Query 036733
Match_columns 96
No_of_seqs 151 out of 1035
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 07:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 2.3E-31 7.8E-36 166.4 10.3 92 3-94 4-97 (117)
2 2i7k_A Bromodomain-containing 100.0 7.8E-32 2.7E-36 168.8 8.1 88 7-94 3-92 (117)
3 2d9e_A Peregrin; four-helix bu 100.0 1.5E-31 5.1E-36 168.3 8.9 88 7-94 2-91 (121)
4 3hme_A Bromodomain-containing 100.0 2.9E-31 9.9E-36 167.3 9.2 89 6-94 7-97 (123)
5 3d7c_A General control of amin 100.0 2.6E-31 8.7E-36 165.1 7.4 85 10-94 5-91 (112)
6 1e6i_A Transcriptional activat 100.0 4.7E-31 1.6E-35 166.0 8.2 87 8-94 9-97 (121)
7 2oss_A HUNK1 protein, bromodom 100.0 9.5E-31 3.2E-35 165.8 9.2 84 11-94 20-107 (127)
8 2dat_A Possible global transcr 100.0 9.8E-31 3.3E-35 164.9 9.1 92 3-94 4-103 (123)
9 3nxb_A CAT eye syndrome critic 100.0 9.8E-31 3.3E-35 163.3 8.1 85 10-94 14-100 (116)
10 3rcw_A Bromodomain-containing 100.0 2.4E-30 8.1E-35 165.3 9.3 89 6-94 7-97 (135)
11 3mb4_A Protein polybromo-1; PB 100.0 2.6E-30 8.9E-35 163.1 8.7 89 6-94 9-105 (124)
12 4alg_A Bromodomain-containing 100.0 2E-30 6.8E-35 169.0 8.3 89 6-94 26-118 (154)
13 3q2e_A Bromodomain and WD repe 100.0 2.7E-30 9.1E-35 162.8 8.0 86 9-94 7-95 (123)
14 3mb3_A PH-interacting protein; 100.0 5E-30 1.7E-34 163.8 8.4 86 9-94 18-106 (135)
15 3jvl_A Bromodomain-containing 100.0 5.3E-30 1.8E-34 160.8 7.7 88 7-94 4-98 (120)
16 2grc_A Probable global transcr 100.0 7.9E-30 2.7E-34 161.9 8.5 89 6-94 5-102 (129)
17 2ouo_A HUNK1 protein, bromodom 100.0 3E-30 1E-34 164.1 6.5 86 9-94 19-111 (130)
18 3dai_A ATPase family AAA domai 100.0 8.7E-30 3E-34 161.9 7.5 82 12-93 10-93 (130)
19 3p1f_A CREB-binding protein; s 100.0 2.1E-29 7.1E-34 157.9 8.3 83 12-94 11-98 (119)
20 3ljw_A Protein polybromo-1; al 100.0 1.4E-29 4.7E-34 159.0 7.3 87 8-94 4-98 (120)
21 3fkm_X Signaling protein; brom 100.0 1.2E-29 4.3E-34 167.0 6.6 89 6-94 15-107 (166)
22 3iu5_A Protein polybromo-1; PB 100.0 4.3E-29 1.5E-33 155.9 8.4 84 11-94 4-95 (116)
23 3mqm_A Probable histone-lysine 100.0 4.4E-29 1.5E-33 157.8 7.9 84 11-94 8-99 (126)
24 2yyn_A Transcription intermedi 100.0 1.3E-28 4.5E-33 157.3 8.0 81 13-94 21-105 (135)
25 3k2j_A Protein polybromo-1; PB 100.0 1.6E-28 5.6E-33 156.1 8.3 85 10-94 15-107 (130)
26 3uv4_A Second bromodomain of h 100.0 6.3E-29 2.2E-33 162.5 5.9 82 13-94 30-114 (158)
27 2ri7_A Nucleosome-remodeling f 99.9 3.3E-28 1.1E-32 160.6 7.7 83 12-94 72-156 (174)
28 3tlp_A Protein polybromo-1; PB 99.9 2.5E-27 8.6E-32 153.6 7.7 82 13-94 25-115 (150)
29 2dkw_A Hypothetical protein KI 99.9 5.4E-28 1.9E-32 153.9 4.5 78 11-93 11-90 (131)
30 3uv5_A Transcription initiatio 99.9 5.3E-27 1.8E-31 163.9 8.4 83 12-94 14-98 (265)
31 3o36_A Transcription intermedi 99.9 7.6E-27 2.6E-31 155.5 8.0 82 12-94 81-166 (184)
32 3aad_A Transcription initiatio 99.9 4E-26 1.4E-30 161.4 8.3 82 13-94 48-131 (292)
33 3u5n_A E3 ubiquitin-protein li 99.9 5.3E-26 1.8E-30 153.9 6.6 81 12-93 81-166 (207)
34 3uv5_A Transcription initiatio 99.9 9.9E-26 3.4E-30 157.4 8.0 82 13-94 137-221 (265)
35 2ro1_A Transcription intermedi 99.9 2E-25 7E-30 149.5 5.7 76 13-93 77-159 (189)
36 3aad_A Transcription initiatio 99.9 5.5E-25 1.9E-29 155.6 8.0 81 14-94 171-254 (292)
37 2r0y_A Chromatin structure-rem 99.9 2.2E-24 7.6E-29 153.6 5.8 69 26-94 177-247 (311)
38 2r10_A Chromatin structure-rem 99.9 4.5E-24 1.5E-28 154.6 5.9 68 27-94 228-297 (361)
39 2r10_A Chromatin structure-rem 99.9 1.3E-22 4.4E-27 146.9 3.6 81 12-94 78-163 (361)
40 2r0y_A Chromatin structure-rem 99.8 3.9E-22 1.3E-26 142.1 4.6 81 12-94 28-113 (311)
41 3iu6_A Protein polybromo-1; PB 99.8 5.1E-19 1.7E-23 114.0 7.8 80 10-93 5-92 (147)
42 3lqh_A Histone-lysine N-methyl 99.6 8.9E-16 3E-20 102.2 4.9 70 13-93 76-147 (183)
43 3kxe_C Antitoxin protein PARD- 69.8 4.4 0.00015 23.3 2.9 22 56-77 16-37 (88)
44 3ro3_B Minsc, peptide of prote 56.1 2.9 9.9E-05 17.7 0.3 14 67-80 7-20 (22)
45 3s93_A Tudor domain-containing 45.8 29 0.00099 20.3 3.7 52 15-78 10-62 (102)
46 3sf4_D Protein inscuteable hom 30.1 14 0.00049 18.9 0.5 14 67-80 8-21 (52)
47 3rco_A Tudor domain-containing 26.8 33 0.0011 19.7 1.7 54 13-78 10-64 (89)
48 1wh6_A CUT-like 2, homeobox pr 24.6 14 0.00049 21.7 -0.2 52 10-61 16-68 (101)
49 2gpv_G Nuclear receptor corepr 24.4 55 0.0019 14.2 2.0 21 52-72 2-22 (26)
50 2qee_A BH0493 protein; amidohy 23.7 1E+02 0.0035 22.7 4.2 48 43-94 368-422 (437)
51 1fr2_B Colicin E9; protein-pro 22.0 65 0.0022 19.9 2.5 23 56-78 36-58 (134)
52 2jb0_B Colicin E7; hydrolase/i 21.9 66 0.0023 19.8 2.5 23 56-78 33-55 (131)
53 1x2l_A CUT-like 2, homeobox pr 21.2 45 0.0016 19.5 1.6 54 6-59 12-66 (101)
54 2bj7_A Nickel responsive regul 20.7 68 0.0023 19.4 2.4 24 55-78 15-38 (138)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.97 E-value=2.3e-31 Score=166.39 Aligned_cols=92 Identities=28% Similarity=0.405 Sum_probs=85.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--
Q 036733 3 SSVPSAPQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT-- 80 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li-- 80 (96)
+....+......+.|..+++.|.+++.+++|.+||+.+.+|||+++|++||||+||++||++|.|.++++|.+|++||
T Consensus 4 ~~k~~~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~ 83 (117)
T 3g0l_A 4 VKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFD 83 (117)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred CcCCCcCCHHHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 344455566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCceee
Q 036733 81 LCLKFWSIGILFLS 94 (96)
Q Consensus 81 N~~~yN~~~s~~~~ 94 (96)
||+.||+++|.++.
