BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036736
MKKREKKNIIVLTHQAPKSLTLTPKHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWIT
LLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQE
ACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVGVLALIFGIFVG

High Scoring Gene Products

Symbol, full name Information P value
AT4G13730 protein from Arabidopsis thaliana 1.5e-09
DDB_G0269052 gene from Dictyostelium discoideum 0.00091

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036736
        (167 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119435 - symbol:AT4G13730 species:3702 "Arabi...   147  1.5e-09   1
DICTYBASE|DDB_G0269052 - symbol:DDB_G0269052 species:4468...   105  0.00091   1


>TAIR|locus:2119435 [details] [associations]
            symbol:AT4G13730 species:3702 "Arabidopsis thaliana"
            [GO:0005097 "Rab GTPase activator activity" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0032313 "regulation of Rab GTPase activity"
            evidence=IEA] InterPro:IPR000195 Pfam:PF00566 PROSITE:PS50086
            SMART:SM00164 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005622
            eggNOG:COG5210 GO:GO:0005097 GO:GO:0032851 SUPFAM:SSF47923
            EMBL:AL035528 EMBL:AL161537 HSSP:Q08484 HOGENOM:HOG000006332
            OMA:MELYLKL IPI:IPI00533571 PIR:T05242 RefSeq:NP_193109.1
            UniGene:At.33343 ProteinModelPortal:Q9SVN9 SMR:Q9SVN9 PaxDb:Q9SVN9
            PRIDE:Q9SVN9 EnsemblPlants:AT4G13730.1 GeneID:827007
            KEGG:ath:AT4G13730 TAIR:At4g13730 InParanoid:Q9SVN9
            PhylomeDB:Q9SVN9 ProtClustDB:CLSN2685950 ArrayExpress:Q9SVN9
            Genevestigator:Q9SVN9 Uniprot:Q9SVN9
        Length = 449

 Score = 147 (56.8 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 34/68 (50%), Positives = 43/68 (63%)

Query:    20 LTLTPKHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTL 79
             L+L  KH    HD+ L  +L +  +   P F    +  WITLLLT EFN  ++LHIWDTL
Sbjct:   339 LSLLLKH----HDEELWRHLEVT-TKINPQFY---AFRWITLLLTQEFNFVESLHIWDTL 390

Query:    80 LSDPDGPQ 87
             LSDP+GPQ
Sbjct:   391 LSDPEGPQ 398


>DICTYBASE|DDB_G0269052 [details] [associations]
            symbol:DDB_G0269052 species:44689 "Dictyostelium
            discoideum" [GO:0032851 "positive regulation of Rab GTPase
            activity" evidence=IEA] [GO:0032313 "regulation of Rab GTPase
            activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            [GO:0005097 "Rab GTPase activator activity" evidence=IEA]
            InterPro:IPR000195 Pfam:PF00566 PROSITE:PS50086 SMART:SM00164
            dictyBase:DDB_G0269052 EMBL:AAFI02000004 GO:GO:0005622
            eggNOG:COG5210 GO:GO:0005097 GO:GO:0032851 SUPFAM:SSF47923
            RefSeq:XP_646856.1 ProteinModelPortal:Q55F14
            EnsemblProtists:DDB0216614 GeneID:8616539 KEGG:ddi:DDB_G0269052
            InParanoid:Q55F14 OMA:TEHENIS Uniprot:Q55F14
        Length = 604

 Score = 105 (42.0 bits), Expect = 0.00091, P = 0.00091
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query:    25 KHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPD 84
             K + +  D  LE+   L      P F    S  WITLLL+ EF + D L +WD L SDP+
Sbjct:   229 KLNRILKDNDLELWTDLEDKKLNPQFY---SFRWITLLLSQEFELPDVLRLWDALFSDPN 285


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      167       155   0.00096  105 3  11 22  0.42    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  146 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.32u 0.12s 13.44t   Elapsed:  00:00:01
  Total cpu time:  13.32u 0.12s 13.44t   Elapsed:  00:00:01
  Start:  Fri May 10 04:07:14 2013   End:  Fri May 10 04:07:15 2013

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