Query 036732
Match_columns 266
No_of_seqs 195 out of 1369
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.5 2.9E-14 9.8E-19 107.3 6.1 75 38-133 8-83 (92)
2 1t1h_A Gspef-atpub14, armadill 99.4 4.4E-14 1.5E-18 103.1 4.3 72 39-133 4-75 (78)
3 2kr4_A Ubiquitin conjugation f 99.4 5.5E-14 1.9E-18 105.2 4.9 74 36-133 7-80 (85)
4 1wgm_A Ubiquitin conjugation f 99.4 1.5E-13 5.2E-18 105.6 7.3 79 32-134 11-90 (98)
5 2kre_A Ubiquitin conjugation f 99.4 2.8E-13 9.4E-18 104.5 6.6 74 37-134 23-96 (100)
6 3fl2_A E3 ubiquitin-protein li 99.4 1.9E-13 6.5E-18 108.6 4.4 74 38-133 47-120 (124)
7 2y43_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 105.4 3.0 74 37-134 16-90 (99)
8 3lrq_A E3 ubiquitin-protein li 99.4 1E-13 3.5E-18 106.5 0.9 75 36-133 15-90 (100)
9 2csy_A Zinc finger protein 183 99.3 1.2E-12 4.1E-17 96.3 5.2 66 39-132 11-76 (81)
10 2ecw_A Tripartite motif-contai 99.3 2.3E-13 7.7E-18 100.1 1.2 58 37-105 13-70 (85)
11 2yu4_A E3 SUMO-protein ligase 99.3 3.4E-12 1.1E-16 97.1 6.9 78 40-135 4-85 (94)
12 3l11_A E3 ubiquitin-protein li 99.3 3.4E-13 1.2E-17 105.6 1.4 81 34-130 6-86 (115)
13 1z6u_A NP95-like ring finger p 99.3 1.5E-12 5E-17 107.4 5.0 73 39-133 74-146 (150)
14 2ysl_A Tripartite motif-contai 99.3 3E-12 1E-16 91.9 5.6 57 35-105 12-68 (73)
15 2ecv_A Tripartite motif-contai 99.3 2.4E-13 8.4E-18 99.9 -0.4 58 37-105 13-70 (85)
16 2egp_A Tripartite motif-contai 99.3 8.3E-14 2.8E-18 101.6 -3.0 58 38-105 7-64 (79)
17 2ysj_A Tripartite motif-contai 99.3 4.1E-12 1.4E-16 88.9 5.4 52 35-100 12-63 (63)
18 2ckl_A Polycomb group ring fin 99.3 2.1E-12 7.2E-17 100.1 4.1 75 37-131 9-84 (108)
19 2yur_A Retinoblastoma-binding 99.3 5.1E-12 1.7E-16 91.6 5.1 53 37-104 9-62 (74)
20 2ckl_B Ubiquitin ligase protei 99.2 3E-12 1E-16 106.4 3.9 75 37-133 48-123 (165)
21 2ct2_A Tripartite motif protei 99.2 2.6E-12 9.1E-17 95.3 3.2 59 37-105 9-67 (88)
22 2djb_A Polycomb group ring fin 99.2 6.6E-12 2.3E-16 90.3 5.0 52 37-105 9-61 (72)
23 4ayc_A E3 ubiquitin-protein li 99.2 3.1E-12 1E-16 103.6 3.5 49 39-104 49-97 (138)
24 2c2l_A CHIP, carboxy terminus 99.2 6.7E-12 2.3E-16 111.2 6.1 72 39-133 204-275 (281)
25 1jm7_B BARD1, BRCA1-associated 99.2 1.2E-12 4E-17 103.1 0.8 70 37-132 16-86 (117)
26 2ecy_A TNF receptor-associated 99.2 7.4E-12 2.5E-16 88.5 3.6 53 37-105 9-61 (66)
27 3hct_A TNF receptor-associated 99.2 1.4E-11 4.8E-16 97.1 4.7 71 37-130 12-82 (118)
28 1jm7_A BRCA1, breast cancer ty 99.2 2.3E-12 7.9E-17 99.9 0.1 53 39-105 17-69 (112)
29 2d8t_A Dactylidin, ring finger 99.2 1.5E-11 5.2E-16 88.2 4.2 50 39-105 11-60 (71)
30 2f42_A STIP1 homology and U-bo 99.2 1.9E-11 6.3E-16 103.7 5.2 73 38-133 101-173 (179)
31 3htk_C E3 SUMO-protein ligase 99.1 3E-11 1E-15 107.7 5.4 77 33-131 171-250 (267)
32 3ng2_A RNF4, snurf, ring finge 99.1 1.4E-11 4.8E-16 87.8 2.6 50 39-105 6-62 (71)
33 2ecj_A Tripartite motif-contai 99.1 2.8E-11 9.7E-16 82.8 3.7 37 37-77 9-45 (58)
34 2ea6_A Ring finger protein 4; 99.1 2.4E-11 8.4E-16 85.8 3.2 55 37-104 9-66 (69)
35 1g25_A CDK-activating kinase a 99.1 3.8E-11 1.3E-15 84.5 3.7 48 42-105 2-54 (65)
36 1rmd_A RAG1; V(D)J recombinati 99.1 3.7E-11 1.3E-15 94.1 3.7 52 38-105 18-69 (116)
37 1e4u_A Transcriptional repress 99.0 6.9E-11 2.4E-15 87.0 3.0 54 38-105 6-61 (78)
38 1bor_A Transcription factor PM 99.0 2.3E-11 7.8E-16 83.7 0.0 45 41-105 4-48 (56)
39 2ect_A Ring finger protein 126 99.0 1.4E-10 4.8E-15 84.3 4.0 53 39-105 11-63 (78)
40 3knv_A TNF receptor-associated 99.0 1.4E-10 4.6E-15 94.6 4.2 52 37-104 25-76 (141)
41 3hcs_A TNF receptor-associated 99.0 1.6E-10 5.4E-15 96.4 4.3 71 37-130 12-82 (170)
42 2xeu_A Ring finger protein 4; 99.0 8E-11 2.7E-15 81.9 1.8 51 42-105 2-55 (64)
43 2kiz_A E3 ubiquitin-protein li 99.0 3E-10 1E-14 80.6 4.8 53 39-105 10-62 (69)
44 2ecm_A Ring finger and CHY zin 99.0 1.8E-10 6.2E-15 78.0 3.4 50 42-104 4-53 (55)
45 1iym_A EL5; ring-H2 finger, ub 99.0 1.9E-10 6.3E-15 78.0 3.4 51 40-104 2-53 (55)
46 2ecn_A Ring finger protein 141 99.0 1.3E-10 4.3E-15 82.8 2.3 50 38-105 10-59 (70)
47 2ep4_A Ring finger protein 24; 98.9 3.7E-10 1.3E-14 81.2 3.0 55 37-105 9-63 (74)
48 1chc_A Equine herpes virus-1 r 98.9 3.2E-10 1.1E-14 80.2 2.5 48 41-105 3-51 (68)
49 4ic3_A E3 ubiquitin-protein li 98.9 1.4E-10 4.6E-15 84.2 0.3 48 37-105 18-66 (74)
50 1x4j_A Ring finger protein 38; 98.9 5E-10 1.7E-14 80.9 3.2 51 40-104 20-70 (75)
51 2l0b_A E3 ubiquitin-protein li 98.9 5.7E-10 2E-14 83.9 3.6 52 39-104 36-87 (91)
52 2ecg_A Baculoviral IAP repeat- 98.9 1.1E-10 3.9E-15 84.7 -0.4 49 36-105 18-67 (75)
53 4ap4_A E3 ubiquitin ligase RNF 98.8 1E-09 3.5E-14 86.7 2.7 48 41-105 5-59 (133)
54 1v87_A Deltex protein 2; ring- 98.7 4.9E-09 1.7E-13 81.5 3.1 56 42-105 24-93 (114)
55 2ea5_A Cell growth regulator w 98.7 1.2E-08 4.1E-13 72.9 3.4 45 40-105 12-57 (68)
56 2ecl_A Ring-box protein 2; RNF 98.7 1.3E-08 4.6E-13 74.8 3.7 51 42-105 14-75 (81)
57 2vje_A E3 ubiquitin-protein li 98.7 7.6E-09 2.6E-13 72.9 2.2 48 41-105 6-56 (64)
58 2yho_A E3 ubiquitin-protein li 98.6 3.7E-09 1.3E-13 77.7 -0.2 47 38-105 13-60 (79)
59 2vje_B MDM4 protein; proto-onc 98.6 1.2E-08 4.3E-13 71.6 2.4 47 42-105 6-55 (63)
60 2y1n_A E3 ubiquitin-protein li 98.6 2E-08 6.8E-13 94.3 4.3 49 41-105 330-378 (389)
61 4ap4_A E3 ubiquitin ligase RNF 98.6 1E-08 3.6E-13 80.8 2.0 55 38-105 67-124 (133)
62 1wim_A KIAA0161 protein; ring 98.6 5.5E-09 1.9E-13 78.8 0.3 52 42-103 4-61 (94)
63 3t6p_A Baculoviral IAP repeat- 98.5 1.7E-08 5.8E-13 93.6 0.4 48 37-105 289-337 (345)
64 3dpl_R Ring-box protein 1; ubi 98.4 1.2E-07 4.2E-12 73.5 3.7 50 42-104 36-99 (106)
65 2bay_A PRE-mRNA splicing facto 98.2 5.4E-07 1.8E-11 63.0 2.3 46 43-105 3-49 (61)
66 2d8s_A Cellular modulator of i 98.1 2E-06 6.9E-11 63.3 4.4 52 41-105 13-69 (80)
67 4a0k_B E3 ubiquitin-protein li 98.1 5.2E-07 1.8E-11 71.2 0.2 49 42-103 47-109 (117)
68 3vk6_A E3 ubiquitin-protein li 97.4 8.6E-05 2.9E-09 56.6 3.1 47 45-106 3-49 (101)
69 2ct0_A Non-SMC element 1 homol 97.4 0.00011 3.8E-09 53.2 3.4 50 41-104 13-62 (74)
70 3k1l_B Fancl; UBC, ring, RWD, 97.0 0.00022 7.6E-09 65.8 2.3 63 41-105 306-372 (381)
71 1vyx_A ORF K3, K3RING; zinc-bi 96.9 0.00051 1.8E-08 47.5 2.6 49 41-104 4-57 (60)
72 2jun_A Midline-1; B-BOX, TRIM, 96.3 0.00091 3.1E-08 50.3 1.1 32 42-77 2-36 (101)
73 3nw0_A Non-structural maintena 93.3 0.06 2E-06 47.0 3.9 48 42-104 179-227 (238)
74 3m62_A Ubiquitin conjugation f 93.1 0.048 1.6E-06 56.3 3.3 73 38-134 886-959 (968)
75 2ko5_A Ring finger protein Z; 89.2 0.44 1.5E-05 35.7 4.3 50 38-105 23-72 (99)
76 3i2d_A E3 SUMO-protein ligase 81.9 0.61 2.1E-05 43.2 2.3 72 38-129 244-316 (371)
77 4fo9_A E3 SUMO-protein ligase 75.9 1.4 4.8E-05 40.6 2.7 72 38-129 210-282 (360)
78 2cs3_A Protein C14ORF4, MY039 71.1 3.2 0.00011 30.2 3.0 35 41-79 13-51 (93)
79 3mjh_B Early endosome antigen 61.8 1.9 6.6E-05 26.1 0.3 13 42-54 4-16 (34)
80 1vfy_A Phosphatidylinositol-3- 59.0 4.3 0.00015 28.4 1.8 35 42-76 10-44 (73)
81 1z2q_A LM5-1; membrane protein 58.6 6.3 0.00021 28.3 2.7 35 42-76 20-54 (84)
82 1weo_A Cellulose synthase, cat 57.8 10 0.00034 28.0 3.6 51 42-104 15-68 (93)
83 3zyq_A Hepatocyte growth facto 56.6 4.2 0.00014 34.7 1.7 40 37-76 158-197 (226)
84 3t7l_A Zinc finger FYVE domain 52.6 5.1 0.00018 29.2 1.4 35 42-76 19-53 (90)
85 2yw8_A RUN and FYVE domain-con 51.8 5.7 0.00019 28.4 1.4 35 42-76 18-52 (82)
86 1dvp_A HRS, hepatocyte growth 51.4 6.3 0.00022 33.3 1.9 40 37-76 155-194 (220)
87 1wfk_A Zinc finger, FYVE domai 50.8 5.3 0.00018 29.1 1.2 36 41-76 7-42 (88)
88 1joc_A EEA1, early endosomal a 50.0 5.8 0.0002 30.8 1.4 35 42-76 68-102 (125)
89 1x4u_A Zinc finger, FYVE domai 46.0 7.5 0.00026 27.8 1.3 35 42-76 13-47 (84)
90 2zet_C Melanophilin; complex, 41.9 13 0.00043 30.0 2.2 50 42-103 67-117 (153)
91 2lbm_A Transcriptional regulat 41.2 36 0.0012 27.0 4.8 30 42-77 62-93 (142)
92 1y02_A CARP2, FYVE-ring finger 38.7 8.4 0.00029 29.8 0.6 35 42-76 18-52 (120)
93 1zbd_B Rabphilin-3A; G protein 37.0 14 0.00047 29.1 1.7 54 41-103 53-107 (134)
94 3mpx_A FYVE, rhogef and PH dom 36.9 7.2 0.00025 35.8 0.0 35 42-76 374-408 (434)
95 2l43_A N-teminal domain from h 32.4 30 0.001 25.0 2.7 53 39-103 21-75 (88)
96 1f62_A Transcription factor WS 31.2 17 0.00059 23.1 1.1 46 45-102 2-49 (51)
97 2lv9_A Histone-lysine N-methyl 30.6 20 0.00069 26.3 1.6 46 42-102 27-75 (98)
98 2ct7_A Ring finger protein 31; 30.2 15 0.00052 26.2 0.8 32 45-76 27-60 (86)
99 2gsm_B Cytochrome C oxidase su 29.7 43 0.0015 29.1 3.8 14 245-258 87-100 (262)
100 2l5u_A Chromodomain-helicase-D 28.7 42 0.0014 22.3 2.8 47 41-102 9-57 (61)
101 2e6r_A Jumonji/ARID domain-con 27.9 6.5 0.00022 28.8 -1.6 52 39-102 12-65 (92)
102 2lri_C Autoimmune regulator; Z 25.9 37 0.0013 23.1 2.2 47 42-103 11-59 (66)
103 2ku3_A Bromodomain-containing 25.9 43 0.0015 23.1 2.5 52 40-103 13-66 (71)
104 2k16_A Transcription initiatio 24.6 39 0.0013 23.1 2.1 50 42-103 17-68 (75)
105 2jne_A Hypothetical protein YF 23.9 10 0.00035 28.4 -1.1 41 44-106 33-73 (101)
106 2jxf_A NS4B(40-69), genome pol 23.9 8.7 0.0003 22.2 -1.2 7 1-7 15-21 (30)
107 3ql9_A Transcriptional regulat 23.6 2.4E+02 0.0082 21.8 6.7 30 42-77 56-87 (129)
108 6rxn_A Rubredoxin; electron tr 23.5 39 0.0013 21.5 1.8 13 43-55 4-16 (46)
109 1wil_A KIAA1045 protein; ring 21.4 55 0.0019 23.8 2.4 60 42-103 14-76 (89)
110 4rxn_A Rubredoxin; electron tr 21.2 77 0.0026 20.8 2.9 13 43-55 3-15 (54)
111 1z60_A TFIIH basal transcripti 20.6 66 0.0023 21.6 2.5 29 44-76 16-47 (59)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.49 E-value=2.9e-14 Score=107.35 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=61.1
Q ss_pred ccCCCcccccccccccccCCCCcEEec-CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCC
Q 036732 38 VSREESLECPICWESFNMVENVPYVLW-CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFP 116 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~-CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 116 (266)
..+++.++|+||++.+. +|++++ |||+||..||..+ |...+. ..||.||..+.. ...+
T Consensus 8 ~~~~~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~-~~~~~~----------~~CP~Cr~~~~~------~~~~ 66 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMT----DAVVIPCCGNSYCDECIRTA-LLESDE----------HTCPTCHQNDVS------PDAL 66 (92)
T ss_dssp CCCCTTTEETTTTEECS----SCEECTTTCCEECHHHHHHH-HHHCTT----------CCCTTTCCSSCC------TTSC
T ss_pred ccCCcCCCCCCCChhhc----CceECCCCCCHHHHHHHHHH-HHhcCC----------CcCcCCCCcCCC------cccc
Confidence 45678999999999999 999999 9999999999996 543321 269999977421 3578
Q ss_pred cchHHHHHHHHHHhccc
Q 036732 117 RKNYFLLWMVESMNGDR 133 (266)
Q Consensus 117 ~~N~~l~~~ve~~~~~~ 133 (266)
..|..+.++++.++...