T Consensus 84 Na~~yN~~~s~~~~ 97 (117)
T 3g0l_A 84 NCETFNEDDSDIGR 97 (117)
T ss_dssp HHHHHSCSSSHHHH
T ss_pred HHHHHCCCCCHHHH
Confidence 99999999998874
No 2
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.97 E-value=7.8e-32 Score=168.75 Aligned_cols=88 Identities=28% Similarity=0.440 Sum_probs=83.9
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhh
Q 036733 7 SAPQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLK 84 (96)
Q Consensus 7 ~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~ 84 (96)
+....++.+.|..+++.|++++.+++|..||++..+|||+++|++||||+||++||++|.|.|+++|.+|++|| ||+.
T Consensus 3 e~~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~ 82 (117)
T 2i7k_A 3 EVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMI 82 (117)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hcCCCCceee
Q 036733 85 FWSIGILFLS 94 (96)
Q Consensus 85 yN~~~s~~~~ 94 (96)
||+++|.++.
T Consensus 83 yN~~~s~i~~ 92 (117)
T 2i7k_A 83 YNKPETIYYK 92 (117)
T ss_dssp TSCSSSSHHH
T ss_pred HCCCCCHHHH
Confidence 9999998864
No 3
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=168.28 Aligned_cols=88 Identities=38% Similarity=0.512 Sum_probs=84.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhh
Q 036733 7 SAPQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLK 84 (96)
Q Consensus 7 ~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~ 84 (96)
++...++...|..+|+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+|++|| ||+.
T Consensus 2 ~~~~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (121)
T 2d9e_A 2 SSGSSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLK 81 (121)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hcCCCCceee
Q 036733 85 FWSIGILFLS 94 (96)
Q Consensus 85 yN~~~s~~~~ 94 (96)
||+++|.++.
T Consensus 82 yN~~~s~~~~ 91 (121)
T 2d9e_A 82 YNAKDTIFYR 91 (121)
T ss_dssp HSCTTSHHHH
T ss_pred HCCCCCHHHH
Confidence 9999998874
No 4
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=167.34 Aligned_cols=89 Identities=31% Similarity=0.483 Sum_probs=82.8
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhh
Q 036733 6 PSAPQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCL 83 (96)
Q Consensus 6 ~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~ 83 (96)
.+....++.+.|..+++.|.+++.+++|..||++..+|||+++|++||||+||++||++|.|.++++|.+|++|| ||.
T Consensus 7 re~~~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (123)
T 3hme_A 7 AENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAM 86 (123)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred hhcCCCCceee
Q 036733 84 KFWSIGILFLS 94 (96)
Q Consensus 84 ~yN~~~s~~~~ 94 (96)
.||+++|.++.
T Consensus 87 ~yN~~~s~~~~ 97 (123)
T 3hme_A 87 TYNRPDTVYYK 97 (123)
T ss_dssp HHSCTTSHHHH
T ss_pred HHCCCCCHHHH
Confidence 99999998874
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.97 E-value=2.6e-31 Score=165.11 Aligned_cols=85 Identities=24% Similarity=0.340 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcC
Q 036733 10 QMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWS 87 (96)
Q Consensus 10 ~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~ 87 (96)
+..+.+.|..+++.|.+++.+++|..||++..+|||+++|++||||+||++||++|.|.++++|.+|++|| ||+.||+
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 84 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceee
Q 036733 88 IGILFLS 94 (96)
Q Consensus 88 ~~s~~~~ 94 (96)
++|.++.
T Consensus 85 ~~s~~~~ 91 (112)
T 3d7c_A 85 PDSEYCR 91 (112)
T ss_dssp TTSHHHH
T ss_pred CCCHHHH
Confidence 9998874
No 6
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.97 E-value=4.7e-31 Score=165.98 Aligned_cols=87 Identities=31% Similarity=0.504 Sum_probs=81.5
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhh
Q 036733 8 APQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKF 85 (96)
Q Consensus 8 ~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~y 85 (96)
....+..+.|..||+.|.+++.+++|..||+.+.+|||+++|++||||+||++||++|.|.|+++|.+|++|| ||+.|
T Consensus 9 ~~~~~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 88 (121)
T 1e6i_A 9 PKRGPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY 88 (121)
T ss_dssp --CCTTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCceee
Q 036733 86 WSIGILFLS 94 (96)
Q Consensus 86 N~~~s~~~~ 94 (96)
|+++|.++.
T Consensus 89 N~~~s~i~~ 97 (121)
T 1e6i_A 89 NGENTSYYK 97 (121)
T ss_dssp SCTTSHHHH
T ss_pred CCCCCHHHH
Confidence 999998864
No 7
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.97 E-value=9.5e-31 Score=165.81 Aligned_cols=84 Identities=26% Similarity=0.396 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHHHhcCCCCccCcCCCCcc--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhc
Q 036733 11 MPEKRVLELILNILQRKDTNEIFAEPVDTK--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 11 ~~~~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
..++.+|+.||+.|++++.+++|.+||+.+ .+||||++|++||||+||++||++|.|.++++|.+|++|| ||+.||
T Consensus 20 ~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 99 (127)
T 2oss_A 20 NQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYN 99 (127)
T ss_dssp HHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357888999999999999999999999975 6999999999999999999999999999999999999999 999999
Q ss_pred CCCCceee
Q 036733 87 SIGILFLS 94 (96)
Q Consensus 87 ~~~s~~~~ 94 (96)
+++|.++.
