Query 036732
Match_columns 266
No_of_seqs 195 out of 1369
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15227 zf-C3HC4_4: zinc fing 99.3 2.4E-12 5.2E-17 85.0 2.5 42 46-100 1-42 (42)
2 TIGR00599 rad18 DNA repair pro 99.1 1.2E-10 2.6E-15 110.6 4.8 72 36-131 19-90 (397)
3 smart00504 Ubox Modified RING 99.0 2.7E-10 5.8E-15 80.6 4.7 61 43-127 1-61 (63)
4 PF13445 zf-RING_UBOX: RING-ty 99.0 1.2E-10 2.6E-15 77.2 2.5 35 46-82 1-35 (43)
5 PLN03208 E3 ubiquitin-protein 99.0 4.9E-10 1.1E-14 96.5 5.2 62 38-105 13-79 (193)
6 KOG0287 Postreplication repair 99.0 2.6E-10 5.6E-15 104.7 3.0 72 36-131 16-87 (442)
7 KOG2177 Predicted E3 ubiquitin 98.9 1.4E-09 3.1E-14 96.1 4.3 72 37-134 7-78 (386)
8 PF04564 U-box: U-box domain; 98.8 4.1E-09 8.9E-14 77.5 4.0 69 42-133 3-71 (73)
9 PF13639 zf-RING_2: Ring finge 98.8 1.9E-09 4.1E-14 71.4 1.9 43 45-101 2-44 (44)
10 PF14835 zf-RING_6: zf-RING of 98.8 1.4E-09 2.9E-14 77.5 1.0 62 39-126 3-65 (65)
11 KOG0823 Predicted E3 ubiquitin 98.8 4.2E-09 9.2E-14 92.4 4.3 52 40-105 44-95 (230)
12 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.5E-09 7.6E-14 68.4 2.0 28 46-77 1-29 (39)
13 KOG0320 Predicted E3 ubiquitin 98.7 7.2E-09 1.6E-13 87.6 3.9 50 40-104 128-177 (187)
14 PF13920 zf-C3HC4_3: Zinc fing 98.7 5.8E-09 1.2E-13 71.0 2.7 47 42-105 1-48 (50)
15 COG5432 RAD18 RING-finger-cont 98.7 6.2E-09 1.3E-13 94.0 3.6 75 33-131 15-89 (391)
16 PF14634 zf-RING_5: zinc-RING 98.7 9E-09 1.9E-13 68.3 3.4 44 45-102 1-44 (44)
17 PF00097 zf-C3HC4: Zinc finger 98.7 6.9E-09 1.5E-13 67.4 2.3 40 46-100 1-41 (41)
18 KOG0317 Predicted E3 ubiquitin 98.7 9.5E-09 2.1E-13 92.8 3.7 53 35-104 231-283 (293)
19 PHA02929 N1R/p28-like protein; 98.6 1.8E-08 4E-13 89.9 3.3 53 40-105 171-227 (238)
20 cd00162 RING RING-finger (Real 98.5 1.5E-07 3.2E-12 60.9 3.4 43 45-103 1-44 (45)
21 PHA02926 zinc finger-like prot 98.5 1.1E-07 2.3E-12 83.3 3.6 62 37-105 164-230 (242)
22 KOG2164 Predicted E3 ubiquitin 98.4 1.4E-07 3.1E-12 91.0 2.6 51 43-105 186-236 (513)
23 smart00184 RING Ring finger. E 98.4 4.7E-07 1E-11 56.5 3.6 28 46-77 1-28 (39)
24 COG5574 PEX10 RING-finger-cont 98.3 3.1E-07 6.7E-12 82.2 2.5 48 41-103 213-260 (271)
25 KOG4367 Predicted Zn-finger pr 98.1 3.3E-06 7.2E-11 80.3 5.4 97 40-143 1-170 (699)
26 TIGR00570 cdk7 CDK-activating 98.0 3.3E-06 7.2E-11 77.8 3.3 48 42-105 2-54 (309)
27 KOG4628 Predicted E3 ubiquitin 98.0 4.6E-06 9.9E-11 78.0 2.9 48 44-104 230-277 (348)
28 KOG2660 Locus-specific chromos 97.9 6.6E-06 1.4E-10 75.8 3.0 73 37-129 9-82 (331)
29 KOG0311 Predicted E3 ubiquitin 97.9 2.4E-06 5.1E-11 79.3 -0.2 53 36-104 36-89 (381)
30 PF12678 zf-rbx1: RING-H2 zinc 97.9 9.6E-06 2.1E-10 59.6 2.8 44 45-101 21-73 (73)
31 KOG0824 Predicted E3 ubiquitin 97.8 9.2E-06 2E-10 74.0 1.9 48 42-105 6-53 (324)
32 KOG4185 Predicted E3 ubiquitin 97.8 1.5E-05 3.4E-10 73.0 3.3 73 43-129 3-77 (296)
33 PF12861 zf-Apc11: Anaphase-pr 97.8 3.1E-05 6.8E-10 58.4 4.1 52 43-104 21-81 (85)
34 KOG0978 E3 ubiquitin ligase in 97.7 9.7E-06 2.1E-10 81.7 1.1 53 37-105 637-689 (698)
35 KOG4159 Predicted E3 ubiquitin 97.7 1.7E-05 3.6E-10 75.9 2.6 49 40-105 81-129 (398)
36 KOG0802 E3 ubiquitin ligase [P 97.7 1.9E-05 4.2E-10 78.5 2.2 51 39-102 287-338 (543)
37 COG5243 HRD1 HRD ubiquitin lig 97.5 4.5E-05 9.8E-10 71.4 2.2 51 41-104 285-344 (491)
38 COG5222 Uncharacterized conser 97.4 0.00015 3.2E-09 66.3 4.3 67 43-131 274-341 (427)
39 KOG0804 Cytoplasmic Zn-finger 97.4 8E-05 1.7E-09 71.2 2.6 53 36-103 168-220 (493)
40 COG5152 Uncharacterized conser 97.4 0.00013 2.8E-09 63.1 3.2 47 42-105 195-241 (259)
41 COG5540 RING-finger-containing 97.3 0.00016 3.5E-09 66.2 2.7 51 41-104 321-371 (374)
42 PF11789 zf-Nse: Zinc-finger o 97.1 0.00032 7E-09 49.2 2.5 34 40-77 8-42 (57)
43 KOG1813 Predicted E3 ubiquitin 97.1 0.00025 5.3E-09 64.7 2.1 46 43-105 241-286 (313)
44 KOG2879 Predicted E3 ubiquitin 97.1 0.00042 9.1E-09 62.7 3.2 52 38-104 234-286 (298)
45 KOG4172 Predicted E3 ubiquitin 96.9 0.00021 4.5E-09 49.4 -0.1 46 43-104 7-53 (62)
46 KOG1039 Predicted E3 ubiquitin 96.9 0.0015 3.3E-08 61.4 5.4 55 41-105 159-221 (344)
47 PF11793 FANCL_C: FANCL C-term 96.8 0.00034 7.5E-09 51.0 0.4 61 43-105 2-66 (70)
48 KOG4265 Predicted E3 ubiquitin 96.7 0.00095 2.1E-08 62.4 2.8 48 41-105 288-336 (349)
49 KOG3161 Predicted E3 ubiquitin 96.7 0.00068 1.5E-08 67.5 1.2 41 37-77 5-45 (861)
50 KOG1002 Nucleotide excision re 96.6 0.00096 2.1E-08 65.2 1.8 54 40-105 533-586 (791)
51 KOG0297 TNF receptor-associate 96.5 0.0012 2.6E-08 63.3 1.7 48 40-104 18-66 (391)
52 KOG1734 Predicted RING-contain 96.5 0.0014 3E-08 59.2 2.0 52 42-104 223-280 (328)
53 KOG1785 Tyrosine kinase negati 96.5 0.0013 2.8E-08 62.4 1.8 46 45-105 371-416 (563)
54 KOG1645 RING-finger-containing 96.4 0.002 4.3E-08 61.3 2.7 52 42-104 3-55 (463)
55 KOG0825 PHD Zn-finger protein 95.8 0.0033 7.2E-08 64.0 0.9 56 42-111 122-177 (1134)
56 KOG1493 Anaphase-promoting com 95.8 0.0038 8.2E-08 46.1 0.9 50 45-104 22-80 (84)
57 smart00744 RINGv The RING-vari 95.6 0.017 3.8E-07 39.1 3.6 44 45-101 1-49 (49)
58 PF14447 Prok-RING_4: Prokaryo 95.3 0.0058 1.3E-07 42.4 0.6 44 43-105 7-50 (55)
59 KOG2817 Predicted E3 ubiquitin 95.2 0.013 2.9E-07 55.6 2.7 52 41-103 332-383 (394)
60 COG5236 Uncharacterized conser 95.1 0.023 5E-07 53.2 4.0 58 35-107 53-110 (493)
61 KOG0827 Predicted E3 ubiquitin 94.7 0.018 4E-07 54.5 2.3 48 44-101 5-52 (465)
62 KOG0828 Predicted E3 ubiquitin 94.4 0.021 4.5E-07 55.7 1.8 51 41-104 569-633 (636)
63 COG5175 MOT2 Transcriptional r 94.4 0.04 8.7E-07 51.5 3.5 50 43-104 14-63 (480)
64 COG5219 Uncharacterized conser 94.2 0.02 4.4E-07 59.6 1.4 53 41-104 1467-1522(1525)
65 PF14570 zf-RING_4: RING/Ubox 94.2 0.036 7.8E-07 37.5 2.1 46 46-103 1-46 (48)
66 KOG4275 Predicted E3 ubiquitin 94.2 0.0076 1.7E-07 55.1 -1.5 43 42-105 299-342 (350)
67 COG5194 APC11 Component of SCF 94.1 0.069 1.5E-06 39.8 3.7 47 45-104 33-80 (88)
68 KOG3800 Predicted E3 ubiquitin 93.9 0.04 8.8E-07 50.4 2.6 44 45-104 2-50 (300)
69 PF04641 Rtf2: Rtf2 RING-finge 93.7 0.073 1.6E-06 48.2 3.9 53 39-105 109-161 (260)
70 KOG1571 Predicted E3 ubiquitin 93.7 0.037 8E-07 52.0 2.0 45 40-104 302-346 (355)
71 KOG4692 Predicted E3 ubiquitin 93.6 0.04 8.6E-07 51.8 2.0 47 41-104 420-466 (489)
72 KOG1941 Acetylcholine receptor 93.6 0.038 8.2E-07 52.6 1.8 53 41-104 363-415 (518)
73 KOG1001 Helicase-like transcri 93.4 0.046 9.9E-07 56.0 2.2 45 44-104 455-499 (674)
74 KOG1814 Predicted E3 ubiquitin 93.2 0.061 1.3E-06 51.4 2.5 36 41-77 182-217 (445)
75 KOG3039 Uncharacterized conser 92.9 0.082 1.8E-06 47.5 2.8 54 39-105 217-270 (303)
76 COG5109 Uncharacterized conser 92.8 0.066 1.4E-06 49.6 2.2 54 39-103 332-385 (396)
77 KOG3002 Zn finger protein [Gen 92.7 0.1 2.2E-06 48.4 3.3 63 38-130 43-106 (299)
78 PF05290 Baculo_IE-1: Baculovi 92.7 0.098 2.1E-06 42.7 2.7 49 42-104 79-131 (140)
79 KOG4362 Transcriptional regula 92.7 0.064 1.4E-06 54.5 2.0 54 38-105 16-69 (684)
80 KOG4739 Uncharacterized protei 91.7 0.086 1.9E-06 47.1 1.4 43 44-104 4-47 (233)
81 PF07800 DUF1644: Protein of u 91.3 0.28 6.1E-06 41.3 4.0 20 42-65 1-20 (162)
82 KOG0826 Predicted E3 ubiquitin 90.6 0.18 4E-06 46.9 2.5 46 41-103 298-344 (357)
83 PHA03096 p28-like protein; Pro 88.6 0.28 6.1E-06 45.2 2.1 38 44-83 179-220 (284)
84 PF10367 Vps39_2: Vacuolar sor 87.7 0.21 4.5E-06 38.3 0.6 34 38-75 73-108 (109)
85 KOG1940 Zn-finger protein [Gen 86.5 0.4 8.6E-06 44.0 1.8 47 43-102 158-204 (276)
86 KOG2114 Vacuolar assembly/sort 85.7 0.71 1.5E-05 48.0 3.3 30 42-75 839-869 (933)
87 KOG2932 E3 ubiquitin ligase in 85.2 0.36 7.8E-06 44.8 0.8 44 45-106 92-135 (389)
88 KOG1812 Predicted E3 ubiquitin 85.0 0.58 1.2E-05 44.9 2.2 36 42-77 145-180 (384)
89 KOG4185 Predicted E3 ubiquitin 85.0 0.28 6.1E-06 44.9 0.0 49 43-103 207-265 (296)
90 COG5220 TFB3 Cdk activating ki 84.9 0.39 8.4E-06 43.1 0.9 47 42-104 9-63 (314)
91 KOG3970 Predicted E3 ubiquitin 84.8 1.4 3E-05 39.3 4.2 57 42-105 49-105 (299)
92 PF02891 zf-MIZ: MIZ/SP-RING z 82.2 1 2.2E-05 30.5 1.9 47 43-102 2-49 (50)
93 KOG3039 Uncharacterized conser 80.7 1 2.2E-05 40.7 1.9 43 36-82 36-78 (303)
94 KOG1428 Inhibitor of type V ad 78.9 2 4.4E-05 47.5 3.6 67 40-110 3483-3549(3738)
95 PF08746 zf-RING-like: RING-li 78.2 2.1 4.6E-05 28.0 2.4 40 46-100 1-43 (43)
96 KOG0298 DEAD box-containing he 75.0 0.73 1.6E-05 49.9 -0.8 52 36-103 1146-1197(1394)
97 KOG2930 SCF ubiquitin ligase, 74.4 2.4 5.3E-05 33.2 2.1 49 42-103 45-106 (114)
98 PF07234 DUF1426: Protein of u 73.6 9.2 0.0002 29.8 5.1 32 223-254 11-42 (117)
99 PF05883 Baculo_RING: Baculovi 73.1 2.2 4.7E-05 35.0 1.7 34 43-80 26-66 (134)
100 KOG1100 Predicted E3 ubiquitin 72.0 1.4 3.1E-05 38.7 0.4 37 46-103 161-198 (207)
101 PHA02702 ORF033 IMV membrane p 70.1 3.8 8.2E-05 30.2 2.2 23 238-260 46-68 (78)
102 PF10272 Tmpp129: Putative tra 69.1 4 8.7E-05 38.9 2.8 40 65-105 311-351 (358)
103 KOG2034 Vacuolar sorting prote 68.9 2.7 6E-05 44.0 1.7 36 39-77 813-849 (911)
104 KOG0825 PHD Zn-finger protein 66.7 5.3 0.00012 41.6 3.2 55 42-103 95-152 (1134)
105 PF13198 DUF4014: Protein of u 65.7 13 0.00027 27.2 4.1 25 220-244 18-42 (72)
106 KOG3268 Predicted E3 ubiquitin 65.5 6 0.00013 34.1 2.8 62 42-105 164-228 (234)
107 KOG1815 Predicted E3 ubiquitin 65.3 4.3 9.3E-05 39.6 2.2 33 41-77 68-101 (444)
108 KOG2789 Putative Zn-finger pro 64.3 4.9 0.00011 38.7 2.3 69 43-113 74-153 (482)
109 KOG2169 Zn-finger transcriptio 63.4 8.3 0.00018 39.5 3.9 78 34-131 297-375 (636)
110 KOG1952 Transcription factor N 63.2 2.9 6.4E-05 43.7 0.6 55 41-103 189-245 (950)
111 cd00065 FYVE FYVE domain; Zinc 58.6 6.4 0.00014 26.6 1.5 34 44-77 3-36 (57)
112 PHA02825 LAP/PHD finger-like p 57.4 13 0.00027 31.5 3.3 50 41-104 6-58 (162)
113 smart00064 FYVE Protein presen 56.5 8.4 0.00018 27.1 1.9 36 42-77 9-44 (68)
114 PF05605 zf-Di19: Drought indu 55.4 7.2 0.00016 26.4 1.3 13 42-54 1-13 (54)
115 PF07191 zinc-ribbons_6: zinc- 54.2 3.2 6.9E-05 30.3 -0.6 42 43-106 1-42 (70)
116 PF14494 DUF4436: Domain of un 54.2 22 0.00047 32.4 4.6 33 221-253 170-216 (256)
117 PF03854 zf-P11: P-11 zinc fin 54.1 5.4 0.00012 26.9 0.5 43 44-105 3-46 (50)
118 PF12906 RINGv: RING-variant d 54.0 8.4 0.00018 25.6 1.4 42 46-100 1-47 (47)
119 PF06906 DUF1272: Protein of u 47.6 32 0.0007 24.0 3.5 46 44-104 6-51 (57)
120 PHA03055 Hypothetical protein; 46.0 16 0.00035 27.2 2.0 19 242-260 53-71 (79)
121 KOG3579 Predicted E3 ubiquitin 45.8 11 0.00023 34.9 1.2 33 41-77 266-302 (352)
122 PLN02189 cellulose synthase 44.6 17 0.00036 39.3 2.6 53 42-106 33-88 (1040)
123 PF01363 FYVE: FYVE zinc finge 42.8 6.3 0.00014 27.8 -0.6 34 42-76 8-42 (69)
124 PLN02436 cellulose synthase A 42.4 19 0.00041 39.0 2.6 52 43-106 36-90 (1094)
125 PHA03062 putative IMV membrane 42.3 20 0.00044 26.6 2.0 19 242-260 54-72 (78)
126 PF15616 TerY-C: TerY-C metal 42.3 13 0.00028 30.5 1.1 45 37-104 71-115 (131)
127 PLN02638 cellulose synthase A 41.9 29 0.00063 37.6 3.9 52 43-106 17-71 (1079)
128 PLN02400 cellulose synthase 41.9 1.2E+02 0.0026 33.2 8.4 53 42-106 35-90 (1085)
129 KOG2487 RNA polymerase II tran 41.2 6.4 0.00014 36.1 -0.9 43 12-54 242-284 (314)
130 PF10571 UPF0547: Uncharacteri 40.0 12 0.00027 21.8 0.5 8 46-53 3-10 (26)
131 PF10497 zf-4CXXC_R1: Zinc-fin 37.7 17 0.00038 28.4 1.2 54 42-103 6-70 (105)
132 PF14569 zf-UDP: Zinc-binding 36.3 53 0.0011 24.5 3.4 51 42-104 8-61 (80)
133 PF02318 FYVE_2: FYVE-type zin 35.9 19 0.0004 28.6 1.1 50 42-103 53-103 (118)
134 PHA02862 5L protein; Provision 35.6 38 0.00082 28.3 2.8 45 44-104 3-52 (156)
135 PLN02915 cellulose synthase A 34.8 42 0.00092 36.3 3.8 53 42-106 14-69 (1044)
136 COG3813 Uncharacterized protei 34.3 79 0.0017 23.3 4.0 46 45-105 7-52 (84)
137 PLN02195 cellulose synthase A 34.3 35 0.00076 36.7 3.1 50 42-103 5-57 (977)
138 COG4736 CcoQ Cbb3-type cytochr 33.9 54 0.0012 23.2 3.0 21 240-260 10-30 (60)
139 KOG2068 MOT2 transcription fac 33.7 27 0.00058 32.9 1.9 50 42-104 248-297 (327)
140 KOG3899 Uncharacterized conser 33.7 21 0.00045 33.3 1.1 39 65-105 325-365 (381)
141 PF09538 FYDLN_acid: Protein o 33.5 28 0.00061 27.4 1.7 13 42-54 8-20 (108)
142 COG4665 FcbT2 TRAP-type mannit 33.1 29 0.00062 29.8 1.8 16 220-235 92-107 (182)
143 PF04713 Pox_I5: Poxvirus prot 32.8 33 0.00072 25.5 1.9 18 243-260 54-71 (77)
144 PF02790 COX2_TM: Cytochrome C 31.1 69 0.0015 23.1 3.5 17 248-264 67-83 (84)
145 PF08372 PRT_C: Plant phosphor 29.7 58 0.0013 27.4 3.1 26 213-238 96-121 (156)
146 PF14257 DUF4349: Domain of un 29.3 47 0.001 29.7 2.7 22 220-241 236-257 (262)
147 PF05293 ASFV_L11L: African sw 29.2 1.8E+02 0.0038 20.9 5.0 13 213-225 7-19 (78)
148 KOG3113 Uncharacterized conser 27.2 54 0.0012 29.9 2.6 53 38-105 106-158 (293)
149 PF09680 Tiny_TM_bacill: Prote 26.9 64 0.0014 18.6 2.0 11 236-246 8-18 (24)
150 COG4306 Uncharacterized protei 26.4 23 0.00049 28.9 0.1 40 43-82 39-83 (160)
151 KOG0314 Predicted E3 ubiquitin 26.3 47 0.001 32.7 2.2 36 38-77 214-252 (448)
152 PF12676 DUF3796: Protein of u 26.0 1.4E+02 0.003 23.9 4.5 62 195-260 47-108 (118)
153 PRK11088 rrmA 23S rRNA methylt 25.8 40 0.00087 30.2 1.6 25 44-69 3-27 (272)
154 COG0068 HypF Hydrogenase matur 25.6 1.3E+02 0.0028 31.4 5.3 58 41-104 99-183 (750)
155 PHA02655 hypothetical protein; 25.1 45 0.00097 24.5 1.4 23 222-244 61-83 (94)
156 TIGR02978 phageshock_pspC phag 25.1 1.4E+02 0.0031 23.9 4.5 19 230-248 40-58 (121)
157 PF03839 Sec62: Translocation 23.9 84 0.0018 28.0 3.2 27 217-243 116-143 (224)
158 PF00301 Rubredoxin: Rubredoxi 23.9 66 0.0014 21.5 1.9 13 91-103 31-43 (47)
159 PF14353 CpXC: CpXC protein 23.8 73 0.0016 25.2 2.6 12 43-54 1-12 (128)
160 KOG2231 Predicted E3 ubiquitin 23.6 48 0.001 34.2 1.8 49 45-104 2-51 (669)