T Consensus 67 ~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 67 IANKFLRQAVNNFKNET 83 (92)
T ss_dssp EECHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 89999999999988754
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.45 E-value=4.4e-14 Score=103.12 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=58.9
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCcc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPRK 118 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~ 118 (266)
.+.+.+.|+||++.+. +|++++|||+||+.||.++ +...+ ..||.||..+. ..++..
T Consensus 4 ~~~~~~~C~IC~~~~~----~Pv~~~CgH~fc~~Ci~~~-~~~~~-----------~~CP~C~~~~~-------~~~l~~ 60 (78)
T 1t1h_A 4 EFPEYFRCPISLELMK----DPVIVSTGQTYERSSIQKW-LDAGH-----------KTCPKSQETLL-------HAGLTP 60 (78)
T ss_dssp CCSSSSSCTTTSCCCS----SEEEETTTEEEEHHHHHHH-HTTTC-----------CBCTTTCCBCS-------SCCCEE
T ss_pred CCcccCCCCCcccccc----CCEEcCCCCeecHHHHHHH-HHHCc-----------CCCCCCcCCCC-------hhhCcc
Confidence 3567999999999999 9999999999999999995 33212 26999998764 367888
Q ss_pred hHHHHHHHHHHhccc
Q 036732 119 NYFLLWMVESMNGDR 133 (266)
Q Consensus 119 N~~l~~~ve~~~~~~ 133 (266)
|..+.++++.+....
T Consensus 61 n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 61 NYVLKSLIALWCESN 75 (78)
T ss_dssp CTTTHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999887643
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.45 E-value=5.5e-14 Score=105.20 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=62.1
Q ss_pred ccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCC
Q 036732 36 SVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKF 115 (266)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 115 (266)
....+.+.+.||||++++. +|++++|||+||+.||..+ |.... .||.||..+. ..+
T Consensus 7 ~~~~~p~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~-l~~~~------------~cP~~~~~l~-------~~~ 62 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMT----DPVRLPSGTVMDRSIILRH-LLNSP------------TDPFNRQMLT-------ESM 62 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCS----SEEECTTSCEEEHHHHHHH-HHHCS------------BCTTTCCBCC-------GGG
T ss_pred hhhcCchheECcccCchhc----CCeECCCCCEECHHHHHHH-HhcCC------------CCCCCcCCCC-------hHh
Confidence 3445678999999999999 9999999999999999997 65432 6999998765 368
Q ss_pred CcchHHHHHHHHHHhccc
Q 036732 116 PRKNYFLLWMVESMNGDR 133 (266)
Q Consensus 116 ~~~N~~l~~~ve~~~~~~ 133 (266)
+.+|..+.++++.+....
T Consensus 63 l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 63 LEPVPELKEQIQAWMREK 80 (85)
T ss_dssp CEECHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 899999999999887644
No 4
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.44 E-value=1.5e-13 Score=105.61 Aligned_cols=79 Identities=15% Similarity=0.045 Sum_probs=64.5
Q ss_pred ccccccccCCCcccccccccccccCCCCcEEecCC-ChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceec
Q 036732 32 DDVSSVVSREESLECPICWESFNMVENVPYVLWCG-HTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYK 110 (266)
Q Consensus 32 ~~~~~~~~lee~l~CpICl~~f~~~~~~P~~L~Cg-HtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~ 110 (266)
++......+.+.+.||||+++|. +|++++|| |+||+.||..+ |.... .||.||..+.
T Consensus 11 ~~~~~~~~~p~~~~CpI~~~~m~----dPV~~~cG~htf~r~cI~~~-l~~~~------------~cP~~~~~l~----- 68 (98)
T 1wgm_A 11 QEEETYADACDEFLDPIMSTLMC----DPVVLPSSRVTVDRSTIARH-LLSDQ------------TDPFNRSPLT----- 68 (98)
T ss_dssp SCCCCCCSCCTTTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHH-TTTSC------------BCTTTCSBCC-----
T ss_pred cchhhhhcCcHhcCCcCcccccc----CCeECCCCCeEECHHHHHHH-HHhCC------------CCCCCCCCCC-----
Confidence 33344456678999999999999 99999999 99999999996 55321 6999998765
Q ss_pred CCCCCCcchHHHHHHHHHHhcccC
Q 036732 111 GNLKFPRKNYFLLWMVESMNGDRV 134 (266)
Q Consensus 111 ~~~~~~~~N~~l~~~ve~~~~~~~ 134 (266)
..++.+|..+.++++.+.....
T Consensus 69 --~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 69 --MDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp --TTTSEECHHHHHHHHHHHHHST
T ss_pred --hhhceEcHHHHHHHHHHHHHcc
Confidence 3688999999999999876543
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.41 E-value=2.8e-13 Score=104.52 Aligned_cols=74 Identities=11% Similarity=0.001 Sum_probs=62.3
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCC
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFP 116 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 116 (266)
...+.+.+.||||+++|. +|++++|||+||+.||..+ |... ..||.||..+. ..++
T Consensus 23 ~~~~p~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~-l~~~------------~~cP~~~~~l~-------~~~L 78 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMT----DPVRLPSGTIMDRSIILRH-LLNS------------PTDPFNRQTLT-------ESML 78 (100)
T ss_dssp CSSCSTTTBCTTTCSBCS----SEEEETTTEEEEHHHHHHH-TTSC------------SBCSSSCCBCC-------TTSS
T ss_pred hccCcHhhCCcCccCccc----CCeECCCCCEEchHHHHHH-HHcC------------CCCCCCCCCCC-------hhhc
Confidence 345578999999999999 9999999999999999996 5532 16999998765 3689
Q ss_pred cchHHHHHHHHHHhcccC
Q 036732 117 RKNYFLLWMVESMNGDRV 134 (266)
Q Consensus 117 ~~N~~l~~~ve~~~~~~~ 134 (266)
.+|..+.++++.+.....
T Consensus 79 ~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 79 EPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp EECHHHHHHHHHHHHTTT
T ss_pred eECHHHHHHHHHHHHHhh
Confidence 999999999999887554
No 6
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=108.59 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=59.6
Q ss_pred ccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPR 117 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~ 117 (266)
..+++.++|+||++.+. +|++++|||+||..||..+ +.... ..||.||..+.. ...+.
T Consensus 47 ~~~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~-~~~~~-----------~~CP~Cr~~~~~------~~~~~ 104 (124)
T 3fl2_A 47 SKVEETFQCICCQELVF----RPITTVCQHNVCKDCLDRS-FRAQV-----------FSCPACRYDLGR------SYAMQ 104 (124)
T ss_dssp HHHHHHTBCTTTSSBCS----SEEECTTSCEEEHHHHHHH-HHTTC-----------CBCTTTCCBCCT------TCCCC
T ss_pred HhCccCCCCCcCChHHc----CcEEeeCCCcccHHHHHHH-HhHCc-----------CCCCCCCccCCC------CCCCC
Confidence 44567899999999999 9999999999999999995 44222 269999987541 25788
Q ss_pred chHHHHHHHHHHhccc
Q 036732 118 KNYFLLWMVESMNGDR 133 (266)
Q Consensus 118 ~N~~l~~~ve~~~~~~ 133 (266)
.|..+.++++.+....
T Consensus 105 ~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 105 VNQPLQTVLNQLFPGY 120 (124)
T ss_dssp CCHHHHHHHHHHSTTT
T ss_pred CCHHHHHHHHHHcccc
Confidence 9999999999876544
No 7
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.2e-13 Score=105.43 Aligned_cols=74 Identities=30% Similarity=0.555 Sum_probs=60.4
Q ss_pred cccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCC
Q 036732 37 VVSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKF 115 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 115 (266)
...+++.++|+||++.+. +|+++ +|||+||..|+.++ ...+ ..||.||..+. ..+
T Consensus 16 ~~~~~~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~--~~~~-----------~~CP~Cr~~~~-------~~~ 71 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFN----IAMIIPQCSHNYCSLCIRKF--LSYK-----------TQCPTCCVTVT-------EPD 71 (99)
T ss_dssp GHHHHHHTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHH--HTTC-----------CBCTTTCCBCC-------GGG
T ss_pred HHhCCCCCCcccCChhhC----CcCEECCCCCHhhHHHHHHH--HHCC-----------CCCCCCCCcCC-------hhh
Confidence 344567899999999999 99998 89999999999994 3332 16999998765 256
Q ss_pred CcchHHHHHHHHHHhcccC
Q 036732 116 PRKNYFLLWMVESMNGDRV 134 (266)
Q Consensus 116 ~~~N~~l~~~ve~~~~~~~ 134 (266)
+..|..+.++++.++..+.
T Consensus 72 l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 72 LKNNRILDELVKSLNFARN 90 (99)
T ss_dssp CEECHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 8899999999999887553
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.35 E-value=1e-13 Score=106.45 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=59.5
Q ss_pred ccccCCCcccccccccccccCCCCcEE-ecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCC
Q 036732 36 SVVSREESLECPICWESFNMVENVPYV-LWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLK 114 (266)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~-L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~ 114 (266)
....+++.++|+||++.+. +|++ ++|||+||..||.++ +...+ ..||.||..+. ..
T Consensus 15 ~~~~l~~~~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~-~~~~~-----------~~CP~Cr~~~~-------~~ 71 (100)
T 3lrq_A 15 SVESIAEVFRCFICMEKLR----DARLCPHCSKLCCFSCIRRW-LTEQR-----------AQCPHCRAPLQ-------LR 71 (100)
T ss_dssp HHHHHHHHTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHH-HHHTC-----------SBCTTTCCBCC-------GG
T ss_pred ccccCCCCCCCccCCcccc----CccccCCCCChhhHHHHHHH-HHHCc-----------CCCCCCCCcCC-------HH
Confidence 3456678999999999999 9999 899999999999995 44432 15999998764 36
Q ss_pred CCcchHHHHHHHHHHhccc
Q 036732 115 FPRKNYFLLWMVESMNGDR 133 (266)
Q Consensus 115 ~~~~N~~l~~~ve~~~~~~ 133 (266)
++..+..+.++++.+...+
T Consensus 72 ~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 72 ELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp GCEECTTHHHHHHHHHHHC
T ss_pred HhHhhHHHHHHHHHHHHHH
Confidence 6777888888877776554
No 9
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=96.29 Aligned_cols=66 Identities=21% Similarity=0.461 Sum_probs=49.1
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCcc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPRK 118 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~ 118 (266)
..++.+.|+||++.+. +|++++|||+||..|+..+ +. .. ..||.||..+. ..+..
