NP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDR----GLQS 84 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~ 84 (259)
...++..+...|...|+++.|...+++..+. +. .+ ...+++.+...|...|++++|...+++..+. +..+
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3567888999999999999999999988653 11 11 2457788899999999999999999988753 1111
Q ss_pred -chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--
Q 036731 85 -DVVTFNVIMDELCKNRKMDEATRLLDLMIQGG---VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL-- 158 (259)
Q Consensus 85 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 158 (259)
...++..+..+|...|++++|...+++..... ..| ....++..+..++.+.|++++|...+++..+...
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-----LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 23567889999999999999999999887621 111 1467899999999999999999999999876422
Q ss_pred --CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 159 --MPNVVTYNITIHALCNDEQ---MDKAHDLFLDMEVKGVAP-NCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 159 --~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
+.....+..+...+...++ +.+|...+++. +..| ....+..+...|...|++++|...+++..+
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1123345555566667777 77777777662 2222 334667788999999999999999998764
No 91
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=4.9e-10 Score=79.82 Aligned_cols=177 Identities=14% Similarity=0.075 Sum_probs=107.4
Q ss_pred HHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC----CHHHHHHHH
Q 036731 34 KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNR----KMDEATRLL 109 (259)
Q Consensus 34 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 109 (259)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666665543 55566666666666677777777777666654 44555556666655 4 667777777
Q ss_pred HHHHhCCCCCCCccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----cCChhH
Q 036731 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCK----IGKLKNARELSQSLTRAGLM-PNVVTYNITIHALCN----DEQMDK 180 (259)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~ 180 (259)
++..+.+ +...+..+...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++
T Consensus 77 ~~A~~~g---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 77 EKAVEAG---------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHTT---------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHCC---------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 7665543 22566666666665 66777777777776665421 014556666666666 666777
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHhhCCC
Q 036731 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRK-N-----ETSKVIELLRSMDKRNV 228 (259)
Q Consensus 181 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 228 (259)
|..+|++..+. ..+...+..|...|... | ++++|..++++..+.|.
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77777777665 22333555555555432 2 67777777777766654
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.32 E-value=4e-10 Score=80.28 Aligned_cols=178 Identities=12% Similarity=-0.022 Sum_probs=144.8
Q ss_pred CCCccccccccc-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC----ChhHHHHHHHH
Q 036731 2 ANGNREFGVVCK-PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN----DGNEAEYLFIE 76 (259)
Q Consensus 2 ~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~ 76 (259)
++|.+.|....+ -++.++..+...|...+++++|.++|++..+.| +...+..|...|.. + ++++|..+|++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 467777776654 478899999999999999999999999998875 66778888888877 6 89999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh----cCChHHHHH
Q 036731 77 MMDRGLQSDVVTFNVIMDELCK----NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK----IGKLKNARE 148 (259)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 148 (259)
..+.| +...+..|...|.. .+++++|+..|++..+.+...+ ++..+..|...|.. .+++++|..
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA-----AVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH-----HHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc-----hHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 98775 56778888888887 8899999999999987654200 24789999999998 889999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCC
Q 036731 149 LSQSLTRAGLMPNVVTYNITIHALCND-E-----QMDKAHDLFLDMEVKGV 193 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~~~~~~~ 193 (259)
.|++..+. ..+...+..+...|... | ++++|..+|+...+.|.
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999886 23455677777777653 3 89999999999988874
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=7.3e-11 Score=98.53 Aligned_cols=173 Identities=8% Similarity=-0.077 Sum_probs=141.5
Q ss_pred HhcCChHHHHHHHHHHh--------hCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 036731 27 CKEGFVDKAKELFLQMK--------DENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 27 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (259)
...|++++|++.+++.. +. .+.+...+..+...+...|++++|+..|++..+... .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 77899999999999987 33 244677888899999999999999999999988743 367788999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036731 99 NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178 (259)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (259)
.|++++|...|++..+.. |+ +...+..+..++.+.|++++ ...|++..+.+.. +...|..+..++...|++
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~-----~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PG-----ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDR 550 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TT-----CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCH
Confidence 999999999999998753 33 45889999999999999999 9999999887533 667889999999999999
Q ss_pred hHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCC
Q 036731 179 DKAHDLFLDMEVKGVAPN-CVIFTTLMPSFIRKNE 212 (259)
Q Consensus 179 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 212 (259)
++|...|++..+. .|+ ...+..+..++...+.
T Consensus 551 ~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9999999998876 454 5667777777766554
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=8.4e-11 Score=98.15 Aligned_cols=174 Identities=8% Similarity=-0.081 Sum_probs=143.0
Q ss_pred hhcCChhHHHHHHHHHH--------HcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHH
Q 036731 62 CYANDGNEAEYLFIEMM--------DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133 (259)
Q Consensus 62 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (259)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|+..|++..+. .|+ +...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~-----~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGW-----RWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCC-----CHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--Ccc-----hHHHHHHH
Confidence 78899999999999998 43 2335678888999999999999999999999875 343 56899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 036731 134 IDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET 213 (259)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 213 (259)
..++...|++++|...|++..+.... +...|..+..++...|++++ ...|++..+.+ +-+...|..+..++.+.|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999887532 66788899999999999999 99999998873 34677899999999999999
Q ss_pred HHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcc
Q 036731 214 SKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247 (259)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 247 (259)
++|.+.+++..+.+. -+...+..+..++...|+
T Consensus 551 ~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 999999999887642 245667777777766554
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=1.8e-09 Score=80.23 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=135.6
Q ss_pred HHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036731 35 AKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL-QSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113 (259)
Q Consensus 35 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (259)
|+..|++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677787777654 45666667888999999999999999999877654 2367788889999999999999999999998
Q ss_pred hCCCCCCCccchhHHHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036731 114 QGGVRPDAFCEINIVAYGCLIDG--LCKIG--KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDME 189 (259)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (259)
+. .|+. .-.+-.+...++.+ ....| ++++|..+|+++.+. .|+..+-..++.++...|++++|...++.+.
T Consensus 164 ~~--~~d~-~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDT-VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHH-HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--Cccc-cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 3300 00012455555555 33334 899999999998765 3553344455558999999999999999766
Q ss_pred hc-----C----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 190 VK-----G----VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 190 ~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
+. + -+-++.+...++......|+ +|.++++++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 53 0 13466777677766666787 8899999998763
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.31 E-value=1.5e-09 Score=78.02 Aligned_cols=186 Identities=9% Similarity=-0.050 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-C-chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch--hhHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN-P-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV--VTFN 90 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 90 (259)
++..+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3444555666667777777777777777654211 1 1245666666777777777777777777665322111 1233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hH----
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV-TY---- 165 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~---- 165 (259)
.+..++...+.. .+ ..|..+...+...|++++|...|+++.+.. |+.. .+
T Consensus 83 ~~g~~~~~~~~~-----~~------------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~ 137 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATK 137 (225)
T ss_dssp HHHHHHHHHHC-------------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHH
Confidence 333333332210 00 122233334445788999999999998763 3332 22
Q ss_pred -------------HHHHHHHHhcCChhHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 166 -------------NITIHALCNDEQMDKAHDLFLDMEVKGVAPN----CVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 166 -------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
..+...+.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 138 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 138 RLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 23344566777888888888777765 232 2456667777778888888888877776653
No 97
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.30 E-value=1e-09 Score=95.39 Aligned_cols=206 Identities=13% Similarity=0.159 Sum_probs=162.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
-|...|..++.++.+.|++++|.+.+...++.. ++....+.++.+|++.++++....+. . .++...|..+.
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 578889999999999999999999999887763 34434446999999999988644332 2 34566777899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALC 173 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 173 (259)
..|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+-.+|.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 1261 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHh
Confidence 9999999999999999874 479999999999999999999998762 6689999999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHh--cccCCc
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN--EISLNS 251 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a 251 (259)
..|++..|......+ ..++..+..++..|.+.|.+++|..+++..+..+ .-....|.-+..+|.+. ++..++
T Consensus 1262 e~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 999999998876542 3456678899999999999999999998887554 33556666666666554 333444
Q ss_pred chhh
Q 036731 252 IPQF 255 (259)
Q Consensus 252 ~~~~ 255 (259)
++.|
T Consensus 1336 lk~f 1339 (1630)
T 1xi4_A 1336 LELF 1339 (1630)
T ss_pred HHHH
Confidence 4443
No 98
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.30 E-value=1.5e-10 Score=92.09 Aligned_cols=233 Identities=7% Similarity=0.010 Sum_probs=119.9
Q ss_pred CCCcccccccccCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChh---HHHHH
Q 036731 2 ANGNREFGVVCKPNTVTYNTIIDGLCKEG-----FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGN---EAEYL 73 (259)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~ 73 (259)
++|.++|....+.++..+..+...+...+ ++++|...|++..+.|.. ..+..|...|...+..+ .+.+.
T Consensus 55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 56777887777667777777777565555 778999999998876532 24555555554443322 22333
Q ss_pred HHHHHHcCC--------------------------------CCchhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCC
Q 036731 74 FIEMMDRGL--------------------------------QSDVVTFNVIMDELCKNR---KMDEATRLLDLMIQGGVR 118 (259)
Q Consensus 74 ~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~ 118 (259)
+......|. ..++..+..|...|...| +.++|++.|++..+.|..
T Consensus 132 ~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~ 211 (452)
T 3e4b_A 132 ISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV 211 (452)
T ss_dssp HHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH
Confidence 332222221 223335556666666666 666666666666665533
Q ss_pred CCCccchhHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCChhHHHHHHHHHHhc
Q 036731 119 PDAFCEINIVAYGCLIDGLCKI----GKLKNARELSQSLTRAGLMPNVVTYNITIHA-L--CNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~ 191 (259)
+...+..+...|... +++++|...|++.. .| +...+..+... + ...+++++|..+|++..+.
T Consensus 212 -------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 212 -------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp -------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 123335555555443 56667777776665 32 34445555444 3 3466677777777766665
Q ss_pred CCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCccchHHHHHHHHHHHH----hcccCCcchhhh
Q 036731 192 GVAPNCVIFTTLMPSFIRKN-----ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK----NEISLNSIPQFN 256 (259)
Q Consensus 192 ~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 256 (259)
| +...+..|...|. .| ++++|.++|++.. .| +......+...|.. ..+.++|++.|+
T Consensus 281 g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 281 D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 4 4455555555555 34 6777777776665 32 34455555555554 124555655554
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=2.8e-09 Score=76.56 Aligned_cols=166 Identities=10% Similarity=0.003 Sum_probs=103.2
Q ss_pred Cccccccccc--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCch----HhHHHHHHHHhhcCChhHHHHH
Q 036731 4 GNREFGVVCK--PN----TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV----VTYNSLIHGFCYANDGNEAEYL 73 (259)
Q Consensus 4 a~~~~~~~~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~ 73 (259)
|.+.|+..++ |+ ...+..+..++.+.|++++|+..|+++.+.. |+. ..+..+..++...+.. .
T Consensus 23 A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~~~~~~~-----~ 95 (225)
T 2yhc_A 23 AITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTNMALDDS-----A 95 (225)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHHHhhhhh-----h
Confidence 4445555432 33 3578888999999999999999999998762 332 2444444455442210 0
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchh------------HHHHHHHHHHHHhcC
Q 036731 74 FIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN------------IVAYGCLIDGLCKIG 141 (259)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~ 141 (259)
+ ..|..+...+...|++++|...|+++.+.. |+....++ ......+...|.+.|
T Consensus 96 ~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 96 L------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred h------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 011222233344556666666666666542 22100000 011235667889999
Q ss_pred ChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036731 142 KLKNARELSQSLTRAGLMPNV----VTYNITIHALCNDEQMDKAHDLFLDMEVKG 192 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 192 (259)
++++|...|+++.+.. |+. ..+..+..++.+.|++++|.+.++.+...+
T Consensus 162 ~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp CHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 9999999999998863 332 468888999999999999999999988773
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=3.6e-10 Score=84.40 Aligned_cols=165 Identities=10% Similarity=0.044 Sum_probs=133.3
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 036731 83 QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV 162 (259)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 162 (259)
+.+...+..+...+...|++++|...|++.... .|+ +...+..+...+.+.|++++|...+++.... .|+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~-----~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~ 184 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQ-----NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDT 184 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTS-----CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCc-----chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcch
Confidence 445667778888999999999999999999875 344 5688999999999999999999999998765 3444
Q ss_pred hhHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc-cchHHHHHHHH
Q 036731 163 VTYNI-TIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM-PYASILSIIVD 240 (259)
Q Consensus 163 ~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 240 (259)
..... ....+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++.+.... .+...+..++.
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 33222 2233667788888999999988773 446788899999999999999999999999876433 23678899999
Q ss_pred HHHHhcccCCcchhhhc
Q 036731 241 LLVKNEISLNSIPQFNR 257 (259)
Q Consensus 241 ~~~~~g~~~~a~~~~~~ 257 (259)
.+...|+.++|...|++
T Consensus 264 ~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 264 ILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHH
Confidence 99999999999988765
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=1.1e-10 Score=78.37 Aligned_cols=109 Identities=10% Similarity=-0.079 Sum_probs=46.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC
Q 036731 63 YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142 (259)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (259)
..|++++|+..++...... +-+...+..+..+|...|++++|++.|++..+. .|+ +..+|..+..+|...|+
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~-----~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QER-----DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----CHHHHHHHHHHHHHTTC
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHcCc
Confidence 3444444444444443321 112233334444444455555555554444432 222 23444444455555555
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 036731 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180 (259)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (259)
+++|...|++..+.... +...|..+...+.+.|++++
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSS
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHH
Confidence 55555555444443211 33344444444444444443
No 102
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.24 E-value=9.9e-10 Score=87.35 Aligned_cols=194 Identities=12% Similarity=0.011 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhc----CChhHHHHHHHHHHHcCCCCc
Q 036731 13 KPNTVTYNTIIDGLCKEG---FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA----NDGNEAEYLFIEMMDRGLQSD 85 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~ 85 (259)
+.++.++..|...|.+.| ++++|.+.|++..+.| .++...+..+...|... +++++|...|++.. .| +
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~ 247 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---Y 247 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---S
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---C
Confidence 344456666777777777 7777777777777665 33444445555555444 57777777777766 32 4
Q ss_pred hhhHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcC
Q 036731 86 VVTFNVIMDE-L--CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG-----KLKNARELSQSLTRAG 157 (259)
Q Consensus 86 ~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~ 157 (259)
...+..|... + ...+++++|...|++..+.|. ...+..+...|. .| ++++|...|++.. .|
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~---------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g 316 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ---------PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR 316 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC
Confidence 4455555555 3 346777777777777766542 255666666665 44 7777777777666 32
Q ss_pred CCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 036731 158 LMPNVVTYNITIHALCN----DEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR----KNETSKVIELLRSMDKRNV 228 (259)
Q Consensus 158 ~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 228 (259)
+...+..+...|.. ..++++|..+|++..+.|. ......|...|.. ..+..+|..+++...+.|.
T Consensus 317 ---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 317 ---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp ---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred ---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 44555555555554 3367777777777776652 2334444545443 3467777777777666653
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=2.6e-10 Score=78.70 Aligned_cols=162 Identities=14% Similarity=0.041 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH-H
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE-L 96 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 96 (259)
.+......+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++...... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556667777888888888887776542 3356677777777888888888888887766542 233332222211 1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhc
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP-NVVTYNITIHALCND 175 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 175 (259)
...+....|...+++..+. .|+ +...+..+..++...|++++|...|+++.+....+ +...+..+..++...
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPD-----NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 1222223456677766653 333 45677777777777888888888877777654322 244667777777777
Q ss_pred CChhHHHHHHHHHH
Q 036731 176 EQMDKAHDLFLDME 189 (259)
Q Consensus 176 ~~~~~a~~~~~~~~ 189 (259)
|+.++|...|++..
T Consensus 158 g~~~~A~~~y~~al 171 (176)
T 2r5s_A 158 GQGNAIASKYRRQL 171 (176)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77777777776654
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=1.8e-10 Score=77.42 Aligned_cols=143 Identities=8% Similarity=-0.027 Sum_probs=80.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMD 103 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (259)
..+...|++++|+..+....... +-+...+..+...|.+.|++++|.+.|++..+.... +..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 34445566666666666655431 112344455666666667777777777666665322 4566666666666777777
Q ss_pred HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcC
Q 036731 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL-SQSLTRAGLMPNVVTYNITIHALCNDE 176 (259)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (259)
+|+..|++..+. .|+ +..++..+...|.+.|++++|... +++..+... -+..+|......+...|
T Consensus 83 ~A~~~~~~al~~--~p~-----~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPT-----QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHH--CTT-----CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 777776666653 232 345666666666666666655443 355555421 13444544444444444
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.23 E-value=9.5e-10 Score=82.94 Aligned_cols=170 Identities=12% Similarity=0.007 Sum_probs=90.6
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcC----CCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhH
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRG----LQS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
.|......|...|++++|...|.+..+.. ..+ -..+|+.+..+|...|++++|+..|++..+....... .....
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAA 116 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 34444555666667776666666554321 100 1335566666666667776666666665432111110 00123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCc-H
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP-----NVVTYNITIHALCNDEQMDKAHDLFLDMEVK----GVAPN-C 197 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~ 197 (259)
.++..+..+|.. |++++|...|++..+..... ...++..+...+...|++++|...|++.... +..++ .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 456666666666 77777777666654421000 1235556666666677777777776666542 11111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 198 VIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
..+..+..++...|++++|...+++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 244445555556677777777776665
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.23 E-value=2e-10 Score=79.32 Aligned_cols=159 Identities=12% Similarity=0.073 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 036731 89 FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168 (259)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (259)
+..+...+...|++++|...|++..+. .|+ +...+..+..++...|++++|...++...... |+...+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~-----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~ 79 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQS-----RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLI 79 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHT-----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHH
Confidence 334445555566666666665554432 222 33555555666666666666666665554432 222222111
Q ss_pred HHH-HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc-chHHHHHHHHHHHHhc
Q 036731 169 IHA-LCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP-YASILSIIVDLLVKNE 246 (259)
Q Consensus 169 i~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 246 (259)
... +...+....|...+++..+.. +-+...+..+...+...|++++|...++++.+....+ +...+..+..++...|
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 111 111122233555666655541 2235556666666666666666666666666554322 2445566666666666
Q ss_pred ccCCcchhhhc
Q 036731 247 ISLNSIPQFNR 257 (259)
Q Consensus 247 ~~~~a~~~~~~ 257 (259)
+.++|...|++
T Consensus 159 ~~~~A~~~y~~ 169 (176)
T 2r5s_A 159 QGNAIASKYRR 169 (176)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 66666666543
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=1.1e-09 Score=81.77 Aligned_cols=168 Identities=8% Similarity=-0.066 Sum_probs=128.9
Q ss_pred CCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhH
Q 036731 48 NPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127 (259)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+.+...+..+...+...|++++|...|++....... +...+..+..++...|++++|...++++... .|+ ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~-----~~ 185 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQD-----TR 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCS-----HH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcc-----hH
Confidence 445666777888888999999999999999887433 5678888899999999999999999887654 333 22
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA-PNCVIFTTLMPS 206 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~ 206 (259)
.........+...++.+.|...+++...... .+...+..+...+...|++++|...|+++....-. .+...+..+...
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 3333344446677888888988988887643 36778888899999999999999999998876311 125678888999
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 036731 207 FIRKNETSKVIELLRSMD 224 (259)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~ 224 (259)
+...|+.++|...+++..
T Consensus 265 ~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 265 LAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHH
Confidence 999999988888887654
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=1.3e-08 Score=76.15 Aligned_cols=221 Identities=10% Similarity=0.008 Sum_probs=170.8
Q ss_pred HhcCC-hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC--ChhHHHHHHHHHHHcCCCCchhhHHHHHHHH----HHc
Q 036731 27 CKEGF-VDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN--DGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL----CKN 99 (259)
Q Consensus 27 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 99 (259)
.+.|. .++|+++++.+...+ +-+...|+.--..+...+ ++++++++++.+.....+ +..+|+.-..++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 34444 579999999998874 335667888778888888 999999999999987544 566777655555 555
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 100 ---RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK--NARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 100 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
+++++++.+++++.+...+ +..+|+.-.-...+.|.++ +++..++++.+..+. |-..|+.-...+..
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pk-------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPK-------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFS 192 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 7899999999999976433 5588888888888889888 999999999988655 77788777777777
Q ss_pred cCC------hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCC--CccchHHHHHHHHHHHHh
Q 036731 175 DEQ------MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS-KVIELLRSMDKRN--VMPYASILSIIVDLLVKN 245 (259)
Q Consensus 175 ~~~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 245 (259)
.+. ++++++.++++.... +-|...|+.+-..+.+.|+.. .+..+..++.+.+ -..++..+..+.+.|.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 676 889999999988774 447778888888888877744 3556666665432 134677888999999999
Q ss_pred cccCCcchhhhcc
Q 036731 246 EISLNSIPQFNRQ 258 (259)
Q Consensus 246 g~~~~a~~~~~~~ 258 (259)
|+.++|+++|+++
T Consensus 272 ~~~~~A~~~~~~l 284 (306)
T 3dra_A 272 KKYNESRTVYDLL 284 (306)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998764
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.22 E-value=1.2e-09 Score=89.39 Aligned_cols=154 Identities=10% Similarity=-0.049 Sum_probs=110.0
Q ss_pred cCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 036731 29 EGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 108 (259)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478888999998887652 3357788888888999999999999999888764 23577888888899999999999999
Q ss_pred HHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CChhHHHHHH
Q 036731 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND---EQMDKAHDLF 185 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~ 185 (259)
+++..+.. |+ +...+..+..++...|++++|...+++..+... .+...+..+..++... |+.++|.+.+
T Consensus 80 ~~~al~~~--p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 80 LQQASDAA--PE-----HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHC--TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHhcC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 98888753 33 457888889999999999999999998887643 2566788888888888 8899999999
Q ss_pred HHHHhcC
Q 036731 186 LDMEVKG 192 (259)
Q Consensus 186 ~~~~~~~ 192 (259)
++..+.+
T Consensus 152 ~~al~~~ 158 (568)
T 2vsy_A 152 RAAVAQG 158 (568)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 8888763
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.22 E-value=9.2e-10 Score=90.13 Aligned_cols=148 Identities=11% Similarity=-0.010 Sum_probs=118.5
Q ss_pred CCCccccccccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHH
Q 036731 2 ANGNREFGVVCK--P-NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78 (259)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 78 (259)
++|.+.|+...+ | +...|..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567777776653 3 57889999999999999999999999998763 4467889999999999999999999999999
Q ss_pred HcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 036731 79 DRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI---GKLKNARELSQSLTR 155 (259)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 155 (259)
+... .+...+..+..++...|++++|.+.+++..+.. |+ +...+..+..++... |+.++|...+++..+
T Consensus 85 ~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-----~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 85 DAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PE-----EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 8743 367889999999999999999999999998753 33 458899999999999 999999999999988
Q ss_pred cCC
Q 036731 156 AGL 158 (259)
Q Consensus 156 ~~~ 158 (259)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 753
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.16 E-value=5.6e-09 Score=78.12 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=121.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC-CCCch----HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC-Cc----hhhHH
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDEN-INPNV----VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ-SD----VVTFN 90 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 90 (259)
..+..+...|++++|..++++..+.. ..|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677889999999999999988752 22232 13345667777888999999999999874322 22 23688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhh
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQGGVR-PDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA----GLMPN-VVT 164 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~ 164 (259)
.+..+|...|++++|...|++..+.-.. +.. ......++..+..+|.+.|++++|...+++..+. +..+. ..+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999988741100 000 1124458889999999999999999999887643 22222 456
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 036731 165 YNITIHALCNDEQ-MDKAHDLFLDMEV 190 (259)
Q Consensus 165 ~~~li~~~~~~~~-~~~a~~~~~~~~~ 190 (259)
|..+..++...|+ +++|...+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777888888884 5888888777653
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.15 E-value=1.5e-08 Score=71.88 Aligned_cols=137 Identities=14% Similarity=-0.013 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
...+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 3456667888899999999999998874 5688899999999999999999999999998874 3367889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCC---------ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDA---------FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (259)
+...|++++|...|++..+....... ........+..+..++...|++++|...|+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999875322110 011244788999999999999999999999998864
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.15 E-value=2.2e-08 Score=74.94 Aligned_cols=163 Identities=10% Similarity=0.001 Sum_probs=121.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchh----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC---
Q 036731 90 NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEIN----IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM-PN--- 161 (259)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--- 161 (259)
...+..+...|++++|..++++..+..... ++ ...+..+...+...+++++|...+++..+.... ++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYH-----PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCC-----hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 334677889999999999999988743211 12 223445777777888999999999999874322 22
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCcc
Q 036731 162 -VVTYNITIHALCNDEQMDKAHDLFLDMEVK-----GVAPN-CVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMP 230 (259)
Q Consensus 162 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 230 (259)
..+++.+...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 226888999999999999999999998742 11222 347888899999999999999999987642 2222
Q ss_pred -chHHHHHHHHHHHHhcc-cCCcchhhhc
Q 036731 231 -YASILSIIVDLLVKNEI-SLNSIPQFNR 257 (259)
Q Consensus 231 -~~~~~~~l~~~~~~~g~-~~~a~~~~~~ 257 (259)
-..++..+..+|.+.|+ .++|++.|++
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 26788899999999995 4888887764
No 114
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.14 E-value=3e-08 Score=82.19 Aligned_cols=239 Identities=11% Similarity=-0.014 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhcC-------ChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHH-HHHHHHHHcCCCCchhh
Q 036731 17 VTYNTIIDGLCKEG-------FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE-YLFIEMMDRGLQSDVVT 88 (259)
Q Consensus 17 ~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 88 (259)
..|...+..--..+ ..+++..+|+++... .+-+...|-..+..+...|+.++|. ++|++.... .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45666666544433 134566788888876 3557888988888888999999997 999999875 3446667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------CCCCc------cchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036731 89 FNVIMDELCKNRKMDEATRLLDLMIQGGV---------RPDAF------CEINIVAYGCLIDGLCKIGKLKNARELSQSL 153 (259)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (259)
|...+...-+.|+++.|.++|+++.+... .|+.. ......+|...+....+.|+.+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888888999999999999999876310 12100 0002357888899989999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc--c
Q 036731 154 TRAGLMPNVVTYNITIHALCND-EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM--P 230 (259)
Q Consensus 154 ~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~ 230 (259)
.+.-.......|...+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+.|..+|++....... -
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 8761112334454443333344 4589999999999887 3446667778888888899999999999999876432 2
Q ss_pred chHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 231 YASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 231 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
....|...+..-.+.|+.+.+.++.+++
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4568888888888999999888887764
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=6.4e-09 Score=78.40 Aligned_cols=197 Identities=10% Similarity=0.056 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHc----CCCC-ch
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDE----NINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDR----GLQS-DV 86 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 86 (259)
..|+.....|...|++++|...|.+..+. +-.+ -..+|+.+...|...|++++|+..|++..+. |-.. ..
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46888888899999999999999887653 2111 1457888889999999999999999987643 2111 24
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA----GLMPN- 161 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~- 161 (259)
.++..+..+|.. |++++|+..|++.......... ......++..+...|.+.|++++|...|++..+. +..+.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER-LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 577888888988 9999999999987653211110 0112468889999999999999999999998763 11111
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc------HHHHHHHHHHHHhcCCHHHHHHH
Q 036731 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN------CVIFTTLMPSFIRKNETSKVIEL 219 (259)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~ 219 (259)
...+..+..++...|++++|...|++.. . .|+ ......++.++ ..|+.+.+.++
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 2256666777888899999999999988 4 332 12344555555 56777666663
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.10 E-value=2.3e-08 Score=74.78 Aligned_cols=172 Identities=10% Similarity=0.012 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc-----hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC---Cc--h
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN-----VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ---SD--V 86 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 86 (259)
..+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455667788899999999999998876532211 122344566678889999999999998754211 11 4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG----LMP- 160 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~- 160 (259)
.+++.+...|...|++++|...+++..+. ...++. ......++..+..+|...|++++|...+++..+.. ...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 57888999999999999999999988732 111211 11133688999999999999999999999876531 111
Q ss_pred ChhhHHHHHHHHHhcCChhHH-HHHHHHHH
Q 036731 161 NVVTYNITIHALCNDEQMDKA-HDLFLDME 189 (259)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a-~~~~~~~~ 189 (259)
-..+|..+..++...|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145677788888888998888 66676654
No 117
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.09 E-value=4.3e-08 Score=81.27 Aligned_cols=215 Identities=12% Similarity=0.005 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHH-HHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCC---------CC
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAK-ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL---------QS 84 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~~ 84 (259)
+...|-..+..+.+.|+.++|. ++|++.... .+.+...|-..+....+.|+++.|.++|+.+..... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 6677888888888899999997 999999875 455666777888888999999999999999886410 13
Q ss_pred ------------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCCccchhHHHHHHHHHHHHhc-CChHHHHHHH
Q 036731 85 ------------DVVTFNVIMDELCKNRKMDEATRLLDLMIQG-GVRPDAFCEINIVAYGCLIDGLCKI-GKLKNARELS 150 (259)
Q Consensus 85 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~ 150 (259)
...+|...++...+.|..+.|..+|.+..+. +.. +...|...+..-.+. ++.+.|..+|
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-------~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-------TPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-------CTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 2346888888888999999999999999875 211 124454444443444 4599999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036731 151 QSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP--NCVIFTTLMPSFIRKNETSKVIELLRSMDKRNV 228 (259)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (259)
+...+. .+-+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.+..