161 PF04246 RseC_MucC: Positive r 23.4 1.8E+02 0.0039 23.2 4.9 12 227-238 73-84 (135)
162 PRK04989 psbM photosystem II r 23.2 1.3E+02 0.0028 19.0 3.0 9 240-248 13-21 (35)
163 KOG1812 Predicted E3 ubiquitin 22.9 49 0.0011 31.8 1.6 40 42-83 305-345 (384)
164 PF03845 Spore_permease: Spore 22.7 1.2E+02 0.0026 27.7 4.1 56 210-265 107-163 (320)
165 KOG3249 Uncharacterized conser 22.5 1.8E+02 0.0039 24.9 4.7 32 219-250 107-138 (181)
166 PRK10836 lysine transporter; P 22.4 1E+02 0.0022 30.1 3.8 22 239-260 446-467 (489)
167 PF06281 DUF1035: Protein of u 21.6 60 0.0013 23.5 1.5 18 219-236 49-66 (73)
168 TIGR02300 FYDLN_acid conserved 21.5 57 0.0012 26.6 1.5 19 42-60 8-26 (129)
169 PF15013 CCSMST1: CCSMST1 fami 21.5 69 0.0015 23.8 1.8 15 229-243 34-48 (77)
170 TIGR01732 tiny_TM_bacill conse 21.3 92 0.002 18.3 1.9 10 236-245 10-19 (26)
171 COG4839 FtsL Protein required 21.2 76 0.0017 25.6 2.1 19 240-258 40-58 (120)
172 PF07503 zf-HYPF: HypF finger; 21.1 84 0.0018 19.6 1.9 29 69-102 1-29 (35)
173 PF05399 EVI2A: Ectropic viral 20.8 1.5E+02 0.0033 26.3 4.1 13 237-249 143-155 (227)
174 PHA03164 hypothetical protein; 20.7 44 0.00094 24.9 0.6 20 211-230 61-80 (88)
175 KOG4767 Cytochrome c oxidase, 20.5 1.4E+02 0.003 26.3 3.8 16 243-258 74-89 (231)
176 COG5341 Uncharacterized protei 20.4 38 0.00081 27.5 0.3 24 211-234 5-28 (132)
177 PF08637 NCA2: ATP synthase re 20.3 59 0.0013 30.0 1.6 18 243-260 163-180 (290)
178 KOG3726 Uncharacterized conser 20.2 54 0.0012 33.9 1.4 35 43-77 654-688 (717)
179 TIGR00869 sec62 protein transl 20.2 1.7E+02 0.0037 26.3 4.4 38 219-256 126-164 (232)
No 1
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.26 E-value=2.4e-12 Score=84.97 Aligned_cols=42 Identities=43% Similarity=1.069 Sum_probs=31.7
Q ss_pred ccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccc
Q 036732 46 CPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100 (266)
Q Consensus 46 CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~C 100 (266)
||||+++|. +|++|+|||+||+.||.++ |+..+... +.||.|
T Consensus 1 CpiC~~~~~----~Pv~l~CGH~FC~~Cl~~~-~~~~~~~~--------~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK----DPVSLPCGHSFCRSCLERL-WKEPSGSG--------FSCPEC 42 (42)
T ss_dssp ETTTTSB-S----SEEE-SSSSEEEHHHHHHH-HCCSSSST-----------SSS
T ss_pred CCccchhhC----CccccCCcCHHHHHHHHHH-HHccCCcC--------CCCcCC
Confidence 899999999 9999999999999999998 76554321 479987
No 2
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=1.2e-10 Score=110.61 Aligned_cols=72 Identities=32% Similarity=0.590 Sum_probs=59.8
Q ss_pred ccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCC
Q 036732 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKF 115 (266)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 115 (266)
....+++.+.|+||.+.|. .|++++|||+||..|+..+ +.... .||.|+..+. ...
T Consensus 19 ~l~~Le~~l~C~IC~d~~~----~PvitpCgH~FCs~CI~~~-l~~~~------------~CP~Cr~~~~-------~~~ 74 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFD----VPVLTSCSHTFCSLCIRRC-LSNQP------------KCPLCRAEDQ-------ESK 74 (397)
T ss_pred cccccccccCCCcCchhhh----CccCCCCCCchhHHHHHHH-HhCCC------------CCCCCCCccc-------ccc
Confidence 4466788999999999999 9999999999999999985 43322 5999997654 257
Q ss_pred CcchHHHHHHHHHHhc
Q 036732 116 PRKNYFLLWMVESMNG 131 (266)
Q Consensus 116 ~~~N~~l~~~ve~~~~ 131 (266)
++.|+.+.++++.++.
T Consensus 75 Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 75 LRSNWLVSEIVESFKN 90 (397)
T ss_pred CccchHHHHHHHHHHH
Confidence 8899999999998864
No 3
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.04 E-value=2.7e-10 Score=80.64 Aligned_cols=61 Identities=20% Similarity=0.142 Sum_probs=51.1
Q ss_pred cccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCcchHHH
Q 036732 43 SLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPRKNYFL 122 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~N~~l 122 (266)
++.||||.+.+. +|++++|||+||+.||.++ +...+ .||.|+..+. .+++.+|..+
T Consensus 1 ~~~Cpi~~~~~~----~Pv~~~~G~v~~~~~i~~~-~~~~~------------~cP~~~~~~~-------~~~l~~~~~l 56 (63)
T smart00504 1 EFLCPISLEVMK----DPVILPSGQTYERRAIEKW-LLSHG------------TDPVTGQPLT-------HEDLIPNLAL 56 (63)
T ss_pred CcCCcCCCCcCC----CCEECCCCCEEeHHHHHHH-HHHCC------------CCCCCcCCCC-------hhhceeCHHH
Confidence 368999999999 9999999999999999996 54422 5999998764 3678889888
Q ss_pred HHHHH
Q 036732 123 LWMVE 127 (266)
Q Consensus 123 ~~~ve 127 (266)
++.++
T Consensus 57 ~~~i~ 61 (63)
T smart00504 57 KSAIQ 61 (63)
T ss_pred HHHHH
Confidence 88776
No 4
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.03 E-value=1.2e-10 Score=77.18 Aligned_cols=35 Identities=51% Similarity=1.025 Sum_probs=23.3
Q ss_pred ccccccccccCCCCcEEecCCChhhHHHHHHhhhhhc
Q 036732 46 CPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVV 82 (266)
Q Consensus 46 CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~ 82 (266)
||||.+ |...+|.|++|+|||+||+.|+.++ ++..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l-~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL-SKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH-HHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH-HhcC
Confidence 899999 8878888999999999999999997 5543
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.99 E-value=4.9e-10 Score=96.49 Aligned_cols=62 Identities=27% Similarity=0.567 Sum_probs=43.1
Q ss_pred ccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccC-CCCCC----CCCCcccCcccccccc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKF-PTLPV----QLPLFISCPWCNLLSF 105 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~-~~~~~----~~~~~~~CP~CR~~~~ 105 (266)
....+.++|+||++.+. +|++++|||.||+.||.+ |..... +.... .......||.||..+.
T Consensus 13 ~~~~~~~~CpICld~~~----dPVvT~CGH~FC~~CI~~--wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 13 VDSGGDFDCNICLDQVR----DPVVTLCGHLFCWPCIHK--WTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred ccCCCccCCccCCCcCC----CcEEcCCCchhHHHHHHH--HHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 34457899999999999 999999999999999998 432211 00000 0011247999997754
No 6
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.97 E-value=2.6e-10 Score=104.65 Aligned_cols=72 Identities=33% Similarity=0.595 Sum_probs=60.9
Q ss_pred ccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCC
Q 036732 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKF 115 (266)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 115 (266)
+...++..|.|.||.++|+ .|+++||||+||.-||+.+ ...+. .||.|+..+. ...
T Consensus 16 slk~lD~lLRC~IC~eyf~----ip~itpCsHtfCSlCIR~~-L~~~p------------~CP~C~~~~~-------Es~ 71 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFN----IPMITPCSHTFCSLCIRKF-LSYKP------------QCPTCCVTVT-------ESD 71 (442)
T ss_pred hhhhhHHHHHHhHHHHHhc----CceeccccchHHHHHHHHH-hccCC------------CCCceecccc-------hhh
Confidence 4566778999999999999 9999999999999999996 44443 5999997654 378
Q ss_pred CcchHHHHHHHHHHhc
Q 036732 116 PRKNYFLLWMVESMNG 131 (266)
Q Consensus 116 ~~~N~~l~~~ve~~~~ 131 (266)
++.|+.+.++++.++-
T Consensus 72 Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 72 LRNNRILDEIVKSLNF 87 (442)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 9999999999998763
No 7
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.4e-09 Score=96.05 Aligned_cols=72 Identities=36% Similarity=0.741 Sum_probs=59.0
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCC
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFP 116 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 116 (266)
....++.++|+||++.|. .|++++|||+||..|+... |. . .+.||.||. .. ..+
T Consensus 7 ~~~~~~~~~C~iC~~~~~----~p~~l~C~H~~c~~C~~~~-~~-~-----------~~~Cp~cr~-~~--------~~~ 60 (386)
T KOG2177|consen 7 LEVLQEELTCPICLEYFR----EPVLLPCGHNFCRACLTRS-WE-G-----------PLSCPVCRP-PS--------RNL 60 (386)
T ss_pred hhhccccccChhhHHHhh----cCccccccchHhHHHHHHh-cC-C-----------CcCCcccCC-ch--------hcc
Confidence 455678999999999999 9989999999999999997 66 1 147999995 33 256
Q ss_pred cchHHHHHHHHHHhcccC
Q 036732 117 RKNYFLLWMVESMNGDRV 134 (266)
Q Consensus 117 ~~N~~l~~~ve~~~~~~~ 134 (266)
..|..+.++++.++....
T Consensus 61 ~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 61 RPNVLLANLVERLRQLRL 78 (386)
T ss_pred CccHHHHHHHHHHHhcCC
Confidence 699999999998886543
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.81 E-value=4.1e-09 Score=77.52 Aligned_cols=69 Identities=22% Similarity=0.196 Sum_probs=52.7
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCcchHH
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPRKNYF 121 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~N~~ 121 (266)
+.+.|||+.+++. +|+++++||+|++.||+. |...+. ..||.|+..+. ..++..|..
T Consensus 3 ~~f~CpIt~~lM~----dPVi~~~G~tyer~~I~~--~l~~~~----------~~~P~t~~~l~-------~~~l~pn~~ 59 (73)
T PF04564_consen 3 DEFLCPITGELMR----DPVILPSGHTYERSAIER--WLEQNG----------GTDPFTRQPLS-------ESDLIPNRA 59 (73)
T ss_dssp GGGB-TTTSSB-S----SEEEETTSEEEEHHHHHH--HHCTTS----------SB-TTT-SB-S-------GGGSEE-HH
T ss_pred cccCCcCcCcHhh----CceeCCcCCEEcHHHHHH--HHHcCC----------CCCCCCCCcCC-------cccceECHH
Confidence 5789999999999 999999999999999999 544421 26999997765 368899999
Q ss_pred HHHHHHHHhccc
Q 036732 122 LLWMVESMNGDR 133 (266)
Q Consensus 122 l~~~ve~~~~~~ 133 (266)
+++.++.+....
T Consensus 60 Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 60 LKSAIEEWCAEN 71 (73)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 999999887654
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.80 E-value=1.9e-09 Score=71.39 Aligned_cols=43 Identities=42% Similarity=0.910 Sum_probs=34.3
Q ss_pred cccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccc
Q 036732 45 ECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCN 101 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR 101 (266)
+|+||++.+.. ...++.++|||.||..|+.+ |...+. .||+||
T Consensus 2 ~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~--~~~~~~-----------~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED-GEKVVKLPCGHVFHRSCIKE--WLKRNN-----------SCPVCR 44 (44)
T ss_dssp CETTTTCBHHT-TSCEEEETTSEEEEHHHHHH--HHHHSS-----------B-TTTH
T ss_pred CCcCCChhhcC-CCeEEEccCCCeeCHHHHHH--HHHhCC-----------cCCccC
Confidence 69999999974 44788889999999999999 544432 699997
No 10
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.80 E-value=1.4e-09 Score=77.48 Aligned_cols=62 Identities=31% Similarity=0.615 Sum_probs=33.8
Q ss_pred cCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCc
Q 036732 39 SREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPR 117 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~ 117 (266)
.+++.+.|++|.++++ +|+.+ .|.|.||..|+..- ... .||+|+.+.- ..+++
T Consensus 3 ~le~lLrCs~C~~~l~----~pv~l~~CeH~fCs~Ci~~~--~~~-------------~CPvC~~Paw-------~qD~~ 56 (65)
T PF14835_consen 3 RLEELLRCSICFDILK----EPVCLGGCEHIFCSSCIRDC--IGS-------------ECPVCHTPAW-------IQDIQ 56 (65)
T ss_dssp HHHHTTS-SSS-S--S----S-B---SSS--B-TTTGGGG--TTT-------------B-SSS--B-S--------SS--
T ss_pred HHHHhcCCcHHHHHhc----CCceeccCccHHHHHHhHHh--cCC-------------CCCCcCChHH-------HHHHH
Confidence 3567899999999999 99876 89999999999763 111 4999997754 47889
Q ss_pred chHHHHHHH
Q 036732 118 KNYFLLWMV 126 (266)
Q Consensus 118 ~N~~l~~~v 126 (266)
.|.++.+|+
T Consensus 57 ~NrqLd~~i 65 (65)
T PF14835_consen 57 INRQLDSMI 65 (65)
T ss_dssp --HHHHHHH
T ss_pred hhhhhhccC
Confidence 999998874
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.2e-09 Score=92.44 Aligned_cols=52 Identities=27% Similarity=0.672 Sum_probs=41.5
Q ss_pred CCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 40 REESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
....+.|.||+|.-+ +|+++.|||.||+.||.+ |....... ..||+|+..+.
T Consensus 44 ~~~~FdCNICLd~ak----dPVvTlCGHLFCWpClyq--Wl~~~~~~--------~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK----DPVVTLCGHLFCWPCLYQ--WLQTRPNS--------KECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccC----CCEEeecccceehHHHHH--HHhhcCCC--------eeCCccccccc
Confidence 346789999999999 999999999999999999 54333211 26999997654
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.76 E-value=3.5e-09 Score=68.43 Aligned_cols=28 Identities=46% Similarity=1.125 Sum_probs=25.0
Q ss_pred ccccccccccCCCCc-EEecCCChhhHHHHHHh
Q 036732 46 CPICWESFNMVENVP-YVLWCGHTLCKNCILGL 77 (266)
Q Consensus 46 CpICl~~f~~~~~~P-~~L~CgHtFC~~CL~~l 77 (266)
|+||++.+. +| +.++|||+||+.|+.++
T Consensus 1 C~iC~~~~~----~~~~~~~CGH~fC~~C~~~~ 29 (39)
T PF13923_consen 1 CPICLDELR----DPVVVTPCGHSFCKECIEKY 29 (39)
T ss_dssp ETTTTSB-S----SEEEECTTSEEEEHHHHHHH
T ss_pred CCCCCCccc----CcCEECCCCCchhHHHHHHH
Confidence 899999999 99 56799999999999995
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=7.2e-09 Score=87.61 Aligned_cols=50 Identities=36% Similarity=0.841 Sum_probs=39.9
Q ss_pred CCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 40 REESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.++...||||++.+. +..|+.+.|||.||+.||+.. .+... .||+|++.+
T Consensus 128 ~~~~~~CPiCl~~~s--ek~~vsTkCGHvFC~~Cik~a-lk~~~------------~CP~C~kkI 177 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVS--EKVPVSTKCGHVFCSQCIKDA-LKNTN------------KCPTCRKKI 177 (187)
T ss_pred cccccCCCceecchh--hccccccccchhHHHHHHHHH-HHhCC------------CCCCccccc
Confidence 356689999999988 456777999999999999996 43333 599999754
No 14
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.74 E-value=5.8e-09 Score=71.00 Aligned_cols=47 Identities=38% Similarity=0.755 Sum_probs=37.1
Q ss_pred CcccccccccccccCCCCcEEecCCCh-hhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHT-LCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHt-FC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
|+..|.||++... +++.+||||. ||..|+..+ +...+ .||+||+.+.
