Query 036736
Match_columns 167
No_of_seqs 186 out of 360
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:58:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 99.5 4.1E-14 8.9E-19 131.8 7.5 103 55-164 207-321 (621)
2 PRK03659 glutathione-regulated 99.4 1.9E-13 4.1E-18 126.7 7.5 103 55-164 204-318 (601)
3 KOG4567 GTPase-activating prot 99.4 8.9E-14 1.9E-18 123.9 2.9 58 25-85 253-310 (370)
4 COG0475 KefB Kef-type K+ trans 99.4 4.5E-13 9.8E-18 119.0 6.7 105 53-163 208-325 (397)
5 COG4651 RosB Kef-type K+ trans 99.3 6.5E-12 1.4E-16 112.5 7.9 103 56-164 215-329 (408)
6 KOG1092 Ypt/Rab-specific GTPas 99.2 1.4E-11 3E-16 113.2 3.2 95 32-135 373-475 (484)
7 PRK10669 putative cation:proto 98.8 1.5E-08 3.3E-13 92.6 7.6 76 89-164 243-329 (558)
8 KOG1091 Ypt/Rab-specific GTPas 98.5 8.7E-08 1.9E-12 90.7 3.5 63 39-117 267-330 (625)
9 PLN03159 cation/H(+) antiporte 98.1 5.2E-06 1.1E-10 80.7 7.1 81 84-164 283-377 (832)
10 smart00164 TBC Domain in Tre-2 97.9 1E-05 2.2E-10 63.3 3.7 53 28-83 144-197 (199)
11 TIGR00932 2a37 transporter, mo 97.4 0.00012 2.5E-09 60.8 3.3 49 86-135 219-269 (273)
12 PF00566 RabGAP-TBC: Rab-GTPas 97.3 0.00015 3.2E-09 56.4 2.1 50 28-80 142-191 (214)
13 COG5210 GTPase-activating prot 97.1 0.00068 1.5E-08 62.0 4.9 47 34-83 361-407 (496)
14 PF00999 Na_H_Exchanger: Sodiu 96.7 0.00043 9.4E-09 59.2 0.0 81 83-163 223-318 (380)
15 PRK05326 potassium/proton anti 96.6 0.0053 1.1E-07 56.8 6.3 77 87-163 237-327 (562)
16 KOG1093 Predicted protein kina 94.3 0.022 4.9E-07 55.3 1.9 62 25-89 485-546 (725)
17 KOG3636 Uncharacterized conser 87.9 0.57 1.2E-05 45.1 3.7 54 29-85 162-215 (669)
18 KOG2058 Ypt/Rab GTPase activat 82.6 1.2 2.6E-05 41.7 3.1 46 36-84 303-348 (436)
19 KOG2224 Uncharacterized conser 82.4 0.91 2E-05 43.7 2.3 36 54-93 645-680 (781)
20 KOG2197 Ypt/Rab-specific GTPas 76.6 1.3 2.9E-05 41.5 1.4 34 53-86 356-389 (488)
21 KOG2223 Uncharacterized conser 74.0 1.4 3E-05 42.3 0.8 47 39-88 463-509 (586)
22 TIGR00844 c_cpa1 na(+)/h(+) an 73.6 11 0.00024 38.0 6.9 72 88-159 258-349 (810)
23 TIGR00831 a_cpa1 Na+/H+ antipo 45.1 19 0.00041 33.7 2.8 27 86-112 222-248 (525)
24 KOG4436 Predicted GTPase activ 41.9 22 0.00047 36.4 2.8 56 29-87 720-775 (948)
25 TIGR03802 Asp_Ala_antiprt aspa 39.0 1E+02 0.0023 29.3 6.7 63 98-164 39-114 (562)
26 KOG1102 Rab6 GTPase activator 37.0 7.2 0.00016 35.5 -1.3 44 37-83 290-333 (397)
27 KOG2222 Uncharacterized conser 37.0 29 0.00062 34.3 2.7 77 39-129 320-397 (848)
28 TIGR03802 Asp_Ala_antiprt aspa 32.4 1.5E+02 0.0033 28.3 6.7 56 94-149 415-490 (562)
29 TIGR01625 YidE_YbjL_dupl AspT/ 31.5 2.3E+02 0.005 22.7 6.7 71 92-162 19-110 (154)
30 PRK04972 putative transporter; 29.1 2E+02 0.0043 27.5 6.8 67 93-164 36-116 (558)
31 TIGR00840 b_cpa1 sodium/hydrog 28.4 2.1E+02 0.0046 27.4 6.9 23 87-109 252-274 (559)
32 PF06826 Asp-Al_Ex: Predicted 27.3 2.8E+02 0.006 22.6 6.6 70 90-160 19-106 (169)
33 PRK14853 nhaA pH-dependent sod 26.1 78 0.0017 29.7 3.5 47 87-134 220-282 (423)
34 KOG1650 Predicted K+/H+-antipo 25.1 1.2E+02 0.0026 30.3 4.8 78 87-164 272-362 (769)
35 PRK03818 putative transporter; 24.1 2.8E+02 0.0062 26.4 6.9 63 98-164 34-117 (552)
36 PRK04972 putative transporter; 21.1 3.2E+02 0.0069 26.2 6.6 68 91-159 407-494 (558)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.49 E-value=4.1e-14 Score=131.84 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=88.9
Q ss_pred hHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccccccCCchhhHHHHHHHHhcccchhhhhhhh--hhhHhHHHHHhhh
Q 036736 55 SILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ--EACRSLCKFQFSF 132 (167)
Q Consensus 55 aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~--eP~r~lfl~lFF~ 132 (167)
-+||+....++|.++..++.+. ....++++.+|+|+++|||+||+++++++| +|++|+ +|||++|+++||+
T Consensus 207 l~~~~~~~~~~e~~~~~~l~lv------~~~a~la~~~Gls~~lGAFlAGl~l~~~~~-~~~le~~i~pf~~lll~lFFi 279 (621)
T PRK03562 207 ALRFVARSGLREVFTAVALFLV------FGFGLLMEEVGLSMALGAFLAGVLLASSEY-RHALESDIEPFKGLLLGLFFI 279 (621)
T ss_pred HHHHHHHhCCchHHHHHHHHHH------HHHHHHHHHhCccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888999988888777 667789999999999999999999999999 667777 9999999999999
Q ss_pred hhhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036736 133 RVLS----------EDDIVAGIFTGSLARNLIVGVLALIFGI 164 (167)
Q Consensus 133 ~~~~----------~~~~~~~v~~~~~~k~lv~~~l~~~~g~ 164 (167)
++-+ |++++.-+++.++.|.+++++.++.+|.