T Consensus 494 e~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~- 571 (679)
T 4e6h_A 494 ELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF- 571 (679)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS-
T ss_pred HHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999886 33356667788888888999999999999998773211 34678888888899999999999999998763
Q ss_pred ccchHHHHHHHH
Q 036731 229 MPYASILSIIVD 240 (259)
Q Consensus 229 ~~~~~~~~~l~~ 240 (259)
|+......+++
T Consensus 572 -P~~~~~~~f~~ 582 (679)
T 4e6h_A 572 -PEVNKLEEFTN 582 (679)
T ss_dssp -TTCCHHHHHHH
T ss_pred -CCCcHHHHHHH
Confidence 44344444433
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.09 E-value=7.9e-08 Score=71.87 Aligned_cols=171 Identities=10% Similarity=-0.014 Sum_probs=122.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC-
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL---MPN- 161 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~- 161 (259)
...+...+..+...|++++|.+.+.+..+....... .......+..+...+...|++++|...+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345566778888999999999999887765322110 011223345566777888999999999998875321 111
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHh---c-CCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----Ccc
Q 036731 162 -VVTYNITIHALCNDEQMDKAHDLFLDMEV---K-GVAP--NCVIFTTLMPSFIRKNETSKVIELLRSMDKRN----VMP 230 (259)
Q Consensus 162 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~ 230 (259)
..+|+.+...|...|++++|...+++..+ . +-.+ ...++..+...|...|++++|...+++..+.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 34788889999999999999999998873 2 1111 12578888999999999999999999876431 111
Q ss_pred -chHHHHHHHHHHHHhcccCCc-chhhhc
Q 036731 231 -YASILSIIVDLLVKNEISLNS-IPQFNR 257 (259)
Q Consensus 231 -~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 257 (259)
-..++..+..+|.+.|+.++| ...|++
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 266788899999999999999 665553
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.08 E-value=2.8e-08 Score=70.48 Aligned_cols=128 Identities=13% Similarity=-0.128 Sum_probs=101.1
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHH
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (259)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..... |+ +...+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-----~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KH-----LAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-----chHHHHH
Confidence 35556677888899999999987663 5677888889999999999999999999888753 33 4578888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC---------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 133 LIDGLCKIGKLKNARELSQSLTRAGLMP---------------NVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
+..++...|++++|...|++..+..... ....+..+..++...|++++|...|+...+.
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999999988753211 1256777778888888888888888888766
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.03 E-value=1.4e-08 Score=71.28 Aligned_cols=161 Identities=11% Similarity=-0.081 Sum_probs=94.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC
Q 036731 63 YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142 (259)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (259)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++.......... ......++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCC
Confidence 45666666664433332 12224556666666777777777777777665541111000 11244667777777778888
Q ss_pred hHHHHHHHHHHHHc----CCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCc--HHHHHHHHHHHHhcC
Q 036731 143 LKNARELSQSLTRA----GLMP--NVVTYNITIHALCNDEQMDKAHDLFLDMEVKG---VAPN--CVIFTTLMPSFIRKN 211 (259)
Q Consensus 143 ~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~~ 211 (259)
+++|...+++.... +-.| ....+..+...+...|++++|...+++..... -.+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888777776543 1111 13346666777777888888888887765320 0111 234566777788888
Q ss_pred CHHHHHHHHHHHhh
Q 036731 212 ETSKVIELLRSMDK 225 (259)
Q Consensus 212 ~~~~a~~~~~~~~~ 225 (259)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877654
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=3.6e-08 Score=66.80 Aligned_cols=131 Identities=11% Similarity=0.004 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4567788888999999999999999988763 4467888888899999999999999999988774 3367788888999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY--GCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
+...|++++|...+++..+.. |+ +...+ ...+..+...|++++|...+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~--p~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK--PH-----DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TT-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999988753 32 22344 3444447778889999888877643
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=8.5e-07 Score=66.38 Aligned_cols=214 Identities=8% Similarity=-0.026 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCchHhHHHHHHHH----hhc---CChhHHHHHHHHHHHcCCCCc
Q 036731 15 NTVTYNTIIDGLCKEG--FVDKAKELFLQMKDENINPNVVTYNSLIHGF----CYA---NDGNEAEYLFIEMMDRGLQSD 85 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~~a~~~~~~~~~~~~~~~ 85 (259)
+..+|+.--..+...| ++++++++++.+.... +-+..+|+.--..+ ... +++++++.+++.+.+...+ +
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-n 143 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-N 143 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-C
Confidence 4566888778888888 9999999999998864 33566676555444 444 7899999999999987544 8
Q ss_pred hhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHcC
Q 036731 86 VVTFNVIMDELCKNRKMD--EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK------LKNARELSQSLTRAG 157 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~ 157 (259)
..+|+.-..++.+.|.++ ++++.++++.+.+.. |-..|+.-.......+. ++++++.++++....
T Consensus 144 y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~ 216 (306)
T 3dra_A 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC 216 (306)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC
Confidence 888988888888889888 999999999986544 55788887777777776 899999999998876
Q ss_pred CCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHH
Q 036731 158 LMPNVVTYNITIHALCNDEQMDK-AHDLFLDMEVKG--VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234 (259)
Q Consensus 158 ~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (259)
+. |...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+...+.+.|+.++|.++++.+.+.--+.....
T Consensus 217 p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 217 PQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp SS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHH
Confidence 54 88889888888888887544 556777665532 134778899999999999999999999999986421334445
Q ss_pred HHHH
Q 036731 235 LSII 238 (259)
Q Consensus 235 ~~~l 238 (259)
|...
T Consensus 296 W~~~ 299 (306)
T 3dra_A 296 WDYQ 299 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.02 E-value=4.2e-09 Score=78.35 Aligned_cols=195 Identities=10% Similarity=-0.005 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56778888888888999999999998888763 3367778888888888999999999988888763 235677788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
++...|++++|...|++..+.+ |+ +...+...+....+. .++ .-+..........+......+ ..+ .
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~-----~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l-~~l-~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KE-----QRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYL-TRL-I 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HH-----TTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHH-HHH-H
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--cc-----chhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHH-HHH-H
Confidence 8888999999998888876542 11 101122222222211 111 122223333333333333333 332 2
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhc-CCHHHHHHHHHHHhhC
Q 036731 175 DEQMDKAHDLFLDMEVKGVAPNCV-IFTTLMPSFIRK-NETSKVIELLRSMDKR 226 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 226 (259)
.|++++|.+.++...+. .|+.. ....+...+.+. +.+++|.++|.++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 57888888888777655 44433 333333334443 5677888888877653
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=5e-08 Score=62.52 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 35788899999999999999999999998764 2367788889999999999999999999998763 446788889999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhc
Q 036731 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 246 (259)
.+...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcc
Confidence 9999999999999999988764 234556666666665543
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=3.9e-08 Score=63.01 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 6788889999999999999999999998763 4467788899999999999999999999998874 3367788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (259)
+...|++++|...++++.+.. |+ +...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~--~~-----~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD--PN-----NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--CC-----cHHHHHHHHHHHHhc
Confidence 999999999999999988753 33 345666665555443
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.01 E-value=4.7e-08 Score=66.22 Aligned_cols=127 Identities=9% Similarity=0.026 Sum_probs=65.4
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHH
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (259)
.+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. |+ +..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~-----~~~~~~~ 86 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KK-----YIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-----cHHHHHH
Confidence 34455555566666666666666665542 2245555555666666666666666666555432 22 2345555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHhcCChhHHHHHHHHH
Q 036731 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNI--TIHALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~ 188 (259)
+..++...|++++|...+++..+.... +...+.. ....+...|++++|...+...
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 556666666666666666655554211 2222222 222244445555555555443
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.01 E-value=4.6e-08 Score=63.60 Aligned_cols=120 Identities=8% Similarity=-0.062 Sum_probs=100.2
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (259)
..+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4467889999999999999999999999998763 3467888999999999999999999999998874 3367888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (259)
..++...|++++|.+.|++..+.. |. +...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~--p~-----~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD--SS-----CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--GG-----GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC--CC-----chHHHHHHHHHHHHhc
Confidence 999999999999999999988753 22 3467777777776655
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=6.2e-08 Score=62.96 Aligned_cols=121 Identities=5% Similarity=-0.098 Sum_probs=101.5
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 036731 124 EINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203 (259)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 203 (259)
..+...+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 44778999999999999999999999999987642 367788889999999999999999999998763 3467888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcc
Q 036731 204 MPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247 (259)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 247 (259)
..++...|++++|.+.+++..+.. +.+...+..+..++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcC
Confidence 999999999999999999988764 2355677777777776653
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.00 E-value=2.2e-08 Score=70.35 Aligned_cols=164 Identities=10% Similarity=-0.066 Sum_probs=117.0
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc----CCC-CchhhHHHHHHHHHHcC
Q 036731 26 LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR----GLQ-SDVVTFNVIMDELCKNR 100 (259)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~ 100 (259)
....|++++|.++++.+... .......+..+...+...|++++|...+++.... +.. ....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34689999999966555432 2245678888999999999999999999988752 222 23456788889999999
Q ss_pred CHHHHHHHHHHHHhCCC-CCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHh
Q 036731 101 KMDEATRLLDLMIQGGV-RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA----GLM-PNVVTYNITIHALCN 174 (259)
Q Consensus 101 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~ 174 (259)
++++|...+++...... .++. .......+..+...+...|++++|...+++..+. +.. ....++..+...+..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPED-PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCcc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 99999999988765311 1100 0113567888999999999999999999987643 111 112345778888999
Q ss_pred cCChhHHHHHHHHHHhc
Q 036731 175 DEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~ 191 (259)
.|++++|...+++..+.
T Consensus 160 ~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999998876643
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.00 E-value=6.1e-08 Score=62.65 Aligned_cols=121 Identities=7% Similarity=-0.075 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 56788899999999999999999999998764 2367788889999999999999999999998763 345778889999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccC
Q 036731 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 249 (259)
.+...|++++|...+++..+.. +.+...+..+..++...|+.+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999988764 235677888888888888753
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=4.3e-08 Score=63.52 Aligned_cols=98 Identities=11% Similarity=-0.023 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
...|......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+... .+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 4678889999999999999999999998763 45788999999999999999999999999998743 367889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 036731 96 LCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~ 115 (259)
+...|++++|.+.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.99 E-value=2.7e-07 Score=69.91 Aligned_cols=229 Identities=11% Similarity=0.023 Sum_probs=165.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC-ChhHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN-DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (259)
++.+-....+.+..++|+++++.+...+ +-+..+|+.--..+...| ++++++.+++.+.....+ +..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 3444444455556689999999999874 335667787777777778 599999999999987544 7788888777777
Q ss_pred Hc-C-CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChhhHHH
Q 036731 98 KN-R-KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK--------NARELSQSLTRAGLMPNVVTYNI 167 (259)
Q Consensus 98 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ 167 (259)
.. + ++++++++++++.+.. |. +..+|+.-.-...+.|.++ ++++.++++.+..+. |...|+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d--pk-----Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~ 206 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD--PK-----NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGW 206 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC--TT-----CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 76 7 8899999999998754 33 4577877776766666666 899999999987655 7788888
Q ss_pred HHHHHHhcCC-------hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH--------------------HHHHHHH
Q 036731 168 TIHALCNDEQ-------MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNET--------------------SKVIELL 220 (259)
Q Consensus 168 li~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~--------------------~~a~~~~ 220 (259)
....+.+.+. ++++++.+++..... +-|...|+.+-..+.+.|+. .......
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFG 285 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHH
Confidence 8888777776 678888888888763 34667777766666665543 3344444
Q ss_pred HHHhhCC-----CccchHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 221 RSMDKRN-----VMPYASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 221 ~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
.++...+ -.++...+..+++.|...|+.++|.++++.+
T Consensus 286 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 286 FPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4443322 1357778889999999999999999888764
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=4.4e-08 Score=63.48 Aligned_cols=111 Identities=10% Similarity=-0.059 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
....+......|.+.|++++|...|++..+... .+...|..+..++...|++++|...+++..+.+ +.+...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 457888899999999999999999999988753 367889999999999999999999999998874 446788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHH
Q 036731 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (259)
++...|++++|.+.|++.++..+ -+......+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P-~~~~a~~~l~ 122 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDP-SNEEAREGVR 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCc-CCHHHHHHHH
Confidence 99999999999999999987642 2444444443
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.98 E-value=8.4e-09 Score=76.71 Aligned_cols=192 Identities=10% Similarity=-0.015 Sum_probs=129.9
Q ss_pred chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHH
Q 036731 50 NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVA 129 (259)
Q Consensus 50 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
+...+..+...+...|++++|...|++...... .+...|..+..+|...|++++|...+++..+. .|+ +...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~-----~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQ-----SVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTT-----CHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC-----CHHH
Confidence 556788888999999999999999999998743 37788999999999999999999999998875 444 5688
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 036731 130 YGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209 (259)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 209 (259)
+..+..++...|++++|...|++..+.+.. +...+...+....+. ..+.. +..........+......+.. + .
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~ 147 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-I 147 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-H
Confidence 999999999999999999999998765311 111222222222211 11111 222233333444444444433 2 3
Q ss_pred cCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHh-cccCCcchhhhc
Q 036731 210 KNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKN-EISLNSIPQFNR 257 (259)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 257 (259)
.|++++|.+.+++..+.. +.+......+...+.+. +..++|.++|.+
T Consensus 148 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 148 AAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp HHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999998887653 22334444444445554 556777777754
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.97 E-value=3.7e-08 Score=63.74 Aligned_cols=121 Identities=13% Similarity=0.000 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 456788889999999999999999999998763 4467888899999999999999999999998874 33577888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCCh
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL 143 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (259)
.++...|++++|...+++..+.. |+ +...+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~--p~-----~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD--PD-----NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TT-----CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC--cc-----chHHHHHHHHHHHHHhcC
Confidence 99999999999999999988753 33 447788888888877764
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.97 E-value=2.3e-08 Score=76.32 Aligned_cols=144 Identities=10% Similarity=-0.023 Sum_probs=108.7
Q ss_pred CCcccccccc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc--------------hHhHHHHHHHHhhcC
Q 036731 3 NGNREFGVVC--KP-NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN--------------VVTYNSLIHGFCYAN 65 (259)
Q Consensus 3 ~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~ 65 (259)
.|...++..+ .| +...|..+...+.+.|++++|...|++..+..-... ...|..+..++.+.|
T Consensus 131 ~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g 210 (336)
T 1p5q_A 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210 (336)
T ss_dssp CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555443 23 456788888889999999999999999887631111 478888888899999
Q ss_pred ChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHH
Q 036731 66 DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKN 145 (259)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (259)
++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+. .|+ +..++..+..++...|+.++
T Consensus 211 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~-----~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 211 AFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPN-----NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSS-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCC-----CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888774 336778888888999999999999999888875 333 45788888888888888887
Q ss_pred H-HHHHHHHH
Q 036731 146 A-RELSQSLT 154 (259)
Q Consensus 146 a-~~~~~~~~ 154 (259)
| ...|+.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7 44566554
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.95 E-value=2.8e-08 Score=68.39 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=81.1
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH-HHHcCCH--H
Q 036731 27 CKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE-LCKNRKM--D 103 (259)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 103 (259)
...|++++|...++...+.. +.+...|..+...+...|++++|...|++...... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 34667777777777776653 34566777777777788888888888877776532 255566666666 6677777 7
Q ss_pred HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 104 EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
+|...+++..+.. |+ +...+..+..++...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~--p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD--SN-----EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CC-----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888877777643 32 3466777777777788888888888777765
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.95 E-value=4.9e-08 Score=65.31 Aligned_cols=100 Identities=14% Similarity=0.018 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
+...+..+...+.+.|++++|...|++...... .+...|..+..++...|++++|...|++..... +-++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 667888999999999999999999999998753 367889999999999999999999999999873 335678889999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC
Q 036731 206 SFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
++...|++++|...|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.94 E-value=1.5e-08 Score=69.74 Aligned_cols=121 Identities=6% Similarity=0.026 Sum_probs=87.1
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHH-HHhc
Q 036731 62 CYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDG-LCKI 140 (259)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 140 (259)
...|++++|...++...... +.+...+..+..+|...|++++|...|++..+.. |+ +...+..+..+ +...
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-----~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GE-----NAELYAALATVLYYQA 92 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CS-----CHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-----CHHHHHHHHHHHHHhc
Confidence 45678888888888877763 3366778888888888888888888888877643 32 34677777777 6778
Q ss_pred CCh--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 141 GKL--KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 141 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
|++ ++|...+++..+... .+...+..+...+...|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 887 888888888877642 24567777777888888888888888887766
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=4e-08 Score=65.77 Aligned_cols=100 Identities=14% Similarity=0.037 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+...+..+...+.+.|++++|...|++..... +-+...|..+..++...|++++|+..|++....... +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 45678888899999999999999999999874 447888999999999999999999999999987533 6788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC
Q 036731 95 ELCKNRKMDEATRLLDLMIQGG 116 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~ 116 (259)
+|...|++++|...|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998753
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.91 E-value=8.6e-08 Score=73.16 Aligned_cols=124 Identities=6% Similarity=-0.110 Sum_probs=70.7
Q ss_pred chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc--------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 036731 50 NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD--------------VVTFNVIMDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 50 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
+...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666677777777777777777766532211 345555666666666666666666665553
Q ss_pred CCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 036731 116 GVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (259)
. |+ +...+..+..+|...|++++|...|++..+... -+...+..+..++...|+.+++
T Consensus 226 ~--p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D--SN-----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C--TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 345555666666666666666666666555432 1344555555555555555555
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.91 E-value=1.7e-07 Score=68.80 Aligned_cols=197 Identities=8% Similarity=-0.039 Sum_probs=141.3
Q ss_pred hcCChHHHHHHHHHHhhCCCCCchHhHHHH-------HHHHhhcCChhHHHHHHHHHHHcCCCCc---------------
Q 036731 28 KEGFVDKAKELFLQMKDENINPNVVTYNSL-------IHGFCYANDGNEAEYLFIEMMDRGLQSD--------------- 85 (259)
Q Consensus 28 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 85 (259)
..++...|.+.|.++.... +-....|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 6899999999999998873 3356777777 4555555555666555554443 2221
Q ss_pred -------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 036731 86 -------VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL 158 (259)
Q Consensus 86 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (259)
......+...+...|++++|.++|+.+...+ |+ +. ....+...+.+.+++++|+..|+......
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~-----~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~- 165 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SE-----HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP- 165 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CH-----HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc-----hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-
Confidence 1233446677889999999999998876532 32 33 66777779999999999999998554431
Q ss_pred CCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHH
Q 036731 159 MPN--VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN--CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI 234 (259)
Q Consensus 159 ~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (259)
.|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...+ |+...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~ 243 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKV 243 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH
Confidence 111 23677788899999999999999999985543253 3466677788899999999999999999874 44444
Q ss_pred HHHH
Q 036731 235 LSII 238 (259)
Q Consensus 235 ~~~l 238 (259)
...|
T Consensus 244 ~~aL 247 (282)
T 4f3v_A 244 AAAL 247 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=4e-08 Score=65.65 Aligned_cols=98 Identities=12% Similarity=-0.090 Sum_probs=58.4
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (259)
...+..+...+...|++++|...|+....... .+...|..+..+|...|++++|+..|++..... |+ +...+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~-----~~~~~ 92 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IX-----EPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----CTHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----CchHH
Confidence 34455555566666666666666666665532 245556666666666666666666666665532 22 33566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 131 GCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
..+..+|...|++++|...|+...+.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666666666553
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.84 E-value=1.3e-07 Score=66.35 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCch----------------HhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV----------------VTYNSLIHGFCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~ 79 (259)
...+..+...+.+.|++++|...|++..+.. +.+. ..+..+..++...|++++|+..++...+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3345555666666666666666666665531 1111 4555555666666666666666666655
Q ss_pred cCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHH
Q 036731 80 RGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147 (259)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (259)
.. +.+...+..+..+|...|++++|...|++..+. .|+ +..++..+..++...++.+++.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~-----~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPN-----NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STT-----CHHHHHHHHHHHHHHHHHHC--
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC-----cHHHHHHHHHHHHHHHHHHHHH
Confidence 42 224455555666666666666666666665543 222 2345555555555555444444
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.84 E-value=7.5e-08 Score=64.29 Aligned_cols=99 Identities=11% Similarity=-0.073 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
+...+..+...+...|++++|...|+....... .+...|..+..++...|++++|...|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 567888899999999999999999999988753 377788889999999999999999999998773 335678888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 036731 206 SFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~ 226 (259)
++...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.83 E-value=2e-07 Score=60.39 Aligned_cols=112 Identities=12% Similarity=0.063 Sum_probs=80.0
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAY 130 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (259)
...+..+...+.+.|++++|+..|++..+... .+...|..+..+|...|++++|+..+++..+...........-..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34567788888888999999999988887643 35778888889999999999999999887754221110000112467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 036731 131 GCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTY 165 (259)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (259)
..+..++...|++++|+..|++.... .|+..+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 77788888888999999888887764 3454443
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.83 E-value=1.4e-08 Score=71.35 Aligned_cols=149 Identities=16% Similarity=0.061 Sum_probs=73.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc---------------hhh
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD---------------VVT 88 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~ 88 (259)
......|+++++.+.|+.-.... ......+..+...+...|++++|...|++..+...... ...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33444555555555554322210 11344566667777778888888888887776421111 145
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 036731 89 FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168 (259)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (259)
+..+..+|...|++++|+..+++..+. .|+ +...+..+..+|...|++++|...|++..+... -+...+..+
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~--~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 162 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKI--DKN-----NVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--Ccc-----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHH
Confidence 555555566666666666666655543 222 335555556666666666666666665555421 133344444
Q ss_pred HHHHHhcCChhHH
Q 036731 169 IHALCNDEQMDKA 181 (259)
Q Consensus 169 i~~~~~~~~~~~a 181 (259)
..++...++.+++
T Consensus 163 ~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 163 ELCVNKLKEARKK 175 (198)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.3e-06 Score=68.83 Aligned_cols=197 Identities=10% Similarity=-0.021 Sum_probs=141.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCc----------------hHhHHHHHHHHhhcCChhHHHHHHHHHHHcC-CCCc
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPN----------------VVTYNSLIHGFCYANDGNEAEYLFIEMMDRG-LQSD 85 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 85 (259)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999987522111 1246788999999999999999998876431 1112
Q ss_pred h----hhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 036731 86 V----VTFNVIMDELCKNRKMDEATRLLDLMIQ----GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA- 156 (259)
Q Consensus 86 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 156 (259)
. .+.+.+...+...|+++.|..++..... .+..+. -..++..+...|...|++++|..++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL-----KHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH-----HHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 2 2233344445567889999999887653 222221 3578889999999999999999999987643
Q ss_pred -CC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 157 -GL--MP-NVVTYNITIHALCNDEQMDKAHDLFLDMEVK----GVAPN--CVIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 157 -~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
+. .+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...+.+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 11 2447888899999999999999999887643 11111 2456667777888999999998887765
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.82 E-value=5.3e-07 Score=58.13 Aligned_cols=99 Identities=11% Similarity=-0.012 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
+...+..+...+.+.|++++|...|++..+... .+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 457888899999999999999999999988743 367889999999999999999999999998873 345778899999
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 036731 206 SFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~ 226 (259)
++...|++++|...+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999998865
No 150
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.82 E-value=2.4e-07 Score=59.83 Aligned_cols=119 Identities=8% Similarity=0.024 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCc----HHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGV--APN----CVI 199 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~p~----~~~ 199 (259)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 35778889999999999999999999998874 33677888899999999999999999999887521 122 677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcc
Q 036731 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247 (259)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 247 (259)
+..+...+...|++++|.+.+++..+.. |+......+..+....++
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999998763 466666666665555443
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.81 E-value=1.3e-07 Score=69.40 Aligned_cols=190 Identities=8% Similarity=-0.080 Sum_probs=135.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhhHHHH-------HHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-------------
Q 036731 63 YANDGNEAEYLFIEMMDRGLQSDVVTFNVI-------MDELCKNRKMDEATRLLDLMIQGGVRPDAF------------- 122 (259)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------- 122 (259)
..++...|.+.|.++.+.... ....|..+ ...+.+.++..+++..+.+-.. +.|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 579999999999999987433 45667666 4555555555555554444333 222211
Q ss_pred ---cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc--H
Q 036731 123 ---CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN--C 197 (259)
Q Consensus 123 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~ 197 (259)
...-......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 00113455667888999999999999999887654 443355556668889999999999998554431 121 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCcc--chHHHHHHHHHHHHhcccCCcchhhhcc
Q 036731 198 VIFTTLMPSFIRKNETSKVIELLRSMDKRNVMP--YASILSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
..+..+..++.+.|++++|...|++.......| ..........++.+.|+.++|...|+++
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467788899999999999999999998543324 3456677888999999999999999864
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.81 E-value=5.9e-07 Score=56.75 Aligned_cols=100 Identities=13% Similarity=0.018 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
++..+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 45678889999999999999999999998763 44678888899999999999999999999988743 36778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC
Q 036731 95 ELCKNRKMDEATRLLDLMIQGG 116 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~ 116 (259)
++...|++++|...+++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999988753
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=8.1e-07 Score=56.10 Aligned_cols=111 Identities=9% Similarity=-0.054 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
....+..+...+...|++++|...+++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 457888899999999999999999999988642 367788889999999999999999999998773 346788889999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHH
Q 036731 206 SFIRKNETSKVIELLRSMDKRNVMPYASILSIIV 239 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 239 (259)
++...|++++|.+.+++..+.+. .+...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 99999999999999999987642 2344444433
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=4.5e-07 Score=58.47 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=44.8
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHH
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGC 132 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (259)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+.. |+ +...|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~-----~~~~~~~ 77 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PN-----FVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-----cHHHHHH
Confidence 34444444555555555555555554442 1134444445555555555555555555444432 21 2344444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 036731 133 LIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
+..++...|++++|...|++..+
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHH
Confidence 55555555555555555554443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=2.4e-07 Score=60.07 Aligned_cols=110 Identities=10% Similarity=0.105 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCc----HHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG--VAPN----CVI 199 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~----~~~ 199 (259)
....+..+...+.+.|++++|+..|++..+... -+...|..+..+|...|++++|+..+++..+.. ..++ ..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 346788899999999999999999999988753 367789999999999999999999999987641 1111 246
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHH
Q 036731 200 FTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238 (259)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (259)
|..+..++...|++++|.+.|++.++. .|+..+...+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 777888899999999999999998865 4565555443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.76 E-value=3.4e-07 Score=60.54 Aligned_cols=99 Identities=8% Similarity=-0.158 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+....... .+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 44566677788999999999999999998763 44778889999999999999999999999998753 36778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 036731 95 ELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~ 115 (259)
++...|++++|...|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.75 E-value=6.8e-07 Score=58.42 Aligned_cols=101 Identities=12% Similarity=-0.028 Sum_probs=89.0
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 036731 13 KPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92 (259)
Q Consensus 13 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (259)
..++..|..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...++...+... .+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 3578889999999999999999999999998764 44678899999999999999999999999998753 367889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 036731 93 MDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.74 E-value=2e-07 Score=62.54 Aligned_cols=139 Identities=8% Similarity=-0.025 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-Cc----hHhHHHHHHHHhhcCChhHHHHHHHHHHHcC----CCC-c
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN-PN----VVTYNSLIHGFCYANDGNEAEYLFIEMMDRG----LQS-D 85 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 85 (259)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.. ..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456778888888899999999998887653100 11 1467777888888899999988888776431 111 1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
...+..+..++...|++++|...+++..+....... ......++..+...+...|++++|...+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345667777888888888888888776543111100 011345677777777888888888887777654
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.74 E-value=8.4e-07 Score=60.11 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 036731 125 INIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLM 204 (259)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 204 (259)
.+...+..+...+...|++++|...|++..+... -+...|..+..++...|++++|...+++..+.. +-+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3678899999999999999999999999988743 267789999999999999999999999998874 34578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC
Q 036731 205 PSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
.++...|++++|...|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999988653
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.74 E-value=3.7e-07 Score=60.33 Aligned_cols=99 Identities=8% Similarity=-0.097 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
+...+..+...+.+.|++++|...|++...... .+...|..+..++...|++++|...|++..... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 567778888999999999999999999988753 367788889999999999999999999998874 345677888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 036731 206 SFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~ 226 (259)
++...|++++|.+.+++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.74 E-value=4.7e-07 Score=61.38 Aligned_cols=101 Identities=9% Similarity=-0.039 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
.+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..+++..+... .+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 356788899999999999999999999998863 34778899999999999999999999999998753 3678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC
Q 036731 94 DELCKNRKMDEATRLLDLMIQGG 116 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~ 116 (259)
.+|...|++++|...|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999988753
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=2.9e-07 Score=57.65 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP--NCVIFTTL 203 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l 203 (259)
+...+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 446788889999999999999999999988643 366788889999999999999999999998773 33 57888899
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhCCC
Q 036731 204 MPSFIRK-NETSKVIELLRSMDKRNV 228 (259)
Q Consensus 204 ~~~~~~~-~~~~~a~~~~~~~~~~~~ 228 (259)
...+... |++++|.+.+++..+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999 999999999999987643
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.3e-06 Score=57.75 Aligned_cols=100 Identities=16% Similarity=0.042 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc----hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN----VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF 89 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (259)
.+...+..+...+.+.|++++|.+.|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 46788999999999999999999999999876 455 6788888999999999999999999998874 3367788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 036731 90 NVIMDELCKNRKMDEATRLLDLMIQGG 116 (259)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 116 (259)
..+..++...|++++|...|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 889999999999999999999998753
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=5.2e-07 Score=58.97 Aligned_cols=118 Identities=11% Similarity=-0.122 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
+...+..+...+...|++++|...|+....... .+...|..+..++...|++++|...+++..... +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 568899999999999999999999999988753 367789999999999999999999999998874 346788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC----CccchHHHHHHHHHHHHh
Q 036731 206 SFIRKNETSKVIELLRSMDKRN----VMPYASILSIIVDLLVKN 245 (259)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 245 (259)
++...|++++|...+++..+.. ...+......+..+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987542 122455555555544443
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=4e-07 Score=56.99 Aligned_cols=96 Identities=17% Similarity=0.032 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHH
Q 036731 54 YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCL 133 (259)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (259)
+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+..... .+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~l 82 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE-----YNKDVWAAK 82 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT-----TCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-----chHHHHHHH
Confidence 33344444444444444444444443321 133344444444444444444444444444332110 012344444
Q ss_pred HHHHHhc-CChHHHHHHHHHHHH
Q 036731 134 IDGLCKI-GKLKNARELSQSLTR 155 (259)
Q Consensus 134 ~~~~~~~-~~~~~a~~~~~~~~~ 155 (259)
..++... |++++|.+.++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 4444444 444444444444443
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.71 E-value=4.9e-07 Score=71.21 Aligned_cols=198 Identities=9% Similarity=-0.038 Sum_probs=137.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHHcCCCCc----------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 036731 58 IHGFCYANDGNEAEYLFIEMMDRGLQSD----------------VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA 121 (259)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 121 (259)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+.++...-.....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3556788999999999999987532211 123677899999999999999999887642111110
Q ss_pred ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhc--CC-
Q 036731 122 FCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA----GLMPN-VVTYNITIHALCNDEQMDKAHDLFLDMEVK--GV- 193 (259)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~- 193 (259)
......+.+.+...+...|++++|..+++..... +..+. ..++..+...+...|++++|..+++++... +.