T Consensus 100 ~~~s~i~~ 107 (127)
T 2oss_A 100 KPGDDIVL 107 (127)
T ss_dssp CTTCHHHH
T ss_pred CCCCHHHH
Confidence 99998874
No 8
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=9.8e-31 Score=164.89 Aligned_cols=92 Identities=22% Similarity=0.370 Sum_probs=84.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCC------CCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHH
Q 036733 3 SSVPSAPQMPEKRVLELILNILQRKD------TNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVC 76 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~il~~l~~~~------~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~D 76 (96)
++.....+..+.+.|..|++.|.++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|.+|
T Consensus 4 ~~~~~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D 83 (123)
T 2dat_A 4 GSSGSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKD 83 (123)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 33445566678999999999999876 579999999999999999999999999999999999999999999999
Q ss_pred HHhh--hhhhhcCCCCceee
Q 036733 77 SFFT--LCLKFWSIGILFLS 94 (96)
Q Consensus 77 v~li--N~~~yN~~~s~~~~ 94 (96)
|+|| ||+.||+++|.++.
T Consensus 84 ~~li~~Na~~yN~~~s~i~~ 103 (123)
T 2dat_A 84 VMLLCHNAQTFNLEGSQIYE 103 (123)
T ss_dssp HHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHH
Confidence 9999 99999999998874
No 9
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.97 E-value=9.8e-31 Score=163.29 Aligned_cols=85 Identities=27% Similarity=0.426 Sum_probs=80.7
Q ss_pred CChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcC
Q 036733 10 QMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWS 87 (96)
Q Consensus 10 ~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~ 87 (96)
..++.+.|..+|+.|++++.+++|..||++..+|||+++|++||||+||++||++|.|.++++|.+||+|| ||+.||+
T Consensus 14 ~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 14 LDDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceee
Q 036733 88 IGILFLS 94 (96)
Q Consensus 88 ~~s~~~~ 94 (96)
++|.++.
T Consensus 94 ~~s~~~~ 100 (116)
T 3nxb_A 94 ESSEYTK 100 (116)
T ss_dssp TTCHHHH
T ss_pred CCCHHHH
Confidence 9998874
No 10
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=165.32 Aligned_cols=89 Identities=38% Similarity=0.574 Sum_probs=83.7
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhh
Q 036733 6 PSAPQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCL 83 (96)
Q Consensus 6 ~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~ 83 (96)
.+....++...|..+|+.|++++.+++|..||++..+||||++|++||||+||++||++|.|.++++|.+|++|| ||+
T Consensus 7 ~~~~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (135)
T 3rcw_A 7 MELRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCM 86 (135)
T ss_dssp --CCCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred hhcCCCCceee
Q 036733 84 KFWSIGILFLS 94 (96)
Q Consensus 84 ~yN~~~s~~~~ 94 (96)
.||+++|.++.
T Consensus 87 ~yN~~~s~~~~ 97 (135)
T 3rcw_A 87 KYNARDTVFYR 97 (135)
T ss_dssp HHSCTTSHHHH
T ss_pred HHCCCCCHHHH
Confidence 99999998874
No 11
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.97 E-value=2.6e-30 Score=163.10 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=82.6
Q ss_pred CCCCCChHHHHHHHHHHHHhc------CCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHh
Q 036733 6 PSAPQMPEKRVLELILNILQR------KDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFF 79 (96)
Q Consensus 6 ~~~~~~~~~~~~~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~l 79 (96)
.++...++++.|..+++.|.+ ++.+++|..||+...+|||+++|++||||+||++||++|.|.++++|.+|++|
T Consensus 9 ~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~l 88 (124)
T 3mb4_A 9 KSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVM 88 (124)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 455677899999999999998 55679999999999999999999999999999999999999999999999999
Q ss_pred h--hhhhhcCCCCceee
Q 036733 80 T--LCLKFWSIGILFLS 94 (96)
Q Consensus 80 i--N~~~yN~~~s~~~~ 94 (96)
| ||+.||+++|.++.
T Consensus 89 i~~Na~~yN~~~s~i~~ 105 (124)
T 3mb4_A 89 MFNNACTYNEPESLIYK 105 (124)
T ss_dssp HHHHHHHHSCTTSHHHH
T ss_pred HHHHHHHHCCCCCHHHH
Confidence 9 99999999999874
No 12
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.96 E-value=2e-30 Score=169.03 Aligned_cols=89 Identities=21% Similarity=0.300 Sum_probs=82.1
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCccCcCCCCcc--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--h
Q 036733 6 PSAPQMPEKRVLELILNILQRKDTNEIFAEPVDTK--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--L 81 (96)
Q Consensus 6 ~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N 81 (96)
+......++.+|+.||+.|++++.+++|.+||++. .+||||++|++||||+||++||+++.|.++++|.+||+|| |
T Consensus 26 ~~r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N 105 (154)
T 4alg_A 26 PGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTN 105 (154)
T ss_dssp CCCCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 33344458888999999999999999999999998 5999999999999999999999999999999999999999 9
Q ss_pred hhhhcCCCCceee
Q 036733 82 CLKFWSIGILFLS 94 (96)
Q Consensus 82 ~~~yN~~~s~~~~ 94 (96)
|+.||+++|.++.
T Consensus 106 a~~YN~~~s~i~~ 118 (154)
T 4alg_A 106 CYIYNKPTDDIVL 118 (154)
T ss_dssp HHHHSCTTSHHHH
T ss_pred HHHHCCCCCHHHH
Confidence 9999999998874
No 13
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.96 E-value=2.7e-30 Score=162.85 Aligned_cols=86 Identities=29% Similarity=0.375 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhc
Q 036733 9 PQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 9 ~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
....+++.|..+|+.|.+++.+++|..||++..+|||+++|++||||+||++||++|.|.++++|.+|++|| ||+.||
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 566799999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CC-CCceee
Q 036733 87 SI-GILFLS 94 (96)
Q Consensus 87 ~~-~s~~~~ 94 (96)
++ +|.++.
T Consensus 87 ~~~~s~i~~ 95 (123)
T 3q2e_A 87 PNKRSKIYS 95 (123)
T ss_dssp CCTTSHHHH
T ss_pred CCCCCHHHH
Confidence 96 888764
No 14
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.96 E-value=5e-30 Score=163.78 Aligned_cols=86 Identities=29% Similarity=0.353 Sum_probs=81.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhc
Q 036733 9 PQMPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 9 ~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
....+++.|..+|+.|.+++.+++|..||+...+||||++|++||||+||++||++|.|.++++|.+||+|| ||+.||
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CC-CCceee
Q 036733 87 SI-GILFLS 94 (96)
Q Consensus 87 ~~-~s~~~~ 94 (96)
++ +|.++.