T Consensus 11 ~~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~-~~-~~-----------~~CP~Cr~~~~--------~~~~~ 65 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQ----NPVVTKCRHYFCESCALEH-FR-AT-----------PRCYICDQPTG--------GIFNP 65 (81)
T ss_dssp CCCCCSBCSSSCSBCC----SEEECTTSCEEEHHHHHHH-HH-HC-----------SBCSSSCCBCC--------SCCEE
T ss_pred cCCCCCCCcCCCchhc----CeeEccCCCHhHHHHHHHH-HH-CC-----------CcCCCcCcccc--------ccCCc
Confidence 4457899999999999 9999999999999999995 33 32 16999997753 34556
Q ss_pred hHHHHHHHHHHhcc
Q 036732 119 NYFLLWMVESMNGD 132 (266)
Q Consensus 119 N~~l~~~ve~~~~~ 132 (266)
|. .+++.++..
T Consensus 66 ~~---~l~~~~~~~ 76 (81)
T 2csy_A 66 AK---ELMAKLQKS 76 (81)
T ss_dssp CH---HHHHHHSSS
T ss_pred HH---HHHHHHHhh
Confidence 64 444444443
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=2.3e-13 Score=100.11 Aligned_cols=58 Identities=26% Similarity=0.524 Sum_probs=44.5
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...+++.++|+||++.+. +|++++|||+||..|+..+ +...... .....||.||..+.
T Consensus 13 ~~~~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~-~~~~~~~------~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLK----EPVSADCNHSFCRACITLN-YESNRNT------DGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCCCTTTSCTTTCSCCS----SCEECTTSCCBCHHHHHHH-HHHSBCT------TSCBCCTTTCCCCC
T ss_pred HHhCccCCCCcCCChhhC----cceeCCCCCHHHHHHHHHH-HHhccCC------CCCCCCCCCCCcCC
Confidence 345678899999999999 9999999999999999995 4442100 01247999998754
No 11
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=3.4e-12 Score=97.06 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=60.8
Q ss_pred CCCcccccccccccccCCCCcEEec-CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcc--cccc-cccceecCCCCC
Q 036732 40 REESLECPICWESFNMVENVPYVLW-CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPW--CNLL-SFRVVYKGNLKF 115 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~-CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~--CR~~-~~~~~~~~~~~~ 115 (266)
..+.+.||||++.|. +|++++ |||+||+.||..+ |...+... ....||. |+.. +. ..+
T Consensus 4 ~~~~~~CPI~~~~~~----dPV~~~~cGh~f~r~cI~~~-l~~~~~~~------~~~~CP~tgc~~~~l~-------~~~ 65 (94)
T 2yu4_A 4 GSSGFTCPITKEEMK----KPVKNKVCGHTYEEDAIVRM-IESRQKRK------KKAYCPQIGCSHTDIR-------KSD 65 (94)
T ss_dssp CSSCCBCTTTCSBCS----SEEEESSSCCEEEHHHHHHH-HHHHHTTT------CCBCCCSTTCCCCCBC-------GGG
T ss_pred CCcEeECcCcCchhc----CCEEcCCCCCeecHHHHHHH-HHHccCcC------CCCCCCcCcCcccccC-------Hhh
Confidence 457899999999999 999996 9999999999997 65431100 1136999 9855 43 367
Q ss_pred CcchHHHHHHHHHHhcccCC
Q 036732 116 PRKNYFLLWMVESMNGDRVK 135 (266)
Q Consensus 116 ~~~N~~l~~~ve~~~~~~~~ 135 (266)
+.+|..+.++++.++....+
T Consensus 66 L~pn~~L~~~I~~~~~~~~r 85 (94)
T 2yu4_A 66 LIQDEALRRAIENHNKKRHR 85 (94)
T ss_dssp EEECHHHHHHHHHHHTTCCS
T ss_pred CcCCHHHHHHHHHHHHHhcc
Confidence 88999999999999876543
No 12
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.30 E-value=3.4e-13 Score=105.65 Aligned_cols=81 Identities=22% Similarity=0.382 Sum_probs=57.5
Q ss_pred ccccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCC
Q 036732 34 VSSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNL 113 (266)
Q Consensus 34 ~~~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~ 113 (266)
.......+++++|+||++.+. +|++++|||+||..|+..+ +...+ ..||.||..+.........
T Consensus 6 ~~~~~~~~~~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~-~~~~~-----------~~CP~Cr~~~~~~~~~~~~ 69 (115)
T 3l11_A 6 PKDAIPSLSECQCGICMEILV----EPVTLPCNHTLCKPCFQST-VEKAS-----------LCCPFCRRRVSSWTRYHTR 69 (115)
T ss_dssp CTTCCCCHHHHBCTTTCSBCS----SCEECTTSCEECHHHHCCC-CCTTT-----------SBCTTTCCBCHHHHHHHHH
T ss_pred cccccCCCCCCCCccCCcccC----ceeEcCCCCHHhHHHHHHH-HhHCc-----------CCCCCCCcccCcccccccc
Confidence 334455667899999999999 9999999999999999984 32211 2699999875410000012
Q ss_pred CCCcchHHHHHHHHHHh
Q 036732 114 KFPRKNYFLLWMVESMN 130 (266)
Q Consensus 114 ~~~~~N~~l~~~ve~~~ 130 (266)
.+...|..+.++++.+.
T Consensus 70 ~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 70 RNSLVNVELWTIIQKHY 86 (115)
T ss_dssp TTCCBCHHHHHHHHHHS
T ss_pred ccchhhHHHHHHHHHHC
Confidence 45667888888887654
No 13
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=107.36 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=58.5
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCcc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPRK 118 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~ 118 (266)
.+++.+.|+||++.+. +|++++|||+||..||..+ +.... ..||.||..+.. ...+..
T Consensus 74 ~l~~~~~C~IC~~~~~----~pv~~~CgH~fC~~Ci~~~-~~~~~-----------~~CP~Cr~~~~~------~~~l~~ 131 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVY----QPVTTECFHNVCKDCLQRS-FKAQV-----------FSCPACRHDLGQ------NYIMIP 131 (150)
T ss_dssp HHHHHTBCTTTSSBCS----SEEECTTSCEEEHHHHHHH-HHTTC-----------CBCTTTCCBCCT------TCCCCB
T ss_pred hCccCCEeecCChhhc----CCEEcCCCCchhHHHHHHH-HHhCC-----------CcCCCCCccCCC------CCCCCC
Confidence 3456789999999999 9999999999999999995 33221 269999987651 127889
Q ss_pred hHHHHHHHHHHhccc
Q 036732 119 NYFLLWMVESMNGDR 133 (266)
Q Consensus 119 N~~l~~~ve~~~~~~ 133 (266)
|..+.++++.+....
T Consensus 132 n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 132 NEILQTLLDLFFPGY 146 (150)
T ss_dssp CHHHHHHHHHHSTTT
T ss_pred CHHHHHHHHHHhhHh
Confidence 999999999887544
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3e-12 Score=91.89 Aligned_cols=57 Identities=30% Similarity=0.655 Sum_probs=44.5
Q ss_pred cccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 35 SSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 35 ~~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
.....+++.++|+||++.+. +|++++|||+||..|+..+ +...+. ...||.||..+.
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~-~~~~~~---------~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 12 QFVNKLQEEVICPICLDILQ----KPVTIDCGHNFCLKCITQI-GETSCG---------FFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCCCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHH-CSSSCS---------CCCCSSSCCCCC
T ss_pred HHHHhCccCCEeccCCcccC----CeEEcCCCChhhHHHHHHH-HHcCCC---------CCCCCCCCCcCC
Confidence 34456678999999999999 9999999999999999994 321111 136999997754
No 15
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.4e-13 Score=99.91 Aligned_cols=58 Identities=31% Similarity=0.667 Sum_probs=44.1
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...+++.++|+||++.+. +|++++|||+||..|+..+ +....... ....||.||..+.
T Consensus 13 ~~~~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~-~~~~~~~~------~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLT----QPLSLDCGHSFCQACLTAN-HKKSMLDK------GESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCCCTTTCSCCS----SCBCCSSSCCBCTTHHHHH-HHHHHHTT------SCCCCTTTCCSSC
T ss_pred HHHccCCCCCCCCCcccC----CceeCCCCCHHHHHHHHHH-HHHhhcCC------CCCcCCCCCCccC
Confidence 345678899999999999 9999999999999999995 43311000 0136999998754
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.28 E-value=8.3e-14 Score=101.57 Aligned_cols=58 Identities=33% Similarity=0.607 Sum_probs=43.7
Q ss_pred ccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..+++.++|+||++.+. +|++++|||+||..|+.++ +...... ......||.||..+.
T Consensus 7 ~~~~~~~~C~IC~~~~~----~p~~l~CgH~fC~~Ci~~~-~~~~~~~-----~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 7 GNVQEEVTCPICLELLT----EPLSLDCGHSLCRACITVS-NKEAVTS-----MGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCCEETTTTEECS----SCCCCSSSCCCCHHHHSCC-CCCCSSS-----CCCCCCCSSSCCCCC
T ss_pred hhcccCCCCcCCCcccC----CeeECCCCCHHHHHHHHHH-HHhcccC-----CCCCCcCCCCCCcCC
Confidence 45678999999999999 9999999999999999984 3321100 011247999998754
No 17
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.1e-12 Score=88.93 Aligned_cols=52 Identities=33% Similarity=0.761 Sum_probs=41.4
Q ss_pred cccccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccc
Q 036732 35 SSVVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 100 (266)
Q Consensus 35 ~~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~C 100 (266)
.....+++.++|+||++.+. +|++++|||+||..||.++ +...+. ...||.|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~-~~~~~~---------~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQ----KPVTIDCGHNFCLKCITQI-GETSCG---------FFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCS----SCEECTTSSEECHHHHHHH-HHHCSS---------CCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhC----CeEEeCCCCcchHHHHHHH-HHcCCC---------CCcCcCC
Confidence 44556778999999999999 9999999999999999995 332211 1269998
No 18
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=2.1e-12 Score=100.12 Aligned_cols=75 Identities=23% Similarity=0.398 Sum_probs=57.9
Q ss_pred cccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCC
Q 036732 37 VVSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKF 115 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 115 (266)
...+++.++|+||++.+. +|+++ +|||+||..||..+ ...+ ..||.||..+.. ......
T Consensus 9 ~~~~~~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~--~~~~-----------~~CP~Cr~~~~~---~~~~~~ 68 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFI----DATTIIECLHSFCKTCIVRY--LETS-----------KYCPICDVQVHK---TRPLLN 68 (108)
T ss_dssp HHHHGGGTBCTTTSSBCS----SEEEETTTCCEEEHHHHHHH--HTSC-----------SBCTTTCCBSCS---SCGGGG
T ss_pred hhccCCcCCCccCChHHh----CcCEeCCCCChhhHHHHHHH--HHhC-----------CcCcCCCccccc---cCcccc
Confidence 345678999999999999 99998 99999999999994 3332 169999987541 111225
Q ss_pred CcchHHHHHHHHHHhc
Q 036732 116 PRKNYFLLWMVESMNG 131 (266)
Q Consensus 116 ~~~N~~l~~~ve~~~~ 131 (266)
+..|..+.++++.+..
T Consensus 69 l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 69 IRSDKTLQDIVYKLVP 84 (108)
T ss_dssp EEECHHHHHHHHHHST
T ss_pred cCcCHHHHHHHHHHhh
Confidence 6789999999987754
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=5.1e-12 Score=91.56 Aligned_cols=53 Identities=25% Similarity=0.488 Sum_probs=42.8
Q ss_pred cccCCCcccccccccccccCCCCcEEec-CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLW-CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~-CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
...+++.++|+||++.+. +|++++ |||+||..||..+ +...+. ..||.||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~-~~~~~~----------~~CP~Cr~~~ 62 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMT----DAVVIPCCGNSYCDECIRTA-LLESDE----------HTCPTCHQND 62 (74)
T ss_dssp CCCSCGGGSCSSSCCCCT----TCEECSSSCCEECTTHHHHH-HHHSSS----------SCCSSSCCSS
T ss_pred cccCCCCCCCcCCChHHh----CCeEcCCCCCHHHHHHHHHH-HHhcCC----------CcCCCCCCcC
Confidence 345678999999999999 999999 9999999999995 333221 2699999753
No 20
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.24 E-value=3e-12 Score=106.44 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=57.0
Q ss_pred cccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCC
Q 036732 37 VVSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKF 115 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 115 (266)
...+++.+.|+||++.+. +|+++ +|||+||..||..+ +...+ ..||.||..+.. ...
T Consensus 48 ~~~~~~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~-~~~~~-----------~~CP~Cr~~~~~------~~~ 105 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLK----NTMTTKECLHRFCADCIITA-LRSGN-----------KECPTCRKKLVS------KRS 105 (165)
T ss_dssp --CCHHHHBCTTTSSBCS----SEEEETTTCCEEEHHHHHHH-HHTTC-----------CBCTTTCCBCCS------GGG
T ss_pred hhhCCCCCCCcccChHhh----CcCEeCCCCChhHHHHHHHH-HHhCc-----------CCCCCCCCcCCC------ccc
Confidence 345567889999999999 99998 99999999999995 33212 269999977531 256
Q ss_pred CcchHHHHHHHHHHhccc
Q 036732 116 PRKNYFLLWMVESMNGDR 133 (266)
Q Consensus 116 ~~~N~~l~~~ve~~~~~~ 133 (266)
+..|..+.++++.+....