T Consensus 91 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 -SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp -HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred -hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 0001123444445555678999999999887542 22222 456788899999999999999999987643 11
Q ss_pred -CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCcc--chHHHHHHHHHHHHhcccCCcchhhh
Q 036731 194 -AP-NCVIFTTLMPSFIRKNETSKVIELLRSMDKR----NVMP--YASILSIIVDLLVKNEISLNSIPQFN 256 (259)
Q Consensus 194 -~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 256 (259)
.+ ...++..++..|...|++++|..++++.... +.++ ....+..+...+...|++++|...|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 12 2457888899999999999999999887642 2121 13455666667777788888776654
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.70 E-value=3.3e-07 Score=59.13 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGL--MPN---- 161 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~---- 161 (259)
.+..+...+...|++++|...+++..+.. |+ +...+..+..++...|++++|...+++...... .++
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PT-----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 34444455555555555555555554432 11 234455555555555555555555555444321 011
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
..++..+..++...|++++|...|+...+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334555555555556666666665555544
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.69 E-value=2.2e-05 Score=59.55 Aligned_cols=213 Identities=11% Similarity=-0.004 Sum_probs=153.2
Q ss_pred CHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhc-C-ChhHHHHHHHHHHHcCCCCchhhHHH
Q 036731 15 NTVTYNTIIDGLCKEG-FVDKAKELFLQMKDENINPNVVTYNSLIHGFCYA-N-DGNEAEYLFIEMMDRGLQSDVVTFNV 91 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (259)
+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+... + ++++++++++.+.+...+ |...|+.
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~ 164 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAY 164 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 5566787777777788 5999999999999874 44777888777777666 6 899999999999987543 7778877
Q ss_pred HHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHc
Q 036731 92 IMDELCKNRKMD--------EATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK-------LKNARELSQSLTRA 156 (259)
Q Consensus 92 l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 156 (259)
-..++.+.|.++ ++++.++++.+.... |..+|+.....+.+.++ ++++++.+++....
T Consensus 165 R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-------N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 165 LHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-------NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 666666666555 899999999886543 55889888888888776 68899999888877
Q ss_pred CCCCChhhHHHHHHHHHhcCCh--------------------hHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHhcC
Q 036731 157 GLMPNVVTYNITIHALCNDEQM--------------------DKAHDLFLDMEVKG-----VAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~ 211 (259)
... |...|+.+-..+.+.|+. ........++...+ -.++......++..|...|
T Consensus 238 ~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~ 316 (349)
T 3q7a_A 238 IPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQN 316 (349)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTT
T ss_pred CCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcC
Confidence 543 777887776666666654 22333333333221 1367788899999999999
Q ss_pred CHHHHHHHHHHHhhCCCccchHHHHH
Q 036731 212 ETSKVIELLRSMDKRNVMPYASILSI 237 (259)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (259)
+.++|.++++.+.+.--+....-|..
T Consensus 317 ~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 317 RVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 99999999999875422334444443
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=2e-06 Score=56.75 Aligned_cols=98 Identities=15% Similarity=0.025 Sum_probs=64.7
Q ss_pred chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccch
Q 036731 50 NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD----VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125 (259)
Q Consensus 50 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (259)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+.. |+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----- 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GG----- 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SC-----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--cc-----
Confidence 4556666667777777777777777777665 233 4566666667777777777777777666542 22
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
+...+..+..++...|++++|...|++..+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3456666677777777777777777776654
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.66 E-value=3.9e-07 Score=61.10 Aligned_cols=138 Identities=7% Similarity=-0.076 Sum_probs=79.8
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC-Cc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccch
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ-SD----VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI 125 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (259)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++.......... ...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cHH
Confidence 345667777888888888888888877653111 11 136667777888888888888888776542111100 011
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRA----GLM-PNVVTYNITIHALCNDEQMDKAHDLFLDME 189 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (259)
....+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|...+++..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2356666777777777777777777665432 100 012233444444445555555555554433
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.63 E-value=8.9e-08 Score=76.61 Aligned_cols=126 Identities=10% Similarity=-0.062 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
..+..+...+.+.|++++|...+++..+... .+...|..+..++.+.|++++|...+++..+.. +-+...+..+..+|
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 84 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444555667789999999999999988742 257889999999999999999999999999873 34678899999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHH--HHHhcccCCcchhhh
Q 036731 208 IRKNETSKVIELLRSMDKRNVMPYASILSIIVDL--LVKNEISLNSIPQFN 256 (259)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 256 (259)
...|++++|.+.+++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999887642 233455555555 888999999999887
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.60 E-value=1.1e-06 Score=56.42 Aligned_cols=98 Identities=9% Similarity=-0.064 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..+
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~ 94 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 94 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3456667788999999999999999998863 447888899999999999999999999999987433 67788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 036731 96 LCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~ 115 (259)
+...|++++|...+++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.60 E-value=1.1e-06 Score=69.97 Aligned_cols=143 Identities=8% Similarity=-0.039 Sum_probs=109.4
Q ss_pred CCccccccccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc---------------hHhHHHHHHHHhhc
Q 036731 3 NGNREFGVVCK--P-NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN---------------VVTYNSLIHGFCYA 64 (259)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~ 64 (259)
.|...++..+. | ....|..+...+.+.|++++|...|++..+.. +.+ ...|..+..++.+.
T Consensus 252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444544432 2 35578888899999999999999999998752 112 47888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChH
Q 036731 65 NDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLK 144 (259)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (259)
|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+. .|+ +..++..+..++.+.++.+
T Consensus 331 g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~-----~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQ-----NKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C---------CHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHHHHHH
Confidence 999999999999998743 36788889999999999999999999999875 343 4578888888898888888
Q ss_pred HHHH-HHHHHH
Q 036731 145 NARE-LSQSLT 154 (259)
Q Consensus 145 ~a~~-~~~~~~ 154 (259)
++.. .++.|.
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 7664 444443
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=2.9e-05 Score=58.59 Aligned_cols=200 Identities=10% Similarity=-0.000 Sum_probs=134.9
Q ss_pred HHHHHHHHHHH---HhcCChH-HHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCC----------hhHHHHHHHHHHHcC
Q 036731 16 TVTYNTIIDGL---CKEGFVD-KAKELFLQMKDENINPNVVTYNSLIHGFCYAND----------GNEAEYLFIEMMDRG 81 (259)
Q Consensus 16 ~~~~~~ll~~~---~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~ 81 (259)
+..|..+.... .+.|.+. +|+++++.+...+ +-+..+|+.--......+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 34455554433 4566664 7899999888763 2244455544333333332 577888888888764
Q ss_pred CCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCC
Q 036731 82 LQSDVVTFNVIMDELCKNR--KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK-LKNARELSQSLTRAGL 158 (259)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~ 158 (259)
.+ +..+|+.-..++...+ .+++++.+++++.+.... +-.+|+.-.-+....|. +++++..++.+.+..+
T Consensus 105 PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 105 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp TT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred CC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 43 7778888777777777 478999999998875433 45788877777778887 5889999998888765
Q ss_pred CCChhhHHHHHHHHHhc--------------CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-----------CCH
Q 036731 159 MPNVVTYNITIHALCND--------------EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK-----------NET 213 (259)
Q Consensus 159 ~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~ 213 (259)
. |...|+.....+... +.++++++.+.+..... +-|...|+.+-..+.+. +.+
T Consensus 177 ~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 177 S-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp C-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 4 677777666555544 45678888888887763 34566666554444444 356
Q ss_pred HHHHHHHHHHhhC
Q 036731 214 SKVIELLRSMDKR 226 (259)
Q Consensus 214 ~~a~~~~~~~~~~ 226 (259)
+++.+.++++.+.
T Consensus 255 ~~el~~~~elle~ 267 (331)
T 3dss_A 255 QSELESCKELQEL 267 (331)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7888888888865
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=1.1e-06 Score=56.42 Aligned_cols=94 Identities=12% Similarity=-0.066 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 036731 89 FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT 168 (259)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (259)
+..+...+.+.|++++|...|++..+. .|+ +...|..+..++...|++++|+..|++..+.... +...+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~l 91 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAAL 91 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 334445555566666666666555543 222 3355555555566666666666666555554321 34455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 036731 169 IHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~ 190 (259)
..++...|++++|...+++..+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555556666555555554
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.58 E-value=1.3e-07 Score=75.57 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=38.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHH
Q 036731 26 LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105 (259)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 105 (259)
+.+.|++++|.+.|++..+.. +.+..+|..+..++.+.|++++|+..+++..+... .+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 334444555555554444431 22344444444444444444444444444444321 1334444444444444444444
Q ss_pred HHHHHHHHh
Q 036731 106 TRLLDLMIQ 114 (259)
Q Consensus 106 ~~~~~~~~~ 114 (259)
.+.|++..+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.57 E-value=4.1e-06 Score=53.98 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---HHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV---VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN---CVIFTT 202 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ 202 (259)
.+..+...+...|++++|...|+...+.... +. ..+..+..++...|++++|...+++..... +.+ ...+..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 3456678889999999999999999886422 23 477788889999999999999999998763 222 567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 203 LMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
+..++...|++++|...++++.+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8899999999999999999998763
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=7.1e-06 Score=52.80 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=41.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHH
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN---VVTYNIT 168 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 168 (259)
+...+...|++++|...|+++.+.. |+. ......+..+..++...|++++|...+++..+.... + ...+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNG--VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 3344444555555555555444321 110 001134444444555555555555555554443211 1 2334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc
Q 036731 169 IHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
..++...|++++|...|+++...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555555555555555555443
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.55 E-value=2.6e-06 Score=67.83 Aligned_cols=124 Identities=7% Similarity=-0.075 Sum_probs=72.2
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCc--------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSD--------------VVTFNVIMDELCKNRKMDEATRLLDLMIQGG 116 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 116 (259)
...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566677777778888888888877776422211 3555566666666666666666666665532
Q ss_pred CCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 036731 117 VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (259)
|+ +...|..+..+|...|++++|...|++..+... -+...+..+..++...++.+++.
T Consensus 348 --p~-----~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 --SA-----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred --Cc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 22 345666666666666666666666666655432 13445555555555555555444
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.54 E-value=3e-06 Score=57.20 Aligned_cols=120 Identities=12% Similarity=0.013 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------C---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRA--------G---------LMPNVVTYNITIHALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 188 (259)
....+......+.+.|++++|...|++.... . -+.+...|..+..++.+.|++++|...++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3467888889999999999999999998764 1 0113457888899999999999999999999
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchH-H-HHHHHHHHHHhccc
Q 036731 189 EVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYAS-I-LSIIVDLLVKNEIS 248 (259)
Q Consensus 189 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~~g~~ 248 (259)
.... +.+...|..+..++...|++++|...+++..+.. |+.. . ...+..+..+.+..
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence 8873 4467889999999999999999999999998764 4433 3 44444444444333
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=2.2e-06 Score=53.63 Aligned_cols=96 Identities=7% Similarity=-0.023 Sum_probs=72.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccc------hHH
Q 036731 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY------ASI 234 (259)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 234 (259)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.... + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 34566667777778888888888888877663 335677888888888888999998888888865322 2 566
Q ss_pred HHHHHHHHHHhcccCCcchhhhcc
Q 036731 235 LSIIVDLLVKNEISLNSIPQFNRQ 258 (259)
Q Consensus 235 ~~~l~~~~~~~g~~~~a~~~~~~~ 258 (259)
+..+..++...|+.++|++.|+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 777888888999999998888764
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.50 E-value=4.5e-07 Score=57.76 Aligned_cols=87 Identities=13% Similarity=0.016 Sum_probs=70.4
Q ss_pred hcCChHHHHHHHHHHhhCC--CCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHH
Q 036731 28 KEGFVDKAKELFLQMKDEN--INPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105 (259)
Q Consensus 28 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 105 (259)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+.... +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998764 2335677888999999999999999999999987533 577888899999999999999
Q ss_pred HHHHHHHHhC
Q 036731 106 TRLLDLMIQG 115 (259)
Q Consensus 106 ~~~~~~~~~~ 115 (259)
...+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.46 E-value=4.1e-06 Score=64.74 Aligned_cols=125 Identities=12% Similarity=-0.015 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC---------------CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDE---------------NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
...|..+...+.+.|++++|+..|++..+. --+.+...|..+..++.+.|++++|+..+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 345778888999999999999999998761 11234677888899999999999999999999986
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHH
Q 036731 81 GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARE 148 (259)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (259)
.. .+...+..+..+|...|++++|+..|++..+.. |+ +...+..+..++...++.+++.+
T Consensus 303 ~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~-----~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PE-----DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 367788899999999999999999999988753 43 45677777777777777766654
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=9.8e-07 Score=56.15 Aligned_cols=86 Identities=10% Similarity=0.036 Sum_probs=55.6
Q ss_pred cCChhHHHHHHHHHHHcC--CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC
Q 036731 64 ANDGNEAEYLFIEMMDRG--LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141 (259)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (259)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|+..|++..+.. |+ +..++..+..++...|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-----~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PN-----HQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----chHHHHHHHHHHHHcC
Confidence 467777777777777653 12245566677777777777777777777776642 33 3466777777777777
Q ss_pred ChHHHHHHHHHHHHc
Q 036731 142 KLKNARELSQSLTRA 156 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~ 156 (259)
++++|...+++....
T Consensus 76 ~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 76 RYEQGVELLLKIIAE 90 (117)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777776654
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=8e-06 Score=55.07 Aligned_cols=107 Identities=18% Similarity=0.126 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCCc-----cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQGG------VRPDAF-----CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
.+......+.+.|++++|+..|.+....- ..|... .+.+..+|..+..+|.+.|++++|...++...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34445555555666666655555554320 001000 0114578999999999999999999999999887
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH
Q 036731 157 GLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC 197 (259)
Q Consensus 157 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 197 (259)
.. .+...|..+..++...|++++|...|++.... .|+.
T Consensus 93 ~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 93 EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 53 36778999999999999999999999999887 4543
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.45 E-value=5.3e-06 Score=64.11 Aligned_cols=87 Identities=8% Similarity=-0.055 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
.+|..+..+|.+.|++++|...+++..+... .+...|..+..++...|++++|...|++..+.. +-+...+..+...+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4445555555555555555555555544321 133444444555555555555555555544431 11333444444444
Q ss_pred HhcCCHHHH
Q 036731 208 IRKNETSKV 216 (259)
Q Consensus 208 ~~~~~~~~a 216 (259)
...++.+++
T Consensus 352 ~~~~~~~~a 360 (370)
T 1ihg_A 352 QKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.42 E-value=4.4e-05 Score=62.37 Aligned_cols=174 Identities=10% Similarity=-0.036 Sum_probs=134.5
Q ss_pred ChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHH
Q 036731 66 DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK----------MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135 (259)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (259)
..++|++.++.+...... +..+|+.--.++...|+ +++++..++.+.+... . +..+|+.-.-
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K-----~y~aW~hR~w 115 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--K-----SYGTWHHRCW 115 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--T-----CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--C-----CHHHHHHHHH
Confidence 345678888888877433 56667766666666666 8999999999987643 3 5588999888
Q ss_pred HHHhcC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc--
Q 036731 136 GLCKIG--KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE-QMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK-- 210 (259)
Q Consensus 136 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-- 210 (259)
++.+.+ ++++++..++++.+...+ +...|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcc
Confidence 999999 779999999999998655 7788888877888888 8899999999998774 34677787776666553
Q ss_pred ------------CCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCC
Q 036731 211 ------------NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLN 250 (259)
Q Consensus 211 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 250 (259)
+.++++.+.+.+.+... +-+...|.-....+.+.++.++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999988764 3367788877777877777655
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.41 E-value=6.4e-06 Score=65.83 Aligned_cols=143 Identities=9% Similarity=-0.008 Sum_probs=103.1
Q ss_pred cccCCHHHHHHHHH----------HHHhcCChHHHHHHHHHHhhC-----C--CCCchHhHHHHHHHHhhcCChhHHHHH
Q 036731 11 VCKPNTVTYNTIID----------GLCKEGFVDKAKELFLQMKDE-----N--INPNVVTYNSLIHGFCYANDGNEAEYL 73 (259)
Q Consensus 11 ~~~~~~~~~~~ll~----------~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 73 (259)
+++|+..++..++. .+...|++++|+.++++..+. | .+....+++.|...|...|++++|..+
T Consensus 294 ~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~ 373 (490)
T 3n71_A 294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHY 373 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34566665554432 355789999999999887643 1 111356789999999999999999999
Q ss_pred HHHHHHc-----CC-CC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCCccchhHHHHHHHHHHHHhcCCh
Q 036731 74 FIEMMDR-----GL-QS-DVVTFNVIMDELCKNRKMDEATRLLDLMIQ---GGVRPDAFCEINIVAYGCLIDGLCKIGKL 143 (259)
Q Consensus 74 ~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (259)
+++..+. |. .| ...+++.|...|...|++++|+.++++... .-..|+. +....+.+.+-.++...+.+
T Consensus 374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H--p~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH--PITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHH
Confidence 9987642 21 12 356789999999999999999999987653 2223332 22345666777778888889
Q ss_pred HHHHHHHHHHHH
Q 036731 144 KNARELSQSLTR 155 (259)
Q Consensus 144 ~~a~~~~~~~~~ 155 (259)
++|+.++..+.+
T Consensus 452 ~~ae~~~~~~~~ 463 (490)
T 3n71_A 452 RQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988865
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.40 E-value=4.1e-06 Score=66.94 Aligned_cols=130 Identities=10% Similarity=0.007 Sum_probs=94.5
Q ss_pred HHhhcCChhHHHHHHHHHHHcC---CCC----chhhHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCCccchhHHH
Q 036731 60 GFCYANDGNEAEYLFIEMMDRG---LQS----DVVTFNVIMDELCKNRKMDEATRLLDLMIQG---GVRPDAFCEINIVA 129 (259)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 129 (259)
.+...|++++|+.++++..+.. +-| ...+++.|..+|...|++++|..++++.... -..++. +....+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H--p~~a~~ 395 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN--AQLGMA 395 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC--HHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC--HHHHHH
Confidence 3567899999999998887431 112 3567899999999999999999999887532 223331 235678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 130 YGCLIDGLCKIGKLKNARELSQSLTRA-----GLM-P-NVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
++.|...|...|++++|+.++++..+. |.. | ...+...+-.++...+.+++|+.+++.+++.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887542 321 1 1234455666677778888888888887653
No 190
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.40 E-value=0.00016 Score=58.15 Aligned_cols=207 Identities=6% Similarity=-0.057 Sum_probs=133.9
Q ss_pred HHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036731 33 DKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLM 112 (259)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 112 (259)
+.+..+|+++... .+.+...|...+..+.+.|+.+.|..++++.... +.+...|. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 4567889988875 3556788888888889999999999999999987 33333332 23222222222 3333
Q ss_pred HhCCCCCC------CccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChhHHHHHH
Q 036731 113 IQGGVRPD------AFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN-DEQMDKAHDLF 185 (259)
Q Consensus 113 ~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~ 185 (259)
.+.-.... ........+|...+....+.++.+.|..+|+.. .. ...+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 22110000 001113467888888888889999999999998 32 12233444433322222 33699999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 186 LDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 186 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+...+.- +-++..+...++.....|+.+.|..+|+++. .....|...++.=...|+.+.+.+++++
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9988762 2234556667887888999999999999873 2456777777766677777666665554
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.40 E-value=2.1e-06 Score=65.58 Aligned_cols=149 Identities=11% Similarity=0.009 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDE 95 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 344666666677777777777777776654 233221 11222222222111 11367778888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHh
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHA-LCN 174 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~ 174 (259)
|.+.|++++|+..+++..+.. |+ +...|..+..+|...|++++|...|++..+.... +...+..+... ...
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~--p~-----~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE--EK-----NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQE 311 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 888888888888888877643 33 4578888888888888888888888887654321 33444444444 233
Q ss_pred cCChhHHHHHHHHHHhc
Q 036731 175 DEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~ 191 (259)
.+..+.+...|..+...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 45667777788777654
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.39 E-value=2e-06 Score=65.70 Aligned_cols=147 Identities=16% Similarity=-0.010 Sum_probs=82.5
Q ss_pred HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHH
Q 036731 52 VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYG 131 (259)
Q Consensus 52 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (259)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------------~~~~~ 234 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------------NPCHL 234 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------------THHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------------HHHHH
Confidence 34556666777788888888888877665 233221 11223333332221 1 15889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-HHHHHHHHHH-HHh
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN-CVIFTTLMPS-FIR 209 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~ 209 (259)
.+..+|.+.|++++|...+++..+... .+...|..+..++...|++++|...|++..+. .|+ ...+..+... ...
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988642 36778999999999999999999999998765 343 4445555544 234
Q ss_pred cCCHHHHHHHHHHHhhC
Q 036731 210 KNETSKVIELLRSMDKR 226 (259)
Q Consensus 210 ~~~~~~a~~~~~~~~~~ 226 (259)
.+..+.+...+..|...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 56778888899988765
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.31 E-value=3e-05 Score=51.69 Aligned_cols=97 Identities=16% Similarity=0.042 Sum_probs=69.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHcCCCC-----------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCC
Q 036731 55 NSLIHGFCYANDGNEAEYLFIEMMDRGLQS-----------DVVTFNVIMDELCKNRKMDEATRLLDLMIQG-----GVR 118 (259)
Q Consensus 55 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~ 118 (259)
......+.+.|++++|+..|++..+..... +...|..+..++.+.|++++|+..+++..+. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444555556666666665555432110 1237888888999999999999999888764 124
Q ss_pred CCCccchhHHHH----HHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 119 PDAFCEINIVAY----GCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 119 ~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
|+ +...| .....++...|++++|+..|++..+.
T Consensus 95 pd-----~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QD-----EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp ST-----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cc-----hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 54 66788 99999999999999999999998764
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.30 E-value=2.5e-05 Score=52.02 Aligned_cols=98 Identities=10% Similarity=-0.093 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCc--------h-----HhHHHHHHHHhhcCChhHHHHHHHHHHHc--
Q 036731 16 TVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPN--------V-----VTYNSLIHGFCYANDGNEAEYLFIEMMDR-- 80 (259)
Q Consensus 16 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 80 (259)
...+......+.+.|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 345667778889999999999999999875 233 2 28899999999999999999999999875
Q ss_pred ---CCCC-chhhH----HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 036731 81 ---GLQS-DVVTF----NVIMDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 81 ---~~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
.+.| +...| .....++...|++++|+..|++..+.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1234 46677 88999999999999999999998753
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.30 E-value=3.9e-05 Score=50.26 Aligned_cols=112 Identities=10% Similarity=-0.083 Sum_probs=92.5
Q ss_pred CChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH----cCCHHHH
Q 036731 30 GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK----NRKMDEA 105 (259)
Q Consensus 30 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 105 (259)
+++++|.++|++..+.| .|+. . +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46889999999999887 2233 3 7777777788899999999998875 66778888888888 8899999
Q ss_pred HHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 036731 106 TRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK----IGKLKNARELSQSLTRAGL 158 (259)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 158 (259)
.+.|++..+.|. +..+..+...|.. .++.++|...|++..+.|.
T Consensus 81 ~~~~~~Aa~~g~---------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLND---------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCC---------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988753 3788888888888 8899999999999888763
No 196
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.00057 Score=51.62 Aligned_cols=197 Identities=9% Similarity=0.004 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC--ChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC-HHHHHHH
Q 036731 32 VDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN--DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK-MDEATRL 108 (259)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 108 (259)
+++++.+++.+.... +-+..+|+.-.-.+...+ ++++++.+++.+.+.... |...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 678899999988764 447788887777777777 489999999999988544 78888888888888888 5899999
Q ss_pred HHHHHhCCCCCCCccchhHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036731 109 LDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI--------------GKLKNARELSQSLTRAGLMPNVVTYNITIHALCN 174 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 174 (259)
++++.+.... |..+|+.....+... +.++++++.+.......+. |...|+-+-..+.+
T Consensus 168 ~~~~I~~~p~-------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 168 TDSLITRNFS-------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHCSC-------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHS
T ss_pred HHHHHHHCCC-------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 9999886543 557888777776665 4578899999988876533 67777655444444
Q ss_pred c-----------CChhHHHHHHHHHHhcCCCCcHHHHHHHH-----HHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHH
Q 036731 175 D-----------EQMDKAHDLFLDMEVKGVAPNCVIFTTLM-----PSFIRKNETSKVIELLRSMDKRNVMPYASILSII 238 (259)
Q Consensus 175 ~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (259)
. +.++++++.++++.+. .|+. .|..+. ......+..+++...+.++++.+ +....-|..+
T Consensus 240 ~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~ 315 (331)
T 3dss_A 240 GSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDL 315 (331)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHH
Confidence 4 3577888999998876 5654 333221 12224677888999999998764 2344455555
Q ss_pred HHHH
Q 036731 239 VDLL 242 (259)
Q Consensus 239 ~~~~ 242 (259)
...+
T Consensus 316 ~~~~ 319 (331)
T 3dss_A 316 RSKF 319 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.26 E-value=0.00021 Score=58.35 Aligned_cols=187 Identities=10% Similarity=-0.010 Sum_probs=140.5
Q ss_pred HHHHHHHHH---HHhcCC-hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCC----------hhHHHHHHHHHHHcCC
Q 036731 17 VTYNTIIDG---LCKEGF-VDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND----------GNEAEYLFIEMMDRGL 82 (259)
Q Consensus 17 ~~~~~ll~~---~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~ 82 (259)
..|..+... ..+.|. .++|++.++.+...+ +-+..+|+.--.++...|+ ++++++.++.+.+...
T Consensus 26 ~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 26 KLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 445544333 334454 468899999998874 3356677776666666666 8999999999998754
Q ss_pred CCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCC
Q 036731 83 QSDVVTFNVIMDELCKNR--KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG-KLKNARELSQSLTRAGLM 159 (259)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~ 159 (259)
+ +..+|+.-..++.+.+ +++++++.++++.+.+.. +..+|+.-..+..+.| .++++++.++++.+..+.
T Consensus 105 K-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 105 K-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp T-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred C-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 4 7888998888888999 779999999999986543 5588988888888888 899999999999887654
Q ss_pred CChhhHHHHHHHHHhc--------------CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 036731 160 PNVVTYNITIHALCND--------------EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETS 214 (259)
Q Consensus 160 ~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 214 (259)
+...|+.....+.+. +.++++.+.+.+..... +-|...|..+-..+.+.++.+
T Consensus 177 -n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 177 -NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp -CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred -CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 777888777776653 45788999998888763 335667777777776666643
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.26 E-value=5.8e-05 Score=49.46 Aligned_cols=113 Identities=5% Similarity=-0.128 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 036731 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCN----D 175 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 175 (259)
+++++|++.|++..+.|.. ... +...|...+.+++|...|++..+.| +...+..+...|.. .
T Consensus 9 ~d~~~A~~~~~~aa~~g~~---------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM---------FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT---------THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHcCCCH---------hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCC
Confidence 4678999999999887732 233 7777778888999999999998875 66778888888887 8
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCc
Q 036731 176 EQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR----KNETSKVIELLRSMDKRNVM 229 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 229 (259)
+++++|..+|++..+.| +...+..|...|.. .+++++|.+++++..+.|..
T Consensus 75 ~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 89999999999999876 56778888888888 89999999999999888743
No 199
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.17 E-value=0.0007 Score=54.40 Aligned_cols=188 Identities=10% Similarity=-0.010 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC------------C
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG------------L 82 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------------~ 82 (259)
+...|-..+..+.+.|+++.|..++++.... +.+...|.. |+...+.++. ++.+.+.- .
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcc
Confidence 5677888888889999999999999999987 444433332 2222222222 33332210 0
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCC
Q 036731 83 QSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK-IGKLKNARELSQSLTRAGLMPN 161 (259)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 161 (259)
......|...+....+.++.+.|..+|++. +. |.. +..+|......-.. .++.+.|..+|+...+.- +-+
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~~----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~ 353 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN---EGV----GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDS 353 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SCC----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CCC----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCC
Confidence 112345777777777888899999999988 32 211 22444433332222 337999999999988753 223
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 162 VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 162 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
...+...+......|+.+.|..+|+.+. .....|...+..-...|+.+.+.+++++..+
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456667777788999999999999973 2577888888888888999999998888763
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.10 E-value=6.7e-05 Score=44.72 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45678888888899999999999999888763 34667788888889999999999999998887642 24556666666
Q ss_pred HHHHc
Q 036731 95 ELCKN 99 (259)
Q Consensus 95 ~~~~~ 99 (259)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=4.3e-05 Score=47.52 Aligned_cols=65 Identities=9% Similarity=-0.004 Sum_probs=38.5
Q ss_pred chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 036731 50 NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 50 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455555566666666666666666665542 224555666666666666666666666666553
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.07 E-value=3.4e-05 Score=48.61 Aligned_cols=80 Identities=11% Similarity=0.020 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036731 34 KAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI 113 (259)
Q Consensus 34 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (259)
.|...|++..+.. +.+...+..+...+...|++++|...+++..+... .+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777776653 34567777888888888888888888888887642 356677788888888888888888888776
Q ss_pred hC
Q 036731 114 QG 115 (259)
Q Consensus 114 ~~ 115 (259)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.05 E-value=0.00015 Score=43.16 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 127 IVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
...+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555566666666666666666666655421 13445555555555566666666666555544
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.03 E-value=6.9e-05 Score=47.15 Aligned_cols=80 Identities=13% Similarity=0.011 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 145 NARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
.|...+++..+... .+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...+++..
