Query 036733
Match_columns 96
No_of_seqs 151 out of 1035
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05513 Bromo_brd7_like Bromod 100.0 4.8E-31 1E-35 161.6 7.6 83 12-94 1-85 (98)
2 cd05505 Bromo_WSTF_like Bromod 100.0 8.6E-31 1.9E-35 160.2 7.9 81 14-94 2-84 (97)
3 cd05508 Bromo_RACK7 Bromodomai 100.0 1.1E-30 2.3E-35 160.2 7.7 82 12-94 3-86 (99)
4 cd05497 Bromo_Brdt_I_like Brom 100.0 1.6E-30 3.4E-35 161.5 7.7 83 12-94 5-91 (107)
5 cd05507 Bromo_brd8_like Bromod 100.0 1.9E-30 4.1E-35 160.4 7.9 83 12-94 3-87 (104)
6 cd05512 Bromo_brd1_like Bromod 100.0 2.8E-30 6.1E-35 158.1 8.1 83 12-94 1-85 (98)
7 cd05496 Bromo_WDR9_II Bromodom 100.0 4E-30 8.6E-35 162.3 7.7 83 12-94 5-90 (119)
8 cd05495 Bromo_cbp_like Bromodo 100.0 4.8E-30 1E-34 159.6 7.7 84 11-94 2-90 (108)
9 cd05504 Bromo_Acf1_like Bromod 100.0 1.5E-29 3.2E-34 158.9 8.1 90 5-94 5-96 (115)
10 cd05510 Bromo_SPT7_like Bromod 100.0 2.2E-29 4.8E-34 157.4 8.4 85 7-91 2-89 (112)
11 cd05503 Bromo_BAZ2A_B_like Bro 100.0 2.7E-29 6E-34 153.5 7.9 81 14-94 2-84 (97)
12 cd05509 Bromo_gcn5_like Bromod 100.0 3.4E-29 7.3E-34 153.9 7.5 83 12-94 1-85 (101)
13 cd05528 Bromo_AAA Bromodomain; 100.0 3.9E-28 8.5E-33 151.8 8.3 79 12-90 3-83 (112)
14 cd05502 Bromo_tif1_like Bromod 100.0 3.5E-28 7.7E-33 151.3 7.7 82 12-94 4-90 (109)
15 cd05506 Bromo_plant1 Bromodoma 100.0 3.8E-28 8.2E-33 148.7 7.2 81 14-94 2-86 (99)
16 cd05500 Bromo_BDF1_2_I Bromodo 99.9 5.4E-28 1.2E-32 149.1 7.8 82 13-94 5-90 (103)
17 cd05499 Bromo_BDF1_2_II Bromod 99.9 5E-28 1.1E-32 149.0 7.3 81 14-94 2-89 (102)
18 cd05511 Bromo_TFIID Bromodomai 99.9 5.2E-28 1.1E-32 151.3 7.0 81 14-94 2-84 (112)
19 KOG1474 Transcription initiati 99.9 4.2E-28 9E-33 186.9 7.3 87 9-95 219-309 (640)
20 cd05516 Bromo_SNF2L2 Bromodoma 99.9 9E-28 2E-32 149.1 7.0 82 13-94 2-91 (107)
21 cd05498 Bromo_Brdt_II_like Bro 99.9 1.2E-27 2.5E-32 147.2 7.4 81 14-94 2-89 (102)
22 cd05501 Bromo_SP100C_like Brom 99.9 3.4E-27 7.3E-32 145.2 7.6 78 14-94 4-83 (102)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 2.4E-27 5.3E-32 146.2 6.7 82 13-94 1-90 (103)
24 cd05529 Bromo_WDR9_I_like Brom 99.9 3.9E-26 8.4E-31 145.7 8.8 83 12-94 24-112 (128)
25 cd05517 Bromo_polybromo_II Bro 99.9 1.6E-26 3.5E-31 142.6 6.5 81 14-94 2-90 (103)
26 cd05515 Bromo_polybromo_V Brom 99.9 2.2E-26 4.8E-31 142.4 7.1 81 14-94 2-90 (105)
27 PF00439 Bromodomain: Bromodom 99.9 2.8E-26 6E-31 135.9 6.6 78 17-94 1-80 (84)
28 cd05525 Bromo_ASH1 Bromodomain 99.9 5.4E-26 1.2E-30 140.9 7.4 82 13-94 3-92 (106)
29 cd05524 Bromo_polybromo_I Brom 99.9 4.4E-26 9.4E-31 142.8 6.8 82 13-94 3-92 (113)
30 cd05518 Bromo_polybromo_IV Bro 99.9 4.3E-26 9.2E-31 140.8 6.5 69 26-94 20-90 (103)
31 cd05520 Bromo_polybromo_III Br 99.9 5.7E-26 1.2E-30 140.2 6.9 83 12-94 4-90 (103)
32 smart00297 BROMO bromo domain. 99.9 7.9E-26 1.7E-30 139.2 7.6 85 10-94 5-91 (107)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.9 1.7E-25 3.6E-30 138.3 6.8 82 13-94 2-91 (104)
34 cd04369 Bromodomain Bromodomai 99.9 1.4E-24 2.9E-29 130.5 6.5 81 14-94 2-86 (99)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2.4E-24 5.2E-29 133.6 6.9 80 13-94 2-89 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.9 3.3E-24 7.1E-29 133.4 6.5 80 15-94 3-90 (109)
37 KOG1245 Chromatin remodeling c 99.8 5.4E-20 1.2E-24 150.3 5.6 75 17-92 1306-1382(1404)
38 cd05526 Bromo_polybromo_VI Bro 99.8 2.8E-19 6.1E-24 111.2 6.4 81 12-94 3-91 (110)
39 COG5076 Transcription factor i 99.8 9.1E-19 2E-23 128.1 5.9 83 12-94 142-232 (371)
40 KOG1472 Histone acetyltransfer 99.7 5.2E-17 1.1E-21 125.7 6.9 85 10-94 604-690 (720)
41 cd05494 Bromodomain_1 Bromodom 99.5 6.5E-15 1.4E-19 92.3 4.3 54 14-67 5-60 (114)
42 KOG0955 PHD finger protein BR1 99.5 3.2E-14 7E-19 114.0 5.8 85 9-93 562-648 (1051)
43 cd05491 Bromo_TBP7_like Bromod 99.4 7.7E-14 1.7E-18 87.5 3.4 42 51-92 63-106 (119)
44 KOG0008 Transcription initiati 99.4 3.4E-13 7.4E-18 109.2 4.1 79 15-93 1385-1465(1563)
45 KOG1827 Chromatin remodeling c 99.2 2.7E-11 5.8E-16 93.2 5.9 89 6-94 46-142 (629)
46 KOG1472 Histone acetyltransfer 99.1 8.7E-11 1.9E-15 91.6 5.4 67 26-92 300-368 (720)
47 KOG0008 Transcription initiati 99.0 2.2E-10 4.7E-15 93.4 4.3 80 13-92 1262-1343(1563)
48 KOG0386 Chromatin remodeling c 99.0 5.1E-10 1.1E-14 89.5 5.9 79 15-93 1027-1113(1157)
49 KOG1828 IRF-2-binding protein 98.9 1.1E-09 2.4E-14 80.1 2.0 82 12-93 19-102 (418)
50 KOG1828 IRF-2-binding protein 98.6 1.2E-08 2.6E-13 74.8 1.0 84 9-93 205-290 (418)
51 KOG1474 Transcription initiati 98.6 1.8E-08 3.9E-13 78.6 1.8 71 23-93 3-77 (640)
52 cd05493 Bromo_ALL-1 Bromodomai 97.4 0.00019 4.1E-09 46.0 3.3 32 52-83 59-91 (131)
53 COG5076 Transcription factor i 97.2 6.4E-05 1.4E-09 55.3 -0.6 73 21-93 272-346 (371)
54 KOG0644 Uncharacterized conser 93.3 0.05 1.1E-06 44.3 1.8 42 49-90 1050-1093(1113)
55 KOG0732 AAA+-type ATPase conta 92.0 0.13 2.8E-06 42.9 2.6 61 29-89 532-601 (1080)
56 KOG0644 Uncharacterized conser 88.8 0.049 1.1E-06 44.4 -2.2 63 33-95 86-180 (1113)
57 TIGR02606 antidote_CC2985 puta 84.7 1.3 2.8E-05 25.2 2.7 24 56-79 12-35 (69)
58 PF03693 RHH_2: Uncharacterise 82.6 1.5 3.3E-05 25.6 2.5 22 56-77 15-36 (80)
59 KOG1827 Chromatin remodeling c 62.7 0.87 1.9E-05 36.2 -2.5 62 31-92 214-277 (629)
60 COG3609 Predicted transcriptio 56.1 20 0.00042 21.2 3.1 24 55-78 14-37 (89)
61 KOG4086 Transcriptional regula 48.4 7.9 0.00017 24.6 0.6 18 42-59 59-76 (130)
62 KOG0732 AAA+-type ATPase conta 44.3 5.1 0.00011 33.9 -0.9 48 42-89 798-849 (1080)
63 PF07882 Fucose_iso_N2: L-fuco 42.2 5.7 0.00012 26.9 -0.8 51 38-89 19-71 (181)
64 PF10742 DUF2555: Protein of u 36.1 63 0.0014 17.8 2.8 35 54-88 13-47 (57)
65 smart00224 GGL G protein gamma 35.8 79 0.0017 17.4 3.9 34 8-41 17-50 (63)
66 PF14056 DUF4250: Domain of un 34.1 65 0.0014 17.5 2.7 24 54-78 8-31 (55)
67 PF12411 Choline_sulf_C: Choli 32.5 86 0.0019 17.0 3.0 31 26-61 21-51 (54)
68 PHA02888 hypothetical protein; 32.4 46 0.00099 19.6 2.0 15 48-62 55-69 (96)
69 PF09590 Env-gp36: Lentivirus 30.7 66 0.0014 25.6 3.2 37 28-66 33-70 (591)
70 PHA02891 hypothetical protein; 30.1 1.4E+02 0.003 18.4 4.2 37 53-89 1-38 (120)
71 PRK10991 fucI L-fucose isomera 29.3 37 0.0008 27.1 1.7 49 35-84 188-238 (588)
72 PF04316 FlgM: Anti-sigma-28 f 25.1 58 0.0013 17.4 1.6 14 55-68 30-43 (57)
73 PF14579 HHH_6: Helix-hairpin- 24.4 1E+02 0.0022 17.8 2.7 20 57-77 43-62 (90)
74 PF14225 MOR2-PAG1_C: Cell mor 24.3 1.1E+02 0.0023 21.8 3.2 26 53-78 149-174 (262)