T Consensus 1 ~~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~-~~~~~------------~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPR----DVVLLPCGHLCFCEECAERL-LKRKK------------KCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBS----SEEEETTCEEEEEHHHHHHH-HHTTS------------BBTTTTBB-S
T ss_pred CcCCCccCCccCC----ceEEeCCCChHHHHHHhHHh-cccCC------------CCCcCChhhc
Confidence 4678999999988 9999999999 999999996 44222 6999997753
No 15
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.74 E-value=6.2e-09 Score=93.99 Aligned_cols=75 Identities=25% Similarity=0.362 Sum_probs=59.4
Q ss_pred cccccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCC
Q 036732 33 DVSSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGN 112 (266)
Q Consensus 33 ~~~~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~ 112 (266)
...+...++..+.|-||-+.+. .|+.++|||+||.-||+.+ ...+. .||.||....
T Consensus 15 ~IPSL~~LDs~lrC~IC~~~i~----ip~~TtCgHtFCslCIR~h-L~~qp------------~CP~Cr~~~~------- 70 (391)
T COG5432 15 KIPSLKGLDSMLRCRICDCRIS----IPCETTCGHTFCSLCIRRH-LGTQP------------FCPVCREDPC------- 70 (391)
T ss_pred cCcchhcchhHHHhhhhhheee----cceecccccchhHHHHHHH-hcCCC------------CCccccccHH-------
Confidence 3345667778899999999999 9999999999999999996 54443 4999997765
Q ss_pred CCCCcchHHHHHHHHHHhc
Q 036732 113 LKFPRKNYFLLWMVESMNG 131 (266)
Q Consensus 113 ~~~~~~N~~l~~~ve~~~~ 131 (266)
..-++.++.+.++.+.+..
T Consensus 71 esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 71 ESRLRGSSGSREINESHAR 89 (391)
T ss_pred hhhcccchhHHHHHHhhhh
Confidence 2556777777777776543
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.74 E-value=9e-09 Score=68.33 Aligned_cols=44 Identities=36% Similarity=0.934 Sum_probs=35.0
Q ss_pred cccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccc
Q 036732 45 ECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNL 102 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~ 102 (266)
.|++|++.| .+++.|++++|||+||..|+.++. .+ .+.||+||+
T Consensus 1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~---~~----------~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK---GK----------SVKCPICRK 44 (44)
T ss_pred CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc---CC----------CCCCcCCCC
Confidence 499999999 355579999999999999999962 11 136999984
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.71 E-value=6.9e-09 Score=67.44 Aligned_cols=40 Identities=40% Similarity=1.080 Sum_probs=33.5
Q ss_pred ccccccccccCCCCcE-EecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccc
Q 036732 46 CPICWESFNMVENVPY-VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100 (266)
Q Consensus 46 CpICl~~f~~~~~~P~-~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~C 100 (266)
|+||++.+. +|. +++|||+||..|+.++ +...+ .+.||.|
T Consensus 1 C~iC~~~~~----~~~~~~~C~H~fC~~C~~~~-~~~~~----------~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE----DPVILLPCGHSFCRDCLRKW-LENSG----------SVKCPLC 41 (41)
T ss_dssp ETTTSSBCS----SEEEETTTSEEEEHHHHHHH-HHHTS----------SSBTTTT
T ss_pred CCcCCcccc----CCCEEecCCCcchHHHHHHH-HHhcC----------CccCCcC
Confidence 899999999 999 7899999999999997 55422 1369987
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=9.5e-09 Score=92.78 Aligned_cols=53 Identities=34% Similarity=0.711 Sum_probs=43.9
Q ss_pred cccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 35 SSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 35 ~~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+.....+....|.+|++... +|--+||||.||+.||.+ |...+. .||.||..+
T Consensus 231 ~~~~i~~a~~kC~LCLe~~~----~pSaTpCGHiFCWsCI~~--w~~ek~-----------eCPlCR~~~ 283 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENRS----NPSATPCGHIFCWSCILE--WCSEKA-----------ECPLCREKF 283 (293)
T ss_pred CCccCCCCCCceEEEecCCC----CCCcCcCcchHHHHHHHH--HHcccc-----------CCCcccccC
Confidence 33445566799999999999 999999999999999999 766653 599999654
No 19
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.63 E-value=1.8e-08 Score=89.86 Aligned_cols=53 Identities=32% Similarity=0.621 Sum_probs=39.1
Q ss_pred CCCcccccccccccccCCC----CcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 40 REESLECPICWESFNMVEN----VPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~----~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..++.+|+||++.+...+. .++.++|||.||..||.+ |...+. .||+||..+.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~--Wl~~~~-----------tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDI--WKKEKN-----------TCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHH--HHhcCC-----------CCCCCCCEee
Confidence 3457899999998763221 135568999999999998 655432 6999997754
No 20
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.47 E-value=1.5e-07 Score=60.92 Aligned_cols=43 Identities=44% Similarity=1.004 Sum_probs=33.6
Q ss_pred cccccccccccCCCCcEEec-CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 45 ECPICWESFNMVENVPYVLW-CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L~-CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
+|+||.+.+. +++.++ |||.||..|+.++ .. .+. ..||.||..
T Consensus 1 ~C~iC~~~~~----~~~~~~~C~H~~c~~C~~~~-~~-~~~----------~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR----EPVVLLPCGHVFCRSCIDKW-LK-SGK----------NTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh----CceEecCCCChhcHHHHHHH-HH-hCc----------CCCCCCCCc
Confidence 5999999997 777775 9999999999985 33 311 259999853
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=98.47 E-value=1.1e-07 Score=83.35 Aligned_cols=62 Identities=26% Similarity=0.460 Sum_probs=41.4
Q ss_pred cccCCCcccccccccccccC----CC-CcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 37 VVSREESLECPICWESFNMV----EN-VPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~----~~-~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
+....++.+|+||++..... +| -++..+|+|+||..||.. |...+..+. ....||.||..+.
T Consensus 164 ~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~--Wr~~r~~~~-----~~rsCPiCR~~f~ 230 (242)
T PHA02926 164 VYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINI--WHRTRRETG-----ASDNCPICRTRFR 230 (242)
T ss_pred HHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHH--HHHhccccC-----cCCcCCCCcceee
Confidence 34455689999999976421 11 234459999999999999 665432111 1236999997754
No 22
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.4e-07 Score=90.99 Aligned_cols=51 Identities=37% Similarity=0.803 Sum_probs=42.7
Q ss_pred cccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 43 SLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
+..||||++... .|..+.|||.||..||..+ |....- .....||+|+..+.
T Consensus 186 ~~~CPICL~~~~----~p~~t~CGHiFC~~CiLqy-~~~s~~-------~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPS----VPVRTNCGHIFCGPCILQY-WNYSAI-------KGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCC----cccccccCceeeHHHHHHH-Hhhhcc-------cCCccCCchhhhcc
Confidence 889999999999 9999999999999999998 866521 12457999997654
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.36 E-value=4.7e-07 Score=56.48 Aligned_cols=28 Identities=54% Similarity=1.209 Sum_probs=25.8
Q ss_pred ccccccccccCCCCcEEecCCChhhHHHHHHh
Q 036732 46 CPICWESFNMVENVPYVLWCGHTLCKNCILGL 77 (266)
Q Consensus 46 CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l 77 (266)
|+||++... .++.++|||.||..|+..+
T Consensus 1 C~iC~~~~~----~~~~~~C~H~~c~~C~~~~ 28 (39)
T smart00184 1 CPICLEELK----DPVVLPCGHTFCRSCIRKW 28 (39)
T ss_pred CCcCccCCC----CcEEecCCChHHHHHHHHH
Confidence 789999877 9999999999999999985
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.1e-07 Score=82.16 Aligned_cols=48 Identities=33% Similarity=0.791 Sum_probs=41.2
Q ss_pred CCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
+.+..|.||++... .|..++|||.||..||... |..++.. .||.||..
T Consensus 213 ~~d~kC~lC~e~~~----~ps~t~CgHlFC~~Cl~~~-~t~~k~~----------~CplCRak 260 (271)
T COG5574 213 LADYKCFLCLEEPE----VPSCTPCGHLFCLSCLLIS-WTKKKYE----------FCPLCRAK 260 (271)
T ss_pred ccccceeeeecccC----CcccccccchhhHHHHHHH-HHhhccc----------cCchhhhh
Confidence 56889999999999 9999999999999999986 7666531 49999965
No 25
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=98.12 E-value=3.3e-06 Score=80.27 Aligned_cols=97 Identities=27% Similarity=0.524 Sum_probs=66.9
Q ss_pred CCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCC-------------------------------
Q 036732 40 REESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLP------------------------------- 88 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~------------------------------- 88 (266)
+||++.||||...|. +|++|+|+|+.|+.|-... ......+..|
T Consensus 1 meeelkc~vc~~f~~----epiil~c~h~lc~~ca~~~-~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~ 75 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYR----EPIILPCSHNLCQACARNI-LVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGY 75 (699)
T ss_pred CcccccCceehhhcc----CceEeecccHHHHHHHHhh-cccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCC
Confidence 468999999999999 9999999999999998764 2111111111
Q ss_pred -----------------------------------------CCCCCcccCcccccccccceecCCCCCCcchHHHHHHHH
Q 036732 89 -----------------------------------------VQLPLFISCPWCNLLSFRVVYKGNLKFPRKNYFLLWMVE 127 (266)
Q Consensus 89 -----------------------------------------~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~N~~l~~~ve 127 (266)
.+....+.||.|.+... ...++ +...++|..+.++++
T Consensus 76 ~~~~~~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~-~dd~~-l~~~p~n~~le~vi~ 153 (699)
T KOG4367|consen 76 GSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLI-LDDRG-LRGFPKNRVLEGVID 153 (699)
T ss_pred CccCCeeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheE-ecccc-cccCchhhHHHHHHH
Confidence 11112378999998543 44555 778889999999999
Q ss_pred HHhcccC-CCCCCCCCC
Q 036732 128 SMNGDRV-KSHSGFCED 143 (266)
Q Consensus 128 ~~~~~~~-~~~~~~c~d 143 (266)
++.+.+. ...+..|+.
T Consensus 154 ryq~s~~aa~kcqlce~ 170 (699)
T KOG4367|consen 154 RYQQSKAAALKCQLCEK 170 (699)
T ss_pred HHhhhhHHhhhhhhhcC
Confidence 9976443 223444543
No 26
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=3.3e-06 Score=77.79 Aligned_cols=48 Identities=33% Similarity=0.737 Sum_probs=35.3
Q ss_pred Ccccccccccc-cccCCCCcE---Ee-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWES-FNMVENVPY---VL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~-f~~~~~~P~---~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
++..||+|... +. +|. ++ +|||.||..|+..+ |..... .||.|+..+.
T Consensus 2 d~~~CP~Ck~~~y~----np~~kl~i~~CGH~~C~sCv~~l-~~~~~~-----------~CP~C~~~lr 54 (309)
T TIGR00570 2 DDQGCPRCKTTKYR----NPSLKLMVNVCGHTLCESCVDLL-FVRGSG-----------SCPECDTPLR 54 (309)
T ss_pred CCCCCCcCCCCCcc----CcccccccCCCCCcccHHHHHHH-hcCCCC-----------CCCCCCCccc
Confidence 35689999973 44 454 22 79999999999997 754321 6999997654
No 27
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.6e-06 Score=78.05 Aligned_cols=48 Identities=29% Similarity=0.580 Sum_probs=38.9
Q ss_pred ccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.+|.||+|.|..++ .=+.|||+|.|...||.. |-.+.. ..||+|+..+
T Consensus 230 ~~CaIClEdY~~Gd-klRiLPC~H~FH~~CIDp--WL~~~r----------~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGD-KLRILPCSHKFHVNCIDP--WLTQTR----------TFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCC-eeeEecCCCchhhccchh--hHhhcC----------ccCCCCCCcC
Confidence 69999999999877 456799999999999999 655442 1499999653
No 28
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.91 E-value=6.6e-06 Score=75.84 Aligned_cols=73 Identities=23% Similarity=0.437 Sum_probs=54.4
Q ss_pred cccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCC
Q 036732 37 VVSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKF 115 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 115 (266)
........+|.+|.+++. ++.++ -|-||||+.||.++ +...+ .||.|...+.. ... +..
T Consensus 9 ~~~~n~~itC~LC~GYli----DATTI~eCLHTFCkSCivk~-l~~~~------------~CP~C~i~ih~--t~p-l~n 68 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLI----DATTITECLHTFCKSCIVKY-LEESK------------YCPTCDIVIHK--THP-LLN 68 (331)
T ss_pred hhhcccceehhhccceee----cchhHHHHHHHHHHHHHHHH-HHHhc------------cCCccceeccC--ccc-ccc
Confidence 445667899999999999 77776 79999999999997 55543 69999955431 111 456
Q ss_pred CcchHHHHHHHHHH
Q 036732 116 PRKNYFLLWMVESM 129 (266)
Q Consensus 116 ~~~N~~l~~~ve~~ 129 (266)
++.+..+.+++..+
T Consensus 69 i~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 69 IRSDRTLQDIVYKL 82 (331)
T ss_pred CCcchHHHHHHHHH
Confidence 77778888877654
No 29
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2.4e-06 Score=79.33 Aligned_cols=53 Identities=23% Similarity=0.484 Sum_probs=40.9
Q ss_pred ccccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 36 SVVSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
....+..++.|+||+++++ .-+++ .|+|.||..||..-.....+ .||+||+..
T Consensus 36 ~l~~~~~~v~c~icl~llk----~tmttkeClhrfc~~ci~~a~r~gn~------------ecptcRk~l 89 (381)
T KOG0311|consen 36 DLAMFDIQVICPICLSLLK----KTMTTKECLHRFCFDCIWKALRSGNN------------ECPTCRKKL 89 (381)
T ss_pred cHHHhhhhhccHHHHHHHH----hhcccHHHHHHHHHHHHHHHHHhcCC------------CCchHHhhc
Confidence 3456678999999999999 77777 69999999999764222222 699999764
No 30
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.87 E-value=9.6e-06 Score=59.65 Aligned_cols=44 Identities=34% Similarity=0.838 Sum_probs=31.2
Q ss_pred cccccccccccC--------CCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccc
Q 036732 45 ECPICWESFNMV--------ENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCN 101 (266)
Q Consensus 45 ~CpICl~~f~~~--------~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR 101 (266)
.|+||++.+.+. +..++.+ +|||.|...||.+ |...+. .||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~--Wl~~~~-----------~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQ--WLKQNN-----------TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHH--HHTTSS-----------B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHH--HHhcCC-----------cCCCCC
Confidence 499999999421 1244444 8999999999999 655442 699997
No 31
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=9.2e-06 Score=74.04 Aligned_cols=48 Identities=33% Similarity=0.645 Sum_probs=40.8
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
-.-+|+||+.... .|+.++|+|-||.-||++..|...+ .|++||..+.
T Consensus 6 ~~~eC~IC~nt~n----~Pv~l~C~HkFCyiCiKGsy~ndk~------------~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGN----CPVNLYCFHKFCYICIKGSYKNDKK------------TCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCC----cCccccccchhhhhhhcchhhcCCC------------CCceecCCCC
Confidence 3568999999999 9999999999999999997555443 6999998765
No 32
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.5e-05 Score=72.98 Aligned_cols=73 Identities=37% Similarity=0.679 Sum_probs=58.9
Q ss_pred ccccccccccccc--CCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCcchH
Q 036732 43 SLECPICWESFNM--VENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPRKNY 120 (266)
Q Consensus 43 ~l~CpICl~~f~~--~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~N~ 120 (266)
.+.|-||-+.|.. +++.|+.|.|||++|..|+..+ .... .+.||+||..+. +.... ...+.+|+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l-~~~~-----------~i~cpfcR~~~~-~~~~~-~~~l~kNf 68 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKL-LGNS-----------RILCPFCRETTE-IPDGD-VKSLQKNF 68 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHH-hcCc-----------eeeccCCCCccc-CCchh-HhhhhhhH
Confidence 4689999998887 5899999999999999999986 2222 246899998863 44444 68899999
Q ss_pred HHHHHHHHH
Q 036732 121 FLLWMVESM 129 (266)
Q Consensus 121 ~l~~~ve~~ 129 (266)
.+..+++.+
T Consensus 69 ~ll~~~~~~ 77 (296)
T KOG4185|consen 69 ALLQAIEHM 77 (296)
T ss_pred HHHHHHHHH
Confidence 999998876
No 33
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.77 E-value=3.1e-05 Score=58.44 Aligned_cols=52 Identities=29% Similarity=0.627 Sum_probs=36.2
Q ss_pred ccccccccccccc--------CCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 43 SLECPICWESFNM--------VENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 43 ~l~CpICl~~f~~--------~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+..|+||...|+. ++.-|.++ .|+|.|...||.+ |.....+. -.||+||+..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~k--Wl~~~~~~--------~~CPmCR~~w 81 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILK--WLSTQSSK--------GQCPMCRQPW 81 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHH--HHccccCC--------CCCCCcCCee
Confidence 5567777666663 44567776 7999999999999 65443221 1699999763
No 34
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=9.7e-06 Score=81.72 Aligned_cols=53 Identities=25% Similarity=0.619 Sum_probs=42.6
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
.....+-++||+|-+.+. +-+++.|||.||..|+.+. ...+.. .||.|...+.
T Consensus 637 lk~yK~~LkCs~Cn~R~K----d~vI~kC~H~FC~~Cvq~r-~etRqR-----------KCP~Cn~aFg 689 (698)
T KOG0978|consen 637 LKEYKELLKCSVCNTRWK----DAVITKCGHVFCEECVQTR-YETRQR-----------KCPKCNAAFG 689 (698)
T ss_pred HHHHHhceeCCCccCchh----hHHHHhcchHHHHHHHHHH-HHHhcC-----------CCCCCCCCCC
Confidence 445567899999999999 8888999999999999997 433321 5999997654
No 35
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.7e-05 Score=75.85 Aligned_cols=49 Identities=27% Similarity=0.629 Sum_probs=40.6
Q ss_pred CCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 40 REESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...++.|.||...+. .|+++||||+||..||.+. .+ .. ..||.||....