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666666532 256677777778888888888888888877663 3346677777788888888888888888776
Q ss_pred hC
Q 036731 225 KR 226 (259)
Q Consensus 225 ~~ 226 (259)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.87 E-value=0.0001 Score=45.17 Aligned_cols=64 Identities=17% Similarity=0.005 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 190 (259)
+...+..+..+|...|++++|...|++..+.... +...|..+..++...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4466667777777777777777777777665322 455666666777777777777777766554
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.85 E-value=0.00011 Score=45.02 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHH
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 78 (259)
++..|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555554432 2234445555555555555555555555444
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.84 E-value=9.6e-05 Score=49.15 Aligned_cols=103 Identities=8% Similarity=0.009 Sum_probs=77.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 036731 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM----------DKAHDLFLDMEVKGVAPNCVIFTTLMPSF 207 (259)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 207 (259)
.+.+.+++|...++...+.... +...|..+..++...+++ ++|...|++..+.. +-+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4556788888888888877533 677888788888877664 48889998888773 23567788888888
Q ss_pred HhcC-----------CHHHHHHHHHHHhhCCCccchHHHHHHHHHHHH
Q 036731 208 IRKN-----------ETSKVIELLRSMDKRNVMPYASILSIIVDLLVK 244 (259)
Q Consensus 208 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (259)
...| ++++|.+.|++.++. .|+...|...+....+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 8764 899999999998876 5677777766665443
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.81 E-value=0.0011 Score=50.43 Aligned_cols=143 Identities=10% Similarity=-0.008 Sum_probs=75.5
Q ss_pred CCCchHhHHHHHHHHh--hcCC---hhHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHH---cC--C---HHHHHHHHHHH
Q 036731 47 INPNVVTYNSLIHGFC--YAND---GNEAEYLFIEMMDRGLQSD-VVTFNVIMDELCK---NR--K---MDEATRLLDLM 112 (259)
Q Consensus 47 ~~~~~~~~~~li~~~~--~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~--~---~~~a~~~~~~~ 112 (259)
.+.+...|...+++.. ..++ ..+|..+|++..+. .|+ ...|..+..+|.. .+ . .......++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3557777877776543 2333 46788899988887 343 3445444444431 00 0 01111111111
Q ss_pred HhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036731 113 IQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192 (259)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 192 (259)
......|. +..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 268 ~a~~~~~~-----~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL- 339 (372)
T 3ly7_A 268 VTLPELNN-----LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL- 339 (372)
T ss_dssp HTCGGGTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HhcccCCc-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 11112222 34556555555555566666666666666653 45555555555666666666666666666554
Q ss_pred CCCcHHHH
Q 036731 193 VAPNCVIF 200 (259)
Q Consensus 193 ~~p~~~~~ 200 (259)
.|...+|
T Consensus 340 -~P~~~t~ 346 (372)
T 3ly7_A 340 -RPGANTL 346 (372)
T ss_dssp -SCSHHHH
T ss_pred -CCCcChH
Confidence 4555544
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=8.8e-05 Score=49.34 Aligned_cols=100 Identities=8% Similarity=-0.029 Sum_probs=78.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCCChhhHH
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL----------KNARELSQSLTRAGLMPNVVTYN 166 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~ 166 (259)
.+.+.+++|.+.+++..+.. |+ +...|..+..++...+++ ++|+..|++..+.... +...|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~-----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~ 84 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PL-----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CC-----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHH
Confidence 35567899999999888753 44 568899888898888765 5999999999987533 567899
Q ss_pred HHHHHHHhcC-----------ChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 036731 167 ITIHALCNDE-----------QMDKAHDLFLDMEVKGVAPNCVIFTTLMPS 206 (259)
Q Consensus 167 ~li~~~~~~~-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 206 (259)
.+..+|...| ++++|...|++..+. .|+...|...+..
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 9999998774 899999999999987 6776666555543
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.71 E-value=0.00052 Score=58.51 Aligned_cols=188 Identities=14% Similarity=0.042 Sum_probs=111.5
Q ss_pred HHHHHhcCChHHHHH-HHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC
Q 036731 23 IDGLCKEGFVDKAKE-LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK 101 (259)
Q Consensus 23 l~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 101 (259)
.......+++++|.+ ++..+ + +......++..+.+.|.++.|+++.++- . .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCC
Confidence 445566889999877 54221 1 1223377888888999999988776321 1 12344567899
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 036731 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKA 181 (259)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 181 (259)
++.|.++.+.+ . +...|..+...+.+.++++.|.+.|..+.+ |..+...+...|+.+..
T Consensus 668 ~~~A~~~~~~~-----~-------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 668 LTLARDLLTDE-----S-------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHHHHHTTC-----C-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhh-----C-------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 99998886433 1 348999999999999999999999998753 33444444555665555
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------CCCccch----HHHHHHHHHHHHhccc-
Q 036731 182 HDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK--------RNVMPYA----SILSIIVDLLVKNEIS- 248 (259)
Q Consensus 182 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~----~~~~~l~~~~~~~g~~- 248 (259)
..+-+.....|- ++....+|.+.|++++|.+++.++.. +...|.. .+.......+...|+.
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchh
Confidence 555444444331 22223334444555555555443321 1123334 4555555566667754
Q ss_pred -CCcchhh
Q 036731 249 -LNSIPQF 255 (259)
Q Consensus 249 -~~a~~~~ 255 (259)
-+|+.-+
T Consensus 801 ~a~~l~~~ 808 (814)
T 3mkq_A 801 VSERVCGA 808 (814)
T ss_dssp HHTTBCCG
T ss_pred HHHhhCCc
Confidence 3444433
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.001 Score=52.41 Aligned_cols=94 Identities=13% Similarity=-0.002 Sum_probs=72.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC---CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----C-CCCc-H
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRAG---LMPN----VVTYNITIHALCNDEQMDKAHDLFLDMEVK-----G-VAPN-C 197 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~ 197 (259)
..+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.++++..+. | -.|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34556678899999999999987541 1222 457888999999999999999999987643 2 2333 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 198 VIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
.+++.|...|...|++++|..++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5688899999999999999999998753
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.62 E-value=0.00026 Score=55.68 Aligned_cols=87 Identities=7% Similarity=-0.072 Sum_probs=68.2
Q ss_pred hcCChHHHHHHHHHHhhC---CCCC----chHhHHHHHHHHhhcCChhHHHHHHHHHHHc-----CC-CC-chhhHHHHH
Q 036731 28 KEGFVDKAKELFLQMKDE---NINP----NVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-----GL-QS-DVVTFNVIM 93 (259)
Q Consensus 28 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 93 (259)
..|++++|+.++++..+. -+.| ...+++.|..+|...|++++|..++++..+. |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999887653 1122 2467899999999999999999999988642 21 22 246789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 036731 94 DELCKNRKMDEATRLLDLMIQ 114 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~ 114 (259)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987753
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.61 E-value=0.00051 Score=54.04 Aligned_cols=90 Identities=7% Similarity=-0.052 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHh---CCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCC-hhhHHHH
Q 036731 99 NRKMDEATRLLDLMIQ---GGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA-----GL-MPN-VVTYNIT 168 (259)
Q Consensus 99 ~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l 168 (259)
.|++++|+.++++..+ .-+.|+. .....+++.+..+|...|++++|+.++++..+. |. .|+ ..+++.|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~H--p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSN--VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhc--hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4678888888887654 2233331 224577888888888889999888888876542 21 122 3356777
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 036731 169 IHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 169 i~~~~~~~~~~~a~~~~~~~~~ 190 (259)
...|...|++++|+.++++..+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 7777777777777777776543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.60 E-value=0.0007 Score=53.31 Aligned_cols=93 Identities=10% Similarity=0.010 Sum_probs=72.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC--C-CCC----chHhHHHHHHHHhhcCChhHHHHHHHHHHHc-----C-CCC-ch
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDE--N-INP----NVVTYNSLIHGFCYANDGNEAEYLFIEMMDR-----G-LQS-DV 86 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~--~-~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~ 86 (259)
..+..+.+.|++++|+.++++..+. . +.| ...+++.+...|...|++++|+.++++.... | ..| ..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3455677889999999999998754 1 122 2467888999999999999999999987642 2 122 24
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMI 113 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (259)
.+++.|...|...|++++|+.++++..
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 578899999999999999999998765
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.60 E-value=0.0052 Score=46.86 Aligned_cols=144 Identities=12% Similarity=0.001 Sum_probs=97.0
Q ss_pred CCCchhhHHHHHHHHH--HcC---CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh---cC--ChHHHH---H
Q 036731 82 LQSDVVTFNVIMDELC--KNR---KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK---IG--KLKNAR---E 148 (259)
Q Consensus 82 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~a~---~ 148 (259)
.+.+...|...+++.. ..+ ...+|..+|++..+. .|+ ....|..+.-+|.. .+ ...... .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~-----~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPE-----FTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTT-----CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 4557788888776644 333 357899999999875 444 23455544444431 11 111111 1
Q ss_pred HHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036731 149 LSQSLTR-AGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRN 227 (259)
Q Consensus 149 ~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 227 (259)
.++.... ...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL- 339 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL- 339 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 2221111 1124567788887777777899999999999999884 88888888888999999999999999998876
Q ss_pred CccchHHHH
Q 036731 228 VMPYASILS 236 (259)
Q Consensus 228 ~~~~~~~~~ 236 (259)
.|...+|.
T Consensus 340 -~P~~~t~~ 347 (372)
T 3ly7_A 340 -RPGANTLY 347 (372)
T ss_dssp -SCSHHHHH
T ss_pred -CCCcChHH
Confidence 45666655
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.42 E-value=0.011 Score=50.50 Aligned_cols=133 Identities=12% Similarity=0.099 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELC 97 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (259)
....++..+.+.|..+.|.++.+. . ..-.......|+++.|.++.+.+ .+...|..+...+.
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al 692 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHH
Confidence 346677777888888888766531 1 11133456789999999886433 36789999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (259)
+.++++.|.+.|.++. -|..+...+...|+.+....+.+.....| -++....++.+.|+
T Consensus 693 ~~~~~~~A~~~y~~~~---------------d~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~ 751 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAH---------------DLESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGD 751 (814)
T ss_dssp HTTCHHHHHHHHHHHT---------------CHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHcc---------------ChhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCC
Confidence 9999999999999873 34555666666777777666666655543 23444455666777
Q ss_pred hhHHHHHHHHHH
Q 036731 178 MDKAHDLFLDME 189 (259)
Q Consensus 178 ~~~a~~~~~~~~ 189 (259)
+++|.+++.++.
T Consensus 752 ~~~a~~~~~~~~ 763 (814)
T 3mkq_A 752 IQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 777777776543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.35 E-value=0.0011 Score=40.17 Aligned_cols=58 Identities=16% Similarity=0.093 Sum_probs=36.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 133 LIDGLCKIGKLKNARELSQSLTRAGLMPNVV-TYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
....+...|++++|...+++..+... .+.. .+..+..++...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34556666777777777777666532 1344 5666666666777777777777766655
No 218
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.20 E-value=0.019 Score=37.50 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCChh-hHHHHHHH------HHhcCChhHHHHHHHHHHhcC
Q 036731 126 NIVAYGCLIDGLCKIGKL------KNARELSQSLTRAGLMPNVV-TYNITIHA------LCNDEQMDKAHDLFLDMEVKG 192 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~li~~------~~~~~~~~~a~~~~~~~~~~~ 192 (259)
|..+|...+...-+.|+. +...++|++.... ++|+.. .|...+.. +...++.++|.++|+.++...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 568888888888888998 8888999988765 455432 22222222 234589999999999997663
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHH
Q 036731 193 VAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242 (259)
Q Consensus 193 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (259)
-.. ...|......-.+.|+...|.+++...+..+..| ...+...++-+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 333 7778888888889999999999999999887665 44555555444
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.15 E-value=0.011 Score=35.48 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=49.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV-AYGCLIDGLCKIGKLKNARELSQSLTRAG 157 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (259)
....+...|++++|...+++..+.. |+ +.. .+..+..++...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PV-----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SS-----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567788899999999999988753 33 456 88899999999999999999999998864
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.027 Score=38.03 Aligned_cols=103 Identities=12% Similarity=0.154 Sum_probs=67.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCH
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (259)
.....+.|+++.|.++.+.+ -+...|..|.......|+++-|.+.|....+ +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 44556778888888777665 2567788888888888888888888765543 34455566667776
Q ss_pred HHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036731 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152 (259)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (259)
+...++-+..... .-++....++...|+++++.+++.+
T Consensus 77 e~L~kla~iA~~~------------g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTR------------EDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHT------------TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC------------ccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6655554444333 2355556666677777777777744
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.11 E-value=0.012 Score=36.10 Aligned_cols=67 Identities=10% Similarity=-0.042 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE------NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
.++..+-.|...+.+.|++..|...|+...+. +-.+....+..+..++.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566777888888899999999988887653 11235667788888888888888888888888876
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.031 Score=37.77 Aligned_cols=131 Identities=8% Similarity=0.054 Sum_probs=94.3
Q ss_pred HHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHH
Q 036731 58 IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137 (259)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (259)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+. .-+..+.-.|
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~---------------~D~~~L~~Ly 70 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ---------------HSFDKLSFLY 70 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT---------------TCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh---------------CCHHHHHHHH
Confidence 34456789999999987765 26788999999999999999999999876 3466677777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 036731 138 CKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217 (259)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 217 (259)
.-.|+.+.-..+-+.....| -++.....+...|+++++.++|.+.- ..|... ......|..+.|.
T Consensus 71 ~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~---r~~eA~------~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG---SLPLAY------AVAKANGDEAAAS 135 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT---CHHHHH------HHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC---ChHHHH------HHHHHcCcHHHHH
Confidence 78888887777666655544 25666667778899999999985533 222111 1122367778888
Q ss_pred HHHHHHh
Q 036731 218 ELLRSMD 224 (259)
Q Consensus 218 ~~~~~~~ 224 (259)
++..++.
T Consensus 136 ~~~~~~~ 142 (177)
T 3mkq_B 136 AFLEQAE 142 (177)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 8877653
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.06 E-value=0.01 Score=36.41 Aligned_cols=73 Identities=8% Similarity=-0.022 Sum_probs=54.7
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 84 SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
.+...+..+...+...++++.|...|+...+..............++..+..++.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3556677888889999999999999988765321110001125678899999999999999999999999875
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.03 E-value=0.019 Score=34.41 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 85 DVVTFNVIMDELCKNRK---MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 85 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
+...+..+..++...++ .++|..++++..+. .|+ ++.....+...+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~-----~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPY-----NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433332 35555555555543 222 3455555555555555555555555555544
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.026 Score=37.14 Aligned_cols=87 Identities=20% Similarity=0.114 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHHHHH
Q 036731 143 LKNARELSQSLTRAGLMPNVVTYNITIHALCNDE---QMDKAHDLFLDMEVKGVAP--NCVIFTTLMPSFIRKNETSKVI 217 (259)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~ 217 (259)
...+.+-|.+..+.|. ++..+.-.+.-++++++ +.+++..++++..+.+ .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666766666654 57777777888888888 6679999999998874 24 3455666777889999999999
Q ss_pred HHHHHHhhCCCccchH
Q 036731 218 ELLRSMDKRNVMPYAS 233 (259)
Q Consensus 218 ~~~~~~~~~~~~~~~~ 233 (259)
+.++.+++. .|+..
T Consensus 92 ~y~~~lL~i--eP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNN 105 (152)
T ss_dssp HHHHHHHHH--CTTCH
T ss_pred HHHHHHHhc--CCCCH
Confidence 999999876 45433
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.82 E-value=0.03 Score=33.49 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 15 NTVTYNTIIDGLCKEGF---VDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
|+..+..+..++...++ .++|..++++..+.. +-+......+...+...|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444432222 345555555554432 223344444444455555555555555555443
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.78 E-value=0.051 Score=35.53 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHhcCCh------HHHHHHHHHHhhCCCCCchH-hHHHHHH------HHhhcCChhHHHHHHHHHHHc
Q 036731 14 PNTVTYNTIIDGLCKEGFV------DKAKELFLQMKDENINPNVV-TYNSLIH------GFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~~~~~~a~~~~~~~~~~ 80 (259)
-|..+|=..+...-+.|+. ++..++|++.... ++|+.. .|...+. .+...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3788999999999989999 8999999988875 566532 1111111 123448999999999999765
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 036731 81 GLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119 (259)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 119 (259)
+-.- ...|......=.+.|++..|.+++.+....+..|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3333 6666666677788999999999999999877665
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.51 E-value=0.031 Score=36.78 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC---ChhHHHHHHHHHHHcCCCC--chhhHHHHHHHHHHcCCHHHHH
Q 036731 32 VDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN---DGNEAEYLFIEMMDRGLQS--DVVTFNVIMDELCKNRKMDEAT 106 (259)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 106 (259)
...+.+-|.+....|. ++..+...+.-++++.+ +.++++.++++..+.. .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4456666766666553 67777777777888887 6668999999998874 23 3445556777889999999999
Q ss_pred HHHHHHHhC
Q 036731 107 RLLDLMIQG 115 (259)
Q Consensus 107 ~~~~~~~~~ 115 (259)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999885
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.24 E-value=0.13 Score=37.93 Aligned_cols=92 Identities=12% Similarity=0.029 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHH
Q 036731 67 GNEAEYLFIEMMDRGLQSD---VVTFNVIMDELCKN-----RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC 138 (259)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (259)
...|...+++..+. .|+ ...|..+...|... |+.++|.+.|++..+.+ |+. +..++......++
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~----~id~~v~YA~~l~ 250 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAH----DPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTT----CSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCC----CchHHHHHHHHHH
Confidence 34566666776665 344 45788888888884 89999999999988754 321 2477888888888
Q ss_pred hc-CChHHHHHHHHHHHHcCCC--CChhhHH
Q 036731 139 KI-GKLKNARELSQSLTRAGLM--PNVVTYN 166 (259)
Q Consensus 139 ~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~ 166 (259)
+. |+.+.+.+.+++....... |+....+
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 84 8899999999999887665 5544443
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.12 E-value=0.075 Score=39.11 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-
Q 036731 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK-----IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCND- 175 (259)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 175 (259)
...|...+++..+.+ |+ -.+...|..+...|.+ .|+.++|.+.|++..+.+..-+..++......++..
T Consensus 179 l~~A~a~lerAleLD--P~---~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PS---YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHC--TT---HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC--CC---cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 466777788777653 32 1245789999999998 499999999999999864322366777778888774
Q ss_pred CChhHHHHHHHHHHhcCCC--CcHHHHH
Q 036731 176 EQMDKAHDLFLDMEVKGVA--PNCVIFT 201 (259)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~--p~~~~~~ 201 (259)
|+.+.+.+.+++....... |+....+
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9999999999999987555 5544333
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.98 E-value=1.2e-05 Score=62.89 Aligned_cols=202 Identities=12% Similarity=0.146 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
..|..|..+..+.+.+.+|++-|-+. -|+..|..++....+.|.+++-..++...++..- ++..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 34777888888888777776655222 2566677888888888888888887765555422 344456688888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------------------
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG------------------- 157 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------- 157 (259)
++.++..+..+++. .| +..-...+.+-|...|.++.|.-+|..+....
T Consensus 127 Ak~~rL~elEefl~-------~~------N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GP------NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HTSCSSSTTTSTTS-------CC------SSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HhhCcHHHHHHHHc-------CC------CcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 88877655433321 12 22444555666666666666665554432110
Q ss_pred -CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHH
Q 036731 158 -LMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILS 236 (259)
Q Consensus 158 -~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (259)
-.-++.||-.+-.+|...+++.-|.-.--.+.-. |+ -...++..|...|.+++...+++...... .....+|+
T Consensus 194 rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFT 267 (624)
T 3lvg_A 194 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 267 (624)
T ss_dssp TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHH
T ss_pred HhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHH
Confidence 0125667777777777777766665443333321 11 22344555566666666666666554221 23455566
Q ss_pred HHHHHHHHh
Q 036731 237 IIVDLLVKN 245 (259)
Q Consensus 237 ~l~~~~~~~ 245 (259)
-|.-.|++-
T Consensus 268 ELaILYsKY 276 (624)
T 3lvg_A 268 ELAILYSKF 276 (624)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHHhc
Confidence 555555543
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.045 Score=46.06 Aligned_cols=128 Identities=8% Similarity=0.020 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhc------CCCC-c---
Q 036731 129 AYGCLIDGLCKIGK-LKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ-MDKAHDLFLDMEVK------GVAP-N--- 196 (259)
Q Consensus 129 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~------~~~p-~--- 196 (259)
.-..++..+...++ ++.|..+++++.+.....+......++..+...++ --+|.+++.+..+. ...+ +
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34455666666666 58899999999887422122222233333333332 22455555444321 1111 1
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 197 -------CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 197 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
......-.+.|...|+++.|.++-++....- +.+-.+|..|..+|...|+++.|+-.+|.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 1122222456778999999999999988652 34678999999999999999999987764
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.90 E-value=0.42 Score=37.06 Aligned_cols=186 Identities=11% Similarity=0.063 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CchHhHHHHHHHHhhc-CChhHHHHHHHHHHHcC-------CCCc
Q 036731 15 NTVTYNTIIDGLCKEGFVDKAKELFLQMKDENIN-PNVVTYNSLIHGFCYA-NDGNEAEYLFIEMMDRG-------LQSD 85 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~-------~~~~ 85 (259)
+...+..|.......|+.-...++.+.+-....+ ....+....+.-..+. +.....-..+......| ...|
T Consensus 32 ~~k~~~LL~~L~~~~g~~vsr~~L~~~lW~~~~~~~a~~~L~~~i~rLRk~L~~~~~~~~~i~~~~~~GY~l~~~~~~~D 111 (388)
T 2ff4_A 32 TPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCD 111 (388)
T ss_dssp SHHHHHHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSSEEEECCCGGGBH
T ss_pred ChHHHHHHHHHHhCCCCcccHHHHHHHhCCCCCChhHHHHHHHHHHHHHHhhcccCCCCceEEEEECCEEEEcCCCccch
Confidence 5556665555556667766666677666544221 1233444444332221 11000000000000111 1223
Q ss_pred hhhHHHHHHHHH---HcCCHHHHHHHHHHHHhCCCCCC-------Cc--------cchhHHHHHHHHHHHHhcCChHHHH
Q 036731 86 VVTFNVIMDELC---KNRKMDEATRLLDLMIQGGVRPD-------AF--------CEINIVAYGCLIDGLCKIGKLKNAR 147 (259)
Q Consensus 86 ~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~-------~~--------~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (259)
...|..++.... ..|+.+.|...+.+....--.+- .+ ...-..+...++..+...|+++++.
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 444555544332 35788888888888765321110 00 0001123334556666778888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcHHHHH
Q 036731 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-----KGVAPNCVIFT 201 (259)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~ 201 (259)
..+..+.... +.+...|..+|.++...|+..+|++.|+.... .|+.|+..+-.
T Consensus 192 ~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 192 AELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 7777776653 33666788888888888888888888777643 37777766543
No 234
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.81 E-value=0.95 Score=40.56 Aligned_cols=191 Identities=14% Similarity=0.095 Sum_probs=115.6
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-------------
Q 036731 56 SLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF------------- 122 (259)
Q Consensus 56 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------- 122 (259)
.++..+...+.++-+.++... .+.+....-.+..+|...|++++|.+.|.+... ++..+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 344445555666555543322 122444445567788899999999999976521 2211111
Q ss_pred ----cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036731 123 ----CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN----VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194 (259)
Q Consensus 123 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 194 (259)
...-..-|..++..+-+.+.++.+.++-+...+....-+ ...|..+.+.+...|++++|...+-.+.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 001124578888999999999999988877665422112 125788999999999999999999888776443
Q ss_pred CcHHHHHHHHHHHHhcCCH------------HHHHHHHHHHhh-C-CCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 195 PNCVIFTTLMPSFIRKNET------------SKVIELLRSMDK-R-NVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 195 p~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
......|+..++..|.. +++.+++..--+ . .+.....-|..|=..+...|++.+|..+
T Consensus 971 --~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred --HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 45566777766665554 444444432211 1 1111122344444445778888887664
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.45 Score=40.25 Aligned_cols=134 Identities=11% Similarity=0.005 Sum_probs=82.8
Q ss_pred HHHHHHHHhhcCC-hhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC-HHHHHHHHHHHHhC------CCCCCCc---
Q 036731 54 YNSLIHGFCYAND-GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRK-MDEATRLLDLMIQG------GVRPDAF--- 122 (259)
Q Consensus 54 ~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~~~--- 122 (259)
...++..+...++ ++.|..+++++.......+......++..+...++ --+|.+++.+..+. ...+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455666666666 58899999999887332222222233333333332 23455555444321 1111110
Q ss_pred --cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036731 123 --CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAHDLFLDME 189 (259)
Q Consensus 123 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 189 (259)
...+......-.+.+...|+++.|+.+-++.... .|+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0001123344456677899999999999998886 344 6699999999999999999999998874
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.65 E-value=0.089 Score=40.80 Aligned_cols=66 Identities=5% Similarity=-0.030 Sum_probs=38.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCC
Q 036731 54 YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMI-----QGGVRPD 120 (259)
Q Consensus 54 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~ 120 (259)
...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+++. +.|+.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3445555566666666666666665542 3355566666666666666666666666543 2355554
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.45 E-value=0.21 Score=30.10 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHH
Q 036731 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDL 241 (259)
Q Consensus 180 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (259)
+..+-++.+....+-|++.+..+.+++|.+.+++..|.++|+-++.+ +.+...+|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 45555555566666777777777777777777777777777666543 22233455555543
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.44 E-value=1.2 Score=39.88 Aligned_cols=215 Identities=10% Similarity=0.065 Sum_probs=131.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC-----------------
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ----------------- 83 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 83 (259)
.++..+.+.+.++-+.++..... -+...--.+..++...|++++|.+.|.+... |+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 45566667777777766554432 2344445567788999999999999976531 110
Q ss_pred ------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036731 84 ------SDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG 157 (259)
Q Consensus 84 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (259)
.-..-|..++..+-+.+.++.+.++-....+.....+. ......|..+.+++...|++++|...+-.+....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~--~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE--DLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCH--HHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCCh--hhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 01234677888899999999998887766654222111 1123478899999999999999999998887654
Q ss_pred CCCChhhHHHHHHHHHhcCCh------------hHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH-
Q 036731 158 LMPNVVTYNITIHALCNDEQM------------DKAHDLFLDMEVK--GVAPNCVIFTTLMPSFIRKNETSKVIELLRS- 222 (259)
Q Consensus 158 ~~~~~~~~~~li~~~~~~~~~------------~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~- 222 (259)
.+ ......|+...+..|.. +++.+++....+. .....+.-|..|-.-+...|++..|..++-+
T Consensus 969 ~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 33 44666677766665543 3444444332211 1111123456666666778888776665543
Q ss_pred HhhC----CC------ccchHHHHHHHHHHHHh
Q 036731 223 MDKR----NV------MPYASILSIIVDLLVKN 245 (259)
Q Consensus 223 ~~~~----~~------~~~~~~~~~l~~~~~~~ 245 (259)
+.+. .. ..-...|..+|.++.--
T Consensus 1047 ~~RL~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1047 LSRYISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhccccccchhHHHHHHHHHHHHHHHhcC
Confidence 3221 01 11234666777776554
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.14 E-value=0.26 Score=31.21 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=60.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhH---HHHHHHHHHHcCCC-CchhhHHHHHHHHHHcCCH
Q 036731 27 CKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNE---AEYLFIEMMDRGLQ-SDVVTFNVIMDELCKNRKM 102 (259)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 102 (259)
........+.+-|.+....|. ++..+--.+.-++.+.+.... ++.+++++.+.+.+ -.....-.|.-++.+.|++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 333445556666666655553 666666667777777777666 88888888876421 1333444567789999999
Q ss_pred HHHHHHHHHHHhC
Q 036731 103 DEATRLLDLMIQG 115 (259)
Q Consensus 103 ~~a~~~~~~~~~~ 115 (259)
++|.+.++.+.+.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.07 E-value=0.35 Score=30.61 Aligned_cols=85 Identities=19% Similarity=0.085 Sum_probs=61.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHH
Q 036731 140 IGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK---AHDLFLDMEVKGVAP--NCVIFTTLMPSFIRKNETS 214 (259)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~ 214 (259)
......+.+-|......|. |+..+--.+.-+++++.+... +..+++++...+ .| .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3345556666666655554 577777777778888877665 888999988764 23 3344555667889999999
Q ss_pred HHHHHHHHHhhC
Q 036731 215 KVIELLRSMDKR 226 (259)
Q Consensus 215 ~a~~~~~~~~~~ 226 (259)
+|.+.++.+++.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 241
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.69 E-value=0.46 Score=30.34 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHH
Q 036731 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLL 242 (259)
Q Consensus 180 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (259)
+..+-++.+...++-|++.+..+.+++|.+.+++..|.++|+-++.+ +.+...+|..+++-+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 45556666666777888888888888888888888888888877654 233455676666543
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.50 E-value=0.56 Score=30.22 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=55.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCc
Q 036731 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVM 229 (259)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (259)
+.......+..+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4556677788888889989888888886443 4778888888999999999999999999999888865
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.73 Score=36.26 Aligned_cols=101 Identities=10% Similarity=-0.050 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhH
Q 036731 87 VTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTY 165 (259)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 165 (259)
.+...+...|.+.|+++.|.+.+.++...-..+.. -...+..+++.+...+++..+...+++....- -.++....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~----kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA----KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 36778999999999999999999999875444443 56889999999999999999999999876431 11222221
Q ss_pred HHH----HHHHHhcCChhHHHHHHHHHHhc
Q 036731 166 NIT----IHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 166 ~~l----i~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
+.+ ...+...+++..|...|-+....