T Consensus 98 ~~~~s~i~~ 106 (135)
T 3mb3_A 98 PSKRSRIYS 106 (135)
T ss_dssp CCTTCHHHH
T ss_pred CCCCCHHHH
Confidence 98 898874
No 15
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.96 E-value=5.3e-30 Score=160.79 Aligned_cols=88 Identities=25% Similarity=0.376 Sum_probs=82.3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCC---CccCcCCCCccc--cccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh-
Q 036733 7 SAPQMPEKRVLELILNILQRKDT---NEIFAEPVDTKE--VEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT- 80 (96)
Q Consensus 7 ~~~~~~~~~~~~~il~~l~~~~~---~~~F~~pv~~~~--~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li- 80 (96)
++......+.|..+|..|..++. +++|..||++.. +|||+++|++||||+||++||++|.|.|+++|.+|++||
T Consensus 4 ~~~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 83 (120)
T 3jvl_A 4 GSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMF 83 (120)
T ss_dssp SCSSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 45566788999999999999887 899999999988 999999999999999999999999999999999999999
Q ss_pred -hhhhhcCCCCceee
Q 036733 81 -LCLKFWSIGILFLS 94 (96)
Q Consensus 81 -N~~~yN~~~s~~~~ 94 (96)
||+.||+++|.++.
T Consensus 84 ~Na~~yN~~~s~~~~ 98 (120)
T 3jvl_A 84 SNCYKYNPPDHEVVA 98 (120)
T ss_dssp HHHHHHSCTTSHHHH
T ss_pred HHHHHHCCCCCHHHH
Confidence 99999999998874
No 16
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.96 E-value=7.9e-30 Score=161.93 Aligned_cols=89 Identities=22% Similarity=0.401 Sum_probs=82.4
Q ss_pred CCCCCChHHHHHHHHHHHHhcCC-------CCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Q 036733 6 PSAPQMPEKRVLELILNILQRKD-------TNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSF 78 (96)
Q Consensus 6 ~~~~~~~~~~~~~~il~~l~~~~-------~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~ 78 (96)
.++.+..+.+.|..||+.|.++. .+++|..||+...+||||++|++||||+||++||++|.|.|+++|.+||+
T Consensus 5 ~~~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~ 84 (129)
T 2grc_A 5 LSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVM 84 (129)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34556679999999999999875 57999999999999999999999999999999999999999999999999
Q ss_pred hh--hhhhhcCCCCceee
Q 036733 79 FT--LCLKFWSIGILFLS 94 (96)
Q Consensus 79 li--N~~~yN~~~s~~~~ 94 (96)
|| ||+.||+++|.++.
T Consensus 85 Li~~Na~~yN~~~s~i~~ 102 (129)
T 2grc_A 85 LLCQNAQTFNLEGSLIYE 102 (129)
T ss_dssp HHHHHHHHHSCTTSHHHH
T ss_pred HHHHHHHHHCCCCCHHHH
Confidence 99 99999999998874
No 17
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.96 E-value=3e-30 Score=164.09 Aligned_cols=86 Identities=26% Similarity=0.380 Sum_probs=78.6
Q ss_pred CCChHHHHHHHHHHHHhcCCC---CccCcCCCCccc--cccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--h
Q 036733 9 PQMPEKRVLELILNILQRKDT---NEIFAEPVDTKE--VEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--L 81 (96)
Q Consensus 9 ~~~~~~~~~~~il~~l~~~~~---~~~F~~pv~~~~--~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N 81 (96)
......+.|..||+.|..++. +++|..||+++. +||||++|++||||+||++||++|.|.|+++|.+||+|| |
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 334567889999999998875 799999999875 999999999999999999999999999999999999999 9
Q ss_pred hhhhcCCCCceee
Q 036733 82 CLKFWSIGILFLS 94 (96)
Q Consensus 82 ~~~yN~~~s~~~~ 94 (96)
|+.||+++|.++.
T Consensus 99 a~~yN~~~s~i~~ 111 (130)
T 2ouo_A 99 CYKYNPPDHEVVA 111 (130)
T ss_dssp HHHHSCTTSHHHH
T ss_pred HHHHcCCCCHHHH
Confidence 9999999998874
No 18
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.96 E-value=8.7e-30 Score=161.88 Aligned_cols=82 Identities=22% Similarity=0.273 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
.+..+|..+++.|.+++.+++|..||++..+|||+++|++||||+||++||++|.|.++++|.+|++|| ||+.||+++
T Consensus 10 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 89 (130)
T 3dai_A 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 467889999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Ccee
Q 036733 90 ILFL 93 (96)
Q Consensus 90 s~~~ 93 (96)
|++.
T Consensus 90 s~~~ 93 (130)
T 3dai_A 90 DPGD 93 (130)
T ss_dssp SHHH
T ss_pred ChhH
Confidence 9774
No 19
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.96 E-value=2.1e-29 Score=157.87 Aligned_cols=83 Identities=25% Similarity=0.397 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHhc-CCCCccCcCCCCcc--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhc
Q 036733 12 PEKRVLELILNILQR-KDTNEIFAEPVDTK--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 12 ~~~~~~~~il~~l~~-~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
.+.+.|..++..|.+ ++.+++|.+||++. .+|||+++|++||||+||++||++|.|.|+++|.+|++|| ||+.||
T Consensus 11 el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 90 (119)
T 3p1f_A 11 ELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYN 90 (119)
T ss_dssp HHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 478889999999987 67999999999998 6999999999999999999999999999999999999999 999999
Q ss_pred CCCCceee
Q 036733 87 SIGILFLS 94 (96)
Q Consensus 87 ~~~s~~~~ 94 (96)
+++|.++.
T Consensus 91 ~~~s~i~~ 98 (119)
T 3p1f_A 91 RKTSRVYK 98 (119)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 99998874
No 20
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.96 E-value=1.4e-29 Score=159.01 Aligned_cols=87 Identities=23% Similarity=0.369 Sum_probs=81.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCC------CccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh-
Q 036733 8 APQMPEKRVLELILNILQRKDT------NEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT- 80 (96)
Q Consensus 8 ~~~~~~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li- 80 (96)
+.+..+++.|..+++.|.++.. +++|.+||+...+|||+++|++||||+||++||++|.|.++++|.+||+||
T Consensus 4 ~~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 4 SSPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 3355689999999999998776 899999999999999999999999999999999999999999999999999
Q ss_pred -hhhhhcCCCCceee
Q 036733 81 -LCLKFWSIGILFLS 94 (96)
Q Consensus 81 -N~~~yN~~~s~~~~ 94 (96)
||+.||+++|.++.
T Consensus 84 ~Na~~yN~~~s~~~~ 98 (120)
T 3ljw_A 84 KNAKTYNEPGSQVFK 98 (120)
T ss_dssp HHHHHHSCTTSHHHH
T ss_pred HHHHHHCCCCCHHHH
Confidence 99999999998874
No 21
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=1.2e-29 Score=167.00 Aligned_cols=89 Identities=22% Similarity=0.353 Sum_probs=80.0
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCccCcCCCCcc--ccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--h
Q 036733 6 PSAPQMPEKRVLELILNILQRKDTNEIFAEPVDTK--EVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--L 81 (96)
Q Consensus 6 ~~~~~~~~~~~~~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N 81 (96)
.......+.+.|..||..|++++.+++|..||++. .+||||++|++||||+||++||+++.|.++++|.+||+|| |
T Consensus 15 ~~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (166)
T 3fkm_X 15 YFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDN 94 (166)
T ss_dssp --CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 34455568999999999999999999999999976 4999999999999999999999999999999999999999 9
Q ss_pred hhhhcCCCCceee
Q 036733 82 CLKFWSIGILFLS 94 (96)
Q Consensus 82 ~~~yN~~~s~~~~ 94 (96)
|+.||+++|.++.
