BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036732
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103
LECPIC ESF + P +L CGHT+C+ C+ L + + + CP+C+ +
Sbjct: 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN----------GVRCPFCSKI 65
Query: 104 S 104
+
Sbjct: 66 T 66
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 32.3 bits (72), Expect = 0.30, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 45 ECPICWESFNMVENVPYVLWCGHTLCKNCIL 75
ECPIC + P CGH CK CI+
Sbjct: 27 ECPICLMALREAVQTP----CGHRFCKACII 53
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 32.0 bits (71), Expect = 0.33, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 46 CPICWESFNMVENVPYVLWCGHTLCKNCI 74
CPIC E P L CGH+LC+ CI
Sbjct: 15 CPICLELLTE----PLSLDCGHSLCRACI 39
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 31.6 bits (70), Expect = 0.44, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 46 CPICWESFNMVENVPYVLWCGHTLCKNC 73
CPIC E + V +VL CGH L + C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTC 35
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 31.2 bits (69), Expect = 0.58, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 46 CPICWESFNMVENVPYVLWCGHTLCKNC 73
CPIC E + V +VL CGH L + C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTC 35
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 31.2 bits (69), Expect = 0.64, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 45 ECPICWESFNMVENVPYVLWCGHTLCKNCIL 75
ECPIC + P CGH CK CI+
Sbjct: 8 ECPICLMALREAVQTP----CGHRFCKACII 34
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
LECPIC E P C H CK C+L L
Sbjct: 22 LECPICLELIKE----PVSTKCDHIFCKFCMLKL 51
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 44 LECPICWESFN-MVENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQL------PLF 94
+ CPIC + ++ +V+N ++ CGH C C+ PT ++ P++
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 67
Query: 95 I-----SCPWCNLLSFRVVYKGNL 113
I SCP C +V G L
Sbjct: 68 IGSGTVSCPICMDGYSEIVQNGRL 91
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 45 ECPICWESFNMVENVPYVLWCGHTLCKNCIL 75
ECPIC + P CGH CK CI+
Sbjct: 20 ECPICLMALREAVQTP----CGHRFCKACII 46
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCIL 75
LECP+C E + + E+V L C H +CI+
Sbjct: 16 LECPVCKEDYALGESVRQ-LPCNHLFHDSCIV 46
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 45 ECPICWESFNMVENVPYVLWCGHTLCKNCIL 75
ECPIC + P CGH CK CI+
Sbjct: 20 ECPICLMALREAVQTP----CGHRFCKACII 46
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 27.3 bits (59), Expect = 8.6, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFN-MVENVPYVLW--CGHTLCKNCI 74
+ CPIC + ++ +V+N ++ CGH C C+
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 44
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 27.3 bits (59), Expect = 9.3, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFN-MVENVPYVLW--CGHTLCKNCI 74
+ CPIC + ++ +V+N ++ CGH C C+
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 49
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQL 91
L C IC+E FN+ +P C H C CI + PT V +
Sbjct: 23 LRCGICFEYFNIAMIIP---QCSHNYCSLCIRKFLSYKTQCPTCCVTV 67
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 27.3 bits (59), Expect = 10.0, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFN-MVENVPYVLW--CGHTLCKNCI 74
+ CPIC + ++ +V+N ++ CGH C C+
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,649,046
Number of Sequences: 62578
Number of extensions: 220670
Number of successful extensions: 376
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 23
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)