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111 22234578898888888776544
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.34 E-value=0.61 Score=30.04 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=83.4
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH
Q 036731 27 CKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEAT 106 (259)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 106 (259)
.-.|.+++..++..+...+ .+..-||.+|--....-+-+-..++++..-.. .|.. .+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 4467777777777776654 24445555555444444444444444433221 1221 234444444
Q ss_pred HHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 036731 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFL 186 (259)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 186 (259)
..+-.+- . +.......++.....|.-++-.+++..+... .+|++...-.+..+|.+.|+..++.+++.
T Consensus 82 ~C~~~~n---~--------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 82 ECGVINN---T--------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHHHHTT---C--------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhc---c--------hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 4443221 1 1256666777777888888888888775442 35677777778888888888888888888
Q ss_pred HHHhcCCC
Q 036731 187 DMEVKGVA 194 (259)
Q Consensus 187 ~~~~~~~~ 194 (259)
+.-+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 88887754
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.87 Score=35.82 Aligned_cols=97 Identities=11% Similarity=-0.005 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc---CCCCchhh--HH
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDE--NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR---GLQSDVVT--FN 90 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 90 (259)
++..+...|.+.|+++.|.+.|.++... +..--...+-.+++.+...+++..+...+.+.... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4667889999999999999999999865 33344667888889999999999999999887642 22222221 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 036731 91 VIMDELCKNRKMDEATRLLDLMIQ 114 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~ 114 (259)
.-...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223457889998888877654
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.61 E-value=0.0011 Score=52.26 Aligned_cols=181 Identities=9% Similarity=0.060 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 93 (259)
-|+..|..+|.+..+.|++++-.+.+...++.. .++..=+.|+-+|++.++..+-.+++ . .||..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHH
Confidence 377789999999999999999999997776652 34455578999999999987754443 1 35666667778
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCc--------------cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 036731 94 DELCKNRKMDEATRLLDLMIQGGVRPDAF--------------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLM 159 (259)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (259)
+-|...|.++.|.-+|..+..-..-.... -..++.||-.+-.+|...+++..|.-.--.+.-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 88888888887777776543211000000 1225689999999999999888776665444422
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 036731 160 PNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIR 209 (259)
Q Consensus 160 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 209 (259)
..-...++..|...|.+++-+.+++.-.... +.....|+-|.-.|++
T Consensus 229 --adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 229 --ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp --SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 1123345556667777777777776655321 3344555555544444
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.53 E-value=0.88 Score=29.08 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMP 205 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 205 (259)
|.-+..+-++.+...++.|++......+++|-+.+++..|.++|+-++.+ +.+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44467777778888889999999999999999999999999999998876 2344556777664
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.30 E-value=0.77 Score=27.69 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=34.6
Q ss_pred ChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 036731 66 DGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQ 114 (259)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (259)
|.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445666666666667777777777777777777777777777777663
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.57 E-value=2.9 Score=32.42 Aligned_cols=171 Identities=12% Similarity=0.008 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCC---CchHhHHHHHHHHhhc-CChhHHHHHHHHHHHcCCCCchhhH--
Q 036731 17 VTYNTIIDGLCKEGFVDKAKELFLQMKDE-NIN---PNVVTYNSLIHGFCYA-NDGNEAEYLFIEMMDRGLQSDVVTF-- 89 (259)
Q Consensus 17 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 89 (259)
.+...|...|.+.|+.++..+++...+.- +.- -.......++..+... +..+.-.++..+..+.... ...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45667889999999999999999887532 111 1344567788877664 3344445555554432111 22333
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChh
Q 036731 90 ----NVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA--GLMPNVV 163 (259)
Q Consensus 90 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 163 (259)
..++..|...|++.+|.+++.++.+.=...+. ...-..++..-+..|...+++.++...+...... .+.+++.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25789999999999999999888753222221 1224567788888999999999999999887543 2223333
Q ss_pred hHHHH----HHHHH-hcCChhHHHHHHHHHH
Q 036731 164 TYNIT----IHALC-NDEQMDKAHDLFLDME 189 (259)
Q Consensus 164 ~~~~l----i~~~~-~~~~~~~a~~~~~~~~ 189 (259)
.-..+ ...+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 32221 22344 6788998888776653
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.14 E-value=3.6 Score=32.52 Aligned_cols=231 Identities=10% Similarity=0.054 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCchHh--HHHHHHHHhhcCChhHH--HHHHHHHHH--cC-CCC-
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNVVT--YNSLIHGFCYANDGNEA--EYLFIEMMD--RG-LQS- 84 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~li~~~~~~~~~~~a--~~~~~~~~~--~~-~~~- 84 (259)
........++..|.+.|+++...+.+..+.+. |..+...+ .+.++.........+.. ..+.+.+.. .| +-.
T Consensus 54 s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE 133 (445)
T 4b4t_P 54 SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVE 133 (445)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHH
Confidence 34556777888888888888887777665543 32222211 12222222223332221 111111110 11 111
Q ss_pred --chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCC
Q 036731 85 --DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTR----AGL 158 (259)
Q Consensus 85 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~ 158 (259)
.......|...+...|++.+|.+++..+...-..... ...-...+...++.|...+++..|..++++... ...
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~-~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME-MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 1223456788899999999999999998632222211 112346788889999999999999999998743 222
Q ss_pred CCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCcHHHHH----HHHHHHHhcCCHHHHHHHHHHHhhCCCccc
Q 036731 159 MPN--VVTYNITIHALCNDEQMDKAHDLFLDMEVK-GVAPNCVIFT----TLMPSFIRKNETSKVIELLRSMDKRNVMPY 231 (259)
Q Consensus 159 ~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (259)
.|+ ...+...+..+...+++.+|...|.++.+. ...-+...+. .++.+..-.+....-..++........-++
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~ 292 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKK 292 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccc
Confidence 222 234566677778889999988888777543 1111222222 122222222222222333333322222356
Q ss_pred hHHHHHHHHHHHHh
Q 036731 232 ASILSIIVDLLVKN 245 (259)
Q Consensus 232 ~~~~~~l~~~~~~~ 245 (259)
...+..++.+|...
T Consensus 293 l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 293 LESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhc
Confidence 67788888887654
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.53 E-value=2.1 Score=28.54 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHhcC--C--
Q 036731 126 NIVAYGCLIDGLCKIGKLKNARELSQSLTRAG-LMPNV-------VTYNITIHALCNDEQMDKAHDLFLDMEVKG--V-- 193 (259)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~-- 193 (259)
+..++-.-++.+...|.++.|+-+...+.... ..|+. .++..+..++...+++..|...|++..+.. +
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666777888899999888877755321 22332 255677788889999999999998854320 0
Q ss_pred CC--------------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 194 AP--------------------NCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 194 ~p--------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
.+ +.+.--.+..+|.+.+++++|..+++.+..
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 01 112223356777788888888888776543
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.66 E-value=2.4 Score=28.29 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=67.5
Q ss_pred ccccCCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCch-------HhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 036731 10 VVCKPNTVT--YNTIIDGLCKEGFVDKAKELFLQMKDE-NINPNV-------VTYNSLIHGFCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 10 ~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~ 79 (259)
.|..|.... +-.-+..+...|.++.|+-+.+.+... +..|+. .++..+..++...+++..|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345554444 344577788999999999888876543 112331 2456677888999999999999998642
Q ss_pred cC------------------------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 036731 80 RG------------------------LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 80 ~~------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
.. ...+...---+..+|...+++++|+.+++.+...
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11 0111133344778899999999999999876543
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.31 E-value=1.9 Score=25.91 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 036731 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
-..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. .||...|.+|-. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 357888888888887653 22222223445678999999998875543 788888877654 5889999999988
Q ss_pred HHHhhCCCccchHHHH
Q 036731 221 RSMDKRNVMPYASILS 236 (259)
Q Consensus 221 ~~~~~~~~~~~~~~~~ 236 (259)
.++...| .|....|.
T Consensus 92 ~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTCS-SHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 8888776 45444444
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.00 E-value=2 Score=25.82 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 036731 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
-..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. .||...|.+|-. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 357888888888887653 22222223445678999999998876554 788888877654 5789999999888
Q ss_pred HHHhhCCCccchHHHH
Q 036731 221 RSMDKRNVMPYASILS 236 (259)
Q Consensus 221 ~~~~~~~~~~~~~~~~ 236 (259)
.++...| .|....|.
T Consensus 93 ~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 93 NRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHTTCC-CHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 8888776 45444444
No 255
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=89.85 E-value=2.1 Score=30.04 Aligned_cols=182 Identities=12% Similarity=0.053 Sum_probs=88.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHh--HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh--HHHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVT--YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVIMDELC 97 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 97 (259)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 45566778999988888887766665544321 1223444556677654 444555665554321 123445556
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHh
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT---YNITIHALCN 174 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~ 174 (259)
..|+.+-+..+++.....+..++. .+..-.+ .+...+..|+.+- ++.+.+.|..++... -...+...+.
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~---~~~~g~t-~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEA---RNYDGLT-ALHVAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTC---CCTTSCC-HHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCccccccc---cCcCCCc-HHHHHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHH
Confidence 677776655555443211112111 0111122 2333445566544 444445555444221 2233444456
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhcCCHHHHHHHH
Q 036731 175 DEQMDKAHDLFLDMEVKGVAPNCV---IFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
.|+.+-+..++ +.|..++.. -.+. +...+..|..+-+..++
T Consensus 160 ~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll 203 (241)
T 1k1a_A 160 NNSLSMVQLLL----QHGANVNAQMYSGSSA-LHSASGRGLLPLVRTLV 203 (241)
T ss_dssp TTCHHHHHHHH----HTTCCTTCBCTTSCBH-HHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHH----HcCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 67765444444 445444321 1222 33334566665444444
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.61 E-value=6.5 Score=31.07 Aligned_cols=194 Identities=12% Similarity=0.107 Sum_probs=121.5
Q ss_pred CChHHHHHHHHHHhhC-----CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHH-cCCCCchhh--HHHHHHHHHHcCC
Q 036731 30 GFVDKAKELFLQMKDE-----NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMD-RGLQSDVVT--FNVIMDELCKNRK 101 (259)
Q Consensus 30 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~--~~~l~~~~~~~~~ 101 (259)
|+++.|++.+..+.+. ...-.......++..|...++++...+.+.-+.. +|..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888877666542 2344566788899999999999998887776653 333322222 1222333333333
Q ss_pred HHHH--HHHHHHHHhCCCCCCC-cc-chhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---hhhHHHHHHHH
Q 036731 102 MDEA--TRLLDLMIQGGVRPDA-FC-EINIVAYGCLIDGLCKIGKLKNARELSQSLTRA--GLMPN---VVTYNITIHAL 172 (259)
Q Consensus 102 ~~~a--~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~ 172 (259)
.+.. ..+.+.+. .+.... +. .........|...+...|++.+|..++..+... |.... ...+...++.|
T Consensus 110 ~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322 22222111 111110 00 012345677889999999999999999998642 22211 34667778889
Q ss_pred HhcCChhHHHHHHHHHHh----cCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 173 CNDEQMDKAHDLFLDMEV----KGVAPNC--VIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
...+++..|..+++++.. ....|+. ..+...+..+...+++.+|.+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999998753 2222222 3466777888889999999998888754
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=88.28 E-value=4.8 Score=27.81 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036731 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160 (259)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (259)
....+..+|..|...|+... ....|......+...|++.+|..+|+.-.+.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~-----~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTK-----LSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTT-----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35566667776666665544 34566666666667777777777777666665555
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.09 E-value=2.4 Score=30.85 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=35.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
...+.|++++++.....-.+... -|...-..+++.+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34566777777777666666542 25556666777777777777777766666544
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.68 E-value=11 Score=31.29 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHH----HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVTYNIT----IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVI 217 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 217 (259)
+.+.|...+....+... .+......+ .......+...++...+...... .++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 77888888888765432 233322222 22222334245566666665443 234444445555556778888888
Q ss_pred HHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhhhc
Q 036731 218 ELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQFNR 257 (259)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 257 (259)
+.|..|..... ........+..++...|+.++|..+|.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888765322 2344445566777788888888777654
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=87.28 E-value=5 Score=28.82 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=10.5
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 036731 21 TIIDGLCKEGFVDKAKELF 39 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~ 39 (259)
+.+...++.|+++.+..++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 3455556667765554444
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.95 E-value=4.3 Score=25.89 Aligned_cols=68 Identities=9% Similarity=0.086 Sum_probs=38.0
Q ss_pred CCchHhHHHHHHHHhhcCC---hhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 036731 48 NPNVVTYNSLIHGFCYAND---GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
.|+..+--.+.-++.+..+ ...++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444443334444444443 3456677777666542222344445666677777777777777777664
No 262
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=85.74 E-value=10 Score=28.98 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCCh--hHHHHHHHHHH
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAEYLFIEMM 78 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~ 78 (259)
....+|.-|...++.++|...++++..... .......++......++. +.+-.++..+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 355778889999999999999998753221 233344445444433332 23555555555
No 263
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=84.78 E-value=3.5 Score=27.93 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=37.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh--HHHHHHHHHHcC
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVIMDELCKNR 100 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 100 (259)
+...+..|+.+.+..++..-...--..+..-++. +...+..|+.+- ++.+.+.|..++... -.+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIEI----AKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 3444567777777666643321100112222233 333445566544 444445565544321 122344445567
Q ss_pred CHHHHHHHH
Q 036731 101 KMDEATRLL 109 (259)
Q Consensus 101 ~~~~a~~~~ 109 (259)
+.+-+..++
T Consensus 84 ~~~~~~~Ll 92 (201)
T 3hra_A 84 RTEILAYML 92 (201)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 665554444
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.61 E-value=11 Score=28.24 Aligned_cols=124 Identities=9% Similarity=-0.001 Sum_probs=74.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC-----CCCCchHhHHHHHHHHhhcCChhHHHHH----HHHHHHcCCCCchhhHHHHH
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDE-----NINPNVVTYNSLIHGFCYANDGNEAEYL----FIEMMDRGLQSDVVTFNVIM 93 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 93 (259)
+......|++-+|.+.++....+ ...--......-...+.+.|+...|-++ .+-+.+.+.+++......++
T Consensus 20 l~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45556678888888777665432 1111111222223344567777665554 45555678888888888888
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----hCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHH
Q 036731 94 DELCKNRKMD-EATRLLDLMI----QGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150 (259)
Q Consensus 94 ~~~~~~~~~~-~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 150 (259)
..+.....-+ .-.++++++. +.|-.+.. ++.....+...|.+.|++.+|...|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~G----dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFG----DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTC----CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 8776643211 1223333333 33332322 6688999999999999999988866
No 265
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=82.77 E-value=13 Score=27.75 Aligned_cols=58 Identities=9% Similarity=0.041 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCCh--hHHHHHHHHHH
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDG--NEAEYLFIEMM 78 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~ 78 (259)
...+|.-|...|+.++|...++++.... ........++......++. +.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4578889999999999999998875332 1222333444444444332 23555555554
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=81.02 E-value=9.4 Score=25.03 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036731 146 ARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195 (259)
Q Consensus 146 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 195 (259)
+..+|..|...|+-.. ...|......+...|++.+|..+|+.-.+.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555443322 2344444555555555555555555555554444
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.42 E-value=7.3 Score=23.44 Aligned_cols=80 Identities=8% Similarity=-0.158 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 036731 30 GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109 (259)
Q Consensus 30 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 109 (259)
..-++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+ ..||...|..|. -.+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 346788888888877643 2222223345677899999998876533 378888886654 45788888888888
Q ss_pred HHHHhCCC
Q 036731 110 DLMIQGGV 117 (259)
Q Consensus 110 ~~~~~~~~ 117 (259)
.++...|.
T Consensus 92 ~~la~sg~ 99 (115)
T 2uwj_G 92 AGLGGSSD 99 (115)
T ss_dssp HHHHTCSS
T ss_pred HHHHhCCC
Confidence 78877653
No 268
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=80.39 E-value=9.4 Score=24.67 Aligned_cols=61 Identities=3% Similarity=0.069 Sum_probs=37.1
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 187 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34556666654433 33444444555566777777777666556666777777777777655
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.78 E-value=7.8 Score=23.37 Aligned_cols=79 Identities=6% Similarity=-0.045 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 036731 30 GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109 (259)
Q Consensus 30 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 109 (259)
..-++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+ ..||...|..|.. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 346788888888877643 2222223345677899999999887544 3788888866543 4788888888888
Q ss_pred HHHHhCC
Q 036731 110 DLMIQGG 116 (259)
Q Consensus 110 ~~~~~~~ 116 (259)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7776655
No 270
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=79.47 E-value=13 Score=25.70 Aligned_cols=176 Identities=15% Similarity=0.124 Sum_probs=82.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch---hhHHHHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV---VTFNVIMDELCK 98 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 98 (259)
.+...++.|+++....++..-...-..++..-.+.| ...+..|+.+-+ +.+.+.|..++. .-++ .+...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEIV----EFLLQLGVPVNDKDDAGWS-PLHIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCC-HHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCC-HHHHHHH
Confidence 466677899999888888764322112233233333 344556665544 444455654443 2222 3344455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcC
Q 036731 99 NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT--YNITIHALCNDE 176 (259)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~ 176 (259)
.|+.+- ++.+.+.|..++.. +..-. ..+...+..|+.+-+.. +.+.|..++... -...+...+..|
T Consensus 83 ~~~~~~----v~~Ll~~g~~~~~~---~~~g~-t~L~~A~~~~~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~ 150 (231)
T 3aji_A 83 AGXDEI----VKALLVKGAHVNAV---NQNGC-TPLHYAASKNRHEIAVM----LLEGGANPDAKDHYDATAMHRAAAKG 150 (231)
T ss_dssp HTCHHH----HHHHHHTTCCTTCC---CTTSC-CHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred cCHHHH----HHHHHHcCCCCCCC---CCCCC-CHHHHHHHcCCHHHHHH----HHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 666553 44444555544321 11222 23344455666654444 444554443321 112333445566
Q ss_pred ChhHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHH
Q 036731 177 QMDKAHDLFLDMEVKGVAPNC---VIFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
+.+-+..++ +.|..++. .-.+. +...+..|..+-+.-++
T Consensus 151 ~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll 192 (231)
T 3aji_A 151 NLKMVHILL----FYKASTNIQDTEGNTP-LHLACDEERVEEAKFLV 192 (231)
T ss_dssp CHHHHHHHH----HTTCCSCCCCTTSCCH-HHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHH----hcCCCccccCCCCCCH-HHHHHHCCCHHHHHHHH
Confidence 665444443 44444332 12222 33344567765544444
No 271
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=79.36 E-value=3.4 Score=29.51 Aligned_cols=193 Identities=9% Similarity=-0.013 Sum_probs=95.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHh-------HHHHHHHHh--hcCChhHHHHHHHHHHHcC---------CC
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVT-------YNSLIHGFC--YANDGNEAEYLFIEMMDRG---------LQ 83 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~~~--~~~~~~~a~~~~~~~~~~~---------~~ 83 (259)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 45566788999998889988877766665333 344444432 5678777777776543311 11
Q ss_pred C-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccch-----------hHHHHHHHHHHHHhcCChHHHHHHHH
Q 036731 84 S-DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEI-----------NIVAYGCLIDGLCKIGKLKNARELSQ 151 (259)
Q Consensus 84 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (259)
. +..-+ +.+...+..|+.+-+ +.+.+.|..++..... +..-. +.+...+..|+.+-+ +
T Consensus 88 ~~d~~g~-t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~-tpL~~A~~~g~~~~v----~ 157 (260)
T 3jxi_A 88 DVYYRGQ-TALHIAIERRCKHYV----ELLVEKGADVHAQARGRFFQPKDEGGYFYFGE-LPLSLAACTNQPHIV----H 157 (260)
T ss_dssp CSSEESB-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCEECCCSSSCCCCSCCSCS-SHHHHHHHTTCHHHH----H
T ss_pred ccccCCC-CHHHHHHHcCCHHHH----HHHHhCCCCcCccccccccCcccccccccCCC-CHHHHHHHcCCHHHH----H
Confidence 0 11112 234445566776544 4444556555431000 00112 234444556775544 4
Q ss_pred HHHH---cCCCCC---hhhHHHHHHHHHhcCC----hhHHHHHHHHHHhcCCCC----------cHHHHHHHHHHHHhcC
Q 036731 152 SLTR---AGLMPN---VVTYNITIHALCNDEQ----MDKAHDLFLDMEVKGVAP----------NCVIFTTLMPSFIRKN 211 (259)
Q Consensus 152 ~~~~---~~~~~~---~~~~~~li~~~~~~~~----~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~~ 211 (259)
.+.+ .|..++ ..-.+.|..++..... .+...++.+.+.+.|..+ |..-.+. +...++.|
T Consensus 158 ~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp-L~~A~~~g 236 (260)
T 3jxi_A 158 YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP-LMMAAKTG 236 (260)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH-HHHHHHTT
T ss_pred HHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH-HHHHHHcC
Confidence 4445 454443 3334445444432222 111234444444443222 2222333 33345678
Q ss_pred CHHHHHHHHHHHhh
Q 036731 212 ETSKVIELLRSMDK 225 (259)
Q Consensus 212 ~~~~a~~~~~~~~~ 225 (259)
+.+-+..++++-..
T Consensus 237 ~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 237 KIGIFQHIIRREIA 250 (260)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC
Confidence 88777777766543
No 272
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=79.16 E-value=6.7 Score=22.27 Aligned_cols=62 Identities=5% Similarity=0.040 Sum_probs=39.1
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccC
Q 036731 187 DMEVKGVAPNCVIFTTLMPSFIRKN-ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISL 249 (259)
Q Consensus 187 ~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 249 (259)
.+.+.|+.++..-. .++..+...+ ..-.+.++.+.+.+.+...+..|....+..+.+.|-..
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 35566766665443 4445555443 45566777777776665567777777778887777653
No 273
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=78.84 E-value=19 Score=27.24 Aligned_cols=93 Identities=9% Similarity=0.055 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC--ChhHHHHHHHHHHHcCCCCchhhHH---HHH
Q 036731 19 YNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN--DGNEAEYLFIEMMDRGLQSDVVTFN---VIM 93 (259)
Q Consensus 19 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~---~l~ 93 (259)
...++.-|...|+.++|...++++..... .......++......+ ..+.+..++..+.+.|+-+...... .++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~--~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~ 91 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL--LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEIL 91 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 56788889999999999999988853211 1112222333233322 2345667777777666543333222 222
Q ss_pred HHHHHc-CCHHHHHHHHHHHH
Q 036731 94 DELCKN-RKMDEATRLLDLMI 113 (259)
Q Consensus 94 ~~~~~~-~~~~~a~~~~~~~~ 113 (259)
..+-.. =|...|...+.++.
T Consensus 92 ~~l~Dl~lDiP~a~~~La~~v 112 (339)
T 1ug3_A 92 ELAEDMEIDIPHVWLYLAELV 112 (339)
T ss_dssp HHHHHHTTTCTTHHHHHHHHH
T ss_pred hhChHhhcCccchHHHHHHHH
Confidence 222221 14445555555554
No 274
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=78.67 E-value=8.4 Score=24.56 Aligned_cols=60 Identities=2% Similarity=0.002 Sum_probs=35.8
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 188 MEVKGVAPNCVIFTTLMPSFIRKN-ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 188 ~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455666654433 3344444444 5556777777777666566666666677777777655
No 275
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=77.67 E-value=16 Score=25.92 Aligned_cols=90 Identities=13% Similarity=0.060 Sum_probs=56.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC--CCCC----chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHH
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDE--NINP----NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMD 94 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 94 (259)
--++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++. . .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 4578889999999999999887643 2232 11222333443333333344445555552 2 445666677788
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 036731 95 ELCKNRKMDEATRLLDLMI 113 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~ 113 (259)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8999999999999886553
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.11 E-value=21 Score=26.93 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=53.4
Q ss_pred HHhhcCChhHHHHHH----HHHHHcCCCCchhhHHHHHHHHHHcCCHH-HHHHHHHHHH----hCCCCCCCccchhHHHH
Q 036731 60 GFCYANDGNEAEYLF----IEMMDRGLQSDVVTFNVIMDELCKNRKMD-EATRLLDLMI----QGGVRPDAFCEINIVAY 130 (259)
Q Consensus 60 ~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~~~~~~~~~~~~~~~ 130 (259)
.+.+.|+...+-++- +-+.+.++++|......++..+.....-+ .-..+.+++. +.|-.+.. |+...
T Consensus 64 ~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~G----dp~LH 139 (336)
T 3lpz_A 64 TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAG----DPELH 139 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTC----CHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCC----CHHHH
Confidence 345566665544443 55556788888888888888777655311 1122333332 22322322 56788
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 036731 131 GCLIDGLCKIGKLKNARELS 150 (259)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~ 150 (259)
..+...|.+.+++.+|...|
T Consensus 140 ~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 140 HVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHH
Confidence 88889999988888887765
No 277
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=76.78 E-value=8.3 Score=24.96 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=36.6
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 187 DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 187 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
.+.+.|++++..=. .++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34556666655432 2334444444 556777777777766666677777777777777755
No 278
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=76.62 E-value=13 Score=24.06 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=34.6
Q ss_pred HHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 036731 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177 (259)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (259)
.+.+.|.+.+ ..-..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 12 ~l~~~g~r~T-------~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRIT-------PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCC-------HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCC-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3455666654 34445555555555566677777777666555555555555555555554
No 279
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=76.03 E-value=14 Score=24.11 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036731 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178 (259)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (259)
+.+.+.|..++ .--..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-.
T Consensus 16 ~~l~~~g~r~T-------~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNS-------KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CH-------HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCC-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34556666653 344455666666666677788888877766555666666666666665543
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.01 E-value=17 Score=25.15 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 036731 140 IGKLKNARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAP 195 (259)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 195 (259)
.+....+..+|..|...|+-.. ...|......+...|++.+|..+|+.-.+.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4446677788888877765433 3456677777777888888888888877777677
No 281
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=75.72 E-value=9.2 Score=24.92 Aligned_cols=60 Identities=7% Similarity=0.048 Sum_probs=34.4
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 188 MEVKGVAPNCVIFTTLMPSFIRKN-ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 188 ~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455666554333 2334444444 4556677777776665555666666666667666655
No 282
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=75.39 E-value=12 Score=24.24 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=36.0
Q ss_pred HHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 036731 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177 (259)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (259)
+.+.+.|.+++ .--..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 8 ~~L~~~g~r~T-------~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLT-------PQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCC-------HHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcC-------HHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34556666654 23444555555555 56777788777776655566665556666665554
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=75.30 E-value=15 Score=24.38 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036731 105 ATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMP 160 (259)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (259)
+..+|..|...|+... ....|......+-..|++.+|..+|+.-.+.+-.|
T Consensus 79 p~~if~~L~~~~IG~~-----~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVS-----LAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTT-----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3334444444444332 23444444444444444444444444444444333
No 284
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=75.09 E-value=14 Score=23.65 Aligned_cols=69 Identities=7% Similarity=-0.025 Sum_probs=47.3
Q ss_pred CCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 158 LMPNVVTYNITIHALCNDEQ---MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 158 ~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
-.|+..+--.+.-+++++.+ ..++..+++++...+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555555555556666554 4578888888887642123455566777888999999999999998875
No 285
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=75.00 E-value=14 Score=23.59 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=37.9
Q ss_pred HHhCCCCCCCccchhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036731 112 MIQGGVRPDAFCEINIVAYGCLIDGLCKIG-KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178 (259)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (259)
+.+.|.+.+ ..-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 9 l~~~g~r~T-------~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVT-------LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCC-------HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCC-------HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 456666654 34455566666555 6667888888887776666666666666666665543
No 286
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.49 E-value=45 Score=29.38 Aligned_cols=115 Identities=14% Similarity=-0.041 Sum_probs=54.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH--HHHHHHHhcC
Q 036731 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNIT--IHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT--TLMPSFIRKN 211 (259)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~ 211 (259)
.+.-.|+.+....++..+.+.. +..+...+ .-++...|+.+.+..+.+.+... ..|....-. ++.-+|+..|
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCC
Confidence 3445566666666666655431 22222222 23334567777777777666653 122222222 2233455667
Q ss_pred CHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcccCCcchhh
Q 036731 212 ETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEISLNSIPQF 255 (259)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 255 (259)
+.....+++..+.+.. ..+......+.-++...|+.+.+.+++
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 7666666776665431 222332223333333445544444444
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.36 E-value=16 Score=25.74 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 036731 144 KNARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN 196 (259)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 196 (259)
+.+..+|..|...|+-.. ...|......+...|++.+|..+|+.-.+.+..|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 456677777777765444 44666777777777888888888887777766664
No 288
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=73.42 E-value=15 Score=23.88 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=38.6
Q ss_pred HHHhCCCCCCCccchhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036731 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKIG-KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178 (259)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (259)
.+.+.|..++ .--..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 7 ~l~~~g~r~T-------~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVT-------LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCC-------HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCC-------HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3556666654 34445555555555 5667888888887776666666666666666666654
No 289
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=73.19 E-value=18 Score=24.31 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=56.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhh---HHH
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK-IGKLKNARELSQSLTRAGLMPNVVT---YNI 167 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ 167 (259)
.+...+..|+.+.-.++.+-+.+.|..++.. +..-.+.|..++.. ..+.....++.+.+.+.|..++... .+.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~---d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tt 117 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSR---TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV 117 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC---CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCC---CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCch
Confidence 3444444555554455555566666554421 11222222222221 2233344566666666665554321 112
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHh-cCCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036731 168 TIHALCNDEQM-DKAHDLFLDMEV-KGVAPNCVI---FTTLMPSFIRKNETSKVIELLRSMDKRNV 228 (259)
Q Consensus 168 li~~~~~~~~~-~~a~~~~~~~~~-~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (259)
.+...+..+.. ..-..+++.+.+ .|..++... .+. +....+.|..+.+.-+.+.+.+.+.
