BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036732
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1
SV=2
Length = 653
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCN 101
E LECPIC ESF + P +L CGHT+C+ C+ L + + + CP+C+
Sbjct: 16 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN----------GVRCPFCS 65
Query: 102 LLS 104
++
Sbjct: 66 KIT 68
>sp|Q8CH72|TRI32_MOUSE E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1
SV=2
Length = 655
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCN 101
E LECPIC ESF + P +L CGHT+C+ C+ L + + + CP+C+
Sbjct: 17 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN----------GVRCPFCS 66
Query: 102 LLS 104
++
Sbjct: 67 KIT 69
>sp|Q9H0X6|RN208_HUMAN RING finger protein 208 OS=Homo sapiens GN=RNF208 PE=1 SV=2
Length = 261
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCN 101
E LECP C S+N+ + P VL C H++C+ C+ L + K+ FISCP C
Sbjct: 139 EPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKY--------KFISCPTCR 190
>sp|Q8K0W3|RN208_MOUSE RING finger protein 208 OS=Mus musculus GN=Rnf208 PE=2 SV=2
Length = 265
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 30 SDDDVSSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPV 89
S S V E LECP C ++N+ + P VL C H++C+ C+ L + K+
Sbjct: 131 SAPSSSGPVIAGEPLECPTCGHTYNVTQRRPRVLSCLHSVCEQCLQILYESCPKY----- 185
Query: 90 QLPLFISCPWCN 101
FISCP C+
Sbjct: 186 ---KFISCPTCH 194
>sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1
SV=2
Length = 1625
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 46 CPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105
C +C +N E VP +L CGH CK+C+ + F T ++CP C +S
Sbjct: 10 CSVCHTRYNEDERVPLLLQCGHGFCKDCLSKM------FST---SSDTTLTCPRCRHVS- 59
Query: 106 RVVYKGNLKFPRKNYFLLWMVESMNG 131
V +++ RKNY +L ++ + +G
Sbjct: 60 --VVGNSVQGLRKNYAMLALIHAASG 83
>sp|O74775|SIP5_SCHPO Protein sip5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sip5 PE=1 SV=1
Length = 554
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 43 SLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPL-----FIS- 96
++ECPIC+ + N Y C +C C + ++ A PT+ P IS
Sbjct: 148 AMECPICFLYY--PSNFNYTRCCAQPICSECFVEIRRAEPHLPTVHANEPTPNEFDLISE 205
Query: 97 ---CPWCNLLSFRVVYKGNLKF 115
CP+C F V+YK N K
Sbjct: 206 PAKCPYCMTERFGVIYKPNPKL 227
>sp|Q8IWR1|TRI59_HUMAN Tripartite motif-containing protein 59 OS=Homo sapiens GN=TRIM59
PE=2 SV=1
Length = 403
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPT-LPVQLPLFISCPW 99
EE L CPIC+ F P VL C HT C+NC+ + A F P+++PL CP
Sbjct: 5 EEELTCPICYSIFED----PRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPL--KCPN 58
Query: 100 CNLLS 104
C ++
Sbjct: 59 CRSIT 63
>sp|D2H788|RN182_AILME E3 ubiquitin-protein ligase RNF182 OS=Ailuropoda melanoleuca
GN=RNF182 PE=3 SV=1
Length = 247
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 26 ASECSDDDVSSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFP 85
AS+ D+ + VS E LEC IC+ +N+ + P VL C H +C C+ + ++ F
Sbjct: 2 ASQSPDEAAEAQVSDE--LECKICYNRYNLKQRKPKVLECCHRVCAKCL----YKIIDFG 55