T Consensus 280 ~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~ 321 (621)
T PRK03562 280 AVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLGV 321 (621)
T ss_pred HhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8655 4455666777889999999999999885
No 2
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.44 E-value=1.9e-13 Score=126.71 Aligned_cols=103 Identities=24% Similarity=0.343 Sum_probs=87.8
Q ss_pred hHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccccccCCchhhHHHHHHHHhcccchhhhhhhh--hhhHhHHHHHhhh
Q 036736 55 SILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ--EACRSLCKFQFSF 132 (167)
Q Consensus 55 aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~--eP~r~lfl~lFF~ 132 (167)
.+||+....++|..+..++.+. ....++++.+|+|+++|||+||++++++++ +|++|+ +||||+|+++||+
T Consensus 204 ~~~~~~~~~~~e~~~~~~l~~v------l~~a~l~~~~Gls~~LGAFlaGl~l~~s~~-~~~l~~~i~pf~~lll~lFFi 276 (601)
T PRK03659 204 LFRFIAASGVREVFTAAALLLV------LGSALFMDALGLSMALGTFIAGVLLAESEY-RHELEIAIEPFKGLLLGLFFI 276 (601)
T ss_pred HHHHHHHcCCchHHHHHHHHHH------HHHHHHHHHhCccHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHHHH
Confidence 4577777788899988888776 666788999999999999999999999999 567776 9999999999999
Q ss_pred hhhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036736 133 RVLS----------EDDIVAGIFTGSLARNLIVGVLALIFGI 164 (167)
Q Consensus 133 ~~~~----------~~~~~~~v~~~~~~k~lv~~~l~~~~g~ 164 (167)
++-+ |++++..++++++.|.+++++.++.+|.
T Consensus 277 ~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~ 318 (601)
T PRK03659 277 SVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGL 318 (601)
T ss_pred HHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8655 4555666777889999999999998874
No 3
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.41 E-value=8.9e-14 Score=123.89 Aligned_cols=58 Identities=38% Similarity=0.714 Sum_probs=47.2
Q ss_pred ccCcchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCC
Q 036736 25 KHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDG 85 (167)
Q Consensus 25 ~~~~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~ 85 (167)
|.+++++..|.|+|.++++++|+|||| +|||++++++|||++||++++||+++||...
T Consensus 253 r~~~~lk~~D~EL~~~L~~~~i~Pqfy---aFRWitLLLsQEF~lpDvi~lWDsl~sD~~r 310 (370)
T KOG4567|consen 253 RLSELLKKHDEELWRHLEEKEIHPQFY---AFRWITLLLSQEFPLPDVIRLWDSLLSDPQR 310 (370)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCccch---hHHHHHHHHhccCCchhHHHHHHHHhcChhh
Confidence 444455555555555555666669999 9999999999999999999999999999886
No 4
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.39 E-value=4.5e-13 Score=119.00 Aligned_cols=105 Identities=23% Similarity=0.229 Sum_probs=94.6
Q ss_pred cchHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccccccCCchhhHHHHHHHHhcccchhhhhhhh--hhhHh-HHHHH
Q 036736 53 HSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ--EACRS-LCKFQ 129 (167)
Q Consensus 53 ~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~--eP~r~-lfl~l 129 (167)
++-+||++....+|..+..++.+. ...+++++..|+|+++|||+||+++|++++++|++|+ +|+|+ +|..+
T Consensus 208 ~~~~r~~~~~~~~e~~~~~~l~i~------l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fipl 281 (397)
T COG0475 208 PPLFRRVAKTESSELFILFVLLLV------LGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPL 281 (397)
T ss_pred HHHHHHHHhccchHHHHHHHHHHH------HHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHH
Confidence 456899999999999999999999 8889999999999999999999999999997567777 99999 99999
Q ss_pred hhhhhhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036736 130 FSFRVLS----------EDDIVAGIFTGSLARNLIVGVLALIFG 163 (167)
Q Consensus 130 FF~~~~~----------~~~~~~~v~~~~~~k~lv~~~l~~~~g 163 (167)
||+++-+ +.+++.-+.+..+.|..+.+..+|.+|
T Consensus 282 FFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g 325 (397)
T COG0475 282 FFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLG 325 (397)
T ss_pred HHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998866 555677888889999999999999998
No 5
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=6.5e-12 Score=112.54 Aligned_cols=103 Identities=15% Similarity=0.209 Sum_probs=88.6
Q ss_pred HHHHHHHhccchhhhhHHHHHHhhhcCCCCCc-cccccCCchhhHHHHHHHHhcccchhhhhhhh-hhhHhHHHHHhhhh
Q 036736 56 ILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ-CSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACRSLCKFQFSFR 133 (167)
Q Consensus 56 FRWI~LL~srEF~lad~LrIWD~lls~~~~a~-l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~-eP~r~lfl~lFF~~ 133 (167)
+..+....+||.+.-.++-+= .+.++ .++.+|.|.++|||+|||++++||.|+...|+ .|+||.|+++||++
T Consensus 215 le~~a~tGsrElf~L~vla~A------LgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvs 288 (408)
T COG4651 215 LERVAATGSRELFTLAVLAIA------LGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVS 288 (408)
T ss_pred HHHHHHcCcHHHHHHHHHHHH------HHHhhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHH
Confidence 366778899999987777655 34333 45778999999999999999999999999998 99999999999999
Q ss_pred hhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036736 134 VLS----------EDDIVAGIFTGSLARNLIVGVLALIFGI 164 (167)
Q Consensus 134 ~~~----------~~~~~~~v~~~~~~k~lv~~~l~~~~g~ 164 (167)
+-+ |+.+.+...+++..|++.-|..+|.||-
T Consensus 289 VGmlf~P~~l~~~pl~vlatllii~~gKs~aaf~ivr~Fg~ 329 (408)
T COG4651 289 VGMLFDPMILIQQPLAVLATLLIILFGKSVAAFFIVRAFGH 329 (408)
T ss_pred hhhhcCcHHhhcchHHHHHHHHHHHhhhHHHHHHHHHHhCC
Confidence 877 5667788889999999999999999985
No 6
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.4e-11 Score=113.17 Aligned_cols=95 Identities=21% Similarity=0.415 Sum_probs=78.2
Q ss_pred hhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCCC------cccccc-CCchhhHH-HHH
Q 036736 32 DQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGP------QCSDKL-GLSLDLGS-FIV 103 (167)
Q Consensus 32 ~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a------~l~~~l-GLS~aLGA-FiA 103 (167)
-+|++ ..++| |++|||||++||+.|||++..+||+||||+|+.++. .|++.+ .-|.+|-- .+.