T Consensus 118 pLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp-L~~A~~~~~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA-LEFVKRCQKPIALKMMEDYIKKYNL 182 (186)
T ss_dssp TTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH-HHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 22222233322 233445666666 565544321 222 2233455555444333333444433
No 290
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=72.22 E-value=9.1 Score=24.53 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=12.9
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQ 41 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~ 41 (259)
.+...++.|+.+.+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHh
Confidence 34455667777777777665
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.10 E-value=22 Score=24.66 Aligned_cols=151 Identities=16% Similarity=0.094 Sum_probs=75.6
Q ss_pred HHHHhhcCChhHHHHHHHHHHHcCCCCchhh--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHH
Q 036731 58 IHGFCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135 (259)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (259)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++.. +..- ...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~---~~~g-~t~l~ 84 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMAL---DRHG-QTAAH 84 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCC---CTTS-CCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCcccc---CCCC-CCHHH
Confidence 4455677999888888887777665554321 2234555566777654 44445566554421 1111 23344
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHH---HHHHHHHHHh
Q 036731 136 GLCKIGKLKNARELSQSLTRAGLMP---NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVI---FTTLMPSFIR 209 (259)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~ 209 (259)
..+..|+.+.+..+++.....++.+ +....+.+ ...+..|+.+-+. .+.+.|..++... -...+...+.
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQETVQ----LLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHHHHH----HHHHcCCCcccccccCCCcHHHHHHH
Confidence 4556777776666655543211122 22222333 3334556654444 4444554443211 1123334456
Q ss_pred cCCHHHHHHHHH
Q 036731 210 KNETSKVIELLR 221 (259)
Q Consensus 210 ~~~~~~a~~~~~ 221 (259)
.|+.+-+..+++
T Consensus 160 ~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 160 NNSLSMVQLLLQ 171 (241)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 677765555544
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=71.77 E-value=11 Score=26.53 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHH
Q 036731 179 DKAHDLFLDMEVKGVAPN-CVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSI 237 (259)
Q Consensus 179 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (259)
+...++|..|...|+--. ..-|......+...|++.+|..+|+.-++.+-.|-...-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~ 190 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQK 190 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 577789999998876443 45677888888999999999999999998888886554443
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=71.76 E-value=22 Score=24.54 Aligned_cols=176 Identities=14% Similarity=0.092 Sum_probs=77.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCchH--hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh---HHHHHHHHH
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNVV--TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT---FNVIMDELC 97 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~ 97 (259)
+...++.|+++.+..+++ .|..++.. .-.+.+...+..|+.+-+..+ .+.|..++... -.+.+...+
T Consensus 13 l~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYY----ISKGAIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCBTTTTBCHHHHHH
T ss_pred HHHHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHH----HHcCCcchhhcCCcCCChhHHHH
Confidence 334567788766655554 44433321 112344555667776554444 44444332111 123444555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHh
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV---VTYNITIHALCN 174 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~ 174 (259)
..|+.+-+ +.+.+.|..++.. +.... ..+...+..|+.+- ++.+.+.|..++. ...+.+..+...
T Consensus 85 ~~~~~~~v----~~Ll~~g~~~~~~---~~~g~-t~l~~A~~~~~~~~----~~~Ll~~~~~~~~~~~~g~t~l~~a~~~ 152 (240)
T 3eu9_A 85 RQGHLSMV----VQLMKYGADPSLI---DGEGC-SCIHLAAQFGHTSI----VAYLIAKGQDVDMMDQNGMTPLMWAAYR 152 (240)
T ss_dssp HHTCHHHH----HHHHHTTCCTTCC---CTTSC-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred HcCCHHHH----HHHHHcCCCCccc---CCCCC-CHHHHHHHcCHHHH----HHHHHhcCCCccccCCCCCcHHHHHHHh
Confidence 56665543 4444555544321 11222 22344455566654 4444445544332 223344444333
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHH
Q 036731 175 DEQMDKAHDLFLDMEVKGVAPNCVI---FTTLMPSFIRKNETSKVIELLRS 222 (259)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~ 222 (259)
+......+++ .+.|..++... -...+...+..|+.+-+..+++.
T Consensus 153 -~~~~~~~~~L---~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 153 -THSVDPTRLL---LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199 (240)
T ss_dssp -CCSSTTHHHH---HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred -CChHHHHHHH---HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 3333333333 33333332211 11223344566777655555543
No 294
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=71.15 E-value=27 Score=25.32 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=34.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh--HHHHHHHHHHcC
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVIMDELCKNR 100 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 100 (259)
+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+..+ .+.|..++... -.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 4444556776655544433 3333222112334444556665544333 34454433211 112333444556
Q ss_pred CHHHHHHHH
Q 036731 101 KMDEATRLL 109 (259)
Q Consensus 101 ~~~~a~~~~ 109 (259)
+.+-+..++
T Consensus 107 ~~~~v~~Ll 115 (285)
T 3kea_A 107 NMQTVKLFV 115 (285)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 655443333
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=71.08 E-value=21 Score=24.58 Aligned_cols=181 Identities=9% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHh---HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh--HHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVT---YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVIMDEL 96 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 96 (259)
.+...++.|+.+-+..+++ .|..++... -...+...+..|+.+-+ +.+.+.|..++... -.+.+...
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A 116 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYIS----KGAIVDQLGGDLNSTPLHWATRQGHLSMV----VQLMKYGADPSLIDGEGCSCIHLA 116 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTCCTTCCBTTTTBCHHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH----cCCcchhhcCCcCCChhHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHHH
Confidence 4566677788765554443 433322111 12234444556665544 44445565544321 11344455
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHH
Q 036731 97 CKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVT---YNITIHALC 173 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~ 173 (259)
+..|+.+- ++.+.+.|..++. .+..-.+.+..+... +......+ .+.+.|..++... -...+...+
T Consensus 117 ~~~~~~~~----~~~Ll~~~~~~~~---~~~~g~t~l~~a~~~-~~~~~~~~---~L~~~~~~~~~~~~~~g~t~L~~A~ 185 (240)
T 3eu9_A 117 AQFGHTSI----VAYLIAKGQDVDM---MDQNGMTPLMWAAYR-THSVDPTR---LLLTFNVSVNLGDKYHKNTALHWAV 185 (240)
T ss_dssp HHTTCHHH----HHHHHHTTCCTTC---CCTTSCCHHHHHHHH-CCSSTTHH---HHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred HHcCHHHH----HHHHHhcCCCccc---cCCCCCcHHHHHHHh-CChHHHHH---HHHhcCCCcchhhccCCCcHHHHHH
Confidence 56677654 4444455554432 122223334333333 33223333 3344444333221 112344555
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNCVI--FTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
..|+.+-+..++ +.|..++... -...+....+.|+.+-+..+++...+
T Consensus 186 ~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 186 LAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 667766554444 3444443211 01224444567777666655554443
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=70.66 E-value=19 Score=23.52 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCC
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ--MDKAHDLFLDMEVKGVAP 195 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p 195 (259)
.....++.-|...|+.++|...++++..... ....+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567888999999999999999999853211 122334444455554322 455677777777666544
No 297
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=70.25 E-value=57 Score=28.77 Aligned_cols=180 Identities=11% Similarity=0.064 Sum_probs=78.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhhHHH--HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhc
Q 036731 63 YANDGNEAEYLFIEMMDRGLQSDVVTFNV--IMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKI 140 (259)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (259)
..|+.+.+..+.+.+... ..|....-.. +.-+|+..|+.....+++..+.... +. +++-...+.-+....
T Consensus 536 ~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~---~d----~VRraAViaLGlI~~ 607 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS---ND----DVRRAAVIALGFVLL 607 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS---CH----HHHHHHHHHHHHHTS
T ss_pred hCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC---cH----HHHHHHHHHHHhhcc
Confidence 455666666665555543 1222222222 2233445556554444665555421 11 333333333334445
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCcHHHHHHHHHHH--HhcC------
Q 036731 141 GKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM-DKAHDLFLDMEVKGVAPNCVIFTTLMPSF--IRKN------ 211 (259)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~------ 211 (259)
|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++.+++..+... +|..+-..-+.++ .-.|
T Consensus 608 g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp SSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccc
Confidence 55555555555544432 23333223333333334433 4566666666542 3333322222222 2222
Q ss_pred -CHHHHHHHHHHHhh-CCCccchHHHHHHHHHHHHhcccCCcchh
Q 036731 212 -ETSKVIELLRSMDK-RNVMPYASILSIIVDLLVKNEISLNSIPQ 254 (259)
Q Consensus 212 -~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 254 (259)
+.....+.+..... +.-.++...-..+.++....|...-.+..
T Consensus 684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~ 728 (963)
T 4ady_A 684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQL 728 (963)
T ss_dssp TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECS
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 23333333323222 22234555666666777766665444443
No 298
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=69.43 E-value=22 Score=23.54 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChh
Q 036731 111 LMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRA--GLMPNVVTYNITIHALCNDEQMD 179 (259)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~ 179 (259)
.+.+.|.+.+ .--..++..+...++.-.|.++++.+.+. +...+..|.-.-+..+...|-..
T Consensus 23 ~L~~~g~r~T-------~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 23 ILRQGGLKYT-------KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHTCCCC-------HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCC-------HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445666654 34455666666666677778888877766 55556666555666666666543
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=68.44 E-value=22 Score=23.26 Aligned_cols=72 Identities=11% Similarity=0.243 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCccchHHHH
Q 036731 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE--TSKVIELLRSMDKRNVMPYASILS 236 (259)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 236 (259)
....++.-|...|+.++|...++++....+. ...+...+..++-+.++ .+.+..++..+.+.++-+......
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~ 84 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 84 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 3466778888888888888888887532211 23444555555555332 345677777777666555544433
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=67.63 E-value=20 Score=22.60 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCcHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ--MDKAHDLFLDMEVKGVAPNCVI 199 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~ 199 (259)
.....++.-|...|+.++|...++++..... ....+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 8 kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 8 KEIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4566788899999999999999999863211 122334444555555432 4567778888877765544433
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=67.44 E-value=21 Score=22.57 Aligned_cols=78 Identities=10% Similarity=0.205 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCccchHHHHHHHHH
Q 036731 164 TYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE--TSKVIELLRSMDKRNVMPYASILSIIVDL 241 (259)
Q Consensus 164 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (259)
....++.-|...|+.++|...++++....+. ...+...+..++-+.+. .+.+..++..+.+.|+-+.......+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 3567888899999999999999998633221 23444555556665542 45678888888877766655554444333
Q ss_pred H
Q 036731 242 L 242 (259)
Q Consensus 242 ~ 242 (259)
+
T Consensus 88 ~ 88 (129)
T 2nsz_A 88 Y 88 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=67.35 E-value=19 Score=24.15 Aligned_cols=158 Identities=11% Similarity=0.019 Sum_probs=68.5
Q ss_pred HHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHh
Q 036731 60 GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCK 139 (259)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (259)
..+..|+.+.+..++..-...--..+..-++ .+...+..|+.+- ++.+.+.|..++.. +....+ .+...+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~---~~~g~t-~l~~A~~ 81 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIEI----AKALIDRGADINLQ---NSISDS-PYLYAGA 81 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHHH----HHHHHHTTCCTTCC---CTTSCC-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHH----HHHHHHcCCCCCCC---CCCCCC-HHHHHHH
Confidence 3456778777766664221000011222222 3444456677554 44445556555421 112222 2344456
Q ss_pred cCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 036731 140 IGKLKNARELSQSLTRAGLMP---NVVTYNITIHALCNDEQMDKAHDLFLDM-EVKGVAPNCVIFTTLMPSFIRKNETSK 215 (259)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~ 215 (259)
.|+.+-+..+++. .+..+ +....+. +...+..|+.+-+..+++.- .... ..+..-.+.+..+.........
T Consensus 82 ~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 82 QGRTEILAYMLKH---ATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp TTCHHHHHHHHHH---SCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHH
T ss_pred cCCHHHHHHHHhc---cCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhh
Confidence 6777666555543 22122 2222222 33345567766555554432 1111 1222333444444433322333
Q ss_pred HHHHHHHHhhCCCccc
Q 036731 216 VIELLRSMDKRNVMPY 231 (259)
Q Consensus 216 a~~~~~~~~~~~~~~~ 231 (259)
-.++++.+.+.|..++
T Consensus 157 ~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 157 YQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3455555555555443
No 303
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.33 E-value=34 Score=24.97 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=72.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC--CchhhHHHHHHHHHHcCC
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ--SDVVTFNVIMDELCKNRK 101 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 101 (259)
....+.|+++.|++....-.+.. +-|...-..++..+|-.|++++|.+-++...+.... |....|..+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~------- 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK------- 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH-------
Confidence 45567888888888887777663 556777777888888899999988888877765211 11223333332
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 036731 102 MDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLC--KIGKLKNARELSQSLTRA 156 (259)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 156 (259)
|+..=.++...+..|.....|. .-...++.+.. ..|+.++|..+-.+..+.
T Consensus 77 ---aE~~R~~vfaG~~~P~~~g~~~-~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 ---AAQARKDFAQGAATAKVLGENE-ELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHHTTSCCCEECCCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 2222233344444443322222 23334444443 458888888887777554
No 304
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.91 E-value=26 Score=23.26 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHH
Q 036731 144 KNARELSQSLTRAGLMPN-VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV 198 (259)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 198 (259)
+.+..+|..|...|+-.. ...|......+...|++.+|..+|+.-.+.+..|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 346778888888876544 4467777788888899999999999988888788543
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.77 E-value=35 Score=24.25 Aligned_cols=92 Identities=11% Similarity=-0.010 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 036731 130 YGCLIDGLCKIGKLKNARELSQSLTRA--GLMP----NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTL 203 (259)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 203 (259)
.---++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++. . .++.......
T Consensus 21 ~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~ 97 (235)
T 2d2s_A 21 GVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHH
Confidence 334577888999999999999887642 2221 11222333444344344445555555553 3 4456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHh
Q 036731 204 MPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~~~ 224 (259)
+..+.+.|+.++|.++|-+..
T Consensus 98 v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHHH
Confidence 888999999999999886543
No 306
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.81 E-value=27 Score=22.62 Aligned_cols=68 Identities=7% Similarity=-0.015 Sum_probs=46.1
Q ss_pred CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036731 159 MPNVVTYNITIHALCNDEQ---MDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKR 226 (259)
Q Consensus 159 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 226 (259)
.|+..+--.+.-+++++.+ ..++..+++++...+..-.....-.|.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555556666654 4577888888877532223344455667888999999999999998876
No 307
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=62.50 E-value=8.8 Score=24.62 Aligned_cols=47 Identities=9% Similarity=0.004 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 202 TLMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455555555556777777776666556666666667777776655
No 308
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=62.09 E-value=19 Score=22.66 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=24.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCC
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAND 66 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 66 (259)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444455555666666666655444455555555555555543
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=61.44 E-value=30 Score=22.42 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhcc
Q 036731 211 NETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEI 247 (259)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 247 (259)
+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3334444444444444333344444444444444443
No 310
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=61.10 E-value=11 Score=23.78 Aligned_cols=46 Identities=7% Similarity=0.035 Sum_probs=26.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 203 LMPSFIRKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3444444455556666666666655555566666666666666654
No 311
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=61.08 E-value=13 Score=19.84 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 036731 68 NEAEYLFIEMMDRGLQSDVVTFNVIMDEL 96 (259)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
++|.+.|.+|++..-.+...+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665443333455666666665
No 312
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.04 E-value=53 Score=25.10 Aligned_cols=78 Identities=10% Similarity=0.196 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCccchHHHHHHHHHH
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE--TSKVIELLRSMDKRNVMPYASILSIIVDLL 242 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (259)
...++.-|...++.++|.+.++++....+. ...+...+..++-+.++ .+.+.+++..+...|+-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 466777788888888888888887633221 23334444555554433 345677777777666655555444444443
Q ss_pred H
Q 036731 243 V 243 (259)
Q Consensus 243 ~ 243 (259)
.
T Consensus 299 ~ 299 (358)
T 3eiq_C 299 N 299 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=61.03 E-value=58 Score=26.00 Aligned_cols=143 Identities=10% Similarity=0.090 Sum_probs=87.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036731 99 NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQM 178 (259)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 178 (259)
..+.+-|.++-.+ .|+.-.. ..|..-...+...|++++|..+--..... +--+..|.+.+-.+=...|+.
T Consensus 342 l~n~~lA~~lA~R---~~LpGAd------~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~ 411 (494)
T 1bpo_A 342 LQNPDLALRMAVR---NNLAGAE------ELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQT 411 (494)
T ss_dssp TCCHHHHHHHHHH---TTCSSCH------HHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSC
T ss_pred cCCHHHHHHHHHh---cCCccHH------HHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCC
Confidence 3566666665543 3443322 55777788899999999999988765443 334667776666655566777
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccchHH--------HHHHHHHHHHhcccCC
Q 036731 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPYASI--------LSIIVDLLVKNEISLN 250 (259)
Q Consensus 179 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~ 250 (259)
.-.+.+|..+.+.| +.+..----+++.-...|+.+-..+++.+= .+..+.+. ....+..|.+++-..+
T Consensus 412 splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~---KL~~SEeLGDlvk~~d~~LAl~IY~~a~~~~K 487 (494)
T 1bpo_A 412 SPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED---KLECSEELGDLVKSVDPTLALSVYLRANVPNK 487 (494)
T ss_dssp CHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT---CSCCCHHHHHHHHHHCSHHHHHHHHHHCCCCC
T ss_pred CHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC---CccccHHhHhhhhhcCHHHHHHHHHHcCCcHH
Confidence 88888888888876 456544445666666778877776666532 23333221 1234455667766666
Q ss_pred cchhh
Q 036731 251 SIPQF 255 (259)
Q Consensus 251 a~~~~ 255 (259)
++..|
T Consensus 488 vi~cl 492 (494)
T 1bpo_A 488 VIQCF 492 (494)
T ss_dssp -----
T ss_pred HHHHh
Confidence 66544
No 314
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.88 E-value=44 Score=24.13 Aligned_cols=19 Identities=21% Similarity=0.006 Sum_probs=8.9
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 036731 134 IDGLCKIGKLKNARELSQS 152 (259)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~ 152 (259)
+...+..|+.+-+..+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3344455555544444443
No 315
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.76 E-value=31 Score=22.33 Aligned_cols=68 Identities=9% Similarity=0.086 Sum_probs=46.8
Q ss_pred CCchHhHHHHHHHHhhcCC---hhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 036731 48 NPNVVTYNSLIHGFCYAND---GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
.|+..+--.+.-++.+..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555555666554 4568888888887643323444445677888999999999999998875
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.66 E-value=49 Score=24.62 Aligned_cols=73 Identities=11% Similarity=0.219 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCccchHHHHHH
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE--TSKVIELLRSMDKRNVMPYASILSII 238 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 238 (259)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+.+++..+.+.|+-+.......+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 356777787888888888888887532211 12334444445544333 34566677776666655544443333
No 317
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=60.44 E-value=17 Score=23.26 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=18.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcC
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYAN 65 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 65 (259)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333333334444455554444433334444444444444333
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=58.72 E-value=22 Score=19.99 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 036731 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 179 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 211 (259)
-.+.++++.+.+.+...+..|....+..+...|
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444444433333344334444444333
No 319
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.61 E-value=57 Score=24.67 Aligned_cols=46 Identities=4% Similarity=0.125 Sum_probs=23.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 036731 161 NVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210 (259)
Q Consensus 161 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 210 (259)
|......+...|.+.+++.+|...|- .|-.++...+..++.-+...
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHh
Confidence 44445555666666666666665551 12233445554444444443
No 320
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=57.68 E-value=40 Score=22.60 Aligned_cols=163 Identities=9% Similarity=0.046 Sum_probs=85.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCch-HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh---HHHHHHHHHH-
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINPNV-VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT---FNVIMDELCK- 98 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~- 98 (259)
...++.|+++....++.. ++.... ..-.+.+...+..|+.+.-.++.+.+.+.|..++... ++.|..++..
T Consensus 11 ~~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 344678998887666643 222111 1112445556677777766778888888887766432 2333333332
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH-cCCCCChh---hHHHHHHHHH
Q 036731 99 NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKL-KNARELSQSLTR-AGLMPNVV---TYNITIHALC 173 (259)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~-~~~~~~~~---~~~~li~~~~ 173 (259)
..+.....++.+.+.+.|..++.. |..-.++.+...+..+.. ..-..+++.+.+ .|..++.. -.+ -+....
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin~~---d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~T-pL~~A~ 162 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADITAL---YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT-ALEFVK 162 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSSSC---BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCC-HHHHHH
T ss_pred CcchhhHHHHHHHHHHCCCCCCcc---CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCC-HHHHHH
Confidence 234455567778888888776542 222221222222233332 344567777777 77665533 222 233345
Q ss_pred hcCChhHHHHHHHHHHhcCCC
Q 036731 174 NDEQMDKAHDLFLDMEVKGVA 194 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~ 194 (259)
+.|+.+-+.-+.+.+.+.+++
T Consensus 163 ~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 163 RCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp TTTCHHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHHHhcc
Confidence 556655444444444444433
No 321
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=57.60 E-value=46 Score=23.30 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHcCCCCChh--hH-----HHHHHHHHhcCChhHHHHHHHHHHhc
Q 036731 143 LKNARELSQSLTRAGLMPNVV--TY-----NITIHALCNDEQMDKAHDLFLDMEVK 191 (259)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~--~~-----~~li~~~~~~~~~~~a~~~~~~~~~~ 191 (259)
++.|+.+|+.+.+.-.-++.. .. ...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 556666666665542111110 11 12233455666666666666665543
No 322
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=56.46 E-value=13 Score=28.06 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCC
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE-QMDKAHDLFLDMEVKGVAP 195 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~p 195 (259)
-...++.-|...|+.++|...++++...... ...+...+..++-+.. ..+.+..++..+.+.|+-+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 4567788888999999999998887532111 1112222222222211 2345556666676665443
No 323
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=55.83 E-value=42 Score=22.86 Aligned_cols=143 Identities=12% Similarity=0.074 Sum_probs=63.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCchHh--HHHHHHHHhhcCChhHHHHHHHHHHHcCC-CC---chhhHHHHHH
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDENINPNVVT--YNSLIHGFCYANDGNEAEYLFIEMMDRGL-QS---DVVTFNVIMD 94 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~---~~~~~~~l~~ 94 (259)
+.+...++.|+.+-+..++ +.|..++... -.+.+...+..|+.+-+..++ +.+. .+ +..-.+ .+.
T Consensus 27 t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~g~t-~L~ 97 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKRLL----EASADANIQDNMGRTPLHAAVSADAQGVFQILI----RNRATDLDARMHDGTT-PLI 97 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HBTTSCTTCCCTTCCC-HHH
T ss_pred chHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCCc-HHH
Confidence 3455666788876555544 4444443221 112334445667765544444 3332 11 122222 333
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHH
Q 036731 95 ELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV---TYNITIHA 171 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~ 171 (259)
..+..|+.+- ++.+.+.|..++.. +..-. +.+...+..|+.+-+.. +.+.|..++.. -.+. +..
T Consensus 98 ~A~~~~~~~~----~~~Ll~~g~~~~~~---~~~g~-t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~-L~~ 164 (223)
T 2f8y_A 98 LAARLAVEGM----LEDLINSHADVNAV---DDLGK-SALHWAAAVNNVDAAVV----LLKNGANKDMQNNREETP-LFL 164 (223)
T ss_dssp HHHHHTCHHH----HHHHHHTTCCTTCB---CTTSC-BHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTCCCH-HHH
T ss_pred HHHHhCcHHH----HHHHHHcCCCCcCc---CCCCC-cHHHHHHHcCCHHHHHH----HHHcCCCCCCcCCCCcCH-HHH
Confidence 3445566543 34444455544321 11112 23344455666554444 44445444322 2223 333
Q ss_pred HHhcCChhHHHHHH
Q 036731 172 LCNDEQMDKAHDLF 185 (259)
Q Consensus 172 ~~~~~~~~~a~~~~ 185 (259)
.+..|+.+-+..++
T Consensus 165 A~~~~~~~~v~~Ll 178 (223)
T 2f8y_A 165 AAREGSYETAKVLL 178 (223)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 34556654444333
No 324
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=55.69 E-value=41 Score=22.16 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=47.2
Q ss_pred HHHHHHHHH-HhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc--CCCCchhhHHHHHHHHHHcCCH
Q 036731 33 DKAKELFLQ-MKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR--GLQSDVVTFNVIMDELCKNRKM 102 (259)
Q Consensus 33 ~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 102 (259)
+.+.+-+.+ +.+.|++++. .-..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444544444 4556877655 3455667777777888999999999887 6666766666666777777654
No 325
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.42 E-value=42 Score=22.21 Aligned_cols=50 Identities=10% Similarity=0.087 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHHhhCCCCC--chHhHHHHHH-H-----HhhcCChhHHHHHHHHHHH
Q 036731 30 GFVDKAKELFLQMKDENINP--NVVTYNSLIH-G-----FCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 30 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 79 (259)
|++-+|.++++..-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665443233 3445555555 2 2345666666666665543
No 326
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.06 E-value=41 Score=22.00 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 036731 68 NEAEYLFIEMMDRGLQSD-VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119 (259)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 119 (259)
+++..+|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 458899999988876543 5567788888899999999999999998887766
No 327
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=54.77 E-value=43 Score=23.58 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=35.2
Q ss_pred HHHHhhcCChhHHHHHHHHHHHcCCCCchhh-------HHHHHHHHH--HcCCHHHHHHHHHHH
Q 036731 58 IHGFCYANDGNEAEYLFIEMMDRGLQSDVVT-------FNVIMDELC--KNRKMDEATRLLDLM 112 (259)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 112 (259)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3455678999998888888887776655332 233444432 567777666666654
No 328
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=53.84 E-value=16 Score=23.25 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=11.9
Q ss_pred HHHHhhcCChhHHHHHHHH
Q 036731 58 IHGFCYANDGNEAEYLFIE 76 (259)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~ 76 (259)
+...+..|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344566777777666655
No 329
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=53.74 E-value=16 Score=22.89 Aligned_cols=47 Identities=9% Similarity=-0.010 Sum_probs=21.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAE 71 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 71 (259)
.|...+.+++.+-|.++++-..+.| +...|..++..|...=+++-++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 3444444455555555554444443 3444444444444444444433
No 330
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=53.24 E-value=42 Score=21.51 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=38.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhH--HHHHHHHHHc
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTF--NVIMDELCKN 99 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~ 99 (259)
.+...++.|+.+.+..+++.-...-...+..-+ +.+...+..|+.+- ++.+.+.|..++.... .+.+...+..
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSV----VEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCC-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccccccCCC-CHHHHHHHcChHHH----HHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 344455677776666655432111001111111 23334445566543 3444455554432211 1233444455
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 036731 100 RKMDEATRLLDLMIQGGVRP 119 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~ 119 (259)
|+.+-+ +.+.+.|..+
T Consensus 86 ~~~~~v----~~Ll~~g~~~ 101 (165)
T 3twr_A 86 GHYEVA----ELLVKHGAVV 101 (165)
T ss_dssp TCHHHH----HHHHHTTCCT
T ss_pred CcHHHH----HHHHhCCCCC
Confidence 665533 3334444444
No 331
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=53.11 E-value=82 Score=25.85 Aligned_cols=70 Identities=9% Similarity=0.034 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHH
Q 036731 70 AEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR 147 (259)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (259)
......++..+-.--+..--.-++..|.+.|-.+.|.++++.+-..-.... ..+ ..+..|.++|+++.+.
T Consensus 500 gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g-------~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 500 KKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAH-------NII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp HHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCc-------cHH-HHHHHHHHcCChhhcc
Confidence 334444444432222445567789999999999999999998876544422 455 6777888888877653
No 332
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=52.53 E-value=37 Score=24.20 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=35.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCC-------chHhHHHHHHHHh--hcCChhHHHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINP-------NVVTYNSLIHGFC--YANDGNEAEYLFIEM 77 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~--~~~~~~~a~~~~~~~ 77 (259)
.+...++.|+.+.+..+++.....+... +..-++.|..++. +.|+.+-+..+++.-
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 4455567899999988888776665433 3334455555543 357777777666654
No 333
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=51.04 E-value=55 Score=22.18 Aligned_cols=119 Identities=13% Similarity=-0.005 Sum_probs=69.3
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHH-HHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHH
Q 036731 26 LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIH-GFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDE 104 (259)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 104 (259)
+.+-.+++.+.=+-.-+. |+..-|..|+. .+.-.|.+..++-++..+- ..+..-|.. -+|-+..++..
T Consensus 12 s~kY~dYdt~~fLsa~L~-----~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkk 80 (242)
T 3kae_A 12 SIRYRDYETAIFLAACLL-----PCKPEYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKK 80 (242)
T ss_dssp HHHTTCHHHHHHHHHHHC---------CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHH
T ss_pred HhhcccccHHHHHHHHHc-----cCChHHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHH
Confidence 345566666643333332 22224444443 3345677777766653211 112222222 35667889999
Q ss_pred HHHHHHHHHhCCCCCCCc-----------cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036731 105 ATRLLDLMIQGGVRPDAF-----------CEINIVAYGCLIDGLCKIGKLKNARELSQSLTR 155 (259)
Q Consensus 105 a~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (259)
|...++.+....+..++. .......++.+...|.+.|+.++|...+..--.
T Consensus 81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 999999998665553321 111335677888889999999999999876543
No 334
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=51.01 E-value=61 Score=22.72 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=11.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 036731 205 PSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~ 225 (259)
..|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345555666666666555543
No 335
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=50.94 E-value=85 Score=24.37 Aligned_cols=204 Identities=10% Similarity=-0.029 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCchHhH------HHHHHHHhhcCChhHHHHHHHHHHHcCCCCc--
Q 036731 15 NTVTYNTIIDGLCKEG-FVDKAKELFLQMKDENINPNVVTY------NSLIHGFCYANDGNEAEYLFIEMMDRGLQSD-- 85 (259)
Q Consensus 15 ~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 85 (259)
....-..++..+.... ..+.-.++..+..+..-. ...+| ..++..|...|++.+|..++..+.+.--..|
T Consensus 57 ~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~ 135 (394)
T 3txn_A 57 AAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK 135 (394)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc
Confidence 3445566777776643 334444444444332100 11233 3678899999999999999999886422222
Q ss_pred ---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCCccchhHHHHHHHHHHHH-hcCChHHHHHHHHHHHHc-C-
Q 036731 86 ---VVTFNVIMDELCKNRKMDEATRLLDLMIQGG--VRPDAFCEINIVAYGCLIDGLC-KIGKLKNARELSQSLTRA-G- 157 (259)
Q Consensus 86 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~- 157 (259)
...+..-+..|...+++.++...+....... +.+++ ..-......-...+. ..+++..|...|-+..+. .