Query: 86 TLPVQLPLFISCPWCN 101
P + I CP+C
Sbjct: 56 DSPQGV---IVCPFCR 68
>sp|Q86UV7|TRI73_HUMAN Tripartite motif-containing protein 73 OS=Homo sapiens GN=TRIM73
PE=2 SV=1
Length = 250
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 31/120 (25%)
Query: 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFI 95
S++ E+ L+CPIC E F +L CGH+ CK C++ L + L +
Sbjct: 6 SLLELEDRLQCPICLEVFKE----SLMLQCGHSYCKGCLVSLSY----------HLDTKV 51
Query: 96 SCPWCNLLSFRVVYKGNLKFPRKNYFLLWMVESMN--GD---RVKSH-----SGFCEDRQ 145
CP C ++VV G+ P N L W++E++ GD +V H S FCE Q
Sbjct: 52 RCPMC----WQVV-DGSSSLP--NVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQ 104
>sp|Q922Y2|TRI59_MOUSE Tripartite motif-containing protein 59 OS=Mus musculus GN=Trim59
PE=2 SV=2
Length = 403
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPT-LPVQLPLFISCPW 99
EE L CPIC+ F P VL C HT C+NC+ + A F P+++PL CP
Sbjct: 5 EEELTCPICYSIFED----PRVLPCSHTFCRNCLENVLQASGNFYIWRPLRIPL--KCPN 58
Query: 100 CN 101
C
Sbjct: 59 CR 60
>sp|Q865W2|TRI50_PIG E3 ubiquitin-protein ligase TRIM50 OS=Sus scrofa GN=TRIM50 PE=2
SV=1
Length = 486
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
SV E+ L+CP+C E F P +L CGH+ CK C+L L
Sbjct: 6 SVPELEDRLQCPVCLEVFKE----PLMLQCGHSYCKGCLLSL 43
>sp|Q8CEF8|RN222_MOUSE RING finger protein 222 OS=Mus musculus GN=Rnf222 PE=2 SV=2
Length = 211
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 45 ECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104
ECP+C+E F ++ L CGH C +C++ + + Q+ I CP C ++
Sbjct: 13 ECPVCYEKFRDLDGASRTLSCGHVFCHDCLVKYLLST----RVDGQVQRTIVCPICRYVT 68
Query: 105 F 105
F
Sbjct: 69 F 69
>sp|F6ZQ54|TRI13_XENTR Tripartite motif containing 13 OS=Xenopus tropicalis GN=trim13 PE=3
SV=1
Length = 408
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 53/140 (37%), Gaps = 32/140 (22%)
Query: 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILG--------LQWAVVKFPTLPVQLP 92
EE L CPIC F+ P VL C H CK C+ G +QW P
Sbjct: 5 EEDLTCPICCSLFD----DPRVLPCSHNFCKKCLDGVLEENSRTMQWR-----------P 49
Query: 93 LFISCPWCNLLSFRVVYKGNLKFPRKNYFLLWMVESMNGDRVKSHSGFCED--RQPAS-- 148
CP C + + G + NY L +VE N +V C++ QP +
Sbjct: 50 SSFKCPTCRKETPTMGVNG----LQVNYLLKGIVEKYNKIKVSPKMPVCKEHSDQPLNIF 105
Query: 149 -SSSGSSTFGNQLNRGNHRR 167
S+ G+ G H++
Sbjct: 106 CSTDLKLICGSCATTGEHKK 125
>sp|Q8N6D2|RN182_HUMAN E3 ubiquitin-protein ligase RNF182 OS=Homo sapiens GN=RNF182 PE=1
SV=1
Length = 247
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 26 ASECSDDDVSSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFP 85
AS+ +D S S E LEC IC+ +N+ + P VL C H +C C+ + ++ F
Sbjct: 2 ASQPPEDTAESQASDE--LECKICYNRYNLKQRKPKVLECCHRVCAKCL----YKIIDFG 55
Query: 86 TLPVQLPLFISCPWC 100
P + I CP+C
Sbjct: 56 DSPQGV---IVCPFC 67
>sp|A6NCQ9|RN222_HUMAN RING finger protein 222 OS=Homo sapiens GN=RNF222 PE=4 SV=1
Length = 220
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 45 ECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104
ECP+C+E F +E L CGH C +C++ + + Q+ + CP C ++
Sbjct: 13 ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLST----RVDGQVQRTLVCPICRYVT 68