T Consensus 373 hkHlq-~~gve--------ylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ 443 (484)
T KOG1092|consen 373 HKHLQ-EHGVE--------YLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQ 443 (484)
T ss_pred HHHHH-HhchH--------HHHHHHHHHHHHHHhhccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 38999 59999 999999999999999999999999999999998763 344433 23555544 788
Q ss_pred HHHhcccchhhhhhhhhhhHhHHHHHhhhhhh
Q 036736 104 GVMISTTDFAKHTLDQEACRSLCKFQFSFRVL 135 (167)
Q Consensus 104 GvmLs~s~~s~h~le~eP~r~lfl~lFF~~~~ 135 (167)
|+++--++.+.|.|+++-+.-++.-.|+.--.
T Consensus 444 ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~ 475 (484)
T KOG1092|consen 444 ELILFLQNLPTHNWSDREIELLLSEAFRLKSV 475 (484)
T ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888865433
No 7
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=98.78 E-value=1.5e-08 Score=92.57 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=61.4
Q ss_pred ccccCCchhhHHHHHHHHhcccchhhhhhhh-hhhHhHHHHHhhhhhhc----------HHHHHHHHHHHHHHHHHHHHH
Q 036736 89 SDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACRSLCKFQFSFRVLS----------EDDIVAGIFTGSLARNLIVGV 157 (167)
Q Consensus 89 ~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~-eP~r~lfl~lFF~~~~~----------~~~~~~~v~~~~~~k~lv~~~ 157 (167)
++.+|+|+.+|||+||++++++++++...++ .|++++|+.+||+.+-+ +..++.-+++.++.|.+..+.
T Consensus 243 ~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~ 322 (558)
T PRK10669 243 VELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFF 322 (558)
T ss_pred HHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999995544445 99999999999987655 223344556677889999999
Q ss_pred HHHHHhh
Q 036736 158 LALIFGI 164 (167)
Q Consensus 158 l~~~~g~ 164 (167)
.++.+|.
T Consensus 323 ~~~~~g~ 329 (558)
T PRK10669 323 LVRLFGH 329 (558)
T ss_pred HHHHhCC
Confidence 9988874
No 8
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=8.7e-08 Score=90.71 Aligned_cols=63 Identities=25% Similarity=0.479 Sum_probs=48.0
Q ss_pred HhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHH-hhhcCCCCCccccccCCchhhHHHHHHHHhcccchhhhhh
Q 036736 39 LALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWD-TLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTL 117 (167)
Q Consensus 39 ~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD-~lls~~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~l 117 (167)
..+.+.+|.||+| +.||+++||.|||++.|.|.+|| .++. +...|++++||.+|--=|=|+.+
T Consensus 267 ~HL~~l~i~pqif---giRWlRlLFGREfpL~dLLiVWD~~l~~-------------d~pr~~Lv~~m~VsmLL~IRd~L 330 (625)
T KOG1091|consen 267 SHLVELGIEPQIF---GIRWLRLLFGREFPLQDLLIVWDHVLIF-------------DSPRGILVACMFVSMLLYIRDSL 330 (625)
T ss_pred HHHHhcCCchHHH---HHHHHHHHHcchhHHHHHHHHhhhhhhc-------------cCchHHHHHHHHHHHHHHHHHHH
Confidence 3344445559999 99999999999999999999999 3333 45689999999887554434333
No 9
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=98.14 E-value=5.2e-06 Score=80.74 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=60.3
Q ss_pred CCCccccccCCchhhHHHHHHHHhcccchhhhhhhh-hhh-HhHHHHHhhhhhhc---H-------HHHH--HHHHHHHH
Q 036736 84 DGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EAC-RSLCKFQFSFRVLS---E-------DDIV--AGIFTGSL 149 (167)
Q Consensus 84 ~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~-eP~-r~lfl~lFF~~~~~---~-------~~~~--~~v~~~~~ 149 (167)
...++++.+|+|..+|||++|++++++++++...|. +++ .++|+-+||+.+-+ . .|.+ .-+++..+
T Consensus 283 ~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~ 362 (832)
T PLN03159 283 ISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASA 362 (832)
T ss_pred HHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHH
Confidence 345688999999999999999999999886544555 887 89999999987655 1 1222 22233456
Q ss_pred HHHHHHHHHHHHHhh
Q 036736 150 ARNLIVGVLALIFGI 164 (167)
Q Consensus 150 ~k~lv~~~l~~~~g~ 164 (167)
.|.+..++.++.+|.