75 cd08767 Cdt1_c The C-terminal 23.0 59 0.0013 20.4 1.5 19 44-63 108-126 (126)
76 PF13358 DDE_3: DDE superfamil 22.6 97 0.0021 18.5 2.4 20 54-73 126-145 (146)
77 PTZ00398 phosphoenolpyruvate c 21.6 1.6E+02 0.0036 25.1 4.1 22 66-87 422-444 (974)
78 PRK00009 phosphoenolpyruvate c 21.3 1.1E+02 0.0023 26.0 3.0 23 66-88 359-382 (911)
79 KOG4119 G protein gamma subuni 21.1 1.6E+02 0.0035 16.9 2.9 34 10-43 27-60 (71)
No 1
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=4.8e-31 Score=161.55 Aligned_cols=83 Identities=34% Similarity=0.530 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
|++++|..+++.|++++.+++|..||+.+.+|||+++|++||||+||++||+++.|.|+++|.+|++|| ||+.||+++
T Consensus 1 ~l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred CHHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 688999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
|.++.
T Consensus 81 s~~~~ 85 (98)
T cd05513 81 TIYYK 85 (98)
T ss_pred CHHHH
Confidence 99874
No 2
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=8.6e-31 Score=160.17 Aligned_cols=81 Identities=32% Similarity=0.429 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCc
Q 036733 14 KRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGIL 91 (96)
Q Consensus 14 ~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~ 91 (96)
.+.|..||+.|++++.+++|..||+...+|||+++|++||||+||++||++|.|.|+++|.+|++|| ||+.||++||.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999 99999999998
Q ss_pred eee
Q 036733 92 FLS 94 (96)
Q Consensus 92 ~~~ 94 (96)
++.
T Consensus 82 i~~ 84 (97)
T cd05505 82 VLS 84 (97)
T ss_pred HHH
Confidence 764
No 3
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.1e-30 Score=160.23 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
.+..+|+.+++.++ ++.+++|..||++..+|||+++|++||||+||++||++|.|+|+++|.+|++|| ||+.||+++
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 47889999999999 999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
|.++.
T Consensus 82 s~i~~ 86 (99)
T cd05508 82 HKLTQ 86 (99)
T ss_pred CHHHH
Confidence 98864
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.6e-30 Score=161.49 Aligned_cols=83 Identities=27% Similarity=0.368 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCcc--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTK--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWS 87 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~ 87 (96)
.++-+++.+|+.|++++.+++|..||++. .+||||++|++||||+||++||++|.|.|+++|.+|++|| ||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35677889999999999999999999987 5999999999999999999999999999999999999999 9999999
Q ss_pred CCCceee
Q 036733 88 IGILFLS 94 (96)
Q Consensus 88 ~~s~~~~ 94 (96)
++|.++.
T Consensus 85 ~~s~i~~ 91 (107)
T cd05497 85 PGDDVVL 91 (107)
T ss_pred CCCHHHH
Confidence 9999874
No 5
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.9e-30 Score=160.41 Aligned_cols=83 Identities=18% Similarity=0.311 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
.+++.|..+++.|.+++.+++|.+||+.+.+|+|+++|++||||+||++||++|.|+|++||.+|++|| ||..||+++
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 82 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSD 82 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
|.++.
T Consensus 83 s~v~~ 87 (104)
T cd05507 83 HDVYL 87 (104)
T ss_pred CHHHH
Confidence 98874
No 6
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=2.8e-30 Score=158.15 Aligned_cols=83 Identities=46% Similarity=0.698 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
|+...|+.+++.|.+++.+++|.+||+...+|||+++|++||||+||++||+++.|.|+++|.+|++|| ||+.||+++
T Consensus 1 p~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 1 PLEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred CHHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
|.++.
T Consensus 81 s~~~~ 85 (98)
T cd05512 81 TIFYR 85 (98)
T ss_pred CHHHH
Confidence 99874
No 7
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=4e-30 Score=162.25 Aligned_cols=83 Identities=25% Similarity=0.355 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCC-
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSI- 88 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~- 88 (96)
.+++.|..|++.|++++.+++|..||++..+|||+++|++||||+||++||++|.|.++++|.+|++|| ||+.||++
T Consensus 5 ~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~ 84 (119)
T cd05496 5 DWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNK 84 (119)
T ss_pred HHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999 99999985
Q ss_pred CCceee
Q 036733 89 GILFLS 94 (96)
Q Consensus 89 ~s~~~~ 94 (96)
+|.++.
T Consensus 85 ~s~i~~ 90 (119)
T cd05496 85 RSRIYS 90 (119)
T ss_pred CCHHHH
Confidence 888764
No 8
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=4.8e-30 Score=159.57 Aligned_cols=84 Identities=26% Similarity=0.391 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHHhcC-CCCccCcCCCCcc--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhh
Q 036733 11 MPEKRVLELILNILQRK-DTNEIFAEPVDTK--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKF 85 (96)
Q Consensus 11 ~~~~~~~~~il~~l~~~-~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~y 85 (96)
..+.+.|..+++.|.++ +.+++|..||+++ .+||||++|++||||+||++||++|.|.|+++|.+|++|| ||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999 9999999999987 5999999999999999999999999999999999999999 99999
Q ss_pred cCCCCceee
Q 036733 86 WSIGILFLS 94 (96)
Q Consensus 86 N~~~s~~~~ 94 (96)
|+++|.++.
T Consensus 82 N~~~s~i~~ 90 (108)
T cd05495 82 NRKTSRVYK 90 (108)
T ss_pred CCCCCHHHH
Confidence 999998874
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.5e-29 Score=158.93 Aligned_cols=90 Identities=29% Similarity=0.398 Sum_probs=83.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hh
Q 036733 5 VPSAPQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LC 82 (96)
Q Consensus 5 ~~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~ 82 (96)
+.+.......+.|..||+.|.+++.+++|..||+...+||||++|++||||+||++||++|.|.|+++|.+|++|| ||
T Consensus 5 ~~~~~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na 84 (115)
T cd05504 5 EGRHHGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNC 84 (115)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 3444555678999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhcCCCCceee
Q 036733 83 LKFWSIGILFLS 94 (96)
Q Consensus 83 ~~yN~~~s~~~~ 94 (96)
+.||+++|.++.