T Consensus 106 l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 106 LRPDPNFDALISKIYPSR 123 (165)
T ss_dssp EEECHHHHHHHHHHC---
T ss_pred CCcCHHHHHHHHHHHcch
Confidence 789999999999887643
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.6e-12 Score=95.27 Aligned_cols=59 Identities=39% Similarity=0.811 Sum_probs=44.6
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...+++.++|+||++.+...++.|++++|||+||..|+.++ +..... ...||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~-~~~~~~---------~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKL-LASSIN---------GVRCPFCSKITR 67 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHH-HHHCSS---------CBCCTTTCCCBC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHH-HHcCCC---------CcCCCCCCCccc
Confidence 34567889999999999944334999999999999999995 333211 136999997653
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.6e-12 Score=90.31 Aligned_cols=52 Identities=27% Similarity=0.547 Sum_probs=42.8
Q ss_pred cccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...+++.++|+||++.+. +|+++ +|||+||..||.++ ...+ ..||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~--~~~~-----------~~CP~Cr~~~~ 61 (72)
T 2djb_A 9 LSELTPYILCSICKGYLI----DATTITECLHTFCKSCIVRH--FYYS-----------NRCPKCNIVVH 61 (72)
T ss_dssp CCCCCGGGSCTTTSSCCS----SCEECSSSCCEECHHHHHHH--HHHC-----------SSCTTTCCCCC
T ss_pred HhhcCCCCCCCCCChHHH----CcCEECCCCCHHHHHHHHHH--HHcC-----------CcCCCcCcccC
Confidence 345678999999999999 99998 99999999999995 3332 15999998754
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=3.1e-12 Score=103.64 Aligned_cols=49 Identities=39% Similarity=0.773 Sum_probs=40.8
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.+++.++|+||++.+. +|++++|||+||..||.. |...+ ..||.||..+
T Consensus 49 ~~~~~~~C~iC~~~~~----~~~~~~CgH~fc~~Ci~~--~~~~~-----------~~CP~Cr~~~ 97 (138)
T 4ayc_A 49 VLENELQCIICSEYFI----EAVTLNCAHSFCSYCINE--WMKRK-----------IECPICRKDI 97 (138)
T ss_dssp HHHHHSBCTTTCSBCS----SEEEETTSCEEEHHHHHH--HTTTC-----------SBCTTTCCBC
T ss_pred hccccCCCcccCcccC----CceECCCCCCccHHHHHH--HHHcC-----------CcCCCCCCcC
Confidence 3456789999999999 999999999999999998 43332 1699999775
No 24
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.23 E-value=6.7e-12 Score=111.23 Aligned_cols=72 Identities=14% Similarity=0.019 Sum_probs=60.2
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCcc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPRK 118 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~ 118 (266)
...+.+.||||++.+. +|++++|||+||+.||..+ |...+. .||.||..+. ..++.+
T Consensus 204 ~~~~~~~c~i~~~~~~----dPv~~~~gh~f~~~~i~~~-~~~~~~-----------~cP~~~~~~~-------~~~l~~ 260 (281)
T 2c2l_A 204 DIPDYLCGKISFELMR----EPCITPSGITYDRKDIEEH-LQRVGH-----------FNPVTRSPLT-------QEQLIP 260 (281)
T ss_dssp CCCSTTBCTTTCSBCS----SEEECSSCCEEETTHHHHH-HHHTCS-----------SCTTTCCCCC-------GGGCEE
T ss_pred CCCcccCCcCcCCHhc----CCeECCCCCEECHHHHHHH-HHHCCC-----------CCcCCCCCCc-------hhcCcc
Confidence 4457899999999999 9999999999999999996 554331 4999998765 367899
Q ss_pred hHHHHHHHHHHhccc
Q 036732 119 NYFLLWMVESMNGDR 133 (266)
Q Consensus 119 N~~l~~~ve~~~~~~ 133 (266)
|..+.++++.+....
T Consensus 261 n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 261 NLAMKEVIDAFISEN 275 (281)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHC
Confidence 999999999887654
No 25
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=1.2e-12 Score=103.12 Aligned_cols=70 Identities=24% Similarity=0.452 Sum_probs=58.5
Q ss_pred cccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCC
Q 036732 37 VVSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKF 115 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 115 (266)
...+++.++|+||++.+. +|+++ +|||+||..||..+ +. . .||.||..+. ..+
T Consensus 16 ~~~l~~~~~C~IC~~~~~----~pv~~~~CgH~fC~~Ci~~~-~~--~------------~CP~Cr~~~~-------~~~ 69 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILR----EPVCLGGCEHIFCSNCVSDC-IG--T------------GCPVCYTPAW-------IQD 69 (117)
T ss_dssp HHHHHHTTSCSSSCSCCS----SCBCCCSSSCCBCTTTGGGG-TT--T------------BCSSSCCBCS-------CSS
T ss_pred HHhchhCCCCCCCChHhh----CccEeCCCCCHHHHHHHHHH-hc--C------------CCcCCCCcCc-------ccc
Confidence 445678999999999999 99999 99999999999985 33 1 5999998754 367
Q ss_pred CcchHHHHHHHHHHhcc
Q 036732 116 PRKNYFLLWMVESMNGD 132 (266)
Q Consensus 116 ~~~N~~l~~~ve~~~~~ 132 (266)
+..|..+.++++.++..
T Consensus 70 ~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 70 LKINRQLDSMIQLCSKL 86 (117)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 88999999999887653
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=7.4e-12 Score=88.46 Aligned_cols=53 Identities=25% Similarity=0.558 Sum_probs=42.6
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...+++.++|+||++.+. +|++++|||+||..|+.++ +...+ ..||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~-~~~~~-----------~~CP~Cr~~~~ 61 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLC----SPKQTECGHRFCESCMAAL-LSSSS-----------PKCTACQESIV 61 (66)
T ss_dssp CCSCCCCEECTTTCCEES----SCCCCSSSCCCCHHHHHHH-HTTSS-----------CCCTTTCCCCC
T ss_pred hhcCCcCCCCCCCChHhc----CeeECCCCCHHHHHHHHHH-HHhCc-----------CCCCCCCcCCC
Confidence 345578899999999999 9999999999999999995 32221 26999997643
No 27
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.18 E-value=1.4e-11 Score=97.05 Aligned_cols=71 Identities=25% Similarity=0.401 Sum_probs=55.0
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCC
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFP 116 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 116 (266)
...+++.++|+||++.+. +|++++|||+||..||.++ +...+. .||.||..+. ...+
T Consensus 12 ~~~~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~-~~~~~~-----------~CP~Cr~~~~-------~~~~ 68 (118)
T 3hct_A 12 DPPLESKYECPICLMALR----EAVQTPCGHRFCKACIIKS-IRDAGH-----------KCPVDNEILL-------ENQL 68 (118)
T ss_dssp SSCCCGGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHH-HHHHCS-----------BCTTTCCBCC-------GGGC
T ss_pred ccCCCCCCCCCcCChhhc----CeEECCcCChhhHHHHHHH-HhhCCC-----------CCCCCCCCcC-------HHhc
Confidence 446678999999999999 9999999999999999995 333321 5999998764 2455
Q ss_pred cchHHHHHHHHHHh
Q 036732 117 RKNYFLLWMVESMN 130 (266)
Q Consensus 117 ~~N~~l~~~ve~~~ 130 (266)
..+..+.++++.++
T Consensus 69 ~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 69 FPDNFAKREILSLM 82 (118)
T ss_dssp EECHHHHHHHHTSE
T ss_pred ccCHHHHHHHccce
Confidence 67777777776444
No 28
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=2.3e-12 Score=99.91 Aligned_cols=53 Identities=36% Similarity=0.653 Sum_probs=42.3
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
.+++.+.|+||++.+. +|++++|||+||..|+..+ +...+. ...||.||..+.
T Consensus 17 ~~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~-~~~~~~---------~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 17 AMQKILECPICLELIK----EPVSTKCDHIFCKFCMLKL-LNQKKG---------PSQCPLCKNDIT 69 (112)
T ss_dssp HHHHHTSCSSSCCCCS----SCCBCTTSCCCCSHHHHHH-HHSSSS---------SCCCTTTSCCCC
T ss_pred hccCCCCCcccChhhc----CeEECCCCCHHHHHHHHHH-HHhCCC---------CCCCcCCCCcCC
Confidence 4456889999999999 9999999999999999995 332221 136999998765
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=88.15 Aligned_cols=50 Identities=26% Similarity=0.514 Sum_probs=41.2
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...+.++|+||++.+. +|+.++|||.||..|+.+ |...+ ..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~--~~~~~-----------~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCV----HPVSLPCKHVFCYLCVKG--ASWLG-----------KRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCS----SEEEETTTEEEEHHHHHH--CTTCS-----------SBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccC----CCEEccCCCHHHHHHHHH--HHHCC-----------CcCcCcCchhC
Confidence 3457889999999999 999999999999999998 44332 16999997653
No 30
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.17 E-value=1.9e-11 Score=103.68 Aligned_cols=73 Identities=14% Similarity=-0.007 Sum_probs=61.1
Q ss_pred ccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCCc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFPR 117 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~ 117 (266)
....+.+.||||+++|. +|++++|||+||+.||..+ |...+. .||.|+..+. ..++.
T Consensus 101 ~~ip~~f~CPI~~elm~----DPV~~~~Ghtfer~~I~~~-l~~~~~-----------tcP~t~~~l~-------~~~L~ 157 (179)
T 2f42_A 101 REIPDYLCGKISFELMR----EPCITPSGITYDRKDIEEH-LQRVGH-----------FDPVTRSPLT-------QDQLI 157 (179)
T ss_dssp CCCCGGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHH-HHHTCS-----------BCTTTCCBCC-------GGGCE
T ss_pred cCCcHhhcccCccccCC----CCeECCCCCEECHHHHHHH-HHhCCC-----------CCCCCcCCCC-------hhhCc
Confidence 34568999999999999 9999999999999999996 654331 4999998765 36889
Q ss_pred chHHHHHHHHHHhccc
Q 036732 118 KNYFLLWMVESMNGDR 133 (266)
Q Consensus 118 ~N~~l~~~ve~~~~~~ 133 (266)
+|..+.++++.+....
T Consensus 158 pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 158 PNLAMKEVIDAFIQEN 173 (179)
T ss_dssp ECHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHC
Confidence 9999999999887543
No 31
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3e-11 Score=107.69 Aligned_cols=77 Identities=16% Similarity=0.293 Sum_probs=62.5
Q ss_pred cccccccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcc--ccccccccee
Q 036732 33 DVSSVVSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPW--CNLLSFRVVY 109 (266)
Q Consensus 33 ~~~~~~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~--CR~~~~~~~~ 109 (266)
+..........++||||++.|. +|++. .|||+||+.||..+ |...+ ...||+ |++.+.
T Consensus 171 DDI~v~~~~~el~CPIcl~~f~----DPVts~~CGHsFcR~cI~~~-~~~~~----------~~~CPvtGCr~~l~---- 231 (267)
T 3htk_C 171 DDLQIEGGKIELTCPITCKPYE----APLISRKCNHVFDRDGIQNY-LQGYT----------TRDCPQAACSQVVS---- 231 (267)
T ss_dssp SCCCCCSSBCCSBCTTTSSBCS----SEEEESSSCCEEEHHHHHHH-STTCS----------CEECSGGGCSCEEC----
T ss_pred ccceecCCceeeECcCccCccc----CCeeeCCCCCcccHHHHHHH-HHhCC----------CCCCCcccccCcCc----
Confidence 3344556788999999999999 99986 99999999999997 65432 147999 998765
Q ss_pred cCCCCCCcchHHHHHHHHHHhc
Q 036732 110 KGNLKFPRKNYFLLWMVESMNG 131 (266)
Q Consensus 110 ~~~~~~~~~N~~l~~~ve~~~~ 131 (266)
..++.+|..+.++++..+.
T Consensus 232 ---~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 232 ---MRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp ---GGGEEECHHHHHHHHHHHH
T ss_pred ---hhhCCcCHHHHHHHHHHHH
Confidence 4788999999999987654
No 32
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.14 E-value=1.4e-11 Score=87.78 Aligned_cols=50 Identities=24% Similarity=0.606 Sum_probs=40.5
Q ss_pred cCCCcccccccccccccCCCCc-------EEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 39 SREESLECPICWESFNMVENVP-------YVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P-------~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..++..+|+||++.+. +| +.++|||+||..|+.+ |...+. .||.||..+.