T Consensus 95 a~~yN~~~s~i~~ 107 (166)
T 3fkm_X 95 CSLYNTSNSVVAI 107 (166)
T ss_dssp HHHSSCTTSHHHH
T ss_pred HHHHCCCCCHHHH
Confidence 9999999999874
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=155.87 Aligned_cols=84 Identities=15% Similarity=0.263 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHhcCC------CCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hh
Q 036733 11 MPEKRVLELILNILQRKD------TNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LC 82 (96)
Q Consensus 11 ~~~~~~~~~il~~l~~~~------~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~ 82 (96)
....+.|..+++.|.++. .+++|.+||+...+|||+++|++||||+||++||++|.|.++++|.+|++|| ||
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 83 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNA 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 346789999999999874 4899999999999999999999999999999999999999999999999999 99
Q ss_pred hhhcCCCCceee
Q 036733 83 LKFWSIGILFLS 94 (96)
Q Consensus 83 ~~yN~~~s~~~~ 94 (96)
+.||+++|.++.
T Consensus 84 ~~yN~~~s~~~~ 95 (116)
T 3iu5_A 84 KSYYKPDSPEYK 95 (116)
T ss_dssp HHHSCTTSHHHH
T ss_pred HHHCCCCCHHHH
Confidence 999999998874
No 23
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.96 E-value=4.4e-29 Score=157.78 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHHhcCCC------CccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hh
Q 036733 11 MPEKRVLELILNILQRKDT------NEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LC 82 (96)
Q Consensus 11 ~~~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~ 82 (96)
..+.+.|..+++.|.++.+ +++|.+||+...+||||++|++||||+||++||++|.|.|+++|.+|++|| ||
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4578899999999998654 899999999999999999999999999999999999999999999999999 99
Q ss_pred hhhcCCCCceee
Q 036733 83 LKFWSIGILFLS 94 (96)
Q Consensus 83 ~~yN~~~s~~~~ 94 (96)
+.||+++|.++.
T Consensus 88 ~~yN~~~s~~~~ 99 (126)
T 3mqm_A 88 EKYYGRKSPVGR 99 (126)
T ss_dssp HHHHCTTSHHHH
T ss_pred HHHCCCCCHHHH
Confidence 999999999874
No 24
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=157.34 Aligned_cols=81 Identities=33% Similarity=0.515 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHhh--hhhhhcCC
Q 036733 13 EKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHE--GMYTSLEQFEVCSFFT--LCLKFWSI 88 (96)
Q Consensus 13 ~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~--~~Y~s~~~f~~Dv~li--N~~~yN~~ 88 (96)
..+.|..||..|++++.+++|..||+. .+||||++|++||||+||++||++ +.|.++++|.+||+|| ||+.||++
T Consensus 21 ~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 99 (135)
T 2yyn_A 21 DKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 99 (135)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 468899999999999999999999998 699999999999999999999998 5899999999999999 99999999
Q ss_pred CCceee
Q 036733 89 GILFLS 94 (96)
Q Consensus 89 ~s~~~~ 94 (96)
+|.++.
T Consensus 100 ~s~i~~ 105 (135)
T 2yyn_A 100 DSEVAN 105 (135)
T ss_dssp TSHHHH
T ss_pred CCHHHH
Confidence 998874
No 25
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=156.09 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=78.9
Q ss_pred CChHHHHHHHHHHHHhcCCC------CccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--h
Q 036733 10 QMPEKRVLELILNILQRKDT------NEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--L 81 (96)
Q Consensus 10 ~~~~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N 81 (96)
...+...|..+++.|.+... +++|.+||+...+||||++|++||||+||++||+++.|.|+++|.+|++|| |
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFEN 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34578889999999997654 899999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhcCCCCceee
Q 036733 82 CLKFWSIGILFLS 94 (96)
Q Consensus 82 ~~~yN~~~s~~~~ 94 (96)
|+.||+++|.++.
T Consensus 95 a~~yN~~~s~i~~ 107 (130)
T 3k2j_A 95 AKRYNVPNSAIYK 107 (130)
T ss_dssp HHHHSCTTSHHHH
T ss_pred HHHHCCCCCHHHH
Confidence 9999999998864
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.95 E-value=6.3e-29 Score=162.53 Aligned_cols=82 Identities=26% Similarity=0.342 Sum_probs=73.2
Q ss_pred HHHHHHHHHHH-HhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 13 EKRVLELILNI-LQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 13 ~~~~~~~il~~-l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
+..+|..++.. |+.++.+++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|| ||+.||+++
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 109 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 109 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34445555443 567899999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
|.++.
T Consensus 110 s~i~~ 114 (158)
T 3uv4_A 110 SQYTK 114 (158)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98874
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.95 E-value=3.3e-28 Score=160.61 Aligned_cols=83 Identities=30% Similarity=0.456 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
...+.|..+|+.|.+++.+++|..||++..+|||+++|++||||+||++||++|.|.|+++|.+||+|| ||+.||+++
T Consensus 72 ~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 151 (174)
T 2ri7_A 72 KDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSD 151 (174)
T ss_dssp HHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 467889999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
|.++.
T Consensus 152 s~~~~ 156 (174)
T 2ri7_A 152 SPFYQ 156 (174)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 98874
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.94 E-value=2.5e-27 Score=153.58 Aligned_cols=82 Identities=20% Similarity=0.343 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCCC-------CccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhh
Q 036733 13 EKRVLELILNILQRKDT-------NEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCL 83 (96)
Q Consensus 13 ~~~~~~~il~~l~~~~~-------~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~ 83 (96)
.++.|+.+++.+.+... +++|..||+...+||||++|++||||+||++||++|.|.++++|.+||+|| ||+
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 104 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNAR 104 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 35778888988887654 899999999999999999999999999999999999999999999999999 999
Q ss_pred hhcCCCCceee
Q 036733 84 KFWSIGILFLS 94 (96)
Q Consensus 84 ~yN~~~s~~~~ 94 (96)
.||+++|.++.