T Consensus 363 gK~~g~~l~a~~~g~ 377 (832)
T PLN03159 363 GKIMGTIIIAFFYTM 377 (832)
T ss_pred HHHHHHHHHHHHhCC
Confidence 899888888887764
No 10
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=97.91 E-value=1e-05 Score=63.30 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=42.1
Q ss_pred cchhhhhHHHHHhccc-CCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCC
Q 036736 28 SLFHDQTLEINLALNR-SSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDP 83 (167)
Q Consensus 28 ~~~~~~~le~~~~l~~-~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~ 83 (167)
.++...+-+++..+++ .++.|..| ++||+.++|++|++++.++|+||.++++.
T Consensus 144 ~ll~~~~p~l~~~l~~~~~i~~~~~---~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 144 RLVKEYDPDLYKHLKDKLGIDPSLY---ALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHCHHHHHHHHHhcCCCchhH---HHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 3444444455555553 56669999 99999999999999999999999999985
No 11
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=97.43 E-value=0.00012 Score=60.84 Aligned_cols=49 Identities=33% Similarity=0.565 Sum_probs=42.2
Q ss_pred CccccccCCchhhHHHHHHHHhcccchhhhhhhh--hhhHhHHHHHhhhhhh
Q 036736 86 PQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ--EACRSLCKFQFSFRVL 135 (167)
Q Consensus 86 a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~--eP~r~lfl~lFF~~~~ 135 (167)
..+++.+|+|..+|||++|+++++.+. ++.+++ +|++++|.-+||+..-
T Consensus 219 ~~la~~~g~s~~lgaf~aGl~~~~~~~-~~~l~~~l~~~~~~f~plFF~~~G 269 (273)
T TIGR00932 219 AYFADLLGLSMALGAFLAGVVLSESEY-RHKLESDLEPIGGVLLPLFFISVG 269 (273)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHcCCch-HHHHHHHHHhHHHHHHHHHHHHhC
Confidence 457789999999999999999999888 455666 9999999999998753
No 12
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=97.27 E-value=0.00015 Score=56.41 Aligned_cols=50 Identities=24% Similarity=0.497 Sum_probs=36.8
Q ss_pred cchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhh
Q 036736 28 SLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLL 80 (167)
Q Consensus 28 ~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~ll 80 (167)
.++...+.+++..+++.++.|..| +++|+.++|+++++.++++|+||.++
T Consensus 142 ~ll~~~~P~l~~~l~~~~~~~~~~---~~~w~~~lF~~~l~~~~~~~lwD~l~ 191 (214)
T PF00566_consen 142 QLLKKHDPELYNHLKQLGVDPEIY---AFPWFLTLFSRSLPFDDVLRLWDFLL 191 (214)
T ss_dssp HHHHHHTHHHHHHHHHTT-GGHHH---HHHHHHTTTTTTS-HHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhh---hhhhhHhhcCCcCCHHHHHHHHHHHH
Confidence 334444444445555556669999 99999999999999999999999555
No 13
>COG5210 GTPase-activating protein [General function prediction only]
Probab=97.10 E-value=0.00068 Score=62.02 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=38.0
Q ss_pred hHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCC
Q 036736 34 TLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDP 83 (167)
Q Consensus 34 ~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~ 83 (167)
+-+++-.+.+..+.+..| ++||+.++|.++|+++.++|+||.+|.+.
T Consensus 361 ~p~l~~hl~~~~~~~~~~---~~~w~l~lF~~~~p~e~~lriwD~lf~eg 407 (496)
T COG5210 361 DPELYEHLLREGVVLLMF---AFRWFLTLFVREFPLEYALRIWDCLFLEG 407 (496)
T ss_pred HHHHHHHHHHcCCchhhh---hHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 333444444455558898 99999999999999999999999999983
No 14
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=96.67 E-value=0.00043 Score=59.19 Aligned_cols=81 Identities=22% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCCccccccCCchhhHHHHHHHHhcccchhhhhhhh-hhhH-hHHHHHhhhhhhc-------------HHHHHHHHHHH
Q 036736 83 PDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ-EACR-SLCKFQFSFRVLS-------------EDDIVAGIFTG 147 (167)
Q Consensus 83 ~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~-eP~r-~lfl~lFF~~~~~-------------~~~~~~~v~~~ 147 (167)
.-...+++.+|+|..+|||++|++++.++.++...+. +++. +++..+||+..-+ ++..+.-+...
T Consensus 223 ~~~~~~a~~~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~ 302 (380)
T PF00999_consen 223 LLLYGLAEILGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAI 302 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccccccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHH
Confidence 3346788999999999999999999988885554444 9999 8888888855443 11122222333
Q ss_pred HHHHHHHHHHHHHHHh
Q 036736 148 SLARNLIVGVLALIFG 163 (167)
Q Consensus 148 ~~~k~lv~~~l~~~~g 163 (167)
.+.|.+..+...+..|
T Consensus 303 ~~~k~~~~~~~~~~~~ 318 (380)
T PF00999_consen 303 LLGKFIGVYLASRLFG 318 (380)
T ss_dssp ----------------
T ss_pred HHhhhceeehhhhhcc
Confidence 4678887777776554
No 15
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.56 E-value=0.0053 Score=56.81 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=50.0
Q ss_pred ccccccCCchhhHHHHHHHHhcccchhhh-hhhh--hhhHhHHHHHhhhhhhc---HH--------HHHHHHHHHHHHHH
Q 036736 87 QCSDKLGLSLDLGSFIVGVMISTTDFAKH-TLDQ--EACRSLCKFQFSFRVLS---ED--------DIVAGIFTGSLARN 152 (167)
Q Consensus 87 ~l~~~lGLS~aLGAFiAGvmLs~s~~s~h-~le~--eP~r~lfl~lFF~~~~~---~~--------~~~~~v~~~~~~k~ 152 (167)
.+++.+|.|..+|+|++|+++++++.+++ ..+. +++..++..+||+..-+ +. .++..+++++++|.