T Consensus 85 ~~yN~~~s~i~~ 96 (115)
T cd05504 85 FLYNPEHTSVYK 96 (115)
T ss_pred HHHCCCCCHHHH
Confidence 999999999874
No 10
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.2e-29 Score=157.42 Aligned_cols=85 Identities=33% Similarity=0.396 Sum_probs=80.5
Q ss_pred CCCCChHHHHHHHHHHHHhcC-CCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhh
Q 036733 7 SAPQMPEKRVLELILNILQRK-DTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCL 83 (96)
Q Consensus 7 ~~~~~~~~~~~~~il~~l~~~-~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~ 83 (96)
+.++.++.+.|..|++.|.++ +.+++|..||+++.+|||+++|++||||+||++||++|.|+|+++|.+|++|| ||+
T Consensus 2 ~~~~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~ 81 (112)
T cd05510 2 RIGQEEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCL 81 (112)
T ss_pred cccHHHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 456678999999999999999 89999999999999999999999999999999999999999999999999999 999
Q ss_pred hhcCCCCc
Q 036733 84 KFWSIGIL 91 (96)
Q Consensus 84 ~yN~~~s~ 91 (96)
.||+++|.
T Consensus 82 ~yN~~~s~ 89 (112)
T cd05510 82 LYNSDPSH 89 (112)
T ss_pred HHCCCCCH
Confidence 99998763
No 11
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.7e-29 Score=153.46 Aligned_cols=81 Identities=36% Similarity=0.485 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCc
Q 036733 14 KRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGIL 91 (96)
Q Consensus 14 ~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~ 91 (96)
.+.|..|++.|.+++.+++|..||+++.+|+|+++|++||||+||++||++|.|+|+++|.+|++|| ||+.||+++|.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999 99999999998
Q ss_pred eee
Q 036733 92 FLS 94 (96)
Q Consensus 92 ~~~ 94 (96)
++.
T Consensus 82 i~~ 84 (97)
T cd05503 82 VGR 84 (97)
T ss_pred HHH
Confidence 864
No 12
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=3.4e-29 Score=153.85 Aligned_cols=83 Identities=34% Similarity=0.563 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
|+.+.|..+++.|.+++.+++|..||++..+|+|+++|++||||+||++||++|.|.|+++|.+|+++| ||+.||+++
T Consensus 1 ~~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 1 PLYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred ChHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
|.++.
T Consensus 81 s~~~~ 85 (101)
T cd05509 81 TEYYK 85 (101)
T ss_pred CHHHH
Confidence 98864
No 13
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.95 E-value=3.9e-28 Score=151.81 Aligned_cols=79 Identities=32% Similarity=0.415 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
.++.+|..+++.|++++.+++|.+||+++.+|||+++|++||||+||++||+++.|.|+++|.+|++|| ||+.||+++
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 367789999999999999999999999999999999999999999999999999999999999999999 999999997
Q ss_pred C
Q 036733 90 I 90 (96)
Q Consensus 90 s 90 (96)
|
T Consensus 83 s 83 (112)
T cd05528 83 D 83 (112)
T ss_pred C
Confidence 5
No 14
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.5e-28 Score=151.28 Aligned_cols=82 Identities=33% Similarity=0.443 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHhh--hhhhhc
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHE---GMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~---~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
..++.|..|+..|.+++.+++|.+||++ .+|+|+++|++||||+||++||++ |.|.++++|.+|++|| ||+.||
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999999 899999999999999999999999 5999999999999999 999999
Q ss_pred CCCCceee
Q 036733 87 SIGILFLS 94 (96)
Q Consensus 87 ~~~s~~~~ 94 (96)
+++|.++.
T Consensus 83 ~~~s~i~~ 90 (109)
T cd05502 83 EEDSEVAQ 90 (109)
T ss_pred CCCCHHHH
Confidence 99998864
No 15
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.8e-28 Score=148.65 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcCCCCccCcCCCCcc--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 14 KRVLELILNILQRKDTNEIFAEPVDTK--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 14 ~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
.+.|..||+.|++++.+++|..||++. .+|+|+++|++||||+||++||+++.|.|+++|.+|+++| ||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999976 5899999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
|.++.
T Consensus 82 s~i~~ 86 (99)
T cd05506 82 NDVHT 86 (99)
T ss_pred CHHHH
Confidence 99874
No 16
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=5.4e-28 Score=149.13 Aligned_cols=82 Identities=32% Similarity=0.466 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCCCCccCcCCCCcc--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCC
Q 036733 13 EKRVLELILNILQRKDTNEIFAEPVDTK--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSI 88 (96)
Q Consensus 13 ~~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~ 88 (96)
..+.|..+++.|.+++.+++|..||+++ .+|||+++|++||||++|++||++|.|.|+++|.+|+++| ||+.||++
T Consensus 5 ~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 84 (103)
T cd05500 5 QHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGP 84 (103)
T ss_pred HHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4688999999999999999999999976 5999999999999999999999999999999999999999 99999999
Q ss_pred CCceee
Q 036733 89 GILFLS 94 (96)
Q Consensus 89 ~s~~~~ 94 (96)
+|.++.
T Consensus 85 ~s~~~~ 90 (103)
T cd05500 85 EHPVSQ 90 (103)
T ss_pred CCHHHH
Confidence 998874
No 17
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=5e-28 Score=148.96 Aligned_cols=81 Identities=33% Similarity=0.530 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhc---CCCCccCcCCCCcc--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhc
Q 036733 14 KRVLELILNILQR---KDTNEIFAEPVDTK--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 14 ~~~~~~il~~l~~---~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
.+.|..||+.|.+ ++.+++|..||+++ .+|||+++|++||||++|++||+++.|.|+++|.+|+++| ||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4689999999998 46789999999998 8999999999999999999999999999999999999999 999999
Q ss_pred CCCCceee
Q 036733 87 SIGILFLS 94 (96)
Q Consensus 87 ~~~s~~~~ 94 (96)
+++|.++.
T Consensus 82 ~~~s~~~~ 89 (102)
T cd05499 82 PEGTDVYM 89 (102)
T ss_pred CCCCHHHH
Confidence 99998874
No 18
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=5.2e-28 Score=151.26 Aligned_cols=81 Identities=31% Similarity=0.440 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCc
Q 036733 14 KRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGIL 91 (96)
Q Consensus 14 ~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~ 91 (96)
.-.++.|++.|++++.+++|..||++..+|+||++|++||||++|++||+++.|+|+++|.+|++|| ||..||+++|.
T Consensus 2 ~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 2 SFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999 99999999998
Q ss_pred eee
Q 036733 92 FLS 94 (96)
Q Consensus 92 ~~~ 94 (96)
++.
T Consensus 82 i~~ 84 (112)
T cd05511 82 YTK 84 (112)
T ss_pred HHH
Confidence 763
No 19
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.95 E-value=4.2e-28 Score=186.88 Aligned_cols=87 Identities=32% Similarity=0.481 Sum_probs=82.3
Q ss_pred CCChHHHHHHHHHHHHhcCCCCccCcCCCCccc--cccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhh
Q 036733 9 PQMPEKRVLELILNILQRKDTNEIFAEPVDTKE--VEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLK 84 (96)
Q Consensus 9 ~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~ 84 (96)
....+.+.|..||..|++|..+|+|..|||+.. +|||++||++||||+||++||+++.|.++.||.+||||| ||++
T Consensus 219 ~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~ 298 (640)
T KOG1474|consen 219 LTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMT 298 (640)
T ss_pred ccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHh
Confidence 334577889999999999999999999999986 899999999999999999999999999999999999999 9999
Q ss_pred hcCCCCceeec
Q 036733 85 FWSIGILFLSI 95 (96)
Q Consensus 85 yN~~~s~~~~~ 95 (96)
||.+|+++|.|
T Consensus 299 YNp~g~dV~~M 309 (640)
T KOG1474|consen 299 YNPEGSDVYAM 309 (640)
T ss_pred cCCCCCHHHHH
Confidence 99999999976
No 20
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=9e-28 Score=149.10 Aligned_cols=82 Identities=24% Similarity=0.478 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhcCCC------CccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhh
Q 036733 13 EKRVLELILNILQRKDT------NEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLK 84 (96)
Q Consensus 13 ~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~ 84 (96)
+.+.|..|++.+.++.. +++|.+||+...+||||++|++||||++|++||++|.|.|+++|.+|++|| ||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 67889999999998876 799999999999999999999999999999999999999999999999999 9999
Q ss_pred hcCCCCceee
Q 036733 85 FWSIGILFLS 94 (96)
Q Consensus 85 yN~~~s~~~~ 94 (96)
||++||.++.