T Consensus 105 ~yN~~~s~i~~ 115 (150)
T 3tlp_A 105 HYNEEGSQVYN 115 (150)
T ss_dssp HHSCTTSHHHH
T ss_pred HHCCCCCHHHH
Confidence 99999999874
No 29
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=5.4e-28 Score=153.88 Aligned_cols=78 Identities=26% Similarity=0.283 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCC
Q 036733 11 MPEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSI 88 (96)
Q Consensus 11 ~~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~ 88 (96)
..++..|..|++.|.+++.+++|..| +||||++|++||||+||++||++|.|.|+++|.+|++|| ||+.||++
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~ 85 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPD 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34778899999999999999999998 899999999999999999999999999999999999999 99999999
Q ss_pred CCcee
Q 036733 89 GILFL 93 (96)
Q Consensus 89 ~s~~~ 93 (96)
+|+++
T Consensus 86 ~s~~~ 90 (131)
T 2dkw_A 86 KDPGD 90 (131)
T ss_dssp SSTTH
T ss_pred CChhH
Confidence 99864
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.94 E-value=5.3e-27 Score=163.88 Aligned_cols=83 Identities=28% Similarity=0.414 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
.+...|..+|+.|.+++.+++|..||+...+||||++|++||||+||++||++|.|.++++|.+|++|| ||+.||+++
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 93 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 93 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCC
Confidence 588999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
|.++.
T Consensus 94 s~i~~ 98 (265)
T 3uv5_A 94 HSLTQ 98 (265)
T ss_dssp CHHHH
T ss_pred ChHHH
Confidence 98874
No 31
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.94 E-value=7.6e-27 Score=155.49 Aligned_cols=82 Identities=33% Similarity=0.499 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHhh--hhhhhcC
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHE--GMYTSLEQFEVCSFFT--LCLKFWS 87 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~--~~Y~s~~~f~~Dv~li--N~~~yN~ 87 (96)
.+++.|+.+|..|+.++.+++|..||+.+ +|+|+++|++||||+||++||++ +.|.|+++|.+||+|| ||+.||+
T Consensus 81 ~~~~~c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 159 (184)
T 3o36_A 81 IDKRKCERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNE 159 (184)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 36788999999999999999999999965 89999999999999999999998 7899999999999999 9999999
Q ss_pred CCCceee
Q 036733 88 IGILFLS 94 (96)
Q Consensus 88 ~~s~~~~ 94 (96)
++|.++.
T Consensus 160 ~~s~v~~ 166 (184)
T 3o36_A 160 PDSEVAN 166 (184)
T ss_dssp TTCHHHH
T ss_pred CCCHHHH
Confidence 9998874
No 32
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.93 E-value=4e-26 Score=161.36 Aligned_cols=82 Identities=28% Similarity=0.418 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCC
Q 036733 13 EKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGI 90 (96)
Q Consensus 13 ~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s 90 (96)
+...|..+|+.|++++.+++|..||++..+||||++|++||||+||++||++|.|.++++|.+|++|| ||+.||+++|
T Consensus 48 l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 127 (292)
T 3aad_A 48 LSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 127 (292)
T ss_dssp HHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCch
Confidence 57889999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ceee
Q 036733 91 LFLS 94 (96)
Q Consensus 91 ~~~~ 94 (96)
.++.
T Consensus 128 ~i~~ 131 (292)
T 3aad_A 128 SLTQ 131 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.92 E-value=5.3e-26 Score=153.90 Aligned_cols=81 Identities=28% Similarity=0.453 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHhh--hhhhhc
Q 036733 12 PEKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHE---GMYTSLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~---~~Y~s~~~f~~Dv~li--N~~~yN 86 (96)
...+.|+.||..|.+++.+++|..||+. .+|+|+++|++||||+||++||++ |.|.|+++|.+||+|| ||+.||
T Consensus 81 ~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN 159 (207)
T 3u5n_A 81 VDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFN 159 (207)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999987 699999999999999999999997 7999999999999999 999999
Q ss_pred CCCCcee
Q 036733 87 SIGILFL 93 (96)
Q Consensus 87 ~~~s~~~ 93 (96)
+++|.++
T Consensus 160 ~~~s~v~ 166 (207)
T 3u5n_A 160 EMMKVVQ 166 (207)
T ss_dssp HHHHHHC
T ss_pred CCcchHH
Confidence 9444433
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.92 E-value=9.9e-26 Score=157.43 Aligned_cols=82 Identities=26% Similarity=0.342 Sum_probs=74.4
Q ss_pred HHHHHHHHHHH-HhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCC
Q 036733 13 EKRVLELILNI-LQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIG 89 (96)
Q Consensus 13 ~~~~~~~il~~-l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~ 89 (96)
+...|..++.. +.+++.+++|..||+...+||||++|++||||+||++||++|.|.|+++|.+||+|| ||+.||+++
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~ 216 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 216 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 44555555543 778899999999999999999999999999999999999999999999999999999 999999999
Q ss_pred Cceee
Q 036733 90 ILFLS 94 (96)
Q Consensus 90 s~~~~ 94 (96)
|.++.
T Consensus 217 s~~~~ 221 (265)
T 3uv5_A 217 SQYTK 221 (265)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99874
No 35
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.91 E-value=2e-25 Score=149.45 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcC--CCCCHHHHHHHHhcC---CCCCHHHHHHHHHhh--hhhhh
Q 036733 13 EKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIK--EPMDFGTMRAKLHEG---MYTSLEQFEVCSFFT--LCLKF 85 (96)
Q Consensus 13 ~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~--~PmdL~~I~~kl~~~---~Y~s~~~f~~Dv~li--N~~~y 85 (96)
..+.|..||+.|.+++.+++|.+||+ |+||++|+ +||||+||++||+++ .|.++++|.+||+|| ||++|
T Consensus 77 ~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~y 152 (189)
T 2ro1_A 77 NQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKL 152 (189)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999998 68999998 899999999999999 999999999999999 99999
Q ss_pred cCCCCcee
Q 036733 86 WSIGILFL 93 (96)
Q Consensus 86 N~~~s~~~ 93 (96)
|+ ++.++
T Consensus 153 N~-~s~~~ 159 (189)
T 2ro1_A 153 TE-DKADV 159 (189)
T ss_dssp CC-SSCSS
T ss_pred CC-CCHHH
Confidence 95 66654
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.91 E-value=5.5e-25 Score=155.55 Aligned_cols=81 Identities=26% Similarity=0.362 Sum_probs=73.2
Q ss_pred HHHHHHHHH-HHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCC
Q 036733 14 KRVLELILN-ILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGI 90 (96)
Q Consensus 14 ~~~~~~il~-~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s 90 (96)
...+..++. .|++++.+++|..||+...+||||++|++||||+||++||++|.|.|+++|.+||+|| ||+.||+++|
T Consensus 171 ~~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 171 SFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp HHHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344555443 4778999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ceee
Q 036733 91 LFLS 94 (96)
Q Consensus 91 ~~~~ 94 (96)
.++.
T Consensus 251 ~i~~ 254 (292)
T 3aad_A 251 QYTK 254 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.90 E-value=2.2e-24 Score=153.64 Aligned_cols=69 Identities=26% Similarity=0.462 Sum_probs=65.9
Q ss_pred cCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCceee
Q 036733 26 RKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILFLS 94 (96)
Q Consensus 26 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~~~ 94 (96)
+++.+++|.+||+...+||||++|++||||+||++||++|.|.++++|.+||+|| ||+.||+++|.++.