T Consensus 6 ~~~~~~~C~IC~~~~~----~~~~~~~~~~~~~CgH~fc~~Ci~~--~~~~~~-----------~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYS----EIVQNGRLIVSTECGHVFCSQCLRD--SLKNAN-----------TCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHH----HHHTTTCCEEECTTSCEEEHHHHHH--HHHHCS-----------BCTTTCCBCC
T ss_pred CCCCCCCCcccChhhh----ccccccCCeEeCCCCChHhHHHHHH--HHHcCC-----------CCCCCCCccC
Confidence 3457899999999998 66 8899999999999999 443331 6999997754
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=82.80 Aligned_cols=37 Identities=30% Similarity=0.789 Sum_probs=33.1
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHh
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGL 77 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l 77 (266)
...+++.++|+||++.+. +|++++|||+||..||.++
T Consensus 9 ~~~~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLK----EPVIIECGHNFCKACITRW 45 (58)
T ss_dssp SSCSCCCCBCSSSCCBCS----SCCCCSSCCCCCHHHHHHH
T ss_pred hhccccCCCCccCCcccC----ccEeCCCCCccCHHHHHHH
Confidence 345567899999999999 9999999999999999994
No 34
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.4e-11 Score=85.83 Aligned_cols=55 Identities=22% Similarity=0.587 Sum_probs=41.1
Q ss_pred cccCCCcccccccccccccC---CCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 37 VVSREESLECPICWESFNMV---ENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~---~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
....++...|+||++.+... .+.++.++|||.||..|+.+ |...+. .||+||..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~--~~~~~~-----------~CP~Cr~~~ 66 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD--SLKNAN-----------TCPTCRKKI 66 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHH--HHHHCS-----------SCTTTCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHH--HHHcCC-----------CCCCCCCcc
Confidence 34556889999999999821 11228899999999999999 443321 599999764
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=3.8e-11 Score=84.48 Aligned_cols=48 Identities=33% Similarity=0.698 Sum_probs=38.5
Q ss_pred Cccccccccc-ccccCCCCc----EEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWE-SFNMVENVP----YVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~-~f~~~~~~P----~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
++++|+||++ .+. +| ++++|||+||..|+.++ +...+ ..||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~----~~~~~~~~~~CgH~fC~~Ci~~~-~~~~~-----------~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYR----NPSLKLMVNVCGHTLCESCVDLL-FVRGA-----------GNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHH----CSSCCEEECTTCCCEEHHHHHHH-HHTTS-----------SSCTTTCCCCS
T ss_pred CCCcCCcCCCCccC----CCccCeecCCCCCHhHHHHHHHH-HHcCC-----------CcCCCCCCccc
Confidence 5789999999 898 66 67899999999999995 34322 26999998754
No 36
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.10 E-value=3.7e-11 Score=94.11 Aligned_cols=52 Identities=31% Similarity=0.629 Sum_probs=42.6
Q ss_pred ccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..+++.+.|+||++.+. +|++++|||+||..||.++ +...+ ..||.||..+.
T Consensus 18 ~~~~~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~-~~~~~-----------~~CP~Cr~~~~ 69 (116)
T 1rmd_A 18 AHFVKSISCQICEHILA----DPVETSCKHLFCRICILRC-LKVMG-----------SYCPSCRYPCF 69 (116)
T ss_dssp HHHHHHTBCTTTCSBCS----SEEECTTSCEEEHHHHHHH-HHHTC-----------SBCTTTCCBCC
T ss_pred HhccCCCCCCCCCcHhc----CcEEcCCCCcccHHHHHHH-HhHCc-----------CcCCCCCCCCC
Confidence 44567899999999999 9999999999999999995 33322 15999998754
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.05 E-value=6.9e-11 Score=87.03 Aligned_cols=54 Identities=24% Similarity=0.570 Sum_probs=40.4
Q ss_pred ccCCCcccccccccccccCCCCcEEec--CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLW--CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~--CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..++++++||||++.+.. .++.+++ |||+||..|+..+ |...+ ..||.||+.+.
T Consensus 6 ~~~~~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~-~~~~~-----------~~CP~CR~~~~ 61 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRI-RTDEN-----------GLCPACRKPYP 61 (78)
T ss_dssp CCCCCCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHH-TTSSC-----------SBCTTTCCBCS
T ss_pred cccccCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHH-HhcCC-----------CCCCCCCCccC
Confidence 345788999999998752 2445555 9999999999997 64322 26999997654
No 38
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=2.3e-11 Score=83.67 Aligned_cols=45 Identities=31% Similarity=0.602 Sum_probs=38.5
Q ss_pred CCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
++.++|+||++.+. +|++++|||+||..|+.. | . ..||.||..+.
T Consensus 4 ~~~~~C~IC~~~~~----~p~~l~CgH~fC~~Ci~~--~--~------------~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAK----CPKLLPCLHTLCSGCLEA--S--G------------MQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCB----CCSCSTTSCCSBTTTCSS--S--S------------SSCSSCCSSSS
T ss_pred ccCCCceEeCCccC----CeEEcCCCCcccHHHHcc--C--C------------CCCCcCCcEee
Confidence 47899999999999 999999999999999876 2 1 26999998754
No 39
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.03 E-value=1.4e-10 Score=84.32 Aligned_cols=53 Identities=32% Similarity=0.644 Sum_probs=40.0
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..++..+|+||++.|.... ..+.++|||.||..||.+ |...+. .||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~--~~~~~~-----------~CP~Cr~~~~ 63 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVP--WLEQHD-----------SCPVCRKSLT 63 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHH--HHTTTC-----------SCTTTCCCCC
T ss_pred cCCCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHH--HHHcCC-----------cCcCcCCccC
Confidence 4457889999999997222 336679999999999999 443321 5999997754
No 40
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.02 E-value=1.4e-10 Score=94.62 Aligned_cols=52 Identities=21% Similarity=0.516 Sum_probs=43.3
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
...+++.++|+||++.+. +|+.++|||+||..||.++ +...+ ..||.||..+
T Consensus 25 ~~~l~~~~~C~IC~~~~~----~pv~~~CgH~FC~~Ci~~~-~~~~~-----------~~CP~Cr~~~ 76 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLR----RPFQAQCGHRYCSFCLASI-LSSGP-----------QNCAACVHEG 76 (141)
T ss_dssp GGGCCGGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHH-GGGSC-----------EECHHHHHTT
T ss_pred hccCCcCcCCCCCChhhc----CcEECCCCCccCHHHHHHH-HhcCC-----------CCCCCCCCcc
Confidence 356788999999999999 9999999999999999995 43222 2699999753
No 41
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.01 E-value=1.6e-10 Score=96.36 Aligned_cols=71 Identities=25% Similarity=0.401 Sum_probs=54.7
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCC
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFP 116 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 116 (266)
...+++.+.|+||++.+. +|+.++|||+||..|+.++ +...+. .||.||..+. ...+
T Consensus 12 ~~~~~~~~~C~IC~~~~~----~pv~~~CgH~fC~~Ci~~~-~~~~~~-----------~CP~Cr~~~~-------~~~~ 68 (170)
T 3hcs_A 12 DPPLESKYECPICLMALR----EAVQTPCGHRFCKACIIKS-IRDAGH-----------KCPVDNEILL-------ENQL 68 (170)
T ss_dssp SSCCCGGGBCTTTCSBCS----SEEECTTSCEEEHHHHHHH-HHHHCS-----------BCTTTCCBCC-------GGGC
T ss_pred ccCCCCCCCCCCCChhhc----CcEECCCCCHHHHHHHHHH-HHhCCC-----------CCCCCccCcc-------hhhh
Confidence 346678999999999999 9999999999999999995 433321 5999997754 2445
Q ss_pred cchHHHHHHHHHHh
Q 036732 117 RKNYFLLWMVESMN 130 (266)
Q Consensus 117 ~~N~~l~~~ve~~~ 130 (266)
..+..+.+.+..+.
T Consensus 69 ~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 69 FPDNFAKREILSLM 82 (170)
T ss_dssp EECHHHHHHHHTSE
T ss_pred hhhHHHHHHHhhcc
Confidence 56777777766544
No 42
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.00 E-value=8e-11 Score=81.91 Aligned_cols=51 Identities=24% Similarity=0.614 Sum_probs=38.6
Q ss_pred CcccccccccccccC---CCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWESFNMV---ENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~f~~~---~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
+.++|+||++.+... .+.++.++|||.||..|+.+ |...+. .||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~--~~~~~~-----------~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD--SLKNAN-----------TCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHH--HHHHCS-----------BCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHH--HHHcCC-----------CCCCCCccCC
Confidence 578999999999821 12238899999999999999 443321 6999997754
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=3e-10 Score=80.57 Aligned_cols=53 Identities=21% Similarity=0.459 Sum_probs=40.8
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..++...|+||++.+... ..++.++|||.||..|+.+ |...+. .||.||..+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~--~~~~~~-----------~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQ--WLITNK-----------KCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHH--HHHHCS-----------BCTTTCSBSC
T ss_pred cCCCCCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHH--HHHcCC-----------CCcCcCcccc
Confidence 345678999999988622 2678899999999999999 544332 5999997754
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.00 E-value=1.8e-10 Score=77.96 Aligned_cols=50 Identities=36% Similarity=0.663 Sum_probs=40.0
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+..+|+||++.+...++.++.++|||.||..|+.+ |...+. .||.||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~--~~~~~~-----------~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEE--MLKEGY-----------RCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHH--HHHHTC-----------CCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHH--HHHcCC-----------cCCCCCCcC
Confidence 56789999999975555688899999999999999 443331 599999653
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.00 E-value=1.9e-10 Score=78.01 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=39.7
Q ss_pred CCCcccccccccccccCCCCcEEec-CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 40 REESLECPICWESFNMVENVPYVLW-CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~-CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
++++.+|+||++.+..++ .++.++ |||.||..|+.+ |...+. .||.||..+
T Consensus 2 ~~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~--w~~~~~-----------~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGE-EARFLPRCGHGFHAECVDM--WLGSHS-----------TCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTS-CCEECSSSCCEECTTHHHH--TTTTCC-----------SCSSSCCCS
T ss_pred CCCCCcCccCCccccCCC-ceEECCCCCCcccHHHHHH--HHHcCC-----------cCcCCCCEe
Confidence 457889999999998333 478887 999999999998 543321 599999753
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-10 Score=82.81 Aligned_cols=50 Identities=30% Similarity=0.698 Sum_probs=40.6
Q ss_pred ccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...++..+|+||++.+. + +.++|||.||..|+.+ |...+ ..||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~----~-~~~~CgH~fc~~Ci~~--~~~~~-----------~~CP~Cr~~~~ 59 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRA----D-LILPCAHSFCQKCIDK--WSDRH-----------RNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCSSSCCSCC----S-EEETTTEEECHHHHHH--SSCCC-----------SSCHHHHHCTT
T ss_pred hcCCCCCCCeeCCcCcc----C-cccCCCCcccHHHHHH--HHHCc-----------CcCCCcCCccc
Confidence 44567899999999998 7 8899999999999998 54332 26999997654
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.7e-10 Score=81.24 Aligned_cols=55 Identities=25% Similarity=0.616 Sum_probs=40.6
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
....++..+|+||++.+.... ..++++|||.||..||.+ |...+. .||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~f~~~Ci~~--~~~~~~-----------~CP~Cr~~~~ 63 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRD-ELGICPCKHAFHRKCLIK--WLEVRK-----------VCPLCNMPVL 63 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSS-CEEEETTTEEEEHHHHHH--HHHHCS-----------BCTTTCCBCS
T ss_pred cccCCCCCCCcCCCcccCCCC-cEEEcCCCCEecHHHHHH--HHHcCC-----------cCCCcCcccc
Confidence 345567889999999987322 334559999999999999 544332 5999997754
No 48
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.93 E-value=3.2e-10 Score=80.18 Aligned_cols=48 Identities=31% Similarity=0.661 Sum_probs=38.8
Q ss_pred CCcccccccccccccCCCCc-EEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 41 EESLECPICWESFNMVENVP-YVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P-~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
++..+|+||++.+. +| +.++|||.||..|+.+ |...+. .||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~----~~~~~~~C~H~fc~~Ci~~--~~~~~~-----------~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPS----NYSMALPCLHAFCYVCITR--WIRQNP-----------TCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCC----SCEEETTTTEEESTTHHHH--HHHHSC-----------STTTTCCCCC
T ss_pred CCCCCCeeCCcccc----CCcEecCCCCeeHHHHHHH--HHhCcC-----------cCcCCChhhH
Confidence 35779999999998 86 6789999999999999 544331 5999997654
No 49
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.92 E-value=1.4e-10 Score=84.21 Aligned_cols=48 Identities=27% Similarity=0.565 Sum_probs=41.1
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCCh-hhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHT-LCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHt-FC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...+++.+.|+||++.+. +|++++|||. ||..|+.. | . .||.||..+.
T Consensus 18 ~~~~~~~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~--~---~------------~CP~Cr~~i~ 66 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNI----AIVFVPCGHLVTCKQCAEA--V---D------------KCPMCYTVIT 66 (74)
T ss_dssp HHHHHHHTBCTTTSSSBC----CEEEETTCCBCCCHHHHTT--C---S------------BCTTTCCBCS
T ss_pred HhcCccCCCCCCCCCCCC----CEEEcCCCChhHHHHhhhc--C---c------------cCCCcCcCcc
Confidence 445667899999999999 9999999999 99999987 4 1 5999998754
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=5e-10 Score=80.88 Aligned_cols=51 Identities=27% Similarity=0.612 Sum_probs=38.8
Q ss_pred CCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 40 REESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
.++..+|+||++.+...+ ..+.++|||.||..|+.+ |...+. .||+||..+
T Consensus 20 ~~~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~--w~~~~~-----------~CP~Cr~~~ 70 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDK--WLKANR-----------TCPICRADS 70 (75)
T ss_dssp SSSCCEETTTTEECCBTC-EEEEETTTEEEETTHHHH--HHHHCS-----------SCTTTCCCC
T ss_pred cCCCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHH--HHHcCC-----------cCcCcCCcC
Confidence 346789999999998211 227789999999999999 544332 599999764
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.91 E-value=5.7e-10 Score=83.93 Aligned_cols=52 Identities=27% Similarity=0.590 Sum_probs=40.3
Q ss_pred cCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
..++...|+||++.+..++ .++.++|||.||..||.. |...+. .||.||..+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~--wl~~~~-----------~CP~Cr~~~ 87 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSI--WLQKSG-----------TCPVCRCMF 87 (91)
T ss_dssp SSSSCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHH--HHTTTC-----------BCTTTCCBS
T ss_pred ccCCCCCCcccChhhcCCC-cEEecCCCChHHHHHHHH--HHHcCC-----------cCcCcCccC
Confidence 3457889999999998222 378899999999999999 543331 699999764
No 52
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.1e-10 Score=84.70 Aligned_cols=49 Identities=27% Similarity=0.556 Sum_probs=40.7
Q ss_pred ccccCCCcccccccccccccCCCCcEEecCCCh-hhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 36 SVVSREESLECPICWESFNMVENVPYVLWCGHT-LCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 36 ~~~~lee~l~CpICl~~f~~~~~~P~~L~CgHt-FC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
....+++..+|+||++.+. +|++++|||. ||..|+.+. ..||.||..+.