T Consensus 82 yN~~~s~i~~ 91 (107)
T cd05516 82 FNLEGSLIYE 91 (107)
T ss_pred HCCCCCHHHH
Confidence 9999999874
No 21
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.2e-27 Score=147.23 Aligned_cols=81 Identities=28% Similarity=0.392 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcC---CCCccCcCCCCcc--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhc
Q 036733 14 KRVLELILNILQRK---DTNEIFAEPVDTK--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 14 ~~~~~~il~~l~~~---~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
.+.|..||+.|.++ +.+++|..||++. .+|||+++|++||||++|++||++|.|.|+++|..|+++| ||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46899999999999 8899999999986 4999999999999999999999999999999999999999 999999
Q ss_pred CCCCceee
Q 036733 87 SIGILFLS 94 (96)
Q Consensus 87 ~~~s~~~~ 94 (96)
+++|.++.
T Consensus 82 ~~~s~i~~ 89 (102)
T cd05498 82 PPDHPVHA 89 (102)
T ss_pred CCCCHHHH
Confidence 99998874
No 22
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3.4e-27 Score=145.18 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCc
Q 036733 14 KRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGIL 91 (96)
Q Consensus 14 ~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~ 91 (96)
.+.|+.|+..|+.++.+++|..+ +..+|||+++|++||||+||++||++|.|.|+++|.+||+|| ||+.||+++ .
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~ 80 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-D 80 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-H
Confidence 45699999999999999999764 457899999999999999999999999999999999999999 999999999 6
Q ss_pred eee
Q 036733 92 FLS 94 (96)
Q Consensus 92 ~~~ 94 (96)
++.
T Consensus 81 ~~~ 83 (102)
T cd05501 81 FGQ 83 (102)
T ss_pred HHH
Confidence 653
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.4e-27 Score=146.20 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHh------cCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhh
Q 036733 13 EKRVLELILNILQ------RKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLK 84 (96)
Q Consensus 13 ~~~~~~~il~~l~------~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~ 84 (96)
+++.|..|++.|. +++.+++|.+|++...+|+||++|++||||++|++||++|.|.|+++|.+|+++| ||+.
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANART 80 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999998 4556799999999999999999999999999999999999999999999999999 9999
Q ss_pred hcCCCCceee
Q 036733 85 FWSIGILFLS 94 (96)
Q Consensus 85 yN~~~s~~~~ 94 (96)
||+++|.++.
T Consensus 81 yn~~~s~i~~ 90 (103)
T cd05519 81 YNQEGSIVYE 90 (103)
T ss_pred HCCCCCHHHH
Confidence 9999998874
No 24
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.9e-26 Score=145.72 Aligned_cols=83 Identities=27% Similarity=0.320 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHh---cCCCCccCcCCCCcc-ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhh
Q 036733 12 PEKRVLELILNILQ---RKDTNEIFAEPVDTK-EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKF 85 (96)
Q Consensus 12 ~~~~~~~~il~~l~---~~~~~~~F~~pv~~~-~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~y 85 (96)
.....|..++..|. +++.+++|..||+.. .+|+|+++|++||||+||++||+++.|+++++|.+|++|| ||+.|
T Consensus 24 ~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~y 103 (128)
T cd05529 24 EERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETF 103 (128)
T ss_pred HHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35677888899999 899999999999999 9999999999999999999999999999999999999999 99999
Q ss_pred cCCCCceee
Q 036733 86 WSIGILFLS 94 (96)
Q Consensus 86 N~~~s~~~~ 94 (96)
|+++|.++.
T Consensus 104 N~~~s~i~~ 112 (128)
T cd05529 104 NEPNSEIAK 112 (128)
T ss_pred CCCCCHHHH
Confidence 999998874
No 25
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=1.6e-26 Score=142.63 Aligned_cols=81 Identities=27% Similarity=0.436 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCC------CCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhh
Q 036733 14 KRVLELILNILQRKD------TNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKF 85 (96)
Q Consensus 14 ~~~~~~il~~l~~~~------~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~y 85 (96)
++.|..+++.+.++. .+++|.++++...+||||++|++||||++|++||+++.|.|+++|.+|++|| ||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 467788888887654 4599999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCceee
Q 036733 86 WSIGILFLS 94 (96)
Q Consensus 86 N~~~s~~~~ 94 (96)
|++||.++.
T Consensus 82 N~~~s~i~~ 90 (103)
T cd05517 82 NEPGSQVYK 90 (103)
T ss_pred CCCCCHHHH
Confidence 999998864
No 26
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=2.2e-26 Score=142.43 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcC------CCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhh
Q 036733 14 KRVLELILNILQRK------DTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKF 85 (96)
Q Consensus 14 ~~~~~~il~~l~~~------~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~y 85 (96)
.+.|..+++.+... +.+++|..||+...+||||++|++||||+||++||+++.|.|+++|.+|++|| ||+.|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45677788877754 55689999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCceee
Q 036733 86 WSIGILFLS 94 (96)
Q Consensus 86 N~~~s~~~~ 94 (96)
|+++|.++.
T Consensus 82 N~~~s~i~~ 90 (105)
T cd05515 82 NEPDSQIYK 90 (105)
T ss_pred CCCCCHHHH
Confidence 999999874
No 27
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.93 E-value=2.8e-26 Score=135.87 Aligned_cols=78 Identities=37% Similarity=0.562 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCceee
Q 036733 17 LELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILFLS 94 (96)
Q Consensus 17 ~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~~~ 94 (96)
|..+++.|.+++.+++|..||+...+|+|+++|++||||++|++||++|.|.|+++|.+||++| ||..||+++|.++.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999 99999999998764
No 28
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.4e-26 Score=140.93 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcC------CCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhh
Q 036733 13 EKRVLELILNILQRK------DTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLK 84 (96)
Q Consensus 13 ~~~~~~~il~~l~~~------~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~ 84 (96)
+...|+.|++.+... ..+++|.++++...+||||++|++||||++|++||++|.|.|+++|.+|+.|| ||+.
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567788888888764 34599999999999999999999999999999999999999999999999999 9999
Q ss_pred hcCCCCceee
Q 036733 85 FWSIGILFLS 94 (96)
Q Consensus 85 yN~~~s~~~~ 94 (96)
||++||.++.
T Consensus 83 yn~~~S~i~~ 92 (106)
T cd05525 83 YYGRKSPIGR 92 (106)
T ss_pred HCCCCCHHHH
Confidence 9999999864
No 29
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=4.4e-26 Score=142.77 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcC------CCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhh
Q 036733 13 EKRVLELILNILQRK------DTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLK 84 (96)
Q Consensus 13 ~~~~~~~il~~l~~~------~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~ 84 (96)
..+.|..|++.|.++ ..+.+|.++++...+||||++|++||||+||++||+++.|.|+++|.+|++|| ||+.
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 457899999999964 44578999999999999999999999999999999999999999999999999 9999
Q ss_pred hcCCCCceee
Q 036733 85 FWSIGILFLS 94 (96)
Q Consensus 85 yN~~~s~~~~ 94 (96)
||+++|.++.
T Consensus 83 yN~~~s~~~~ 92 (113)
T cd05524 83 YYKPDSPEHK 92 (113)
T ss_pred HCCCCCHHHH
Confidence 9999999874
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=4.3e-26 Score=140.76 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=65.6
Q ss_pred cCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCceee
Q 036733 26 RKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILFLS 94 (96)
Q Consensus 26 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~~~ 94 (96)
++..+.+|..+|+...+||||++|++||||+||++||+++.|.|+++|.+|++|| ||+.||++||.++.
T Consensus 20 gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~ 90 (103)
T cd05518 20 GRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYE 90 (103)
T ss_pred CCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4567789999999999999999999999999999999999999999999999999 99999999999874
No 31
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=5.7e-26 Score=140.19 Aligned_cols=83 Identities=23% Similarity=0.330 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHh--cCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcC
Q 036733 12 PEKRVLELILNILQ--RKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWS 87 (96)
Q Consensus 12 ~~~~~~~~il~~l~--~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~ 87 (96)
|+..++..|.+..- ++..+++|.++|+...+||||++|++||||+||++||++|.|.++++|.+|++|| ||+.||+
T Consensus 4 ~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 4 PLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred hHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44455554444432 2357789999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceee
Q 036733 88 IGILFLS 94 (96)
Q Consensus 88 ~~s~~~~ 94 (96)
+||.++.
T Consensus 84 ~~s~i~~ 90 (103)
T cd05520 84 PNSRIYK 90 (103)
T ss_pred CCCHHHH
Confidence 9999874
No 32
>smart00297 BROMO bromo domain.