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~ 247 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYK 247 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3567999999999999999999999999999999999999999999999999999 99999999999874
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.89 E-value=4.5e-24 Score=154.59 Aligned_cols=68 Identities=26% Similarity=0.455 Sum_probs=65.6
Q ss_pred CCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCCceee
Q 036733 27 KDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGILFLS 94 (96)
Q Consensus 27 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s~~~~ 94 (96)
++.+++|.+||+...+||||++|++||||+||++||++|.|.++++|.+||+|| ||+.||+++|.++.
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~ 297 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYK 297 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 568899999999999999999999999999999999999999999999999999 99999999999875
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=1.3e-22 Score=146.95 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHhcC--CCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHhh--hhhhhc
Q 036733 12 PEKRVLELILNILQRK--DTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYT-SLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~--~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~-s~~~f~~Dv~li--N~~~yN 86 (96)
.+..+|..+|+.+.+. ..+++|..||+...+||||++|++||||+||++|+ +.|. ++++|.+||+|| ||+.||
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN 155 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 155 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcC
Confidence 4678899999998653 45799999999999999999999999999999998 5555 899999999999 999999
Q ss_pred CCCCceee
Q 036733 87 SIGILFLS 94 (96)
Q Consensus 87 ~~~s~~~~ 94 (96)
+++|.++.
T Consensus 156 ~~~s~i~~ 163 (361)
T 2r10_A 156 EYDSLIVK 163 (361)
T ss_dssp CSSSHHHH
T ss_pred CCCCHHHH
Confidence 99999874
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.85 E-value=3.9e-22 Score=142.07 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHhcC--CCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHhh--hhhhhc
Q 036733 12 PEKRVLELILNILQRK--DTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYT-SLEQFEVCSFFT--LCLKFW 86 (96)
Q Consensus 12 ~~~~~~~~il~~l~~~--~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~-s~~~f~~Dv~li--N~~~yN 86 (96)
.+...+..+|..+.+. ..+++|.+||+...+||||++|++||||+||++|+ +.|. ++++|.+|++|| ||+.||
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN 105 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 105 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHcc
Confidence 4566677777777653 46799999999999999999999999999999998 5555 899999999999 999999
Q ss_pred CCCCceee
Q 036733 87 SIGILFLS 94 (96)
Q Consensus 87 ~~~s~~~~ 94 (96)
+++|.++.
T Consensus 106 ~~~s~i~~ 113 (311)
T 2r0y_A 106 EYDSLIVK 113 (311)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 99999874
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=113.95 Aligned_cols=80 Identities=13% Similarity=0.235 Sum_probs=72.6
Q ss_pred CChHHHHHHHHHHHHhcCCC------CccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--h
Q 036733 10 QMPEKRVLELILNILQRKDT------NEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--L 81 (96)
Q Consensus 10 ~~~~~~~~~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N 81 (96)
+..+++++..+++.+..+.+ +.+|.+.++.. |+||. ++||+|.+|++|+++|.|+++++|..|+.+| |
T Consensus 5 ~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 5 TLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp CCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 45678899999999998743 37899988877 89998 9999999999999999999999999999999 9
Q ss_pred hhhhcCCCCcee
Q 036733 82 CLKFWSIGILFL 93 (96)
Q Consensus 82 ~~~yN~~~s~~~ 93 (96)
|++||.+||.++
T Consensus 81 Ar~yN~e~S~Iy 92 (147)
T 3iu6_A 81 ARRMNRTDSEIY 92 (147)
T ss_dssp HHHHSCTTSHHH
T ss_pred HHHhCCCCCHHH
Confidence 999999999987
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.59 E-value=8.9e-16 Score=102.20 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCCCccCcCCCCccccccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHhh--hhhhhcCCCC
Q 036733 13 EKRVLELILNILQRKDTNEIFAEPVDTKEVEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSFFT--LCLKFWSIGI 90 (96)
Q Consensus 13 ~~~~~~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~li--N~~~yN~~~s 90 (96)
+.+.++.||+.|..++.+++|.... ++.||||.+|++||++|.|.|+++|.+||++| ||..+|++++
T Consensus 76 l~~~l~~vl~~L~~~~~s~~~~~y~-----------~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~ 144 (183)
T 3lqh_A 76 LQISLKQVLTALLNSRTTSHLLRYR-----------QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQP 144 (183)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHTCC-----------C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhccccHhhhhhh-----------hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCh
Confidence 4566889999999999999998742 59999999999999999999999999999999 9999999987
Q ss_pred cee
Q 036733 91 LFL 93 (96)
Q Consensus 91 ~~~ 93 (96)
.+.
T Consensus 145 e~~ 147 (183)
T 3lqh_A 145 EIK 147 (183)
T ss_dssp HHH
T ss_pred hhh
Confidence 653
No 43
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=69.77 E-value=4.4 Score=23.27 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHH
Q 036733 56 GTMRAKLHEGMYTSLEQFEVCS 77 (96)
Q Consensus 56 ~~I~~kl~~~~Y~s~~~f~~Dv 77 (96)
.-|...+.+|.|.|..|.++|.
T Consensus 16 ~~i~~~V~sG~Y~s~SEviR~~ 37 (88)
T 3kxe_C 16 AFIDSQVADGRYGSASEVIRAG 37 (88)
T ss_dssp HHHHHHHTTTSCSSHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHH
Confidence 4688999999999999999993
No 44
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=56.14 E-value=2.9 Score=17.74 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHhh
Q 036733 67 YTSLEQFEVCSFFT 80 (96)
Q Consensus 67 Y~s~~~f~~Dv~li 80 (96)
-.|++.|..|+++|
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 45788999999886
No 45
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=45.82 E-value=29 Score=20.29 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCCccCcCCCCccc-cccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Q 036733 15 RVLELILNILQRKDTNEIFAEPVDTKE-VEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSF 78 (96)