T Consensus 18 ~~~~~~~~~~C~IC~~~~~----~~~~~pCgH~~~C~~C~~~~-----------------~~CP~Cr~~i~ 67 (75)
T 2ecg_A 18 QLRRLQEEKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV-----------------DKCPMCYTVIT 67 (75)
T ss_dssp HHHHHHHHHSCSSSCSSCC----CBCCSSSCCCCBCHHHHHHC-----------------SBCTTTCCBCC
T ss_pred HHHcCCCCCCCCcCCCCCC----CEEEecCCCHHHHHHHhhCC-----------------CCCccCCceec
Confidence 3445567889999999999 9999999999 999999753 15999997654
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.83 E-value=1e-09 Score=86.70 Aligned_cols=48 Identities=25% Similarity=0.690 Sum_probs=39.8
Q ss_pred CCcccccccccccccCCCCc-------EEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 41 EESLECPICWESFNMVENVP-------YVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P-------~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
.+.++|+||++.+. +| +.++|||+||..||.++ +...+ .||.||..+.
T Consensus 5 ~~~~~C~IC~~~~~----~~~~~~~~~~~~~CgH~fc~~Ci~~~-~~~~~------------~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYS----EIVQNGRLIVSTECGHVFCSQCLRDS-LKNAN------------TCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHH----HHHHTTCCEEEETTCCEEEHHHHHHH-HTTCS------------BCTTTCCBCT
T ss_pred CCCCCCcccChhhh----CccccccCeEecCCCChhhHHHHHHH-HHhCC------------CCCCCCCcCc
Confidence 46789999999999 77 99999999999999994 33322 6999998754
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.71 E-value=4.9e-09 Score=81.47 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=36.8
Q ss_pred CcccccccccccccCC--------------CCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWESFNMVE--------------NVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~f~~~~--------------~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
++..|+||++.|.... ...+.++|||.||..||.. |....... ....||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~--wl~~~~~~------~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLA--MYCNGNKD------GSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHH--HHHHTCCS------SCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHH--HHHcccCC------CCCcCCCCCCccC
Confidence 3569999999997211 1112679999999999999 54221100 0136999997643
No 55
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.2e-08 Score=72.90 Aligned_cols=45 Identities=31% Similarity=0.664 Sum_probs=38.4
Q ss_pred CCCcccccccccccccCCCCcEEecCCCh-hhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 40 REESLECPICWESFNMVENVPYVLWCGHT-LCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L~CgHt-FC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
.++...|+||++... +++.+||||. ||..|+..+ ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~~-----------------~~CP~CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV----NWVLLPCRHTCLCDGCVKYF-----------------QQCPMCRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSCC----CCEETTTTBCCSCTTHHHHC-----------------SSCTTTCCCCC
T ss_pred CCCCCCCCCcCcCCC----CEEEECCCChhhhHHHHhcC-----------------CCCCCCCcchh
Confidence 346789999999998 9999999999 999999863 15999998754
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.3e-08 Score=74.83 Aligned_cols=51 Identities=25% Similarity=0.495 Sum_probs=36.6
Q ss_pred Cccccccccccccc----------CCCCcEEec-CCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWESFNM----------VENVPYVLW-CGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~f~~----------~~~~P~~L~-CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
++.+|+||++.+.. .+..++.++ |||.||..||.+ |...+. .||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~--Wl~~~~-----------~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSL--WVKQNN-----------RCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHH--HTTTCC-----------BCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHH--HHHhCC-----------CCCCcCCCcc
Confidence 45668888887762 223366665 999999999999 654432 6999997643
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.65 E-value=7.6e-09 Score=72.92 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=39.1
Q ss_pred CCcccccccccccccCCCCcEEe--cCCCh-hhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVL--WCGHT-LCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L--~CgHt-FC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
+++.+|+||++... +++.+ ||||. ||..|+..+ +...+ .||+||..+.
T Consensus 6 ~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~-~~~~~------------~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKL-KKRNK------------PCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHH-HHTTC------------CCTTTCCCCC
T ss_pred CCcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHH-HHcCC------------cCCCcCcchh
Confidence 35678999999998 99987 99999 899999986 43222 5999998754
No 58
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=3.7e-09 Score=77.71 Aligned_cols=47 Identities=32% Similarity=0.577 Sum_probs=39.9
Q ss_pred ccCCCcccccccccccccCCCCcEEecCCCh-hhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCGHT-LCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CgHt-FC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
..+++...|+||++.+. +|+.+||||. ||..|+..+ + .||.||..+.
T Consensus 13 ~~l~~~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~~-~----------------~CP~Cr~~i~ 60 (79)
T 2yho_A 13 RKLKEAMLCMVCCEEEI----NSTFCPCGHTVCCESCAAQL-Q----------------SCPVCRSRVE 60 (79)
T ss_dssp HHHHHHTBCTTTSSSBC----CEEEETTCBCCBCHHHHTTC-S----------------BCTTTCCBCC
T ss_pred HcCCCCCEeEEeCcccC----cEEEECCCCHHHHHHHHHhc-C----------------cCCCCCchhh
Confidence 34456789999999999 9999999999 999999874 1 4999998765
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.61 E-value=1.2e-08 Score=71.59 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=38.8
Q ss_pred CcccccccccccccCCCCcEEe--cCCCh-hhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVL--WCGHT-LCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L--~CgHt-FC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
....|+||++... +++++ ||||. ||..|+..+ +...+ .||.||..+.
T Consensus 6 ~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~-~~~~~------------~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRL-KKAGA------------SCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHH-HHTTC------------BCTTTCCBCC
T ss_pred cCCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHH-HHhCC------------cCCCcCchhh
Confidence 4668999999988 99888 99998 999999986 44332 5999998754
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.61 E-value=2e-08 Score=94.27 Aligned_cols=49 Identities=27% Similarity=0.594 Sum_probs=39.8
Q ss_pred CCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
+...+|+||++.+. +|+.++|||.||..|+.. |...+. ..||.||..+.
T Consensus 330 ~~~~~C~ICle~~~----~pv~lpCGH~FC~~Ci~~--wl~~~~----------~~CP~CR~~i~ 378 (389)
T 2y1n_A 330 STFQLCKICAENDK----DVKIEPCGHLMCTSCLTS--WQESEG----------QGCPFCRCEIK 378 (389)
T ss_dssp TSSSBCTTTSSSBC----CEEEETTCCEECHHHHHH--HHHHTC----------SBCTTTCCBCC
T ss_pred CCCCCCCccCcCCC----CeEEeCCCChhhHHHHHH--HHhcCC----------CCCCCCCCccC
Confidence 34579999999999 999999999999999988 544211 16999998754
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.60 E-value=1e-08 Score=80.80 Aligned_cols=55 Identities=22% Similarity=0.528 Sum_probs=41.0
Q ss_pred ccCCCccccccccccccc---CCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 38 VSREESLECPICWESFNM---VENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~---~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...++...|+||++.+.. ..+.++.++|||.||..|+.+ |...+. .||.||..+.
T Consensus 67 ~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~--~~~~~~-----------~CP~Cr~~~~ 124 (133)
T 4ap4_A 67 YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD--SLKNAN-----------TCPTCRKKIN 124 (133)
T ss_dssp BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH--HHHHCS-----------BCTTTCCBCC
T ss_pred ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHH--HHHcCC-----------CCCCCCCcCC
Confidence 344678899999999982 112238889999999999999 433321 6999997754
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=5.5e-09 Score=78.81 Aligned_cols=52 Identities=25% Similarity=0.489 Sum_probs=38.6
Q ss_pred CcccccccccccccCCCCcEEe---cCCChhhHHHHHHhhhhhc-cCCCCCCCCCCcccCcc--cccc
Q 036732 42 ESLECPICWESFNMVENVPYVL---WCGHTLCKNCILGLQWAVV-KFPTLPVQLPLFISCPW--CNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L---~CgHtFC~~CL~~l~~~~~-~~~~~~~~~~~~~~CP~--CR~~ 103 (266)
+.++|+||++.+. .|.++ +|||.||..|+.++ |... .... ...+.||. |+..
T Consensus 4 ~~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~-~~~~i~~g~-----~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQY-VELLIKEGL-----ETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHH-HHHHHHHCS-----CCCEECSCTTCSSC
T ss_pred CCcCCcccCcccc----cccceEcCCCCCcccHHHHHHH-HHHHhhcCC-----cccccCccccCCCC
Confidence 5789999999998 77654 79999999999998 6542 1100 01257999 9976
No 63
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.49 E-value=1.7e-08 Score=93.60 Aligned_cols=48 Identities=23% Similarity=0.609 Sum_probs=41.2
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCCh-hhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHT-LCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHt-FC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...+++.+.|+||++.+. +|+.+||||. ||..|+.. | . .||.||..+.
T Consensus 289 ~~~l~~~~~C~IC~~~~~----~~v~lpCgH~~fC~~C~~~--~---~------------~CP~CR~~i~ 337 (345)
T 3t6p_A 289 LRRLQEERTCKVCMDKEV----SVVFIPCGHLVVCQECAPS--L---R------------KCPICRGIIK 337 (345)
T ss_dssp HHHHHTTCBCTTTSSSBC----CEEEETTCCEEECTTTGGG--C---S------------BCTTTCCBCC
T ss_pred HHhCcCCCCCCccCCcCC----ceEEcCCCChhHhHHHHhc--C---C------------cCCCCCCCcc
Confidence 445567899999999999 9999999999 99999987 3 1 5999998754
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.42 E-value=1.2e-07 Score=73.50 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=36.7
Q ss_pred CcccccccccccccC-------------CCC-cEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 42 ESLECPICWESFNMV-------------ENV-PYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 42 e~l~CpICl~~f~~~-------------~~~-P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+...|+||++.|... +.. .+.++|||.|+..||.+ |...+. .||+||...
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~--Wl~~~~-----------~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR--WLKTRQ-----------VCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHH--HHTTCS-----------BCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHH--HHHcCC-----------cCcCCCCcc
Confidence 567899999998821 111 24469999999999999 654432 699999763
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.19 E-value=5.4e-07 Score=62.95 Aligned_cols=46 Identities=13% Similarity=-0.014 Sum_probs=38.0
Q ss_pred cccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 43 SLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 43 ~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
.+.||||++.+. +|+++ +|||+|++.||+++ ....+ .||+++..+.
T Consensus 3 ~~~CpIs~~~m~----dPV~~~~sG~~yer~~I~~~-l~~~~------------~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPR----RPVLSPKSRTIFEKSLLEQY-VKDTG------------NDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCS----SEEEETTTTEEEEHHHHHHH-HHHHS------------BCTTTCCBCC
T ss_pred eEEecCCCCCCC----CCEEeCCCCcEEcHHHHHHH-HHhCC------------CCcCCcCCCC
Confidence 478999999999 99999 99999999999995 23322 4999997754
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=2e-06 Score=63.26 Aligned_cols=52 Identities=19% Similarity=0.412 Sum_probs=38.9
Q ss_pred CCcccccccccccccCCCCcEEecCC-----ChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCG-----HTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~Cg-----HtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
.++..|.||++.+.. .+++++||. |.|+..||.+ |...+.. ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~--~~~l~~pC~C~Gs~h~fH~~Cl~~--Wl~~~~~---------~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDD--ESPLITPCHCTGSLHFVHQACLQQ--WIKSSDT---------RCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCS--SSCEECSSSCCSSSCCEETTHHHH--HHHHHCC---------SBCSSSCCBCC
T ss_pred CCCCCCeEcCccccC--CCeeEeccccCCcCCeeCHHHHHH--HHhhCCC---------CCCCCCCCeee
Confidence 356789999998862 257888996 9999999999 5444321 26999997753
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.07 E-value=5.2e-07 Score=71.21 Aligned_cols=49 Identities=24% Similarity=0.448 Sum_probs=1.0
Q ss_pred Cccccccccccccc-------------CCCCcEE-ecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 42 ESLECPICWESFNM-------------VENVPYV-LWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~-------------~~~~P~~-L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
+...|+||++.|.. ++..+++ ++|+|.|+..||.+ |...+. .||+||..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~--Wl~~~~-----------~CP~Cr~~ 109 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR--WLKTRQ-----------VCPLDNRE 109 (117)
T ss_dssp CC--------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHH--HHHcCC-----------cCCCCCCe
Confidence 45689999999972 1111333 48999999999999 654432 69999976
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.39 E-value=8.6e-05 Score=56.60 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=34.9
Q ss_pred cccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccccc
Q 036732 45 ECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFR 106 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 106 (266)
.|++|.-.+.+ ..+++||.|.||.+|...+ ++.... .||.|+..+.+
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~-~~~~~k-----------~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILH-EKKGDK-----------MCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHH-HHTTCC-----------BCTTTCCBCSE
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHH-HhccCC-----------CCcCcCCeeee
Confidence 47888876663 4568899999999999884 322221 59999988764
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.37 E-value=0.00011 Score=53.15 Aligned_cols=50 Identities=20% Similarity=0.417 Sum_probs=35.8
Q ss_pred CCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
+...+|.||.+.+..+.+-+ .|+|.|...||.++ ++.... . .||.||...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kW-l~~~~~-~---------~CP~Cr~~w 62 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKY-FQSNAE-P---------RCPHCNDYW 62 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHH-STTCSS-C---------CCTTTCSCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHH-HHhcCC-C---------CCCCCcCcC
Confidence 35678999999998333222 89999999999994 333321 1 599999764
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.02 E-value=0.00022 Score=65.80 Aligned_cols=63 Identities=24% Similarity=0.388 Sum_probs=39.8
Q ss_pred CCcccccccccccccCCCCcEE----ecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 41 EESLECPICWESFNMVENVPYV----LWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~----L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
++..+|+||++.+......|.. ..|||.|...||.+ |-.....+...=...+-.||.||+.+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~k--WLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEE--WFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHH--HHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHH--HHHhCCCccccccccCCCCCCCCCcCC
Confidence 4678999999998853334533 37999999999999 532211100000111236999998764
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.86 E-value=0.00051 Score=47.47 Aligned_cols=49 Identities=22% Similarity=0.570 Sum_probs=35.7
Q ss_pred CCcccccccccccccCCCCcEEecCCC-----hhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGH-----TLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgH-----tFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
++...|.||++... +|.++||.+ .|...|+.+ |...+.. ..||+|+..+
T Consensus 4 ~~~~~CrIC~~~~~----~~l~~PC~C~gs~~~~H~~Cl~~--W~~~~~~---------~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELG----NERFRACGCTGELENVHRSCLST--WLTISRN---------TACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECS----CCCCCSCCCSSGGGSCCHHHHHH--HHHHHTC---------SBCTTTCCBC
T ss_pred CCCCEeEEeecCCC----CceecCcCCCCchhhhHHHHHHH--HHHhCCC---------CccCCCCCee
Confidence 36778999998755 677788654 799999999 6443221 2699999654
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.35 E-value=0.00091 Score=50.31 Aligned_cols=32 Identities=19% Similarity=0.514 Sum_probs=27.3
Q ss_pred Ccccccccccc-cccCCCCcEE--ecCCChhhHHHHHHh
Q 036732 42 ESLECPICWES-FNMVENVPYV--LWCGHTLCKNCILGL 77 (266)
Q Consensus 42 e~l~CpICl~~-f~~~~~~P~~--L~CgHtFC~~CL~~l 77 (266)
|++.|+||.+. +. +|+. +.|+|+||..|+...