Probab=99.93 E-value=7.9e-26 Score=139.25 Aligned_cols=85 Identities=32% Similarity=0.484 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcC
Q 036733 10 QMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWS 87 (96)
Q Consensus 10 ~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~ 87 (96)
...+...|..|++.+.+++.+++|..||+...+|+|+++|++||||++|++||++|.|.|+++|.+|+++| ||..||+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~ 84 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNG 84 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceee
Q 036733 88 IGILFLS 94 (96)
Q Consensus 88 ~~s~~~~ 94 (96)
++|.++.
T Consensus 85 ~~s~~~~ 91 (107)
T smart00297 85 PDSEVYK 91 (107)
T ss_pred CCCHHHH
Confidence 9998764
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.7e-25 Score=138.31 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhc------CCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhh
Q 036733 13 EKRVLELILNILQR------KDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLK 84 (96)
Q Consensus 13 ~~~~~~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~ 84 (96)
....+..|++.|.+ ++.+++|.++++.+.+|+||++|++||||++|++||+++.|.|+++|.+|+++| ||+.
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 45667777777776 467799999999999999999999999999999999999999999999999999 9999
Q ss_pred hcCCCCceee
Q 036733 85 FWSIGILFLS 94 (96)
Q Consensus 85 yN~~~s~~~~ 94 (96)
||+++|.++.
T Consensus 82 yn~~~s~i~~ 91 (104)
T cd05522 82 YNENDSQEYK 91 (104)
T ss_pred HCCCCCHHHH
Confidence 9999999874
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.91 E-value=1.4e-24 Score=130.54 Aligned_cols=81 Identities=41% Similarity=0.638 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcC--CCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 14 KRVLELILNILQRK--DTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 14 ~~~~~~il~~l~~~--~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
...|..+++.+..+ +.+++|..||++..+|+|+++|++||||++|++|+++|.|.|+++|.+|+++| ||+.||+++
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999 99999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
+.++.
T Consensus 82 ~~~~~ 86 (99)
T cd04369 82 SPIYK 86 (99)
T ss_pred CHHHH
Confidence 98764
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.4e-24 Score=133.55 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCCCC------ccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhh
Q 036733 13 EKRVLELILNILQRKDTN------EIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLK 84 (96)
Q Consensus 13 ~~~~~~~il~~l~~~~~~------~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~ 84 (96)
+.+.|..+++.+.+.... .+|...++...+||||++|++||||+||++||++ |.|+++|.+|+++| ||+.
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 567888999988865444 6999999998999999999999999999999998 99999999999999 9999
Q ss_pred hcCCCCceee
Q 036733 85 FWSIGILFLS 94 (96)
Q Consensus 85 yN~~~s~~~~ 94 (96)
||++||.++.
T Consensus 80 yN~~~s~i~~ 89 (106)
T cd05521 80 YNTKGSVIYK 89 (106)
T ss_pred HcCCCCHHHH
Confidence 9999999874
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=3.3e-24 Score=133.38 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhc-CCCCccCcCCCCc---c--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhc
Q 036733 15 RVLELILNILQR-KDTNEIFAEPVDT---K--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 15 ~~~~~il~~l~~-~~~~~~F~~pv~~---~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
.+|..++..+.+ -+.+.+|..||.. . .+|+|+++|++||||+||++|+++|.|++++||.+|++|| ||..||
T Consensus 3 ~~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yN 82 (109)
T cd05492 3 CLLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFH 82 (109)
T ss_pred hhHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467788888888 6777999999952 2 3899999999999999999999999999999999999999 999999
Q ss_pred CCCCceee
Q 036733 87 SIGILFLS 94 (96)
Q Consensus 87 ~~~s~~~~ 94 (96)
+++|.++.
T Consensus 83 g~~s~~~~ 90 (109)
T cd05492 83 GADSEQYD 90 (109)
T ss_pred CCCCHHHH
Confidence 99998864
No 37
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.80 E-value=5.4e-20 Score=150.33 Aligned_cols=75 Identities=40% Similarity=0.564 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCce
Q 036733 17 LELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILF 92 (96)
Q Consensus 17 ~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~ 92 (96)
|..|+..|..|+.+|||.+||+...+|||++||++||||+||+.|+..|.|.+.++|..|++|| ||..||.+ |.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999 99999999 544
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.79 E-value=2.8e-19 Score=111.21 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHhcCC------CCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhh
Q 036733 12 PEKRVLELILNILQRKD------TNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCL 83 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~------~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~ 83 (96)
.+++++..++..++++. .+.+|.+.++ ..++|+.+|+.||||++|++|+++|.|.++++|.+|+.+| ||+
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 36788889999998875 3478888877 4478889999999999999999999999999999999999 999
Q ss_pred hhcCCCCceee
Q 036733 84 KFWSIGILFLS 94 (96)
Q Consensus 84 ~yN~~~s~~~~ 94 (96)
.||++||.++.
T Consensus 81 ~yN~~~S~iy~ 91 (110)
T cd05526 81 RLSRTDSEIYE 91 (110)
T ss_pred HhCcccCHHHH
Confidence 99999999874
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.76 E-value=9.1e-19 Score=128.07 Aligned_cols=83 Identities=28% Similarity=0.333 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHhc------CCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhh
Q 036733 12 PEKRVLELILNILQR------KDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCL 83 (96)
Q Consensus 12 ~~~~~~~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~ 83 (96)
++.+.+..++..+.. +..+.+|..+|+...+|+||.+|+.||||.+|+++|+.+.|.++++|.+|+.|| ||.
T Consensus 142 ~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~ 221 (371)
T COG5076 142 LLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCK 221 (371)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 344555555544443 456689999999999999999999999999999999999999999999999999 999
Q ss_pred hhcCCCCceee
Q 036733 84 KFWSIGILFLS 94 (96)
Q Consensus 84 ~yN~~~s~~~~ 94 (96)
.||++++.++.
T Consensus 222 ~yN~~~s~v~~ 232 (371)
T COG5076 222 LYNGPDSSVYV 232 (371)
T ss_pred hccCCCcchhh
Confidence 99999998764
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.69 E-value=5.2e-17 Score=125.71 Aligned_cols=85 Identities=31% Similarity=0.466 Sum_probs=79.6
Q ss_pred CChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcC
Q 036733 10 QMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWS 87 (96)
Q Consensus 10 ~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~ 87 (96)
+-.+...+..++..|..|..+|||.+||+..++||||++|++||||.||+.+|.++.|.....|++|+..+ ||+.||+
T Consensus 604 ~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 604 PGKLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred cchhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 33456778899999999999999999999999999999999999999999999999999999999999988 9999999
Q ss_pred CCCceee
Q 036733 88 IGILFLS 94 (96)
Q Consensus 88 ~~s~~~~ 94 (96)
+++.++.
T Consensus 684 ~~~~y~k 690 (720)
T KOG1472|consen 684 SDTQYYK 690 (720)
T ss_pred ccchhee
Confidence 9998864
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.54 E-value=6.5e-15 Score=92.32 Aligned_cols=54 Identities=30% Similarity=0.402 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCCCccCcCCCCc--cccccHHHHcCCCCCHHHHHHHHhcCCC
Q 036733 14 KRVLELILNILQRKDTNEIFAEPVDT--KEVEDYYEIIKEPMDFGTMRAKLHEGMY 67 (96)
Q Consensus 14 ~~~~~~il~~l~~~~~~~~F~~pv~~--~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y 67 (96)
...|..++..+.+++.+++|..||++ ..+|||+++|++||||+||++++.++.+
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~ 60 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGA 60 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccc
Confidence 34566666777777799999999999 7799999999999999999999999744
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.49 E-value=3.2e-14 Score=113.98 Aligned_cols=85 Identities=42% Similarity=0.667 Sum_probs=81.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhc
Q 036733 9 PQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 9 ~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
...+++++++.++..+...+....|..||+..++|||.++|++||||.+|+.+++++.|+++++|.+|+.+| ||..||
T Consensus 562 ~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 562 GLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred cCchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhh
Confidence 566899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCcee
Q 036733 87 SIGILFL 93 (96)
Q Consensus 87 ~~~s~~~ 93 (96)
..++.++
T Consensus 642 ~~dtv~~ 648 (1051)
T KOG0955|consen 642 AKDTVYY 648 (1051)
T ss_pred ccCeehH
Confidence 9998875
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.44 E-value=7.7e-14 Score=87.49 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCce
Q 036733 51 EPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILF 92 (96)
Q Consensus 51 ~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~ 92 (96)
.||||+||++||.+|.|.++++|++|+++| ||+.||.++..+
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr~~ 106 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRERLL 106 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 689999999999999999999999999999 999999987653
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.38 E-value=3.4e-13 Score=109.22 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCce
Q 036733 15 RVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILF 92 (96)
Q Consensus 15 ~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~ 92 (96)
-.+-.+..++..-+.+|+|.+||+.+..|+||.+|++||||.+|.++...+.|.+.++|.+|+++| ||..||+..+.+
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y 1464 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAY 1464 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccc
Confidence 345666777778899999999999999999999999999999999999999999999999999999 999999999876
Q ss_pred e
Q 036733 93 L 93 (96)
Q Consensus 93 ~ 93 (96)
.