Q Consensus 15 ~~~~~il~~l~~~~~~~~F~~pv~~~~-~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~ 78 (96)
+....+|..|.-... .+++... .-||.+...+|+.+. .--|.|+++|..++-
T Consensus 10 ~~vkk~irslLiS~K-----~gvtl~~L~~dYr~~~G~~iP~r-------~lGy~sl~~fL~sip 62 (102)
T 3s93_A 10 ECLRKEIRSLLISTK-----DGLSPQELEKEYLLMVGNHLPLR-------ILGYRSTMELVLDMP 62 (102)
T ss_dssp HHHHHHHHHHHHSSS-----SCBCHHHHHHHHHHHHSSCCCTG-------GGTCSSHHHHHHTCT
T ss_pred HHHHHHHHHhheeCC-----CCcCHHHHHHHHHHHcCCcCCch-------hcCcCCHHHHHHcCC
Confidence 334444444443322 3555554 579999999999976 356999999988865
No 46
>3sf4_D Protein inscuteable homolog; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=30.08 E-value=14 Score=18.86 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHhh
Q 036733 67 YTSLEQFEVCSFFT 80 (96)
Q Consensus 67 Y~s~~~f~~Dv~li 80 (96)
-.|++.|..|+++|
T Consensus 8 vDSVqrWmeDLr~M 21 (52)
T 3sf4_D 8 VDSVQRWMEDLKLM 21 (52)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhh
Confidence 45789999999999
No 47
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=26.76 E-value=33 Score=19.66 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCCCccCcCCCCccc-cccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Q 036733 13 EKRVLELILNILQRKDTNEIFAEPVDTKE-VEDYYEIIKEPMDFGTMRAKLHEGMYTSLEQFEVCSF 78 (96)
Q Consensus 13 ~~~~~~~il~~l~~~~~~~~F~~pv~~~~-~p~Y~~~I~~PmdL~~I~~kl~~~~Y~s~~~f~~Dv~ 78 (96)
.......++..+..... .+++... ..||...+..|+-+. +--|.++++|..++-
T Consensus 10 ~~e~V~k~iRslL~S~k-----~gvtl~~L~~DYr~l~G~~iP~r-------~lGy~sl~~fL~siP 64 (89)
T 3rco_A 10 EGDLVSKMLRAVLQSHK-----NGVALPRLQGEYRSLTGDWIPFK-------QLGFPTLEAYLRSVP 64 (89)
T ss_dssp HHHHHHHHHHHHHHTCT-----TCEEHHHHHHHHHHHHSSCCCTT-------TTTCSSHHHHHHTCT
T ss_pred cHHHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHhCCcCChh-------hhCcccHHHHHhccc
Confidence 34455555555554322 2334433 578999999999875 356999999998864
No 48
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=24.63 E-value=14 Score=21.73 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHhcCCCC-ccCcCCCCccccccHHHHcCCCCCHHHHHHH
Q 036733 10 QMPEKRVLELILNILQRKDTN-EIFAEPVDTKEVEDYYEIIKEPMDFGTMRAK 61 (96)
Q Consensus 10 ~~~~~~~~~~il~~l~~~~~~-~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~k 61 (96)
...-++++..|-+.|..+..+ ..|.+.|--..--.+.+++.+|.+.+.+..+
T Consensus 16 ~lDTk~I~~~ike~L~~~~isQ~~FA~~ILgrsqgtlSdlL~~PKpW~~L~~~ 68 (101)
T 1wh6_A 16 EVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQK 68 (101)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTCCHH
T ss_pred cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHccCcCcHHHHhcCCCCHHHHhHH
Confidence 344678899999999998875 6777766443334578899999999887643
No 49
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=24.43 E-value=55 Score=14.20 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHhcCCCCCHHH
Q 036733 52 PMDFGTMRAKLHEGMYTSLEQ 72 (96)
Q Consensus 52 PmdL~~I~~kl~~~~Y~s~~~ 72 (96)
-|.|..|-+|.--|.|...++
T Consensus 2 n~gleaiirkalmg~yd~~e~ 22 (26)
T 2gpv_G 2 NMGLEAIIRKALMGKYDQWEE 22 (26)
T ss_pred ccCHHHHHHHHHccchhhHhh
Confidence 467888888888888876543
No 50
>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A*
Probab=23.66 E-value=1e+02 Score=22.70 Aligned_cols=48 Identities=15% Similarity=-0.080 Sum_probs=34.4
Q ss_pred ccHHHHcCCCCCHHHHHHH----HhcCCCCCHHHHHHHHHhh---hhhhhcCCCCceee
Q 036733 43 EDYYEIIKEPMDFGTMRAK----LHEGMYTSLEQFEVCSFFT---LCLKFWSIGILFLS 94 (96)
Q Consensus 43 p~Y~~~I~~PmdL~~I~~k----l~~~~Y~s~~~f~~Dv~li---N~~~yN~~~s~~~~ 94 (96)
.+|+..| .-+.+.+. +++|.+.+.+...++|+-| ||..|-+..-.+.+
T Consensus 368 heyfRRi----lc~~Lg~~~~~lve~G~~pd~~~l~~~v~~I~y~Na~~yf~~~~~~~~ 422 (437)
T 2qee_A 368 WHHSKSI----IAEVLIDKYDDILQAGWEVTEEEIKRDVADLFSRNFWRFVGRNDHVTS 422 (437)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHTCC-----
T ss_pred HHHHHHH----HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHHHHHHhccccceee
Confidence 3566666 34667667 8999999999999999988 99999877655543
No 51
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=22.04 E-value=65 Score=19.89 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH
Q 036733 56 GTMRAKLHEGMYTSLEQFEVCSF 78 (96)
Q Consensus 56 ~~I~~kl~~~~Y~s~~~f~~Dv~ 78 (96)
+.|..+|..+.+.|+++|-..+-
T Consensus 36 ~~IAdkLRGr~F~sFd~FR~afW 58 (134)
T 1fr2_B 36 DRIADKLRDKEFKSFDDFRKAVW 58 (134)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHH
T ss_pred HHHHHHhcCCcCCCHHHHHHHHH
Confidence 56999999999999999887764
No 52
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=21.88 E-value=66 Score=19.78 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH
Q 036733 56 GTMRAKLHEGMYTSLEQFEVCSF 78 (96)
Q Consensus 56 ~~I~~kl~~~~Y~s~~~f~~Dv~ 78 (96)
+.|..+|..+.+.|+++|-..+-
T Consensus 33 ~qIAdkLRGr~F~sFd~FR~afW 55 (131)
T 2jb0_B 33 DRIANKLRDKEFKSFDDFRKKFW 55 (131)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHH
T ss_pred HHHHHHHcCCcCCCHHHHHHHHH
Confidence 56999999999999999887764
No 53
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=21.21 E-value=45 Score=19.52 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=39.3
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCC-ccCcCCCCccccccHHHHcCCCCCHHHHH
Q 036733 6 PSAPQMPEKRVLELILNILQRKDTN-EIFAEPVDTKEVEDYYEIIKEPMDFGTMR 59 (96)
Q Consensus 6 ~~~~~~~~~~~~~~il~~l~~~~~~-~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~ 59 (96)
+......-++++..|-+.|..+..+ ..|.+-|-...--...+++.+|-+++.++
T Consensus 12 ~~~~~ldTk~I~~~ike~L~~~~isQ~~FA~~VLgrsQgtlS~lL~~PkpW~~L~ 66 (101)
T 1x2l_A 12 AEEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLT 66 (101)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGGCC
T ss_pred CCcCccCHHHHHHHHHHHHHHcCCCHHHHHHHHHccccchHHHHhcCCCCHHHHh
Confidence 3444556789999999999998877 56766553333345677889999988876
No 54
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=20.73 E-value=68 Score=19.40 Aligned_cols=24 Identities=8% Similarity=-0.052 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHH
Q 036733 55 FGTMRAKLHEGMYTSLEQFEVCSF 78 (96)
Q Consensus 55 L~~I~~kl~~~~Y~s~~~f~~Dv~ 78 (96)
+..|.+.++++.|.|-.+|++|.-
T Consensus 15 ~~~ld~~v~~~~y~sRSe~Ir~ai 38 (138)
T 2bj7_A 15 LEKFDQIIEEIGYENRSEAIRDLI 38 (138)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455677778888999999999954
Done!