T Consensus 81 ~~sef~c~vc~~~l~----~pv~tpcghs~c~~Cl~r~-ld-~~-----------~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 81 IRSEFECCVCSRALY----PPVVTPCGHSFCLECLDRS-LD-QE-----------TECPLCRDELV 129 (398)
T ss_pred ccchhhhhhhHhhcC----CCccccccccccHHHHHHH-hc-cC-----------CCCcccccccc
Confidence 357899999999999 9999999999999998874 22 21 15999998765
No 36
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.9e-05 Score=78.51 Aligned_cols=51 Identities=27% Similarity=0.581 Sum_probs=39.8
Q ss_pred cCCCcccccccccccccC-CCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccc
Q 036732 39 SREESLECPICWESFNMV-ENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNL 102 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~-~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~ 102 (266)
.......|+||+|.+... ...|..++|||.||..|++. |-.+.+ .||.||.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~--W~er~q-----------tCP~CR~ 338 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRS--WFERQQ-----------TCPTCRT 338 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHH--HHHHhC-----------cCCcchh
Confidence 334588999999999821 11188999999999999999 655543 6999997
No 37
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.5e-05 Score=71.42 Aligned_cols=51 Identities=29% Similarity=0.688 Sum_probs=39.8
Q ss_pred CCcccccccccc-cccC--------CCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 41 EESLECPICWES-FNMV--------ENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 41 ee~l~CpICl~~-f~~~--------~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.++-.|.||+|. +..+ +..|+.|||||.+...|++. |-.+.+ +||.||.+.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLkn--W~ERqQ-----------TCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKN--WLERQQ-----------TCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHH--HHHhcc-----------CCCcccCcc
Confidence 467799999997 4322 34568999999999999999 655554 699999873
No 38
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.43 E-value=0.00015 Score=66.28 Aligned_cols=67 Identities=28% Similarity=0.488 Sum_probs=46.3
Q ss_pred cccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCcchHH
Q 036732 43 SLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPRKNYF 121 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~N~~ 121 (266)
.|.||.|..++. +|+-+ -|+|+||+.||..-..... +.||.|..... . ++.+..++.
T Consensus 274 ~LkCplc~~Llr----np~kT~cC~~~fc~eci~~al~dsD------------f~CpnC~rkdv--l----ld~l~pD~d 331 (427)
T COG5222 274 SLKCPLCHCLLR----NPMKTPCCGHTFCDECIGTALLDSD------------FKCPNCSRKDV--L----LDGLTPDID 331 (427)
T ss_pred cccCcchhhhhh----CcccCccccchHHHHHHhhhhhhcc------------ccCCCcccccc--h----hhccCccHH
Confidence 399999999999 99998 5999999999987422222 36999985321 1 244555555
Q ss_pred HHHHHHHHhc
Q 036732 122 LLWMVESMNG 131 (266)
Q Consensus 122 l~~~ve~~~~ 131 (266)
...-+|....
T Consensus 332 k~~EvE~~lk 341 (427)
T COG5222 332 KKLEVEKALK 341 (427)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.42 E-value=8e-05 Score=71.21 Aligned_cols=53 Identities=25% Similarity=0.630 Sum_probs=41.2
Q ss_pred ccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
....+-|..+||||++.++....--+++.|.|+|...|+.. |... +||+||..
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~--w~~~-------------scpvcR~~ 220 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMK--WWDS-------------SCPVCRYC 220 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhh--cccC-------------cChhhhhh
Confidence 34556789999999999996554445669999999999998 4433 59999953
No 40
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.38 E-value=0.00013 Score=63.09 Aligned_cols=47 Identities=26% Similarity=0.699 Sum_probs=37.5
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
-.+.|.||.+.|. .|+++.|||.||..|.-.- ..... .|-+|.+.+.
T Consensus 195 IPF~C~iCKkdy~----spvvt~CGH~FC~~Cai~~-y~kg~------------~C~~Cgk~t~ 241 (259)
T COG5152 195 IPFLCGICKKDYE----SPVVTECGHSFCSLCAIRK-YQKGD------------ECGVCGKATY 241 (259)
T ss_pred Cceeehhchhhcc----chhhhhcchhHHHHHHHHH-hccCC------------cceecchhhc
Confidence 4578999999999 9999999999999998653 22221 5999987654
No 41
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00016 Score=66.20 Aligned_cols=51 Identities=27% Similarity=0.595 Sum_probs=38.6
Q ss_pred CCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
..+.+|.||++.|.-++ +-++|||.|.|...|+.+ |-..-. ..||+||..+
T Consensus 321 ~~GveCaICms~fiK~d-~~~vlPC~H~FH~~Cv~k--W~~~y~----------~~CPvCrt~i 371 (374)
T COG5540 321 DKGVECAICMSNFIKND-RLRVLPCDHRFHVGCVDK--WLLGYS----------NKCPVCRTAI 371 (374)
T ss_pred CCCceEEEEhhhhcccc-eEEEeccCceechhHHHH--HHhhhc----------ccCCccCCCC
Confidence 35789999999886333 466789999999999999 544211 2599999654
No 42
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.14 E-value=0.00032 Score=49.16 Aligned_cols=34 Identities=41% Similarity=0.677 Sum_probs=25.5
Q ss_pred CCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHh
Q 036732 40 REESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGL 77 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l 77 (266)
..-.+.|||.+..|. +|+.- .|||+|.+..|.++
T Consensus 8 ~~~~~~CPiT~~~~~----~PV~s~~C~H~fek~aI~~~ 42 (57)
T PF11789_consen 8 GTISLKCPITLQPFE----DPVKSKKCGHTFEKEAILQY 42 (57)
T ss_dssp SB--SB-TTTSSB-S----SEEEESSS--EEEHHHHHHH
T ss_pred cEeccCCCCcCChhh----CCcCcCCCCCeecHHHHHHH
Confidence 345789999999999 99986 89999999999997
No 43
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00025 Score=64.72 Aligned_cols=46 Identities=30% Similarity=0.694 Sum_probs=37.3
Q ss_pred cccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 43 SLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
.+.|-||.+.|. +|+++.|||+||..|-... ..... .|.+|.+.+.
T Consensus 241 Pf~c~icr~~f~----~pVvt~c~h~fc~~ca~~~-~qk~~------------~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFY----RPVVTKCGHYFCEVCALKP-YQKGE------------KCYVCSQQTH 286 (313)
T ss_pred Cccccccccccc----cchhhcCCceeehhhhccc-cccCC------------cceecccccc
Confidence 456999999999 9999999999999998764 22221 5999997764
No 44
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00042 Score=62.65 Aligned_cols=52 Identities=31% Similarity=0.643 Sum_probs=39.7
Q ss_pred ccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 38 VSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+....+.+||+|.+.-. .|.+. +|||.+|..|+..- .... ..+.||.|....
T Consensus 234 s~~t~~~~C~~Cg~~Pt----iP~~~~~C~HiyCY~Ci~ts-~~~~----------asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPT----IPHVIGKCGHIYCYYCIATS-RLWD----------ASFTCPLCGENV 286 (298)
T ss_pred ccccCCceeeccCCCCC----CCeeeccccceeehhhhhhh-hcch----------hhcccCccCCCC
Confidence 34457889999999999 99988 59999999999874 1111 125799998653
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00021 Score=49.42 Aligned_cols=46 Identities=35% Similarity=0.666 Sum_probs=35.6
Q ss_pred cccccccccccccCCCCcEEecCCC-hhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 43 SLECPICWESFNMVENVPYVLWCGH-TLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgH-tFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.-+|.||.+--. +-+.-.||| -.|..|-.++ |+..+. .||.||.++
T Consensus 7 ~dECTICye~pv----dsVlYtCGHMCmCy~Cg~rl-~~~~~g-----------~CPiCRapi 53 (62)
T KOG4172|consen 7 SDECTICYEHPV----DSVLYTCGHMCMCYACGLRL-KKALHG-----------CCPICRAPI 53 (62)
T ss_pred ccceeeeccCcc----hHHHHHcchHHhHHHHHHHH-HHccCC-----------cCcchhhHH
Confidence 368999999666 655669999 6799999987 765432 699999764
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0015 Score=61.39 Aligned_cols=55 Identities=33% Similarity=0.638 Sum_probs=38.5
Q ss_pred CCcccccccccccccCCCCcE-----E---ecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 41 EESLECPICWESFNMVENVPY-----V---LWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~-----~---L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..+.+|.||++... ++. . .+|.|.||.+|+.+ |...++.. ......||.||....
T Consensus 159 s~~k~CGICme~i~----ek~~~~~rfgilpnC~H~~Cl~Cir~--wr~~~q~~----~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETIN----EKAASERRFGILPNCNHSFCLNCIRK--WRQATQFE----SKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhcc----ccchhhhhcccCCCcchhhhhcHhHh--hhhhhccc----cccccCCCcccCccc
Confidence 46889999999877 333 2 47999999999999 76433310 111247999997654
No 47
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.82 E-value=0.00034 Score=50.99 Aligned_cols=61 Identities=26% Similarity=0.509 Sum_probs=23.4
Q ss_pred cccccccccccccCCCCcEEe----cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 43 SLECPICWESFNMVENVPYVL----WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L----~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
+++|+||........+.|... .|+..|...||.++.....+. ...-.+..-.||.|+..+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~--~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKS--RQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSS--S-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccC--CeeecccccCCcCCCCeee
Confidence 578999999766444456554 699999999999942121211 1111122346999997753
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00095 Score=62.40 Aligned_cols=48 Identities=33% Similarity=0.661 Sum_probs=38.8
Q ss_pred CCcccccccccccccCCCCcEEecCCC-hhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGH-TLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgH-tFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
+.+.+|=||+..-. +=++|||.| -.|..|-+.+....+ .||+||+.+.
T Consensus 288 ~~gkeCVIClse~r----dt~vLPCRHLCLCs~Ca~~Lr~q~n-------------~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESR----DTVVLPCRHLCLCSGCAKSLRYQTN-------------NCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCc----ceEEecchhhehhHhHHHHHHHhhc-------------CCCccccchH
Confidence 45889999999887 888999999 579999999743333 4999997754
No 49
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.00068 Score=67.50 Aligned_cols=41 Identities=34% Similarity=0.651 Sum_probs=36.3
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHh
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l 77 (266)
+..+.+.+-|+||+..|......|+.+-|||+.|+.|++.+
T Consensus 5 a~~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l 45 (861)
T KOG3161|consen 5 ALKWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL 45 (861)
T ss_pred chhhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH
Confidence 34566788999999999888889999999999999999986
No 50
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.60 E-value=0.00096 Score=65.23 Aligned_cols=54 Identities=20% Similarity=0.439 Sum_probs=41.5
Q ss_pred CCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 40 REESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..+..+|.+|.+.-. +++...|.|.||+.|++++ ...-..+ ..++||.|.....
T Consensus 533 nk~~~~C~lc~d~ae----d~i~s~ChH~FCrlCi~ey-v~~f~~~-------~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAE----DYIESSCHHKFCRLCIKEY-VESFMEN-------NNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChhh----hhHhhhhhHHHHHHHHHHH-HHhhhcc-------cCCCCcccccccc
Confidence 346789999999999 9999999999999999887 3222111 1258999987654
No 51
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.49 E-value=0.0012 Score=63.26 Aligned_cols=48 Identities=33% Similarity=0.734 Sum_probs=40.4
Q ss_pred CCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 40 REESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+++.+.|++|...+. +|... .|||.||..|+.. |....+ .||.|+...
T Consensus 18 ~~~~l~C~~C~~vl~----~p~~~~~cgh~fC~~C~~~--~~~~~~-----------~cp~~~~~~ 66 (391)
T KOG0297|consen 18 LDENLLCPICMSVLR----DPVQTTTCGHRFCAGCLLE--SLSNHQ-----------KCPVCRQEL 66 (391)
T ss_pred CcccccCcccccccc----CCCCCCCCCCcccccccch--hhccCc-----------CCccccccc
Confidence 678999999999999 99884 9999999999998 544432 599998654
No 52
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0014 Score=59.23 Aligned_cols=52 Identities=27% Similarity=0.720 Sum_probs=37.4
Q ss_pred CcccccccccccccCC------CCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 42 ESLECPICWESFNMVE------NVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 42 e~l~CpICl~~f~~~~------~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
++-.|.||-+.+...+ .+-+.|.|+|.|.+.||++ |-..+... .||.|++.+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrG--WcivGKkq---------tCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRG--WCIVGKKQ---------TCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhh--heeecCCC---------CCchHHHHh
Confidence 4667999988776322 1456889999999999999 74443211 699999653
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.48 E-value=0.0013 Score=62.37 Aligned_cols=46 Identities=30% Similarity=0.681 Sum_probs=35.0
Q ss_pred cccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 45 ECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
-|.||-+-=+ +-.+-||||..|..|+.. |....... .||.||..+.
T Consensus 371 LCKICaendK----dvkIEPCGHLlCt~CLa~--WQ~sd~gq---------~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDK----DVKIEPCGHLLCTSCLAA--WQDSDEGQ---------TCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCC----CcccccccchHHHHHHHh--hcccCCCC---------CCCceeeEec
Confidence 5999998766 666779999999999999 54333211 6999997653
No 54
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.002 Score=61.25 Aligned_cols=52 Identities=31% Similarity=0.655 Sum_probs=40.4
Q ss_pred Cccccccccccccc-CCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 42 ESLECPICWESFNM-VENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 42 e~l~CpICl~~f~~-~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.+.+||||++.+.. +++.=+.+.|||.|-..||++ |..++. ...||.|....
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~--wl~k~~---------~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEK--WLGKKT---------KMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHH--HHhhhh---------hhhCcccCChh
Confidence 46799999998886 666666779999999999999 554321 24799998553
No 55
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.78 E-value=0.0033 Score=63.99 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=38.3
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecC
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKG 111 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~ 111 (266)
..-.||+|+..+..... ---.+|+|.||..|+.. |..... +||+||..+.+++...
T Consensus 122 ~~~~CP~Ci~s~~DqL~-~~~k~c~H~FC~~Ci~s--WsR~aq-----------TCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLE-ESEKHTAHYFCEECVGS--WSRCAQ-----------TCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhhHHHHHHHHHhh-ccccccccccHHHHhhh--hhhhcc-----------cCchhhhhhheeeeec
Confidence 34578888887773221 01237999999999998 655432 6999998887655544
No 56
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.0038 Score=46.10 Aligned_cols=50 Identities=30% Similarity=0.702 Sum_probs=36.2
Q ss_pred ccccccccccc--------CCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 45 ECPICWESFNM--------VENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 45 ~CpICl~~f~~--------~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+|.||.-.|+. ++.-|.++ -|.|.|...||.+ |...+.+.. .||+||+..
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~--wl~~~tsq~--------~CPmcRq~~ 80 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILK--WLNTPTSQG--------QCPMCRQTW 80 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHH--HhcCccccc--------cCCcchhee
Confidence 67777766664 55577776 6999999999999 654443321 599999764
No 57
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.59 E-value=0.017 Score=39.06 Aligned_cols=44 Identities=25% Similarity=0.543 Sum_probs=31.9
Q ss_pred cccccccccccCCCCcEEecCC-----ChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccc
Q 036732 45 ECPICWESFNMVENVPYVLWCG-----HTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCN 101 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L~Cg-----HtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR 101 (266)
.|-||++ .+.+.+|.+.||. |.+...|+.+ |...+.. ..||+|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC~C~G~~~~vH~~Cl~~--W~~~~~~---------~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPCRCKGSLKYVHQECLER--WINESGN---------KTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEeccccCCchhHHHHHHHHH--HHHHcCC---------CcCCCCC
Confidence 4889998 2344588888985 7899999999 6544321 2699995
No 58
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.34 E-value=0.0058 Score=42.36 Aligned_cols=44 Identities=32% Similarity=0.596 Sum_probs=31.8
Q ss_pred cccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 43 SLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...|-.|...-. +..+++|||..|..|... ++-. .||.|...+.
T Consensus 7 ~~~~~~~~~~~~----~~~~~pCgH~I~~~~f~~--~rYn-------------gCPfC~~~~~ 50 (55)
T PF14447_consen 7 EQPCVFCGFVGT----KGTVLPCGHLICDNCFPG--ERYN-------------GCPFCGTPFE 50 (55)
T ss_pred ceeEEEcccccc----ccccccccceeeccccCh--hhcc-------------CCCCCCCccc
Confidence 445666666555 788999999999999765 2222 4999997653
No 59
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.013 Score=55.60 Aligned_cols=52 Identities=29% Similarity=0.562 Sum_probs=39.7
Q ss_pred CCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
...+.|||=.+.-. ++|.|++|.|||..|+.-+.++ -.+... .+.||.|-..
T Consensus 332 HSvF~CPVlKeqts-deNPPm~L~CGHVISkdAlnrL-S~ng~~---------sfKCPYCP~e 383 (394)
T KOG2817|consen 332 HSVFICPVLKEQTS-DENPPMMLICGHVISKDALNRL-SKNGSQ---------SFKCPYCPVE 383 (394)
T ss_pred cceeecccchhhcc-CCCCCeeeeccceecHHHHHHH-hhCCCe---------eeeCCCCCcc
Confidence 35689999777554 7889999999999999999986 322221 3689999754
No 60
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.14 E-value=0.023 Score=53.25 Aligned_cols=58 Identities=31% Similarity=0.575 Sum_probs=42.3
Q ss_pred cccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccc
Q 036732 35 SSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRV 107 (266)
Q Consensus 35 ~~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 107 (266)
+.....+|...|-||.+... --..+||+|..|..|-..+ .+--+. ..||.||.....+
T Consensus 53 SaddtDEen~~C~ICA~~~T----Ys~~~PC~H~~CH~Ca~Rl-RALY~~----------K~C~~CrTE~e~V 110 (493)
T COG5236 53 SADDTDEENMNCQICAGSTT----YSARYPCGHQICHACAVRL-RALYMQ----------KGCPLCRTETEAV 110 (493)
T ss_pred cccccccccceeEEecCCce----EEEeccCCchHHHHHHHHH-HHHHhc----------cCCCccccccceE
Confidence 33445568889999999877 6667899999999998775 322221 2699999766433
No 61
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.018 Score=54.53 Aligned_cols=48 Identities=25% Similarity=0.576 Sum_probs=33.7
Q ss_pred ccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccc
Q 036732 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCN 101 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR 101 (266)
-.|.||.+.+..++...-+-.|||+|...|+.. |.....+++ .||.|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~q--wfe~~Ps~R--------~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQ--WFEGDPSNR--------GCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHH--HHccCCccC--------CCCcee
Confidence 479999877764333322335999999999998 655443321 699999
No 62
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.021 Score=55.72 Aligned_cols=51 Identities=25% Similarity=0.651 Sum_probs=35.6
Q ss_pred CCccccccccccccc-------------CCCCcEEecCCChhhHHHHHHhhhhh-ccCCCCCCCCCCcccCccccccc
Q 036732 41 EESLECPICWESFNM-------------VENVPYVLWCGHTLCKNCILGLQWAV-VKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 41 ee~l~CpICl~~f~~-------------~~~~P~~L~CgHtFC~~CL~~l~~~~-~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+....|+||+..... ..++-+.+||.|.|...|+++ |-. .+ ..||+||...
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~--WMd~yk-----------l~CPvCR~pL 633 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQ--WMDTYK-----------LICPVCRCPL 633 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHH--HHhhhc-----------ccCCccCCCC
Confidence 456679999976543 112233459999999999999 544 33 3699999764
No 63
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.36 E-value=0.04 Score=51.51 Aligned_cols=50 Identities=22% Similarity=0.558 Sum_probs=36.6
Q ss_pred cccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 43 SLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+..||+|.+.+++.+.+=.-.+||-..|+-|.... ....+. .||-||...
