BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036738
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 107/166 (64%), Gaps = 5/166 (3%)
Query: 14 YDVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAII 73
YDVFLSFRG DTR NFIS LY L + I FKDD+ELE G+ SP L IE SR A++
Sbjct: 9 YDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVV 68
Query: 74 VFSKNYASSTWCLDELVHILDCKNKNAQRMVYPIFYDVEPTVVRNQTGNFQEAFAKHVEV 133
V S+NYA+S+WCLDELV I+D + K + V PIFY VEP VR QTG E F KH
Sbjct: 69 VVSENYAASSWCLDELVTIMDFEKKGSI-TVMPIFYGVEPNHVRWQTGVLAEQFKKHAS- 126
Query: 134 FKKSIEKVQKWREALKEVANISGWELKEYRNESKFIWDIINAISSQ 179
++ EKV KWR+AL A +SG + ++SK + I N IS++
Sbjct: 127 -REDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 99/146 (67%), Gaps = 2/146 (1%)
Query: 14 YDVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAII 73
Y+VFLSFRG DTR+ F LY +L I+ F+DD+EL KG+ I P LL+AI+ S+I +
Sbjct: 36 YEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVP 95
Query: 74 VFSKNYASSTWCLDELVHILDCKNKNAQRMVYPIFYDVEPTVVRNQTGNFQEAFAKHVEV 133
+ S YA S WCL EL I+ + ++ +R++ PIFY V+P+ VR+QTG +++AF KH
Sbjct: 96 IISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK 155
Query: 134 FKKSIEKVQKWREALKEVANISGWEL 159
F + +Q W++ALK+V ++ GW +
Sbjct: 156 FDG--QTIQNWKDALKKVGDLKGWHI 179
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 14 YDVFLSFRGADTRKNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIAII 73
+D+F+S D + +F+ L L G V+ DD L G+S+ + K + +SR I+
Sbjct: 21 HDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIV 79
Query: 74 VFSKNYASSTWCLDELVHILDCKNKNAQRMVYPIFYDVEPTVVRNQTGNFQEAFAKHVEV 133
V S ++ W EL + ++ R++ PI++ V +++ +F A +
Sbjct: 80 VLSTHFFKKEWPQKELDGLFQLESSGRSRIL-PIWHKVS----KDEVASFSPTMADKL-A 133
Query: 134 FKKSIEKVQK 143
F S + V +
Sbjct: 134 FNTSTKSVDE 143
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 164 NESKFIWDIINAISSQIRVKPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGL 223
+E KF+ ++ + +K K+ K I +L + + ++D G + + +IGI G G+
Sbjct: 248 DEIKFMLKEVSDLDLSKDLKTKM--KWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGI 305
Query: 224 GKTTLARVIYDLISHEFEGS 243
GKTT AR++ I+ + EGS
Sbjct: 306 GKTTFARILVGEITAD-EGS 324
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 14 YDVFLSFRGADTR--KNFISHLYAALNGKGIYVFKDDEELEKGESISPRLLKAIEASRIA 71
+ F+S+ G D+ KN L L +G + + G+SI ++ IE S +
Sbjct: 13 FHAFISYSGHDSFWVKN---ELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKS 69
Query: 72 IIVFSKNYASSTWCLDEL 89
I V S N+ S WC EL
Sbjct: 70 IFVLSPNFVQSEWCHYEL 87
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 23/132 (17%)
Query: 215 IGICGMGGLGKTTLARVI---YDLISHEFEGSSFLANVREKSEREGGVISFQR------- 264
+ I GM G GK+ LA + L+ F G +V K ++ G ++ Q
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG-KQDKSGLLMKLQNLCTRLDQ 208
Query: 265 -QLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSG 323
+ SQ L L I D + IL R +H + LL++DDV DS L+ + S
Sbjct: 209 DESFSQRLPLN---IEEAKDRLRILMLR-KHPRSLLILDDVWDSWVLKA-------FDSQ 257
Query: 324 SRIIITSRDEGL 335
+I++T+RD+ +
Sbjct: 258 CQILLTTRDKSV 269
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 28/144 (19%)
Query: 215 IGICGMGGLGKTTLARVI---YDLISHEFEGSSFLANVREKSEREGGVISFQR------- 264
+ I GM G GK+ LA + L+ F G +V K ++ G ++ Q
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG-KQDKSGLLMKLQNLCTRLDQ 214
Query: 265 -QLVSQLLKLTDNRIWNEDDGINILGSRLQHKKVLLVIDDVIDSKQLEYLAGKHGWYGSG 323
+ SQ L L I D + IL R +H + LL++DDV DS L+ + S
Sbjct: 215 DESFSQRLPLN---IEEAKDRLRILMLR-KHPRSLLILDDVWDSWVLKA-------FDSQ 263
Query: 324 SRIIITSRDEGLLKTNRVDEVYKP 347
+I++T+RD+ + D V P
Sbjct: 264 CQILLTTRDKSV-----TDSVMGP 282
>pdb|2P4S|A Chain A, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
pdb|2P4S|B Chain B, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
pdb|2P4S|C Chain C, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
Length = 373