Query: 105 F 105
F
Sbjct: 69 F 69
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 40.8 bits (94), Expect = 0.011, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKF 84
L CPIC ++F+ P L CGHT+CK C+ L F
Sbjct: 12 LSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPF 52
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 40.4 bits (93), Expect = 0.012, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKF 84
L CPIC ++F+ P L CGHT+CK C+ L F
Sbjct: 12 LSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPF 52
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 40.4 bits (93), Expect = 0.012, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKF 84
L CPIC ++F+ P L CGHT+CK C+ L F
Sbjct: 12 LSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPF 52
>sp|Q86UV6|TRI74_HUMAN Tripartite motif-containing protein 74 OS=Homo sapiens GN=TRIM74
PE=2 SV=1
Length = 250
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 31/120 (25%)
Query: 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFI 95
S++ E+ L+CPIC E F +L CGH+ CK C++ L + L +
Sbjct: 6 SLLELEDWLQCPICLEVFKE----SLMLQCGHSYCKGCLVSLSY----------HLDTKV 51
Query: 96 SCPWCNLLSFRVVYKGNLKFPRKNYFLLWMVESMN--GD---RVKSH-----SGFCEDRQ 145
CP C ++VV G+ P N L W++E++ GD +V H S FCE Q
Sbjct: 52 RCPMC----WQVV-DGSSSLP--NVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQ 104
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
+V ++ L+CPIC E F P +L CGH+ CKNC+ L
Sbjct: 6 TVPELQDQLQCPICLEVFKE----PLMLQCGHSYCKNCLDSL 43
>sp|Q86XT4|TRI50_HUMAN E3 ubiquitin-protein ligase TRIM50 OS=Homo sapiens GN=TRIM50 PE=1
SV=1
Length = 487
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 31/120 (25%)
Query: 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFI 95
S++ E+ L+CPIC E F P +L CGH+ CK C++ +L L +
Sbjct: 6 SLLELEDWLQCPICLEVFKE----PLMLQCGHSYCKGCLV----------SLSCHLDAEL 51
Query: 96 SCPWCNLLSFRVVYKGNLKFPRKNYFLLWMVESMN--GD---RVKSH-----SGFCEDRQ 145
CP C R G+ P N L ++E++ GD +V H S FCE Q
Sbjct: 52 RCPVC-----RQAVDGSSSLP--NVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQ 104
>sp|P0C090|RC3H2_MOUSE RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Mus musculus GN=Rc3h2 PE=2 SV=1
Length = 1187
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKF 84
E L CPIC+ F+ + P L C HT+CK C+ L F
Sbjct: 10 EFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPF 52
>sp|Q9HBD1|RC3H2_HUMAN RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Homo sapiens GN=RC3H2 PE=1 SV=2
Length = 1191
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKF 84
E L CPIC+ F+ + P L C HT+CK C+ L F
Sbjct: 10 EFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPF 52
>sp|Q7XZZ3|BAHL1_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. japonica GN=Os03g0650900 PE=2 SV=1
Length = 339
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 34 VSSVVSREESLECPICWES-FNMVENVPYVLWCGHTLCKNCILG 76
+S + E SL CPIC ++ FN PY L CGH CK C G
Sbjct: 223 ISETMKYEYSLTCPICLDTLFN-----PYALSCGHLFCKGCACG 261
