Query 036736
Match_columns 167
No_of_seqs 186 out of 360
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 98.2 3.2E-07 1.1E-11 77.3 2.3 54 28-84 222-275 (345)
2 1fkm_A Protein (GYP1P), ORF YO 98.2 4E-07 1.4E-11 79.3 1.8 53 28-83 209-261 (396)
3 3hzj_A Rabgap1L, RAB GTPase-ac 98.0 1.8E-06 6.1E-11 71.8 2.5 49 33-84 172-220 (310)
4 3qwl_A TBC1 domain family memb 98.0 1.8E-06 6E-11 73.4 2.3 51 29-82 181-231 (294)
5 3qye_A TBC1 domain family memb 98.0 1.9E-06 6.4E-11 72.1 2.1 53 29-84 202-254 (331)
6 2qq8_A TBC1 domain family memb 98.0 2.1E-06 7.3E-11 72.6 2.2 51 30-83 208-258 (334)
7 4hl4_A TBC1 domain family memb 97.8 9.2E-06 3.1E-10 67.2 3.8 56 25-84 178-234 (292)
8 1zcd_A Na(+)/H(+) antiporter 1 81.9 1.1 3.9E-05 39.6 4.0 50 87-136 217-274 (388)
9 2knc_A Integrin alpha-IIB; tra 38.9 50 0.0017 21.8 4.4 30 135-165 10-39 (54)
10 2l8s_A Integrin alpha-1; trans 38.1 47 0.0016 22.0 4.2 30 135-165 7-36 (54)
11 2k1a_A Integrin alpha-IIB; sin 34.5 52 0.0018 20.6 3.8 30 135-165 8-37 (42)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=98.24 E-value=3.2e-07 Score=77.29 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=43.6
Q ss_pred cchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCC
Q 036736 28 SLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPD 84 (167)
Q Consensus 28 ~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~ 84 (167)
.++...+-+++..+++.++.|++| ++||+.++|++||++++++|+||.++++..
T Consensus 222 ~ll~~~dP~L~~hL~~~~i~~~~f---~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~ 275 (345)
T 2qfz_A 222 ELVSRIDEQVHRHLDQHEVRYLQF---AFRWMNNLLMREVPLRCTIRLWDTYQSEPD 275 (345)
T ss_dssp HHHHHHCHHHHHHHHHTTCCHHHH---HHHHHHTTTTTTSCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHcCCchhhH---HHHHHHHHHcccCCHHHHHHHHHHHHhCCC
Confidence 344444555555555666669999 999999999999999999999999999854
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=98.19 E-value=4e-07 Score=79.26 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=43.3
Q ss_pred cchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCC
Q 036736 28 SLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDP 83 (167)
Q Consensus 28 ~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~ 83 (167)
+++...+-+++..+++.++.|++| ++||+.++|+|||++++++|+||.++++.
T Consensus 209 ~LL~~~dP~L~~hL~~~~i~~~~f---~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 209 QLVKRIDADLYNHFQNEHVEFIQF---AFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHCHHHHHHHHHTTCCTHHH---HHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHH---HHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 344444555555556666679999 99999999999999999999999999976
No 3
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=98.02 E-value=1.8e-06 Score=71.78 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=39.1
Q ss_pred hhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCC
Q 036736 33 QTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPD 84 (167)
Q Consensus 33 ~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~ 84 (167)
.+-+++..+++.++.|+.| ++||+.++|++|+++++++|+||.++++..
T Consensus 172 ~~p~L~~hL~~~~i~~~~~---~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 172 QLPDLHSHFSDLNLEAHMY---ASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HCHHHHHHHHHHTCCGGGT---SHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred hChHHHHHHHHcCCChHHH---HHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 3333444444455559999 999999999999999999999999999843
No 4
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=98.01 E-value=1.8e-06 Score=73.38 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=39.0
Q ss_pred chhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcC
Q 036736 29 LFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSD 82 (167)
Q Consensus 29 ~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~ 82 (167)
++...+-+++..+++.++.|++| ..||+.++|++||++++++|+||.++++
T Consensus 181 LL~~~dP~L~~HL~~~~i~~~~~---~~rWfl~lF~~~~p~~~vlRlWD~~~~~ 231 (294)
T 3qwl_A 181 YLNLEDGRLLTHLRMCSAAPKLP---YDLWFKRCFAGCLPESSLQRVWDKVVSG 231 (294)
T ss_dssp HHHHHCHHHHHHHHHTTCGGGSC---HHHHHTSTTTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCchhH---HHHHHHHHhccCCCHHHHHHHHHHHHhC
Confidence 33334444444444555559988 6699999999999999999999999994
No 5
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=97.99 E-value=1.9e-06 Score=72.10 Aligned_cols=53 Identities=17% Similarity=0.362 Sum_probs=42.4
Q ss_pred chhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCCC
Q 036736 29 LFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDPD 84 (167)
Q Consensus 29 ~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~~ 84 (167)
++...+-+++..+++.++.|++| ++||+.++|++|+++++++|+||.++++..