T Consensus 2 ee~~C~~C~~~~~~----~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ----DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCC----BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCC----CceEECCcCChHHhHHHCHHH
Confidence 56899999975 56 7777 799999999999974
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.30 E-value=0.06 Score=47.00 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=36.2
Q ss_pred CcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 42 ESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
....|.+|.++.. .-... .|+|.|...|+..+ +..++. ..||.|+..-
T Consensus 179 ~i~~C~iC~~iv~----~g~~C~~C~~~~H~~C~~~~-~~~~~~----------~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLI----QGQSCETCGIRMHLPCVAKY-FQSNAE----------PRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCS----SCEECSSSCCEECHHHHHHH-TTTCSS----------CBCTTTCCBC
T ss_pred CCCcCcchhhHHh----CCcccCccChHHHHHHHHHH-HHhCCC----------CCCCCCCCCC
Confidence 4678999999988 55555 49999999999995 444332 2599999653
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.06 E-value=0.048 Score=56.32 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=59.4
Q ss_pred ccCCCcccccccccccccCCCCcEEecCC-ChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCC
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCG-HTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFP 116 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~Cg-HtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 116 (266)
...-+.+.|||-.+++. +|++++-| +|+=+.+|++ |-..+. .||.=|.... ...+
T Consensus 886 ~~iP~~F~cPIs~~lM~----DPVilpsG~~TydR~~I~~--wl~~~~-----------tdP~Tr~~L~-------~~~l 941 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMK----DPVILPASKMNIDRSTIKA--HLLSDS-----------TDPFNRMPLK-------LEDV 941 (968)
T ss_dssp CCSCGGGBCTTTCSBCS----SEEECTTTCCEEEHHHHHH--HHTTCC-----------BCTTTCCBCC-------GGGC
T ss_pred cCCcHHhCCcchhhHHh----CCeEcCCCCEEECHHHHHH--HHhcCC-----------CCCCCCCCCC-------cccc
Confidence 34457899999999999 99999998 6999999999 543321 5999987765 3678
Q ss_pred cchHHHHHHHHHHhcccC
Q 036732 117 RKNYFLLWMVESMNGDRV 134 (266)
Q Consensus 117 ~~N~~l~~~ve~~~~~~~ 134 (266)
.+|..++..++.+..++.
T Consensus 942 iPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 942 TPNEELRQKILCFKKQKK 959 (968)
T ss_dssp EECHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 899999999998876554
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.21 E-value=0.44 Score=35.71 Aligned_cols=50 Identities=28% Similarity=0.525 Sum_probs=36.1
Q ss_pred ccCCCcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccc
Q 036732 38 VSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSF 105 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~ 105 (266)
...-.-+.|.-||...+ . .+.-..|-+|.+|+..+ ....+ .||+|++.+.
T Consensus 23 ~s~~G~~nCKsCWf~~k----~-LV~C~dHYLCl~CLtlm-L~~Sd------------rCpIC~~pLP 72 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENK----G-LVECNNHYLCLNCLTLL-LSVSN------------RCPICKMPLP 72 (99)
T ss_dssp CCCSCCCCCCSSCSCCS----S-EEECSSCEEEHHHHHHT-CSSSS------------EETTTTEECC
T ss_pred ccccCcccChhhccccC----C-eeeecchhhHHHHHHHH-Hhhcc------------CCcccCCcCC
Confidence 44557789999998665 2 23345799999999987 43332 5999998764
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.90 E-value=0.61 Score=43.22 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=49.5
Q ss_pred ccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCC
Q 036732 38 VSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFP 116 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 116 (266)
....-.|.||+-...+. .|+.- .|.|.-|-+-..=++...+. ..+.||+|.+... ..++
T Consensus 244 ~s~~vSL~CPlS~~ri~----~PvRg~~C~HlQCFDl~sfL~~~~~~---------~~W~CPIC~k~~~-------~~dL 303 (371)
T 3i2d_A 244 TSTIMSLQCPISYTRMK----YPSKSINCKHLQCFDALWFLHSQLQI---------PTWQCPVCQIDIA-------LENL 303 (371)
T ss_dssp CEEEEESBCTTTSSBCS----SEEEETTCCSSCCEEHHHHHHHHHHS---------CCCBCTTTCCBCC-------GGGE
T ss_pred eeeEEeecCCCcccccc----ccCcCCcCCCcceECHHHHHHHhhcC---------CceeCCCCCcccC-------HHHe
Confidence 34456799999999999 99886 79998555432222122222 1358999997765 4778
Q ss_pred cchHHHHHHHHHH
Q 036732 117 RKNYFLLWMVESM 129 (266)
Q Consensus 117 ~~N~~l~~~ve~~ 129 (266)
..+..+.++++..
T Consensus 304 ~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 304 AISEFVDDILQNC 316 (371)
T ss_dssp EEBHHHHHHHTTS
T ss_pred eEcHHHHHHHHhc
Confidence 8888888887654
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=75.94 E-value=1.4 Score=40.63 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=49.4
Q ss_pred ccCCCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccccccceecCCCCCC
Q 036732 38 VSREESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRVVYKGNLKFP 116 (266)
Q Consensus 38 ~~lee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 116 (266)
....-.|.||+-...+. .|+.- .|.|.-|-+-..=++...+.. .+.||+|.+... ..++
T Consensus 210 ~~~~vSL~CPlS~~ri~----~P~Rg~~C~HlqCFDl~sfL~~~~~~~---------~W~CPiC~k~~~-------~~dL 269 (360)
T 4fo9_A 210 TSLRVSLMCPLGKMRLT----IPCRAVTCTHLQCFDAALYLQMNEKKP---------TWICPVCDKKAA-------YESL 269 (360)
T ss_dssp CCEEEESBCTTTCSBCS----SEEEETTCCCCCCEEHHHHHHHHHHSC---------CCBCTTTCSBCC-------GGGE
T ss_pred eeeEEeeeCCCccceec----cCCcCCCCCCCccCCHHHHHHHHhhCC---------CeECCCCCcccC-------HHHe
Confidence 34455889999999999 99886 899985554332221222221 358999998765 4678
Q ss_pred cchHHHHHHHHHH
Q 036732 117 RKNYFLLWMVESM 129 (266)
Q Consensus 117 ~~N~~l~~~ve~~ 129 (266)
..+..+.++++..
T Consensus 270 ~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 270 ILDGLFMEILNDC 282 (360)
T ss_dssp EEBHHHHHHHTTC
T ss_pred EEcHHHHHHHHhC
Confidence 8888888877643
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=71.13 E-value=3.2 Score=30.19 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=27.4
Q ss_pred CCcccccccccccccCCCCcEEecC----CChhhHHHHHHhhh
Q 036732 41 EESLECPICWESFNMVENVPYVLWC----GHTLCKNCILGLQW 79 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~C----gHtFC~~CL~~l~~ 79 (266)
...+.|.+|.+.++ +--...| +|-||-.|-+....
T Consensus 13 ~a~l~CtlC~erLE----dtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLE----DTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCS----STTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhc----cCceeeCCCccCCeeeccccHHHHH
Confidence 46899999999998 3334555 89999999988733
No 79
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=61.78 E-value=1.9 Score=26.10 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=11.7
Q ss_pred Ccccccccccccc
Q 036732 42 ESLECPICWESFN 54 (266)
Q Consensus 42 e~l~CpICl~~f~ 54 (266)
|++.||+|+..+.
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 6799999999887
No 80
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=58.97 E-value=4.3 Score=28.39 Aligned_cols=35 Identities=23% Similarity=0.520 Sum_probs=24.7
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
++-.|.+|...|..-.+.=---.||..||..|...
T Consensus 10 ~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cCCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 34589999998874333222238999999999754
No 81
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=58.60 E-value=6.3 Score=28.28 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=25.9
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
+...|.+|...|..-.|.=---.||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 56689999999884433322238999999999765
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=57.80 E-value=10 Score=28.03 Aligned_cols=51 Identities=25% Similarity=0.511 Sum_probs=34.3
Q ss_pred Cccccccccccccc-CCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccc
Q 036732 42 ESLECPICWESFNM-VENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLS 104 (266)
Q Consensus 42 e~l~CpICl~~f~~-~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~ 104 (266)
....|.||-+..-. ++-++.+. .|+-..|+.|.+-- .+..++ .||.|+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE-rkeG~q-----------~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE-RREGTQ-----------NCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH-HHTSCS-----------SCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH-HhccCc-----------cccccCCcc
Confidence 45789999987443 22234444 68889999999753 333332 699999654
No 83
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.61 E-value=4.2 Score=34.71 Aligned_cols=40 Identities=20% Similarity=0.455 Sum_probs=29.0
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
.....+.-.|.+|...|..-.|.----.||+.||..|...
T Consensus 158 ~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 158 APDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred ccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3455567799999998884433332348999999999865
No 84
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=52.61 E-value=5.1 Score=29.21 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=25.6
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
+...|.+|...|..-.+.=---.||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 45679999998874333322338999999999865
No 85
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=51.76 E-value=5.7 Score=28.39 Aligned_cols=35 Identities=26% Similarity=0.636 Sum_probs=25.4
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
+...|.+|...|....+.=---.||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 45679999998884333222238999999999865
No 86
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.36 E-value=6.3 Score=33.25 Aligned_cols=40 Identities=18% Similarity=0.445 Sum_probs=28.6
Q ss_pred cccCCCcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 37 VVSREESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 37 ~~~lee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
.....+...|.+|...|..-.|.=---.||+.||..|...
T Consensus 155 ~~~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 155 APNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred cccCCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3445567899999998874333222238999999999865
No 87
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=50.80 E-value=5.3 Score=29.09 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=25.7
Q ss_pred CCcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 41 EESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
++...|.+|...|..-.+.=---.||..||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 356689999998874332222238999999999865
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=49.96 E-value=5.8 Score=30.77 Aligned_cols=35 Identities=23% Similarity=0.544 Sum_probs=25.1
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
+...|.+|...|..-.+.=---.||+.||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34689999998874333222238999999999765
No 89
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.04 E-value=7.5 Score=27.81 Aligned_cols=35 Identities=20% Similarity=0.496 Sum_probs=25.1
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
+...|.+|...|..-.|.=---.||..||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 45689999998874333222238999999999754
No 90
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.94 E-value=13 Score=30.03 Aligned_cols=50 Identities=20% Similarity=0.423 Sum_probs=36.1
Q ss_pred CcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 42 ESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
+.-.|.+|...|.-..+...+. .|.|.+|..|-.. .... ..+.|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~~~---------~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HPEE---------QGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CSSS---------SSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccc---cCCC---------CcEeeHHHHHH
Confidence 5779999999886655566665 7999999999732 2221 23579999854
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=41.23 E-value=36 Score=26.99 Aligned_cols=30 Identities=33% Similarity=0.742 Sum_probs=22.1
Q ss_pred CcccccccccccccCCCCcEEe--cCCChhhHHHHHHh
Q 036732 42 ESLECPICWESFNMVENVPYVL--WCGHTLCKNCILGL 77 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~~l 77 (266)
.+..|.+|.+-=. .+. .|-..||..||...