T Consensus 237 ~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~ 316 (562)
T PRK05326 237 ALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARP 316 (562)
T ss_pred HHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999876332 2333 66666777777765443 21 12223344556677
Q ss_pred HHHHHHHHHHh
Q 036736 153 LIVGVLALIFG 163 (167)
Q Consensus 153 lv~~~l~~~~g 163 (167)
+.++.-.+.+|
T Consensus 317 l~v~l~~~~~~ 327 (562)
T PRK05326 317 LAVFLSLLPFR 327 (562)
T ss_pred HHHHHHHccCC
Confidence 76665554443
No 16
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=94.34 E-value=0.022 Score=55.29 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=51.2
Q ss_pred ccCcchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccc
Q 036736 25 KHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCS 89 (167)
Q Consensus 25 ~~~~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~ 89 (167)
+.+++.-..|-|+.+.+.+.++.|+.| |+.|+-..|+.+|+...-+.+||.++.+..+.-+|
T Consensus 485 ~f~~l~AfhDpeL~qHl~~~~f~~eLy---AiPwflT~Fshvlpl~kil~LwD~lml~~~SFplm 546 (725)
T KOG1093|consen 485 MFSQLLAFHDPELLQHLIDIGFIPELY---AIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLM 546 (725)
T ss_pred HHHHHHHhcCHHHHHHHHHcCCcHHHH---HHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHH
Confidence 345555556666667777788889999 99999999999999999999999999997766554
No 17
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=87.87 E-value=0.57 Score=45.06 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=46.8
Q ss_pred chhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCC
Q 036736 29 LFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDG 85 (167)
Q Consensus 29 ~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~ 85 (167)
++++.+.|+--.++...|+|..| ++.|+..+|+.-..+..+.-+||-|+...+-
T Consensus 162 LlqYHdPelc~~LdtkkitPd~Y---~lnWf~sLFas~~Stev~~a~WdlY~qqaDP 215 (669)
T KOG3636|consen 162 LLQYHDPELCNHLDTKKITPDMY---TLNWFASLFASSMSTEVCHALWDLYIQQADP 215 (669)
T ss_pred HHHhcCHHHhhhhhccccCchHH---HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc
Confidence 45666777767777888889999 9999999999999999999999999987663
No 18
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.58 E-value=1.2 Score=41.67 Aligned_cols=46 Identities=22% Similarity=0.469 Sum_probs=36.5
Q ss_pred HHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCC
Q 036736 36 EINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPD 84 (167)
Q Consensus 36 e~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~ 84 (167)
+++..++....+-..+ ++.|+.+++.--.+...+|+|||.+|.+..
T Consensus 303 kl~~~l~~~~~~~~l~---t~~wfLt~f~d~lP~~t~LrIwD~~f~eGs 348 (436)
T KOG2058|consen 303 KLSLHLEGNGVDASLE---TLPWFLTLFVDILPSETVLRIWDCLFYEGS 348 (436)
T ss_pred HHHHhhhhcCCCeeee---ehhhhHHHhcccccHHHHHHHHHHHHhccc
Confidence 3333344444447777 999999999999999999999999999854
No 19
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=82.42 E-value=0.91 Score=43.71 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=31.0
Q ss_pred chHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccccccC
Q 036736 54 SSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLG 93 (167)
Q Consensus 54 ~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~~~lG 93 (167)
|+-||+.+-|-|||+.+.+||+|...|++ ++++++.
T Consensus 645 fchrwlllcfkref~ea~airiweacwa~----y~tdyfh 680 (781)
T KOG2224|consen 645 FCHRWLLLCFKREFPEAEAIRIWEACWAH----YLTDYFH 680 (781)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHH----hhHHHHH
Confidence 48999999999999999999999999987 4555553
No 20
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=76.57 E-value=1.3 Score=41.54 Aligned_cols=34 Identities=24% Similarity=0.543 Sum_probs=30.8
Q ss_pred cchHHHHHHHhccchhhhhHHHHHHhhhcCCCCC
Q 036736 53 HSSILWITLLLTHEFNIADNLHIWDTLLSDPDGP 86 (167)
Q Consensus 53 ~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a 86 (167)
-|.|||+...+-|||...|++++|.-++++....
T Consensus 356 ~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~ 389 (488)
T KOG2197|consen 356 FFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSP 389 (488)
T ss_pred ceeeehhhcccccccccccHHHHHHHHHhcCccc
Confidence 3499999999999999999999999999987655
No 21
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=73.96 E-value=1.4 Score=42.27 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=39.7
Q ss_pred HhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCCCcc
Q 036736 39 LALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQC 88 (167)
Q Consensus 39 ~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l 88 (167)
.++.+.+++|..| -..|+-.+++...++..+-||||.|.-|.+...+
T Consensus 463 ~Hl~kl~l~PDiy---lidwiftlyskslpldlacRIwDvy~rdgeeFlf 509 (586)
T KOG2223|consen 463 THLKKLELTPDIY---LIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLF 509 (586)
T ss_pred HHHHhccCCCchh---hHHHHHHHHhccCChHHhhhhhheeeecchHHHH
Confidence 3444556779999 9999999999999999999999999988765443
No 22
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=73.61 E-value=11 Score=38.05 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=42.0
Q ss_pred cccccCCchhhHHHHHHHHhcccchhhhhhhh----hhhHhHHHHHhh--hhhhc--------------HHHHHHHHHHH
Q 036736 88 CSDKLGLSLDLGSFIVGVMISTTDFAKHTLDQ----EACRSLCKFQFS--FRVLS--------------EDDIVAGIFTG 147 (167)
Q Consensus 88 l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le~----eP~r~lfl~lFF--~~~~~--------------~~~~~~~v~~~ 147 (167)
+++.+|.|-=+.+|+||++++..+...+..+. +-+-.++...+| +++.. |.-++.+++++
T Consensus 258 la~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~Li 337 (810)
T TIGR00844 258 FGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVI 337 (810)
T ss_pred HHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHH
Confidence 45578889999999999999976531211111 222233333322 23222 23345666777
Q ss_pred HHHHHHHHHHHH
Q 036736 148 SLARNLIVGVLA 159 (167)
Q Consensus 148 ~~~k~lv~~~l~ 159 (167)
++.|..+++.+.
