BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036736
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 114 KHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVG 156
K D+E R+L K FR + D+ + LA+ L+VG
Sbjct: 405 KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVG 447
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 114 KHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVG 156
K D+E R+L K FR + D+ + LA+ L+VG
Sbjct: 422 KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVG 464
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
Length = 345
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 58 WITLLLTHEFNIADNLHIWDTLLSDPDG 85
W+ LL E + + +WDT S+PDG
Sbjct: 249 WMNNLLMREVPLRCTIRLWDTYQSEPDG 276
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b
Length = 346
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 58 WITLLLTHEFNIADNLHIWDTLLSDPDG 85
W+ LL E + + +WDT S+P+G
Sbjct: 250 WMNNLLMRELPLRCTIRLWDTYQSEPEG 277
>pdb|3TFZ|A Chain A, Crystal Structure Of Zhui AromataseCYCLASE FROM
STREPTOMCYES SP. R1128
pdb|3TFZ|B Chain B, Crystal Structure Of Zhui AromataseCYCLASE FROM
STREPTOMCYES SP. R1128
pdb|3TFZ|C Chain C, Crystal Structure Of Zhui AromataseCYCLASE FROM
STREPTOMCYES SP. R1128
pdb|3TFZ|D Chain D, Crystal Structure Of Zhui AromataseCYCLASE FROM
STREPTOMCYES SP. R1128
pdb|3TFZ|E Chain E, Crystal Structure Of Zhui AromataseCYCLASE FROM
STREPTOMCYES SP. R1128
pdb|3TFZ|F Chain F, Crystal Structure Of Zhui AromataseCYCLASE FROM
STREPTOMCYES SP. R1128
Length = 172
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 102 IVGVMISTTDFAKHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVGVL 158
IVG M + ++ TLD E + + F R +D +VAG T AR ++ V+
Sbjct: 88 IVGHM--SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVV 142
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 410
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 58 WITLLLTHEFNIADNLHIWDTLLSD 82
W+ LL EF + + +WDT LS+
Sbjct: 256 WMNCLLMREFQMGTVIRMWDTYLSE 280
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 26.2 bits (56), Expect = 8.0, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 114 KHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVG 156
K D+E + L K FR + D+ + LA+ L+VG
Sbjct: 389 KEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVG 431
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 26.2 bits (56), Expect = 8.0, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 114 KHTLDQEACRSLCKFQFSFRVLSEDDIVAGIFTGSLARNLIVG 156
K D+E + L K FR + D+ + LA+ L+VG
Sbjct: 404 KEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVG 446
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,348,075
Number of Sequences: 62578
Number of extensions: 136186
Number of successful extensions: 215
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 8
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)