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~i-rq~lng-----------rcpacrr~y 63 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNI-RQNLNG-----------RCPACRRKY 63 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHH-HhhccC-----------CChHhhhhc
Confidence 33499999999876655555689999999998775 333221 699999653
No 64
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.21 E-value=0.02 Score=59.64 Aligned_cols=53 Identities=25% Similarity=0.663 Sum_probs=37.8
Q ss_pred CCcccccccccccccCCC-CcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 41 EESLECPICWESFNMVEN-VPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~-~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
++..+|+||...+..++| -|--. .|.|-|...|+.+ |.....++ +||.||..+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyK--Wf~Ss~~s---------~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYK--WFASSARS---------NCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHH--HHHhcCCC---------CCCcccccc
Confidence 467799999998885444 22222 6999999999999 54443322 699999654
No 65
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.20 E-value=0.036 Score=37.50 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=20.6
Q ss_pred ccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 46 CPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 46 CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
||+|.+.++....+=.--+||+.+|..|.... ....+ -.||-||+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i-~~~~~-----------g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDI-LENEG-----------GRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHH-TTSS------------SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHH-HhccC-----------CCCCCCCCC
Confidence 78888888543332222379999999999885 32111 169999964
No 66
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.0076 Score=55.13 Aligned_cols=43 Identities=28% Similarity=0.641 Sum_probs=34.7
Q ss_pred CcccccccccccccCCCCcEEecCCC-hhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGH-TLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgH-tFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...-|.||++.-. +-+.|+||| .-|-.|-+.+ + .||+||+.+.
T Consensus 299 ~~~LC~ICmDaP~----DCvfLeCGHmVtCt~CGkrm-----~------------eCPICRqyi~ 342 (350)
T KOG4275|consen 299 TRRLCAICMDAPR----DCVFLECGHMVTCTKCGKRM-----N------------ECPICRQYIV 342 (350)
T ss_pred HHHHHHHHhcCCc----ceEEeecCcEEeehhhcccc-----c------------cCchHHHHHH
Confidence 3677999999988 999999999 4588887765 1 4999997543
No 67
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.12 E-value=0.069 Score=39.84 Aligned_cols=47 Identities=23% Similarity=0.479 Sum_probs=32.4
Q ss_pred cccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 45 ECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.|+-|..-...+..-|+.. -|.|.|...||.++ .++++ .||++|+..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rW-L~Tk~------------~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRW-LDTKG------------VCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHH-HhhCC------------CCCCCCcee
Confidence 4555555444444456666 69999999999994 34433 599999764
No 68
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.04 Score=50.39 Aligned_cols=44 Identities=30% Similarity=0.795 Sum_probs=31.1
Q ss_pred ccccccc-ccccCCCCcEE----ecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 45 ECPICWE-SFNMVENVPYV----LWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 45 ~CpICl~-~f~~~~~~P~~----L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.||+|.. .|. +|-+ -+|||+.|.+|...+ ...... .||.|....
T Consensus 2 ~Cp~CKt~~Y~----np~lk~~in~C~H~lCEsCvd~i-F~~g~~-----------~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYL----NPDLKLMINECGHRLCESCVDRI-FSLGPA-----------QCPECMVIL 50 (300)
T ss_pred CCcccccceec----CccceeeeccccchHHHHHHHHH-HhcCCC-----------CCCcccchh
Confidence 5899984 555 4432 289999999999986 443332 599998554
No 69
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.71 E-value=0.073 Score=48.25 Aligned_cols=53 Identities=23% Similarity=0.431 Sum_probs=38.4
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
.....+.|||....|....+--+..+|||.|+..++..+ ... ..||.|...+.
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~--k~~------------~~Cp~c~~~f~ 161 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL--KKS------------KKCPVCGKPFT 161 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh--ccc------------ccccccCCccc
Confidence 346789999999998633332233399999999999996 211 15999998765
No 70
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.037 Score=52.02 Aligned_cols=45 Identities=24% Similarity=0.562 Sum_probs=33.3
Q ss_pred CCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 40 REESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.....-|-||++... +-+.+||||.-| |..-. ... ..||+||..+
T Consensus 302 ~~~p~lcVVcl~e~~----~~~fvpcGh~cc--ct~cs--~~l------------~~CPvCR~rI 346 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPK----SAVFVPCGHVCC--CTLCS--KHL------------PQCPVCRQRI 346 (355)
T ss_pred cCCCCceEEecCCcc----ceeeecCCcEEE--chHHH--hhC------------CCCchhHHHH
Confidence 345678999999998 888899999877 76542 111 1499999654
No 71
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.04 Score=51.80 Aligned_cols=47 Identities=28% Similarity=0.554 Sum_probs=36.6
Q ss_pred CCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.|+-.||||.---- ..+..||+|.-|+.||.+. .-+.+ .|=.|+..+
T Consensus 420 sEd~lCpICyA~pi----~Avf~PC~H~SC~~CI~qH-lmN~k------------~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI----NAVFAPCSHRSCYGCITQH-LMNCK------------RCFFCKTTV 466 (489)
T ss_pred cccccCcceecccc----hhhccCCCCchHHHHHHHH-HhcCC------------eeeEeccee
Confidence 46788999998666 7778899999999999986 33332 499998553
No 72
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.59 E-value=0.038 Score=52.57 Aligned_cols=53 Identities=28% Similarity=0.502 Sum_probs=37.8
Q ss_pred CCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+-++.|..|-+.+-...-.---|||.|.|...|+.++ ..++.. -+||.||+..
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~-L~~n~~----------rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEI-LENNGT----------RSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHH-HHhCCC----------CCCccHHHHH
Confidence 3578999999987643323334699999999999987 433321 1699999553
No 73
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.40 E-value=0.046 Score=56.00 Aligned_cols=45 Identities=24% Similarity=0.682 Sum_probs=36.2
Q ss_pred ccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
..|.+|.+ .. .+++..|||.||..|+... +..... -.||.||..+
T Consensus 455 ~~c~ic~~-~~----~~~it~c~h~~c~~c~~~~-i~~~~~----------~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LD----SFFITRCGHDFCVECLKKS-IQQSEN----------APCPLCRNVL 499 (674)
T ss_pred cccccccc-cc----cceeecccchHHHHHHHhc-cccccC----------CCCcHHHHHH
Confidence 89999999 77 8889999999999999986 433321 1699999654
No 74
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.061 Score=51.42 Aligned_cols=36 Identities=28% Similarity=0.656 Sum_probs=29.5
Q ss_pred CCcccccccccccccCCCCcEEecCCChhhHHHHHHh
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l 77 (266)
.....|.||++... +.+.=+.+||+|.||+.|++.+
T Consensus 182 ~slf~C~ICf~e~~-G~~c~~~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 182 NSLFDCCICFEEQM-GQHCFKFLPCSHVFCKSCLKDY 217 (445)
T ss_pred hhcccceeeehhhc-CcceeeecccchHHHHHHHHHH
Confidence 35678999999887 4345567899999999999987
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.082 Score=47.50 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=39.3
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..+....||+|.+.+.....--+.-+|||.+|..|.+++ -... ..||+|.....
T Consensus 217 a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEkl-ir~D------------~v~pv~d~plk 270 (303)
T KOG3039|consen 217 AASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKL-IRKD------------MVDPVTDKPLK 270 (303)
T ss_pred hhccceecccchhhhcCccceEEeccCCcEeeHHHHHHh-cccc------------ccccCCCCcCc
Confidence 334788999999999844433333499999999999997 2222 25999986643
No 76
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.84 E-value=0.066 Score=49.65 Aligned_cols=54 Identities=30% Similarity=0.549 Sum_probs=40.6
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
.....++||+=.+.-. .||.|+++.|||..-+.-+..+ ...+. ..+.||.|-..
T Consensus 332 hfHs~FiCPVlKe~~t-~ENpP~ml~CgHVIskeal~~L--S~nG~--------~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCT-DENPPVMLECGHVISKEALSVL--SQNGV--------LSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhc-ccCCCeeeeccceeeHHHHHHH--hhcCc--------EEeeCCCCCcc
Confidence 3456789999777655 7889999999999999998885 22221 13689999754
No 77
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.73 E-value=0.1 Score=48.38 Aligned_cols=63 Identities=22% Similarity=0.459 Sum_probs=44.9
Q ss_pred ccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCC
Q 036732 38 VSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFP 116 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 116 (266)
...-+.++||||.+.+. .|+.- +=||..|..|-.++ . ..||.||..+. .
T Consensus 43 ~~~~~lleCPvC~~~l~----~Pi~QC~nGHlaCssC~~~~----~------------~~CP~Cr~~~g----------~ 92 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLS----PPIFQCDNGHLACSSCRTKV----S------------NKCPTCRLPIG----------N 92 (299)
T ss_pred ccchhhccCchhhccCc----ccceecCCCcEehhhhhhhh----c------------ccCCccccccc----------c
Confidence 34557889999999999 88543 45999999998653 1 15999996642 2
Q ss_pred cchHHHHHHHHHHh
Q 036732 117 RKNYFLLWMVESMN 130 (266)
Q Consensus 117 ~~N~~l~~~ve~~~ 130 (266)
..++.+..++++..
T Consensus 93 ~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 93 IRCRAMEKVAEAVL 106 (299)
T ss_pred HHHHHHHHHHHhce
Confidence 25666777776644
No 78
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.67 E-value=0.098 Score=42.75 Aligned_cols=49 Identities=31% Similarity=0.733 Sum_probs=40.0
Q ss_pred CcccccccccccccCCCCcEEe----cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVL----WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L----~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
...+|.||.|... +.+.| =||-..|-.|-..+ |+.-..-. .||.|+..+
T Consensus 79 ~lYeCnIC~etS~----ee~FLKPneCCgY~iCn~Cya~L-WK~~~~yp---------vCPvCkTSF 131 (140)
T PF05290_consen 79 KLYECNICKETSA----EERFLKPNECCGYSICNACYANL-WKFCNLYP---------VCPVCKTSF 131 (140)
T ss_pred CceeccCcccccc----hhhcCCcccccchHHHHHHHHHH-HHHcccCC---------CCCcccccc
Confidence 5679999999988 77788 39999999999999 98765311 499999553
No 79
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.67 E-value=0.064 Score=54.48 Aligned_cols=54 Identities=31% Similarity=0.536 Sum_probs=41.9
Q ss_pred ccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..+...++||||...+. +|..+.|-|.||..|+... ....+. ...||+|+....
T Consensus 16 ~~~~k~lEc~ic~~~~~----~p~~~kc~~~~l~~~~n~~-f~~~~~---------~~~~~lc~~~~e 69 (684)
T KOG4362|consen 16 NAMQKILECPICLEHVK----EPSLLKCDHIFLKFCLNKL-FESKKG---------PKQCALCKSDIE 69 (684)
T ss_pred HHHhhhccCCceeEEee----ccchhhhhHHHHhhhhhce-eeccCc---------cccchhhhhhhh
Confidence 34557899999999999 9999999999999999886 322221 136999996544
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.66 E-value=0.086 Score=47.05 Aligned_cols=43 Identities=26% Similarity=0.727 Sum_probs=29.5
Q ss_pred ccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 44 LECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
..|..|...-. .+|..| .|+|.||..|.... ... .||.|++.+
T Consensus 4 VhCn~C~~~~~---~~~f~LTaC~HvfC~~C~k~~---~~~------------~C~lCkk~i 47 (233)
T KOG4739|consen 4 VHCNKCFRFPS---QDPFFLTACRHVFCEPCLKAS---SPD------------VCPLCKKSI 47 (233)
T ss_pred EEeccccccCC---CCceeeeechhhhhhhhcccC---Ccc------------cccccccee
Confidence 45776765433 256555 89999999998752 110 499999875
No 81
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.30 E-value=0.28 Score=41.27 Aligned_cols=20 Identities=40% Similarity=0.896 Sum_probs=17.2
Q ss_pred CcccccccccccccCCCCcEEecC
Q 036732 42 ESLECPICWESFNMVENVPYVLWC 65 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~C 65 (266)
|+.+||||+|.-. +.|.|-|
T Consensus 1 ed~~CpICme~PH----NAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPH----NAVLLLC 20 (162)
T ss_pred CCccCceeccCCC----ceEEEEe
Confidence 4679999999999 9988855
No 82
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=0.18 Score=46.95 Aligned_cols=46 Identities=26% Similarity=0.548 Sum_probs=36.1
Q ss_pred CCcccccccccccccCCCCcEEecC-CChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWC-GHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~C-gHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
.+.-.||||+..-. +|.++.- |-.||..|+-.+ ..+-+ .||+-..+
T Consensus 298 ~~~~~CpvClk~r~----Nptvl~vSGyVfCY~Ci~~Y-v~~~~------------~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQ----NPTVLEVSGYVFCYPCIFSY-VVNYG------------HCPVTGYP 344 (357)
T ss_pred CccccChhHHhccC----CCceEEecceEEeHHHHHHH-HHhcC------------CCCccCCc
Confidence 35678999999999 9999864 999999999997 44333 59976543
No 83
>PHA03096 p28-like protein; Provisional
Probab=88.58 E-value=0.28 Score=45.21 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=26.5
Q ss_pred ccccccccccccC---CCCcEEe-cCCChhhHHHHHHhhhhhcc
Q 036732 44 LECPICWESFNMV---ENVPYVL-WCGHTLCKNCILGLQWAVVK 83 (266)
Q Consensus 44 l~CpICl~~f~~~---~~~P~~L-~CgHtFC~~CL~~l~~~~~~ 83 (266)
-+|.||++.-... ++.=-+| .|.|.||..|+.. |...+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~--wr~~~ 220 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKI--WMTES 220 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHH--HHHhh
Confidence 6899999865531 2111123 7999999999998 65544
No 84
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.65 E-value=0.21 Score=38.28 Aligned_cols=34 Identities=29% Similarity=0.617 Sum_probs=26.9
Q ss_pred ccCCCcccccccccccccCCCCcEEe--cCCChhhHHHHH
Q 036732 38 VSREESLECPICWESFNMVENVPYVL--WCGHTLCKNCIL 75 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~ 75 (266)
-.+.++-.|++|.+.+. ..... ||||.++..|+.
T Consensus 73 v~i~~~~~C~vC~k~l~----~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLG----NSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCC----CceEEEeCCCeEEeccccc
Confidence 35567888999999887 44443 999999999975
No 85
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=86.49 E-value=0.4 Score=43.97 Aligned_cols=47 Identities=30% Similarity=0.621 Sum_probs=37.7
Q ss_pred cccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccc
Q 036732 43 SLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNL 102 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~ 102 (266)
...||||.+.+......|..++|||+.-..|++.+ -.. . .+||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~-~~~-----------~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEM-ICE-----------G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHH-hcc-----------C-CCCCcccc
Confidence 44599999988877778889999999999999986 211 1 47999985
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.66 E-value=0.71 Score=48.02 Aligned_cols=30 Identities=27% Similarity=0.853 Sum_probs=26.9
Q ss_pred CcccccccccccccCCCCcEEe-cCCChhhHHHHH
Q 036732 42 ESLECPICWESFNMVENVPYVL-WCGHTLCKNCIL 75 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~ 75 (266)
+.-.|..|-..++ .|.+- .|||+|.+.|++
T Consensus 839 q~skCs~C~~~Ld----lP~VhF~CgHsyHqhC~e 869 (933)
T KOG2114|consen 839 QVSKCSACEGTLD----LPFVHFLCGHSYHQHCLE 869 (933)
T ss_pred eeeeecccCCccc----cceeeeecccHHHHHhhc
Confidence 3468999999999 99885 999999999998
No 87
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=85.19 E-value=0.36 Score=44.82 Aligned_cols=44 Identities=23% Similarity=0.442 Sum_probs=30.1
Q ss_pred cccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccccc
Q 036732 45 ECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFR 106 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 106 (266)
.|.-|-.-..+ --++++|.|.||.+|-..- .. ..||.|...+.|
T Consensus 92 fCd~Cd~PI~I---YGRmIPCkHvFCl~CAr~~---~d------------K~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 92 FCDRCDFPIAI---YGRMIPCKHVFCLECARSD---SD------------KICPLCDDRVQR 135 (389)
T ss_pred eecccCCccee---eecccccchhhhhhhhhcC---cc------------ccCcCcccHHHH
Confidence 46677654443 3358899999999998652 11 259999876654
No 88
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.99 E-value=0.58 Score=44.94 Aligned_cols=36 Identities=36% Similarity=0.726 Sum_probs=26.5
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHHh
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l 77 (266)
...+|.||.......+..-.+..|+|-||..|.+++
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ 180 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQH 180 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHH
Confidence 467899999444433333346689999999999986
No 89
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.95 E-value=0.28 Score=44.86 Aligned_cols=49 Identities=37% Similarity=0.706 Sum_probs=38.3
Q ss_pred cccccccccccc--cCCCCcEEec--------CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 43 SLECPICWESFN--MVENVPYVLW--------CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 43 ~l~CpICl~~f~--~~~~~P~~L~--------CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
...|.||...|. .....|.++. |||+.|..|+... ..... +.||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~-l~~~~-----------~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTI-LLQAG-----------IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHH-HHHhh-----------hcCCcccce
Confidence 356999999888 3677888998 9999999999986 32222 369999864
No 90
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.93 E-value=0.39 Score=43.12 Aligned_cols=47 Identities=30% Similarity=0.828 Sum_probs=32.6
Q ss_pred Ccccccccc-cccccCCCCcEE--e--c-CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCc--cccccc
Q 036732 42 ESLECPICW-ESFNMVENVPYV--L--W-CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCP--WCNLLS 104 (266)
Q Consensus 42 e~l~CpICl-~~f~~~~~~P~~--L--~-CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP--~CR~~~ 104 (266)
++..||||. +.|- +|-+ + | |-|..|.+|.... .... |. .|| -|.+.+
T Consensus 9 ~d~~CPvCksDrYL----nPdik~linPECyHrmCESCvdRI-Fs~G-----pA------qCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYL----NPDIKILINPECYHRMCESCVDRI-FSRG-----PA------QCPYKGCGKIL 63 (314)
T ss_pred hcccCCcccccccc----CCCeEEEECHHHHHHHHHHHHHHH-hcCC-----CC------CCCCccHHHHH
Confidence 567899998 4555 4432 2 5 9999999999986 4433 22 488 676543
No 91
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.76 E-value=1.4 Score=39.34 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=40.3
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
-.-.|.+|...+..+ +-+.|-|-|.|.+.|+.+. .+.-...+.|. ...||.|...+.
T Consensus 49 Y~pNC~LC~t~La~g--dt~RLvCyhlfHW~Clner-aA~lPanTAPa----GyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASG--DTTRLVCYHLFHWKCLNER-AANLPANTAPA----GYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccC--cceeehhhhhHHHHHhhHH-HhhCCCcCCCC----cccCCCCCCccC
Confidence 356799999887744 3457899999999999994 33334344333 357999997653
No 92
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=82.17 E-value=1 Score=30.51 Aligned_cols=47 Identities=28% Similarity=0.479 Sum_probs=22.3
Q ss_pred cccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccc
Q 036732 43 SLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNL 102 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~ 102 (266)
.|.||+....+. .|+.. .|.|.-|-+=..=+....... .+.||.|++
T Consensus 2 sL~CPls~~~i~----~P~Rg~~C~H~~CFDl~~fl~~~~~~~---------~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIR----IPVRGKNCKHLQCFDLESFLESNQRTP---------KWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-S----SEEEETT--SS--EEHHHHHHHHHHS------------B-TTT--
T ss_pred eeeCCCCCCEEE----eCccCCcCcccceECHHHHHHHhhccC---------CeECcCCcC
Confidence 478999999999 99887 799987754322111111111 257999974
No 93
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.69 E-value=1 Score=40.65 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=36.2
Q ss_pred ccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhc
Q 036732 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVV 82 (266)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~ 82 (266)
+..++.+---|.+|++.+. +|++.+=||.||+.||.++.....