T Consensus 338 fVrRPpaVlll~ 349 (810)
T TIGR00844 338 FLRRIPAVLILK 349 (810)
T ss_pred HHHHHHHHHHHh
Confidence 788988877653
No 23
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=45.06 E-value=19 Score=33.68 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=22.9
Q ss_pred CccccccCCchhhHHHHHHHHhcccch
Q 036736 86 PQCSDKLGLSLDLGSFIVGVMISTTDF 112 (167)
Q Consensus 86 a~l~~~lGLS~aLGAFiAGvmLs~s~~ 112 (167)
..+++.+|.|.-+++|++|++++....
T Consensus 222 y~lAe~lg~SgilAvv~aGl~l~~~~~ 248 (525)
T TIGR00831 222 FLLAERFHFSGVIAVVAAGLILTNYGR 248 (525)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHccccc
Confidence 357788999999999999999987543
No 24
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=41.91 E-value=22 Score=36.44 Aligned_cols=56 Identities=16% Similarity=0.328 Sum_probs=45.5
Q ss_pred chhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCCCc
Q 036736 29 LFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQ 87 (167)
Q Consensus 29 ~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~ 87 (167)
+.++-|-++|-.+++.+|.|..| |..|+-..|+.-|+..-+=|+.|.+|-......
T Consensus 720 l~hd~hrdlyn~le~~ei~psly---Aapw~lt~fasQf~lGfvarvfd~~flq~tevi 775 (948)
T KOG4436|consen 720 LLHDYHRDLYNHLEENEISPSLY---AAPWFLTVFASQFPLGFVARVFDLIFLQGTEVI 775 (948)
T ss_pred HHHHHhHHHHHHHHhcccChHHh---hhHHHHHHHHhhCcchHHHHHHHHHHhhccchh
Confidence 34444555567777888899999 999999999999999999999999998744433
No 25
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=39.05 E-value=1e+02 Score=29.34 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=42.1
Q ss_pred hHHHHHHHHhcccchhhhhhhhhhhHhHHHHHh-----------hhhhhc--HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036736 98 LGSFIVGVMISTTDFAKHTLDQEACRSLCKFQF-----------SFRVLS--EDDIVAGIFTGSLARNLIVGVLALIFGI 164 (167)
Q Consensus 98 LGAFiAGvmLs~s~~s~h~le~eP~r~lfl~lF-----------F~~~~~--~~~~~~~v~~~~~~k~lv~~~l~~~~g~ 164 (167)
-|+.++|+.++.-.+ . -+.+++++++.+| ||+.+- -+-..+-.++..+.=.++.++++..||+
T Consensus 39 ~gvLfvgl~~G~~g~---~-i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~ 114 (562)
T TIGR03802 39 AGSLIVAVLIGQLGI---Q-IDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAVSGLITVYALAKIFGL 114 (562)
T ss_pred HHHHHHHHHHHhcCC---C-CChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 477999999986544 1 2277999999999 565555 1333334444455557777788877775
No 26
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=37.03 E-value=7.2 Score=35.54 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=38.5
Q ss_pred HHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCC
Q 036736 37 INLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDP 83 (167)
Q Consensus 37 ~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~ 83 (167)
.+-.+.++.+++..| +-+|...++...+++..++++||.++.+.
T Consensus 290 ~~~~~~~~~~~~~~~---~s~w~~t~f~~k~p~~~~~ri~d~~~~~g 333 (397)
T KOG1102|consen 290 LLDHLLPQGIELSMY---ASQWFLTLFAAKFPLELVLRIWDALFVEG 333 (397)
T ss_pred hhhhcccccccccee---ccceeeEeeeccccHHHHHHHhHHHHHhc
Confidence 345566777778899 99999999999999999999999999885
No 27
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=36.97 E-value=29 Score=34.25 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=54.5
Q ss_pred HhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCCCCccccccCCchhhHHHHHHHHhcccchhhhhhh
Q 036736 39 LALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPDGPQCSDKLGLSLDLGSFIVGVMISTTDFAKHTLD 118 (167)
Q Consensus 39 ~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~~a~l~~~lGLS~aLGAFiAGvmLs~s~~s~h~le 118 (167)
-.+++.+|.-+.- ...|+..+|..-|.+...+|+||.+|-+.+.+.+--.+ .-+-+-++++ .++.|
T Consensus 320 eal~~~dielsli---tl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~i----------~ilkmkeqdi-~~iae 385 (848)