>sp|A2XK56|BAHL1_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_12825 PE=3 SV=1
Length = 339
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 34 VSSVVSREESLECPICWES-FNMVENVPYVLWCGHTLCKNCILG 76
+S + E SL CPIC ++ FN PY L CGH CK C G
Sbjct: 223 ISETMKYEYSLTCPICLDTLFN-----PYALSCGHLFCKGCACG 261
>sp|Q96D59|RN183_HUMAN RING finger protein 183 OS=Homo sapiens GN=RNF183 PE=2 SV=1
Length = 192
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCI 74
RE ECP+CW FN + P +L C H+ C C+
Sbjct: 6 GRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECL 41
>sp|Q8BGX0|TRI23_MOUSE E3 ubiquitin-protein ligase TRIM23 OS=Mus musculus GN=Trim23 PE=2
SV=1
Length = 574
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 28/117 (23%)
Query: 44 LECPICWESFNMV-ENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLF---ISCPW 99
LEC +C + F++ + VP +L CGHT+C +C+ +LPL I CP+
Sbjct: 29 LECGVCEDVFSLQGDKVPRLLLCGHTVCHDCL--------------TRLPLHGRAIRCPF 74
Query: 100 CNLLSFRVVYKGNLKF--PRKNYFLLWMVESMNGDRVKSHSGFCEDRQPASSSSGSS 154
+V G+ +KN+ LL ++E + + + + A +SG S
Sbjct: 75 ----DRQVTDLGDSGVWGLKKNFALLELLERLQNGHIGQYGAA----EEAIGTSGES 123
>sp|Q8QZS5|RN183_MOUSE RING finger protein 183 OS=Mus musculus GN=Rnf183 PE=2 SV=1
Length = 190
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 34 VSSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCI 74
+S +E ECP+CW FN + P VL C H+ C C+
Sbjct: 1 MSEPQGQELRAECPVCWNPFNNTFHTPKVLDCCHSFCVECL 41
>sp|Q5ZMD4|TRI59_CHICK Tripartite motif-containing protein 59 OS=Gallus gallus GN=TRIM59
PE=2 SV=1
Length = 408
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPT-LPVQLPLFISCPW 99
EE L C IC+ F P VL C HT C++C+ G+ F P+++PL CP
Sbjct: 5 EEELTCSICYSLFED----PRVLPCSHTFCRSCLEGVIQLSSNFSIWRPLRVPL--KCPN 58
Query: 100 CNLLSFRVVYKGNLKFPRKNYFLLWMVESMNGDRVKSHSGF--CED--RQP 146
C + + G P N+ L ++E R + HS C + RQP
Sbjct: 59 CRSI-VEIPASGTESLPI-NFALKAIIEKY---RQEDHSDVATCSEHYRQP 104
>sp|Q6INB3|RN182_XENLA E3 ubiquitin-protein ligase RNF182 OS=Xenopus laevis GN=rnf182
PE=2 SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 26 ASECSDDDVSSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
S+ S+D+ S + LEC IC+ +N+ + P VL C H +C C+ L
Sbjct: 2 TSQLSEDNSESPNLNSDELECKICYNRYNLRQRKPKVLGCCHRVCAKCLYKL 53
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
+V ++ L+CPIC E F P +L CGH+ CK+C+ L
Sbjct: 6 TVPELQDQLQCPICLEVFKE----PLMLQCGHSYCKDCLDNL 43
>sp|Q503I2|TRI13_DANRE Tripartite motif-containing 13 OS=Danio rerio GN=trim13 PE=2 SV=1
Length = 404
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100
EE L CPIC F P VL C H+ CK C+ G ++ P P F CP C
Sbjct: 5 EEDLTCPICCCLFE----DPRVLPCSHSFCKKCLEG----ILDGNRSPTWRPPF-KCPTC 55
Query: 101 NLLSFRVVYKGNLKFPRKNYFLLWMVESMNGDRVKSHSGFC 141
V+ G + NY L +VE N RV C
Sbjct: 56 RK---ETVHNGIASL-QVNYSLRGIVEKYNRIRVMPRMSQC 92
>sp|Q5M7V1|TRI13_RAT Tripartite motif-containing 13 OS=Rattus norvegicus GN=Trim13 PE=2
SV=1
Length = 407
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100
EE L CPIC F+ P VL C H CK C+ GL V+ + P CP C