T Consensus 36 grDsiK~FdcCsLtLqPc~----dPvit~~GylfdrEaILe~ilaqK 78 (303)
T KOG3039|consen 36 GRDSIKPFDCCSLTLQPCR----DPVITPDGYLFDREAILEYILAQK 78 (303)
T ss_pred cccccCCcceeeeeccccc----CCccCCCCeeeeHHHHHHHHHHHH
Confidence 4556677778999999999 999999999999999998744433
No 94
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=78.95 E-value=2 Score=47.53 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=40.8
Q ss_pred CCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceec
Q 036732 40 REESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYK 110 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~ 110 (266)
-+.+..|-||+..--.+. ..+.|.|+|.|...|.+.. ..++ ..+|.---+++.||.|+..+..++.+
T Consensus 3483 QD~DDmCmICFTE~L~AA-P~IqL~C~HiFHlqC~R~v-LE~R--W~GPRItF~FisCPiC~n~InH~~Lk 3549 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAA-PAIQLDCSHIFHLQCCRRV-LENR--WLGPRITFGFISCPICKNKINHIVLK 3549 (3738)
T ss_pred cccCceEEEEehhhhCCC-cceecCCccchhHHHHHHH-HHhc--ccCCeeEEeeeecccccchhhhHHHH
Confidence 345677888986433111 3355799999999998775 3322 11122123478999999776433333
No 95
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=78.19 E-value=2.1 Score=28.02 Aligned_cols=40 Identities=25% Similarity=0.535 Sum_probs=22.7
Q ss_pred ccccccccccCCCCcEEec---CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccc
Q 036732 46 CPICWESFNMVENVPYVLW---CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100 (266)
Q Consensus 46 CpICl~~f~~~~~~P~~L~---CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~C 100 (266)
|.+|.++.. ....-+ |+-.+...|+..+ |..++.+ .||.|
T Consensus 1 C~~C~~iv~----~G~~C~~~~C~~r~H~~C~~~y-~r~~~~~----------~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT----QGQRCSNRDCNVRLHDDCFKKY-FRHRSNP----------KCPNC 43 (43)
T ss_dssp -TTT-SB-S----SSEE-SS--S--EE-HHHHHHH-TTT-SS-----------B-TTT
T ss_pred CcccchhHe----eeccCCCCccCchHHHHHHHHH-HhcCCCC----------CCcCC
Confidence 678888877 665554 8888999999998 7666532 49987
No 96
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=75.02 E-value=0.73 Score=49.94 Aligned_cols=52 Identities=25% Similarity=0.601 Sum_probs=38.2
Q ss_pred ccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
....+-+...|+||.++.. +.-.+..|||.+|..|... |...+. .||.|+..
T Consensus 1146 y~~~~~~~~~c~ic~dil~---~~~~I~~cgh~~c~~c~~~--~l~~~s-----------~~~~~ksi 1197 (1394)
T KOG0298|consen 1146 YLMNLSGHFVCEICLDILR---NQGGIAGCGHEPCCRCDEL--WLYASS-----------RCPICKSI 1197 (1394)
T ss_pred HHHHhhcccchHHHHHHHH---hcCCeeeechhHhhhHHHH--HHHHhc-----------cCcchhhh
Confidence 3444556779999999887 2444569999999999998 544432 59999854
No 97
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=74.40 E-value=2.4 Score=33.23 Aligned_cols=49 Identities=24% Similarity=0.433 Sum_probs=31.8
Q ss_pred Cccccccccccccc-----------CCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 42 ESLECPICWESFNM-----------VENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~-----------~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
+...|.||.....+ ...+-++. -|.|.|.-.||.+ |...+. .||+|.+.
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisr--Wlktr~-----------vCPLdn~e 106 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISR--WLKTRN-----------VCPLDNKE 106 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHH--HHhhcC-----------cCCCcCcc
Confidence 34578887654321 11133343 5999999999999 654443 59999865
No 98
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=73.61 E-value=9.2 Score=29.76 Aligned_cols=32 Identities=31% Similarity=0.607 Sum_probs=22.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHhh
Q 036732 223 FLLIVVYAIPASAAILALYILVTILFALPSFL 254 (266)
Q Consensus 223 fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (266)
|.=+.|+.--+-+||-.||+|+.+||-+|-++
T Consensus 11 fFEwFLF~~AIFiAItIlYILLalL~EvPkYI 42 (117)
T PF07234_consen 11 FFEWFLFFGAIFIAITILYILLALLFEVPKYI 42 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33334444444567889999999999999753
No 99
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=73.06 E-value=2.2 Score=35.05 Aligned_cols=34 Identities=29% Similarity=0.761 Sum_probs=26.1
Q ss_pred cccccccccccccCCCCcEE-ecCC------ChhhHHHHHHhhhh
Q 036732 43 SLECPICWESFNMVENVPYV-LWCG------HTLCKNCILGLQWA 80 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~-L~Cg------HtFC~~CL~~l~~~ 80 (266)
..+|.||++.... ++.++ ++|| |-||..|+++ |.
T Consensus 26 ~~EC~IC~~~I~~--~~GvV~vt~~g~lnLEkmfc~~C~~r--w~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDN--NDGVVYVTDGGTLNLEKMFCADCDKR--WR 66 (134)
T ss_pred Ceeehhhhhhhhc--CCCEEEEecCCeehHHHHHHHHHHHH--HH
Confidence 6899999998883 23554 4776 5689999998 64
No 100
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.03 E-value=1.4 Score=38.68 Aligned_cols=37 Identities=35% Similarity=0.645 Sum_probs=27.2
Q ss_pred ccccccccccCCCCcEEecCCC-hhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 46 CPICWESFNMVENVPYVLWCGH-TLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 46 CpICl~~f~~~~~~P~~L~CgH-tFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
|-.|.+.-. .=..+||.| .+|..|-.+. -.||.|+..
T Consensus 161 Cr~C~~~~~----~VlllPCrHl~lC~~C~~~~-----------------~~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGEREA----TVLLLPCRHLCLCGICDESL-----------------RICPICRSP 198 (207)
T ss_pred ceecCcCCc----eEEeecccceEecccccccC-----------------ccCCCCcCh
Confidence 888888655 545569999 7899996532 159999965
No 101
>PHA02702 ORF033 IMV membrane protein; Provisional
Probab=70.05 E-value=3.8 Score=30.22 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhHhhhhhhcC
Q 036732 238 LALYILVTILFALPSFLILYFAY 260 (266)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
+...=+|..+.-+|.-+|||+||
T Consensus 46 ltvle~va~l~~IPgtIiLY~aY 68 (78)
T PHA02702 46 LTVLDFVSLLTTIPCTIILYFLC 68 (78)
T ss_pred HHHHHHHHHHHHhchHHHHHHHH
Confidence 34444567777899999999998
No 102
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=69.07 E-value=4 Score=38.85 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCChhhHHHHHHhhhhhccCCCCC-CCCCCcccCcccccccc
Q 036732 65 CGHTLCKNCILGLQWAVVKFPTLP-VQLPLFISCPWCNLLSF 105 (266)
Q Consensus 65 CgHtFC~~CL~~l~~~~~~~~~~~-~~~~~~~~CP~CR~~~~ 105 (266)
|.-..|..|+.++ ++.+.....| .=+.+..+||+||+.++
T Consensus 311 CRPmWC~~Cm~kw-FasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKW-FASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHH-hhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4445688999984 3333211111 11445678999998876
No 103
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.93 E-value=2.7 Score=44.03 Aligned_cols=36 Identities=22% Similarity=0.600 Sum_probs=29.1
Q ss_pred cCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHh
Q 036732 39 SREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGL 77 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l 77 (266)
.++.+-.|.+|...+.+ .|.++ +|||.|.+.|+.+.
T Consensus 813 v~ep~d~C~~C~~~ll~---~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLI---KPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred EecCccchHHhcchhhc---CcceeeeccchHHHHHHHHH
Confidence 45667899999986653 67766 99999999999874
No 104
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=66.72 E-value=5.3 Score=41.63 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=32.8
Q ss_pred CcccccccccccccCCCCcEEec---CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 42 ESLECPICWESFNMVENVPYVLW---CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~---CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
+..+|++|+..+....-.--+++ |+|.+|-.||.. |..+-..+ +....|++|..-
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s--~~DqL~~~-----~k~c~H~FC~~C 152 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKS--CNDQLEES-----EKHTAHYFCEEC 152 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHH--HHHHhhcc-----ccccccccHHHH
Confidence 56788888887772000011334 999999999998 54432211 112357777654
No 105
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=65.69 E-value=13 Score=27.22 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q 036732 220 VVIFLLIVVYAIPASAAILALYILV 244 (266)
Q Consensus 220 vi~fl~~~~~~~~~~~~~~~~~~~~ 244 (266)
-..|+++++|++|+|-++++..+.-
T Consensus 18 fLF~ilfIvlmipI~pll~~~~i~~ 42 (72)
T PF13198_consen 18 FLFFILFIVLMIPISPLLFVWIIGK 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888999998777655443
No 106
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.47 E-value=6 Score=34.13 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=35.1
Q ss_pred CcccccccccccccCCCCcEEe---cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVL---WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L---~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
+...|.||.-+--.+++.-.+. .||..|.+-|+.. |...-..+++.=...+-.||.|..++.
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~d--WLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTD--WLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHH--HHHHHhhccceeeeeeccCCCCCCcce
Confidence 3445777765444344333333 7999999999998 532211111111112346999998754
No 107
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.30 E-value=4.3 Score=39.59 Aligned_cols=33 Identities=36% Similarity=0.824 Sum_probs=27.4
Q ss_pred CCcccccccccccccCCCC-cEEecCCChhhHHHHHHh
Q 036732 41 EESLECPICWESFNMVENV-PYVLWCGHTLCKNCILGL 77 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~-P~~L~CgHtFC~~CL~~l 77 (266)
....+|.||.+.+. . -..+.|||-||..|..++
T Consensus 68 ~~~~~c~ic~~~~~----~~~~~~~c~H~~c~~cw~~y 101 (444)
T KOG1815|consen 68 KGDVQCGICVESYD----GEIIGLGCGHPFCPPCWTGY 101 (444)
T ss_pred CccccCCcccCCCc----chhhhcCCCcHHHHHHHHHH
Confidence 35689999999987 4 444599999999999986
No 108
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=64.30 E-value=4.9 Score=38.67 Aligned_cols=69 Identities=28% Similarity=0.592 Sum_probs=42.5
Q ss_pred cccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCC-----------CCCCCcccCcccccccccceecC
Q 036732 43 SLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLP-----------VQLPLFISCPWCNLLSFRVVYKG 111 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~-----------~~~~~~~~CP~CR~~~~~~~~~~ 111 (266)
..+||||+-.|-... -++.-|.-+.|..|+.++.-.....++.. +..+.+..||.|...-.+..+.+
T Consensus 74 ~~ecpicflyyps~~--n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~~ 151 (482)
T KOG2789|consen 74 KTECPICFLYYPSAK--NLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYIK 151 (482)
T ss_pred cccCceeeeeccccc--chhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeeec
Confidence 468999999887222 23457999999999987511111111100 11234578999998766666666
Q ss_pred CC
Q 036732 112 NL 113 (266)
Q Consensus 112 ~~ 113 (266)
+.
T Consensus 152 i~ 153 (482)
T KOG2789|consen 152 IV 153 (482)
T ss_pred cc
Confidence 44
No 109
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=63.43 E-value=8.3 Score=39.51 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=48.7
Q ss_pred ccccccCCCcccccccccccccCCCCcEE-ecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCC
Q 036732 34 VSSVVSREESLECPICWESFNMVENVPYV-LWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGN 112 (266)
Q Consensus 34 ~~~~~~lee~l~CpICl~~f~~~~~~P~~-L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~ 112 (266)
+.......-.|.||++..... -|.. ..|.|.-|.+-..-+ ....+. ..+.||+|.+...
T Consensus 297 ~i~tt~~~vSL~CPl~~~Rm~----~P~r~~~CkHlQcFD~~~~l-q~n~~~--------pTW~CPVC~~~~~------- 356 (636)
T KOG2169|consen 297 EIATTSLRVSLNCPLSKMRMS----LPARGHTCKHLQCFDALSYL-QMNEQK--------PTWRCPVCQKAAP------- 356 (636)
T ss_pred cceeccceeEecCCcccceee----cCCcccccccceecchhhhH-HhccCC--------CeeeCccCCcccc-------
Confidence 344566677899999998777 4433 356665444433322 122222 2468999997755
Q ss_pred CCCCcchHHHHHHHHHHhc
Q 036732 113 LKFPRKNYFLLWMVESMNG 131 (266)
Q Consensus 113 ~~~~~~N~~l~~~ve~~~~ 131 (266)
.+.+....++.+++.....
T Consensus 357 ~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 357 FEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred ccchhhhHHHHHHHhhccC
Confidence 4677788888888776554
No 110
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=63.17 E-value=2.9 Score=43.65 Aligned_cols=55 Identities=31% Similarity=0.500 Sum_probs=39.0
Q ss_pred CCcccccccccccccCCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 41 EESLECPICWESFNMVENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
.+.++|-||.+... .+.|+-- .|-|.|...||.+ |+.....+ -...+.||.|+..
T Consensus 189 ~~~yeCmIC~e~I~--~t~~~WSC~sCYhVFHl~CI~~--WArs~ek~----~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIK--RTAPVWSCKSCYHVFHLNCIKK--WARSSEKT----GQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeecc--ccCCceecchhhhhhhHHHHHH--HHHHhhhc----cCccccCCcccch
Confidence 45789999999876 3344332 6889999999999 76553222 2245899999943
No 111
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=58.57 E-value=6.4 Score=26.56 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=26.0
Q ss_pred ccccccccccccCCCCcEEecCCChhhHHHHHHh
Q 036732 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l 77 (266)
..|..|...|....+...--.||+.||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 4688898888765555555589999999998763
No 112
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=57.39 E-value=13 Score=31.52 Aligned_cols=50 Identities=24% Similarity=0.416 Sum_probs=32.2
Q ss_pred CCcccccccccccccCCCCcEEecCCC---hhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGH---TLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgH---tFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
..+..|-||.+... .+.. --.|.. ...++|+++ |...+.. ..|+.|+...
T Consensus 6 ~~~~~CRIC~~~~~-~~~~--PC~CkGs~k~VH~sCL~r--Wi~~s~~---------~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTN--YCNCKNENKIVHKECLEE--WINTSKN---------KSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCC-CccC--CcccCCCchHHHHHHHHH--HHhcCCC---------CcccccCCeE
Confidence 36779999988754 1111 124444 348999999 6555432 3699999764
No 113
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=55.43 E-value=7.2 Score=26.45 Aligned_cols=13 Identities=38% Similarity=1.081 Sum_probs=10.2
Q ss_pred Ccccccccccccc
Q 036732 42 ESLECPICWESFN 54 (266)
Q Consensus 42 e~l~CpICl~~f~ 54 (266)
+.+.||.|.+.++
T Consensus 1 ~~f~CP~C~~~~~ 13 (54)
T PF05605_consen 1 DSFTCPYCGKGFS 13 (54)
T ss_pred CCcCCCCCCCccC
Confidence 4678999999655
No 115
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=54.23 E-value=3.2 Score=30.29 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=21.9
Q ss_pred cccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccccc
Q 036732 43 SLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFR 106 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 106 (266)
++.||.|...+. ... ||..|..|-..+ .... .||-|..++.+
T Consensus 1 e~~CP~C~~~L~-------~~~-~~~~C~~C~~~~--~~~a------------~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELE-------WQG-GHYHCEACQKDY--KKEA------------FCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEE-------EET-TEEEETTT--EE--EEEE------------E-TTT-SB-EE
T ss_pred CCcCCCCCCccE-------EeC-CEEECccccccc--eecc------------cCCCcccHHHH
Confidence 367999998765 112 788899998774 2222 59999987653
No 116
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=54.22 E-value=22 Score=32.39 Aligned_cols=33 Identities=33% Similarity=0.730 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH--------------HHHHHHhhHh
Q 036732 221 VIFLLIVVYAIPASAAILALYIL--------------VTILFALPSF 253 (266)
Q Consensus 221 i~fl~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 253 (266)
.++++++++++|..+++.+++.+ .+.|||+|.+
T Consensus 170 ~~~i~~vm~~L~~~al~~ai~~~~~rr~~~~~~l~w~aA~LFAlp~l 216 (256)
T PF14494_consen 170 ALFICLVMWALATLALFVAIQVLRRRRKFEPPMLTWMAAMLFALPPL 216 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccchHHHHHHHHHhhhhH
Confidence 46777888999999988887765 4678888753
No 117
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=54.10 E-value=5.4 Score=26.94 Aligned_cols=43 Identities=28% Similarity=0.692 Sum_probs=22.3
Q ss_pred ccccccccccccCCCCcEEecC-CChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 44 LECPICWESFNMVENVPYVLWC-GHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L~C-gHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
+.|.-||-..+ . ...| .|-.|..|+..+ ....+ .||.|..+.+
T Consensus 3 ~nCKsCWf~~k----~--Li~C~dHYLCl~CLt~m-l~~s~------------~C~iC~~~LP 46 (50)
T PF03854_consen 3 YNCKSCWFANK----G--LIKCSDHYLCLNCLTLM-LSRSD------------RCPICGKPLP 46 (50)
T ss_dssp ----SS-S--S----S--EEE-SS-EEEHHHHHHT--SSSS------------EETTTTEE--
T ss_pred ccChhhhhcCC----C--eeeecchhHHHHHHHHH-hcccc------------CCCcccCcCc
Confidence 35667776444 2 4566 578899999986 43332 5999997654
No 118
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=53.95 E-value=8.4 Score=25.59 Aligned_cols=42 Identities=24% Similarity=0.532 Sum_probs=22.6
Q ss_pred ccccccccccCCCCcEEecCCC-----hhhHHHHHHhhhhhccCCCCCCCCCCcccCccc
Q 036732 46 CPICWESFNMVENVPYVLWCGH-----TLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100 (266)
Q Consensus 46 CpICl~~f~~~~~~P~~L~CgH-----tFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~C 100 (266)
|-||++.-... .|.+.||+- .....|+.+ |...+.. ..|+.|
T Consensus 1 CrIC~~~~~~~--~~li~pC~C~Gs~~~vH~~CL~~--W~~~~~~---------~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED--EPLISPCRCKGSMKYVHRSCLER--WIRESGN---------RKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS--S-EE-SSS-SSCCGSEECCHHHH--HHHHHT----------SB-TTT
T ss_pred CeEeCCcCCCC--CceecccccCCCcchhHHHHHHH--HHHhcCC---------CcCCCC
Confidence 66888765522 367778764 336789999 5443321 258877
No 119
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=47.61 E-value=32 Score=24.03 Aligned_cols=46 Identities=20% Similarity=0.404 Sum_probs=31.1
Q ss_pred ccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
-.|--|-..+..+..+.++-.=..|||..|.+.+ .. + .||.|.-.+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~-l~--~------------~CPNCgGel 51 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETM-LN--G------------VCPNCGGEL 51 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHH-hc--C------------cCcCCCCcc
Confidence 3566666666655556666665669999999885 21 1 499998654
No 120
>PHA03055 Hypothetical protein; Provisional
Probab=46.04 E-value=16 Score=27.16 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=15.9
Q ss_pred HHHHHHHHhhHhhhhhhcC
Q 036732 242 ILVTILFALPSFLILYFAY 260 (266)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~ 260 (266)
=++.++.-+|.-++||+||
T Consensus 53 E~va~lifIPgti~LY~aY 71 (79)
T PHA03055 53 KYIGLFIYIPGTIILYATY 71 (79)
T ss_pred HHHHHHHhhccHHHHHHHH
Confidence 3566777799999999998
No 121
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.75 E-value=11 Score=34.93 Aligned_cols=33 Identities=24% Similarity=0.597 Sum_probs=27.7
Q ss_pred CCcccccccccccccCCCCcEEecC----CChhhHHHHHHh
Q 036732 41 EESLECPICWESFNMVENVPYVLWC----GHTLCKNCILGL 77 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~C----gHtFC~~CL~~l 77 (266)
.+.|.|.+|.|.++ +--...| .|-||-.|-++.