T KOG2222|consen 320 EALEDHDIELSLI---TLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLII----------GILKMKEQDI-KEIAE 385 (848)
T ss_pred HHHHhccceeeeh---HHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHHH----------HHHHhhHHHH-HHHHH
Confidence 4555666668888 99999999999999999999999999887755443211 1223456666 55666
Q ss_pred h-hhhHhHHHHH
Q 036736 119 Q-EACRSLCKFQ 129 (167)
Q Consensus 119 ~-eP~r~lfl~l 129 (167)
. +.=-++|-.+
T Consensus 386 ttensa~if~al 397 (848)
T KOG2222|consen 386 TTENSADIFNAL 397 (848)
T ss_pred hcccHHHHHHHH
Confidence 6 6666666554
No 28
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=32.45 E-value=1.5e+02 Score=28.26 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=34.5
Q ss_pred CchhhHHHHHHHHhcccchhhhhhhh------hhhHhHHHHHh-----------hhhhhc---HHHHHHHHHHHHH
Q 036736 94 LSLDLGSFIVGVMISTTDFAKHTLDQ------EACRSLCKFQF-----------SFRVLS---EDDIVAGIFTGSL 149 (167)
Q Consensus 94 LS~aLGAFiAGvmLs~s~~s~h~le~------eP~r~lfl~lF-----------F~~~~~---~~~~~~~v~~~~~ 149 (167)
++.+.|+.++|+.++.-......... .-+|++-+.+| |++.+. +.+++.++.+..+
T Consensus 415 lg~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~ 490 (562)
T TIGR03802 415 LGTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTIL 490 (562)
T ss_pred ehhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46667889999999764322222111 34999999999 555555 4455555554433
No 29
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=31.54 E-value=2.3e+02 Score=22.70 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=40.2
Q ss_pred cCCchhhHHHHHHHHhcccchhh---hhhh--h-hhhHhHHHHHh-----------hhhhhc----HHHHHHHHHHHHHH
Q 036736 92 LGLSLDLGSFIVGVMISTTDFAK---HTLD--Q-EACRSLCKFQF-----------SFRVLS----EDDIVAGIFTGSLA 150 (167)
Q Consensus 92 lGLS~aLGAFiAGvmLs~s~~s~---h~le--~-eP~r~lfl~lF-----------F~~~~~----~~~~~~~v~~~~~~ 150 (167)
+.|..+-|+.++|+.++.-.-++ .... . ..+|++-+.+| |++.+. +.++.++.++..+.
T Consensus 19 ~~LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~ 98 (154)
T TIGR01625 19 IKLGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVP 98 (154)
T ss_pred eEecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34555568899999997633100 1221 1 67999999999 666664 23455555444444
Q ss_pred HHHHHHHHHHHH
Q 036736 151 RNLIVGVLALIF 162 (167)
Q Consensus 151 k~lv~~~l~~~~ 162 (167)
=.++.....+.+
T Consensus 99 ~~~~~~~~~~~~ 110 (154)
T TIGR01625 99 TLLVAVALIKLL 110 (154)
T ss_pred HHHHHHHHHHHh
Confidence 444444433333
No 30
>PRK04972 putative transporter; Provisional
Probab=29.08 E-value=2e+02 Score=27.53 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=43.4
Q ss_pred CCchhhHHHHHHHHhcccchhhhhhhhhhhHhHHHHHh-----------hhhhhc---HHHHHHHHHHHHHHHHHHHHHH
Q 036736 93 GLSLDLGSFIVGVMISTTDFAKHTLDQEACRSLCKFQF-----------SFRVLS---EDDIVAGIFTGSLARNLIVGVL 158 (167)
Q Consensus 93 GLS~aLGAFiAGvmLs~s~~s~h~le~eP~r~lfl~lF-----------F~~~~~---~~~~~~~v~~~~~~k~lv~~~l 158 (167)
.|-.+-|+.++|+.++.-.+ . -..+.+++.+.+| |++.+- +.+.+.++++..+ =.++.+.+
T Consensus 36 ~LG~~~g~L~vgl~~g~~~~---~-~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~ 110 (558)
T PRK04972 36 QLGNSIGVLVVSLLLGQQHF---S-INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS-ALVIALGL 110 (558)
T ss_pred ecCcchHHHHHHHHHHhCCC---C-CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHH
Confidence 36667788999999986443 1 2477899999999 666555 4444455444333 34555556
Q ss_pred HHHHhh
Q 036736 159 ALIFGI 164 (167)
Q Consensus 159 ~~~~g~ 164 (167)
++.||+
T Consensus 111 ~~~~~~ 116 (558)
T PRK04972 111 GKLFGW 116 (558)
T ss_pred HHHhCC
Confidence 666654
No 31
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=28.44 E-value=2.1e+02 Score=27.38 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.0
Q ss_pred ccccccCCchhhHHHHHHHHhcc
Q 036736 87 QCSDKLGLSLDLGSFIVGVMIST 109 (167)
Q Consensus 87 ~l~~~lGLS~aLGAFiAGvmLs~ 109 (167)
.+++.+|+|--+-.++||++++.