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 164 NESKF---IWDIINAISSQIRVKPKILKKLVGIDSRLEELRFLMDKGPS----ADVRMIG 216
N+ +F + + N ++ + K++ + +GI++ L E + GP+ A+V+M+
Sbjct: 236 NDERFGPRFFGMANTYDPKLNQQAKVIARQIGIENELREGVYTCLGGPNFETVAEVKMLS 295
Query: 217 ICGMGGLGKTTLARVI 232
+ G+ +G +T+ +I
Sbjct: 296 MLGVDAIGMSTVHEII 311
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 181 RVKPKILKKLVGIDSRLEELRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLISHEF 240
+ +P++L +VG ++ L+ + G ++ + I GM G+GKTT ++HE
Sbjct: 14 KYRPQVLSDIVGNKETIDRLQQIAKDG---NMPHMIISGMPGIGKTTSVHC----LAHEL 66
Query: 241 EGSSFLANVRE 251
G S+ V E
Sbjct: 67 LGRSYADGVLE 77
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 208 PSADVRMIGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREG---------- 257
P A IG+ G G+GKT L + + + ++ E G S A V E++ REG
Sbjct: 140 PYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERT-REGNDLYHEMKDS 198
Query: 258 GVISFQRQLVSQLLKLTDNRIWNEDDGINILG--SRLQHKKVLLVIDDV 304
GVIS + Q+ + R+ G+ + + + VLL ID++
Sbjct: 199 GVISKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDREGQDVLLFIDNI 247
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 51 LEKGESISPRLLKAIEASRIAIIVFSKNYASSTWCLDEL 89
+ G+SIS ++ IE S +I V S N+ + WC E
Sbjct: 74 FDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 215 IGICGMGGLGKTTLARVIYDLISHEFEGSSFLANVREKSEREG 257
IG+ G G+GKT L + + I+ E G S A V E++ REG
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERT-REG 195
>pdb|3J21|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 150
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 259 VISFQRQLVSQLLKLTDNRIWNEDDGINILGSRLQHKKV-LLVIDDVIDSK----QLEYL 313
+ QR++ +++LK +NRIW + + I+ + S + + + L+ + VI K Q Y
Sbjct: 3 TLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYR 62
Query: 314 A---------GKHGWYGSGSR 325
A G+H G GSR
Sbjct: 63 AKIRHEQKKKGRH--RGPGSR 81
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 182 VKPKILKKLVGIDSRLEELRFLMD--KGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239
++PK L + +G + ++LR ++ K + + + G GLGKTTLA V I+HE
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHV----IAHE 61
Query: 240 F 240
Sbjct: 62 L 62
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1GXB|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1ZXY|A Chain A, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|B Chain B, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|C Chain C, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|D Chain D, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZYK|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|2GVQ|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
Length = 345
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 146 EALKEVANISGWELKEYRNESKFIWD------IINAISSQIRVKPKILKKLVGIDSRLEE 199
E LK++ N S E+ E +K I +++AI +R+K + ++VG + E
Sbjct: 5 EILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRE 64
Query: 200 LRFLMDKGPSADVRMIGICGMGGLGKTTLARVIYDLIS 237
L +D + D G G+G + +T + ++ L++
Sbjct: 65 LAIKIDVPNAIDTAGTGGDGLGTVNVSTASAILLSLVN 102
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 182 VKPKILKKLVGIDSRLEELRFLMD--KGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239
++PK L + +G + ++LR ++ K + + + G GLGKTTLA V I+HE
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHV----IAHE 61
Query: 240 F 240
Sbjct: 62 L 62
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 182 VKPKILKKLVGIDSRLEELRFLMD--KGPSADVRMIGICGMGGLGKTTLARVIYDLISHE 239
++PK L + +G + ++LR ++ K + + + G GLGKTTLA V I+HE
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHV----IAHE 61
Query: 240 F 240
Sbjct: 62 L 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,797,115
Number of Sequences: 62578
Number of extensions: 454879
Number of successful extensions: 1544
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1527
Number of HSP's gapped (non-prelim): 33
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)