T Consensus 136 ~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p--~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 136 NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP--KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH--HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 3345566778889999999999998775322 21221 001112222233345 789999999887765421 1
Q ss_pred C-CC---ChhhHHHHHHHHHhcCChhHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036731 158 L-MP---NVVTYNITIHALCNDEQMDKAHDLFL-DMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMD 224 (259)
Q Consensus 158 ~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 224 (259)
. .| +...|..+.... .++..+...++. .....-..|....+..++.++ +.+++.+...++....
T Consensus 214 ~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 214 VDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred cccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 1 11 122333332222 233333333222 211111246666666777765 5578877777776654
No 336
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=50.93 E-value=75 Score=23.74 Aligned_cols=141 Identities=15% Similarity=0.173 Sum_probs=65.7
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHH----HHHHHHhCCCCCCCccchhHH
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATR----LLDLMIQGGVRPDAFCEINIV 128 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~ 128 (259)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +++-..+.+..++ ..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~------~~ 93 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD------DI 93 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS------HH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCC------HH
Confidence 44444555555555555555543221 11233444433333 3444445555553 35
Q ss_pred HHHHHHHHHHhcCChH-HHHHHHHHHH----HcCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH
Q 036731 129 AYGCLIDGLCKIGKLK-NARELSQSLT----RAGL--MPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFT 201 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 201 (259)
....++..+.....-+ .-.++++.+. +.|- .-++.....+...|.+.+++.+|...| . .|-.-+...+.
T Consensus 94 ~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~---i-~~~~~s~~~~a 169 (312)
T 2wpv_A 94 SVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF---M-LGTHDSMIKYV 169 (312)
T ss_dssp HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH---H-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH---H-hCCCccHHHHH
Confidence 5556666655533211 1223333332 2221 124555666667777777776665443 2 22111355555
Q ss_pred HHHHHHHhc---CCHHHHHH
Q 036731 202 TLMPSFIRK---NETSKVIE 218 (259)
Q Consensus 202 ~l~~~~~~~---~~~~~a~~ 218 (259)
.++.-+... |...++--
T Consensus 170 ~~l~~w~~~~~~~~~~e~dl 189 (312)
T 2wpv_A 170 DLLWDWLCQVDDIEDSTVAE 189 (312)
T ss_dssp HHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHhcCCCCcchHHH
Confidence 555555544 55555433
No 337
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=50.72 E-value=1.1e+02 Score=25.52 Aligned_cols=119 Identities=4% Similarity=-0.033 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 036731 101 KMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDK 180 (259)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 180 (259)
+.+.|...+....+.... +. .........+.......+...++...+....... ++.......+....+.|+++.
T Consensus 229 d~~~A~~~~~~~~~~~~~-~~--~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQL-NE--DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp CHHHHHHHHHHHHHHTTC-CH--HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHhhhhccCC-CH--HHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHH
Confidence 678888888877643321 11 0011222333333344453455666666544432 344445555555667899999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 181 AHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 181 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
|...|+.|..... ......-.+.+++...|+.++|..+|..+..
T Consensus 304 a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999998876421 2344445667788889999999999988764
No 338
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=50.56 E-value=52 Score=21.81 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ--MDKAHDLFLDME 189 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~ 189 (259)
.....++.-|...++.++|...++++..... .......++......++ -+.+-.++..+.
T Consensus 11 kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 11 KTLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3566788889999999999999998763221 12223334443333333 234455666653
No 339
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=48.80 E-value=31 Score=18.76 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 036731 53 TYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKN 99 (259)
Q Consensus 53 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (259)
.++.++..++...-.++++..+.+..+.|.- +..+|-.-.+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 4566666666666677777777777776633 555555555555443
No 340
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=48.05 E-value=42 Score=20.02 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 036731 180 KAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKN 211 (259)
Q Consensus 180 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 211 (259)
.+..+.++....|+.|+..+..-++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34455555555556665555555555555444
No 341
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.70 E-value=56 Score=23.12 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=26.1
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHcCCCCchh---hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 036731 57 LIHGFCYANDGNEAEYLFIEMMDRGLQSDVV---TFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119 (259)
Q Consensus 57 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 119 (259)
.+...++.|+.+.+..++ +.|..++.. .-.+.+...+..|+.+-+ +.+.+.|..+
T Consensus 8 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~ 65 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADP 65 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC
Confidence 344556667766544444 444443321 112345555566665433 3344445444
No 342
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=47.46 E-value=83 Score=23.52 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=34.6
Q ss_pred HHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC
Q 036731 37 ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ 83 (259)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (259)
+++..+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 44555666677777777777887777777788888888888877644
No 343
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=47.13 E-value=80 Score=23.78 Aligned_cols=75 Identities=5% Similarity=0.138 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-HHHH--HHHHHH----HHhcCCHHHHHHHHH
Q 036731 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPN-CVIF--TTLMPS----FIRKNETSKVIELLR 221 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~--~~l~~~----~~~~~~~~~a~~~~~ 221 (259)
+++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|.... ...+ .+++.. .....+++++..+++
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~ 310 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQ 310 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 344455667777777777777777776677888888888887754322 2222 222221 123466666666665
Q ss_pred HH
Q 036731 222 SM 223 (259)
Q Consensus 222 ~~ 223 (259)
.+
T Consensus 311 ~~ 312 (345)
T 2qfz_A 311 NL 312 (345)
T ss_dssp SC
T ss_pred cC
Confidence 44
No 344
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=46.88 E-value=44 Score=19.93 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH-----HhcCCCCcHHHHHHH
Q 036731 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDM-----EVKGVAPNCVIFTTL 203 (259)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-----~~~~~~p~~~~~~~l 203 (259)
-.+..+.+++..-|+.|+..+...++..|...+- + +.++..+. ...|..|+..+.+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3577888888889999999999999988877664 2 33333322 234677777665544
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.50 E-value=61 Score=21.45 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHhh
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAP--NCVIFTTLMP-S-----FIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 225 (259)
|...+..+ ..|++-+|.++|+..-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33334433 3488888888888887654344 4455666666 2 2357888888888887654
No 346
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.26 E-value=1.2e+02 Score=24.67 Aligned_cols=65 Identities=9% Similarity=0.053 Sum_probs=45.7
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCC-CCch--hhH-HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL-QSDV--VTF-NVIMDELCKNRKMDEATRLLDLMIQG 115 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (259)
...+|.+++.|...+.++.|..+.....-... .++. ..| -.+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45678899999999999999999987742110 1121 122 23456677789999999998887654
No 347
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.93 E-value=54 Score=20.37 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=11.5
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 036731 95 ELCKNRKMDEATRLLDLMIQ 114 (259)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~ 114 (259)
.+...++++.|.++...+..
T Consensus 70 ~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 70 QELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666655543
No 348
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=42.89 E-value=77 Score=21.59 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=68.1
Q ss_pred HHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHH
Q 036731 58 IHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGL 137 (259)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (259)
+...+..|+.+....++..-...-..++..-.+ .+...+..|+.+-+ +.+.+.|..++. .+..-++. +...
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v----~~Ll~~g~~~~~---~~~~g~t~-L~~A 80 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIV----EFLLQLGVPVND---KDDAGWSP-LHIA 80 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHH----HHHHHTTCCSCC---CCTTSCCH-HHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHH----HHHHHhCCCCCC---cCCCCCCH-HHHH
Confidence 455677888888887776533211112222222 34445566775544 444455554432 12122222 3344
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhcC
Q 036731 138 CKIGKLKNARELSQSLTRAGLMPNV---VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCV---IFTTLMPSFIRKN 211 (259)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~ 211 (259)
+..|+.+- ++.+.+.|..++. ...+. +...+..|+.+-+..++ +.|..++.. ..+. +...+..|
T Consensus 81 ~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~~ 150 (231)
T 3aji_A 81 ASAGXDEI----VKALLVKGAHVNAVNQNGCTP-LHYAASKNRHEIAVMLL----EGGANPDAKDHYDATA-MHRAAAKG 150 (231)
T ss_dssp HHHTCHHH----HHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHHT
T ss_pred HHcCHHHH----HHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCcH-HHHHHHcC
Confidence 45566654 4444555544432 22333 33445566666544443 444444321 1222 33334566
Q ss_pred CHHHHHHHHH
Q 036731 212 ETSKVIELLR 221 (259)
Q Consensus 212 ~~~~a~~~~~ 221 (259)
+.+-+..+++
T Consensus 151 ~~~~v~~Ll~ 160 (231)
T 3aji_A 151 NLKMVHILLF 160 (231)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 7665554443
No 349
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=42.77 E-value=79 Score=25.14 Aligned_cols=69 Identities=7% Similarity=-0.023 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CCccchhHHHHH-HHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 88 TFNVIMDELCKNRKMDEATRLLDLMIQGGVRP--DAFCEINIVAYG-CLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
..+.+++.|.+.+....+..++..+...+..| +.+......+|. -+...+...+++.+|.+.+.+....
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 46778899999999999999999998766522 222233445555 3455667888999999888776553
No 350
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=42.59 E-value=99 Score=22.76 Aligned_cols=106 Identities=9% Similarity=-0.003 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHH
Q 036731 107 RLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPN---VVTYNITIHALCNDEQMDKAHD 183 (259)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~ 183 (259)
.+.+.+.+.|..++.. +..-. +.+...+..|..+.+..+++. .|..++ ..-.+.|..+ +..|+.+-
T Consensus 220 ~i~~lLl~~gad~n~~---d~~g~-t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~i--- 288 (337)
T 4g8k_A 220 AITHLLLDHGADVNVR---GERGK-TPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKKI--- 288 (337)
T ss_dssp HHHHHHHHTTCCTTCC---CGGGC-CHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHHH---
T ss_pred HHHHHHHHCCCCCCCc---CCCCC-CHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHHH---
Confidence 3444455666555421 11222 233445566666655544331 222222 2223333333 45566543
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCccc
Q 036731 184 LFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLRSMDKRNVMPY 231 (259)
Q Consensus 184 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (259)
.+.+.+.|..++..+ . +...++.|+.+- ++.+++.|-.||
T Consensus 289 -v~~Ll~~GAd~n~~~--~-L~~A~~~~~~~i----v~~Ll~~GA~~d 328 (337)
T 4g8k_A 289 -AELLCKRGASTDCGD--L-VMTARRNYDHSL----VKVLLSHGAKED 328 (337)
T ss_dssp -HHHHHTTSCSSTTCC--H-HHHHHHTTCHHH----HHHHHHTTCCC-
T ss_pred -HHHHHHCCCCCCCCC--H-HHHHHHcCCHHH----HHHHHHCcCCCC
Confidence 344456676666544 2 333345566543 344455554444
No 351
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=41.86 E-value=81 Score=21.53 Aligned_cols=191 Identities=11% Similarity=-0.042 Sum_probs=90.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC----CCCchhhHHHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG----LQSDVVTFNVIMDELC 97 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~ 97 (259)
.+...++.|+.+.+..+++.-...--..|..-++. +...+..|+.+-+..+++.-.... ...+..-. +.+...+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~-t~L~~A~ 83 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETA-LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ-TALHIAV 83 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC-CHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc-CHHHHHH
Confidence 35556678888777777664111101123333333 334455677666555554322110 00111222 2344445
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccch----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---h
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEI----------NIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV---T 164 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 164 (259)
..|+.+-+.. +.+.|..++..... +..-.+ .+...+..|+.+-+. .+.+.|..++.. -
T Consensus 84 ~~~~~~~v~~----Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~----~Ll~~ga~~~~~d~~g 154 (232)
T 2rfa_A 84 INQNVNLVRA----LLARGASVSARATGSVFHYRPHNLIYYGEH-PLSFAACVGSEEIVR----LLIEHGADIRAQDSLG 154 (232)
T ss_dssp HTTCHHHHHH----HHHTTCCTTCCCCSGGGSCCTTCSCCCCSS-HHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTS
T ss_pred HcCCHHHHHH----HHhCCCCCCcccCCcceeecccccccCCCC-HHHHHHHcCCHHHHH----HHHHCCCCCCCCCCCC
Confidence 5677654433 33444443321000 001122 233334456655444 344455544422 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036731 165 YNITIHALCNDEQMDKAHDLFLDMEVKGVAP---------NCVIFTTLMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 165 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
.+ .+...+..|+.+-+..+++.+.+.|..+ |..-.+. +...++.|+.+-+..+++.-..
T Consensus 155 ~t-~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 155 NT-VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp CC-HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCcc
Confidence 23 3444567788887777777777776433 2333333 3344567787777666665443
No 352
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.23 E-value=54 Score=22.53 Aligned_cols=172 Identities=12% Similarity=0.034 Sum_probs=73.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCch---HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh--HHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNV---VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVIMDEL 96 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 96 (259)
.+...+..|+.+-+..+ .+.|..++. .-++ .+...+..|+.+-+. .+.+.|..++... -.+.+...
T Consensus 14 ~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHML----VQAGANIDTCSEDQRT-PLMEAAENNHLEAVK----YLIKAGALVDPKDAEGSTCLHLA 84 (237)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHH----HHHTTTCCCCCCCTTSCCHHHHH
T ss_pred HHHHHHHcCcHHHHHHH----HHcCCCcCccCCCCCC-HHHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHH
Confidence 34555667777544444 444444432 1222 334445567665443 4445554443211 12234445
Q ss_pred HHcCCHHHHHHHHHHHHhCC-CCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHH
Q 036731 97 CKNRKMDEATRLLDLMIQGG-VRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV---TYNITIHAL 172 (259)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~ 172 (259)
+..|+.+-+ +.+.+.+ ..++. .+..-. ..+...+..|+.+- ++.+.+.|..++.. ..+ .+...
T Consensus 85 ~~~~~~~~~----~~Ll~~~~~~~~~---~~~~g~-t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t-~L~~A 151 (237)
T 3b7b_A 85 AKKGHYEVV----QYLLSNGQMDVNC---QDDGGW-TPMIWATEYKHVDL----VKLLLSKGSDINIRDNEENI-CLHWA 151 (237)
T ss_dssp HHTTCHHHH----HHHHTTTCCCTTC---CCTTSC-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCC-HHHHH
T ss_pred HHcCCHHHH----HHHHhCCCCCccc---CCCCCC-CHHHHHHHcCCHHH----HHHHHHCCCCCCccCCCCCC-HHHHH
Confidence 566665543 3344443 22211 011112 22334445566543 34444455443322 122 23334
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhcCCHHHHHHHH
Q 036731 173 CNDEQMDKAHDLFLDMEVKGVAPNCV---IFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
+..|+.+- .+.+.+.|..++.. -.+ .+...++.|+.+-+.-++
T Consensus 152 ~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll 197 (237)
T 3b7b_A 152 AFSGCVDI----AEILLAAKCDLHAVNIHGDS-PLHIAARENRYDCVVLFL 197 (237)
T ss_dssp HHHCCHHH----HHHHHTTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred HHCCCHHH----HHHHHHcCCCCCCcCCCCCC-HHHHHHHhCCHhHHHHHH
Confidence 45566543 33444555444321 122 233344566665544443
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.25 E-value=2e+02 Score=25.51 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=66.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCC-----------------
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS----------------- 84 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 84 (259)
++..+...|.++-|.++...+ +-+...--.+..+|...|++++|...|++... |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 556666777776665544333 22333335577788899999999999976531 2211
Q ss_pred ------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcC
Q 036731 85 ------DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIG 141 (259)
Q Consensus 85 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (259)
...-|..++..+-+.+.++.+.++-+...+.- .++. .......|+.+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~-~~dd-~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDD-EDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CSCC-HHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccCC-ccchHHHHHHHHHHHhhCC
Confidence 11246677777778888888877777666542 2221 1123346666666665543
No 354
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=39.59 E-value=1.2e+02 Score=22.70 Aligned_cols=76 Identities=11% Similarity=0.207 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH----HHhcCCHHHHHHHHHHH
Q 036731 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPS----FIRKNETSKVIELLRSM 223 (259)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~~~~~~a~~~~~~~ 223 (259)
++++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|...-..+..+++.. .....++++..+.++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 45666778889988889999999888877899999999999888754222222223322 22345777777777663
No 355
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=39.57 E-value=1.1e+02 Score=22.53 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=27.0
Q ss_pred HHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCC
Q 036731 39 FLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGL 82 (259)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 82 (259)
+..+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|.
T Consensus 177 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 177 HSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 33344456666666666666666665566677777776666653
No 356
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.74 E-value=1.2e+02 Score=22.62 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHHH
Q 036731 207 FIRKNETSKVIELLRS 222 (259)
Q Consensus 207 ~~~~~~~~~a~~~~~~ 222 (259)
.+..|..+-+.-+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3455777666666654
No 357
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=38.21 E-value=79 Score=20.32 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=9.7
Q ss_pred HHHHhcCChHHHHHHHHH
Q 036731 24 DGLCKEGFVDKAKELFLQ 41 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~ 41 (259)
...++.|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (172)
T 3v30_A 7 HQLAAQGELDQLKEHLRK 24 (172)
T ss_dssp HHHHHTTCHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 344556666655555543
No 358
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=38.10 E-value=1e+02 Score=21.53 Aligned_cols=23 Identities=9% Similarity=-0.198 Sum_probs=11.7
Q ss_pred HhhcCChhHHHHHHHHHHHcCCC
Q 036731 61 FCYANDGNEAEYLFIEMMDRGLQ 83 (259)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~ 83 (259)
.+..|+.+.+..+++.+.+.|..
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Confidence 34455555555555555544433
No 359
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.07 E-value=83 Score=20.57 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 036731 67 GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRP 119 (259)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 119 (259)
.+.+..+++.+.+.|.--|...-...+....+.|. ....+-.++.+.|+..
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHcCCCH
Confidence 34455666667777766555544555555555442 2345566666777653
No 360
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=37.85 E-value=76 Score=21.64 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (259)
+.....++.+.++.. +.+-.-.-..|.++...|++++|.++..++... +..... ..+.+++.-|.-++.
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~ 82 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLT 82 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHH
Confidence 344555555555543 123333445678888888888888888887654 111222 455677766666555
Q ss_pred HH
Q 036731 222 SM 223 (259)
Q Consensus 222 ~~ 223 (259)
..
T Consensus 83 K~ 84 (192)
T 1ixm_A 83 FN 84 (192)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 361
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=37.51 E-value=1.3e+02 Score=22.50 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHh--HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHH
Q 036731 14 PNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVT--YNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNV 91 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (259)
.|..-++. +...+..|+.+.+..+++ .|..++... -.+.+...+..|+.+-+. .+.+.|..++...-.+
T Consensus 16 ~d~~g~t~-L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEK-IHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAK----YLASVGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHH-HHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBC
T ss_pred cCCCCCCH-HHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHH----HHHHCCCCccccCCCC
Confidence 35555554 455556788766665554 454443321 122344455667765544 4444554444422333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGV 117 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~ 117 (259)
.+...+..|+.+-+..+++.....+.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCC
Confidence 55556677888877777766444343
No 362
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.05 E-value=1e+02 Score=21.43 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=37.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCch-------HhHHHHHHHHhhc---CChhHHHHHHHHHHH
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDENINPNV-------VTYNSLIHGFCYA---NDGNEAEYLFIEMMD 79 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~---~~~~~a~~~~~~~~~ 79 (259)
+.+...++.|+.+.+..+++.+.+.|..++. .-.+.|.. .+.. |+.+-+..+++.-..
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHHTCBTTBCTTHHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHHccccchHHHHHHHHhcCCc
Confidence 3456667889999888888888777665543 33344443 3444 777777777765443
No 363
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=36.80 E-value=26 Score=21.88 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=44.2
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRL 108 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 108 (259)
...|.-.|...+..++.+-|.++++-..+.| +...|..++-.|...=+++-++++
T Consensus 32 DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 32 DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3456667788888999999999999998876 677788888888888787777655
No 364
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=36.51 E-value=2.4e+02 Score=26.22 Aligned_cols=35 Identities=6% Similarity=-0.066 Sum_probs=17.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 036731 174 NDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRK 210 (259)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 210 (259)
..+++-.|++++.++.+. +|+...|..++..+...
T Consensus 1296 ~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGAL 1330 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHc
Confidence 455555555555555554 34555555554444333
No 365
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=36.34 E-value=67 Score=21.58 Aligned_cols=53 Identities=17% Similarity=0.112 Sum_probs=40.4
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCH
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (259)
|....++.++..++.-.-++.++..+.+....|. .+..+|---++.+++..-+
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 3455678999999998999999999999998875 4667777667766664433
No 366
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=36.06 E-value=1.1e+02 Score=22.97 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=29.4
Q ss_pred HHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcC
Q 036731 38 LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRG 81 (259)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 81 (259)
++..+.+.|+.|...++.-++..+.+.=.++.+..+|+.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 33444555777777777777777766666777777777777665
No 367
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=35.96 E-value=1.2e+02 Score=24.14 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCch--------HhHH-HHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 18 TYNTIIDGLCKEGFVDKAKELFLQMKDENINPNV--------VTYN-SLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 18 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~-~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
..|.++..|.+.++.+.+..+++.+...+..|+. .+|. -+.+.+...+++.+|.+-+....+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4566778888888888888888877766553222 2232 3345556777888887777766544
No 368
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=35.42 E-value=1e+02 Score=20.85 Aligned_cols=177 Identities=11% Similarity=0.056 Sum_probs=81.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCch------hhHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDV------VTFNVIMDE 95 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~ 95 (259)
.+...++.|+.+.+..+++.-.......+..-.+.| ...+..|+.+- ++.+.+.|..++. .-++ .+..
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~g~t-~L~~ 78 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL-HWSVSFQAHEI----TSFLLSKMENVNLDDYPDDSGWT-PFHI 78 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTCTTCCGGGCCCTTSCC-HHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHH-HHHHHcCCHHH----HHHHHhccccccccccCCCCCCC-HHHH
Confidence 355667788888887777664332212233333333 34455666654 4444455522222 2223 3444
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHH
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVV---TYNITIHAL 172 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~ 172 (259)
.+..|+.+ +++.+.+.|..++.. ..+..-.+ .+...+..|+.+-+. .+.+.|..++.. -.+ .+...
T Consensus 79 A~~~~~~~----~~~~Ll~~g~~~~~~-~~~~~g~t-~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t-~L~~A 147 (228)
T 2dzn_A 79 ACSVGNLE----VVKSLYDRPLKPDLN-KITNQGVT-CLHLAVGKKWFEVSQ----FLIENGASVRIKDKFNQI-PLHRA 147 (228)
T ss_dssp HHHHCCHH----HHHHHHSSSSCCCTT-CCCTTCCC-HHHHHHHTTCHHHHH----HHHHTTCCSCCCCTTSCC-HHHHH
T ss_pred HHHcCCHH----HHHHHHhCCCCcccc-cCCcCCCC-HHHHHHHcCCHhHHH----HHHHcCCCccccCCCCCC-HHHHH
Confidence 45566655 444455555222110 00112222 233444566665444 444455544322 222 33444
Q ss_pred HhcCChhHHHHHHHHHHhcC-CCCc---HHHHHHHHHHHHhcCCHHHHHHHH
Q 036731 173 CNDEQMDKAHDLFLDMEVKG-VAPN---CVIFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~-~~p~---~~~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
+..|+.+-+.. +.+.| ..++ ..-.+. +...+..|+.+-+..++
T Consensus 148 ~~~~~~~~v~~----Ll~~g~~~~~~~d~~g~t~-L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 148 ASVGSLKLIEL----LCGLGKSAVNWQDKQGWTP-LFHALAEGHGDAAVLLV 194 (228)
T ss_dssp HHTTCHHHHHH----HHTTTCCCSCCCCTTSCCH-HHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHHH----HHhcCcccccCcCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 56666654433 34444 2222 222223 33345667776666665
No 369
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.15 E-value=1.1e+02 Score=21.14 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=10.1
Q ss_pred cCChHHHHHHHHHHhhCC
Q 036731 29 EGFVDKAKELFLQMKDEN 46 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~ 46 (259)
..+.+.|+-++-+|.+.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 455555555555555555
No 370
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=33.59 E-value=61 Score=24.36 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 036731 149 LSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKG 192 (259)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 192 (259)
+++.+.+.|+.|...++..++..+.+.=.++.+..+|+-+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 45556677888888888888888887778889999999888776
No 371
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=33.00 E-value=1e+02 Score=21.26 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=14.9
Q ss_pred HHHHhhcCChhHHHHHHHHHHHc
Q 036731 58 IHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 58 i~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
+..|.+.|.+++|.+++++....
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHccchHHHHHHHHHHhcC
Confidence 34577777777777777775443
No 372
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.88 E-value=2e+02 Score=23.41 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-ccchh-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 86 VVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDA-FCEIN-IVAYGCLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
...+|.+++.|...+.++.|..+..+.. .|.. ....- ..-+--+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4678889999999999999999998774 2221 00011 222334566777889999999999887764
No 373
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.37 E-value=2.1e+02 Score=23.55 Aligned_cols=53 Identities=6% Similarity=-0.047 Sum_probs=24.4
Q ss_pred hHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHH
Q 036731 51 VVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEA 105 (259)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 105 (259)
..--..++..|.+.|-.+.|.++++.+-..-.. +...+ ..+..|+++|+++.+
T Consensus 516 ndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 516 NDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 445677888999999999999999988765433 44445 677788888887764
No 374
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.72 E-value=48 Score=17.58 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=14.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCccc
Q 036731 209 RKNETSKVIELLRSMDKRNVMPY 231 (259)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~ 231 (259)
..|+.+.|...+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35667777777766665555544
No 375
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.69 E-value=1.1e+02 Score=20.01 Aligned_cols=102 Identities=8% Similarity=-0.049 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (259)
..+....++..+.+.|.--|...-..++....+.| .....+-.++...|+.++ +....+..+.. ...+.|.+++.
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~--~i~~al~~~~~-d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE--ATEKAMREADI-DWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH--HHHHHHHHHCC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH--HHHHHHHHcCH-hHHHHHHHHHH
Confidence 34567788888888887755555556666665544 245577788888988543 33333333322 33445666655
Q ss_pred HHhhCCCccchHHHHHHHHHHHHhccc
Q 036731 222 SMDKRNVMPYASILSIIVDLLVKNEIS 248 (259)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~g~~ 248 (259)
.-.....+++......++..+.+.|-.
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrGF~ 146 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRGYL 146 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTTCC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 432222234556677888888888855
No 376
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=31.52 E-value=74 Score=18.05 Aligned_cols=32 Identities=19% Similarity=0.036 Sum_probs=19.9
Q ss_pred CCCCchHhHHHHHHHHhhcCChhHHHHHHHHH
Q 036731 46 NINPNVVTYNSLIHGFCYANDGNEAEYLFIEM 77 (259)
Q Consensus 46 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 77 (259)
+++|++.||+.+...+-+..-..++..+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 56778888888776655554445555554443
No 377
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=31.46 E-value=1.6e+02 Score=21.75 Aligned_cols=74 Identities=7% Similarity=0.101 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH---HhcCCHHHHHHHHH
Q 036731 148 ELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSF---IRKNETSKVIELLR 221 (259)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~a~~~~~ 221 (259)
++++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|...-..+..+++..+ .-..++++..+.++
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~ 251 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355566777899889999999998888778999999999998886432112222222211 11247777777775
No 378
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.32 E-value=83 Score=18.53 Aligned_cols=66 Identities=21% Similarity=0.132 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHH
Q 036731 72 YLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAREL 149 (259)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (259)
.+++.+.+.|+- +......+-. .......+.|.++++.+...|. .+|..++.++...|+...|..+
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~----------~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGS----------QALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCT----------THHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcCh----------HHHHHHHHHHHHcCcHHHHHHH
Confidence 366667766644 2222222211 1011467899999999887654 6899999999877776655443
No 379
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=30.77 E-value=3.3e+02 Score=25.35 Aligned_cols=76 Identities=5% Similarity=0.057 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhCCCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036731 33 DKAKELFLQMKDENINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDL 111 (259)
Q Consensus 33 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 111 (259)
+...+.|.++.+- +.+ |.......+.-....+++..|++++.++.+. +|+...|..++..+...|- +....+.++
T Consensus 1266 ~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~w-~h~~~~~~~ 1341 (1354)
T 3lxu_X 1266 AEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALGH-EHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcCC-HHHHHHHHh
Confidence 3445555555544 222 2222222333334678999999999999877 4677888888777766653 333344443
Q ss_pred H
Q 036731 112 M 112 (259)
Q Consensus 112 ~ 112 (259)
+
T Consensus 1342 ~ 1342 (1354)
T 3lxu_X 1342 M 1342 (1354)
T ss_dssp H
T ss_pred h
Confidence 3
No 380
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.76 E-value=2.1e+02 Score=22.99 Aligned_cols=112 Identities=10% Similarity=0.054 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 036731 30 GFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLL 109 (259)
Q Consensus 30 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 109 (259)
.+.+-|.++-.+ .|++--...|..-...+...|++++|.++-....+ |+-.+..|.+.+-.+=...|+..-.+.+|
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 555555554433 35555556666667777777888777776544432 34445555555444444445555556666
Q ss_pred HHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036731 110 DLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQS 152 (259)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (259)
..+.+.|.- +..--.-+++.-...|+.+...+.+.+
T Consensus 419 ~~Ll~~g~L-------n~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 419 GILLDQGQL-------NKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHSCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhccCcc-------chHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 666554421 223333444555555666555555554
No 381
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=30.75 E-value=1.4e+02 Score=20.89 Aligned_cols=14 Identities=7% Similarity=-0.100 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhcCC
Q 036731 199 IFTTLMPSFIRKNE 212 (259)
Q Consensus 199 ~~~~l~~~~~~~~~ 212 (259)
...-++..+.+.|-
T Consensus 181 ~k~K~~~~L~rrGF 194 (221)
T 3d5l_A 181 REQKVQQGLTTKGF 194 (221)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 34455555555554
No 382
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.67 E-value=2e+02 Score=22.71 Aligned_cols=28 Identities=14% Similarity=-0.059 Sum_probs=14.0
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHH
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMM 78 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 78 (259)
.+......+... ..|+...++.+++.+.