T Consensus 1465 ~ 1465 (1563)
T KOG0008|consen 1465 T 1465 (1563)
T ss_pred c
Confidence 4
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.20 E-value=2.7e-11 Score=93.20 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=77.7
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCC------CccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHh
Q 036733 6 PSAPQMPEKRVLELILNILQRKDT------NEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFF 79 (96)
Q Consensus 6 ~~~~~~~~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~l 79 (96)
+.....++..++..++..+....+ ...|.+..+....|+||.+|.+||+|..|++|+.++.|.+.+.|..|+.+
T Consensus 46 ~p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~l 125 (629)
T KOG1827|consen 46 SPVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLL 125 (629)
T ss_pred ccccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHH
Confidence 334456677888888888876533 36799998999999999999999999999999999999999999999999
Q ss_pred h--hhhhhcCCCCceee
Q 036733 80 T--LCLKFWSIGILFLS 94 (96)
Q Consensus 80 i--N~~~yN~~~s~~~~ 94 (96)
+ ||+.||..+|.++.
T Consensus 126 m~ena~~~n~~ds~~~~ 142 (629)
T KOG1827|consen 126 MTENARLYNRPDSLIYK 142 (629)
T ss_pred HHHHHHHhcCcchhhhh
Confidence 9 99999999999874
No 46
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.12 E-value=8.7e-11 Score=91.58 Aligned_cols=67 Identities=34% Similarity=0.474 Sum_probs=63.6
Q ss_pred cCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCce
Q 036733 26 RKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILF 92 (96)
Q Consensus 26 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~ 92 (96)
.+..+++|..+|+.+.+|+||.+|+-||||+++.+++..+.|.+.++|+.|+.+| ||..||.+.+..
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~ 368 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHG 368 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchh
Confidence 4788999999999999999999999999999999999999999999999999999 999999887654
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.03 E-value=2.2e-10 Score=93.40 Aligned_cols=80 Identities=29% Similarity=0.398 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCC
Q 036733 13 EKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGI 90 (96)
Q Consensus 13 ~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s 90 (96)
+.-++..+++.+...+...+|..||+...++|||.||+.||||.++++.+..+.|.+-++|..|+.+| |..+||++.+
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~ 1341 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLA 1341 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999 9999999977
Q ss_pred ce
Q 036733 91 LF 92 (96)
Q Consensus 91 ~~ 92 (96)
.+
T Consensus 1342 ~~ 1343 (1563)
T KOG0008|consen 1342 SL 1343 (1563)
T ss_pred HH
Confidence 55
No 48
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.02 E-value=5.1e-10 Score=89.50 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhc------CCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhc
Q 036733 15 RVLELILNILQR------KDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 15 ~~~~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
+.+..|.....+ +..+..|...++...+||||.+|+.|+++..|+++++++.|.+..+...|+.++ ||+.||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 557777777764 455689999999999999999999999999999999999999999999999998 999999
Q ss_pred CCCCcee
Q 036733 87 SIGILFL 93 (96)
Q Consensus 87 ~~~s~~~ 93 (96)
.+||.++
T Consensus 1107 ~egs~~y 1113 (1157)
T KOG0386|consen 1107 EEGSRVY 1113 (1157)
T ss_pred cCCceec
Confidence 9999886
No 49
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.85 E-value=1.1e-09 Score=80.15 Aligned_cols=82 Identities=30% Similarity=0.347 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
+.....+.++.++-+.+.-..|..||....+|+|.++|+.|||+.|++.+++.+.|.+..+|..|.+++ ||..||..+
T Consensus 19 p~~~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~ 98 (418)
T KOG1828|consen 19 PDSGDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHP 98 (418)
T ss_pred cchhhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCC
Confidence 455667788888889999999999999999999999999999999999999999999999999999999 999999988
Q ss_pred Ccee
Q 036733 90 ILFL 93 (96)
Q Consensus 90 s~~~ 93 (96)
+.+.
T Consensus 99 Tv~~ 102 (418)
T KOG1828|consen 99 TVPI 102 (418)
T ss_pred cccc
Confidence 8764
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.60 E-value=1.2e-08 Score=74.76 Aligned_cols=84 Identities=17% Similarity=0.042 Sum_probs=76.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhc
Q 036733 9 PQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 9 ~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
.+++...+.....+++...+....|..++....+|.|..+|++|++..|++.+..++.|.| -+|..|..+| ||.+||
T Consensus 205 lqtg~~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~g 283 (418)
T KOG1828|consen 205 LQTGGQQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNG 283 (418)
T ss_pred hccccHHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcC
Confidence 3445667777788888899999999999999999999999999999999999999999999 8999999999 999999
Q ss_pred CCCCcee
Q 036733 87 SIGILFL 93 (96)
Q Consensus 87 ~~~s~~~ 93 (96)
+++..++
T Consensus 284 ehsk~yy 290 (418)
T KOG1828|consen 284 EHSKSYY 290 (418)
T ss_pred CcchHHH
Confidence 9988765
No 51
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.59 E-value=1.8e-08 Score=78.63 Aligned_cols=71 Identities=30% Similarity=0.409 Sum_probs=63.7
Q ss_pred HHhcCCCCccCcCCCCccc--cccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCcee
Q 036733 23 ILQRKDTNEIFAEPVDTKE--VEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILFL 93 (96)
Q Consensus 23 ~l~~~~~~~~F~~pv~~~~--~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~~ 93 (96)
.++++..+|+|..||+... .|+|+.+|++|||+++|..++++..|.+..+..+|+.-+ ||..||..+..+.
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~ 77 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVV 77 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchh
Confidence 4577889999999999765 799999999999999999999998899999999999866 9999998886543
No 52
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.40 E-value=0.00019 Score=46.00 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHhh-hhh
Q 036733 52 PMDFGTMRAKLHEGMYTSLEQFEVCSFFT-LCL 83 (96)
Q Consensus 52 PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li-N~~ 83 (96)
|.||.-+++|++.|.|+|+.+|.+||-.| ++.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~ 91 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAA 91 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988 554
No 53
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.20 E-value=6.4e-05 Score=55.34 Aligned_cols=73 Identities=27% Similarity=0.377 Sum_probs=64.8
Q ss_pred HHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCcee
Q 036733 21 LNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILFL 93 (96)
Q Consensus 21 l~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~~ 93 (96)
+.....+..+|+|.++++....|+|++.+..+|++++.+.++..+.|...++|..|..++ ||..||+....+.
T Consensus 272 i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (371)
T COG5076 272 ITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYY 346 (371)
T ss_pred ccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhh
Confidence 333455667799999999999999999999999999999999999999999999999998 9999998876553
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=93.30 E-value=0.05 Score=44.34 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=37.7
Q ss_pred cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCC
Q 036733 49 IKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGI 90 (96)
Q Consensus 49 I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s 90 (96)
-.-|..+..|+.||++..|++.+.|..|+-.| ||.+|.+.+.