Sbjct: 5 EEDLTCPICCSLFD----DPRVLPCSHNFCKKCLEGLLEGNVRN---SLWRPSPFKCPTC 57
Query: 101 NLLSFRVVYKGNLKFPRKNYFLLWMVESMNGDRVKSHSGFCED 143
+ + + NY L +VE N ++ C++
Sbjct: 58 R----KETSATGVNSLQVNYSLKGIVEKYNKIKISPKMPVCKE 96
>sp|Q8C432|RN182_MOUSE E3 ubiquitin-protein ligase RNF182 OS=Mus musculus GN=Rnf182 PE=2
SV=1
Length = 247
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100
+ LEC IC+ +N+ + P VL C H +C C+ + ++ F P + I CP+C
Sbjct: 16 DELECKICYNRYNLKQRKPKVLECCHRVCAKCL----YKIIDFGDSPQGV---IVCPFC 67
>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1
PE=2 SV=1
Length = 826
Score = 38.5 bits (88), Expect = 0.053, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
LECP+C E + V L C HT CK C+LG+
Sbjct: 10 LECPVCLERLDASAKV---LPCQHTFCKRCLLGI 40
>sp|D3ZBM4|RN182_RAT E3 ubiquitin-protein ligase RNF182 OS=Rattus norvegicus GN=Rnf182
PE=3 SV=1
Length = 247
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100
+ LEC IC+ +N+ + P VL C H +C C+ + ++ F P + I CP+C
Sbjct: 16 DELECKICYNRYNLKQRKPKVLECCHRVCAKCL----YKIIDFGDSPQGV---IVCPFC 67
>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis
GN=sh3rf1 PE=2 SV=1
Length = 861
Score = 38.1 bits (87), Expect = 0.061, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
LECP+C E + V L C HT CK C+LG+
Sbjct: 10 LECPVCLERLDASAKV---LPCQHTFCKRCLLGI 40
>sp|P36407|TRI23_RAT E3 ubiquitin-protein ligase TRIM23 OS=Rattus norvegicus GN=Trim23
PE=2 SV=2
Length = 573
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 24/93 (25%)
Query: 44 LECPICWESFNMV-ENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLF---ISCPW 99
LEC +C + F++ + VP +L CGHT+C +C+ +LPL I CP+
Sbjct: 29 LECGVCEDVFSLQGDKVPRLLLCGHTVCHDCL--------------TRLPLHGRAIRCPF 74
Query: 100 CNLLSFRVVYKGNLKF--PRKNYFLLWMVESMN 130
+V G+ +KN+ LL ++E +
Sbjct: 75 ----DRQVTDLGDSGVWGLKKNFALLELLERLQ 103
>sp|P36406|TRI23_HUMAN E3 ubiquitin-protein ligase TRIM23 OS=Homo sapiens GN=TRIM23 PE=1
SV=1
Length = 574
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 24/93 (25%)
Query: 44 LECPICWESFNMV-ENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLF---ISCPW 99
LEC +C + F++ + VP +L CGHT+C +C+ +LPL I CP+
Sbjct: 29 LECGVCEDVFSLQGDKVPRLLLCGHTVCHDCL--------------TRLPLHGRAIRCPF 74
Query: 100 CNLLSFRVVYKGNLKF--PRKNYFLLWMVESMN 130
+V G+ +KN+ LL ++E +
Sbjct: 75 ----DRQVTDLGDSGVWGLKKNFALLELLERLQ 103
>sp|A5D7F8|SH3R1_BOVIN E3 ubiquitin-protein ligase SH3RF1 OS=Bos taurus GN=SH3RF1 PE=2
SV=1
Length = 840
Score = 38.1 bits (87), Expect = 0.067, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
LECP+C E + V L C HT CK C+LG+
Sbjct: 10 LECPVCLERLDASAKV---LPCQHTFCKRCLLGI 40
>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1
SV=2
Length = 888
Score = 38.1 bits (87), Expect = 0.068, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
LECP+C E + V L C HT CK C+LG+
Sbjct: 10 LECPVCLERLDASAKV---LPCQHTFCKRCLLGI 40
>sp|Q71F54|SH3R1_RAT E3 ubiquitin-protein ligase SH3RF1 OS=Rattus norvegicus GN=Sh3rf1
PE=1 SV=1
Length = 894
Score = 38.1 bits (87), Expect = 0.072, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