T Consensus 202 ll~~~~p~L~~hL~~~~i~~~~~---~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~ 254 (331)
T 3qye_A 202 LLHDYHRDLYNHLEEHEIGPSLY---AAPWFLTMFASQFPLGFVARVFDMIFLQGT 254 (331)
T ss_dssp HHHHHCHHHHHHHHHTTCCGGGT---SHHHHHSTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCChHHH---HHHHHHHHhhhhCCHHHHHHHHHHHHHCCc
Confidence 34444444555555666669999 999999999999999999999999999844
No 6
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=97.98 E-value=2.1e-06 Score=72.58 Aligned_cols=51 Identities=22% Similarity=0.424 Sum_probs=40.6
Q ss_pred hhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchhhhhHHHHHHhhhcCC
Q 036736 30 FHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFNIADNLHIWDTLLSDP 83 (167)
Q Consensus 30 ~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~lad~LrIWD~lls~~ 83 (167)
+...+.+++..+++.++.|..| ++||+.++|++|+++++++|+||.++++.
T Consensus 208 l~~~~P~L~~hL~~~~i~~~~~---~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 208 FEENLPKLFAHFKKNNLTPDIY---LIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHCHHHHHHHHHTTCCGGGT---HHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHCHHHHHHHHHcCCCccch---HHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 3333444444455556669999 99999999999999999999999999974
No 7
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=97.85 E-value=9.2e-06 Score=67.22 Aligned_cols=56 Identities=9% Similarity=0.212 Sum_probs=44.8
Q ss_pred ccCcchhhhhHHHHHhcccCCCCCcccccchHHHHHHHhccchh-hhhHHHHHHhhhcCCC
Q 036736 25 KHSSLFHDQTLEINLALNRSSKTPSFRHHSSILWITLLLTHEFN-IADNLHIWDTLLSDPD 84 (167)
Q Consensus 25 ~~~~~~~~~~le~~~~l~~~~i~p~~y~~~aFRWI~LL~srEF~-lad~LrIWD~lls~~~ 84 (167)
....++...+-+++..+++.++ +.+| ++||+.++|++|++ +++++|+||.++++..
T Consensus 178 ~l~~ll~~~~P~L~~hL~~~~i-~~~~---~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~ 234 (292)
T 4hl4_A 178 YLMPIIDQVNPELHDFMQSAEV-GTIF---ALSWLITWFGHVLSDFRHVVRLYDFFLACHP 234 (292)
T ss_dssp GHHHHHHHHCHHHHHHHC-CCC-CSGG---GHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHCHHHHHHHHHcCC-Ccch---HHHHHHHHHhhhcCcHHHHHHHHHHHHHcCC
Confidence 3345566666677777778888 4577 99999999999996 9999999999999853
No 8
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=81.94 E-value=1.1 Score=39.56 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=39.0
Q ss_pred ccccccCCchhhHHHHHHHHhcccc----hhhhhhhh--hhhHh-HHHHHh-hhhhhc
Q 036736 87 QCSDKLGLSLDLGSFIVGVMISTTD----FAKHTLDQ--EACRS-LCKFQF-SFRVLS 136 (167)
Q Consensus 87 ~l~~~lGLS~aLGAFiAGvmLs~s~----~s~h~le~--eP~r~-lfl~lF-F~~~~~ 136 (167)
++++..|+.+.+|||++|+++...+ -..+.+|+ +|+-. +++=+| |.++-.
T Consensus 217 ~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv 274 (388)
T 1zcd_A 217 TAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGV 274 (388)
T ss_dssp HHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCC
T ss_pred HHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCe
Confidence 5678999999999999999999853 12445666 88886 778899 877643
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.93 E-value=50 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=23.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036736 135 LSEDDIVAGIFTGSLARNLIVGVLALIFGIF 165 (167)
Q Consensus 135 ~~~~~~~~~v~~~~~~k~lv~~~l~~~~g~~ 165 (167)
+++|.++.+++.++++-++++++|-. .|+|
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK-~GFF 39 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWK-VGFF 39 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-cCcc
Confidence 34778899999999999999988863 4554
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=38.14 E-value=47 Score=22.04 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=23.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036736 135 LSEDDIVAGIFTGSLARNLIVGVLALIFGIF 165 (167)
Q Consensus 135 ~~~~~~~~~v~~~~~~k~lv~~~l~~~~g~~ 165 (167)
+++|.++.+++.++++-++++++|-. .|+|
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK-~GFF 36 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWK-IGFF 36 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH-cCcc
Confidence 34788899999999999999998863 4554
No 11
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=34.46 E-value=52 Score=20.61 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=23.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036736 135 LSEDDIVAGIFTGSLARNLIVGVLALIFGIF 165 (167)
Q Consensus 135 ~~~~~~~~~v~~~~~~k~lv~~~l~~~~g~~ 165 (167)
+++|.++.++..++++-.+++++|-. .|+|
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK-~GFF 37 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWK-VGFF 37 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH-TTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-cCcc
Confidence 34778899999999999999888863 3544
Done!