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~ 1093 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNK 1093 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccc
Confidence 44578999999999999999999999999998 9999987654
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=0.13 Score=42.87 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=54.5
Q ss_pred CCccCcCCCCccc-----cccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHH--HHHhh--hhhhhcCCC
Q 036733 29 TNEIFAEPVDTKE-----VEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEV--CSFFT--LCLKFWSIG 89 (96)
Q Consensus 29 ~~~~F~~pv~~~~-----~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~--Dv~li--N~~~yN~~~ 89 (96)
.+..|..|+++.. .++|..+|+++||+...-.+++.+.|.++.+|.. ++.|| |+..||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3567888887654 4689999999999999999999999999999999 99999 999999877
No 56
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=88.82 E-value=0.049 Score=44.38 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=48.9
Q ss_pred CcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHhh--
Q 036733 33 FAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMY--------------T----------SLEQ------FEVCSFFT-- 80 (96)
Q Consensus 33 F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y--------------~----------s~~~------f~~Dv~li-- 80 (96)
|.-+++....|.|.-+..-|.+|+|++.+|.+..| . ++.+ ..+-+..|
T Consensus 86 lv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 86 LVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred hccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 44566666778888899999999999999998877 2 3333 55566678
Q ss_pred hhhhhcCCCCceeec
Q 036733 81 LCLKFWSIGILFLSI 95 (96)
Q Consensus 81 N~~~yN~~~s~~~~~ 95 (96)
||+.++.|||.|.+|
T Consensus 166 at~~~akPgtmvqkm 180 (1113)
T KOG0644|consen 166 ATFSIAKPGTMVQKM 180 (1113)
T ss_pred ceeeecCcHHHHHHH
Confidence 999999999987654
No 57
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=84.72 E-value=1.3 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHh
Q 036733 56 GTMRAKLHEGMYTSLEQFEVCSFF 79 (96)
Q Consensus 56 ~~I~~kl~~~~Y~s~~~f~~Dv~l 79 (96)
..|+..+++|.|.|..|+++|.-.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR 35 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALR 35 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHH
Confidence 468999999999999999999653
No 58
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=82.58 E-value=1.5 Score=25.65 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHH
Q 036733 56 GTMRAKLHEGMYTSLEQFEVCS 77 (96)
Q Consensus 56 ~~I~~kl~~~~Y~s~~~f~~Dv 77 (96)
.-|+.++.+|.|.|..|+++|.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~a 36 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREA 36 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHH
Confidence 3489999999999999999884
No 59
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=62.65 E-value=0.87 Score=36.19 Aligned_cols=62 Identities=6% Similarity=-0.188 Sum_probs=51.4
Q ss_pred ccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCce
Q 036733 31 EIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILF 92 (96)
Q Consensus 31 ~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~ 92 (96)
+.|..-++.+.+|+|+.+++-||.++...+++..+.|.....|..|.... |+-.|+.....+
T Consensus 214 er~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi 277 (629)
T KOG1827|consen 214 ERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYI 277 (629)
T ss_pred cccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhh
Confidence 45666677778999999999999999999999999999998888887755 777777665544
No 60
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=56.13 E-value=20 Score=21.23 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHH
Q 036733 55 FGTMRAKLHEGMYTSLEQFEVCSF 78 (96)
Q Consensus 55 L~~I~~kl~~~~Y~s~~~f~~Dv~ 78 (96)
...|..-+++|.|.|..+++++.-
T Consensus 14 ~~~i~~lV~~G~y~s~SeviR~al 37 (89)
T COG3609 14 VEFIDELVESGRYKSRSEVIRAAL 37 (89)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356889999999999999998843
No 61
>KOG4086 consensus Transcriptional regulator SOH1 [Transcription; Replication, recombination and repair]
Probab=48.44 E-value=7.9 Score=24.60 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.5
Q ss_pred cccHHHHcCCCCCHHHHH
Q 036733 42 VEDYYEIIKEPMDFGTMR 59 (96)
Q Consensus 42 ~p~Y~~~I~~PmdL~~I~ 59 (96)
-|+|.+.|+.|+||..+.
T Consensus 59 ~PeYak~l~YP~CL~mLe 76 (130)
T KOG4086|consen 59 EPEYAKFLKYPQCLHMLE 76 (130)
T ss_pred CccHHHHHhhHhHHHHHH
Confidence 389999999999998653
No 62
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=44.28 E-value=5.1 Score=33.94 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=37.4
Q ss_pred cccHHHHcCCC--CCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 42 VEDYYEIIKEP--MDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 42 ~p~Y~~~I~~P--mdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
+.++...+..+ |++..+.+++.+|.|.+..+|..|..+| ||..+....
T Consensus 798 ~~~~v~~l~~~~~~~~~~~~~r~~s~~~~~~~q~l~d~~li~r~a~~~~~~~ 849 (1080)
T KOG0732|consen 798 SDNVVKILQINQMDWLEEILKRVWSGEYSTPKQFLSDIKLILRDASSSEDSE 849 (1080)
T ss_pred cccceeehhhhhhHHHHHHhhcCCcccccccccccccchhhcccchhccCch
Confidence 45566666655 5566688999999999999999999999 887766543
No 63
>PF07882 Fucose_iso_N2: L-fucose isomerase, second N-terminal domain; InterPro: IPR012889 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=42.17 E-value=5.7 Score=26.85 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=33.0
Q ss_pred CccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 38 DTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 38 ~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
+.+.+.+|.-+=..-+|-..|.+|++.+-|.. +||.+-+.++ ||..|....
T Consensus 19 d~~f~~~ylGmr~E~VD~~Ei~RR~e~~iyD~-~E~e~A~~W~~~~~~~g~d~n 71 (181)
T PF07882_consen 19 DPDFFQEYLGMRVEYVDMSEIIRRMEEGIYDE-EEFEKALAWVKENCKEGDDKN 71 (181)
T ss_dssp -HHHHHHCT--EEEEE-THHHHHHHHCT-S-H-HHHHHHHHHHHHHSEE---TS
T ss_pred CHHHHHHHhCCCceeecHHHHHHHHHccCCCH-HHHHHHHHHHHHhCCcCCCCC
Confidence 34444455555566789999999999999976 7899999988 999766544
No 64
>PF10742 DUF2555: Protein of unknown function (DUF2555); InterPro: IPR019678 This entry represents conserved proteins found in Cyanobacteria. The function is not known.
Probab=36.07 E-value=63 Score=17.76 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=28.6
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHhhhhhhhcCC
Q 036733 54 DFGTMRAKLHEGMYTSLEQFEVCSFFTLCLKFWSI 88 (96)
Q Consensus 54 dL~~I~~kl~~~~Y~s~~~f~~Dv~liN~~~yN~~ 88 (96)
+.-.+.+||+...|.++=+-..|-.++=|..|+.+
T Consensus 13 ~va~LA~RLE~DdY~~pF~~L~DWhlLRalA~~Rp 47 (57)
T PF10742_consen 13 DVAKLAKRLEEDDYPNPFDGLKDWHLLRALAFQRP 47 (57)
T ss_pred HHHHHHHhhhhccCCchhhhhhHHHHHHHHHhcCh
Confidence 44568899999999999999999888866666655
No 65
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=35.79 E-value=79 Score=17.36 Aligned_cols=34 Identities=6% Similarity=0.096 Sum_probs=28.0
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCccCcCCCCccc
Q 036733 8 APQMPEKRVLELILNILQRKDTNEIFAEPVDTKE 41 (96)
Q Consensus 8 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~ 41 (96)
..+.+..+.+..+++-...+....||..++.++.
T Consensus 17 ~~RikvS~a~~~li~y~e~~~~~DP~l~g~~~~~ 50 (63)
T smart00224 17 RERIKVSKAAEELLAYCEQHAEEDPLLTGPPPSK 50 (63)
T ss_pred CceehHHHHHHHHHHHHHcCCCCCCCcCCCCCCC
Confidence 3456778889999999999999999998887653
No 66
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=34.09 E-value=65 Score=17.51 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=19.3
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHH
Q 036733 54 DFGTMRAKLHEGMYTSLEQFEVCSF 78 (96)
Q Consensus 54 dL~~I~~kl~~~~Y~s~~~f~~Dv~ 78 (96)
=|+.|-.||+. .|.|.+++..|..
T Consensus 8 LlS~VN~kLRD-~~~sLd~Lc~~~~ 31 (55)
T PF14056_consen 8 LLSIVNMKLRD-EYSSLDELCYDYD 31 (55)
T ss_pred HHHHHHHHHHh-ccCCHHHHHHHhC
Confidence 36677777766 8999999999976
No 67
>PF12411 Choline_sulf_C: Choline sulfatase enzyme C terminal
Probab=32.46 E-value=86 Score=16.98 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=22.3
Q ss_pred cCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHH
Q 036733 26 RKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAK 61 (96)
Q Consensus 26 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~k 61 (96)
....+|-|.-+.+.. -..|.+.|||..+..+
T Consensus 21 G~~~~WDyqP~~das-----~~YvRnh~~Ld~lE~~ 51 (54)
T PF12411_consen 21 GRFTSWDYQPPQDAS-----QRYVRNHMDLDDLERR 51 (54)
T ss_pred CCCCCCCCCCCcCcH-----HHHHHcCCCHHHHHHH
Confidence 445667776555544 3679999999998765
No 68
>PHA02888 hypothetical protein; Provisional
Probab=32.44 E-value=46 Score=19.62 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=12.0
Q ss_pred HcCCCCCHHHHHHHH
Q 036733 48 IIKEPMDFGTMRAKL 62 (96)
Q Consensus 48 ~I~~PmdL~~I~~kl 62 (96)
.|.-|+||.|+..-+
T Consensus 55 fiefpidl~t~ehil 69 (96)
T PHA02888 55 FIEFPIDLITMEHIL 69 (96)
T ss_pred eEEccHHHHHHHHHH
Confidence 477899999987765
No 69
>PF09590 Env-gp36: Lentivirus surface glycoprotein; InterPro: IPR018582 The proteins in this family are envelope glycoproteins from feline immunodeficiency retrovirus. The process of lentiviral envelope glycoprotein-mediated fusion of membranes is essential for viral entry and syncytia formation [].