T Consensus 252 ~lAE~l~~SGiLAvv~aGl~~~~ 274 (559)
T TIGR00840 252 LFAETLHLSGILALIFCGITMKK 274 (559)
T ss_pred HHHHHhccchHHHHHHHHHHHHh
Confidence 46778899999999999999964
No 32
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=27.31 E-value=2.8e+02 Score=22.55 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=42.3
Q ss_pred cccCCchhhHHHHHHHHhcccchhhh---hhhh-hhhHhHHHHHh-----------hhhhhc---HHHHHHHHHHHHHHH
Q 036736 90 DKLGLSLDLGSFIVGVMISTTDFAKH---TLDQ-EACRSLCKFQF-----------SFRVLS---EDDIVAGIFTGSLAR 151 (167)
Q Consensus 90 ~~lGLS~aLGAFiAGvmLs~s~~s~h---~le~-eP~r~lfl~lF-----------F~~~~~---~~~~~~~v~~~~~~k 151 (167)
..++|..+-|..++|+.++.-.-+.+ .... +-+|++.+.+| |++.+. +.++..++++. ++=
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~-~~~ 97 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIIT-LVP 97 (169)
T ss_pred cceeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHH
Confidence 34567888899999999976532111 1111 77999999999 555555 34444444443 333
Q ss_pred HHHHHHHHH
Q 036736 152 NLIVGVLAL 160 (167)
Q Consensus 152 ~lv~~~l~~ 160 (167)
.++.+.+.+
T Consensus 98 ~~~~~~~~~ 106 (169)
T PF06826_consen 98 LLIALVIGR 106 (169)
T ss_pred HHHHHHHHH
Confidence 444455554
No 33
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=26.08 E-value=78 Score=29.71 Aligned_cols=47 Identities=11% Similarity=0.245 Sum_probs=33.8
Q ss_pred ccccccCCchhhHHHHHHHHhcc--c----------chhhhhhhh--hhhH-hHHHHHh-hhhh
Q 036736 87 QCSDKLGLSLDLGSFIVGVMIST--T----------DFAKHTLDQ--EACR-SLCKFQF-SFRV 134 (167)
Q Consensus 87 ~l~~~lGLS~aLGAFiAGvmLs~--s----------~~s~h~le~--eP~r-~lfl~lF-F~~~ 134 (167)
+++...|+.+.+|+|++|+++-. + +. -+.+|+ +|+- .+++=+| |.++
T Consensus 220 ~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p-~~rle~~L~p~V~~~ILPLFAFANa 282 (423)
T PRK14853 220 ILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGL-AEHLEHRLRPLSAGVAVPVFAFFSA 282 (423)
T ss_pred HHHHHhCCCHHHHHHHHHHhcccccccccccccccCCH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58889999999999999999942 1 11 134555 7776 5777888 6643
No 34
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=25.11 E-value=1.2e+02 Score=30.31 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=50.9
Q ss_pred ccccccC-CchhhHHHHHHHHhcc-cchhhhhhhh-hhh-HhHHHHHhhhhhhc---------HHHHHHHHHHHHHHHHH
Q 036736 87 QCSDKLG-LSLDLGSFIVGVMIST-TDFAKHTLDQ-EAC-RSLCKFQFSFRVLS---------EDDIVAGIFTGSLARNL 153 (167)
Q Consensus 87 ~l~~~lG-LS~aLGAFiAGvmLs~-s~~s~h~le~-eP~-r~lfl~lFF~~~~~---------~~~~~~~v~~~~~~k~l 153 (167)
.+.+..+ ..+.+|||+.|+++-. -++..-..|. |-+ -++|+-+||...-. |.-...-+.+..+.|.+
T Consensus 272 ~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~~~~~~~~i~~~~~~K~l 351 (769)
T KOG1650|consen 272 FLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINKWGALIRTILIFGAVKLL 351 (769)
T ss_pred HHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556 6779999999999964 3443333333 333 36677777655543 44455667777888999
Q ss_pred HHHHHHHHHhh
Q 036736 154 IVGVLALIFGI 164 (167)
Q Consensus 154 v~~~l~~~~g~ 164 (167)
...+.++.+++
T Consensus 352 ~t~~~sl~~k~ 362 (769)
T KOG1650|consen 352 STLGTSLYCKL 362 (769)
T ss_pred HHHHHHHHhcC
Confidence 88888886653
No 35
>PRK03818 putative transporter; Validated
Probab=24.11 E-value=2.8e+02 Score=26.43 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=36.8
Q ss_pred hHHHHHHHHhcc----cchhhhhhhh---hhhHhHHHHHh-----------hhhhhc---HHHHHHHHHHHHHHHHHHHH
Q 036736 98 LGSFIVGVMIST----TDFAKHTLDQ---EACRSLCKFQF-----------SFRVLS---EDDIVAGIFTGSLARNLIVG 156 (167)
Q Consensus 98 LGAFiAGvmLs~----s~~s~h~le~---eP~r~lfl~lF-----------F~~~~~---~~~~~~~v~~~~~~k~lv~~ 156 (167)
-|+.++|++++. -.+ .... .-+|++.+.+| |++.+- +...+.++++..+. .++.+
T Consensus 34 ~g~L~~gl~~G~~~~~~~~---~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~-~~~~~ 109 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGL---TLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILG-GLVTA 109 (552)
T ss_pred HHHHHHHHHHhccccccCc---ccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHH
Confidence 477999999986 222 1222 34999999999 555554 44455555544443 33344
Q ss_pred HHHHHHhh
Q 036736 157 VLALIFGI 164 (167)
Q Consensus 157 ~l~~~~g~ 164 (167)
++...||+
T Consensus 110 ~~~~~~~~ 117 (552)
T PRK03818 110 ILHKLFGI 117 (552)
T ss_pred HHHHHhCC
Confidence 44555543
No 36
>PRK04972 putative transporter; Provisional
Probab=21.06 E-value=3.2e+02 Score=26.16 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=44.0
Q ss_pred ccCCchhhHHHHHHHHhcccchhhhhhhh------hhhHhHHHHHh-----------hhhhhc---HHHHHHHHHHHHHH
Q 036736 91 KLGLSLDLGSFIVGVMISTTDFAKHTLDQ------EACRSLCKFQF-----------SFRVLS---EDDIVAGIFTGSLA 150 (167)
Q Consensus 91 ~lGLS~aLGAFiAGvmLs~s~~s~h~le~------eP~r~lfl~lF-----------F~~~~~---~~~~~~~v~~~~~~ 150 (167)
.++|..+=|+.++|++++.-.-....... .-+|++=+.+| |++.+. +.++++|+.+..+.
T Consensus 407 ~~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~ 486 (558)
T PRK04972 407 SFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVP 486 (558)
T ss_pred eeeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44577788889999999873332223332 45999999999 666655 66667776655544
Q ss_pred HHHHHHHHH
Q 036736 151 RNLIVGVLA 159 (167)
Q Consensus 151 k~lv~~~l~ 159 (167)
.++.+..+
T Consensus 487 -~~~~~~~~ 494 (558)
T PRK04972 487 -VVICFLFG 494 (558)
T ss_pred -HHHHHHHH
Confidence 44444444
Done!