T Consensus 266 ~apLcCTLC~ERLE----DTHFVQCPSVp~HKFCFPCSRes 302 (352)
T KOG3579|consen 266 SAPLCCTLCHERLE----DTHFVQCPSVPSHKFCFPCSRES 302 (352)
T ss_pred CCceeehhhhhhhc----cCceeecCCCcccceecccCHHH
Confidence 35699999999998 5557777 799999999886
No 122
>PLN02189 cellulose synthase
Probab=44.57 E-value=17 Score=39.28 Aligned_cols=53 Identities=25% Similarity=0.555 Sum_probs=35.3
Q ss_pred Cccccccccccccc-CCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccccc
Q 036732 42 ESLECPICWESFNM-VENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFR 106 (266)
Q Consensus 42 e~l~CpICl~~f~~-~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 106 (266)
....|.||.|.... ++-+|.+- -|+--.|+.|.+- ..+..++ .||.|+....|
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey-er~eg~q-----------~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY-ERREGTQ-----------NCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcCCc-----------cCcccCCchhh
Confidence 34589999997654 33345544 4888899999953 2333332 69999976553
No 123
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=42.78 E-value=6.3 Score=27.83 Aligned_cols=34 Identities=26% Similarity=0.627 Sum_probs=17.9
Q ss_pred CcccccccccccccCCCCcEEe-cCCChhhHHHHHH
Q 036732 42 ESLECPICWESFNMVENVPYVL-WCGHTLCKNCILG 76 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~ 76 (266)
+.-.|.+|...|... +....- .||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~-~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLF-RRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSS-S-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCc-eeeEccCCCCCEECCchhCC
Confidence 567899999999733 233333 7999999999875
No 124
>PLN02436 cellulose synthase A
Probab=42.41 E-value=19 Score=39.02 Aligned_cols=52 Identities=25% Similarity=0.601 Sum_probs=35.4
Q ss_pred ccccccccccccc-CCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccccc
Q 036732 43 SLECPICWESFNM-VENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFR 106 (266)
Q Consensus 43 ~l~CpICl~~f~~-~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 106 (266)
...|.||-|..-. ++-+|.+- -|+--.|+.|.+- ..+..++ .||.|+....|
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey-er~eg~~-----------~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY-ERREGNQ-----------ACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcCCc-----------cCcccCCchhh
Confidence 4599999997643 44456554 5888899999953 2333332 69999976553
No 125
>PHA03062 putative IMV membrane protein; Provisional
Probab=42.32 E-value=20 Score=26.60 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=15.8
Q ss_pred HHHHHHHHhhHhhhhhhcC
Q 036732 242 ILVTILFALPSFLILYFAY 260 (266)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~ 260 (266)
=++.++.-+|.-++||+||
T Consensus 54 E~va~lifIPgti~LY~aY 72 (78)
T PHA03062 54 EYVAILIFVPGTIALYSAY 72 (78)
T ss_pred HHHHHHHhhccHHHHHHHH
Confidence 3566777799999999998
No 126
>PF15616 TerY-C: TerY-C metal binding domain
Probab=42.30 E-value=13 Score=30.48 Aligned_cols=45 Identities=27% Similarity=0.662 Sum_probs=31.2
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.+.+.+...||-|-..+- - .+-.||+.+|.. + . ....||+|.+..
T Consensus 71 tseL~g~PgCP~CGn~~~----f-a~C~CGkl~Ci~---g-----~----------~~~~CPwCg~~g 115 (131)
T PF15616_consen 71 TSELIGAPGCPHCGNQYA----F-AVCGCGKLFCID---G-----E----------GEVTCPWCGNEG 115 (131)
T ss_pred hHHhcCCCCCCCCcChhc----E-EEecCCCEEEeC---C-----C----------CCEECCCCCCee
Confidence 445667799999998755 2 234899999862 1 1 124799999764
No 127
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=41.92 E-value=29 Score=37.64 Aligned_cols=52 Identities=27% Similarity=0.597 Sum_probs=35.6
Q ss_pred ccccccccccccc-CCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccccc
Q 036732 43 SLECPICWESFNM-VENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFR 106 (266)
Q Consensus 43 ~l~CpICl~~f~~-~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 106 (266)
...|.||-|.... ++-+|.+- .||--.|+.|.+ +..+..++ .||.|+....|
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q-----------~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQ-----------SCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCc-----------cCCccCCchhh
Confidence 4589999987554 44456554 688889999994 32333332 69999976554
No 128
>PLN02400 cellulose synthase
Probab=41.86 E-value=1.2e+02 Score=33.18 Aligned_cols=53 Identities=21% Similarity=0.459 Sum_probs=35.7
Q ss_pred Cccccccccccccc-CCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccccc
Q 036732 42 ESLECPICWESFNM-VENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFR 106 (266)
Q Consensus 42 e~l~CpICl~~f~~-~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 106 (266)
....|.||-|..-. ++-+|.+. .|+--.|+.|.+ +..+..++ .||.|+....|
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq-----------~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQ-----------CCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCc-----------cCcccCCcccc
Confidence 35599999997554 34456555 688889999994 32333322 69999976554
No 129
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=41.21 E-value=6.4 Score=36.14 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=25.3
Q ss_pred cccCCCCCchhhhccCcCCcccccccccCCCcccccccccccc
Q 036732 12 NVGLKNDSLKASEAASECSDDDVSSVVSREESLECPICWESFN 54 (266)
Q Consensus 12 ~~~~k~~~~~~~~~~~~~s~~~~~~~~~lee~l~CpICl~~f~ 54 (266)
+.+++..-.+|++...+..-.=-.-.....-++.|+||+..|-
T Consensus 242 D~~~R~~l~kpnh~~VDfRAtC~CH~~lv~iG~VCSVCLSVfC 284 (314)
T KOG2487|consen 242 DPELRAVLSKPNHNSVDFRATCYCHNRLVLIGFVCSVCLSVFC 284 (314)
T ss_pred CcchhhhccCCCCCCcCcceeeeeecceeeeeeehHHHHHHhh
Confidence 3344444455666665554332223345567889999998877
No 130
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=40.00 E-value=12 Score=21.81 Aligned_cols=8 Identities=38% Similarity=1.007 Sum_probs=3.9
Q ss_pred cccccccc
Q 036732 46 CPICWESF 53 (266)
Q Consensus 46 CpICl~~f 53 (266)
||-|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555443
No 131
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=37.69 E-value=17 Score=28.40 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=29.2
Q ss_pred CcccccccccccccCCCCcEE--------ecC---CChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 42 ESLECPICWESFNMVENVPYV--------LWC---GHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~--------L~C---gHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
.+.+|..|...-. +..+ ..| .-.||..||... ....-. .+.....+.||.||..
T Consensus 6 ~g~~CHqCrqKt~----~~~~~C~~~~~~~~C~~~~~~fC~~CL~~r-yge~~~---ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 6 NGKTCHQCRQKTL----DFKTICTGHWKNSSCRGCRGKFCGGCLRNR-YGENVE---EVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCCchhhcCCCC----CCceEcCCCCCCCCCccCcceehHhHHHHH-HhhhHH---HHhcCCceECCCCCCe
Confidence 4667777776433 2221 234 667999999764 211100 0011124679999864
No 132
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=36.32 E-value=53 Score=24.52 Aligned_cols=51 Identities=20% Similarity=0.436 Sum_probs=20.7
Q ss_pred Cccccccccccccc-CCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 42 ESLECPICWESFNM-VENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 42 e~l~CpICl~~f~~-~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
....|.||-+..-. ++-++.+. .|+--.|+.|.+=- .+...+ .||.|+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYE-rkeg~q-----------~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYE-RKEGNQ-----------VCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHH-HHTS-S-----------B-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHH-hhcCcc-----------cccccCCCc
Confidence 46689999986543 34455555 68989999998642 222222 699999543
No 133
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=35.90 E-value=19 Score=28.56 Aligned_cols=50 Identities=24% Similarity=0.447 Sum_probs=32.4
Q ss_pred CcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 42 ESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
..-.|.+|...|.-..+..... .|+|.+|..|-.. .... ....|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---~~~~---------~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---SKKE---------PIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---TSSS---------CCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---CCCC---------CCEEChhhHHH
Confidence 4568999998776555456555 7999999999653 1111 13569999854
No 134
>PHA02862 5L protein; Provisional
Probab=35.59 E-value=38 Score=28.33 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=29.3
Q ss_pred ccccccccccccCCCCcEEecCCC-----hhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 44 LECPICWESFNMVENVPYVLWCGH-----TLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L~CgH-----tFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
-.|=||.+.-+ +. .-||.. -..+.|+.+ |-+.... ..|+.|+...
T Consensus 3 diCWIC~~~~~----e~-~~PC~C~GS~K~VHq~CL~~--WIn~S~k---------~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCD----ER-NNFCGCNEEYKVVHIKCMQL--WINYSKK---------KECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCC----CC-cccccccCcchhHHHHHHHH--HHhcCCC---------cCccCCCCeE
Confidence 46889998754 22 245543 357899999 6544322 3799999764
No 135
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=34.81 E-value=42 Score=36.32 Aligned_cols=53 Identities=26% Similarity=0.651 Sum_probs=35.8
Q ss_pred Cccccccccccccc-CCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccccc
Q 036732 42 ESLECPICWESFNM-VENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFR 106 (266)
Q Consensus 42 e~l~CpICl~~f~~-~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 106 (266)
....|.||-|.... ++-+|.+- -|+--.|+.|.+ +..+..++ .||.|+....|
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~~g~~-----------~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERSEGNQ-----------CCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCc-----------cCCccCCchhh
Confidence 46789999987554 44456554 688889999994 32333332 69999976543
No 136
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.28 E-value=79 Score=23.32 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=30.5
Q ss_pred cccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 45 ECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
.|.-|-..+..+..+.++..=.||||..|.+.. .. + .||.|.-.+.
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~-l~--g------------~CPnCGGelv 52 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENR-LH--G------------LCPNCGGELV 52 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHh-hc--C------------cCCCCCchhh
Confidence 344455555555556666677889999999853 11 1 4999986644
No 137
>PLN02195 cellulose synthase A
Probab=34.27 E-value=35 Score=36.67 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=33.9
Q ss_pred Cccccccccccccc-CCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 42 ESLECPICWESFNM-VENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~-~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
....|.||-+.... ++-+|.+- .|+--.|+.|.+ +..+..++ .||.|+..
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg~q-----------~CpqCkt~ 57 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEGRK-----------VCLRCGGP 57 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcCCc-----------cCCccCCc
Confidence 34589999996654 33456554 688899999994 32332222 69999955
No 138
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.85 E-value=54 Score=23.20 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhHhhhhhhcC
Q 036732 240 LYILVTILFALPSFLILYFAY 260 (266)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~ 260 (266)
.+.+.|++|.+=.+.|+||+|
T Consensus 10 a~a~~t~~~~l~fiavi~~ay 30 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAY 30 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666776777788877
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=33.72 E-value=27 Score=32.87 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=33.6
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
-.-.||+|.+.....+..-.-.+||+..|..|+.+. .... -.||.||+..
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~-~~~~------------~~~~~~rk~~ 297 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTI-SDGD------------GRCPGCRKPY 297 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcc-cccC------------CCCCccCCcc
Confidence 346899999977533333223479999999998875 2222 2699999654
No 140
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.69 E-value=21 Score=33.25 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=22.0
Q ss_pred CCChhhHHHHHHhhhhhccCCCCCC--CCCCcccCcccccccc
Q 036732 65 CGHTLCKNCILGLQWAVVKFPTLPV--QLPLFISCPWCNLLSF 105 (266)
Q Consensus 65 CgHtFC~~CL~~l~~~~~~~~~~~~--~~~~~~~CP~CR~~~~ 105 (266)
|....|..|+.+ |-..+++.... =..+...||+||+.++
T Consensus 325 crp~wc~~cla~--~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQ--IFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHH--HHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 555678899988 42222221110 0122357999998765
No 141
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=33.55 E-value=28 Score=27.45 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=7.9
Q ss_pred Ccccccccccccc
Q 036732 42 ESLECPICWESFN 54 (266)
Q Consensus 42 e~l~CpICl~~f~ 54 (266)
...+||-|...|.
T Consensus 8 tKR~Cp~CG~kFY 20 (108)
T PF09538_consen 8 TKRTCPSCGAKFY 20 (108)
T ss_pred CcccCCCCcchhc
Confidence 3456666666665
No 142
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.14 E-value=29 Score=29.77 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhhHHH
Q 036732 220 VVIFLLIVVYAIPASA 235 (266)
Q Consensus 220 vi~fl~~~~~~~~~~~ 235 (266)
.+=+|..+|+.+|+.+
T Consensus 92 ~vDllGtifFLlPfc~ 107 (182)
T COG4665 92 WVDLLGTIFFLLPFCL 107 (182)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444555566543
No 143
>PF04713 Pox_I5: Poxvirus protein I5; InterPro: IPR006803 This entry represents the Poxvirus protein I5.
Probab=32.75 E-value=33 Score=25.47 Aligned_cols=18 Identities=50% Similarity=0.838 Sum_probs=15.0
Q ss_pred HHHHHHHhhHhhhhhhcC
Q 036732 243 LVTILFALPSFLILYFAY 260 (266)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~ 260 (266)
.+.++.-+|.-++||+||
T Consensus 54 ~vailifIPGTIiLY~aY 71 (77)
T PF04713_consen 54 YVAILIFIPGTIILYSAY 71 (77)
T ss_pred HHHHHhhcccHHHHHHHH
Confidence 466677789999999998
No 144
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=31.12 E-value=69 Score=23.05 Aligned_cols=17 Identities=35% Similarity=0.940 Sum_probs=14.2
Q ss_pred HHhhHhhhhhhcCCCCC
Q 036732 248 FALPSFLILYFAYPSLD 264 (266)
Q Consensus 248 ~~~~~~~~~~~~~~~~~ 264 (266)
-.+|.++++..|+||+.
T Consensus 67 TiiP~iiLl~l~~pSl~ 83 (84)
T PF02790_consen 67 TIIPAIILLFLAFPSLK 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhcc
Confidence 46899999999999863
No 145
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=29.68 E-value=58 Score=27.40 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=18.0
Q ss_pred ecccchHHHHHHHHHHHhhhHHHHHH
Q 036732 213 LTAKFPLVVIFLLIVVYAIPASAAIL 238 (266)
Q Consensus 213 ~t~~~~~vi~fl~~~~~~~~~~~~~~ 238 (266)
.|+.+-.+.+...+++|++|+..+++
T Consensus 96 aT~lf~~~clv~avvly~vP~r~l~l 121 (156)
T PF08372_consen 96 ATALFVVFCLVAAVVLYFVPFRVLVL 121 (156)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 35555556666778899999976643
No 146
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.30 E-value=47 Score=29.70 Aligned_cols=22 Identities=27% Similarity=0.307 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 036732 220 VVIFLLIVVYAIPASAAILALY 241 (266)
Q Consensus 220 vi~fl~~~~~~~~~~~~~~~~~ 241 (266)
++.|+.++++.+|+.++++++|
T Consensus 236 lv~~l~~l~p~~~~~~~~~~~~ 257 (262)
T PF14257_consen 236 LVVFLVGLLPWLPLILIIGLLV 257 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444444444
No 147
>PF05293 ASFV_L11L: African swine fever virus (ASFV) L11L protein; InterPro: IPR007957 L11L is an integral membrane protein of the African swine fever virus, which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic pigs [].
Probab=29.21 E-value=1.8e+02 Score=20.93 Aligned_cols=13 Identities=46% Similarity=0.909 Sum_probs=10.4
Q ss_pred ecccchHHHHHHH
Q 036732 213 LTAKFPLVVIFLL 225 (266)
Q Consensus 213 ~t~~~~~vi~fl~ 225 (266)
..|.+|+|.|||.
T Consensus 7 vmapiplilifly 19 (78)
T PF05293_consen 7 VMAPIPLILIFLY 19 (78)
T ss_pred eecCchhHHHHHH
Confidence 3688999999975
No 148
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.18 E-value=54 Score=29.92 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=35.3
Q ss_pred ccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
......+.|||=--.++..-+=-+...|||.|-..-+++. . . -.|++|.....
T Consensus 106 D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--k---a----------s~C~~C~a~y~ 158 (293)
T KOG3113|consen 106 DTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--K---A----------SVCHVCGAAYQ 158 (293)
T ss_pred ccccceeecccccceecceEEEEEEeccceeccHHHHHHh--h---h----------ccccccCCccc
Confidence 3345678999987777632222223389999999988874 1 1 15999997643
No 149
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.89 E-value=64 Score=18.58 Aligned_cols=11 Identities=45% Similarity=0.818 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 036732 236 AILALYILVTI 246 (266)
Q Consensus 236 ~~~~~~~~~~~ 246 (266)
+|++|++|..+
T Consensus 8 livVLFILLiI 18 (24)
T PF09680_consen 8 LIVVLFILLII 18 (24)
T ss_pred hHHHHHHHHHH
Confidence 44455554443
No 150
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.44 E-value=23 Score=28.93 Aligned_cols=40 Identities=33% Similarity=0.541 Sum_probs=26.1
Q ss_pred cccccccccccccCCCCcEEecCCC-----hhhHHHHHHhhhhhc
Q 036732 43 SLECPICWESFNMVENVPYVLWCGH-----TLCKNCILGLQWAVV 82 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgH-----tFC~~CL~~l~~~~~ 82 (266)
-..||+|.-....+...--++.=|| +||.+|-.++.|...