Probab=30.71 E-value=66 Score=25.55 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=25.7
Q ss_pred CCCccCcCCCCccc-cccHHHHcCCCCCHHHHHHHHhcCC
Q 036733 28 DTNEIFAEPVDTKE-VEDYYEIIKEPMDFGTMRAKLHEGM 66 (96)
Q Consensus 28 ~~~~~F~~pv~~~~-~p~Y~~~I~~PmdL~~I~~kl~~~~ 66 (96)
+...||+.|-=.+. =.+|.+ |-+|| |..||..+.+++
T Consensus 33 Pg~NPFR~pGiT~~eKqe~ck-iLQp~-Lq~iK~e~~Egk 70 (591)
T PF09590_consen 33 PGVNPFRVPGITPQEKQEYCK-ILQPK-LQEIKQEMQEGK 70 (591)
T ss_pred CCCCCccCCCCCHHHHHHHHH-HHHHH-HHHHHHHHhccc
Confidence 56689998864433 344444 56787 899999887764
No 70
>PHA02891 hypothetical protein; Provisional
Probab=30.10 E-value=1.4e+02 Score=18.44 Aligned_cols=37 Identities=11% Similarity=-0.021 Sum_probs=30.9
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHhh-hhhhhcCCC
Q 036733 53 MDFGTMRAKLHEGMYTSLEQFEVCSFFT-LCLKFWSIG 89 (96)
Q Consensus 53 mdL~~I~~kl~~~~Y~s~~~f~~Dv~li-N~~~yN~~~ 89 (96)
||.-+|-+++++|+=-++.....-++++ |-..+|.|=
T Consensus 1 M~ainIMkdIKrGkDITPSMi~kFi~~ld~e~~~n~PL 38 (120)
T PHA02891 1 MDAINIMKDIKRGKDITPSMIKKFIELLDIEAAFNDPL 38 (120)
T ss_pred CcHHHHHHHhhccCCCCHHHHHHHHHHhcHHHHhcCCC
Confidence 6777899999999988988888888888 777788764
No 71
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=29.30 E-value=37 Score=27.13 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=40.1
Q ss_pred CCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhh
Q 036733 35 EPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLK 84 (96)
Q Consensus 35 ~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~ 84 (96)
--++...+..|+-+=-.++|+..|.+|++.+.|.. +++...+..+ ||..
T Consensus 188 s~vne~~l~~~fGI~ve~VDmsEIirR~~~~~~d~-eE~e~al~wlk~~~~~ 238 (588)
T PRK10991 188 SIVDHNFFESYLGMRVEAVDMTELRRRIDQKIYDE-EELEMALAWAKKNCKE 238 (588)
T ss_pred cccCHHHHHHHhCCEEEEeCHHHHHHHHHhccCCH-HHHHHHHHHHHHhccc
Confidence 34455567788888889999999999999999988 6899998888 7753
No 72
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=25.13 E-value=58 Score=17.36 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCCCC
Q 036733 55 FGTMRAKLHEGMYT 68 (96)
Q Consensus 55 L~~I~~kl~~~~Y~ 68 (96)
...||..+.+|.|.
T Consensus 30 V~~ik~~I~~G~Y~ 43 (57)
T PF04316_consen 30 VAEIKAAIASGTYK 43 (57)
T ss_dssp HHHHHHHHHTT---
T ss_pred HHHHHHHHHcCCCC
Confidence 46799999999997
No 73
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=24.40 E-value=1e+02 Score=17.84 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=14.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHH
Q 036733 57 TMRAKLHEGMYTSLEQFEVCS 77 (96)
Q Consensus 57 ~I~~kl~~~~Y~s~~~f~~Dv 77 (96)
.+..|- +|.|.|+.+|..-+
T Consensus 43 I~~~R~-~g~f~s~~df~~R~ 62 (90)
T PF14579_consen 43 IVEERE-NGPFKSLEDFIQRL 62 (90)
T ss_dssp HHHHHH-CSS-SSHHHHHHHS
T ss_pred HHHhHh-cCCCCCHHHHHHHH
Confidence 444555 78999999999876
No 74
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=24.29 E-value=1.1e+02 Score=21.78 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHH
Q 036733 53 MDFGTMRAKLHEGMYTSLEQFEVCSF 78 (96)
Q Consensus 53 mdL~~I~~kl~~~~Y~s~~~f~~Dv~ 78 (96)
-+|.+|-....+|.|++.++|.+++-
T Consensus 149 ~~La~il~~ya~~~fr~~~dfl~~v~ 174 (262)
T PF14225_consen 149 PNLARILSSYAKGRFRDKDDFLSQVV 174 (262)
T ss_pred ccHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 47889999999999999999999875
No 75
>cd08767 Cdt1_c The C-terminal fold of replication licensing factor Cdt1 is essential for Cdt1 activity and directly interacts with MCM2-7 helicase. Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the Origin Recognition Complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative complex on replicat
Probab=23.01 E-value=59 Score=20.42 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=15.2
Q ss_pred cHHHHcCCCCCHHHHHHHHh
Q 036733 44 DYYEIIKEPMDFGTMRAKLH 63 (96)
Q Consensus 44 ~Y~~~I~~PmdL~~I~~kl~ 63 (96)
+|..+++. +|+++|++||+
T Consensus 108 ~~lk~~k~-~~~~~V~~rL~ 126 (126)
T cd08767 108 DYLKIDKK-VDLEKVRKRLE 126 (126)
T ss_pred eEEEECcc-ccHHHHHHHhC
Confidence 56666776 99999999984
No 76
>PF13358 DDE_3: DDE superfamily endonuclease
Probab=22.56 E-value=97 Score=18.47 Aligned_cols=20 Identities=15% Similarity=0.551 Sum_probs=17.4
Q ss_pred CHHHHHHHHhcCCCCCHHHH
Q 036733 54 DFGTMRAKLHEGMYTSLEQF 73 (96)
Q Consensus 54 dL~~I~~kl~~~~Y~s~~~f 73 (96)
-++.+|+++.++.|.|.+++
T Consensus 126 ~w~~lk~~~~~~~~~~~~~L 145 (146)
T PF13358_consen 126 VWGYLKRRIRRRRFSSIEEL 145 (146)
T ss_pred HHHHHHHHHHhcCCCChHHh
Confidence 57889999999899999886
No 77
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=21.62 E-value=1.6e+02 Score=25.09 Aligned_cols=22 Identities=14% Similarity=-0.067 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHhh-hhhhhcC
Q 036733 66 MYTSLEQFEVCSFFT-LCLKFWS 87 (96)
Q Consensus 66 ~Y~s~~~f~~Dv~li-N~~~yN~ 87 (96)
.|.+.+||.+|+.+| ++..=++
T Consensus 422 ~Y~~~~ell~dL~~i~~SL~~~g 444 (974)
T PTZ00398 422 AYHSTDEILEPLIECYNSLEDVG 444 (974)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCC
Confidence 399999999999999 6655444
No 78
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=21.32 E-value=1.1e+02 Score=25.96 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHhh-hhhhhcCC
Q 036733 66 MYTSLEQFEVCSFFT-LCLKFWSI 88 (96)
Q Consensus 66 ~Y~s~~~f~~Dv~li-N~~~yN~~ 88 (96)
.|.+.++|.+|+..| ++..-++.
T Consensus 359 ~Y~~~~ell~dL~~i~~SL~~~~~ 382 (911)
T PRK00009 359 PYASAEELLADLDLIYQSLRACGM 382 (911)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCC
Confidence 499999999999998 66555543
No 79
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=21.14 E-value=1.6e+02 Score=16.86 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHHHhcCCCCccCcCCCCccccc
Q 036733 10 QMPEKRVLELILNILQRKDTNEIFAEPVDTKEVE 43 (96)
Q Consensus 10 ~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p 43 (96)
+.+..+.+..+++.+..+....||..|+....-|
T Consensus 27 R~~vS~a~~el~~y~E~~~~~DpLl~gv~~~~NP 60 (71)
T KOG4119|consen 27 RIKVSKAAAELLEYCETHATEDPLLEGVPEKENP 60 (71)
T ss_pred HhhHHHHHHHHHHHHHhcCccCccccCCccccCC
Confidence 3456677888888888888888999988776533
Done!