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMA 219 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 344444444443 3456666665555554
No 383
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=30.65 E-value=1.6e+02 Score=21.61 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=72.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCch---HhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh--HHHHHHHHH
Q 036731 23 IDGLCKEGFVDKAKELFLQMKDENINPNV---VTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVIMDELC 97 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 97 (259)
+...++.|+.+-+..++++ .|..++. .-.+.+..+.. .+.......+.+.+.+.|..++... -.+.+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~-~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHH-HSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHH-HcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 3444567777655554433 2333322 12222322222 2222333345555667776654321 123455566
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 036731 98 KNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQ 177 (259)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 177 (259)
..|..+.+..++. ..+..++. .|..-.+.| ...++.|+.+ +.+.+.+.|..++..+ .+...++.|+
T Consensus 248 ~~~~~~~v~~Ll~---~~~~~vn~---~d~~G~TpL-~~A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~ 313 (337)
T 4g8k_A 248 EKKHLGLVQRLLE---QEHIEIND---TDSDGKTAL-LLAVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYD 313 (337)
T ss_dssp HTTCHHHHHHHHT---STTCCTTC---BCTTSCBHH-HHHHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTC
T ss_pred HhhhhHHHHHHHH---hcCCcccC---cCCCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCC
Confidence 7777766554432 12333321 111222233 3344566654 4455567787777655 3334455666
Q ss_pred hhHHHHHHHHHHhcCCCCcH
Q 036731 178 MDKAHDLFLDMEVKGVAPNC 197 (259)
Q Consensus 178 ~~~a~~~~~~~~~~~~~p~~ 197 (259)
.+ +.+-+.+.|-.||.
T Consensus 314 ~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 314 HS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HH----HHHHHHHTTCCC--
T ss_pred HH----HHHHHHHCcCCCCC
Confidence 54 44556677776664
No 384
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.59 E-value=1e+02 Score=20.75 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=41.9
Q ss_pred cccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhh
Q 036731 11 VCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCY 63 (259)
Q Consensus 11 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 63 (259)
.+.|....++.++..++...-.+.++-.+.++...|. .+..+|---++.+++
T Consensus 106 ~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 106 IAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELAR 157 (174)
T ss_dssp TEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3456667789999999999999999999999999884 577777766666655
No 385
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.50 E-value=3e+02 Score=24.39 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=68.4
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-cchhHHHHHHHHH
Q 036731 57 LIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAF-CEINIVAYGCLID 135 (259)
Q Consensus 57 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 135 (259)
++..+...|.++-|.++. .. .+.++..--.+..+|...|++++|...|++.- .|+..... ...+ .
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~-~------- 881 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL-R------- 881 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG-H-------
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch-h-------
Confidence 455556666666554432 22 23344444457788999999999999998753 23322210 0000 0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHhcC
Q 036731 136 GLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC----VIFTTLMPSFIRKN 211 (259)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~ 211 (259)
....++..... ......-|..++..+.+.+.++.+.++-+...+.--.-|. ..|..++++.+..|
T Consensus 882 ---------~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 882 ---------EFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ---------HHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---------hhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01111111100 0112235677777888888888887777776654111122 34666666655443
No 386
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.25 E-value=1.1e+02 Score=19.06 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHc
Q 036731 37 ELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDR 80 (259)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 80 (259)
-+|+.+....+.|+...--.-+..+...++++.|.++...+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 34555555556555444344445567889999999999888764
No 387
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=29.18 E-value=1e+02 Score=18.91 Aligned_cols=76 Identities=9% Similarity=-0.009 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEV-KGVAPNCVIFTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (259)
.+.+|+.-+++.... .+|......++..+.. -++.++++.+...+ .|+ .+.++.-.+....+.|-.+.. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 456777777776544 3455555555555443 24556666665553 355 345666666666666665444 344
Q ss_pred HHHh
Q 036731 221 RSMD 224 (259)
Q Consensus 221 ~~~~ 224 (259)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 388
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.96 E-value=3e+02 Score=24.24 Aligned_cols=158 Identities=13% Similarity=0.060 Sum_probs=85.1
Q ss_pred HHHHHHHhhcCCh---hHHHHHHHHHHHcC----CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhH
Q 036731 55 NSLIHGFCYANDG---NEAEYLFIEMMDRG----LQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINI 127 (259)
Q Consensus 55 ~~li~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
..++...|..|.. +.|.+.|+.....+ ++||.. ..+...-.+.|..++-..++++..... +.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---------~~ 758 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---------LV 758 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---------SH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---------CH
Confidence 3456667777764 45777777766432 455543 223333445677666666777776543 22
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHh---cCCCCcHHHHHH
Q 036731 128 VAYGCLIDGLCKIGKLKNARELSQSLTRAG-LMPNVVTYNITIHALCN-DEQMDKAHDLFLDMEV---KGVAPNCVIFTT 202 (259)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~---~~~~p~~~~~~~ 202 (259)
.--..++.+++...+.+...++++.....+ +++ ..... ++.+... ....+.|++.+.+=-+ .........+..
T Consensus 759 ~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~ 836 (909)
T 4fke_A 759 NEADKLRSALACSNEVWLLNRYLGYTLNPDLIRK-QDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSN 836 (909)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCch-hhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 455678888888888888888887766543 332 22333 3333332 2223445555543211 112233345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 036731 203 LMPSFIRKNETSKVIELLRSMDK 225 (259)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~~~~ 225 (259)
++......-.-++-.+-++...+
T Consensus 837 ~i~~~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 837 LIQGVTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Confidence 77766655444444444454443
No 389
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=28.89 E-value=1.5e+02 Score=20.71 Aligned_cols=16 Identities=6% Similarity=0.000 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhCCCC
Q 036731 103 DEATRLLDLMIQGGVR 118 (259)
Q Consensus 103 ~~a~~~~~~~~~~~~~ 118 (259)
+....+++.+.+.|.-
T Consensus 93 e~i~~vl~~L~~~g~l 108 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLI 108 (221)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3344445555555443
No 390
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.80 E-value=99 Score=21.36 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 036731 132 CLIDGLCKIGKLKNARELSQSLTRA 156 (259)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (259)
..+..|.+.|.+++|..++++....
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHccchHHHHHHHHHHhcC
Confidence 3456688888888888888886544
No 391
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=28.28 E-value=1.9e+02 Score=21.71 Aligned_cols=46 Identities=2% Similarity=-0.115 Sum_probs=34.3
Q ss_pred HHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC
Q 036731 38 LFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ 83 (259)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (259)
++..+.+.|+.|...++.-++..+.+.=.++.+..+|+.+...|..
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~ 276 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDG 276 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCC
Confidence 3344455677777777778888888777888899999988877644
No 392
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.13 E-value=1.4e+02 Score=20.24 Aligned_cols=24 Identities=4% Similarity=-0.020 Sum_probs=13.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC
Q 036731 205 PSFIRKNETSKVIELLRSMDKRNV 228 (259)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~ 228 (259)
...+..|+.+.+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334556777766666666655543
No 393
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.56 E-value=3.2e+02 Score=24.08 Aligned_cols=158 Identities=14% Similarity=0.140 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHhhC----CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHH
Q 036731 20 NTIIDGLCKEGF---VDKAKELFLQMKDE----NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVI 92 (259)
Q Consensus 20 ~~ll~~~~~~~~---~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 92 (259)
..++...|+.|. .+.|.+.|+..... .++||.. ..+.....+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 346677777776 45678888877653 2455543 333344456677777677777776653 33344668
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCCCccchhHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH---cCCCCChhhHHH
Q 036731 93 MDELCKNRKMDEATRLLDLMIQGG-VRPDAFCEINIVAYGCLIDGLCKIG-KLKNARELSQSLTR---AGLMPNVVTYNI 167 (259)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~~~~~ 167 (259)
+.+++...+.....++++.....+ +++. ... .++.+..... ..+.|.+.+.+=-+ .........+..
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-------d~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~ 836 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-------DAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSN 836 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-------GHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-------hHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 888888888888888877665432 2221 222 2333333321 12333343332111 112234456778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 036731 168 TIHALCNDEQMDKAHDLFLDMEV 190 (259)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~ 190 (259)
++......-.-++-.+-++...+
T Consensus 837 ~i~~~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 837 LIQGVTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Confidence 88777665544444444555443
No 394
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=27.52 E-value=1.3e+02 Score=19.49 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=38.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh--HHHHHHHHHHcCC
Q 036731 24 DGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVIMDELCKNRK 101 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 101 (259)
...++.|+.+.+..+++.-...--..+..-++. +...+..|+.+- ++.+.+.|..++... -.+.+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSP-LHWACREGRSAV----VEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp HHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhcCcccccccCCCCCCH-HHHHHHcCcHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 344567777777666654221101122222233 334455666543 344445555544321 1123444455566
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 036731 102 MDEATRLLDLMIQGGVRP 119 (259)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~ 119 (259)
.+- .+.+.+.|..+
T Consensus 85 ~~~----v~~Ll~~g~~~ 98 (179)
T 3f6q_A 85 RDI----VQKLLQYKADI 98 (179)
T ss_dssp HHH----HHHHHHTTCCT
T ss_pred HHH----HHHHHHcCCCC
Confidence 543 33344445444
No 395
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.27 E-value=71 Score=16.87 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=16.4
Q ss_pred cCChHHHHHHHHHHhhCC-CCCch
Q 036731 29 EGFVDKAKELFLQMKDEN-INPNV 51 (259)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~-~~~~~ 51 (259)
.-+++.|...|.++...| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 347889999999987654 55543
No 396
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=26.61 E-value=1.7e+02 Score=20.53 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=9.9
Q ss_pred HHHHHhcCChHHHHHHHH
Q 036731 23 IDGLCKEGFVDKAKELFL 40 (259)
Q Consensus 23 l~~~~~~~~~~~a~~~~~ 40 (259)
+...++.|+.+.+..+++
T Consensus 7 L~~A~~~g~~~~v~~Ll~ 24 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLIS 24 (261)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 445556677655544443
No 397
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.19 E-value=1.7e+02 Score=20.43 Aligned_cols=36 Identities=11% Similarity=0.269 Sum_probs=18.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 036731 63 YANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (259)
+..+.+.|+-++.+|.+.|-.|....-..++-+.-.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 345666666666666666555444433333333333
No 398
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.83 E-value=3e+02 Score=23.22 Aligned_cols=227 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred CcccccccccCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC
Q 036731 4 GNREFGVVCKPNTVTYNTIIDGLCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQ 83 (259)
Q Consensus 4 a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (259)
..+.|.. .....+.-.|+++.|.+.+-.. ...+...+...+..|.-.+- -+.+......
T Consensus 292 Ge~~F~~----------lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~ 350 (661)
T 2qx5_A 292 GPSRFSN----------YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKP 350 (661)
T ss_dssp CGGGGTT----------CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC--------------------
T ss_pred hhhhhhh----------HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCC
Q ss_pred CchhhHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHH-----------HH
Q 036731 84 SDVVTFNVIMDELCK---NRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNAR-----------EL 149 (259)
Q Consensus 84 ~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~ 149 (259)
-...-+..||..|.+ ..+...|.+.|--+ .....++. -...+.++-......++++.-+ -+
T Consensus 351 ~~~lN~arLI~~Yt~~F~~td~~~Al~Y~~li-~l~~g~~~----~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~ 425 (661)
T 2qx5_A 351 KRDIRFANILANYTKSFRYSDPRVAVEYLVLI-TLNEGPTD----VELCHEALRELVLETKEFTVLLGKIGRDGARIPGV 425 (661)
T ss_dssp ----CHHHHHHHHHTTTTTTCHHHHHHHHHGG-GGSCCHHH----HHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCH
T ss_pred cccccHHHHHHHHHHHhhcCCHHHHHHHHHHH-hccCCchH----HHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcch
Q ss_pred HHHHHHcCCCCCh------hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-----------
Q 036731 150 SQSLTRAGLMPNV------VTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNE----------- 212 (259)
Q Consensus 150 ~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------- 212 (259)
+++.... +..+. ........-+...|++++|..+|.-..+. .--....+.++.-....-.
T Consensus 426 i~~~~~l-i~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~ 502 (661)
T 2qx5_A 426 IEERQPL-LHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEY--DIVITLVNSLLSDTLSASDLDQPLVGPDDN 502 (661)
T ss_dssp HHHTCGG-GTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHSCTTSCSSCSSCC
T ss_pred HHHhhcc-cccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhccccccccccccccc
Q ss_pred ----HHHHHHHHHHHhhCC----------CccchHHHHHHHHHH--HHhcccCCcchhhhccC
Q 036731 213 ----TSKVIELLRSMDKRN----------VMPYASILSIIVDLL--VKNEISLNSIPQFNRQK 259 (259)
Q Consensus 213 ----~~~a~~~~~~~~~~~----------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~k 259 (259)
+....+-+.++-+.+ ...+......++..+ ...|++++|++.+++++
T Consensus 503 ~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 503 SETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp TTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred ccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
No 399
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=25.79 E-value=1.5e+02 Score=19.62 Aligned_cols=21 Identities=10% Similarity=0.321 Sum_probs=8.7
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 036731 168 TIHALCNDEQMDKAHDLFLDM 188 (259)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~ 188 (259)
++.-|...++.++|...++++
T Consensus 16 ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 16 IIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 333344444444444444443
No 400
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=25.58 E-value=64 Score=22.82 Aligned_cols=66 Identities=9% Similarity=0.111 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhcC---------ChHHHHHHHHHHhhCCCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEG---------FVDKAKELFLQMKDENINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 79 (259)
....-|..+..+|++.| +.+.-.++++..++.|++. =++.|.++|+--.-.-+++++.+++..+++
T Consensus 171 ~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 171 KHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 34555666667776665 3445555555555555432 234555666544444456666666665543
No 401
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=25.35 E-value=66 Score=23.05 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHhcC---------ChHHHHHHHHHHhhCCCCC-chHhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 036731 14 PNTVTYNTIIDGLCKEG---------FVDKAKELFLQMKDENINP-NVVTYNSLIHGFCYANDGNEAEYLFIEMMD 79 (259)
Q Consensus 14 ~~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 79 (259)
....-|..+..+|++.| +.+.-.++++..++.|++. =++.|.++|+--.-.-+++++.+++..+++
T Consensus 194 ~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 194 AHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIIDKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp TTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 44555666777777665 3455556666666665542 234566666544444456666666665543
No 402
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=24.82 E-value=1.7e+02 Score=20.82 Aligned_cols=146 Identities=12% Similarity=0.022 Sum_probs=61.6
Q ss_pred HHhhcCChhHHHHHHHHHHHcCC-CC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHH
Q 036731 60 GFCYANDGNEAEYLFIEMMDRGL-QS---DVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLID 135 (259)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (259)
..+..|+.+-+..++ +.|. .+ +..-++.+..++........-.+++..+.+.|..+.. .+..-. +.+.
T Consensus 117 ~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~---~~~~g~-tpLh 188 (276)
T 4hbd_A 117 YSVSHANFPVVQQLL----DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAK---ASQAGQ-TALM 188 (276)
T ss_dssp HHHHTTCHHHHHHHH----HTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCC---CTTTCC-CHHH
T ss_pred HHHHCCCHHHHHHHH----HCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccc---cCCCCC-CHHH
Confidence 344667765544443 4443 22 2233334444433222233344445555554433321 011122 2233
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHh
Q 036731 136 GLCKIGKLKNARELSQSLTRAGLMPN---VVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNC---VIFTTLMPSFIR 209 (259)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~ 209 (259)
..+..|+.+-+ +.+.+.|..++ ..-.+.|..+ +..|+.+-+..+++ ..|..++. .-.+. +...+.
T Consensus 189 ~A~~~g~~~~v----~~Ll~~gad~n~~d~~G~TpLh~A-~~~g~~~iv~~Ll~---~~gad~~~~d~~g~Tp-L~~A~~ 259 (276)
T 4hbd_A 189 LAVSHGRVDVV----KALLACEADVNVQDDDGSTALMCA-CEHGHKEIAGLLLA---VPSCDISLTDRDGSTA-LMVALD 259 (276)
T ss_dssp HHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHH-HHHTCHHHHHHHHT---STTCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHcCCHHHH----HHHHhCCCCCCCCCCCCCCHHHHH-HHCCCHHHHHHHHh---cCCCCCcCcCCCCCCH-HHHHHH
Confidence 34455665543 44444554443 2233334333 45566554443332 03433332 22223 233345
Q ss_pred cCCHHHHHHHHHH
Q 036731 210 KNETSKVIELLRS 222 (259)
Q Consensus 210 ~~~~~~a~~~~~~ 222 (259)
.|+.+-+.-++++
T Consensus 260 ~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 260 AGQSEIASMLYSR 272 (276)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHhc
Confidence 6777766666654
No 403
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.48 E-value=1.8e+02 Score=20.09 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=18.7
Q ss_pred HHHHHH---hcCChHHHHHHHHHHhhCCCCCch
Q 036731 22 IIDGLC---KEGFVDKAKELFLQMKDENINPNV 51 (259)
Q Consensus 22 ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~ 51 (259)
+|+++. +.++.+.|+-++-+|++.|-.|.-
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~ 42 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLY 42 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHH
Confidence 445543 456777777777777777644433
No 404
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=24.07 E-value=88 Score=16.45 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 036731 142 KLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAH 182 (259)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 182 (259)
..++|..+-+.+...+.. ...+--.-+..+.+.|++++|+
T Consensus 21 cH~EA~tIA~~L~~~~~~-eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 21 CHQEAASIADWLAQEECM-AECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp CHHHHHHHHHHHHTSSTT-HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHccchHhHhh
Confidence 455666666665554321 1111111223344566666553
No 405
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.60 E-value=2.5e+02 Score=21.61 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHH----------------HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 036731 133 LIDGLCKIGKLKNARELSQSL----------------TRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVK----- 191 (259)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~----------------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 191 (259)
++..+....+.+++.+.++++ .+....+.......+...+...|+.+.|..++++....
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Q ss_pred CCCCcHHH--HHHHHHHHHhcCCHHHHHHHH
Q 036731 192 GVAPNCVI--FTTLMPSFIRKNETSKVIELL 220 (259)
Q Consensus 192 ~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~ 220 (259)
++.|..+. |......+...+++..+....
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~ 192 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTS 192 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
No 406
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=23.30 E-value=32 Score=24.77 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=54.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---hhHHH
Q 036731 92 IMDELCKNRKMDEATRLLDLMIQGGV-RPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNV---VTYNI 167 (259)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 167 (259)
.+...+..|+.+-+..+ .+.|. .++. .+..-++.+..+.........-..+++.+.+.|..++. .-.+.
T Consensus 114 ~Lh~A~~~g~~~~v~~L----l~~g~~~~~~---~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tp 186 (276)
T 4hbd_A 114 ALHYSVSHANFPVVQQL----LDSGVCKVDK---QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTA 186 (276)
T ss_dssp HHHHHHHTTCHHHHHHH----HHTSCCCTTC---CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCH
T ss_pred HHHHHHHCCCHHHHHHH----HHCCCCcCCC---CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCH
Confidence 34445577776654444 44443 3221 12233444444443333334445556666655543332 22333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 036731 168 TIHALCNDEQMDKAHDLFLDMEVKGVAPNC---VIFTTLMPSFIRKNETSKVIELLR 221 (259)
Q Consensus 168 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~ 221 (259)
|. ..+..|+.+-+..+ .+.|..++. .-.+.|..+ +..|+.+-+.-+++
T Consensus 187 Lh-~A~~~g~~~~v~~L----l~~gad~n~~d~~G~TpLh~A-~~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 187 LM-LAVSHGRVDVVKAL----LACEADVNVQDDDGSTALMCA-CEHGHKEIAGLLLA 237 (276)
T ss_dssp HH-HHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHH-HHHTCHHHHHHHHT
T ss_pred HH-HHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHH-HHCCCHHHHHHHHh
Confidence 43 34566765544444 445544432 233344433 45577665554443
No 407
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=23.13 E-value=1.5e+02 Score=18.78 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=9.3
Q ss_pred HHHHhcCChHHHHHHHHH
Q 036731 24 DGLCKEGFVDKAKELFLQ 41 (259)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~ 41 (259)
...++.|+.+.+..+++.
T Consensus 8 ~~A~~~g~~~~v~~ll~~ 25 (167)
T 3v31_A 8 HQLAAQGEMLYLATRIEQ 25 (167)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHc
Confidence 344456666555555443
No 408
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=23.04 E-value=1.8e+02 Score=19.74 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 036731 91 VIMDELCKNRKMDEATRLLDLMI 113 (259)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~ 113 (259)
.++.++...|++++|.++..++.
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666667776666666654
No 409
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=22.89 E-value=2.2e+02 Score=20.76 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=55.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC---chHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhh--HHHHHHH
Q 036731 21 TIIDGLCKEGFVDKAKELFLQMKDENINP---NVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVT--FNVIMDE 95 (259)
Q Consensus 21 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 95 (259)
.-+...++.|+.+.+..++... +..+ |..- .+.+...+..|+.+-+. .+.+.|..++... -.+.+..
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~---~~~~~~~d~~g-~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~ 97 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPL---NVNCHASDGRK-STPLHLAAGYNRVRIVQ----LLLQHGADVHAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTT---TTTCCCSSTTC-CCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhc---CCCcccCCCCC-CCHHHHHHHcCCHHHHH----HHHHcCCCCCccCCCCCcHHHH
Confidence 3455566788888877777542 2222 2222 23344555667765544 4445565543321 1234445
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHH
Q 036731 96 LCKNRKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELS 150 (259)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 150 (259)
.+..|+.+- ++.+.+.|..++. .+..-++ .+...+..|+.+-+..++
T Consensus 98 A~~~g~~~i----v~~Ll~~g~~~~~---~~~~g~t-~L~~A~~~~~~~~v~~Ll 144 (351)
T 3utm_A 98 ACSYGHYEV----TELLLKHGACVNA---MDLWQFT-PLHEAASKNRVEVCSLLL 144 (351)
T ss_dssp HHHTTCHHH----HHHHHHTTCCTTC---CCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCHHH----HHHHHHCCCCCCC---CCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence 556677554 4444455554432 1112222 334445567765444444
No 410
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=22.39 E-value=1.2e+02 Score=17.35 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHc-CCCCchhhHHHHHHHHHH
Q 036731 67 GNEAEYLFIEMMDR-GLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 67 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 98 (259)
.+++...|.+|+.. ++. ...+|...+...+.
T Consensus 16 ~eea~~~Fk~LL~e~~V~-p~~tWe~~~~~i~~ 47 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVS-AFSTWEKELHKIVF 47 (82)
T ss_dssp HHHHHHHHHHHHHHTTCC-SSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcC-CCCCHHHHHHHHcc
Confidence 34555666655533 333 33345555544443
No 411
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=22.06 E-value=69 Score=20.95 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=32.1
Q ss_pred CChhHHHHHHHHHHHcCCC-CchhhHHHHHHHHH---HcCCHHHHHHHHHHHHhCCCCC
Q 036731 65 NDGNEAEYLFIEMMDRGLQ-SDVVTFNVIMDELC---KNRKMDEATRLLDLMIQGGVRP 119 (259)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~ 119 (259)
..+++|.+.+..|++.-+. -.+..||..+..+- ..++. ..+|..+.+.++.|
T Consensus 72 ~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lgL 127 (152)
T 1rw2_A 72 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCSS
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCccc
Confidence 3577888888888765332 25667888776653 23333 55566666655543
No 412
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.01 E-value=1.8e+02 Score=19.38 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 036731 144 KNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVA 194 (259)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 194 (259)
+....++..+.+.|.--|...-..++....+.|.+ ....+-.++...|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 34455556666666553443334444444443322 223445555555553
No 413
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.91 E-value=1.9e+02 Score=19.39 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=98.9
Q ss_pred CchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccchhHH
Q 036731 49 PNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKMDEATRLLDLMIQGGVRPDAFCEINIV 128 (259)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++...-...+..+.+.++.+.. ..+..+... ++...-...+.++...++.+ +...+..+.. .+ +..
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~-~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~------~~~ 96 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAV-EPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DE------DGW 96 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CS------SHH
T ss_pred CCHHHHHHHHHHHHHhCCccHH-HHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CC------CHH
Confidence 4566666666667777764433 333334432 36666666777777777643 3333333332 12 346
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 036731 129 AYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDEQMDKAHDLFLDMEVKGVAPNCVIFTTLMPSFI 208 (259)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 208 (259)
+-...+.+..+.++.+. ...+..+.. .++..+-...+.++...+..+ +...+..+.. .++..+-...+.++.
T Consensus 97 vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 97 VRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp HHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 66777777888877543 344444443 356667777777777777644 4455555553 356677777788888
Q ss_pred hcCCHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHhc
Q 036731 209 RKNETSKVIELLRSMDKRNVMPYASILSIIVDLLVKNE 246 (259)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 246 (259)
+.+.. ++...+..+.+. ++..+-...+.++...+
T Consensus 169 ~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 169 EIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 88764 455556665542 34445555555555444
No 414
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.75 E-value=2.6e+02 Score=21.05 Aligned_cols=130 Identities=12% Similarity=-0.046 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHhhC---CCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCH
Q 036731 26 LCKEGFVDKAKELFLQMKDE---NINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQSDVVTFNVIMDELCKNRKM 102 (259)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (259)
+...|++++|+..|+..... -+.-+..--..+-....-+..+--|+.+ ++.+..+..+...-+.-+.+|...-++
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~i--El~Rr~l~~~~~kR~lELAAYFT~c~L 201 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSI--ELERRSLKEGNTVRMLELAAYFTKAKL 201 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHH--HHHHHTCCTTCHHHHHHHHHHGGGSCC
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCcccHHHHHHHHHHhccCCC
Q ss_pred HHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 036731 103 DEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGKLKNARELSQSLTRAGLMPNVVTYNITIHALCNDE 176 (259)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 176 (259)
+....++ +....+....+.+++..|..+-+++.+.+..+....=..-+..-+...
T Consensus 202 Qp~H~~L-------------------aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 202 SPIHRTN-------------------ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp CHHHHHH-------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTS
T ss_pred cHHHHHH-------------------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
No 415
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=21.56 E-value=71 Score=19.36 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036731 179 DKAHDLFLDMEVKGVAPNCVIFTTLMPSFIRKNETSKVIELLR 221 (259)
Q Consensus 179 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (259)
+.+.+++....... ....|...|+.++.+.+.-+-|..+..
T Consensus 58 eq~~~mL~~W~~r~--G~~AT~~~L~~AL~~~~~~dvae~l~~ 98 (110)
T 1wxp_A 58 MRAKQLLVAWQDQE--GVHATPENLINALNKSGLSDLAESLTN 98 (110)
T ss_dssp HHHHHHHHHHHHHH--GGGCCHHHHHHHHHHTTCHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh--CcCcHHHHHHHHHHHcCcHHHHHHHHH
Confidence 45555555444331 122356666666666666665555443
No 416
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.26 E-value=2.8e+02 Score=21.23 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=9.7
Q ss_pred HHHHHHhcCChHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELF 39 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~ 39 (259)
.+...+..|+.+-+..++
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll 34 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL 34 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 444555667665544444
No 417
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.21 E-value=1.2e+02 Score=16.80 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 036731 67 GNEAEYLFIEMMDRGLQSDVVTFNVIMDELCK 98 (259)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (259)
.++|...|.+|++..-.....+|...+..+..
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~ 45 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNASWEQAMKMIIN 45 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHcc
Confidence 45566666666543222234456555555443
No 418
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.02 E-value=1.3e+02 Score=17.32 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHHHHHHhcCC
Q 036731 100 RKMDEATRLLDLMIQGGVRPDAFCEINIVAYGCLIDGLCKIGK 142 (259)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (259)
...++|.++++.+...|. ..|..++.++...+.
T Consensus 50 t~~~kar~Lld~l~~kG~----------~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDN----------DSYVSFYNALLHEGY 82 (94)
T ss_dssp SHHHHHHHHHHHHTTSCH----------HHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHcCH----------HHHHHHHHHHHHcCH
Confidence 445556666655544331 455555555555544
No 419
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.75 E-value=2.1e+02 Score=19.49 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=54.5
Q ss_pred HHHHHHHH-HHhcCChHHHHHHHHHHhhCCCCCchHhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCC------------
Q 036731 18 TYNTIIDG-LCKEGFVDKAKELFLQMKDENINPNVVTYNSLIHGFCYANDGNEAEYLFIEMMDRGLQS------------ 84 (259)
Q Consensus 18 ~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------------ 84 (259)
-|..|+.. +--.|.+.+++-++...- ..+..-|.. -+|-+..++..|+..++.+....+..
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 34444433 234667766665543221 111112222 25678899999999999988544331
Q ss_pred ----c-hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036731 85 ----D-VVTFNVIMDELCKNRKMDEATRLLDLM 112 (259)
Q Consensus 85 ----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 112 (259)
| ...++.+...|...|+.++|+..+..-
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 2 234677778889999999999988643
No 420
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=20.65 E-value=1.7e+02 Score=18.59 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=8.9
Q ss_pred HHHHHHhcCChHHHHHHH
Q 036731 22 IIDGLCKEGFVDKAKELF 39 (259)
Q Consensus 22 ll~~~~~~~~~~~a~~~~ 39 (259)
.+...++.|+.+.+..++
T Consensus 17 ~l~~A~~~g~~~~v~~Ll 34 (169)
T 2y1l_E 17 KLLEAARAGRDDEVRILM 34 (169)
T ss_dssp HHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHH
Confidence 344444566665554444
No 421
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.64 E-value=1.8e+02 Score=20.88 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=8.0
Q ss_pred HHHHHHHHcCCCCC
Q 036731 148 ELSQSLTRAGLMPN 161 (259)
Q Consensus 148 ~~~~~~~~~~~~~~ 161 (259)
..++...+.|++|.
T Consensus 14 ~~~~~~~~~G~~i~ 27 (258)
T 2i2x_B 14 TRYNVALEKALTPE 27 (258)
T ss_dssp CCHHHHHSCSSCHH
T ss_pred HHHHHHHhCCCCHH
Confidence 44555566676654
Done!