LECP+C E + V L C HT CK C+LG+
Sbjct: 10 LECPVCLERLDASAKV---LPCQHTFCKRCLLGI 40
>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2
SV=1
Length = 888
Score = 38.1 bits (87), Expect = 0.072, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
LECP+C E + V L C HT CK C+LG+
Sbjct: 10 LECPVCLERLDASAKV---LPCQHTFCKRCLLGI 40
>sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus GN=Sh3rf1 PE=1
SV=2
Length = 892
Score = 38.1 bits (87), Expect = 0.072, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
LECP+C E + V L C HT CK C+LG+
Sbjct: 10 LECPVCLERLDASAKV---LPCQHTFCKRCLLGI 40
>sp|O60858|TRI13_HUMAN E3 ubiquitin-protein ligase TRIM13 OS=Homo sapiens GN=TRIM13 PE=1
SV=2
Length = 407
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100
EE L CPIC F+ P VL C H CK C+ G+ V+ + P CP C
Sbjct: 5 EEDLTCPICCSLFD----DPRVLPCSHNFCKKCLEGILEGSVRN---SLWRPAPFKCPTC 57
Query: 101 NLLSFRVVYKGNLKFPRKNYFLLWMVESMNGDRVKSHSGFCE 142
+ + + NY L +VE N ++ C+
Sbjct: 58 R----KETSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCK 95
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 37.7 bits (86), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100
+++LECPIC E+ P+ CGHT C C+L PT +L S +
Sbjct: 80 KKTLECPICTEALQR----PFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPSPAYL 135
Query: 101 NLLSFRVVYKGNLKFP 116
VV N FP
Sbjct: 136 VYEIMNVVAASNSGFP 151
>sp|Q9CYB0|TRI13_MOUSE E3 ubiquitin-protein ligase TRIM13 OS=Mus musculus GN=Trim13 PE=2
SV=1
Length = 407
Score = 37.7 bits (86), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100
EE L CPIC F+ P VL C H CK C+ GL V+ + P CP C
Sbjct: 5 EEDLTCPICCSLFD----DPRVLPCSHNFCKKCLEGLLEGNVRN---SLWRPSPFKCPTC 57
Query: 101 NLLSFRVVYKGNLKFPRKNYFLLWMVESMNGDRVKSHSGFCE 142
+ + + NY L +VE N ++ C+
Sbjct: 58 R----KETSATGVNSLQVNYSLKGIVEKYNKIKISPKMPVCK 95
>sp|Q3SWY0|RN183_BOVIN RING finger protein 183 OS=Bos taurus GN=RNF183 PE=2 SV=1
Length = 188
Score = 37.7 bits (86), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 45 ECPICWESFNMVENVPYVLWCGHTLCKNCI 74
ECP+CW FN + P VL C H+ C C+
Sbjct: 10 ECPVCWNPFNNTFHTPKVLDCCHSFCVECL 39
>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2
SV=2
Length = 867
Score = 37.7 bits (86), Expect = 0.091, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77
LECP+C E + V L C HT C+ C+LG+
Sbjct: 10 LECPVCLERLDATAKV---LPCQHTFCRRCLLGI 40
>sp|P0DH78|RN224_HUMAN RING finger protein 224 OS=Homo sapiens GN=RNF224 PE=4 SV=1
Length = 156
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100
EE +C IC ++++ ++P L+CGHT C+ C+ L P +I CP C
Sbjct: 19 EERTDCIICCSAYDLSGHLPRRLYCGHTFCQACVRRLD--------TPAPEQRWIPCPQC 70
Query: 101 N 101
Sbjct: 71 R 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,602,541
Number of Sequences: 539616
Number of extensions: 3989762
Number of successful extensions: 23329
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 278
Number of HSP's that attempted gapping in prelim test: 20313
Number of HSP's gapped (non-prelim): 1920
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)