T Consensus 62 ~~d~C~vC~~GG~------LlcCD~Cpr~Fh~~Cl~p~ 93 (142)
T 2lbm_A 62 MDEQCRWCAEGGN------LICCDFCHNAFCKKCILRN 93 (142)
T ss_dssp CBCSCSSSCCCSS------EEECSSSCCEEEHHHHHHH
T ss_pred CCCeecccCCCCc------EEeCCCCCCeeeHhhcCCC
Confidence 4567999987433 222 78999999999864
No 92
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.67 E-value=8.4 Score=29.85 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=24.7
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
+...|..|...|..-.|.----.||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 45689999998874333333348999999999765
No 93
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=37.02 E-value=14 Score=29.08 Aligned_cols=54 Identities=19% Similarity=0.379 Sum_probs=35.0
Q ss_pred CCcccccccccccccCCCCcEEe-cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 41 EESLECPICWESFNMVENVPYVL-WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L-~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
.+.-.|.+|...|.-..+..... .|.|.+|..|-... ..+ +....+.|-+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~~~------~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---SNN------RPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---CCS------SSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc---CCC------CCccceechhhHHH
Confidence 35678999999884333344444 79999999996542 110 01124679999854
No 94
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.92 E-value=7.2 Score=35.81 Aligned_cols=35 Identities=23% Similarity=0.522 Sum_probs=0.0
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHH
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILG 76 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~ 76 (266)
+...|..|...|....+.-.--.||+.||..|...
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp -----------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCC
Confidence 45689999998874333333348999999999865
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=32.41 E-value=30 Score=24.96 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=32.7
Q ss_pred cCCCcccccccccccccCCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
..++...|.||.+.-.... +.+++ .|.-.|...|+... . . | .+.+.||.|...
T Consensus 21 ~~~~~~~C~vC~~~~s~~~-~~ll~CD~C~~~fH~~Cl~p~--~---v---P---~g~W~C~~C~~~ 75 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVP--Y---I---P---EGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSE-EEEEECSSSCCCCCHHHHTCS--S---C---C---SSCCCCHHHHHH
T ss_pred cCCCCCcCCcCCCCCCCCC-CCEEECCCCCchhhcccCCCC--c---c---C---CCceECccccCc
Confidence 3456789999997531011 22333 68888999998652 1 1 1 134679999854
No 96
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.16 E-value=17 Score=23.08 Aligned_cols=46 Identities=22% Similarity=0.448 Sum_probs=25.7
Q ss_pred cccccccccccCCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccc
Q 036732 45 ECPICWESFNMVENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNL 102 (266)
Q Consensus 45 ~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~ 102 (266)
.|.||.+.-. ...+++ .|...|...|+..- .... | .+...||.|+.
T Consensus 2 ~C~vC~~~~~---~~~ll~Cd~C~~~~H~~Cl~p~-l~~~-----P---~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE---DDKLILCDECNKAFHLFCLRPA-LYEV-----P---DGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC---CSCCEECTTTCCEECHHHHCTT-CCSC-----C---SSCCSCTTTSC
T ss_pred CCCCCCCCCC---CCCEEECCCCChhhCcccCCCC-cCCC-----C---CCcEECcCccc
Confidence 3677765422 022233 67778889998642 1111 1 12467999975
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=30.57 E-value=20 Score=26.35 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=27.3
Q ss_pred CcccccccccccccCCCCcEEe---cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccc
Q 036732 42 ESLECPICWESFNMVENVPYVL---WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNL 102 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L---~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~ 102 (266)
+...| ||..... .-.++ .|..-|...|+... .. ..+..+.||.|+.
T Consensus 27 d~vrC-iC~~~~~----~~~mi~Cd~C~~w~H~~C~~~~-~~---------~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHD----DGYMICCDKCSVWQHIDCMGID-RQ---------HIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSC----SSCEEEBTTTCBEEETTTTTCC-TT---------SCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccC----CCcEEEcCCCCCcCcCcCCCCC-cc---------CCCCCEECCCCcC
Confidence 45677 8987655 33344 56667777776431 11 1122468999973
No 98
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=30.20 E-value=15 Score=26.21 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=21.6
Q ss_pred ccccccccccc-CCCCcEEec-CCChhhHHHHHH
Q 036732 45 ECPICWESFNM-VENVPYVLW-CGHTLCKNCILG 76 (266)
Q Consensus 45 ~CpICl~~f~~-~~~~P~~L~-CgHtFC~~CL~~ 76 (266)
-||-|...+.. ....++.-+ |++.||..|-..
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~ 60 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQ 60 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSB
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCc
Confidence 38877764432 222445665 999999999876
No 99
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=29.71 E-value=43 Score=29.13 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=8.0
Q ss_pred HHHHHhhHhhhhhh
Q 036732 245 TILFALPSFLILYF 258 (266)
Q Consensus 245 ~~~~~~~~~~~~~~ 258 (266)
-+++|+||+-+||-
T Consensus 87 Li~la~pS~~~ly~ 100 (262)
T 2gsm_B 87 LVAIGAFSLPVLFN 100 (262)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666666664
No 100
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=28.66 E-value=42 Score=22.28 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=30.0
Q ss_pred CCcccccccccccccCCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccc
Q 036732 41 EESLECPICWESFNMVENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNL 102 (266)
Q Consensus 41 ee~l~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~ 102 (266)
.+...|.+|.+. .-+++ .|...|...|+... .... | .+...||.|+.
T Consensus 9 ~~~~~C~vC~~~------g~ll~CD~C~~~fH~~Cl~p~-l~~~-----p---~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG------GEIILCDTCPRAYHMVCLDPD-MEKA-----P---EGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC------SSEEECSSSSCEEEHHHHCTT-CCSC-----C---CSSCCCTTGGG
T ss_pred CCCCCCccCCCC------CcEEECCCCChhhhhhccCCC-CCCC-----C---CCceECccccc
Confidence 356789999873 22333 68889999999762 1111 1 13467999974
No 101
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.90 E-value=6.5 Score=28.82 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=31.0
Q ss_pred cCCCcccccccccccccCCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccc
Q 036732 39 SREESLECPICWESFNMVENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNL 102 (266)
Q Consensus 39 ~lee~l~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~ 102 (266)
...+...|.||.+.-.. ..+++ .|...|...|+... .... | .+...||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~---~~ll~CD~C~~~~H~~Cl~Pp-l~~~-----P---~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDED---DKLLFCDGCDDNYHIFCLLPP-LPEI-----P---RGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGG---GGCEECTTTCCEECSSSSSSC-CSSC-----C---SSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCC---CCEEEcCCCCchhccccCCCC-cccC-----C---CCCcCCccCcC
Confidence 34466789999875430 22333 68888888888642 1111 1 12467999974
No 102
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=25.92 E-value=37 Score=23.11 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=29.6
Q ss_pred CcccccccccccccCCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 42 ESLECPICWESFNMVENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
..-.|.||.+-= + +++ .|...|...|+... ..... .+.+.||.|+..
T Consensus 11 ~~~~C~vC~~~~-----~-ll~Cd~C~~~~H~~Cl~P~-l~~~P--------~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGT-----D-VLRCTHCAAAFHWRCHFPA-GTSRP--------GTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCT-----T-CEECSSSCCEECHHHHCTT-TCCCC--------SSSCCCTTTTTC
T ss_pred CCCCcCCCCCCC-----e-EEECCCCCCceecccCCCc-cCcCC--------CCCEECccccCC
Confidence 455699998631 2 233 79999999999753 21111 123679999753
No 103
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=25.90 E-value=43 Score=23.14 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=32.8
Q ss_pred CCCcccccccccccccCCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 40 REESLECPICWESFNMVENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 40 lee~l~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
..+...|.||.+.-...+ +.+++ .|.-.|...|+... . . | .+.+.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~-~~ll~CD~C~~~~H~~Cl~~~--~---v---P---~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVP--Y---I---P---EGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSS-SCEEECSSSCCEEEHHHHTCS--S---C---C---SSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC-CCEEECCCCCCccccccCCCC--c---C---C---CCCcCCccCcCc
Confidence 346788999987532111 34444 78889999998652 1 1 1 134679999743
No 104
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=24.55 E-value=39 Score=23.15 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=30.7
Q ss_pred CcccccccccccccCCCCcEEe--cCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCcccccc
Q 036732 42 ESLECPICWESFNMVENVPYVL--WCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~ 103 (266)
+...|++|..... + ..++. .|..-|...|+... ... .+ ...+.||.|+..
T Consensus 17 ~~~~C~~C~~~~~-~--~~mi~CD~C~~wfH~~Cv~~~-~~~-------~~-~~~w~C~~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPDD-G--SPMIGCDDCDDWYHWPCVGIM-AAP-------PE-EMQWFCPKCANK 68 (75)
T ss_dssp EEECBTTTTBCCS-S--CCEEECSSSSSEEEHHHHTCS-SCC-------CS-SSCCCCTTTHHH
T ss_pred CCcCCCCCCCCCC-C--CCEEEcCCCCcccccccCCCC-ccC-------CC-CCCEEChhccCc
Confidence 5677999988754 1 23343 67778888888542 110 00 134679999854
No 105
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.86 E-value=10 Score=28.40 Aligned_cols=41 Identities=27% Similarity=0.548 Sum_probs=26.4
Q ss_pred ccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhccCCCCCCCCCCcccCccccccccc
Q 036732 44 LECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFR 106 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~~~~~~~~~~~~~~CP~CR~~~~~ 106 (266)
..||.|...+.- .=++..|..|-..+ .... .||.|.+++.+
T Consensus 33 ~~CP~Cq~eL~~--------~g~~~hC~~C~~~f--~~~a------------~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQ--------DNGHARCRSCGEFI--EMKA------------LCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEE--------ETTEEEETTTCCEE--EEEE------------ECTTTCSBCEE
T ss_pred ccCccCCCccee--------cCCEEECccccchh--hccc------------cCcchhhHHHH
Confidence 899999987651 11333488886653 2221 59999987653
No 106
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=23.86 E-value=8.7 Score=22.23 Aligned_cols=7 Identities=71% Similarity=1.407 Sum_probs=5.4
Q ss_pred Ccccccc
Q 036732 1 MWNFAST 7 (266)
Q Consensus 1 ~~~~~~~ 7 (266)
||||-|.
T Consensus 15 MwNfvSG 21 (30)
T 2jxf_A 15 MWNFISG 21 (30)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888864
No 107
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=23.59 E-value=2.4e+02 Score=21.75 Aligned_cols=30 Identities=33% Similarity=0.742 Sum_probs=21.4
Q ss_pred CcccccccccccccCCCCcEEe--cCCChhhHHHHHHh
Q 036732 42 ESLECPICWESFNMVENVPYVL--WCGHTLCKNCILGL 77 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L--~CgHtFC~~CL~~l 77 (266)
.+..|.+|.+-=+ .+. .|-..||..||...
T Consensus 56 ~~~~C~vC~dGG~------LlcCd~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 56 MDEQCRWCAEGGN------LICCDFCHNAFCKKCILRN 87 (129)
T ss_dssp CBSSCTTTCCCSE------EEECSSSSCEEEHHHHHHH
T ss_pred CCCcCeecCCCCe------eEecCCCchhhhHHHhCCC
Confidence 3456999987433 122 68899999999864
No 108
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=23.48 E-value=39 Score=21.53 Aligned_cols=13 Identities=15% Similarity=0.559 Sum_probs=9.6
Q ss_pred ccccccccccccc
Q 036732 43 SLECPICWESFNM 55 (266)
Q Consensus 43 ~l~CpICl~~f~~ 55 (266)
...|.+|.-+|..
T Consensus 4 ~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 4 KYVCNVCGYEYDP 16 (46)
T ss_dssp CEEETTTCCEECG
T ss_pred EEECCCCCeEEeC
Confidence 4578888887774
No 109
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=21.39 E-value=55 Score=23.82 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=30.9
Q ss_pred CcccccccccccccCCCCcEEecCCChhhHHHHHHhhhhhcc---CCCCCCCCCCcccCcccccc
Q 036732 42 ESLECPICWESFNMVENVPYVLWCGHTLCKNCILGLQWAVVK---FPTLPVQLPLFISCPWCNLL 103 (266)
Q Consensus 42 e~l~CpICl~~f~~~~~~P~~L~CgHtFC~~CL~~l~~~~~~---~~~~~~~~~~~~~CP~CR~~ 103 (266)
.+..|.||-..-. .+-.| ---|+..|...|+++.-..... .-.+...-...++||.|...
T Consensus 14 ~D~~C~VC~~~t~-~~l~p-CRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 14 NDEMCDVCEVWTA-ESLFP-CRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CSCCCTTTCCCCS-SCCSS-CSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCcccCccccccc-cceec-cccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 5667888874322 11111 1147888889999885111110 00011112235789999754
No 110
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.16 E-value=77 Score=20.85 Aligned_cols=13 Identities=15% Similarity=0.580 Sum_probs=9.9
Q ss_pred ccccccccccccc
Q 036732 43 SLECPICWESFNM 55 (266)
Q Consensus 43 ~l~CpICl~~f~~ 55 (266)
...|.+|.-+|+.
T Consensus 3 ~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 3 KYTCTVCGYIYDP 15 (54)
T ss_dssp CEEETTTCCEECT
T ss_pred ceECCCCCeEECC
Confidence 4578888888874
No 111
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=20.60 E-value=66 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=21.0
Q ss_pred ccccccccccccCCCCcE-E-e-cCCChhhHHHHHH
Q 036732 44 LECPICWESFNMVENVPY-V-L-WCGHTLCKNCILG 76 (266)
Q Consensus 44 l~CpICl~~f~~~~~~P~-~-L-~CgHtFC~~CL~~ 76 (266)
..|--|...+. +.. . - .|++.||.+|=.=
T Consensus 16 ~~C~~C~~~~~----~~~~y~C~~C~~~FC~dCD~f 47 (59)
T 1z60_A 16 RFCYGCQGELK----DQHVYVCAVCQNVFCVDCDVF 47 (59)
T ss_dssp CEETTTTEECT----TSEEECCTTTTCCBCHHHHHT
T ss_pred CcccccCcccC----CCccEECCccCcCcccchhHH
Confidence 45888888886 332 2 2 7999999999654
Done!