T Consensus 39 i~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwter 83 (160)
T COG4306 39 ITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTER 83 (160)
T ss_pred HhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHHH
Confidence 5689999876664433444566665 678888776666544
No 151
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.29 E-value=47 Score=32.67 Aligned_cols=36 Identities=31% Similarity=0.660 Sum_probs=29.0
Q ss_pred ccCCCccccccc-ccccccCCCCcEEe--cCCChhhHHHHHHh
Q 036732 38 VSREESLECPIC-WESFNMVENVPYVL--WCGHTLCKNCILGL 77 (266)
Q Consensus 38 ~~lee~l~CpIC-l~~f~~~~~~P~~L--~CgHtFC~~CL~~l 77 (266)
-...+++.|++| .+.|. .-+.+ -|.-++|..|+..-
T Consensus 214 ~~~~e~~~c~~~~~~~~~----~~~l~~~~~~~~~~~~~i~~~ 252 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVML----DAALLSKCCLKSFCDKCIRDA 252 (448)
T ss_pred ccCCccccCceecchhhH----HHHHhhhhhcccCCccccccc
Confidence 456789999999 77777 66666 58999999999773
No 152
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=26.03 E-value=1.4e+02 Score=23.90 Aligned_cols=62 Identities=23% Similarity=0.428 Sum_probs=35.2
Q ss_pred cccccccccceeeeeeeeecccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHhhhhhhcC
Q 036732 195 TVERIHSSLRKSLIFFVHLTAKFPLVVIFLLIVVYAIPASAAILALYILVTILFALPSFLILYFAY 260 (266)
Q Consensus 195 ~~~~~~~~~~k~~~~~v~~t~~~~~vi~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
..|+.....+|.. -....+.++.+++++++..|=-...+..+.+.|.+..|+-.|.+-|+-|
T Consensus 47 ~DErf~~n~~kAa----~~af~v~l~~~~ii~l~~~i~~~~~~~~~~i~i~~~i~l~vf~~~~~~y 108 (118)
T PF12676_consen 47 PDERFYENVRKAA----SRAFFVALILLFIILLISMIFDNLELITILIAIAFAIALLVFAISYLYY 108 (118)
T ss_pred CcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555542 2334445666666665555555555555556666777777777766654
No 153
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=25.85 E-value=40 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.644 Sum_probs=18.3
Q ss_pred ccccccccccccCCCCcEEecCCChh
Q 036732 44 LECPICWESFNMVENVPYVLWCGHTL 69 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L~CgHtF 69 (266)
+.||+|...+.... .....+.||+|
T Consensus 3 ~~CP~C~~~l~~~~-~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEE-NSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCC-CEEEcCCCCCC
Confidence 78999999886433 44555778887
No 154
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.60 E-value=1.3e+02 Score=31.43 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=34.4
Q ss_pred CCcccccccccccccCCCCcEEe-------cCCChh--------------------hHHHHHHhhhhhccCCCCCCCCCC
Q 036732 41 EESLECPICWESFNMVENVPYVL-------WCGHTL--------------------CKNCILGLQWAVVKFPTLPVQLPL 93 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L-------~CgHtF--------------------C~~CL~~l~~~~~~~~~~~~~~~~ 93 (266)
.+--+|+-|++.+.... +++.+ .||-.| |..|.+++ ....+.. =...
T Consensus 99 pD~a~C~~Cl~Ei~dp~-~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY-~dP~nRR----fHAQ 172 (750)
T COG0068 99 PDAATCEDCLEEIFDPN-SRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEY-KDPLNRR----FHAQ 172 (750)
T ss_pred CchhhhHHHHHHhcCCC-CcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHh-cCccccc----cccc
Confidence 35568999998776333 23332 577766 99999886 2211100 0112
Q ss_pred cccCccccccc
Q 036732 94 FISCPWCNLLS 104 (266)
Q Consensus 94 ~~~CP~CR~~~ 104 (266)
.+.||.|.=..
T Consensus 173 p~aCp~CGP~~ 183 (750)
T COG0068 173 PIACPKCGPHL 183 (750)
T ss_pred cccCcccCCCe
Confidence 35899998544
No 155
>PHA02655 hypothetical protein; Provisional
Probab=25.09 E-value=45 Score=24.51 Aligned_cols=23 Identities=26% Similarity=0.571 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 036732 222 IFLLIVVYAIPASAAILALYILV 244 (266)
Q Consensus 222 ~fl~~~~~~~~~~~~~~~~~~~~ 244 (266)
-|..+-.|.||+.+....+-|||
T Consensus 61 kfvvftiylipfvivmisciflv 83 (94)
T PHA02655 61 KFVVFTIYLIPFVIVMISCIFLV 83 (94)
T ss_pred hheeehhhHHHHHHHHHHHHHhh
Confidence 46666789999887776666654
No 156
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=25.07 E-value=1.4e+02 Score=23.94 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 036732 230 AIPASAAILALYILVTILF 248 (266)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~ 248 (266)
++..+..++++|++..++.
T Consensus 40 ~~~~~~~~ll~Y~i~w~~l 58 (121)
T TIGR02978 40 LFGGGFFVLVAYIALWLLL 58 (121)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 3344444555677666553
No 157
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=23.93 E-value=84 Score=28.03 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHH-hhhHHHHHHHHHHH
Q 036732 217 FPLVVIFLLIVVY-AIPASAAILALYIL 243 (266)
Q Consensus 217 ~~~vi~fl~~~~~-~~~~~~~~~~~~~~ 243 (266)
+-++++.+.+|+| +-|..+=..+.|+-
T Consensus 116 ~~~~~~v~a~~lFPlWP~~~r~gv~YlS 143 (224)
T PF03839_consen 116 ALLLVGVIAICLFPLWPRWMRQGVYYLS 143 (224)
T ss_pred HHHHHHHHHHHhhhcChHHHhheeehhH
Confidence 3345555566666 66665555555533
No 158
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=23.88 E-value=66 Score=21.50 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=7.1
Q ss_pred CCCcccCcccccc
Q 036732 91 LPLFISCPWCNLL 103 (266)
Q Consensus 91 ~~~~~~CP~CR~~ 103 (266)
++....||.|...
T Consensus 31 Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 31 LPDDWVCPVCGAP 43 (47)
T ss_dssp S-TT-B-TTTSSB
T ss_pred CCCCCcCcCCCCc
Confidence 4455789999853
No 159
>PF14353 CpXC: CpXC protein
Probab=23.77 E-value=73 Score=25.20 Aligned_cols=12 Identities=33% Similarity=0.994 Sum_probs=9.5
Q ss_pred cccccccccccc
Q 036732 43 SLECPICWESFN 54 (266)
Q Consensus 43 ~l~CpICl~~f~ 54 (266)
+++||-|...+.
T Consensus 1 ~itCP~C~~~~~ 12 (128)
T PF14353_consen 1 EITCPHCGHEFE 12 (128)
T ss_pred CcCCCCCCCeeE
Confidence 368998888877
No 160
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.61 E-value=48 Score=34.25 Aligned_cols=49 Identities=27% Similarity=0.539 Sum_probs=34.6
Q ss_pred cccccccccccCCCCcEEecCCC-hhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 45 ECPICWESFNMVENVPYVLWCGH-TLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L~CgH-tFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.|+||-..++ -+..-.||| ..|..|...++-...+.. --..||+||..+
T Consensus 2 ~c~ic~~s~~----~~~~~s~~h~~v~~~~~~R~~~~~~~~~-------~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPD----FVGRGSCGHNEVCATCVVRLRFELNNRK-------CSNECPVCRREV 51 (669)
T ss_pred CcceeecCcc----ccccccccccccchhhhhhhhhhccccc-------ccccCcccccce
Confidence 5999999888 666679999 999999988743322110 012589999754
No 161
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=23.40 E-value=1.8e+02 Score=23.18 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=5.6
Q ss_pred HHHhhhHHHHHH
Q 036732 227 VVYAIPASAAIL 238 (266)
Q Consensus 227 ~~~~~~~~~~~~ 238 (266)
.+|.+|.-++++
T Consensus 73 l~Y~lPll~li~ 84 (135)
T PF04246_consen 73 LVYLLPLLALIA 84 (135)
T ss_pred HHHHHHHHHHHH
Confidence 445555444443
No 162
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=23.23 E-value=1.3e+02 Score=18.98 Aligned_cols=9 Identities=44% Similarity=1.032 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 036732 240 LYILVTILF 248 (266)
Q Consensus 240 ~~~~~~~~~ 248 (266)
|+++|+-+|
T Consensus 13 Lfi~iPt~F 21 (35)
T PRK04989 13 LFVLVPTVF 21 (35)
T ss_pred HHHHHHHHH
Confidence 344444333
No 163
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.93 E-value=49 Score=31.82 Aligned_cols=40 Identities=23% Similarity=0.488 Sum_probs=25.5
Q ss_pred Cccccccccccccc-CCCCcEEecCCChhhHHHHHHhhhhhcc
Q 036732 42 ESLECPICWESFNM-VENVPYVLWCGHTLCKNCILGLQWAVVK 83 (266)
Q Consensus 42 e~l~CpICl~~f~~-~~~~P~~L~CgHtFC~~CL~~l~~~~~~ 83 (266)
.-..||.|.-.+.- .--.-++-.|||-||..|... |...+
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~--~~~~~ 345 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGD--WKTHN 345 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcc--hhhCC
Confidence 34567777654321 113455668999999999977 54443
No 164
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=22.66 E-value=1.2e+02 Score=27.70 Aligned_cols=56 Identities=25% Similarity=0.581 Sum_probs=38.3
Q ss_pred eeeecccchHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhhHhhhhhhcCCCCCC
Q 036732 210 FVHLTAKFPLVVIFLLIVVYAIPASAAILA-LYILVTILFALPSFLILYFAYPSLDW 265 (266)
Q Consensus 210 ~v~~t~~~~~vi~fl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (266)
+..-|-..-..+.+++.+.|+.--+.-.++ ...++-..+.+..++++-++.|..||
T Consensus 107 ~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~~ 163 (320)
T PF03845_consen 107 LLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLLSIPNIDW 163 (320)
T ss_pred hcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 345566666777888888888777766666 34444445566677778888888876
No 165
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.48 E-value=1.8e+02 Score=24.86 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 036732 219 LVVIFLLIVVYAIPASAAILALYILVTILFAL 250 (266)
Q Consensus 219 ~vi~fl~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (266)
+|++.|-+++|+|-.=.=.-+.||+.+.++-+
T Consensus 107 ~v~vllW~vL~~ia~~l~fGlvff~lSlf~~i 138 (181)
T KOG3249|consen 107 WVIVLLWFVLAPIAHRLDFGLVFFLLSLFSII 138 (181)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
No 166
>PRK10836 lysine transporter; Provisional
Probab=22.42 E-value=1e+02 Score=30.10 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhHhhhhhhcC
Q 036732 239 ALYILVTILFALPSFLILYFAY 260 (266)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
.++-++.++.++|.++++|+.|
T Consensus 446 ~~~~~~~~~~g~~~~~~~~~~~ 467 (489)
T PRK10836 446 DWGGVAATYIGIPLFLIIWFGY 467 (489)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999988
No 167
>PF06281 DUF1035: Protein of unknown function (DUF1035); InterPro: IPR009379 Sulfolobus virus-like particle SSV1 and its fusellovirus homologues can be found in many acidic (pH less than 4.0) hot springs (greater than 70 degrees C) around the world. SSV1 contains a 15.5-kb double-stranded DNA genome that encodes 34 proteins with greater than 50 amino acids []. A site-specific integrase and a DnaA-like protein have been previously identified by sequence homology, and three structural proteins have been isolated from purified virus and identified by N-terminal sequencing (VP1, VP2, and VP3).; GO: 0005198 structural molecule activity, 0016021 integral to membrane
Probab=21.59 E-value=60 Score=23.52 Aligned_cols=18 Identities=44% Similarity=0.733 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 036732 219 LVVIFLLIVVYAIPASAA 236 (266)
Q Consensus 219 ~vi~fl~~~~~~~~~~~~ 236 (266)
||-+|.++++-++|+-++
T Consensus 49 LVplFylLvlIiVPAvi~ 66 (73)
T PF06281_consen 49 LVPLFYLLVLIIVPAVIA 66 (73)
T ss_pred HHHHHHHHHHHHhhhhee
Confidence 788999999999998653
No 168
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.50 E-value=57 Score=26.61 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=10.5
Q ss_pred CcccccccccccccCCCCc
Q 036732 42 ESLECPICWESFNMVENVP 60 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P 60 (266)
....||-|...|..-.+.|
T Consensus 8 tKr~Cp~cg~kFYDLnk~p 26 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNRRP 26 (129)
T ss_pred ccccCCCcCccccccCCCC
Confidence 3456777776666333333
No 169
>PF15013 CCSMST1: CCSMST1 family
Probab=21.48 E-value=69 Score=23.81 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=10.1
Q ss_pred HhhhHHHHHHHHHHH
Q 036732 229 YAIPASAAILALYIL 243 (266)
Q Consensus 229 ~~~~~~~~~~~~~~~ 243 (266)
|+|=+|++++++||-
T Consensus 34 ~~is~sl~~fliyFC 48 (77)
T PF15013_consen 34 YPISLSLAAFLIYFC 48 (77)
T ss_pred ehhHHHHHHHHHHHh
Confidence 455667778888853
No 170
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=21.27 E-value=92 Score=18.30 Aligned_cols=10 Identities=40% Similarity=0.786 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 036732 236 AILALYILVT 245 (266)
Q Consensus 236 ~~~~~~~~~~ 245 (266)
++++||+|.-
T Consensus 10 livVLFILLI 19 (26)
T TIGR01732 10 LIVVLFILLV 19 (26)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 171
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=21.16 E-value=76 Score=25.55 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhHhhhhhh
Q 036732 240 LYILVTILFALPSFLILYF 258 (266)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~ 258 (266)
+|+.+++.+++-++.|+|-
T Consensus 40 ly~~~~va~L~vai~ii~~ 58 (120)
T COG4839 40 LYTTLAVAALVVAISIISV 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 172
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=21.15 E-value=84 Score=19.65 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=13.1
Q ss_pred hhHHHHHHhhhhhccCCCCCCCCCCcccCccccc
Q 036732 69 LCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNL 102 (266)
Q Consensus 69 FC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~ 102 (266)
+|..|++++ ....+. .-...+++|+.|.-
T Consensus 1 lC~~C~~Ey-~~p~~R----R~~~~~isC~~CGP 29 (35)
T PF07503_consen 1 LCDDCLKEY-FDPSNR----RFHYQFISCTNCGP 29 (35)
T ss_dssp --HHHHHHH-CSTTST----TTT-TT--BTTCC-
T ss_pred CCHHHHHHH-cCCCCC----cccCcCccCCCCCC
Confidence 488898886 322211 01223578999973
No 173
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.77 E-value=1.5e+02 Score=26.34 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 036732 237 ILALYILVTILFA 249 (266)
Q Consensus 237 ~~~~~~~~~~~~~ 249 (266)
|-.+-||-||++|
T Consensus 143 ICT~LfLSTVVLA 155 (227)
T PF05399_consen 143 ICTLLFLSTVVLA 155 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555555
No 174
>PHA03164 hypothetical protein; Provisional
Probab=20.70 E-value=44 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=11.4
Q ss_pred eeecccchHHHHHHHHHHHh
Q 036732 211 VHLTAKFPLVVIFLLIVVYA 230 (266)
Q Consensus 211 v~~t~~~~~vi~fl~~~~~~ 230 (266)
+-+|.-..-+|+||.+++|+
T Consensus 61 lvLtgLaIamILfiifvlyv 80 (88)
T PHA03164 61 LVLTGLAIAMILFIIFVLYV 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444566777767665
No 175
>KOG4767 consensus Cytochrome c oxidase, subunit II, and related proteins [Energy production and conversion]
Probab=20.47 E-value=1.4e+02 Score=26.33 Aligned_cols=16 Identities=44% Similarity=0.937 Sum_probs=12.8
Q ss_pred HHHHHHHhhHhhhhhh
Q 036732 243 LVTILFALPSFLILYF 258 (266)
Q Consensus 243 ~~~~~~~~~~~~~~~~ 258 (266)
+|-++-|+|||-+||.
T Consensus 74 iIll~ialPS~~LLY~ 89 (231)
T KOG4767|consen 74 IILLLIALPSLRLLYL 89 (231)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 4556779999999995
No 176
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.38 E-value=38 Score=27.51 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=16.7
Q ss_pred eeecccchHHHHHHHHHHHhhhHH
Q 036732 211 VHLTAKFPLVVIFLLIVVYAIPAS 234 (266)
Q Consensus 211 v~~t~~~~~vi~fl~~~~~~~~~~ 234 (266)
...+..+-+||+++||++..+|.-
T Consensus 5 ~~~i~~~D~vIiv~LiI~sf~~i~ 28 (132)
T COG5341 5 FKMIKPLDFVIIVMLIILSFLPIL 28 (132)
T ss_pred eeeecCccEEeehHHHHHHHHHHH
Confidence 344556667888888888777753
No 177
>PF08637 NCA2: ATP synthase regulation protein NCA2; InterPro: IPR013946 NCA2 (Nuclear Control of ATPase), is one of the two nuclear genes involved in the control of mitochondrial expression of subunits 6 and 8 of the Fo-F1 ATP synthase in Saccharomyces cerevisiae (Baker's yeast). Mutations in either NCA2 or NCA3 (IPR005556 from INTERPRO) dramatically lower the level of the co-transcript encoding subunits 6 and 8 [, ].
Probab=20.30 E-value=59 Score=30.05 Aligned_cols=18 Identities=44% Similarity=0.567 Sum_probs=12.2
Q ss_pred HHHHHHHhhHhhhhhhcC
Q 036732 243 LVTILFALPSFLILYFAY 260 (266)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~ 260 (266)
.+.++-+.|+|||+|+.|
T Consensus 163 ~F~iva~~Pa~li~~~~~ 180 (290)
T PF08637_consen 163 NFGIVAASPAFLISYGLY 180 (290)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 345666777777777765
No 178
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=54 Score=33.87 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=26.7
Q ss_pred cccccccccccccCCCCcEEecCCChhhHHHHHHh
Q 036732 43 SLECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l 77 (266)
.-+|-+|...-+.+.-.+.++.|+-.+|..|-..+
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~ 688 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDY 688 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhhhhhh
Confidence 45788888755544447778899999999998765
No 179
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=20.19 E-value=1.7e+02 Score=26.31 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHhhHhhhh
Q 036732 219 LVVIFLLIVVY-AIPASAAILALYILVTILFALPSFLIL 256 (266)
Q Consensus 219 ~vi~fl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (266)
++++.+.+|+| +=|...=..+.|+-++++..+-.|+++
T Consensus 126 ~~~~ila~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~l 164 (232)
T TIGR00869 126 VVSIILALVLFPLWPRFMRRGSWYLSLGALGIIGGFFAV 164 (232)
T ss_pred HHHHHHHHhhcccChHHHhHhHHHHHHHHHHHHHHHHHH
Done!